Query 007487
Match_columns 602
No_of_seqs 549 out of 3602
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 02:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.5E-49 5.3E-54 420.0 28.3 221 105-337 24-253 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 3.9E-49 1.3E-53 419.4 29.2 217 105-337 3-223 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.8E-49 6.1E-54 419.2 26.1 217 105-337 4-228 (359)
4 3tif_A Uncharacterized ABC tra 100.0 9E-49 3.1E-53 393.1 27.6 218 106-335 2-232 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 1E-48 3.4E-53 401.1 27.8 218 105-337 7-233 (275)
6 1b0u_A Histidine permease; ABC 100.0 9.1E-49 3.1E-53 399.2 27.3 217 105-337 6-242 (262)
7 2olj_A Amino acid ABC transpor 100.0 1.2E-48 4E-53 398.3 27.6 217 105-337 24-248 (263)
8 2pcj_A ABC transporter, lipopr 100.0 3E-48 1E-52 386.6 27.2 211 105-332 4-223 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 5.5E-48 1.9E-52 391.9 29.0 217 105-337 15-235 (256)
10 1g6h_A High-affinity branched- 100.0 1.6E-48 5.4E-53 396.4 24.6 215 105-334 7-239 (257)
11 1z47_A CYSA, putative ABC-tran 100.0 6.7E-48 2.3E-52 407.3 28.3 219 104-337 13-235 (355)
12 1g29_1 MALK, maltose transport 100.0 9.1E-48 3.1E-52 409.5 29.4 217 105-337 3-229 (372)
13 1ji0_A ABC transporter; ATP bi 100.0 5.8E-48 2E-52 388.4 26.1 215 105-336 6-227 (240)
14 2it1_A 362AA long hypothetical 100.0 6.7E-48 2.3E-52 408.6 27.6 217 105-337 3-223 (362)
15 2yyz_A Sugar ABC transporter, 100.0 5.9E-48 2E-52 408.6 26.9 217 105-337 3-223 (359)
16 4g1u_C Hemin import ATP-bindin 100.0 7.6E-48 2.6E-52 393.2 26.3 214 105-336 11-236 (266)
17 1oxx_K GLCV, glucose, ABC tran 100.0 6E-48 2E-52 408.4 25.1 217 105-337 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 9.6E-48 3.3E-52 408.8 24.6 217 105-337 11-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 2.2E-47 7.6E-52 402.8 26.0 212 106-337 2-217 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 4.8E-47 1.6E-51 381.6 22.2 211 106-337 2-216 (240)
21 2yz2_A Putative ABC transporte 100.0 1.1E-46 3.7E-51 384.8 24.9 222 105-338 2-228 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 3.2E-46 1.1E-50 378.0 23.4 214 105-333 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 2E-46 6.8E-51 385.1 21.9 217 105-336 21-251 (279)
24 2nq2_C Hypothetical ABC transp 100.0 1.5E-45 5E-50 373.6 26.2 209 105-336 4-216 (253)
25 3nh6_A ATP-binding cassette SU 100.0 1.6E-45 5.6E-50 382.3 24.4 215 105-337 53-277 (306)
26 2zu0_C Probable ATP-dependent 100.0 3.2E-45 1.1E-49 374.1 24.9 218 105-336 20-253 (267)
27 2ff7_A Alpha-hemolysin translo 100.0 3.5E-45 1.2E-49 369.7 24.5 216 104-336 6-231 (247)
28 2qi9_C Vitamin B12 import ATP- 100.0 3.8E-45 1.3E-49 369.6 22.2 206 105-336 4-221 (249)
29 2ixe_A Antigen peptide transpo 100.0 2.9E-45 1E-49 375.1 20.0 218 105-337 16-245 (271)
30 1mv5_A LMRA, multidrug resista 100.0 3.6E-45 1.2E-49 368.7 17.1 215 106-337 2-226 (243)
31 2pjz_A Hypothetical protein ST 100.0 3.7E-44 1.3E-48 365.1 24.0 209 106-337 2-215 (263)
32 1sgw_A Putative ABC transporte 100.0 4.5E-45 1.6E-49 360.9 16.6 203 103-326 8-210 (214)
33 2ghi_A Transport protein; mult 100.0 6.7E-44 2.3E-48 362.9 23.6 216 105-337 17-242 (260)
34 2pze_A Cystic fibrosis transme 100.0 1.6E-43 5.5E-48 353.6 20.9 206 105-336 6-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 4.5E-44 1.5E-48 382.8 17.0 215 104-337 18-242 (390)
36 2cbz_A Multidrug resistance-as 100.0 4.7E-43 1.6E-47 352.0 19.0 207 105-337 3-217 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 1E-41 3.4E-46 384.4 26.1 217 105-337 341-567 (582)
38 3b60_A Lipid A export ATP-bind 100.0 8.5E-42 2.9E-46 385.0 24.0 217 105-337 341-567 (582)
39 2yl4_A ATP-binding cassette SU 100.0 1.1E-41 3.9E-46 384.9 24.8 219 106-337 342-570 (595)
40 4a82_A Cystic fibrosis transme 100.0 1E-41 3.4E-46 384.0 23.9 217 104-337 338-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.1E-41 3.6E-46 384.3 23.3 217 104-337 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 8.4E-42 2.9E-46 386.0 19.0 215 105-337 354-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 7.1E-41 2.4E-45 345.5 18.0 201 105-336 40-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 3E-40 1E-44 402.0 19.4 219 105-337 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 4.7E-39 1.6E-43 391.5 23.3 217 105-337 415-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 3.2E-38 1.1E-42 383.2 22.9 218 104-337 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 4.1E-38 1.4E-42 382.4 20.1 220 104-337 1029-1258(1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 2.5E-37 8.7E-42 344.7 20.7 206 103-337 285-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 3.7E-37 1.3E-41 347.2 21.7 205 104-337 356-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 8.7E-37 3E-41 339.9 20.8 206 103-335 267-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.3E-35 4.4E-40 334.2 17.5 203 109-338 350-560 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 3.3E-35 1.1E-39 336.5 15.4 208 122-337 30-298 (670)
53 2iw3_A Elongation factor 3A; a 100.0 4.1E-34 1.4E-38 333.4 24.7 200 103-337 433-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-35 5.5E-40 330.1 12.3 194 106-324 21-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 1.8E-35 6.3E-40 333.3 12.6 191 109-324 95-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 4.5E-34 1.5E-38 333.1 15.6 206 104-331 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4.3E-33 1.5E-37 318.9 19.1 196 123-337 335-640 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 2.1E-32 7.3E-37 308.0 11.4 186 124-328 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-32 1E-36 303.4 11.2 172 134-327 23-216 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 3.3E-30 1.1E-34 298.5 17.8 209 104-337 628-942 (972)
61 2vf7_A UVRA2, excinuclease ABC 100.0 3.2E-30 1.1E-34 298.1 17.7 214 104-337 501-827 (842)
62 3pih_A Uvrabc system protein A 100.0 1.7E-29 5.8E-34 294.3 23.1 199 124-337 598-902 (916)
63 2ygr_A Uvrabc system protein A 100.0 4.1E-29 1.4E-33 290.4 20.4 209 104-337 646-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 7.2E-32 2.4E-36 294.8 -9.8 185 127-335 129-336 (460)
65 4aby_A DNA repair protein RECN 100.0 4.2E-28 1.4E-32 261.7 15.8 202 124-330 49-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.9E-25 2.4E-29 233.4 16.4 83 244-328 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 2.4E-28 8.4E-33 240.1 -11.3 141 122-308 12-159 (208)
68 1e69_A Chromosome segregation 99.9 1.2E-24 4E-29 227.7 12.6 88 244-334 216-310 (322)
69 4gp7_A Metallophosphoesterase; 99.9 7.3E-26 2.5E-30 215.3 2.2 146 128-312 1-163 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 9.2E-27 3.2E-31 250.5 -12.6 172 122-319 35-248 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 7.6E-25 2.6E-29 210.1 0.2 147 138-328 2-159 (178)
72 3b9q_A Chloroplast SRP recepto 99.9 4E-24 1.4E-28 221.7 1.6 172 126-326 90-284 (302)
73 1znw_A Guanylate kinase, GMP k 99.9 1.9E-26 6.5E-31 225.8 -16.3 177 123-322 9-202 (207)
74 2v9p_A Replication protein E1; 99.9 1.5E-25 5E-30 232.0 -15.3 167 106-340 102-269 (305)
75 2og2_A Putative signal recogni 99.9 5.9E-23 2E-27 217.2 2.1 171 127-326 148-341 (359)
76 3sop_A Neuronal-specific septi 99.9 1.7E-23 5.9E-28 213.6 -2.8 145 138-307 4-150 (270)
77 2o5v_A DNA replication and rep 99.8 1.8E-20 6.1E-25 198.4 14.4 84 244-335 261-354 (359)
78 2pt7_A CAG-ALFA; ATPase, prote 99.8 3.8E-22 1.3E-26 209.4 1.2 129 125-325 160-291 (330)
79 2dpy_A FLII, flagellum-specifi 99.8 8.7E-24 3E-28 229.7 -11.7 191 105-337 131-344 (438)
80 1z6g_A Guanylate kinase; struc 99.8 5.9E-25 2E-29 217.4 -20.8 170 124-322 11-192 (218)
81 3qkt_A DNA double-strand break 99.8 1.5E-20 5.2E-25 197.9 10.5 77 244-322 245-327 (339)
82 3aez_A Pantothenate kinase; tr 99.8 1E-23 3.6E-28 219.5 -14.1 123 133-280 87-209 (312)
83 3pih_A Uvrabc system protein A 99.8 1.1E-20 3.8E-25 220.3 8.5 162 151-337 383-560 (916)
84 1cr0_A DNA primase/helicase; R 99.8 4.4E-21 1.5E-25 197.6 4.2 183 123-326 22-237 (296)
85 1tf7_A KAIC; homohexamer, hexa 99.8 3.4E-20 1.2E-24 206.3 10.4 156 130-325 275-444 (525)
86 4ad8_A DNA repair protein RECN 99.8 8.5E-20 2.9E-24 202.8 11.0 77 245-324 394-473 (517)
87 2jeo_A Uridine-cytidine kinase 99.8 2.4E-21 8.1E-26 194.5 -2.9 170 121-325 10-180 (245)
88 1tf7_A KAIC; homohexamer, hexa 99.8 3.9E-22 1.3E-26 222.0 -9.7 167 122-324 24-210 (525)
89 2o8b_B DNA mismatch repair pro 99.8 1.3E-20 4.4E-25 223.0 2.3 172 105-333 750-938 (1022)
90 2r6f_A Excinuclease ABC subuni 99.8 3.8E-19 1.3E-23 206.4 13.4 134 195-337 450-600 (972)
91 3thx_A DNA mismatch repair pro 99.8 3.1E-20 1.1E-24 217.4 4.1 153 122-336 648-812 (934)
92 2obl_A ESCN; ATPase, hydrolase 99.8 3.7E-21 1.3E-25 203.0 -5.1 191 105-336 45-254 (347)
93 2vf7_A UVRA2, excinuclease ABC 99.8 2E-19 6.9E-24 208.1 8.5 171 144-337 270-475 (842)
94 2ehv_A Hypothetical protein PH 99.8 3.2E-20 1.1E-24 185.0 -0.3 167 125-322 18-206 (251)
95 2ygr_A Uvrabc system protein A 99.8 7.5E-19 2.6E-23 204.6 10.8 135 194-337 466-617 (993)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3E-18 1E-22 159.2 10.6 81 244-326 54-142 (148)
97 4a74_A DNA repair and recombin 99.7 1.6E-19 5.6E-24 177.6 1.5 154 131-325 20-201 (231)
98 2eyu_A Twitching motility prot 99.7 3E-19 1E-23 181.3 2.1 133 124-323 15-147 (261)
99 3asz_A Uridine kinase; cytidin 99.7 9.3E-21 3.2E-25 185.0 -10.9 146 133-308 3-162 (211)
100 1rj9_A FTSY, signal recognitio 99.7 5.1E-19 1.7E-23 183.4 0.9 146 135-307 101-258 (304)
101 1ewq_A DNA mismatch repair pro 99.7 1.8E-18 6E-23 199.2 4.2 147 122-331 565-718 (765)
102 3thx_B DNA mismatch repair pro 99.7 1.2E-17 4.2E-22 195.0 9.5 145 122-318 659-805 (918)
103 2qnr_A Septin-2, protein NEDD5 99.7 3.4E-19 1.2E-23 184.6 -5.2 161 109-307 2-167 (301)
104 1wb9_A DNA mismatch repair pro 99.7 5.2E-18 1.8E-22 196.3 2.4 161 122-335 594-756 (800)
105 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.3E-17 4.4E-22 163.8 4.0 169 123-324 9-192 (235)
106 1nlf_A Regulatory protein REPA 99.7 1.7E-16 5.8E-21 162.1 11.5 149 133-307 27-181 (279)
107 1pzn_A RAD51, DNA repair and r 99.7 2.4E-18 8E-23 181.9 -3.2 167 124-331 118-309 (349)
108 3szr_A Interferon-induced GTP- 99.7 1.3E-18 4.5E-23 196.6 -6.8 191 105-338 10-238 (608)
109 3jvv_A Twitching mobility prot 99.6 1.1E-16 3.7E-21 169.4 3.8 127 132-324 119-246 (356)
110 2i3b_A HCR-ntpase, human cance 99.6 2E-18 6.7E-23 167.0 -9.9 155 136-330 1-169 (189)
111 1pui_A ENGB, probable GTP-bind 99.6 1.3E-17 4.5E-22 161.6 -4.3 175 106-300 4-203 (210)
112 2qag_C Septin-7; cell cycle, c 99.6 3E-17 1E-21 177.0 -3.5 163 105-307 11-177 (418)
113 2cvh_A DNA repair and recombin 99.6 3E-15 1E-19 146.0 10.5 152 124-324 7-185 (220)
114 3kta_B Chromosome segregation 99.6 5.4E-15 1.8E-19 140.7 9.4 79 244-325 61-145 (173)
115 1zp6_A Hypothetical protein AT 99.5 2.3E-17 7.9E-22 158.0 -9.8 148 133-302 6-156 (191)
116 2bdt_A BH3686; alpha-beta prot 99.5 5.5E-19 1.9E-23 169.5 -21.3 173 136-335 2-182 (189)
117 1s96_A Guanylate kinase, GMP k 99.5 2.3E-16 7.8E-21 156.0 -3.9 147 131-339 11-162 (219)
118 2bbw_A Adenylate kinase 4, AK4 99.5 5E-17 1.7E-21 162.9 -12.2 146 135-297 26-200 (246)
119 1lw7_A Transcriptional regulat 99.5 1.7E-17 6E-22 176.1 -16.6 170 125-322 157-342 (365)
120 2gza_A Type IV secretion syste 99.5 1.1E-14 3.9E-19 154.3 2.9 136 125-325 164-303 (361)
121 2qag_B Septin-6, protein NEDD5 99.5 1.7E-15 5.8E-20 163.0 -4.2 184 105-306 16-218 (427)
122 2ewv_A Twitching motility prot 99.4 1E-14 3.6E-19 155.2 1.0 131 124-322 126-257 (372)
123 1nij_A Hypothetical protein YJ 99.4 7.4E-17 2.5E-21 168.3 -15.5 157 137-316 5-197 (318)
124 2yhs_A FTSY, cell division pro 99.4 7E-15 2.4E-19 160.2 -0.8 179 126-335 283-477 (503)
125 1n0w_A DNA repair protein RAD5 99.4 9.1E-13 3.1E-17 130.3 14.2 152 131-324 19-209 (243)
126 3e70_C DPA, signal recognition 99.4 2.8E-14 9.5E-19 149.3 2.3 141 134-307 127-279 (328)
127 2rcn_A Probable GTPase ENGC; Y 99.4 5.6E-14 1.9E-18 148.2 4.6 138 125-294 205-345 (358)
128 1htw_A HI0065; nucleotide-bind 99.4 6.5E-15 2.2E-19 138.1 -3.6 79 122-205 19-97 (158)
129 3ec2_A DNA replication protein 99.4 9.2E-15 3.1E-19 139.0 -2.6 48 263-310 98-146 (180)
130 3auy_A DNA double-strand break 99.4 1.2E-12 4.1E-17 139.2 10.2 76 244-322 277-359 (371)
131 1udx_A The GTP-binding protein 99.4 8.4E-15 2.9E-19 157.8 -6.5 162 126-318 147-319 (416)
132 2f1r_A Molybdopterin-guanine d 99.4 4E-15 1.4E-19 141.4 -8.1 138 137-298 3-164 (171)
133 2yv5_A YJEQ protein; hydrolase 99.3 1.5E-13 5E-18 142.3 1.2 117 134-261 163-301 (302)
134 2kjq_A DNAA-related protein; s 99.3 8.4E-13 2.9E-17 122.4 6.0 95 125-309 30-127 (149)
135 2qm8_A GTPase/ATPase; G protei 99.3 6.9E-15 2.3E-19 154.6 -9.4 174 106-295 30-260 (337)
136 1w1w_A Structural maintenance 99.3 2.2E-12 7.7E-17 139.7 10.1 75 246-322 332-410 (430)
137 1odf_A YGR205W, hypothetical 3 99.3 5.2E-14 1.8E-18 144.8 -3.7 129 135-282 30-169 (290)
138 3lda_A DNA repair protein RAD5 99.3 2.3E-11 7.9E-16 130.4 13.7 158 125-325 166-364 (400)
139 1p9r_A General secretion pathw 99.3 3.7E-14 1.3E-18 153.0 -8.9 132 124-271 157-315 (418)
140 1sxj_E Activator 1 40 kDa subu 99.2 5.3E-12 1.8E-16 132.3 5.1 133 139-308 39-175 (354)
141 3c8u_A Fructokinase; YP_612366 99.2 2E-14 6.9E-19 140.2 -12.5 121 133-275 19-140 (208)
142 2oap_1 GSPE-2, type II secreti 99.2 5.5E-15 1.9E-19 163.4 -18.6 177 123-315 247-457 (511)
143 1u0l_A Probable GTPase ENGC; p 99.2 2.2E-12 7.4E-17 133.4 -0.5 104 133-250 166-294 (301)
144 2x8a_A Nuclear valosin-contain 99.1 2.6E-14 8.9E-19 145.9 -17.7 139 123-289 33-189 (274)
145 1t9h_A YLOQ, probable GTPase E 99.1 1.4E-11 4.7E-16 127.5 1.4 115 131-255 168-303 (307)
146 1in4_A RUVB, holliday junction 99.1 4.1E-13 1.4E-17 140.7 -10.4 148 123-295 31-194 (334)
147 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.4E-13 4.8E-18 147.0 -14.6 169 132-333 16-209 (392)
148 1lvg_A Guanylate kinase, GMP k 99.1 6.6E-14 2.2E-18 135.8 -16.8 57 258-323 116-173 (198)
149 1vma_A Cell division protein F 99.0 1.2E-10 4E-15 120.6 4.5 113 129-294 97-212 (306)
150 2r6a_A DNAB helicase, replicat 99.0 8.1E-10 2.8E-14 120.5 10.8 173 123-326 190-401 (454)
151 2dr3_A UPF0273 protein PH0284; 99.0 1.8E-09 6.2E-14 106.6 11.7 60 264-323 127-196 (247)
152 1ls1_A Signal recognition part 98.9 1.1E-09 3.8E-14 112.7 8.2 119 127-294 91-210 (295)
153 3k1j_A LON protease, ATP-depen 98.9 3E-11 1E-15 136.4 -5.9 159 122-292 46-227 (604)
154 2ius_A DNA translocase FTSK; n 98.9 8E-11 2.7E-15 129.5 -3.2 177 128-320 159-361 (512)
155 2zr9_A Protein RECA, recombina 98.9 2.5E-09 8.6E-14 112.7 8.4 148 131-331 56-237 (349)
156 3euj_A Chromosome partition pr 98.8 1E-09 3.4E-14 119.9 3.6 50 124-177 18-67 (483)
157 1sq5_A Pantothenate kinase; P- 98.8 1.8E-10 6E-15 119.4 -2.3 94 105-209 37-155 (308)
158 2px0_A Flagellar biosynthesis 98.8 4E-09 1.4E-13 108.6 7.5 141 134-329 103-247 (296)
159 3tr0_A Guanylate kinase, GMP k 98.7 7.1E-10 2.4E-14 106.7 -1.8 66 130-202 1-71 (205)
160 1iy2_A ATP-dependent metallopr 98.7 9E-12 3.1E-16 126.8 -17.2 123 123-268 62-190 (278)
161 1oix_A RAS-related protein RAB 98.7 1.9E-09 6.5E-14 103.0 -0.4 38 254-293 152-189 (191)
162 1ixz_A ATP-dependent metallopr 98.6 1.4E-11 4.9E-16 123.3 -17.2 127 123-274 38-170 (254)
163 3hr8_A Protein RECA; alpha and 98.5 2.5E-08 8.5E-13 105.1 3.2 32 131-162 56-87 (356)
164 3lnc_A Guanylate kinase, GMP k 98.5 2.2E-08 7.5E-13 98.7 2.3 40 123-162 14-54 (231)
165 1qhl_A Protein (cell division 98.5 5.1E-09 1.7E-13 103.7 -4.3 57 105-177 9-65 (227)
166 2ce7_A Cell division protein F 98.4 2.3E-07 7.8E-12 101.5 7.9 58 250-307 93-164 (476)
167 2f9l_A RAB11B, member RAS onco 98.4 8.9E-08 3E-12 91.6 3.5 37 256-294 130-166 (199)
168 4a1f_A DNAB helicase, replicat 98.4 4E-07 1.4E-11 95.2 8.2 127 124-303 34-162 (338)
169 2qtf_A Protein HFLX, GTP-bindi 98.4 1.9E-08 6.7E-13 106.5 -3.0 148 136-295 178-353 (364)
170 2xau_A PRE-mRNA-splicing facto 98.3 1.6E-07 5.5E-12 108.8 3.4 74 245-318 188-262 (773)
171 4eun_A Thermoresistant glucoki 98.3 1.6E-08 5.6E-13 97.4 -4.2 39 132-177 25-63 (200)
172 3nwj_A ATSK2; P loop, shikimat 98.3 7.5E-08 2.6E-12 96.7 -0.5 52 105-160 17-72 (250)
173 3bh0_A DNAB-like replicative h 98.3 2.7E-06 9.1E-11 88.1 11.0 35 124-158 56-90 (315)
174 2e87_A Hypothetical protein PH 98.2 9.4E-07 3.2E-11 93.1 5.6 58 245-304 229-287 (357)
175 3a00_A Guanylate kinase, GMP k 98.2 4.3E-07 1.5E-11 86.4 1.8 28 136-163 1-28 (186)
176 3uie_A Adenylyl-sulfate kinase 98.1 1.3E-07 4.4E-12 91.1 -2.4 51 123-177 12-64 (200)
177 1zu4_A FTSY; GTPase, signal re 98.1 4.3E-07 1.5E-11 94.4 1.2 76 126-204 95-185 (320)
178 3kta_A Chromosome segregation 98.1 1.7E-06 5.8E-11 81.5 3.8 38 125-163 14-53 (182)
179 2j41_A Guanylate kinase; GMP, 98.1 1.9E-06 6.7E-11 82.4 4.1 32 132-163 2-33 (207)
180 1v5w_A DMC1, meiotic recombina 98.1 2.1E-05 7.3E-10 82.3 12.4 142 126-306 111-273 (343)
181 2z43_A DNA repair and recombin 98.1 2.8E-05 9.7E-10 80.6 13.0 142 125-306 95-257 (324)
182 3vaa_A Shikimate kinase, SK; s 98.0 2.1E-06 7.1E-11 82.5 3.6 39 122-160 11-49 (199)
183 1kgd_A CASK, peripheral plasma 98.0 2.2E-06 7.6E-11 81.0 3.4 36 135-172 4-39 (180)
184 1jjv_A Dephospho-COA kinase; P 98.0 2E-06 6.9E-11 82.7 3.0 70 249-322 61-131 (206)
185 2z4s_A Chromosomal replication 98.0 8.5E-07 2.9E-11 96.2 0.2 70 264-333 193-264 (440)
186 2dhr_A FTSH; AAA+ protein, hex 98.0 2.4E-08 8.3E-13 109.8 -12.5 125 124-276 54-187 (499)
187 2vp4_A Deoxynucleoside kinase; 97.9 1.4E-06 5E-11 85.7 0.6 38 132-176 16-53 (230)
188 3t34_A Dynamin-related protein 97.9 1.3E-05 4.4E-10 84.3 7.6 57 248-306 155-212 (360)
189 3b9p_A CG5977-PA, isoform A; A 97.9 4.7E-05 1.6E-09 77.2 11.6 26 135-160 53-78 (297)
190 1fnn_A CDC6P, cell division co 97.9 5.7E-05 2E-09 79.1 12.2 43 264-307 124-169 (389)
191 3tau_A Guanylate kinase, GMP k 97.9 6.6E-06 2.3E-10 79.7 4.1 29 134-162 6-34 (208)
192 4e22_A Cytidylate kinase; P-lo 97.8 2E-06 6.7E-11 86.1 -1.1 54 134-190 25-95 (252)
193 1rz3_A Hypothetical protein rb 97.8 3.7E-06 1.3E-10 81.0 0.5 40 133-175 19-58 (201)
194 1svm_A Large T antigen; AAA+ f 97.7 5.8E-06 2E-10 87.7 1.3 44 123-172 156-199 (377)
195 3ney_A 55 kDa erythrocyte memb 97.7 1E-05 3.4E-10 78.2 2.7 27 135-161 18-44 (197)
196 2dy1_A Elongation factor G; tr 97.7 8E-06 2.8E-10 93.0 2.3 43 131-175 4-46 (665)
197 1knq_A Gluconate kinase; ALFA/ 97.7 8.4E-06 2.9E-10 76.1 1.9 34 135-175 7-40 (175)
198 2qt1_A Nicotinamide riboside k 97.7 2.1E-05 7E-10 75.7 4.5 29 132-160 17-45 (207)
199 3tqc_A Pantothenate kinase; bi 97.7 4.5E-06 1.5E-10 86.7 -0.7 40 123-162 73-118 (321)
200 3cf0_A Transitional endoplasmi 97.7 6.6E-05 2.3E-09 76.9 7.7 28 133-160 46-73 (301)
201 3cr8_A Sulfate adenylyltranfer 97.6 9.6E-06 3.3E-10 90.2 1.1 42 132-176 365-408 (552)
202 1ega_A Protein (GTP-binding pr 97.6 2.7E-05 9.3E-10 79.9 4.4 64 248-319 101-170 (301)
203 2q6t_A DNAB replication FORK h 97.6 0.00022 7.4E-09 77.2 11.5 169 124-322 188-396 (444)
204 1kag_A SKI, shikimate kinase I 97.6 2E-05 6.7E-10 73.2 2.7 27 135-161 3-29 (173)
205 3kl4_A SRP54, signal recogniti 97.6 6.2E-05 2.1E-09 81.1 6.7 37 135-174 96-132 (433)
206 3llm_A ATP-dependent RNA helic 97.5 1.6E-05 5.4E-10 78.4 -0.3 67 249-317 162-229 (235)
207 1w1w_A Structural maintenance 97.4 5.4E-05 1.9E-09 81.5 3.7 33 131-163 21-53 (430)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.3E-05 2.5E-09 68.6 3.9 31 127-158 15-45 (149)
209 2w58_A DNAI, primosome compone 97.4 6.7E-05 2.3E-09 71.6 3.7 51 264-314 114-166 (202)
210 1l8q_A Chromosomal replication 97.4 0.00018 6.1E-09 74.1 7.0 47 263-309 96-143 (324)
211 1ypw_A Transitional endoplasmi 97.4 0.00014 4.9E-09 84.5 6.8 32 131-162 233-264 (806)
212 2qby_A CDC6 homolog 1, cell di 97.4 4E-05 1.4E-09 79.9 1.5 27 135-161 44-70 (386)
213 2p67_A LAO/AO transport system 97.4 1.9E-05 6.3E-10 82.7 -1.2 50 123-175 43-92 (341)
214 1u94_A RECA protein, recombina 97.4 0.0029 9.9E-08 66.4 15.6 35 125-159 50-86 (356)
215 2pez_A Bifunctional 3'-phospho 97.3 4.5E-05 1.6E-09 71.5 1.2 37 135-175 4-42 (179)
216 4eaq_A DTMP kinase, thymidylat 97.3 9.7E-05 3.3E-09 72.7 3.0 37 126-162 13-52 (229)
217 3bgw_A DNAB-like replicative h 97.3 0.00068 2.3E-08 73.4 9.6 35 124-158 185-219 (444)
218 3ice_A Transcription terminati 97.2 4.5E-05 1.5E-09 80.6 -0.2 52 105-160 133-198 (422)
219 2i1q_A DNA repair and recombin 97.2 0.0013 4.4E-08 67.8 10.7 34 125-158 86-120 (322)
220 3lxx_A GTPase IMAP family memb 97.1 0.003 1E-07 61.8 12.1 25 138-162 31-55 (239)
221 2www_A Methylmalonic aciduria 97.1 9.1E-05 3.1E-09 77.7 1.1 39 135-176 73-111 (349)
222 3m6a_A ATP-dependent protease 97.1 7.8E-05 2.7E-09 82.9 0.3 47 124-174 97-143 (543)
223 1cke_A CK, MSSA, protein (cyti 97.1 0.00022 7.6E-09 69.1 3.4 25 136-160 5-29 (227)
224 2gj8_A MNME, tRNA modification 97.1 0.00062 2.1E-08 63.1 6.2 26 135-160 3-28 (172)
225 3h4m_A Proteasome-activating n 97.0 0.00088 3E-08 67.2 7.3 27 134-160 49-75 (285)
226 2qor_A Guanylate kinase; phosp 97.0 0.00023 7.7E-09 68.3 2.7 29 133-161 9-37 (204)
227 1m7g_A Adenylylsulfate kinase; 97.0 0.00011 3.8E-09 70.9 0.1 40 133-175 22-63 (211)
228 3qks_A DNA double-strand break 97.0 0.00038 1.3E-08 67.1 3.9 30 128-158 16-45 (203)
229 3bos_A Putative DNA replicatio 97.0 0.00074 2.5E-08 65.3 5.8 45 264-308 103-149 (242)
230 1np6_A Molybdopterin-guanine d 96.9 0.00035 1.2E-08 65.9 2.9 39 137-175 7-45 (174)
231 1y63_A LMAJ004144AAA protein; 96.9 0.00042 1.4E-08 65.3 3.3 32 128-159 2-33 (184)
232 1mky_A Probable GTP-binding pr 96.9 0.001 3.4E-08 71.8 6.5 39 138-176 182-229 (439)
233 1m2o_B GTP-binding protein SAR 96.9 0.001 3.5E-08 62.7 5.7 35 124-159 12-46 (190)
234 2if2_A Dephospho-COA kinase; a 96.8 0.00048 1.6E-08 65.7 3.1 21 138-158 3-23 (204)
235 2yvu_A Probable adenylyl-sulfa 96.8 0.00034 1.2E-08 65.8 1.9 30 134-163 11-40 (186)
236 2ffh_A Protein (FFH); SRP54, s 96.8 0.00031 1.1E-08 75.5 1.5 45 127-176 91-135 (425)
237 3d8b_A Fidgetin-like protein 1 96.8 0.005 1.7E-07 64.4 10.7 27 134-160 115-141 (357)
238 1xp8_A RECA protein, recombina 96.7 0.019 6.6E-07 60.4 14.8 28 131-158 69-96 (366)
239 2p5t_B PEZT; postsegregational 96.7 0.0004 1.4E-08 69.1 1.6 40 132-176 28-67 (253)
240 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00027 9.1E-09 74.0 0.2 39 123-161 9-49 (359)
241 1q57_A DNA primase/helicase; d 96.7 0.0099 3.4E-07 65.1 12.8 34 125-158 231-264 (503)
242 1f6b_A SAR1; gtpases, N-termin 96.7 0.00049 1.7E-08 65.4 1.9 36 123-159 13-48 (198)
243 2b8t_A Thymidine kinase; deoxy 96.7 0.0019 6.6E-08 63.3 6.1 53 265-322 89-150 (223)
244 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.007 2.4E-07 59.5 9.8 26 135-160 38-63 (262)
245 1j8m_F SRP54, signal recogniti 96.6 0.00025 8.7E-09 72.6 -0.8 46 127-176 89-135 (297)
246 3t61_A Gluconokinase; PSI-biol 96.6 0.00087 3E-08 63.9 2.9 25 136-160 18-42 (202)
247 3cm0_A Adenylate kinase; ATP-b 96.5 0.0011 3.8E-08 62.0 3.2 25 135-159 3-27 (186)
248 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.016 5.4E-07 59.7 12.2 27 134-160 43-69 (322)
249 2wji_A Ferrous iron transport 96.5 0.0013 4.4E-08 60.3 3.5 24 138-161 5-28 (165)
250 1sxj_C Activator 1 40 kDa subu 96.5 0.00037 1.3E-08 72.3 -0.2 40 123-162 31-72 (340)
251 2qgz_A Helicase loader, putati 96.5 0.0016 5.6E-08 66.8 4.4 52 263-314 212-265 (308)
252 1qhx_A CPT, protein (chloramph 96.5 0.0015 5.2E-08 60.5 3.8 26 136-161 3-28 (178)
253 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0013 4.3E-08 70.1 3.5 45 131-175 17-69 (396)
254 3kb2_A SPBC2 prophage-derived 96.5 0.0015 5E-08 60.0 3.4 23 138-160 3-25 (173)
255 2v1u_A Cell division control p 96.4 0.0026 9E-08 66.0 5.5 26 135-160 43-68 (387)
256 3auy_A DNA double-strand break 96.4 0.0017 5.7E-08 68.5 3.9 31 126-157 16-46 (371)
257 1q3t_A Cytidylate kinase; nucl 96.4 0.0016 5.6E-08 63.8 3.6 27 134-160 14-40 (236)
258 1lv7_A FTSH; alpha/beta domain 96.3 0.0015 5E-08 64.7 2.5 33 127-161 38-70 (257)
259 1kht_A Adenylate kinase; phosp 96.3 0.0023 7.8E-08 59.7 3.7 25 136-160 3-27 (192)
260 2qag_A Septin-2, protein NEDD5 96.2 0.00041 1.4E-08 73.0 -1.8 47 105-162 17-63 (361)
261 2zej_A Dardarin, leucine-rich 96.2 0.002 6.7E-08 60.2 3.0 23 138-160 4-26 (184)
262 2wjg_A FEOB, ferrous iron tran 96.2 0.0023 8E-08 59.4 3.5 22 138-159 9-30 (188)
263 3r20_A Cytidylate kinase; stru 96.2 0.0023 8E-08 63.1 3.5 25 136-160 9-33 (233)
264 2rhm_A Putative kinase; P-loop 96.2 0.0024 8.3E-08 59.8 3.3 25 135-159 4-28 (193)
265 2ze6_A Isopentenyl transferase 96.1 0.0025 8.6E-08 63.4 3.3 23 138-160 3-25 (253)
266 1gvn_B Zeta; postsegregational 96.1 0.0029 9.8E-08 64.3 3.7 35 135-174 32-66 (287)
267 3cmw_A Protein RECA, recombina 96.1 0.013 4.4E-07 72.5 10.0 29 132-160 728-756 (1706)
268 3lw7_A Adenylate kinase relate 96.1 0.0029 1E-07 57.7 3.3 19 138-156 3-21 (179)
269 1vht_A Dephospho-COA kinase; s 96.0 0.0033 1.1E-07 60.5 3.6 24 135-158 3-26 (218)
270 3trf_A Shikimate kinase, SK; a 96.0 0.0034 1.2E-07 58.6 3.6 26 135-160 4-29 (185)
271 2v54_A DTMP kinase, thymidylat 96.0 0.004 1.4E-07 58.9 3.9 26 135-160 3-28 (204)
272 1ex7_A Guanylate kinase; subst 96.0 0.0033 1.1E-07 59.8 3.2 24 138-161 3-26 (186)
273 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 59.0 3.5 23 138-160 2-24 (205)
274 3iij_A Coilin-interacting nucl 96.0 0.0034 1.2E-07 58.5 3.1 25 135-159 10-34 (180)
275 3io5_A Recombination and repai 95.9 0.026 8.9E-07 58.1 9.8 27 131-158 24-51 (333)
276 2plr_A DTMP kinase, probable t 95.9 0.0043 1.5E-07 58.9 3.7 27 135-161 3-29 (213)
277 1xjc_A MOBB protein homolog; s 95.9 0.0031 1.1E-07 59.1 2.4 26 137-162 5-30 (169)
278 1ly1_A Polynucleotide kinase; 95.9 0.0045 1.5E-07 57.1 3.5 22 137-158 3-24 (181)
279 2wwf_A Thymidilate kinase, put 95.8 0.0046 1.6E-07 58.9 3.5 26 135-160 9-34 (212)
280 1via_A Shikimate kinase; struc 95.8 0.0042 1.5E-07 57.6 3.2 23 138-160 6-28 (175)
281 1uf9_A TT1252 protein; P-loop, 95.8 0.0046 1.6E-07 58.4 3.5 24 136-159 8-31 (203)
282 2c95_A Adenylate kinase 1; tra 95.8 0.0045 1.5E-07 58.1 3.4 26 135-160 8-33 (196)
283 2r8r_A Sensor protein; KDPD, P 95.8 0.0024 8.3E-08 62.6 1.6 74 261-341 80-175 (228)
284 2qp9_X Vacuolar protein sortin 95.8 0.029 9.9E-07 58.5 9.9 26 135-160 83-108 (355)
285 1gtv_A TMK, thymidylate kinase 95.8 0.0022 7.6E-08 61.2 1.0 25 138-162 2-26 (214)
286 3hu3_A Transitional endoplasmi 95.8 0.012 4.2E-07 64.3 7.0 28 133-160 235-262 (489)
287 3cmw_A Protein RECA, recombina 95.8 0.085 2.9E-06 65.4 15.0 153 125-330 370-558 (1706)
288 1nn5_A Similar to deoxythymidy 95.7 0.0054 1.9E-07 58.4 3.5 27 134-160 7-33 (215)
289 1tev_A UMP-CMP kinase; ploop, 95.7 0.0058 2E-07 57.0 3.6 24 136-159 3-26 (196)
290 1nks_A Adenylate kinase; therm 95.7 0.0055 1.9E-07 57.1 3.2 24 138-161 3-26 (194)
291 3k53_A Ferrous iron transport 95.5 0.0056 1.9E-07 61.3 3.0 23 138-160 5-27 (271)
292 3ake_A Cytidylate kinase; CMP 95.5 0.0069 2.4E-07 57.3 3.2 23 138-160 4-26 (208)
293 1aky_A Adenylate kinase; ATP:A 95.4 0.0083 2.9E-07 57.8 3.8 26 135-160 3-28 (220)
294 2bwj_A Adenylate kinase 5; pho 95.4 0.0076 2.6E-07 56.6 3.4 27 134-160 10-36 (199)
295 2z0h_A DTMP kinase, thymidylat 95.4 0.0079 2.7E-07 56.4 3.4 23 138-160 2-24 (197)
296 3vfd_A Spastin; ATPase, microt 95.4 0.088 3E-06 55.4 11.9 26 135-160 147-172 (389)
297 2vli_A Antibiotic resistance p 95.4 0.006 2.1E-07 56.6 2.4 26 135-160 4-29 (183)
298 4ag6_A VIRB4 ATPase, type IV s 95.3 0.0054 1.9E-07 64.8 2.1 44 265-308 262-308 (392)
299 2ged_A SR-beta, signal recogni 95.3 0.0079 2.7E-07 56.1 3.1 23 138-160 50-72 (193)
300 3cmu_A Protein RECA, recombina 95.3 0.029 1E-06 70.3 8.9 35 125-159 370-406 (2050)
301 1zd8_A GTP:AMP phosphotransfer 95.3 0.009 3.1E-07 57.9 3.4 26 135-160 6-31 (227)
302 1z2a_A RAS-related protein RAB 95.3 0.0085 2.9E-07 54.0 3.0 23 138-160 7-29 (168)
303 3ihw_A Centg3; RAS, centaurin, 95.3 0.02 6.7E-07 53.4 5.6 22 138-159 22-43 (184)
304 2nzj_A GTP-binding protein REM 95.2 0.0096 3.3E-07 54.2 3.3 23 138-160 6-28 (175)
305 1ko7_A HPR kinase/phosphatase; 95.2 0.014 4.8E-07 60.0 4.8 35 124-159 133-167 (314)
306 2erx_A GTP-binding protein DI- 95.2 0.0098 3.3E-07 53.7 3.3 22 138-159 5-26 (172)
307 2cdn_A Adenylate kinase; phosp 95.2 0.011 3.8E-07 56.0 3.8 26 135-160 19-44 (201)
308 1zuh_A Shikimate kinase; alpha 95.2 0.011 3.6E-07 54.4 3.5 24 136-159 7-30 (168)
309 3fb4_A Adenylate kinase; psych 95.2 0.0099 3.4E-07 56.9 3.4 22 138-159 2-23 (216)
310 3q72_A GTP-binding protein RAD 95.2 0.008 2.7E-07 54.3 2.5 23 138-160 4-26 (166)
311 2pbr_A DTMP kinase, thymidylat 95.2 0.011 3.6E-07 55.2 3.4 23 138-160 2-24 (195)
312 1kao_A RAP2A; GTP-binding prot 95.2 0.0098 3.4E-07 53.3 3.1 23 138-160 5-27 (167)
313 2ce2_X GTPase HRAS; signaling 95.2 0.009 3.1E-07 53.4 2.8 23 138-160 5-27 (166)
314 1u8z_A RAS-related protein RAL 95.1 0.0097 3.3E-07 53.4 3.0 23 138-160 6-28 (168)
315 2dyk_A GTP-binding protein; GT 95.1 0.01 3.4E-07 53.2 3.1 23 138-160 3-25 (161)
316 3b1v_A Ferrous iron uptake tra 95.1 0.015 5E-07 58.6 4.6 23 138-160 5-27 (272)
317 1e6c_A Shikimate kinase; phosp 95.1 0.0093 3.2E-07 54.7 2.9 23 138-160 4-26 (173)
318 2iyv_A Shikimate kinase, SK; t 95.1 0.0093 3.2E-07 55.5 2.8 24 137-160 3-26 (184)
319 3q85_A GTP-binding protein REM 95.1 0.011 3.8E-07 53.5 3.2 22 139-160 5-26 (169)
320 1ukz_A Uridylate kinase; trans 95.1 0.012 4.1E-07 55.7 3.6 24 136-159 15-38 (203)
321 1z0j_A RAB-22, RAS-related pro 95.1 0.011 3.7E-07 53.4 3.1 23 138-160 8-30 (170)
322 1z08_A RAS-related protein RAB 95.1 0.011 3.7E-07 53.5 3.1 23 138-160 8-30 (170)
323 2pt5_A Shikimate kinase, SK; a 95.1 0.012 4.3E-07 53.7 3.5 22 138-159 2-23 (168)
324 3dl0_A Adenylate kinase; phosp 95.0 0.012 4E-07 56.4 3.4 23 138-160 2-24 (216)
325 1zak_A Adenylate kinase; ATP:A 95.0 0.01 3.4E-07 57.3 2.9 26 135-160 4-29 (222)
326 1ek0_A Protein (GTP-binding pr 95.0 0.011 3.8E-07 53.3 3.0 23 138-160 5-27 (170)
327 1jal_A YCHF protein; nucleotid 95.0 0.018 6.2E-07 60.5 5.0 24 136-159 2-25 (363)
328 1qf9_A UMP/CMP kinase, protein 95.0 0.012 4.2E-07 54.7 3.4 24 136-159 6-29 (194)
329 3tw8_B RAS-related protein RAB 95.0 0.01 3.5E-07 54.2 2.8 23 138-160 11-33 (181)
330 1g16_A RAS-related protein SEC 95.0 0.01 3.6E-07 53.5 2.8 23 138-160 5-27 (170)
331 1xx6_A Thymidine kinase; NESG, 95.0 0.042 1.4E-06 52.4 7.1 53 265-322 81-142 (191)
332 1c1y_A RAS-related protein RAP 95.0 0.011 3.9E-07 53.1 3.0 23 138-160 5-27 (167)
333 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.012 3.9E-07 53.8 3.1 23 138-160 9-31 (177)
334 1ky3_A GTP-binding protein YPT 95.0 0.012 3.9E-07 53.9 3.1 23 138-160 10-32 (182)
335 2lkc_A Translation initiation 95.0 0.015 5.2E-07 53.0 3.8 26 135-160 7-32 (178)
336 1fzq_A ADP-ribosylation factor 95.0 0.0098 3.4E-07 55.2 2.5 23 137-159 17-39 (181)
337 1svi_A GTP-binding protein YSX 94.9 0.011 3.8E-07 55.1 2.8 23 138-160 25-47 (195)
338 3lxw_A GTPase IMAP family memb 94.9 0.012 4.2E-07 58.1 3.2 24 138-161 23-46 (247)
339 2fn4_A P23, RAS-related protei 94.9 0.011 3.9E-07 53.9 2.8 22 138-159 11-32 (181)
340 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.9E-07 58.0 3.7 26 135-160 3-28 (260)
341 3pqc_A Probable GTP-binding pr 94.9 0.012 4E-07 54.6 2.8 23 138-160 25-47 (195)
342 1uj2_A Uridine-cytidine kinase 94.9 0.014 4.7E-07 57.8 3.4 24 137-160 23-46 (252)
343 2j9r_A Thymidine kinase; TK1, 94.9 0.073 2.5E-06 51.6 8.4 53 265-322 101-162 (214)
344 3tlx_A Adenylate kinase 2; str 94.8 0.016 5.3E-07 57.2 3.7 25 135-159 28-52 (243)
345 2grj_A Dephospho-COA kinase; T 94.8 0.015 5E-07 55.5 3.4 24 136-159 12-35 (192)
346 1r2q_A RAS-related protein RAB 94.8 0.014 4.6E-07 52.6 3.0 22 138-159 8-29 (170)
347 3clv_A RAB5 protein, putative; 94.8 0.014 4.6E-07 54.3 3.1 23 138-160 9-31 (208)
348 3dm5_A SRP54, signal recogniti 94.8 0.21 7.3E-06 53.7 12.7 28 135-162 99-126 (443)
349 2cxx_A Probable GTP-binding pr 94.8 0.013 4.3E-07 54.2 2.8 22 139-160 4-25 (190)
350 4dsu_A GTPase KRAS, isoform 2B 94.8 0.014 4.8E-07 53.8 3.1 23 138-160 6-28 (189)
351 3a8t_A Adenylate isopentenyltr 94.8 0.024 8.1E-07 58.9 5.0 26 135-160 39-64 (339)
352 2hxs_A RAB-26, RAS-related pro 94.8 0.015 5.3E-07 53.0 3.3 23 138-160 8-30 (178)
353 1upt_A ARL1, ADP-ribosylation 94.8 0.014 4.9E-07 52.7 3.0 22 138-159 9-30 (171)
354 2qmh_A HPR kinase/phosphorylas 94.8 0.023 8E-07 54.6 4.5 25 135-159 33-57 (205)
355 3bc1_A RAS-related protein RAB 94.7 0.014 4.9E-07 53.8 3.0 23 138-160 13-35 (195)
356 2oil_A CATX-8, RAS-related pro 94.7 0.014 4.9E-07 54.3 3.0 23 138-160 27-49 (193)
357 1r8s_A ADP-ribosylation factor 94.7 0.015 5.1E-07 52.3 3.0 21 139-159 3-23 (164)
358 2y8e_A RAB-protein 6, GH09086P 94.6 0.015 5.1E-07 53.0 2.8 22 138-159 16-37 (179)
359 3t1o_A Gliding protein MGLA; G 94.6 0.018 6.1E-07 53.4 3.4 25 138-162 16-40 (198)
360 2g6b_A RAS-related protein RAB 94.6 0.016 5.5E-07 53.0 3.0 23 138-160 12-34 (180)
361 1a7j_A Phosphoribulokinase; tr 94.6 0.0093 3.2E-07 60.6 1.5 26 135-160 4-29 (290)
362 2a9k_A RAS-related protein RAL 94.6 0.016 5.5E-07 53.1 3.0 23 138-160 20-42 (187)
363 1wf3_A GTP-binding protein; GT 94.6 0.017 5.9E-07 58.9 3.5 23 138-160 9-31 (301)
364 1z0f_A RAB14, member RAS oncog 94.6 0.017 5.7E-07 52.6 3.0 23 138-160 17-39 (179)
365 1moz_A ARL1, ADP-ribosylation 94.6 0.01 3.5E-07 54.6 1.5 23 136-158 18-40 (183)
366 3con_A GTPase NRAS; structural 94.6 0.017 5.8E-07 53.6 3.0 23 138-160 23-45 (190)
367 2f6r_A COA synthase, bifunctio 94.5 0.017 5.9E-07 58.2 3.2 23 136-158 75-97 (281)
368 2efe_B Small GTP-binding prote 94.5 0.018 6.1E-07 52.7 3.1 23 138-160 14-36 (181)
369 3t5d_A Septin-7; GTP-binding p 94.5 0.015 5E-07 58.3 2.6 23 138-160 10-32 (274)
370 4fcw_A Chaperone protein CLPB; 94.5 0.019 6.6E-07 57.9 3.5 27 136-162 47-73 (311)
371 3iev_A GTP-binding protein ERA 94.5 0.019 6.6E-07 58.7 3.5 23 138-160 12-34 (308)
372 1jbk_A CLPB protein; beta barr 94.5 0.023 7.9E-07 52.0 3.7 26 135-160 42-67 (195)
373 2xb4_A Adenylate kinase; ATP-b 94.5 0.02 7E-07 55.4 3.5 22 138-159 2-23 (223)
374 3be4_A Adenylate kinase; malar 94.4 0.02 6.9E-07 55.1 3.4 26 135-160 4-29 (217)
375 2bme_A RAB4A, RAS-related prot 94.4 0.018 6E-07 53.1 2.8 23 138-160 12-34 (186)
376 1nrj_B SR-beta, signal recogni 94.4 0.019 6.4E-07 54.7 3.0 23 138-160 14-36 (218)
377 2bov_A RAla, RAS-related prote 94.4 0.019 6.4E-07 53.8 3.0 23 138-160 16-38 (206)
378 3iby_A Ferrous iron transport 94.4 0.018 6.2E-07 57.3 3.0 23 138-160 3-25 (256)
379 1vg8_A RAS-related protein RAB 94.4 0.019 6.6E-07 53.9 3.1 23 138-160 10-32 (207)
380 2gf9_A RAS-related protein RAB 94.4 0.02 6.7E-07 53.2 3.0 23 138-160 24-46 (189)
381 3tkl_A RAS-related protein RAB 94.3 0.02 6.9E-07 53.2 3.0 23 138-160 18-40 (196)
382 2gf0_A GTP-binding protein DI- 94.3 0.019 6.5E-07 53.5 2.8 22 138-159 10-31 (199)
383 1njg_A DNA polymerase III subu 94.3 0.0075 2.6E-07 57.5 -0.0 24 137-160 46-69 (250)
384 2xtp_A GTPase IMAP family memb 94.3 0.02 6.8E-07 56.5 3.1 23 138-160 24-46 (260)
385 1ksh_A ARF-like protein 2; sma 94.3 0.02 6.9E-07 52.8 2.9 25 136-160 18-42 (186)
386 3cbq_A GTP-binding protein REM 94.3 0.016 5.4E-07 54.7 2.2 22 138-159 25-46 (195)
387 1m7b_A RND3/RHOE small GTP-bin 94.3 0.02 6.7E-07 53.1 2.8 23 138-160 9-31 (184)
388 2fg5_A RAB-22B, RAS-related pr 94.3 0.02 6.8E-07 53.5 2.8 23 138-160 25-47 (192)
389 3kkq_A RAS-related protein M-R 94.3 0.021 7.3E-07 52.5 3.0 23 138-160 20-42 (183)
390 2dby_A GTP-binding protein; GD 94.3 0.02 6.7E-07 60.3 3.0 21 139-159 4-24 (368)
391 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.022 7.4E-07 52.3 3.0 22 138-159 7-28 (186)
392 1zbd_A Rabphilin-3A; G protein 94.2 0.024 8.1E-07 53.3 3.2 23 138-160 10-32 (203)
393 3v9p_A DTMP kinase, thymidylat 94.2 0.021 7.3E-07 55.9 2.9 28 134-161 23-50 (227)
394 1z06_A RAS-related protein RAB 94.2 0.023 7.9E-07 52.8 3.1 22 138-159 22-43 (189)
395 2wsm_A Hydrogenase expression/ 94.2 0.023 7.7E-07 54.3 3.1 24 137-160 31-54 (221)
396 1e4v_A Adenylate kinase; trans 94.2 0.024 8E-07 54.4 3.2 22 138-159 2-23 (214)
397 1ak2_A Adenylate kinase isoenz 94.2 0.029 9.8E-07 54.6 3.8 26 135-160 15-40 (233)
398 4edh_A DTMP kinase, thymidylat 94.2 0.028 9.6E-07 54.4 3.7 28 135-162 5-32 (213)
399 2cjw_A GTP-binding protein GEM 94.2 0.023 7.9E-07 53.4 3.0 22 138-159 8-29 (192)
400 1ltq_A Polynucleotide kinase; 94.1 0.026 8.8E-07 57.0 3.5 23 137-159 3-25 (301)
401 3oes_A GTPase rhebl1; small GT 94.1 0.022 7.5E-07 53.6 2.8 23 138-160 26-48 (201)
402 3a1s_A Iron(II) transport prot 94.1 0.025 8.5E-07 56.3 3.3 23 138-160 7-29 (258)
403 2orv_A Thymidine kinase; TP4A 94.1 0.17 5.7E-06 49.7 9.1 53 264-322 89-150 (234)
404 2il1_A RAB12; G-protein, GDP, 94.1 0.022 7.5E-07 53.3 2.7 22 139-160 29-50 (192)
405 3bwd_D RAC-like GTP-binding pr 94.1 0.025 8.5E-07 51.8 3.0 23 138-160 10-32 (182)
406 4dhe_A Probable GTP-binding pr 94.1 0.013 4.4E-07 56.0 1.1 23 138-160 31-53 (223)
407 2a5j_A RAS-related protein RAB 94.1 0.025 8.4E-07 52.7 3.0 22 139-160 24-45 (191)
408 3dz8_A RAS-related protein RAB 94.1 0.023 7.8E-07 53.0 2.8 23 138-160 25-47 (191)
409 3t5g_A GTP-binding protein RHE 94.1 0.023 7.9E-07 52.1 2.8 22 138-159 8-29 (181)
410 3i8s_A Ferrous iron transport 94.0 0.024 8.2E-07 56.9 3.1 23 138-160 5-27 (274)
411 2o52_A RAS-related protein RAB 94.0 0.025 8.5E-07 53.3 3.0 22 138-159 27-48 (200)
412 1zj6_A ADP-ribosylation factor 94.0 0.025 8.6E-07 52.4 3.0 23 137-159 17-39 (187)
413 3umf_A Adenylate kinase; rossm 94.0 0.031 1E-06 54.4 3.6 25 135-159 28-52 (217)
414 1zd9_A ADP-ribosylation factor 94.0 0.026 8.8E-07 52.5 3.0 23 138-160 24-46 (188)
415 2bcg_Y Protein YP2, GTP-bindin 94.0 0.024 8.2E-07 53.4 2.8 23 138-160 10-32 (206)
416 2atv_A RERG, RAS-like estrogen 94.0 0.026 9.1E-07 52.7 3.1 23 138-160 30-52 (196)
417 1x3s_A RAS-related protein RAB 94.0 0.026 9E-07 52.2 3.0 23 138-160 17-39 (195)
418 2h57_A ADP-ribosylation factor 94.0 0.019 6.6E-07 53.3 2.1 23 138-160 23-45 (190)
419 3reg_A RHO-like small GTPase; 94.0 0.026 9E-07 52.6 3.0 23 138-160 25-47 (194)
420 1jwy_B Dynamin A GTPase domain 94.0 0.027 9.1E-07 57.2 3.2 23 138-160 26-48 (315)
421 4bas_A ADP-ribosylation factor 94.0 0.025 8.6E-07 52.6 2.8 23 138-160 19-41 (199)
422 3cph_A RAS-related protein SEC 93.9 0.026 9E-07 53.2 3.0 23 138-160 22-44 (213)
423 2qu8_A Putative nucleolar GTP- 93.9 0.025 8.7E-07 54.5 2.9 22 138-159 31-52 (228)
424 3d3q_A TRNA delta(2)-isopenten 93.9 0.028 9.7E-07 58.4 3.4 25 137-161 8-32 (340)
425 2ew1_A RAS-related protein RAB 93.9 0.025 8.5E-07 53.8 2.8 23 138-160 28-50 (201)
426 2h17_A ADP-ribosylation factor 93.9 0.023 8E-07 52.4 2.5 22 138-159 23-44 (181)
427 2p5s_A RAS and EF-hand domain 93.9 0.027 9.3E-07 52.9 3.0 23 138-160 30-52 (199)
428 2f7s_A C25KG, RAS-related prot 93.9 0.03 1E-06 53.2 3.3 23 138-160 27-49 (217)
429 3lv8_A DTMP kinase, thymidylat 93.9 0.032 1.1E-06 55.0 3.5 28 135-162 26-53 (236)
430 3zvl_A Bifunctional polynucleo 93.9 0.029 9.9E-07 59.9 3.5 26 134-159 256-281 (416)
431 2p65_A Hypothetical protein PF 93.8 0.028 9.6E-07 51.5 2.9 27 135-161 42-68 (187)
432 2fv8_A H6, RHO-related GTP-bin 93.8 0.028 9.4E-07 53.3 2.8 23 138-160 27-49 (207)
433 2iwr_A Centaurin gamma 1; ANK 93.8 0.023 7.9E-07 51.9 2.2 22 138-159 9-30 (178)
434 3llu_A RAS-related GTP-binding 93.8 0.032 1.1E-06 52.3 3.3 24 138-161 22-45 (196)
435 3exa_A TRNA delta(2)-isopenten 93.8 0.038 1.3E-06 56.8 4.0 25 136-160 3-27 (322)
436 2q3h_A RAS homolog gene family 93.8 0.033 1.1E-06 52.2 3.2 23 138-160 22-44 (201)
437 3tqf_A HPR(Ser) kinase; transf 93.7 0.05 1.7E-06 51.1 4.3 25 135-159 15-39 (181)
438 2h92_A Cytidylate kinase; ross 93.7 0.031 1.1E-06 53.4 3.1 25 136-160 3-27 (219)
439 3c5c_A RAS-like protein 12; GD 93.7 0.032 1.1E-06 52.0 3.1 23 138-160 23-45 (187)
440 2j1l_A RHO-related GTP-binding 93.7 0.032 1.1E-06 53.2 3.1 22 138-159 36-57 (214)
441 3cmu_A Protein RECA, recombina 93.7 0.45 1.5E-05 59.9 13.9 35 123-157 1066-1102(2050)
442 2aka_B Dynamin-1; fusion prote 93.7 0.028 9.7E-07 56.4 2.8 23 138-160 28-50 (299)
443 1sky_E F1-ATPase, F1-ATP synth 93.7 0.038 1.3E-06 59.8 3.9 35 125-160 141-175 (473)
444 1gwn_A RHO-related GTP-binding 93.7 0.03 1E-06 53.3 2.8 23 138-160 30-52 (205)
445 2fh5_B SR-beta, signal recogni 93.6 0.032 1.1E-06 52.8 3.0 23 138-160 9-31 (214)
446 1sxj_D Activator 1 41 kDa subu 93.6 0.015 5E-07 59.8 0.5 42 265-308 133-174 (353)
447 4tmk_A Protein (thymidylate ki 93.6 0.039 1.3E-06 53.5 3.5 28 135-162 2-29 (213)
448 2ocp_A DGK, deoxyguanosine kin 93.6 0.038 1.3E-06 54.0 3.5 26 136-161 2-27 (241)
449 2zts_A Putative uncharacterize 93.6 0.047 1.6E-06 52.8 4.1 60 263-322 133-206 (251)
450 3tmk_A Thymidylate kinase; pho 93.5 0.04 1.4E-06 53.5 3.5 28 135-162 4-31 (216)
451 3crm_A TRNA delta(2)-isopenten 93.5 0.038 1.3E-06 57.0 3.5 24 137-160 6-29 (323)
452 2fu5_C RAS-related protein RAB 93.5 0.023 7.8E-07 52.3 1.6 22 138-159 10-31 (183)
453 2gco_A H9, RHO-related GTP-bin 93.5 0.033 1.1E-06 52.5 2.8 22 139-160 28-49 (201)
454 3def_A T7I23.11 protein; chlor 93.5 0.035 1.2E-06 55.1 3.1 23 138-160 38-60 (262)
455 3ld9_A DTMP kinase, thymidylat 93.4 0.046 1.6E-06 53.4 3.7 27 135-161 20-46 (223)
456 2b6h_A ADP-ribosylation factor 93.4 0.031 1.1E-06 52.3 2.5 24 136-159 29-52 (192)
457 2atx_A Small GTP binding prote 93.4 0.037 1.3E-06 51.5 2.8 22 138-159 20-41 (194)
458 1h65_A Chloroplast outer envel 93.3 0.037 1.3E-06 55.1 3.0 23 138-160 41-63 (270)
459 3sr0_A Adenylate kinase; phosp 93.3 0.045 1.5E-06 52.7 3.4 22 138-159 2-23 (206)
460 2g3y_A GTP-binding protein GEM 93.3 0.044 1.5E-06 52.8 3.3 22 138-159 39-60 (211)
461 1p5z_B DCK, deoxycytidine kina 93.2 0.03 1E-06 55.6 2.0 26 135-160 23-48 (263)
462 2hf9_A Probable hydrogenase ni 93.2 0.042 1.5E-06 52.6 3.0 23 137-159 39-61 (226)
463 2r62_A Cell division protease 93.1 0.016 5.4E-07 57.4 -0.2 22 139-160 47-68 (268)
464 4djt_A GTP-binding nuclear pro 93.0 0.021 7.2E-07 54.3 0.6 23 138-160 13-35 (218)
465 2hup_A RAS-related protein RAB 93.0 0.044 1.5E-06 51.7 2.8 23 138-160 31-53 (201)
466 3cpj_B GTP-binding protein YPT 93.0 0.047 1.6E-06 52.3 3.1 23 138-160 15-37 (223)
467 3foz_A TRNA delta(2)-isopenten 92.8 0.062 2.1E-06 55.1 3.8 25 136-160 10-34 (316)
468 3cnl_A YLQF, putative uncharac 92.8 0.053 1.8E-06 54.2 3.2 25 137-161 100-124 (262)
469 2x77_A ADP-ribosylation factor 92.8 0.032 1.1E-06 51.7 1.5 22 137-158 23-44 (189)
470 2yc2_C IFT27, small RAB-relate 92.8 0.022 7.6E-07 53.3 0.4 22 138-159 22-43 (208)
471 1ypw_A Transitional endoplasmi 92.8 0.021 7.3E-07 66.2 0.3 33 129-161 504-536 (806)
472 4gzl_A RAS-related C3 botulinu 92.8 0.049 1.7E-06 51.5 2.8 22 138-159 32-53 (204)
473 4dcu_A GTP-binding protein ENG 92.8 0.044 1.5E-06 59.1 2.7 22 138-159 25-46 (456)
474 3n70_A Transport activator; si 92.7 0.058 2E-06 48.4 3.0 44 265-310 76-119 (145)
475 3q3j_B RHO-related GTP-binding 92.7 0.056 1.9E-06 51.6 3.0 22 138-159 29-50 (214)
476 2j0v_A RAC-like GTP-binding pr 92.6 0.054 1.8E-06 51.2 2.8 23 138-160 11-33 (212)
477 3eph_A TRNA isopentenyltransfe 92.5 0.065 2.2E-06 56.9 3.5 24 137-160 3-26 (409)
478 3euj_A Chromosome partition pr 92.3 0.18 6.2E-06 54.8 6.8 71 245-322 377-464 (483)
479 2orw_A Thymidine kinase; TMTK, 92.2 0.082 2.8E-06 49.8 3.5 53 265-322 76-137 (184)
480 3syl_A Protein CBBX; photosynt 92.2 0.078 2.7E-06 53.4 3.6 26 135-160 66-91 (309)
481 2vhj_A Ntpase P4, P4; non- hyd 92.2 0.085 2.9E-06 54.4 3.8 29 131-159 118-146 (331)
482 2chg_A Replication factor C sm 92.1 0.078 2.7E-06 49.7 3.2 23 138-160 40-62 (226)
483 3gmt_A Adenylate kinase; ssgci 92.1 0.078 2.7E-06 52.0 3.2 22 138-159 10-31 (230)
484 3p32_A Probable GTPase RV1496/ 91.6 0.092 3.1E-06 54.7 3.3 26 135-160 78-103 (355)
485 1d2n_A N-ethylmaleimide-sensit 91.5 0.096 3.3E-06 51.9 3.2 25 135-159 63-87 (272)
486 1puj_A YLQF, conserved hypothe 91.4 0.11 3.8E-06 52.4 3.6 25 136-160 120-144 (282)
487 3th5_A RAS-related C3 botulinu 90.7 0.037 1.3E-06 52.1 0.0 21 138-158 32-52 (204)
488 3uk6_A RUVB-like 2; hexameric 91.3 0.1 3.6E-06 53.8 3.5 27 135-161 69-95 (368)
489 3r7w_A Gtpase1, GTP-binding pr 91.3 0.1 3.6E-06 53.1 3.3 23 137-159 4-26 (307)
490 1wxq_A GTP-binding protein; st 91.3 0.094 3.2E-06 55.7 3.1 22 139-160 3-24 (397)
491 3t15_A Ribulose bisphosphate c 91.3 0.11 3.7E-06 52.6 3.4 25 136-160 36-60 (293)
492 2hjg_A GTP-binding protein ENG 91.1 0.09 3.1E-06 56.3 2.8 22 138-159 5-26 (436)
493 1ofh_A ATP-dependent HSL prote 91.1 0.11 3.7E-06 52.1 3.2 25 136-160 50-74 (310)
494 3eie_A Vacuolar protein sortin 91.1 0.12 4.2E-06 52.8 3.7 26 135-160 50-75 (322)
495 3gj0_A GTP-binding nuclear pro 91.1 0.072 2.5E-06 50.8 1.8 22 138-159 17-39 (221)
496 2x2e_A Dynamin-1; nitration, h 91.1 0.067 2.3E-06 55.6 1.7 23 138-160 33-55 (353)
497 1g8f_A Sulfate adenylyltransfe 91.1 0.1 3.5E-06 57.2 3.2 28 134-161 393-420 (511)
498 3hws_A ATP-dependent CLP prote 91.0 0.11 3.7E-06 54.0 3.2 26 135-160 50-75 (363)
499 4hlc_A DTMP kinase, thymidylat 90.9 0.14 4.7E-06 49.2 3.6 26 136-161 2-27 (205)
500 3l0i_B RAS-related protein RAB 90.8 0.025 8.5E-07 53.1 -1.8 23 138-160 35-57 (199)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.5e-49 Score=420.03 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|..+. ....+|+|||+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 24 mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 24 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESE 99 (366)
T ss_dssp CEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHH
T ss_pred eEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 599999999996421 2356999999999999999999999999999999999999997 49999999986421
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHH
Q 007487 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (602)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv 256 (602)
++.+|||+|++.+++.+||+||+.++...... ...+.+++++++++.+||.+..++. +.+|||||||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~~~~~------~~~LSGGqkQRV 172 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDSY------PSNLSGGQKQRV 172 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGGTTCC------TTTSCHHHHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcCC------hhhCCHHHHHHH
Confidence 24699999999999999999999998765432 2234567899999999999887774 459999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhH
Q 007487 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
+|||||+.+|+||||||||+|||+.++..|+++|+++++ .|.|||+++|+. +++..+||||++|++|++++.|+++++
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999985 499999988876 688899999999999999999999987
Q ss_pred Hh
Q 007487 336 LQ 337 (602)
Q Consensus 336 ~~ 337 (602)
+.
T Consensus 252 ~~ 253 (366)
T 3tui_C 252 FS 253 (366)
T ss_dssp HS
T ss_pred Hh
Confidence 64
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.9e-49 Score=419.43 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~~ 181 (602)
.++++||++.|. ...+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 489999999993 457999999999999999999999999999999999999997 4999999998532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
+.+|||+|++.++|.+||+||+.|+...+.. ...+.+++++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~p------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hHCCHHHHHHHHHHHH
Confidence 5799999999999999999999998765432 22345678999999999998888755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
|+.+|+||||||||++||+..+.++.+.|+++.++ |.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999754 99999988876 68999999999999999999999999864
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.8e-49 Score=419.24 Aligned_cols=217 Identities=22% Similarity=0.331 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----C-C
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----E-M 179 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~----~-~ 179 (602)
.++++||+++|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. . .
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 489999999993 457999999999999999999999999999999999999997 49999999875 1 1
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHH
Q 007487 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (602)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~ 257 (602)
..+.+|||+|++.++|.+||+||+.|+...+... ..+.+++++++++.+||.+.+++.+. +|||||||||+
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~-~~~~~~~v~~~l~~~gL~~~~~r~~~------~LSGGq~QRVa 148 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGR-TAQERQRIEAMLELTGISELAGRYPH------ELSGGQQQRAA 148 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCC-SHHHHHHHHHHHHHHTCGGGTTSCGG------GSCHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHH
Confidence 1357999999999999999999999875433211 13456789999999999998888654 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
|||||+.+|++|||||||+|||+..+.++++.|+++. +.|.|+|+++|+. +++..+||||++|++|+++..|+++++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999999888875 5699999988876 6899999999999999999999999876
Q ss_pred h
Q 007487 337 Q 337 (602)
Q Consensus 337 ~ 337 (602)
.
T Consensus 228 ~ 228 (359)
T 3fvq_A 228 R 228 (359)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9e-49 Score=393.10 Aligned_cols=218 Identities=28% Similarity=0.308 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~----- 180 (602)
++++||++.|..+. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 68999999996321 1346999999999999999999999999999999999999997 49999999875421
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--CchhhHHHHHHHHHHHcCCchhh-hhhhcCCCCCCCCCHHHH
Q 007487 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGER 253 (602)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~l~L~~~~-~~~ig~~~~~~~LSGGqr 253 (602)
++.+|||+|++.+++.+||+||+.++...... ....+..+++.++++.++|.+.. ++.+ .+||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGq~ 151 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP------NQLSGGQQ 151 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG------GGSCHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh------hhCCHHHH
Confidence 12599999999999999999999987654321 11234456788999999998753 6644 59999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCc
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (602)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. + +..+||+|++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999865 99999988886 3 4589999999999999999988
Q ss_pred hhH
Q 007487 333 LAC 335 (602)
Q Consensus 333 ~~~ 335 (602)
+++
T Consensus 230 ~~~ 232 (235)
T 3tif_A 230 RGF 232 (235)
T ss_dssp C--
T ss_pred hhh
Confidence 764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-48 Score=401.14 Aligned_cols=218 Identities=23% Similarity=0.314 Sum_probs=189.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|.+ ...+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 5899999999942 245999999999999999999999999999999999999987 49999999986321
Q ss_pred ---CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHH
Q 007487 181 ---YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (602)
Q Consensus 181 ---~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv 256 (602)
++.+|||+|++. .+..+||+||+.++...... ...+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~------~LSgGqkQRv 152 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-PEDEIRKRVDNALKRTGIEHLKDKPTH------CLSFGQKKRV 152 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCcc------cCCHHHHHHH
Confidence 246999999862 34478999999998754321 223456779999999999988887654 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhH
Q 007487 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
+|||||+.+|++|||||||+|||+.++..++++|++++ ++|+|||+++|+. +++..+||+|++|++|++++.|+++++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999998 6699999999987 478889999999999999999999987
Q ss_pred Hh
Q 007487 336 LQ 337 (602)
Q Consensus 336 ~~ 337 (602)
..
T Consensus 232 ~~ 233 (275)
T 3gfo_A 232 FA 233 (275)
T ss_dssp TH
T ss_pred hc
Confidence 54
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.1e-49 Score=399.22 Aligned_cols=217 Identities=24% Similarity=0.244 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~------ 178 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++..
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 489999999993 356999999999999999999999999999999999999987 499999998763
Q ss_pred -----CC-------CceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCCchh-hhhhhcCCCC
Q 007487 179 -----MP-------YGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCY 244 (602)
Q Consensus 179 -----~~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~ig~~~~ 244 (602)
.. ++.++||+|++.+++.+||+||+.++. .... ....+.+++++++++.+||.+. .++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---- 152 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKHDARERALKYLAKVGIDERAQGKYPV---- 152 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTCCHHHHTSCGG----
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcC-CCHHHHHHHHHHHHHHcCCCchhhcCCcc----
Confidence 11 235999999999999999999999864 3221 1112345678999999999988 877554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 007487 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (602)
Q Consensus 245 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (602)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. +++..+||+|++|++|
T Consensus 153 --~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 153 --HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999987799999988876 5788899999999999
Q ss_pred eEEEEeCchhHHh
Q 007487 325 NTLFFGETLACLQ 337 (602)
Q Consensus 325 ~iv~~G~~~~~~~ 337 (602)
++++.|+++++..
T Consensus 230 ~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 230 KIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHHh
Confidence 9999999987653
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-48 Score=398.28 Aligned_cols=217 Identities=24% Similarity=0.305 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CC-
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MP- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~---~~- 180 (602)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 489999999993 346999999999999999999999999999999999999987 499999998763 11
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHH
Q 007487 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (602)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv 256 (602)
++.++||+|++.+++.+||+||+.++. .... ....+.+++++++++.++|.+..++.+. +|||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~LSgGqkQRv 168 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK-WPREKAEAKAMELLDKVGLKDKAHAYPD------SLSGGQAQRV 168 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSCGG------GSCHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchHhcCChh------hCCHHHHHHH
Confidence 235999999999999999999999864 3221 1112345678999999999988877554 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +++..+||++++|++|++++.|+++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987799999988875 5788899999999999999999998875
Q ss_pred h
Q 007487 337 Q 337 (602)
Q Consensus 337 ~ 337 (602)
.
T Consensus 248 ~ 248 (263)
T 2olj_A 248 D 248 (263)
T ss_dssp H
T ss_pred h
Confidence 3
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3e-48 Score=386.61 Aligned_cols=211 Identities=25% Similarity=0.274 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|. .+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999993 356999999999999999999999999999999999999987 49999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHH
Q 007487 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (602)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqR 255 (602)
.+.++|++|++.+++.+||+||+.++...... ...+.+++++++++.+||.+..++.++ +||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qr 148 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-PKKEAKERGEYLLSELGLGDKLSRKPY------ELSGGEQQR 148 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCCGG------GSCHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCChh------hCCHHHHHH
Confidence 14599999999999999999999987654321 112345678999999999988777554 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCc
Q 007487 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (602)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (602)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +.+ .+||++++|++|++++.|+.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999999999999987799999988885 455 89999999999999999863
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-48 Score=391.95 Aligned_cols=217 Identities=27% Similarity=0.315 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 15 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 589999999993 356999999999999999999999999999999999999987 49999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 007487 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (602)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~ 260 (602)
++.++|++|++.+++.+||+||+.+........ ..+.+++++++++.+||.+..++.++ +|||||||||+|||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~gL~~~~~~~~~------~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS-SSEIEEMVERATEIAGLGEKIKDRVS------TYSKGMVRKLLIAR 159 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCGGGGGSBGG------GCCHHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCCCchHhcCChh------hCCHHHHHHHHHHH
Confidence 246999999999999999999998875433211 12334678899999999988887654 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. +++..+||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999987899999988876 57888999999999999999999988754
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-48 Score=396.42 Aligned_cols=215 Identities=20% Similarity=0.237 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 589999999993 346999999999999999999999999999999999999987 49999999876321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHh-cCC-----------CchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCC
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-QLP-----------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~ 246 (602)
++.++||+|++.+++.+||+||+.++... ... ....+.+++++++++.+||.+..++.++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 152 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG------ 152 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch------
Confidence 23599999999999999999999876432 111 1112345678999999999988877654
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 007487 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (602)
Q Consensus 247 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (602)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. +++..+||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999987799999998887 477889999999999999
Q ss_pred EEEeCchh
Q 007487 327 LFFGETLA 334 (602)
Q Consensus 327 v~~G~~~~ 334 (602)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.7e-48 Score=407.27 Aligned_cols=219 Identities=25% Similarity=0.375 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~ 180 (602)
..++++||++.|+ +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChh
Confidence 4699999999883 2346999999999999999999999999999999999999987 4999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 007487 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (602)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~ 260 (602)
++.+|||+|+..++|.+||+||+.|+...+.. ...+.+++++++++.++|.+.+++.+. +|||||||||+|||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~~------~LSGGq~QRvalAr 158 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRV-PKDEMDARVRELLRFMRLESYANRFPH------ELSGGQQQRVALAR 158 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTSCGG------GSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCCcc------cCCHHHHHHHHHHH
Confidence 35799999999999999999999998755321 123446779999999999998887554 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|+++|+. +++..+||+|++|++|+++..|+++++..
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999754 99999988876 68889999999999999999999998754
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.1e-48 Score=409.47 Aligned_cols=217 Identities=24% Similarity=0.344 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~----- 179 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 489999999993 356999999999999999999999999999999999999987 4999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHH
Q 007487 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (602)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqR 255 (602)
..+.+|||+|+..++|++||+||+.|+...+... ..+.+++++++++.++|.+..++.+. +||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSGGq~QR 147 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVP-RQEIDQRVREVAELLGLTELLNRKPR------ELSGGQRQR 147 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHTCGGGTTCCGG------GSCHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchHhcCCcc------cCCHHHHHH
Confidence 1357999999999999999999999987553211 13445779999999999998887554 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
|+|||||+.+|++|||||||+|||+..+.++.+.|+++.+ .|.|+|+++|+. +++..+||+|++|++|+++..|++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 499999988886 58889999999999999999999998
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+..
T Consensus 227 l~~ 229 (372)
T 1g29_1 227 VYD 229 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-48 Score=388.44 Aligned_cols=215 Identities=22% Similarity=0.281 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 589999999993 356999999999999999999999999999999999999987 49999999886321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-CchhhhhhhcCCCCCCCCCHHHHHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~ig~~~~~~~LSGGqrqRv~ 257 (602)
++.++|++|++.+++.+||+||+.++...... ..+.+++++++++.++ |.+..++. +.+|||||||||+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LSgGq~qrv~ 149 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKD--KEGIKRDLEWIFSLFPRLKERLKQL------GGTLSGGEQQMLA 149 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC--SSHHHHHHHHHHHHCHHHHTTTTSB------SSSSCHHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCC--HHHHHHHHHHHHHHcccHhhHhcCC------hhhCCHHHHHHHH
Confidence 13499999999999999999999875321111 1234566888999995 87777664 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +++..+||++++|++|++++.|+++++.
T Consensus 150 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999999987899999988886 5788999999999999999999987764
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.7e-48 Score=408.56 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~~ 181 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 389999999983 356999999999999999999999999999999999999987 4999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
+.+|||+|+..++|++||+||+.|+...+... ..+.+++++++++.++|.+..++.++ +|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAP-REEIDKKVREVAKMLHIDKLLNRYPW------QLSGGQQQRVAIARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHTTCTTCTTCCGG------GSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchHhhCChh------hCCHHHHHHHHHHHH
Confidence 57999999999999999999999987543211 13445779999999999988887554 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
|+.+|++|||||||+|||+..+.++.+.|+++.+ .|.|+|+++|+. +++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999975 499999988876 58889999999999999999999998864
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-48 Score=408.56 Aligned_cols=217 Identities=23% Similarity=0.345 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~~ 181 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 389999999993 356999999999999999999999999999999999999987 4999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
+.+|||+|+..++|++||+||+.|+...+. ....+.+++++++++.++|.+..++.++ +|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSgGq~QRvalArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARR-ISKDEVEKRVVEIARKLLIDNLLDRKPT------QLSGGQQQRVALARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSC-SHHHHTTHHHHHHHHHTTCGGGTTSCGG------GSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHH
Confidence 579999999999999999999998653321 1112334678999999999998887554 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
|+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|+|+++|+. +++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999975 499999988886 57889999999999999999999998864
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.6e-48 Score=393.15 Aligned_cols=214 Identities=23% Similarity=0.287 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|. .+.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 11 ~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 11 LLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPKA 82 (266)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHHH
T ss_pred eEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHHH
Confidence 689999999993 4579999999999999999999999999999999999999975 9999999986432
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA 259 (602)
.+.++|++|++.+++.+||+||+.++.... . ..+.+++++++++.++|.+..++.++ +|||||||||+||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~--~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~QRv~iA 153 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPY-G--GSQDRQALQQVMAQTDCLALAQRDYR------VLSGGEQQRVQLA 153 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-C--STTHHHHHHHHHHHTTCSTTTTSBGG------GCCHHHHHHHHHH
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhc-C--cHHHHHHHHHHHHHcCChhHhcCCcc------cCCHHHHHHHHHH
Confidence 235899999999888999999998864332 1 12445678999999999988877554 9999999999999
Q ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCc
Q 007487 260 RELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (602)
Q Consensus 260 ~aL~~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (602)
|||+. +|++|||||||+|||+.++..++++|++++++ |+|||+++|+. +++..+||+|++|++|++++.|++
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTP 232 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999 99999999999999999999999999999865 57999987775 678899999999999999999999
Q ss_pred hhHH
Q 007487 333 LACL 336 (602)
Q Consensus 333 ~~~~ 336 (602)
+++.
T Consensus 233 ~~~~ 236 (266)
T 4g1u_C 233 EEVL 236 (266)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8874
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6e-48 Score=408.38 Aligned_cols=217 Identities=24% Similarity=0.333 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecccccccc--eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 007487 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~--- 179 (602)
.++++||++.|. .+. +|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 389999999993 346 999999999999999999999999999999999999987 4999999986421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHH
Q 007487 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (602)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrq 254 (602)
.++.+|||+|+..++|++||+||+.|+...+.. ...+.+++++++++.++|.+..++.++ +|||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~~~------~LSGGq~Q 147 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM-SKEEIRKRVEEVAKILDIHHVLNHFPR------ELSGAQQQ 147 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC-CHHHHHHHHHHHHHHTTCGGGTTSCGG------GSCHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhcCChh------hCCHHHHH
Confidence 235799999999999999999999987543211 113445779999999999998887554 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+ .|.|+|+++|+. +++..+||+|++|++|+++..|+++
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999975 499999988886 5788999999999999999999999
Q ss_pred hHHh
Q 007487 334 ACLQ 337 (602)
Q Consensus 334 ~~~~ 337 (602)
++..
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.6e-48 Score=408.78 Aligned_cols=217 Identities=25% Similarity=0.344 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~~ 181 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 389999999993 356999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
+.+|||+|+..++|++||+||+.|+...+.. ...+.+++++++++.++|.+.+++.+ .+|||||||||+||||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNRYP------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTSCT------TTCCSSCHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999886433211 11344567999999999999888755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
|+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|+++|+. +++..+||+|++|++|+++..|+++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999754 99999988886 57889999999999999999999998864
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.2e-47 Score=402.85 Aligned_cols=212 Identities=24% Similarity=0.320 Sum_probs=188.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---~~ 182 (602)
++++||++.|. .+ +|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.... ++
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 68999999983 34 999999999999999999999999999999999999987 49999999886421 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 007487 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (602)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL 262 (602)
.+|||+|+..++|++||+||+.|+...+... .. ++++++++.++|.+..++.++ +|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~~-~~v~~~l~~~~L~~~~~~~~~------~LSgGq~QRvalAraL 142 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---DP-KRVLDTARDLKIEHLLDRNPL------TLSGGEQQRVALARAL 142 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---CH-HHHHHHHHHTTCTTTTTSCGG------GSCHHHHHHHHHHHHT
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCC---HH-HHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHHH
Confidence 6999999999999999999999987543211 12 678999999999998887654 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
+.+|++|||||||+|||+..+.++.+.|+++.+ .|.|+|+++|+. +++..+||+|++|++|+++..|+++++..
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 599999988876 57889999999999999999999988753
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-47 Score=381.58 Aligned_cols=211 Identities=24% Similarity=0.330 Sum_probs=183.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~~~ 182 (602)
++++||++.|. . +|+|+|+++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y~-----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 57899999983 1 59999999999 999999999999999999999999987 4999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 007487 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (602)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL 262 (602)
.++|++|++.+++.+||+||+.++.... .. ...+++++++++.+||.+..++.++ +|||||||||+|||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqRv~lAral 141 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV--ER-VERDRRVREMAEKLGIAHLLDRKPA------RLSGGERQRVALARAL 141 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS--CH-HHHHHHHHHHHHTTTCTTTTTCCGG------GSCHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc--CC-chHHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHHHHH
Confidence 6999999999999999999998753221 11 1235678999999999988877554 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHh
Q 007487 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (602)
+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++|+. +++..+||++++|++|++++.|+++++..
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 499999988876 57889999999999999999999888753
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-46 Score=384.81 Aligned_cols=222 Identities=22% Similarity=0.328 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~--~~~ 182 (602)
.++++||++.|..+....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 37899999999411000146999999999999999999999999999999999999987 4999999987531 135
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCc--hhhhhhhcCCCCCCCCCHHHHHHHHHH
Q 007487 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA 259 (602)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~ig~~~~~~~LSGGqrqRv~IA 259 (602)
.++|++|++ .+++.+||+||+.++.....+. .+.+++++++++.+||. +..++.++ +|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~------~LSgGq~qRv~lA 150 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPLVKKAMEFVGLDFDSFKDRVPF------FLSGGEKRRVAIA 150 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT--SCSHHHHHHHHHHTTCCHHHHTTCCGG------GSCHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCH--HHHHHHHHHHHHHcCcCCcccccCChh------hCCHHHHHHHHHH
Confidence 699999995 5667799999998864321111 23346789999999998 88877554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHhh
Q 007487 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (602)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (602)
|||+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++ +.+..+||++++|++|++++.|+++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999987799999999887 467789999999999999999999887653
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.2e-46 Score=378.00 Aligned_cols=214 Identities=18% Similarity=0.244 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl--~~~~~~~~G~I~i~G~~~~~~-- 180 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999993 35699999999999999999999999999999999998 5665 59999999875321
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHh-c-CCCchhhHHHHHHHHHHHcCC-chhhhhhhcCCCCCCC-CCHHH
Q 007487 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL-Q-LPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG-LPCGE 252 (602)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~-~~~~~~~~~~~v~~~l~~l~L-~~~~~~~ig~~~~~~~-LSGGq 252 (602)
+..++|++|++.+++.+||+||+.++... . ......+..++++++++.+|| .+..++.++ + |||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq 148 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN------EGFSGGE 148 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT------CC----H
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc------cCCCHHH
Confidence 12489999999999999999999886532 1 111112334678899999999 577777554 7 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEEeC
Q 007487 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGE 331 (602)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~G~ 331 (602)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +.+..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999999977799999999987 467777 59999999999999998
Q ss_pred ch
Q 007487 332 TL 333 (602)
Q Consensus 332 ~~ 333 (602)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2e-46 Score=385.11 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~--~-~- 180 (602)
.++++||++.|. .+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. . .
T Consensus 21 ~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCH
Confidence 589999999993 346999999999999999999999999999999999999987 499999998753 1 1
Q ss_pred ---CceEEEEcCCCccC--CCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHH
Q 007487 181 ---YGSYGFVERETTLI--GSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (602)
Q Consensus 181 ---~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGq 252 (602)
++.++|++|++.++ +.+||+||+.++... .. .....+..++++++++.+||.+..++.++ +|||||
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGq 166 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG------YLSTGE 166 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh------hCCHHH
Confidence 24699999997643 356999999875211 00 00112335678899999999988877654 999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 007487 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (602)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (602)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|| |+++|+. +++..+||+|++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998779999 9988886 4778899999999999999999
Q ss_pred CchhHH
Q 007487 331 ETLACL 336 (602)
Q Consensus 331 ~~~~~~ 336 (602)
+++++.
T Consensus 246 ~~~~~~ 251 (279)
T 2ihy_A 246 AVEDIL 251 (279)
T ss_dssp EHHHHC
T ss_pred CHHHHh
Confidence 987764
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-45 Score=373.64 Aligned_cols=209 Identities=24% Similarity=0.321 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (602)
.++++||++.|.. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 4899999999931 357999999999999999999999999999999999999987 499983 2469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 185 GFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
+|++|++.+++.+||+||+.++...... ......+++++++++.+||.+..++.++ +|||||||||+||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT------SLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh------hCCHHHHHHHHHHHH
Confidence 9999999999999999999886422110 0112334678999999999988877554 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. +.+..+||++++|++|+ ++.|+++++.
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999876 99999988886 57888999999999999 9999987763
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.6e-45 Score=382.33 Aligned_cols=215 Identities=22% Similarity=0.338 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|++ .+.+|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 53 ~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHH
Confidence 5999999999952 356999999999999999999999999999999999999987 49999999986432
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqrq 254 (602)
++.++||+|++.+|+ .||+|||.++.. . ...++++++++.+++.+..+.++.| .....+|||||||
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQ 197 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRV----T---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ 197 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTST----T---CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHH
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhcc----c---CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHH
Confidence 246999999999985 599999976421 1 1234577888888988777665432 2345689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+++|+. +.+.. ||+|++|++|++++.|++++
T Consensus 198 RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999864 68999988876 45655 99999999999999999998
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+..
T Consensus 275 l~~ 277 (306)
T 3nh6_A 275 LLS 277 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.2e-45 Score=374.10 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~--~~~~~~~G~I~i~G~~~~~~-- 180 (602)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 489999999993 357999999999999999999999999999999999994 454 59999999875321
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHH-h----cCCC-chhhHHHHHHHHHHHcCCc-hhhhhhhcCCCCCCCCC
Q 007487 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-L----QLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (602)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~----~~~~-~~~~~~~~v~~~l~~l~L~-~~~~~~ig~~~~~~~LS 249 (602)
+..++|++|++.+++.+||.||+.+... . .... ...+.+++++++++.+||. +..++.++ .+||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 166 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFS 166 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-----TTCC
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 1248999999999999999999987542 1 1111 1123346788999999996 46666432 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 007487 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (602)
Q Consensus 250 GGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (602)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. ..+..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999977799999988886 466665 89999999999999
Q ss_pred EeCchhHH
Q 007487 329 FGETLACL 336 (602)
Q Consensus 329 ~G~~~~~~ 336 (602)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99988764
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.5e-45 Score=369.65 Aligned_cols=216 Identities=25% Similarity=0.361 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--- 180 (602)
..++++||++.|++ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 36899999999831 1356999999999999999999999999999999999999987 49999999886421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqr 253 (602)
++.++||+|++.+++ .||+||+.++. +. ...++++++++.+++.+..++.+.| +..+.+||||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTC----TT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 246999999998886 69999997641 11 1234577889999998887765421 234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|+++
T Consensus 152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 6999999999874 45 459999999999999999988
Q ss_pred hHH
Q 007487 334 ACL 336 (602)
Q Consensus 334 ~~~ 336 (602)
++.
T Consensus 229 ~l~ 231 (247)
T 2ff7_A 229 ELL 231 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.8e-45 Score=369.63 Aligned_cols=206 Identities=23% Similarity=0.308 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++. .+|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4789999864 489999999999999999999999999999999999987 3 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA 259 (602)
++.++|++|++.+++.+||+||+.++. .... . +++++++++.+||.+..++.++ +|||||||||+||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~--~-~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qrv~lA 138 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKT--R-TELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 138 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTT--C-HHHHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhh---ccCC--c-HHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHH
Confidence 246999999999999999999997642 1111 1 4668899999999988877554 9999999999999
Q ss_pred HHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCc
Q 007487 260 RELVMRPH-------VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (602)
Q Consensus 260 ~aL~~~P~-------iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (602)
|||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|+. +.+..+||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 9999999999999999999999999987799999988876 577889999999999999999998
Q ss_pred hhHH
Q 007487 333 LACL 336 (602)
Q Consensus 333 ~~~~ 336 (602)
+++.
T Consensus 218 ~~~~ 221 (249)
T 2qi9_C 218 EEVL 221 (249)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7763
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.9e-45 Score=375.07 Aligned_cols=218 Identities=22% Similarity=0.273 Sum_probs=176.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||++.|.+. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 58999999998421 1256999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ch-h--hHHHHHHHHHHHc--CCchhhhhhhcCCCCCCCCCHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FF-C--QRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~-~--~~~~~v~~~l~~l--~L~~~~~~~ig~~~~~~~LSGGqr 253 (602)
++.++||+|++.+++ .||+||+.++... ... .. . .....++++++.+ |+.+..++. +.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~------~~~LSgGq~ 162 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET------GNQLSGGQR 162 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG------GTTSCHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC------cCCCCHHHH
Confidence 246999999998887 5999999875311 111 00 0 0112245566666 565555554 459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCc
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (602)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||+++|+. +.+. .||+|++|++|++++.|++
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999964 589999988886 4554 5999999999999999998
Q ss_pred hhHHh
Q 007487 333 LACLQ 337 (602)
Q Consensus 333 ~~~~~ 337 (602)
+++..
T Consensus 241 ~~l~~ 245 (271)
T 2ixe_A 241 LQLME 245 (271)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-45 Score=368.70 Aligned_cols=215 Identities=20% Similarity=0.305 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~-----~ 180 (602)
++++||++.|. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999883 23569999999999999999999999999999999999999874 999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHHHH
Q 007487 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (602)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqrqR 255 (602)
++.++|++|++.+++ .||+||+.++.. +. ..+++++++++.+++.+..++.+.| +..+.+||||||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLE---GD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTT---SC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhcc---CC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 346999999998887 599999976321 11 1234578899999998877665321 13457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhH
Q 007487 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|+. +.+ ..||++++|++|++++.|+++++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 699999988886 455 46999999999999999988776
Q ss_pred Hh
Q 007487 336 LQ 337 (602)
Q Consensus 336 ~~ 337 (602)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-44 Score=365.14 Aligned_cols=209 Identities=22% Similarity=0.349 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCce
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (602)
++++||++.|.+.. ..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|++.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 68999999995310 11469999999999 9999999999999999999999999 87 499999998742 11456
Q ss_pred EE-EEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCc-hhhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 184 YG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
++ |++|++.+ .+||+||+.+..... . ..+++++++++.++|. +..++.++ +|||||||||+||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~~------~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK--G---LDRDLFLEMLKALKLGEEILRRKLY------KLSAGQSVLVRTSLA 142 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT--C---CCHHHHHHHHHHTTCCGGGGGSBGG------GSCHHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc--c---hHHHHHHHHHHHcCCChhHhcCChh------hCCHHHHHHHHHHHH
Confidence 99 99999887 889999998865432 1 2245688999999998 88877554 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC-EEEEEeCCeEEEEeCchhHHh
Q 007487 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 337 (602)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 337 (602)
|+.+|++|||||||+|||+.++..+++.|+++++ |||+++|+. +++..+|| ++++|++|++++.|+++++.+
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999999854 999988886 46788999 999999999999999988764
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-45 Score=360.87 Aligned_cols=203 Identities=22% Similarity=0.314 Sum_probs=173.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 007487 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (602)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~ 182 (602)
+..++++||++.|. . ++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 45799999999883 3 6999999999999999999999999999999999999987 4999999987532235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 007487 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (602)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL 262 (602)
.++|++|++.+++.+||+||+.++....... .+ +++++++++.+||.+. ++.+ .+|||||||||+|||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~--~~-~~~~~~~l~~~gl~~~-~~~~------~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVK--VN-KNEIMDALESVEVLDL-KKKL------GELSQGTIRRVQLASTL 148 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCC--CC-HHHHHHHHHHTTCCCT-TSBG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc--hH-HHHHHHHHHHcCCCcC-CCCh------hhCCHHHHHHHHHHHHH
Confidence 7999999999999999999998875432211 12 4668899999999877 7654 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 007487 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (602)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (602)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ++..+||+++++ +|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999877899999999874 678888888755 4554
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.7e-44 Score=362.91 Aligned_cols=216 Identities=24% Similarity=0.329 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~-~--- 180 (602)
.++++||++.|.++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|++++ +|+|.++|++... .
T Consensus 17 ~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHH
Confidence 58999999998421 124699999999999999999999999999999999999875 3999999987532 1
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqrq 254 (602)
++.++||+|++.+++ .||+||+.++. .. ..++++.++++.+++.+..+.+..+ +..+.+|||||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkq 162 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGK----LD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQ 162 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccC----CC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHH
Confidence 246999999999886 59999997642 11 1134567888888887765443211 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++ |+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 163 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999964 899999999874 44 4699999999999999999887
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+..
T Consensus 240 l~~ 242 (260)
T 2ghi_A 240 LLK 242 (260)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-43 Score=353.61 Aligned_cols=206 Identities=21% Similarity=0.284 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (602)
.++++||++.|.. +.+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998842 2357999999999999999999999999999999999999987 49999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHHHHHHHH
Q 007487 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIA 259 (602)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqrqRv~IA 259 (602)
+|++|++.+++. ||+||+.++.. .. ..+++++++.+++.+..++...+ +..+.+|||||||||+||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVS----YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSC----CC----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCC----cC----hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999999998885 99999976421 11 12345566777776655543211 123569999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
|||+.+|++|||||||+|||+.++..+++. ++++. +|+|||+++|+. +.+. .||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999997 45664 488999988886 4554 59999999999999999988765
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-44 Score=382.79 Aligned_cols=215 Identities=21% Similarity=0.297 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--- 180 (602)
..++++||++.|.. +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999952 24579999999999999999999999999999999999987 4 49999999875421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqr 253 (602)
++.++||+|++.+|+ +||+||+.+. . ...+++++++++.++|.+..++++.. .....+||||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~------~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPN------A--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTT------C--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhc------c--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 257999999999997 6999999531 1 12345688999999999988886541 011123999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
|||+|||||+.+|+||||||||||||+..+.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 578999988875 345679999999999999999999
Q ss_pred hHHh
Q 007487 334 ACLQ 337 (602)
Q Consensus 334 ~~~~ 337 (602)
++..
T Consensus 239 el~~ 242 (390)
T 3gd7_A 239 ELYH 242 (390)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9865
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.7e-43 Score=351.99 Aligned_cols=207 Identities=20% Similarity=0.253 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (602)
.++++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3899999999842 1357999999999999999999999999999999999999886 59999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhc-----CCCCCCCCCHHHHHHHHHH
Q 007487 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRRVRIA 259 (602)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig-----~~~~~~~LSGGqrqRv~IA 259 (602)
+|++|++.+ +.+||+||+.++.. .. .+ ..+++++.+++.+..+.... -+..+.+|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~--~~---~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQ--LE---EP---YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSC--CC---TT---HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccc--cC---HH---HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999865 57899999976421 11 11 23344555555432221100 0235679999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
|||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 5899999999874 44 579999999999999999988765
Q ss_pred h
Q 007487 337 Q 337 (602)
Q Consensus 337 ~ 337 (602)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 3
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1e-41 Score=384.40 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~----- 179 (602)
.++++||++.|+++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 341 ~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 341 EVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLTN 414 (582)
T ss_pred eEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHHH
Confidence 59999999999521 2569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHHH
Q 007487 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (602)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqrq 254 (602)
.++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..+++++|. +...+|||||||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~q 487 (582)
T 3b5x_A 415 LRRHFALVSQNVHLFND-TIANNIAYAAE---GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487 (582)
T ss_pred HhcCeEEEcCCCccccc-cHHHHHhccCC---CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHH
Confidence 13469999999999874 99999987421 11 22456889999999998887765432 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
|++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|++++
T Consensus 488 r~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999864 899999999874 44 4799999999999999999988
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+.+
T Consensus 565 l~~ 567 (582)
T 3b5x_A 565 LLA 567 (582)
T ss_pred HHh
Confidence 754
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8.5e-42 Score=384.96 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++|+++.|+++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 341 ~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 341 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred cEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHH
Confidence 59999999998421 256999999999999999999999999999999999999987 49999999986431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqrq 254 (602)
++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++++.|. +...+|||||||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~q 487 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYART---EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT---SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCC---CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHH
Confidence 2469999999999875 99999987421 11 12456889999999988877765332 245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
|++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|++++
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999975 899999999874 44 5799999999999999999988
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+.+
T Consensus 565 l~~ 567 (582)
T 3b60_A 565 LLA 567 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-41 Score=384.91 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=182.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~----- 180 (602)
++++||++.|+++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 342 i~~~~v~~~y~~~--~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 342 LEFKNVHFAYPAR--PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEEEECSSC--TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHH
Confidence 9999999999531 1246999999999999999999999999999999999999987 49999999986431
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHHHH
Q 007487 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRR 255 (602)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqrqR 255 (602)
++.++||+|++.+++ .||+||+.++.. ......+++++++++.+++.+..++++.|. +.+.+||||||||
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGAD----DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSS----STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCC----CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 246999999999987 599999987421 100123466889999999988776654322 2347899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhH
Q 007487 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
|+|||||+.+|++|||||||++||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC-
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999976 899999888864 55 46999999999999999998876
Q ss_pred Hh
Q 007487 336 LQ 337 (602)
Q Consensus 336 ~~ 337 (602)
.+
T Consensus 569 ~~ 570 (595)
T 2yl4_A 569 LS 570 (595)
T ss_dssp --
T ss_pred Hh
Confidence 53
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1e-41 Score=384.01 Aligned_cols=217 Identities=22% Similarity=0.305 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--- 180 (602)
..++++|++++|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 36999999999853 2357999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqr 253 (602)
++.++||+|++.+++. ||+||+.++. +. ..++++.++++..++.+..++++.|. +...+||||||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLGR----PT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGC----SS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 2469999999999976 9999997641 11 22355778889999887776665332 33468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
||++|||||+.+|++|||||||||||+.++..+.+.|+++. +++|+|+++|++. .+ ..||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 4789999888875 44 569999999999999999999
Q ss_pred hHHh
Q 007487 334 ACLQ 337 (602)
Q Consensus 334 ~~~~ 337 (602)
++.+
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-41 Score=384.26 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--- 180 (602)
..++++|+++.|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 36999999999953 2457999999999999999999999999999999999999987 49999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcC-----CCCCCCCCHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~-----~~~~~~LSGGqr 253 (602)
++.++||+|++.+++. ||+||+.++. +. ..++++.++++..++.+..+.++.| ++.+.+||||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGR----ED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTC----SS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccC----CC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 3569999999999965 9999996531 11 1234566778888887766554432 245678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
||++|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+ ..||+|++|++|++++.|+++
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 5899999999874 44 589999999999999999999
Q ss_pred hHHh
Q 007487 334 ACLQ 337 (602)
Q Consensus 334 ~~~~ 337 (602)
|+.+
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-42 Score=386.00 Aligned_cols=215 Identities=23% Similarity=0.358 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++|+++.|++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 354 ~i~~~~v~~~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 354 EIEFKNVWFSYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp CEEEEEEECCSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHH
T ss_pred eEEEEEEEEECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHH
Confidence 5999999999842 356999999999999999999999999999999999999997 49999999986432
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCC-----CCCCCHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~-----~~~LSGGqrq 254 (602)
++.++||+|++.+++ .||+||+.++. +. ..++++.++++.+++.+..++++.|.+. ..+|||||||
T Consensus 427 ~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Q 498 (598)
T 3qf4_B 427 LRSSIGIVLQDTILFS-TTVKENLKYGN----PG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498 (598)
T ss_dssp HHHHEEEECTTCCCCS-SBHHHHHHSSS----TT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHH
T ss_pred HHhceEEEeCCCcccc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 246999999999986 59999997641 11 1224467788888888777776543322 3589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
|++|||||+.+|++||||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+ ..||+|++|++|++++.|++++
T Consensus 499 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999986 5899999999985 45 4599999999999999999998
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+.+
T Consensus 576 l~~ 578 (598)
T 3qf4_B 576 LIQ 578 (598)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.1e-41 Score=345.46 Aligned_cols=201 Identities=21% Similarity=0.305 Sum_probs=157.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (602)
.++++||++.. +.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 40 ~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp ----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 58999998742 46999999999999999999999999999999999999986 59999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 007487 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (602)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqrqRv~IA 259 (602)
+|++|++.+++. ||+||+. +. .. . ...+.++++.+++.+..++...+. ..+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~~--~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--SY--D----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--CC--C----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--cc--c----hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999988875 9999996 21 11 1 123455677778876655443111 23468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
|||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||+++|+. ..+ ..||++++|++|++++.|+++++.
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999999999974 5554 589999988886 455 469999999999999999998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3e-40 Score=402.01 Aligned_cols=219 Identities=23% Similarity=0.349 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++||+++|+.+ ...++|+|+|++|+|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...
T Consensus 1076 ~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp CEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHHH
T ss_pred eEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHHH
Confidence 69999999999642 34579999999999999999999999999999999999999975 9999999986532
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCC-----CCCCCHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~-----~~~LSGGqrq 254 (602)
+++++||+|++.+|.. |++|||.|+. +. .+..++++.++++..++.+....+++|.+. ...|||||||
T Consensus 1151 lR~~i~~V~Qdp~LF~g-TIreNI~~gl----d~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1151 TRSQIAIVSQEPTLFDC-SIAENIIYGL----DP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HHTTEEEECSSCCCCSE-EHHHHHSSSS----CT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HHhheEEECCCCEeeCc-cHHHHHhccC----CC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 3579999999999964 9999996542 11 122356789999999998887777665443 3569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
|++|||||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|..+ . ...||+|+||++|+|++.|++++
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs-T-i~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN-T-VMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS-T-TTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH-H-HHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998875 5899999999875 3 45699999999999999999999
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+++
T Consensus 1302 Ll~ 1304 (1321)
T 4f4c_A 1302 LMS 1304 (1321)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.7e-39 Score=391.52 Aligned_cols=217 Identities=21% Similarity=0.274 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---- 180 (602)
.++++|+++.|++. ..+++|+|+|+++++||.+||+||||||||||+++|.|+++|. +|+|.+||.+++..
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~ 489 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEF 489 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHH
Confidence 59999999999642 3467999999999999999999999999999999999999997 49999999986542
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCC-----CCCCCHHHHH
Q 007487 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (602)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~-----~~~LSGGqrq 254 (602)
++.++||+|++.+|. .||+|||.|+. + ...++++.++++..++.+..+.++.|++. ...|||||||
T Consensus 490 lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~----~---~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFN-CTIEENISLGK----E---GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp HHHHEEEECSSCCCCS-EEHHHHHHTTC----T---TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred HhhcccccCCcceeeC-CchhHHHhhhc----c---cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 347999999999985 59999998752 1 12346788999999998888877766543 3569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchh
Q 007487 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (602)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (602)
|++|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.+ ....||+|++|++|+|++.|+.+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHH
Confidence 9999999999999999999999999999999999999986 4889999999985 457899999999999999999999
Q ss_pred HHh
Q 007487 335 CLQ 337 (602)
Q Consensus 335 ~~~ 337 (602)
+.+
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
Confidence 864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.2e-38 Score=383.25 Aligned_cols=218 Identities=22% Similarity=0.289 Sum_probs=182.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--- 180 (602)
..++++|+++.|+++ ...++|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 359999999999632 2346999999999999999999999999999999999999987 49999999985422
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqr 253 (602)
++.++||+|++.+++. ||+||+.++. +. ..++++.++++..++.+..++++.|. +...+||||||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGR----ED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHC----SS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 2469999999999975 9999998862 11 12345777778888776665554332 34568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
|||+|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+. +.+. .||+|++|++|++++.|+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i~-~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STVR-NADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHHT-TCSEEEECSSSCCCCEECHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 589999988886 4554 59999999999999999999
Q ss_pred hHHh
Q 007487 334 ACLQ 337 (602)
Q Consensus 334 ~~~~ 337 (602)
++.+
T Consensus 610 ~l~~ 613 (1284)
T 3g5u_A 610 ELMR 613 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-38 Score=382.39 Aligned_cols=220 Identities=22% Similarity=0.297 Sum_probs=182.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--- 180 (602)
..++++||++.|+++ ...++|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 359999999999632 2346999999999999999999999999999999999999987 49999999876431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCC-----CCCCCCCHHHH
Q 007487 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (602)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~-----~~~~~LSGGqr 253 (602)
++.++||+|++.+++ .||+||+.++. +.. ...++.+.++++..++.+..++++.|. +....||||||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~----~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGD----NSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCC----SSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccC----CCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 356999999998874 69999996532 110 112345677788888877766655332 23467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCch
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (602)
|||+|||||+.+|+||||||||+|||+.++..|.+.|+++. +|+|+|+++|+.. .+ ..||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 5899999899875 55 559999999999999999999
Q ss_pred hHHh
Q 007487 334 ACLQ 337 (602)
Q Consensus 334 ~~~~ 337 (602)
++.+
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-37 Score=344.69 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=176.0
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 007487 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (602)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~ 182 (602)
...++++|+++.|. ...|+++|+++++||++||+||||||||||+|+|+|+++|++ |+|.++ .
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCCC--------C
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC--------c
Confidence 34689999998873 246899999999999999999999999999999999999874 988761 3
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 007487 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (602)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL 262 (602)
.++|++|+....+.+||.|++........ ...++++++++.+++.+..++.++ .|||||||||+|||+|
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVN------ELSGGELQRVAIAATL 416 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBGG------GCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCChh------hCCHHHHHHHHHHHHH
Confidence 59999999887788999998865311110 123567889999999877777554 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeCchhHHh
Q 007487 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (602)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (602)
+.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. +++..+||||++|++ |+++..|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999999997 4699999988875 688899999999986 88999999988765
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.7e-37 Score=347.17 Aligned_cols=205 Identities=19% Similarity=0.192 Sum_probs=176.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~ 183 (602)
..++++|+++.|. ...|+++|+++++||++||+||||||||||||+|+|+++|++ |+|.++ ..
T Consensus 356 ~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~--------~~ 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWD--------LT 418 (607)
T ss_dssp EEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCCC--------CC
T ss_pred eEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEe--------eE
Confidence 4689999998873 246899999999999999999999999999999999999874 988762 35
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 007487 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (602)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~ 263 (602)
++|++|+..+.+.+||.|++....... ....++++++++.+++.+..++.++ +|||||||||+|||||+
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDSSK-----LNSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATLL 487 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHHH-----HHCHHHHHHTHHHHTCTTTTTSBGG------GCCHHHHHHHHHHHHHT
T ss_pred EEEEecCccCCCCCcHHHHHHhhhccC-----CCHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHHHH
Confidence 999999988878899999886531110 0123567889999999888877654 99999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeCchhHHh
Q 007487 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (602)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (602)
.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+++++..
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999997 4689999988875 688899999999986 88899999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.7e-37 Score=339.85 Aligned_cols=206 Identities=17% Similarity=0.248 Sum_probs=172.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 007487 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (602)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~ 182 (602)
...++++|+++.|. ...|+++|+++++||++||+||||||||||+|+|+|+++|++ |+|.++| .
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSC-------C
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC-------e
Confidence 34689999998873 246888899999999999999999999999999999999974 9999765 3
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 007487 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (602)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL 262 (602)
.++|++|+....+.+||.||+.+... .. .......++++++.++|.+..++.++ +|||||||||+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~---~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASK-DA---LSTSSWFFEEVTKRLNLHRLLESNVN------DLSGGELQKLYIAATL 400 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCS-ST---TCTTSHHHHHTTTTTTGGGCTTSBGG------GCCHHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhh-hc---cchhHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHHHHH
Confidence 58999999777678999999976321 11 01123457889999999888777554 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeCchhH
Q 007487 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLAC 335 (602)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~ 335 (602)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. +++..+||||++|++ |.....+++.++
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999999999999985 589999987775 688899999999986 566666776554
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=334.18 Aligned_cols=203 Identities=18% Similarity=0.230 Sum_probs=167.0
Q ss_pred EeEEEEEecccccccceeeceeeEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 007487 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (602)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~ 183 (602)
+++++.|+. ...+++|+|+++.+| |+++|+||||||||||+|+|+|+++|++ |+. .....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~--------~~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD--------IPKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC--------CCSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC--------ccCCc
Confidence 445556642 235788999999888 7899999999999999999999999974 752 12346
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 007487 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (602)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~ 263 (602)
++|++|+.......||+|++... .+. . ......++++++.++|.+.+++.+ .+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~--~~~--~-~~~~~~~~~~l~~l~l~~~~~~~~------~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKK--IRG--Q-FLNPQFQTDVVKPLRIDDIIDQEV------QHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHH--CSS--T-TTSHHHHHHTHHHHTSTTTSSSBS------SSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHH--hhc--c-cccHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHHHH
Confidence 89999997766678999987532 111 1 112345788999999998877754 599999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeCchhHHhh
Q 007487 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 338 (602)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 338 (602)
.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. +++..+||||++|++ |+++..|+|+++...
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999996 5699999988775 688899999999986 999999999988653
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.3e-35 Score=336.46 Aligned_cols=208 Identities=19% Similarity=0.227 Sum_probs=139.8
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAK 176 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL---------------------~~L~Gl~~~~~~----~~G~I~i~G~~ 176 (602)
...+|+|||++|++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 888888877621 13667777754
Q ss_pred CCC-CCceEEEEcCCCc-------------------cCCCCCHHHHHHHHHHhcCCCchh-hHH------HHHHHHHHHc
Q 007487 177 SEM-PYGSYGFVERETT-------------------LIGSLTVREYLYYSALLQLPGFFC-QRK------NVVEDAIHAM 229 (602)
Q Consensus 177 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~-~~~------~~v~~~l~~l 229 (602)
... ....+++++|... .++.+||+||+.+...+....... ... ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 321 2233455554332 346789999997743222111000 000 1112458888
Q ss_pred CCchh-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 007487 230 SLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (602)
Q Consensus 230 ~L~~~-~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (602)
||.+. .++.++ +|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+++|+
T Consensus 190 gL~~~~~~~~~~------~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 190 GLDYLTLSRSAG------TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TCTTCCTTCBGG------GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCchhhhcCCcc------cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 98764 566554 999999999999999999998 999999999999999999999999999889999998888
Q ss_pred ChHHHHhcCCEEEEE------eCCeEEEEeCchhHHh
Q 007487 307 SSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (602)
Q Consensus 307 ~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (602)
. ..+ ..||+|++| ++|++++.|+++++..
T Consensus 264 ~-~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 264 E-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp H-HHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred H-HHH-hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 6 444 569999999 8999999999988753
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.1e-34 Score=333.43 Aligned_cols=200 Identities=21% Similarity=0.304 Sum_probs=166.5
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 007487 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (602)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~ 182 (602)
+..+...|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 34677789999883 3579999999999999999999999999999999995 222 3433211 12
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCc-hhhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 007487 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (602)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ig~~~~~~~LSGGqrqRv~IA~ 260 (602)
+++|++|+. .+++.+||.|++.+ .... . +++++++++.+||. +..++.++ +|||||||||+|||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~----~~~~---~-~~~v~~~L~~lgL~~~~~~~~~~------~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE----SGVG---T-KEAIKDKLIEFGFTDEMIAMPIS------ALSGGWKMKLALAR 561 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT----TCSS---C-HHHHHHHHHHTTCCHHHHHSBGG------GCCHHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH----hhcC---H-HHHHHHHHHHcCCChhhhcCCcc------cCCHHHHHHHHHHH
Confidence 478999874 67889999999965 1111 1 46688999999994 67777665 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeCchhHHh
Q 007487 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (602)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (602)
+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||+++|+. ..+.++||+|++|++|+++ +.|+++++..
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999999988 589999988775 6888999999999999997 6899887653
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-35 Score=330.13 Aligned_cols=194 Identities=23% Similarity=0.213 Sum_probs=156.3
Q ss_pred EEE-EeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 007487 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (602)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I---------~i~G~ 175 (602)
.++ +||++.|.+ ...+|+|+| .+++||++||+||||||||||+|+|+|+++|++ |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 355 589998832 124899999 999999999999999999999999999998875 775 35664
Q ss_pred eCC-------CCCceEEEEcCCCccCCC---CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCC
Q 007487 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (602)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~ 245 (602)
+.. .....+++++|+...++. .|+.|++... +..++++++++.+||.+..++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----------~~~~~~~~~l~~lgl~~~~~~~~~----- 157 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------DETGKLEEVVKALELENVLEREIQ----- 157 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------CSSSCHHHHHHHTTCTTTTTSBGG-----
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------hHHHHHHHHHHHcCCChhhhCChh-----
Confidence 321 112357889887544332 3899987431 112347889999999887777554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 007487 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (602)
Q Consensus 246 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (602)
+|||||||||+|||||+.+|+||||||||++||+.++..+++.|++++++|.|||+++|+. .++..+||+|++|++|
T Consensus 158 -~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 158 -HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999988899999988875 6888999999999865
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.8e-35 Score=333.33 Aligned_cols=191 Identities=23% Similarity=0.248 Sum_probs=156.1
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 007487 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (602)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I---------~i~G~~~~~ 179 (602)
+||++.|.+ ...+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.+...
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 788888731 124899999 999999999999999999999999999999875 775 355643210
Q ss_pred -------CCceEEEEcCCCccCC---CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCC
Q 007487 180 -------PYGSYGFVERETTLIG---SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (602)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LS 249 (602)
....+++++|.....+ ..||.|++.. . +..++++++++.+||.+..++.++ +||
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~------~~~~~~~~~L~~lgL~~~~~~~~~------~LS 230 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V------DEVGKFEEVVKELELENVLDRELH------QLS 230 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T------CCSSCHHHHHHHTTCTTGGGSBGG------GCC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h------HHHHHHHHHHHHcCCCchhCCChh------hCC
Confidence 1234788888743322 2399999853 1 112347889999999988888665 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 007487 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (602)
Q Consensus 250 GGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (602)
|||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||+|++|+++
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999987899999988875 5788899999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.5e-34 Score=333.08 Aligned_cols=206 Identities=21% Similarity=0.306 Sum_probs=161.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~ 183 (602)
..++++|+++.|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46899999998842 1256999999999999999999999999999999999999987 499999863 24
Q ss_pred EEEEcCCCcc----CCCCCHHHHHHHHHHhc------------C------------------------------------
Q 007487 184 YGFVERETTL----IGSLTVREYLYYSALLQ------------L------------------------------------ 211 (602)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~E~l~~~~~~~------------~------------------------------------ 211 (602)
++|++|+... ....|+.|++.+..... .
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8888887521 12457777765421000 0
Q ss_pred ----------------------------CC------------------------chhhHHHHHHHHHHHcCCch-h-hhh
Q 007487 212 ----------------------------PG------------------------FFCQRKNVVEDAIHAMSLSD-Y-ANK 237 (602)
Q Consensus 212 ----------------------------~~------------------------~~~~~~~~v~~~l~~l~L~~-~-~~~ 237 (602)
+. .....+++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 00 00011356788999999975 3 465
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 007487 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (602)
Q Consensus 238 ~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (602)
.++ +|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.|+++ |.|||+++|+. +.+..+||+
T Consensus 898 ~~~------~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~Dr 967 (986)
T 2iw3_A 898 RIR------GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEE 967 (986)
T ss_dssp CGG------GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCE
T ss_pred Ccc------ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCE
Confidence 444 99999999999999999999999999999999999999999988765 56999987775 678899999
Q ss_pred EEEEeCCeEEEEeC
Q 007487 318 ICLLSNGNTLFFGE 331 (602)
Q Consensus 318 v~vL~~G~iv~~G~ 331 (602)
+++|++|+++..|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.3e-33 Score=318.91 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=147.6
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMP 180 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~----------------------Gl~~~~~~~~G~I~i~G~~~~~~ 180 (602)
..+|+|||++|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35799999999999999999999999999998764 22222 36777777653210
Q ss_pred C----------------------------------------------ceEEEEcCCCccCC-------------------
Q 007487 181 Y----------------------------------------------GSYGFVERETTLIG------------------- 195 (602)
Q Consensus 181 ~----------------------------------------------~~~~yv~Q~~~l~~------------------- 195 (602)
. ...|++.|+..++|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 0 01233333332222
Q ss_pred -------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCch-hhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 196 -------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 196 -------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
.+||.||+.+... . ...+++.+.++.+++.. ..++ ++.+|||||||||+||||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFAS-----I--PKIKRKLETLYDVGLGYMKLGQ------PATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTT-----C--HHHHHHHHHHHHTTCTTSBTTC------CGGGCCHHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHH-----h--hhHHHHHHHHHHcCCchhhccC------CchhCCHHHHHHHHHHHH
Confidence 4789999876321 1 12345667888899864 3444 445999999999999999
Q ss_pred HhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCc
Q 007487 262 LVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGET 332 (602)
Q Consensus 262 L~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~ 332 (602)
|+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. ..+ ..||+|++| ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99987 59999999999999999999999999998899999988886 344 679999999 89999999999
Q ss_pred hhHHh
Q 007487 333 LACLQ 337 (602)
Q Consensus 333 ~~~~~ 337 (602)
+++.+
T Consensus 636 ~~~~~ 640 (670)
T 3ux8_A 636 EEVAE 640 (670)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98753
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-32 Score=308.00 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=142.7
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCceEE
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (602)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677776 589999999999999999999999999999975 8772 33321100 000112
Q ss_pred EEcCCCcc------CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHH
Q 007487 186 FVERETTL------IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (602)
Q Consensus 186 yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA 259 (602)
+.+|.... -+..++.+++... . ....++++++++.+||.+..++.++ +|||||||||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~----~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGe~Qrv~iA 233 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M----EKSPEDVKRYIKILQLENVLKRDIE------KLSGGELQRFAIG 233 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C----CSCHHHHHHHHHHHTCTGGGGSCTT------TCCHHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h----hhHHHHHHHHHHHcCCcchhCCChH------HCCHHHHHHHHHH
Confidence 33332111 1123566555321 1 1223568899999999988887654 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 007487 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (602)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (602)
|||+.+|+||||||||+|||+.++..+.++|++++++|.|||+++|+. +++..+||+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999998899999987765 68899999999999876544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.9e-32 Score=303.40 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=137.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCceEEEEcCC----C
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (602)
++||++||+||||||||||+|+|+|+++|+. |+| .++|++.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 4899999999999999999999999999975 888 56665431 011123444443 2
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 007487 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (602)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 271 (602)
.++ ..||.|++... +.+++++++++.+++.+..++.++ +|||||||||+|||||+.+|+||||
T Consensus 100 ~~~-~~~v~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 100 KFL-KGTVNEILTKI----------DERGKKDEVKELLNMTNLWNKDAN------ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTC-CSBHHHHHHHH----------CCSSCHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhc-cCcHHHHhhcc----------hhHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 233 34888876321 112346789999999988887665 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 007487 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (602)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (602)
||||++||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999976 89999987776 6889999999999876543
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=3.3e-30 Score=298.49 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=157.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~-Gl~---------~~~~--~~~G--- 168 (602)
..++++|++. ..|+|||++|++||++||+|+||||||||+++|+ |.+ .++. .+.|
T Consensus 628 ~~L~v~~l~~----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGARE----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEECS----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCcc----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 4688888741 3699999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-C-----------------------CceEEEEcCCCccC----------------------C----
Q 007487 169 ---EVFVNGAKSEM-P-----------------------YGSYGFVERETTLI----------------------G---- 195 (602)
Q Consensus 169 ---~I~i~G~~~~~-~-----------------------~~~~~yv~Q~~~l~----------------------~---- 195 (602)
.|.++|.++.. . .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888766421 0 01246666643221 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCch-hhhhhhcCCCCCC
Q 007487 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (602)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ig~~~~~~ 246 (602)
.+||.|++.|.. .. ....++.++++.+||.. ..++.+ .
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-----~~--~~~~~~~~~L~~~gL~~~~l~~~~------~ 844 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-----SI--PKIKRKLETLYDVGLGYMKLGQPA------T 844 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-----SC--HHHHHHHHHHHHTTCSSSBTTCCG------G
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-----cc--hhHHHHHHHHHHcCCCcccccCch------h
Confidence 357777776521 11 11234578999999976 555544 4
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE--
Q 007487 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (602)
Q Consensus 247 ~LSGGqrqRv~IA~aL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (602)
.|||||||||+||++|+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. +.+ ..||+|++|
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECS
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999999875 99999999999999999999999999998899999988875 454 689999999
Q ss_pred ----eCCeEEEEeCchhHHh
Q 007487 322 ----SNGNTLFFGETLACLQ 337 (602)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (602)
++|++++.|+++++..
T Consensus 923 ~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SSTTSCCSEEEEESHHHHHT
T ss_pred CCCCCCCEEEEecCHHHHHh
Confidence 7899999999988754
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=3.2e-30 Score=298.08 Aligned_cols=214 Identities=21% Similarity=0.209 Sum_probs=155.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CCC------------
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PHS------------ 163 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~-L~Gl~-------~~~------------ 163 (602)
..++++|+++ ..|+|||+.|++||++||+|+||||||||+++ |+|++ ++.
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4689999864 26999999999999999999999999999996 77553 120
Q ss_pred ---CCcee-------EEEECCEeCCCCCc----------------------------------------------eEEEE
Q 007487 164 ---ARMYG-------EVFVNGAKSEMPYG----------------------------------------------SYGFV 187 (602)
Q Consensus 164 ---~~~~G-------~I~i~G~~~~~~~~----------------------------------------------~~~yv 187 (602)
....| .|.++|.+.....+ ..|++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01356 78898875421100 01122
Q ss_pred cCCCccCC------------------------CCCHHHHHHHHHH--hc-CCCchhhHHHHHHHHHHHcCCchh-hhhhh
Q 007487 188 ERETTLIG------------------------SLTVREYLYYSAL--LQ-LPGFFCQRKNVVEDAIHAMSLSDY-ANKLI 239 (602)
Q Consensus 188 ~Q~~~l~~------------------------~lTV~E~l~~~~~--~~-~~~~~~~~~~~v~~~l~~l~L~~~-~~~~i 239 (602)
..+..+++ ..++.|++.+... +. ... ....+++.++++.+||... .++.
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~~~~~~~~~~L~~~gL~~~~l~~~- 727 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD--ESAIFRALDTLREVGLGYLRLGQP- 727 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--SHHHHHHHHHHHHTTCTTSBTTCC-
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--chHHHHHHHHHHHcCCCcccccCC-
Confidence 11112222 2344444321100 00 011 1223467899999999763 4543
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 007487 240 GGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (602)
Q Consensus 240 g~~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (602)
+..|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+++|+. +++ ..||
T Consensus 728 -----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~aD 800 (842)
T 2vf7_A 728 -----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AASD 800 (842)
T ss_dssp -----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCS
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCC
Confidence 459999999999999999996 799999999999999999999999999998899999988875 566 7899
Q ss_pred EEEEE------eCCeEEEEeCchhHHh
Q 007487 317 RICLL------SNGNTLFFGETLACLQ 337 (602)
Q Consensus 317 ~v~vL------~~G~iv~~G~~~~~~~ 337 (602)
+|++| ++|++++.|+++++..
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 99999 7999999999988753
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.7e-29 Score=294.30 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=150.7
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCCCC---ce------eEEEECCEeCCC------
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSAR---MY------GEVFVNGAKSEM------ 179 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL---------~~L~Gl~~~~~~---~~------G~I~i~G~~~~~------ 179 (602)
..|+|||+++++|++++|+|+||||||||+ +.+.|...+.+. .. +.|.+++.+...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 455554332210 12 234444332110
Q ss_pred ----------------------------------------CCceEEEEcCCCccCC------------------------
Q 007487 180 ----------------------------------------PYGSYGFVERETTLIG------------------------ 195 (602)
Q Consensus 180 ----------------------------------------~~~~~~yv~Q~~~l~~------------------------ 195 (602)
..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012467777666555
Q ss_pred --------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchh-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 007487 196 --------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (602)
Q Consensus 196 --------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P 266 (602)
.+||.|++.|... .....++.++|+.+||... .++ .+.+|||||||||+|||||+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~-------~~~~~~~~~~L~~vGL~~~~lgq------~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN-------IPSIKRTLQVLHDVGLGYVKLGQ------PATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT-------CHHHHHHHHHHHHTTGGGSBTTC------CSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc-------chhHHHHHHHHHHcCCchhhccC------CccCCCHHHHHHHHHHHHHhhCC
Confidence 3678888766321 1223457789999999643 233 45699999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCchhHHh
Q 007487 267 ---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (602)
Q Consensus 267 ---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (602)
+||||||||+|||+.+...+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 79999999999999999999999999998899999988876 455 569999999 8999999999999864
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=4.1e-29 Score=290.37 Aligned_cols=209 Identities=20% Similarity=0.208 Sum_probs=153.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHH-c----CCC-----CCC--Ccee---
Q 007487 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-G----RLP-----HSA--RMYG--- 168 (602)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~-G----l~~-----~~~--~~~G--- 168 (602)
..++++|++. ..|+|||+.|++||++||+|+||||||||+++|+ | .+. ++. ...|
T Consensus 646 ~~L~v~~l~~----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGARE----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEECS----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCcc----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 4688888741 3699999999999999999999999999999853 2 221 111 0112
Q ss_pred ---EEEECCEeCCC-C-----------------------CceEEEEcCCCccC----------------------C----
Q 007487 169 ---EVFVNGAKSEM-P-----------------------YGSYGFVERETTLI----------------------G---- 195 (602)
Q Consensus 169 ---~I~i~G~~~~~-~-----------------------~~~~~yv~Q~~~l~----------------------~---- 195 (602)
.|.+++.++.. . .+..||++|...+. +
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 24555544310 0 01235555532221 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCch-hhhhhhcCCCCCC
Q 007487 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (602)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ig~~~~~~ 246 (602)
.+||.|++.|... . ....++.++++.+||.. ..++. +.
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-----~--~~~~~~~~~L~~lgL~~~~l~~~------~~ 862 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-----I--AGVHRYLRTLVDVGLGYVRLGQP------AP 862 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-----C--HHHHHHHHHHHHTTGGGSBTTCC------GG
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-----c--hHHHHHHHHHHHcCCCcccccCc------cc
Confidence 2566777654211 1 11234578999999976 45554 44
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE--
Q 007487 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (602)
Q Consensus 247 ~LSGGqrqRv~IA~aL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (602)
.|||||||||+||++|+.+| +||||||||+|||+.+...++++|++++++|.|||+++|+. +.+ ..||+|++|
T Consensus 863 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 940 (993)
T 2ygr_A 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLGP 940 (993)
T ss_dssp GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEES
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECC
Confidence 99999999999999999875 99999999999999999999999999998899999988875 455 689999999
Q ss_pred ----eCCeEEEEeCchhHHh
Q 007487 322 ----SNGNTLFFGETLACLQ 337 (602)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (602)
++|++++.|+++++..
T Consensus 941 ~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 941 EGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSTTSCSEEEEEECHHHHHH
T ss_pred CcCCCCCEEEEecCHHHHHh
Confidence 6899999999988754
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-32 Score=294.77 Aligned_cols=185 Identities=13% Similarity=0.120 Sum_probs=146.7
Q ss_pred eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCceEEEEcCCCc---cCCCCCHHH
Q 007487 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETT---LIGSLTVRE 201 (602)
Q Consensus 127 ~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 201 (602)
.++|+.+++|++++|+||||||||||+|+|+|+.+|+ +| + |.++|. ..+.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 4799999999999999999999999999999999876 49 8 999983 2456899999984 345679999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-C
Q 007487 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE--LVMRPHV----LFIDE-P 274 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a--L~~~P~i----LlLDE-P 274 (602)
|+ |+....... ...+++.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ ||||| |
T Consensus 202 ni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~--~------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 202 PT-WGQSLTSGA---TLLHNKQPMVKNFGLERINE--N------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGG--C------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hh-cccccccCc---chHHHHHHHHHHhCCCcccc--h------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 88 543211111 11233556778888876654 3 3899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh--H---HHHhcCCE-----EEEEe-CCeEEEEeCchhH
Q 007487 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 335 (602)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 335 (602)
|++||+. ...+.+++++ .|.|+|+++|+.. - ++..+||+ |++|+ +|+++ .|+++++
T Consensus 270 ts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999999 5555554444 3778888888864 1 56689999 99999 99999 8988765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=4.2e-28 Score=261.65 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=142.7
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------------------CCcee
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----------------------------------ARMYG 168 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~-----------------------------------~~~~G 168 (602)
.+++++++.+.+| +++|+|||||||||||++|+++..+. ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 99999999999999999998876521 01148
Q ss_pred EEEECCEeCCC------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC-----------------------CCc-----
Q 007487 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQL-----------------------PGF----- 214 (602)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------------------~~~----- 214 (602)
++.+||++... ....+++++|++.++.. +..+...|.-.... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987532 11237999998776533 44443332111000 000
Q ss_pred -------------------------------hhhHHHHHHHHHHHcCCchhh----------------hh---hhcCC--
Q 007487 215 -------------------------------FCQRKNVVEDAIHAMSLSDYA----------------NK---LIGGH-- 242 (602)
Q Consensus 215 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~ig~~-- 242 (602)
.....+.+.+.++.+++.+.. ++ .+..+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344555666554310 00 01000
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 007487 243 ---CYMKG-LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (602)
Q Consensus 243 ---~~~~~-LSGGqrqRv~IA~aL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (602)
..+.. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+++|++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 11112 6999999999999999999 9999999999999999999999999998 689999988886 4567899
Q ss_pred EEEEE----eCCeEEEEe
Q 007487 317 RICLL----SNGNTLFFG 330 (602)
Q Consensus 317 ~v~vL----~~G~iv~~G 330 (602)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=6.9e-25 Score=233.38 Aligned_cols=83 Identities=25% Similarity=0.329 Sum_probs=76.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 007487 244 YMKGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (602)
Q Consensus 244 ~~~~LSGGqrqRv~IA~aL~------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (602)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. +. ...||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~~-~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-EF-SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-HH-HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-HH-HHhCCE
Confidence 55689999999999999999 69999999999999999999999999999988899999988886 33 678999
Q ss_pred EEEEeCCeEEE
Q 007487 318 ICLLSNGNTLF 328 (602)
Q Consensus 318 v~vL~~G~iv~ 328 (602)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=2.4e-28 Score=240.13 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=97.8
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCceEEEEcCCCccCCCCCH
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (602)
.+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++ |+|.... .+.....+.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 45688986 79999999999999999999999999 8764 7773211 11112235699999975
Q ss_pred HHHH-HHHH----HhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007487 200 REYL-YYSA----LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (602)
Q Consensus 200 ~E~l-~~~~----~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 274 (602)
+||+ .+.. .+... ...++++++++. +| ||||||+|||||+.+|++||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~----~~~~~~~~~l~~------------------gl--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM----VEPEVIPKLMEA------------------GI--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ----CTTTHHHHHHHTTT----SCTTHHHHHHHT------------------TS--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHHh----ccHHHHHHHHHh------------------CC--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 4454 2210 01000 001223333332 22 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 007487 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (602)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (602)
|+| ++..+++.|+++ ++|+||| ++|+..
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 899999999998 6789999 899863
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.2e-24 Score=227.68 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=72.8
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE-
Q 007487 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI- 318 (602)
Q Consensus 244 ~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v- 318 (602)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|+++. +|.++|+++|++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 588999988885 467889987
Q ss_pred -EEEeCCeE-EEEeCchh
Q 007487 319 -CLLSNGNT-LFFGETLA 334 (602)
Q Consensus 319 -~vL~~G~i-v~~G~~~~ 334 (602)
++|.+|+. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77887754 33344333
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=7.3e-26 Score=215.28 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=99.7
Q ss_pred ceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC-CCCCHHHHHHHH
Q 007487 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYS 206 (602)
Q Consensus 128 ~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 206 (602)
|||+++++||+++|+||||||||||+|++.+ |...+++. ...++++|++.-. ...++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998652 21112111 0124555543210 0001111111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----
Q 007487 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----- 281 (602)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~----- 281 (602)
... +.....|.....+. ....|||||||++|||+|+.+|++|+|||||++||+.
T Consensus 64 -------------~~~-~~~~~~g~~~~~~~-------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 -------------YIV-SKRLQLGKLTVVDA-------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -------------HHH-HHHHHTTCCEEEES-------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -------------HHH-HHHHhCCCeEEEEC-------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 111 11223344333332 2356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 007487 282 -----------SALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (602)
Q Consensus 282 -----------~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (602)
....+.+.|++++++|.|+|+++|++ +++.
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 56999999999987899999998886 3443
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=9.2e-27 Score=250.51 Aligned_cols=172 Identities=12% Similarity=0.156 Sum_probs=135.0
Q ss_pred ccceeeceeeEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 007487 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge--------------------~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~ 181 (602)
.+.+|+++|+.+++|+ ++||+||||||||||+|+|+|+.+|+. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 3568999999999999 999999999999999999999999875 99999987542 1
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHH--HHHHHHHH
Q 007487 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG--ERRRVRIA 259 (602)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGG--qrqRv~IA 259 (602)
.++++|++ .++.+|+.|++.++. .+.+++++++.+++.+.. . .+ .|||| ||||+.||
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----------~~~~~~~~L~~~~L~~~~-~------~~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----------TNFPPDTYLEKMKFYEYD-F------FI-IISATRFKKNDIDIA 168 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----------SSCCHHHHHHHTTGGGCS-E------EE-EEESSCCCHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----------hHHHHHHHHHHcCCCccC-C------eE-EeCCCCccHHHHHHH
Confidence 27888875 567889988874321 113467889999987542 2 12 29999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEEeCChH-HHHhcCCEEE
Q 007487 260 RELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRIC 319 (602)
Q Consensus 260 ~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~t~h~~~~-~i~~~~D~v~ 319 (602)
++|+. +|++++|||||+|||+..+.++++.|+++. +.| .++++++|.... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 333 456676665532 2666777664
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=7.6e-25 Score=210.05 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCch
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (602)
.++|+||||||||||+++|+|++.. ...|... .... ...+.++|++|+. ++.+++ + + +...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-S--SKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-E--ETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-H--hhcC--
Confidence 5899999999999999999999742 1234221 1111 2235689999975 222222 0 0 0000
Q ss_pred hhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 007487 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMV 288 (602)
Q Consensus 216 ~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~a-----L~~~P~iLlLDE--PtsgLD~~~~~~i~~ 288 (602)
.-.+..++ ++..||||||||++||++ |+.+|++||||| ||++||+..+..+.+
T Consensus 65 --------------~~~~~~~~------~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 --------------TSKKLVGS------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp --------------CCSSEETT------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred --------------Cccccccc------cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00012233 445899999999999996 999999999999 999999999999998
Q ss_pred HHHHHHHcCCEEEEEEe--CChHHHHhcCCEEEEEeCCeEEE
Q 007487 289 TLKKLASTGCTLLFTIN--QSSTEVFGLFDRICLLSNGNTLF 328 (602)
Q Consensus 289 ~L~~l~~~g~tvi~t~h--~~~~~i~~~~D~v~vL~~G~iv~ 328 (602)
.|++ .+.|+|+++| |+...+..++|+ .+|++++
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8876 5677888887 677788888988 5566665
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=4e-24 Score=221.69 Aligned_cols=172 Identities=14% Similarity=0.077 Sum_probs=133.6
Q ss_pred eeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCc-c
Q 007487 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (602)
Q Consensus 126 L~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (602)
++++|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 356888899999999999999999999999999998765 9999999764221 125899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 007487 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFI 271 (602)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlL 271 (602)
+|.+||+|++.++.... . + ..+++.+|+.+..++.++ +|| |||++|||+|+.+|+ +|+|
T Consensus 167 ~~~~~v~e~l~~~~~~~--~---d-----~~lldt~gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG--Y---D-----VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp CHHHHHHHHHHHHHHTT--C---S-----EEEECCCCCSSCCHHHHH------HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--C---c-----chHHhcCCCCcchhHHHH------HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999998754211 0 0 134567788777677665 899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 007487 272 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (602)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (602)
| ||+|||+..+ ++++. +.|.|+|+++|.+. +.+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999998865 34555 35899999888432 334455678888888864
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=1.9e-26 Score=225.78 Aligned_cols=177 Identities=12% Similarity=0.091 Sum_probs=119.5
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCceEEEEcCCCccCCCCCHHH
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
..+++| ..+++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|++.+++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 456777 68889999999999999999999999999852 223322222221 112346899999988888888877
Q ss_pred HHHHHHHh----cC-CCchhhHHHHHHHH------HHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 007487 202 YLYYSALL----QL-PGFFCQRKNVVEDA------IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (602)
Q Consensus 202 ~l~~~~~~----~~-~~~~~~~~~~v~~~------l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 270 (602)
++...... .. .....+.++++++. ++.+|+.+..++.+ +.|| +|+.+|++++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP------EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT------TSEE-----------EEEECSCHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC------CcEE-----------EEEECCCHHH
Confidence 76321100 00 01112233445554 55666666666644 4788 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe
Q 007487 271 IDEPLYHL----DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (602)
Q Consensus 271 LDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (602)
|||||+|| |+..+.++.++++++++ .|.|+|+++|+. +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999974 589999987765 68999999999984
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.5e-25 Score=231.98 Aligned_cols=167 Identities=12% Similarity=0.116 Sum_probs=126.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (602)
|+++||++.|. ..+|+++|+.+++|++++|+||||||||||+++|+|++ . |+|. +
T Consensus 102 i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~----G~I~-------------~ 156 (305)
T 2v9p_A 102 FNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--G----GSVL-------------S 156 (305)
T ss_dssp HHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--T----CEEE-------------C
T ss_pred EEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--C----ceEE-------------E
Confidence 67888888773 46999999999999999999999999999999999998 2 8883 4
Q ss_pred EEcCCCccCCCCCHHH-HHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 007487 186 FVERETTLIGSLTVRE-YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (602)
Q Consensus 186 yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~ 264 (602)
|++|++.++. .|++| |+.+. +.. ...+.+.++.+ |.+..+ +..|||||||| ||||+.
T Consensus 157 ~v~q~~~lf~-~ti~~~ni~~~-----~~~----~~~~~~~i~~~-L~~gld--------g~~LSgGqkQR---ARAll~ 214 (305)
T 2v9p_A 157 FANHKSHFWL-ASLADTRAALV-----DDA----THACWRYFDTY-LRNALD--------GYPVSIDRKHK---AAVQIK 214 (305)
T ss_dssp GGGTTSGGGG-GGGTTCSCEEE-----EEE----CHHHHHHHHHT-TTGGGG--------TCCEECCCSSC---CCCEEC
T ss_pred EecCcccccc-ccHHHHhhccC-----ccc----cHHHHHHHHHH-hHccCC--------ccCcCHHHHHH---HHHHhC
Confidence 5678887776 47876 77442 111 11345555553 333333 34899999999 999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHhhhh
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (602)
+|+||| ||+||+.++..+..+ +|++ .....||+| +|++|++++.|+.+++...|.
T Consensus 215 ~p~iLl----Ts~LD~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~ 269 (305)
T 2v9p_A 215 APPLLV----TSNIDVQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFV 269 (305)
T ss_dssp CCCEEE----EESSCSTTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred CCCEEE----ECCCCHHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence 999999 999999999888621 4544 345789999 999999999999988744443
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=5.9e-23 Score=217.23 Aligned_cols=171 Identities=14% Similarity=0.086 Sum_probs=134.1
Q ss_pred eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCc-cC
Q 007487 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (602)
Q Consensus 127 ~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (602)
..+|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788899999999999999999999999999998764 9999999764321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 007487 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFID 272 (602)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLD 272 (602)
|.+|++|++.++..... + ..+++.+|+.+..++++. +|| |||++|||+|+.+|+ +|+||
T Consensus 225 p~~tv~e~l~~~~~~~~-----d-----~~lldt~Gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGY-----D-----VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHHTTC-----S-----EEEEECCCCSSCCHHHHH------HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhhHHHHHHHHHhCCC-----H-----HHHHHhcCCChhhhhHHH------HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999999987642110 0 124566788776666655 899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCC--------hHHHHhcCCEEEEEeCCeE
Q 007487 273 EPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQS--------STEVFGLFDRICLLSNGNT 326 (602)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~--------~~~i~~~~D~v~vL~~G~i 326 (602)
||+|||+..+. +++. +.|.|+|+++|.+ .+.+....+.|..+..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999988653 4555 3589999988853 2334455678888887763
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=1.7e-23 Score=213.60 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCch
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (602)
.++|+||||||||||+|+|+|+.+|+. |+|.++|++... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 489999999999999999999998874 999999986532 23579999999999999999999977643221
Q ss_pred hhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007487 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (602)
Q Consensus 216 ~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~ 295 (602)
....+.+.+.++ .+..+..++ +||||||||++|||+++. ++++|||+.|||+.. .+.++.+.+
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 111123333333 455566554 899999999999999886 999999999999987 556666765
Q ss_pred cCCEEEEEEeCC
Q 007487 296 TGCTLLFTINQS 307 (602)
Q Consensus 296 ~g~tvi~t~h~~ 307 (602)
. .++|+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8888888764
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=1.8e-20 Score=198.40 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=74.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 007487 244 YMK-GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (602)
Q Consensus 244 ~~~-~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (602)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---
Confidence 345 69999999999999999 8999999999999999999999999998874 57777666 43 3
Q ss_pred cCCEEEEEeCCeEEEEeCchhH
Q 007487 314 LFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 314 ~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998765
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=3.8e-22 Score=209.37 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=104.9
Q ss_pred eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHH
Q 007487 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 125 iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
+++++|+.+++|++++|+||||||||||+++|+|+++|+. |.|.++|.+.-. ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEe-------------
Confidence 7999999999999999999999999999999999999874 999999853100 001111111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007487 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (602)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 007487 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (602)
Q Consensus 282 ~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (602)
.++.+.|+.+...+.|+|+++|.++ +...+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2466778877654557899999875 677899999998775
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.83 E-value=8.7e-24 Score=229.65 Aligned_cols=191 Identities=10% Similarity=0.022 Sum_probs=149.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~---~~~~-- 179 (602)
.++++|+++.|.. ..++|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 4778888887742 35699999 999999999999999999999999999999887 499999997 3211
Q ss_pred --------CCceEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCH
Q 007487 180 --------PYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (602)
Q Consensus 180 --------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSG 250 (602)
..+.++|++|+ +.+++.+||.+|+.+.+...... .+ ......+. +..||+
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-----~~---------~v~~~ld~-------l~~lS~ 261 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-----GQ---------HVLLIMDS-------LTRYAM 261 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-----TC---------EEEEEEEC-------HHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-----CC---------CHHHHHHh-------HHHHHH
Confidence 12468999995 56677889999997755321000 00 00111121 237999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEEeCChHHHHhcCCEEEEE
Q 007487 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICLL 321 (602)
Q Consensus 251 GqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~t~h~~~~~i~~~~D~v~vL 321 (602)
|| |||+|| +.+|++ |+|||+.....+.++++++.+ + |. ||++++|+.. ..+||++++|
T Consensus 262 g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l 328 (438)
T 2dpy_A 262 AQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAI 328 (438)
T ss_dssp HH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHH
T ss_pred HH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEE
Confidence 99 999999 889988 999999999999999999876 3 64 8888888774 5679999999
Q ss_pred eCCeEEEEeCchhHHh
Q 007487 322 SNGNTLFFGETLACLQ 337 (602)
Q Consensus 322 ~~G~iv~~G~~~~~~~ 337 (602)
.+|+++..|++.+...
T Consensus 329 ~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 329 LDGHIVLSRRLAEAGH 344 (438)
T ss_dssp SSEEEEECHHHHHTTC
T ss_pred eCcEEEEeCCHHHccC
Confidence 9999999998877543
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=5.9e-25 Score=217.36 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=108.3
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CCceEEEEcCCCccCCCC
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------PYGSYGFVERETTLIGSL 197 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~l 197 (602)
.-|+|||+++++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ..+.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 3689999999999999999999999999999999988 4 67888 654211 124688999987766543
Q ss_pred C-HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEEE
Q 007487 198 T-VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI-----ARELVMRPHVLFI 271 (602)
Q Consensus 198 T-V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~I-----A~aL~~~P~iLlL 271 (602)
+ +.+++.+. .... .........++++++...+. ..+ .+||||||||++| +++++.+|++++|
T Consensus 84 ~~~~~~l~~~-~~~~-~~~g~~~~~i~~~l~~~~~~-il~---------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 84 LKNEDFLEYD-NYAN-NFYGTLKSEYDKAKEQNKIC-LFE---------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHTTCEEEEE-EETT-EEEEEEHHHHHHHHHTTCEE-EEE---------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhccchhhhh-hccc-ccCCCcHHHHHHHHhCCCcE-EEE---------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 2 11111100 0000 00011123466677654321 111 3799999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 007487 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (602)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (602)
||||+++|..+...|.+.|+++.++ .+ .+| ...||.|++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~-~~---~~h------~~~~d~iiv~~ 192 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE-LH---EAN------LLNFNLSIIND 192 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH-HH---HHT------TSCCSEEEECS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-HH---hhc------ccCCCEEEECC
Confidence 9999999999999999999887542 22 123 14467776654
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=1.5e-20 Score=197.87 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=69.5
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 007487 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (602)
Q Consensus 244 ~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (602)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||+++|++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45689999999 67778888889999999999999999999999999999987889999988884 57889999
Q ss_pred EEEEe
Q 007487 318 ICLLS 322 (602)
Q Consensus 318 v~vL~ 322 (602)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 82
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=1e-23 Score=219.52 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=97.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (602)
+++|+++||+||||||||||+++|+|++++.. |. +.+++|+|++.+++. |++||+.+......+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence 78999999999999999999999999988752 32 358999999999988 999998542111111
Q ss_pred CchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007487 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (602)
Q Consensus 213 ~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~ 280 (602)
. ....+.+.+.++.++ .+..+.. +..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 151 ~--~~d~~~~~~~L~~l~-~~~~~~~------~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 E--SYNRRALMRFVTSVK-SGSDYAC------APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp G--GBCHHHHHHHHHHHH-TTCSCEE------EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred h--HHHHHHHHHHHHHhC-CCcccCC------cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1 223456778888877 4333333 348999999999999999999999999999999986
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.1e-20 Score=220.27 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=124.5
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCch-------hhHHHHHH
Q 007487 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-------CQRKNVVE 223 (602)
Q Consensus 151 TLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-------~~~~~~v~ 223 (602)
|...|..+++++.. |+|.++|+++. -+..+||.|++.|...+...... .+..++..
T Consensus 383 ~C~~C~g~rl~~~~---~~V~i~G~~i~--------------~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNREA---LSVKINGLNIH--------------EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTTG---GGEEETTEEHH--------------HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChHh---cCcEECCccHH--------------HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34455556666654 88999987642 13457888988775444332211 01112345
Q ss_pred HHHHHcCCchh-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 007487 224 DAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (602)
Q Consensus 224 ~~l~~l~L~~~-~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv 300 (602)
+.+..+||... .++.+ .+|||||||||+|||+|+.+|+ +|||||||+|||+.....++++|++++++|.||
T Consensus 446 ~~L~~vgL~~l~l~r~~------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHTTTCTTCBTTSBG------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHcCCccccccCCc------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 67888999754 46644 4999999999999999999887 999999999999999999999999999889999
Q ss_pred EEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCchhHHh
Q 007487 301 LFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (602)
Q Consensus 301 i~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (602)
|+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 520 ivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 520 IVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9988875 444 559999999 8999999999998754
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=4.4e-21 Score=197.60 Aligned_cols=183 Identities=14% Similarity=0.065 Sum_probs=117.1
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCceEEEEcCCCccCCCCCH
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (602)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++..+.++.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 458999999999999999999999999999999999987653 6 56543322110 0112222222211 122
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 007487 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVMRPHVLFIDEPLY-- 276 (602)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPts-- 276 (602)
.+++.... + ...+..+.++++++..++. .+ ..+.++|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~----~~~~~~~~~~~~l~~~~l~--i~------~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREI-I----ENGKFDQWFDELFGNDTFH--LY------DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHH-H----HHTHHHHHHHHHHSSSCEE--EE------CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCC-C----CHHHHHHHHHHHhccCCEE--EE------CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 23332211 0 0012223334443322221 11 1234689999 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHH-cCCEEEEEEeCC-hH--------------------HHHhcCCEEEEEeCCeE
Q 007487 277 -H---LDS-VSALLMMVTLKKLAS-TGCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 326 (602)
Q Consensus 277 -g---LD~-~~~~~i~~~L~~l~~-~g~tvi~t~h~~-~~--------------------~i~~~~D~v~vL~~G~i 326 (602)
+ +|. .....+++.|+++++ .|+|||+++|.. .. .+.+.||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 677889999999985 499999988885 13 67789999999998875
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=3.4e-20 Score=206.34 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=119.6
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 007487 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (602)
Q Consensus 130 s~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (602)
++.+.+|++++|+|+||||||||+++++|..++. |+ +.+.|++|++. ..+.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 5689999999999999999999999999987664 32 12445566531 1222222 1
Q ss_pred cCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHH
Q 007487 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SAL 284 (602)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~-----~~~ 284 (602)
+... . +++ +...|+.+..+. .+..|||||+||+++|+++..+|++|++| ||+|||.. .+.
T Consensus 330 ~~g~---~----~~~-~~~~g~~~~~~~------~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 330 SWGM---D----FEE-MERQNLLKIVCA------YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp TTSC---C----HHH-HHHTTSEEECCC------CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred HcCC---C----HHH-HHhCCCEEEEEe------ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 1111 1 112 234566555544 34589999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCh---------HHHHhcCCEEEEEeCCe
Q 007487 285 LMMVTLKKLASTGCTLLFTINQSS---------TEVFGLFDRICLLSNGN 325 (602)
Q Consensus 285 ~i~~~L~~l~~~g~tvi~t~h~~~---------~~i~~~~D~v~vL~~G~ 325 (602)
.+.++++.+++.|.|+|+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999988999999999871 35678899999999887
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.80 E-value=8.5e-20 Score=202.76 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 007487 245 MKGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (602)
Q Consensus 245 ~~~L-SGGqrqRv~IA~aL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (602)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++ . +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 89999999886 3 44679999999
Q ss_pred eCC
Q 007487 322 SNG 324 (602)
Q Consensus 322 ~~G 324 (602)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 665
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=2.4e-21 Score=194.53 Aligned_cols=170 Identities=11% Similarity=0.057 Sum_probs=104.0
Q ss_pred cccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHH
Q 007487 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (602)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (602)
+.+.+|+|+|+++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 323333 1235689999985 77789999
Q ss_pred HHHHHHHHhcCCCch-hhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 007487 201 EYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (602)
Q Consensus 201 E~l~~~~~~~~~~~~-~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD 279 (602)
|++.+.......... ....+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~------~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTV------EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCE------EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCe------ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 998764322111111 11223344555543 222333 345899999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 007487 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (602)
Q Consensus 280 ~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (602)
.. +.++ .+.+|++++|........+++++ ++|+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 64 2222 36788888876443323344444 5564
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=3.9e-22 Score=221.95 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=123.0
Q ss_pred ccceeeceee-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccC
Q 007487 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (602)
Q Consensus 122 ~~~iL~~vs~-~i~~Ge~~aIlG~sGsGKSTLL~~--L~Gl~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (602)
..++|+++++ .+++||+++|+||||||||||+++ ++|+.+|+. |.|+++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4579999999 999999999999999999999999 789988764 999999976311 124578888875422
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007487 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (602)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 274 (602)
+. +.+ ...... +...++++.+++.+..++.+. .||||| |+++++|||
T Consensus 101 ~~------l~~---~~~~~~-----~~~~~~l~~~~l~~~~~~~~~------~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 101 GK------LFI---LDASPD-----PEGQEVVGGFDLSALIERINY------AIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp TS------EEE---EECCCC-----SSCCSCCSSHHHHHHHHHHHH------HHHHHT-------------CSEEEEECS
T ss_pred Cc------EEE---EecCcc-----cchhhhhcccCHHHHHHHHHH------HHHHcC-------------CCEEEECCH
Confidence 11 100 000000 001223445555566666554 788775 779999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH--------HHhcCCEEEEEeCC
Q 007487 275 LY-----HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSNG 324 (602)
Q Consensus 275 ts-----gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~--------i~~~~D~v~vL~~G 324 (602)
|+ +||+..+..+.++++++++.|+|||+++|+.... +..+||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 98 4699999999999999998899999999998532 34569999999983
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=1.3e-20 Score=223.05 Aligned_cols=172 Identities=19% Similarity=0.157 Sum_probs=120.2
Q ss_pred eEEEEe-----EEEEEecccccccceeeceeeEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007487 105 SVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (602)
Q Consensus 105 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i 172 (602)
.++++| |++.+. +.+.+++|+++.+.+ |++++|+||||||||||||+| |++.+-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 589999 887773 235799999999987 999999999999999999999 987531
Q ss_pred CCEeCCCCCceEE-EEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHH
Q 007487 173 NGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (602)
Q Consensus 173 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGG 251 (602)
.++| ||||+.. .+||.|++.. .+|+.+..... ...+|+|
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~------~stf~~e 855 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSG------ESTFFVE 855 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEEE----------------------ECC---------------CHHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhc------hhhhHHH
Confidence 2344 8888753 4455555410 12222222221 1256776
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE--
Q 007487 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL-- 327 (602)
Q Consensus 252 qrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-- 327 (602)
++ ++++|++++.+|+++|||||++|+|+... ..++..|+.++++ |+++|++||+. +.+..++|++.++ +|++.
T Consensus 856 m~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 856 LS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp HH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC
T ss_pred HH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEE
Confidence 66 49999999999999999999999999985 5578999999876 99999988876 5777889999887 58887
Q ss_pred EEeCch
Q 007487 328 FFGETL 333 (602)
Q Consensus 328 ~~G~~~ 333 (602)
+.|+++
T Consensus 933 ~~~~~~ 938 (1022)
T 2o8b_B 933 VENECE 938 (1022)
T ss_dssp ------
T ss_pred EecCcc
Confidence 455543
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=3.8e-19 Score=206.38 Aligned_cols=134 Identities=20% Similarity=0.265 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCCchh-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 007487 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (602)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~l~L~~~-~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~ 265 (602)
..+||.|++.|...+.++... .+..+++ +.++.+||... .++.++ +|||||||||+||++|..+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~------tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG------TLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG------GCCHHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc------cCCHHHHHHHHHHHHHhhC
Confidence 458999999997776655421 1233444 45888999754 566554 9999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCchhHHh
Q 007487 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (602)
Q Consensus 266 P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (602)
| ++|||||||+|||+.....+++.|++|++.|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 5 99999999999999999999999999998899999988876 454 579999999 7999999999988753
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=3.1e-20 Score=217.40 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=113.8
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCcc
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L--------~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (602)
.+.+++|+++.+.+|++++|+||||||||||||+| .|...|.. +. .++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~-------------~~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SA-------------EVSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EE-------------EEECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---cc-------------cchHH---HHH
Confidence 45799999999999999999999999999999999 44333320 10 01100 001
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEE
Q 007487 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFI 271 (602)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlL 271 (602)
+..+|+.+.. ..++|+|+++++.+|++| +.+|+++||
T Consensus 709 --------------------------------~~~ig~~d~l---------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 709 --------------------------------LARVGAGDSQ---------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp --------------------------------EEECC------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred --------------------------------HHhcCchhhH---------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 1112222111 137899999999999888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHH
Q 007487 272 DEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (602)
Q Consensus 272 DEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (602)
||||+|||+.....+ ..+++.+++ .|+++|++||+. ++..+||++..+.+|++...++.+++.
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence 999999999999888 677788876 599999999884 567899999999999999998887654
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=3.7e-21 Score=203.05 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=134.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~------ 178 (602)
.++.+++++.|.. ..++|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~t----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFIL----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEECC----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred CeeecccceecCC----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHH
Confidence 3567788887742 35799999 999999999999999999999999999999887 499999886410
Q ss_pred -C-----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHH
Q 007487 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (602)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGq 252 (602)
. ..+.+.++.|.+. +..+.+.... ....+.+.....+- +... . .+.+..||+||
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~----------~~~~~ae~~~~~~~-~vl~-~---ld~~~~lS~g~ 176 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMKAAF----------TATTIAEYFRDQGK-NVLL-M---MDSVTRYARAA 176 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHHHHH----------HHHHHHHHHHTTTC-EEEE-E---EETHHHHHHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHHHHH----------HHHHHHHHHHhccc-cHHH-H---HhhHHHHHHHH
Confidence 0 0124566666431 2222221100 00001111111110 0000 0 02345899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEeCChHHHHhcCCEEEEEeCCe
Q 007487 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGN 325 (602)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (602)
|||++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++|+.. ..+||++++|.+|+
T Consensus 177 -r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~ 243 (347)
T 2obl_A 177 -RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGH 243 (347)
T ss_dssp -HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEE
T ss_pred -HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcE
Confidence 899999 688887 999999999999999999974 476 7888777764 46799999999999
Q ss_pred EEEEeCchhHH
Q 007487 326 TLFFGETLACL 336 (602)
Q Consensus 326 iv~~G~~~~~~ 336 (602)
++..|+..+..
T Consensus 244 Ivl~~~l~~~~ 254 (347)
T 2obl_A 244 IVLTRELAEEN 254 (347)
T ss_dssp EEBCHHHHTTT
T ss_pred EEEeCCHHHcC
Confidence 99999887653
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=2e-19 Score=208.08 Aligned_cols=171 Identities=16% Similarity=0.132 Sum_probs=125.7
Q ss_pred CCCCcHHHHHHHHHcCCCCCC------CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc-------
Q 007487 144 PAKSGKSTLLRAIAGRLPHSA------RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------- 210 (602)
Q Consensus 144 ~sGsGKSTLL~~L~Gl~~~~~------~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------- 210 (602)
.+..||++|.+.+....-|.. ...|+|.++|+++.. ...+++.|.+.|.....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~--------------~~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITE--------------LSRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHH--------------HHHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHH--------------HhhcCHHHHHHHHHhhhhhhhhcc
Confidence 456789999998877432210 124778888765321 01244555544433321
Q ss_pred -----CCCc--------hhhHHHHHHHHHHHcCCchh-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCC
Q 007487 211 -----LPGF--------FCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVLFIDEP 274 (602)
Q Consensus 211 -----~~~~--------~~~~~~~v~~~l~~l~L~~~-~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEP 274 (602)
+... ..+..++++ .++.+||... .++.+ ..|||||||||+||++|..+| ++||||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~------~tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST------PTLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 0000 023345555 6889999765 56654 499999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCchhHHh
Q 007487 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (602)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (602)
|+|||+.....++++|++|++.|.|||+++|+. + +...||+|++| ++|++++.|+++++..
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999999999999999999998899999988876 3 55789999999 7999999999988754
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=3.2e-20 Score=184.99 Aligned_cols=167 Identities=14% Similarity=0.064 Sum_probs=103.2
Q ss_pred eeece-eeEEeCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccCCCC
Q 007487 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA--GRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSL 197 (602)
Q Consensus 125 iL~~v-s~~i~~Ge~~aIlG~sGsGKSTLL~~L~--Gl~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~l 197 (602)
.|+++ .+-+++|++++|+||||||||||+++|+ |+.+++. |.+.+++..... ..+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---eEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34443 2478999999999999999999999999 6634432 667776643210 012345555544333333
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 007487 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (602)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsg 277 (602)
++.++...... .........+ ...+.++..+...+..-..+|+++++||||++
T Consensus 95 ~~~~~~~~~~~--------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 95 AIVDGVSSVVG--------LPSEEKFVLE-------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEEC----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEEccccccc--------cccccceecc-------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 33333211000 0000000000 12334444444444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH---------HhcC-CEEEEEe
Q 007487 278 LD-----SVSALLMMVTLKKLASTGCTLLFTINQSSTEV---------FGLF-DRICLLS 322 (602)
Q Consensus 278 LD-----~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i---------~~~~-D~v~vL~ 322 (602)
|| +..+..+.++++.+++.|+|||+++|+.. ++ ..+| |+|++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 67777799999999888999999888874 55 5788 9999995
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=7.5e-19 Score=204.56 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=109.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCCchh-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 007487 194 IGSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (602)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~l~L~~~-~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~ 264 (602)
+..+||.|.+.|...+.++... .+..+++ +.++.+||..+ .++.++ +|||||||||+||++|..
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~------tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA------TLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG------GCCHHHHHHHHHHHHHTT
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc------cCCHHHHHHHHHHHHHhh
Confidence 3468999999885555444311 1223444 45788898754 566554 999999999999999999
Q ss_pred C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCchhHH
Q 007487 265 R--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (602)
Q Consensus 265 ~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (602)
+ |++|||||||+|||+.....+++.|++|++.|.|||+++|+. +. ...||+|++| ++|++++.|+++++.
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 9 589999999999999999999999999999999999988875 44 4579999999 799999999998875
Q ss_pred h
Q 007487 337 Q 337 (602)
Q Consensus 337 ~ 337 (602)
.
T Consensus 617 ~ 617 (993)
T 2ygr_A 617 R 617 (993)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=3e-18 Score=159.17 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 007487 244 YMKGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (602)
Q Consensus 244 ~~~~LSGGqrqRv~IA------~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (602)
.+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|+. ++...||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 4569999999999876 899999999999999999999999999999999987799999999986 46789999
Q ss_pred EEEE--eCCeE
Q 007487 318 ICLL--SNGNT 326 (602)
Q Consensus 318 v~vL--~~G~i 326 (602)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=1.6e-19 Score=177.58 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=93.7
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--C--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--A--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~--~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (602)
+-+++|++++|+||||||||||+++|+|...+. . ...|.|++++... ...+.+++++|+..+++. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~-- 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIY-- 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEE--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEE--
Confidence 578999999999999999999999999954431 1 0124555555321 000112222222222211 2222211
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q 007487 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVM-------RPHVLFIDEPLYHL 278 (602)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGq-rqRv~IA~aL~~-------~P~iLlLDEPtsgL 278 (602)
.....++++ ++++..+++++. +|+++++||||++|
T Consensus 96 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 96 -------------------------------------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp -------------------------------------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred -------------------------------------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 111333333 333556666665 99999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHH-cCCEEEEEEeCCh---HHHHhcCCEEEEEeCCe
Q 007487 279 DSV-------S-----ALLMMVTLKKLAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 325 (602)
Q Consensus 279 D~~-------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~---~~i~~~~D~v~vL~~G~ 325 (602)
|+. . ..++++.|+++++ .|+|||+++|... ..+...+|++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 2 2378888888864 5999999888432 24778899999998753
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=3e-19 Score=181.29 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=97.8
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (602)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998774 1399999886532 222221000
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 007487 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (602)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (602)
. .+ +.+|+.. ..+ |++||++|..+|++|++|||| |+.+.
T Consensus 75 -----v------~q---------~~~gl~~------------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 -----V------NQ---------REVGEDT------------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -----E------EE---------EEBTTTB------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -----e------eH---------HHhCCCH------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 0 00 0122211 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 007487 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (602)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (602)
..++ +. ++.|.+|++++|+.. +...+||++.|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 457999999999864 5678999888754
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=9.3e-21 Score=185.00 Aligned_cols=146 Identities=19% Similarity=0.159 Sum_probs=113.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC--CCCCHHHHHHHHHHhc
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSALLQ 210 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~ 210 (602)
.++|+++||+||||||||||+++|+|++++ .++|++|++.++ +.+|+.+++.+. +.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~--~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN--YD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--TT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--CC
Confidence 358999999999999999999999998642 478999998776 567998886442 11
Q ss_pred CCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CC
Q 007487 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LD 279 (602)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGq----rqRv~IA~aL~~~P~iLlLDEPtsg-------LD 279 (602)
.+. ....+++.++++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ ||
T Consensus 61 ~~~--~~~~~~~~~~l~~~~~~~~~~~~------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 61 HPD--AFDLALYLEHAQALLRGLPVEMP------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp SGG--GBCHHHHHHHHHHHHTTCCEEEC------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred Chh--hhhHHHHHHHHHHHHcCCCcCCC------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 111 12345577788888876655442 34799996 4789999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH-HHcCCEEEEEEeCCh
Q 007487 280 SVSALLMMVTLKKL-ASTGCTLLFTINQSS 308 (602)
Q Consensus 280 ~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~ 308 (602)
+.....+.+.+++. .+.|.|++.++|+..
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999886 466889888778743
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.72 E-value=5.1e-19 Score=183.42 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=107.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCccCCCCCHHHHH
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~l 203 (602)
+|++++|+||||||||||+++|+|+++|.+ |+|.++|.+.... +..++|++|+..++|..||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999998875 9999999874221 13589999999999999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 007487 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (602)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (602)
.++..... . ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 178 ~~~~~~~~-d---------~~llDt~G~~~~~~~~---------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 178 QAMKARGY-D---------LLFVDTAGRLHTKHNL---------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHHTC-S---------EEEECCCCCCTTCHHH---------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHHhCCC-C---------EEEecCCCCCCchHHH---------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 76432110 0 0122334444333332 344458999999999999995544 5565555
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCC
Q 007487 284 LLMMVTLKKLAS-TGCTLLFTINQS 307 (602)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~ 307 (602)
.++++.++++.+ .|.|+|+++|.+
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 667777888775 489999989975
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.71 E-value=1.8e-18 Score=199.19 Aligned_cols=147 Identities=20% Similarity=0.158 Sum_probs=106.5
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHH
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (602)
.+.+++|+|+. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHH
Confidence 35789999998 99999999999999999999999863 332 5432 112235677665 55566666
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---C
Q 007487 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---L 275 (602)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---t 275 (602)
||+. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 630 d~l~-----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 630 DDLA-----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHHH-----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 5541 15799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 007487 276 YHLDSVSA-LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (602)
Q Consensus 276 sgLD~~~~-~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (602)
++||..+. ..+++.|++ .|.|+|++||+. +...++ .-.+.++++.....
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEECC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEEc
Confidence 99998875 577777766 588999988875 345555 22234555555443
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.70 E-value=1.2e-17 Score=195.02 Aligned_cols=145 Identities=15% Similarity=0.138 Sum_probs=99.9
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
.+.+++|+++.+++|++++|+||||||||||||+|+++.-.. ..| .........+++ -+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~~vpa~~~~i~~---~d~i~~~ig~~- 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------SYVPAEEATIGI---VDGIFTRMGAA- 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------CCBSSSEEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------ccccchhhhhhH---HHHHHHhCChH-
Confidence 467999999999999999999999999999999998653110 001 000000011111 11122222222
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007487 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (602)
+..... ...+|+|++|++.|+++ +.+|+++||||||+|||+.
T Consensus 727 -------------------------------d~l~~~------~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 727 -------------------------------DNIYKG------RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -------------------------------HHHHHh------HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 222221 23789999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHH-cCCEEEEEEeCChHHHHhcCCEE
Q 007487 282 SALLMM-VTLKKLAS-TGCTLLFTINQSSTEVFGLFDRI 318 (602)
Q Consensus 282 ~~~~i~-~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v 318 (602)
....+. .+++.+++ .|+|+|+++|+. ++.+++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999997 77888875 699999998885 455666654
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=3.4e-19 Score=184.61 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=84.6
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCceEE
Q 007487 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYG 185 (602)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl-~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (602)
.||++.| +.+.+++++++.+ +|+|+||+|||||++.|+|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3566666 3457999999998 99999999999999999997 6665 37 8877765321 124578
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 007487 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (602)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~ 265 (602)
+++|++.+...+||.|++.++..... . +....+.+. +.+..+..+ +++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~----~---e~~~~l~~~--l~~~~~~~~------~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC----R---DCFKTIISY--IDEQFERYL------HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC------------------CTTHHHH--HHHHHHHHH------HHHTSSCCTTCCCCCCCE--
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc----H---HHHHHHHHH--HHHHHHHHH------HHhCHHhhhhhhhhhhhh--
Confidence 99998888888999998866432210 0 001111111 123344544 489999999999999885
Q ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCEEEEEEeCC
Q 007487 266 PHVLFIDEPLYH-LDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (602)
Q Consensus 266 P~iLlLDEPtsg-LD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (602)
++++||||++ ||+... +.++++.++ +.++|++.|+.
T Consensus 130 --ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp --EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred --eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 9999999985 999873 566666543 66777766664
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.68 E-value=5.2e-18 Score=196.32 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=111.2
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
.+.+++|+++. ++|++++|+||||||||||||+|+|+..... .| .........+++++| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35699999999 9999999999999999999999999743210 12 111111223555544 555666666
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007487 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (602)
++..+ ...+|+|++ +++.+..++.+|+++|||||++|+|+.
T Consensus 662 ~l~~~--------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 662 DLASG--------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHhh--------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChh
Confidence 55210 014566665 445555678999999999999999998
Q ss_pred HHHHH-HHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhH
Q 007487 282 SALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 282 ~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
....+ ...++.+.+ .|.++|++||+. ++..+||++..+.+|++.+....+++
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~~~l 756 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHGDTI 756 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcCCcE
Confidence 87776 788888887 499999998886 34578998888888888776554433
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.67 E-value=1.3e-17 Score=163.78 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=108.7
Q ss_pred cceeeceee-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 007487 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 123 ~~iL~~vs~-~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
...|+++.+ .+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+ .+..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~--------------------~~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTE--------------------ESRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESS--------------------SCHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcc--------------------cCHHH
Confidence 457888885 899999999999999999999999998765432 555553321 11111
Q ss_pred HHHHHHHhcCCCchhhHH--HHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q 007487 202 YLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYH 277 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPtsg 277 (602)
.................. ..++.....++ .. ......|.+|.++...+.+...+|+ +|++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQ-----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CT-----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----ce-----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 111100111100000000 00000000000 00 0112459999999888888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHH-cCCEEEEEEeCCh-------HHHHhcCCEEEEEeCC
Q 007487 278 L--DSVSALLMMVTLKKLAS-TGCTLLFTINQSS-------TEVFGLFDRICLLSNG 324 (602)
Q Consensus 278 L--D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~-------~~i~~~~D~v~vL~~G 324 (602)
+ |+....++++.|+++++ .|.|||+++|... ..+.++||+|++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99999999999999974 5899999888762 3478899999999754
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.67 E-value=1.7e-16 Score=162.06 Aligned_cols=149 Identities=14% Similarity=0.194 Sum_probs=103.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (602)
+++|++++|+||||||||||++.|++.... |++. .|.+.. ....+.|+..++... .+.+.+. .+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~---~~g~~ 93 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLH---ALGAH 93 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHH---HHHTT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHH---HHHhh
Confidence 679999999999999999999999986543 5553 354321 123577876654320 1111211 11111
Q ss_pred CchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHH
Q 007487 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVSA---LLMM 287 (602)
Q Consensus 213 ~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPts--gLD~~~~---~~i~ 287 (602)
. .....+++++.+++.+..++ .+..||+||+|++ ++++.+|+++++||||+ ++|.... .+++
T Consensus 94 ~----~~~~~~~~~~~l~l~~~~~~------~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 94 L----SAEERQAVADGLLIQPLIGS------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp S----CHHHHHHHHHHEEECCCTTS------CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred c----ChhhhhhccCceEEeecCCC------CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 1 12335667788887765544 3458999998875 68889999999999999 9997544 8888
Q ss_pred HHHHHHH-HcCCEEEEEEeCC
Q 007487 288 VTLKKLA-STGCTLLFTINQS 307 (602)
Q Consensus 288 ~~L~~l~-~~g~tvi~t~h~~ 307 (602)
+.|++++ +.|+|||+++|+.
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 9999987 5699999987765
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.66 E-value=2.4e-18 Score=181.90 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=100.4
Q ss_pred ceeece-eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCceEEEEcCCCccCCCCC
Q 007487 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (602)
Q Consensus 124 ~iL~~v-s~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (602)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |++++.... ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 346665 6899999999999999999999999999987 4321 01267 777775321 11234444444333222 2
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEE
Q 007487 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-------MRPHVLFI 271 (602)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~-------~~P~iLlL 271 (602)
+.||+.+. + .--|++|+|++.++++++ .+|++||+
T Consensus 196 v~~ni~~~-----------------------------~---------~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 196 VLKHIYVA-----------------------------R---------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HGGGEEEE-----------------------------E---------CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HhhCEEEE-----------------------------e---------cCChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 22222110 0 001456677777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 007487 272 DEPLYHLDSVS------------ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (602)
Q Consensus 272 DEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (602)
||||++||+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999852 4667777777774 5899999877653 4444555666677777665544
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=1.3e-18 Score=196.59 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=112.9
Q ss_pred eEEEEeEEEEEecccccccceeece----------eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~-~~~~~G~I~i~ 173 (602)
.++++||+..|..+ .+++|+.+ ++.++. +||+|||||||||||++|+|+..| + +|.|+++
T Consensus 10 ~i~~~~l~~~~~~~---~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEK---VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRC 80 (608)
T ss_dssp ----------CHHH---HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHH---HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEc
Confidence 46888999888532 12233333 244433 999999999999999999999877 4 4999999
Q ss_pred CEeC--------CCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCC
Q 007487 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (602)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~ 245 (602)
|.+. ...++.++|++|+..+++.+||+||+.+........ +
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~--------------- 129 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------G--------------- 129 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------S---------------
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------c---------------
Confidence 9763 122357899999999999999999997643211000 0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCCh------HHH
Q 007487 246 KGLPCGERRRVRIARELVMRPHVLFIDEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEV 311 (602)
Q Consensus 246 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEP------tsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~------~~i 311 (602)
.++| ++++.++.+...+|+++|+||| |+|||+..+..+.++++++.++ +.++++++|+.. ..+
T Consensus 130 ~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 130 MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 0111 1112222233458999999999 9999999999999999997533 455666665542 112
Q ss_pred Hhc-----CCEEEEEeCCeEEEEeCchhHHhh
Q 007487 312 FGL-----FDRICLLSNGNTLFFGETLACLQH 338 (602)
Q Consensus 312 ~~~-----~D~v~vL~~G~iv~~G~~~~~~~~ 338 (602)
... ...|+|+.++..+..|+.+++.+.
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 221 346888999888877776555443
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=1.1e-16 Score=169.41 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=87.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (602)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+..... ...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 667899999999999999999999999987642 266654333322111 11122322211100
Q ss_pred CCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007487 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (602)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L 290 (602)
.++-.+ +||++|..+|++|++|||| |..+ .+.+
T Consensus 182 ------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 182 ------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 122222 8999999999999999999 6555 4444
Q ss_pred HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 007487 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (602)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (602)
.++++.|.+|++|+|..+ .+ ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 555678999999988875 34 789999988654
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.61 E-value=2e-18 Score=166.96 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (602)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.+||++|+. ... ++++. .+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---cccc-
Confidence 78999999999999999999999987 54 8 888886532 2345789999874 111 11110 0000
Q ss_pred CchhhHHHHHHHHHHHcCCchh-hhhhhcCCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 007487 213 GFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALL 285 (602)
Q Consensus 213 ~~~~~~~~~v~~~l~~l~L~~~-~~~~ig~~~~~~~LSGGqrqRv-~IA~---aL~~~P~iLlLDE--PtsgLD~~~~~~ 285 (602)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|+|||+|| |+..+|......
T Consensus 67 -----------------~~~~~~~~~~v~--~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVG--QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCSSSCCEESS--SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------cCCccccccccc--eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 00100 011221 23457999999988 4454 6789999999999 898999875544
Q ss_pred HHHHHHHHHHcCCEEEE---EE-eCChHHHHhcCCEEEEEeCCeEEEEe
Q 007487 286 MMVTLKKLASTGCTLLF---TI-NQSSTEVFGLFDRICLLSNGNTLFFG 330 (602)
Q Consensus 286 i~~~L~~l~~~g~tvi~---t~-h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (602)
+ +++.+...++|+ ++ |+.. ..+.|+|..+.+|+++...
T Consensus 128 l----~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 V----RQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp H----HHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred H----HHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4 444444445553 23 5432 3567888888889987754
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=1.3e-17 Score=161.62 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=97.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCCC
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEMP 180 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~-----~~~~~~~G~I~i~G~~~~~~ 180 (602)
++++|+++.|. ..++++ +.+.+|+.++|+|+||||||||++.|+|.. .++ .|.+.+.+.-.. .
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~~-~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFEV-A 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEE-E
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEEe-c
Confidence 68899999884 247777 888999999999999999999999999987 443 365543221000 0
Q ss_pred CceEEEEcCCCcc----CCCCC---HHHHHHHHHHh-cCC----------CchhhHHHHHHHHHHHcCCchh-hhhhhcC
Q 007487 181 YGSYGFVERETTL----IGSLT---VREYLYYSALL-QLP----------GFFCQRKNVVEDAIHAMSLSDY-ANKLIGG 241 (602)
Q Consensus 181 ~~~~~yv~Q~~~l----~~~lT---V~E~l~~~~~~-~~~----------~~~~~~~~~v~~~l~~l~L~~~-~~~~ig~ 241 (602)
...-++ +.+.+ .+.-. .+..+...... ... ......+..+.++++..++... ...++
T Consensus 72 -~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~-- 147 (210)
T 1pui_A 72 -DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA-- 147 (210)
T ss_dssp -TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG--
T ss_pred -CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc--
Confidence 001111 11111 00000 11122111110 000 0001122345566666666532 12322
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 007487 242 HCYMKGLPCGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (602)
Q Consensus 242 ~~~~~~LSGGqrqR-v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv 300 (602)
..+|+||||| +.++++++.+|+++++|||||++|.....++++.|.++.++|.|.
T Consensus 148 ----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~~ 203 (210)
T 1pui_A 148 ----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPV 203 (210)
T ss_dssp ----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred ----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccch
Confidence 3789999999 899999999999999999999999999999999999987666543
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=3e-17 Score=176.95 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=96.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (602)
.+.++||++.| +.+.+++|+++.| +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 47889998877 3457999999997 99999999999999999999764321 1222222211 1112457
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 007487 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (602)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~ 264 (602)
++++|++.+++.+||.||+.++.... . .. ....+.+ ..+. .++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~--~--~~---~~~~i~~------~i~~---------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD--N--SN---CWQPVID------YIDS---------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC------------------CHHHHH------HHHH---------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc--c--hh---hHHHHHH------HHHH---------HHHHHHHHHHHHHHHhcc
Confidence 89999988888899999987653211 0 00 0111111 1122 355677889999999999
Q ss_pred CCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 007487 265 RPH---VLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (602)
Q Consensus 265 ~P~---iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (602)
+|+ +|++|||| .+||+... +.++.+.. +.++|+++|+.
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999 99999999 69998873 44555543 67788878775
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.59 E-value=3e-15 Score=146.02 Aligned_cols=152 Identities=17% Similarity=0.117 Sum_probs=98.7
Q ss_pred ceeecee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 007487 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 124 ~iL~~vs-~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+++ ..+..+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i---------------~~~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYV---------------DTEGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEE---------------ESSCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEE---------------ECCCCC----CHH-H
Confidence 4566666 4789999999999999999999999999 322 122333 222211 111 1
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCc--hhhhhhhcCCCCCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYH 277 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~ig~~~~~~~LSGGq--rqRv~IA~aL~~~-P~iLlLDEPtsg 277 (602)
+. +..+.+++. +..+.. .+..+++++ +++++.+++++.+ |+++++||||++
T Consensus 62 ~~-------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LV-------------------QMAETRGLNPEEALSRF-----ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HH-------------------HHHHTTTCCHHHHHHHE-----EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HH-------------------HHHHhcCCChHHHhhcE-----EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11 011111111 111111 112455553 6788889999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHH-cCCEEEEEEeCCh------------HHHHhcCCEEEEEeCC
Q 007487 278 LDSV--------SALLMMVTLKKLAS-TGCTLLFTINQSS------------TEVFGLFDRICLLSNG 324 (602)
Q Consensus 278 LD~~--------~~~~i~~~L~~l~~-~g~tvi~t~h~~~------------~~i~~~~D~v~vL~~G 324 (602)
+|+. ...++++.|+++++ .|.|+|+++|... ..+.+.||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 33556777888875 4899998777643 1467899999999754
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.56 E-value=5.4e-15 Score=140.74 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 007487 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (602)
Q Consensus 244 ~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (602)
.+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.++ .++|+++|++ .+...||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence 456899999999999999975 46999999999999999999999999998754 5677767774 4678999998
Q ss_pred EEe--CCe
Q 007487 320 LLS--NGN 325 (602)
Q Consensus 320 vL~--~G~ 325 (602)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 554
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.53 E-value=2.3e-17 Score=158.01 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=94.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (602)
+++|++++|+||||||||||+++|+|+ ++ .|.|.++|.+.. .....++|++|+.. +..||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 33 399999986521 11123567777543 357888988764422
Q ss_pred cCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007487 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (602)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~ 289 (602)
..... ....++.+++.+++...... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.
T Consensus 79 ~~~~~---~~~~~~~~~~~~~l~~~~~~----~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 79 YAKEG---YFVILDGVVRPDWLPAFTAL----ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHHTS---CEEEECSCCCTTTTHHHHTT----CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred HhccC---CeEEEeccCcHHHHHHHHhc----CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 10000 00001111112233322210 1123479999999999999999999876 688888777777
Q ss_pred HHHHHHcCCEEEE
Q 007487 290 LKKLASTGCTLLF 302 (602)
Q Consensus 290 L~~l~~~g~tvi~ 302 (602)
++.+...+..+|.
T Consensus 144 ~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 144 FADLGAFEHHVLP 156 (191)
T ss_dssp TTCCGGGGGGEEE
T ss_pred HhccCcccccEEE
Confidence 7665433333443
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.53 E-value=5.5e-19 Score=169.54 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=111.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCch
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (602)
|++++|+||||||||||+++|++ +. .|.+.++|.+.... ...++++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ- 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcC-
Confidence 68999999999999999999998 22 38899988653211 124566665544455678888765432210000
Q ss_pred hhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 007487 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMM 287 (602)
Q Consensus 216 ~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~L--SGGqrqRv~IA~------aL~~~P~iLlLDEPtsgLD~~~~~~i~ 287 (602)
...+++.+......+. + +.+ |+|++|++.++. +++.+|+...+|+ +||+..... .
T Consensus 74 ------~~~ild~~~~~~~~~~-~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 74 ------NDVVLDYIAFPDEAEA-L------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp ------CEEEEESCCCHHHHHH-H------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred ------CcEEEeeccCHHHHHH-H------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 0001111111111111 1 134 888888988888 9999999888884 899988888 8
Q ss_pred HHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhH
Q 007487 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (602)
Q Consensus 288 ~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (602)
+.++.+.+.+.++|.++|...+++.+.||+|+ ++|+++..|+++-+
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888876678899877772357888999998 99999999987543
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.52 E-value=2.3e-16 Score=155.95 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=97.1
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceEEEEcCCCccCCCCCH----HHHHHH
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTV----REYLYY 205 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~E~l~~ 205 (602)
-..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++... ....++|++|++..|+.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 345689999999999999999999999998863 256999998865432 23457899887665544443 222111
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007487 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (602)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (602)
. + . ..+.+ +++ +..++..++++||| ||+..+.+
T Consensus 90 ~---------------------------------~-~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 90 F---------------------------------G-N--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T---------------------------------T-E--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred H---------------------------------h-c--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 0 0 00111 121 34455668999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCchhHHhhh
Q 007487 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (602)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (602)
+.+.+. ++.||++++|+. +++.+ |+ +.+| .++++++...+
T Consensus 123 i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 999876 588999987775 34443 32 6677 46666665544
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.49 E-value=5e-17 Score=162.85 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~---Gl~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (602)
++++++|+||||||||||+++|+ |+..++ .|+|.++|.+.... ...+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 998775 48888776542111 112445567777888889999997643210
Q ss_pred ------CCCchhhHHHHHHHHHH--HcC------------CchhhhhhhcCCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 007487 211 ------LPGFFCQRKNVVEDAIH--AMS------------LSDYANKLIGGHCYMKGLPCGERRRVRIAREL-VMRPHVL 269 (602)
Q Consensus 211 ------~~~~~~~~~~~v~~~l~--~l~------------L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL-~~~P~iL 269 (602)
.... ......++.+.+ .++ +....++ .+..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~-~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r------~~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGF-PRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR------WIHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESC-CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE------EEETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECC-CCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC------CCcCCCC----Cc---cccccCCCccc
Confidence 0000 011122222221 122 2222333 3458999 66 778 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 007487 270 FID----EPLYHLDSVSALLMMVTLKKLASTG 297 (602)
Q Consensus 270 lLD----EPtsgLD~~~~~~i~~~L~~l~~~g 297 (602)
+|| |||++||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987654
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.49 E-value=1.7e-17 Score=176.14 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=101.3
Q ss_pred eeeceeeEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 007487 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 125 iL~~vs~~i~~--Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++.. ...|+|.+++... ..+..++.... +
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----------~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----------GDEQAMQYSDY-P 224 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----------SCTTSSCTTTH-H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----------CCcccCChhHH-H
Confidence 45779999999 99999999999999999999999998751 0015554432100 00001111122 3
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcC--CchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC
Q 007487 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMS--LSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPHVLFIDE---PL 275 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~l~--L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~-~~P~iLlLDE---Pt 275 (602)
++.+... ........+.+.+. ..+..++.+ ..+|+|++||..+++++. .+|+++|||| |+
T Consensus 225 ~I~~~~q--------~~~~~~~t~~~nl~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 225 QMALGHQ--------RYIDYAVRHSHKIAFIDTDFITTQA------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHHHHH--------HHHHHHHHHCSSEEEESSCHHHHHH------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHHHHH--------HHHHHHHhccCCEEEEeCCchHHHH------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 3433210 00000000001110 011222222 256778888888888875 5999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe
Q 007487 276 ------YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (602)
Q Consensus 276 ------sgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (602)
.++|+..+..+.+.|+++.+ .|.++++++| +. +..+++|++.+++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde-~~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES-PS-YLDRYNQVKAVIE 342 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEEC-SS-HHHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC-CC-HHHHHHHHHHHHH
Confidence 58999999999999999864 4888888665 42 5566777766654
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.46 E-value=1.1e-14 Score=154.32 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=99.1
Q ss_pred eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCceEEEEc-CCCccCCCCCHH
Q 007487 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (602)
Q Consensus 125 iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (602)
+++++|+.+++|++++|+||||||||||+++|+|+++++. |.|.++|... .. ..+.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999874 9999998531 11 234577777 44321
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 007487 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (602)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~ 280 (602)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222355666777777899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 007487 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (602)
Q Consensus 281 ~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (602)
.++.+.|+.+.....|++.++|..+ +...+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777655567888888864 677899998887663
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.7e-15 Score=162.96 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=114.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~ 182 (602)
.+++++ ++.|. ..+ |+++|+.+++|++ ++|+||||||||||+|+|+|+.-. |.... ........+
T Consensus 16 ~l~~~~-~~~y~-----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~~-~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFD-----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPAT-HTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEE
T ss_pred eEEEee-EEEEC-----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcCC-CCCccceEe
Confidence 345555 55552 234 9999999999999 999999999999999999998421 32111 101111124
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCch------hhHHHHHHHHHHHc-CCch----hhhhhhc-----CCCCCC
Q 007487 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFF------CQRKNVVEDAIHAM-SLSD----YANKLIG-----GHCYMK 246 (602)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~------~~~~~~v~~~l~~l-~L~~----~~~~~ig-----~~~~~~ 246 (602)
.++|++|++.+++.+||.||+.++... .... .......++.++.. ++.. ..+..+. -.+..+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~--~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQI--NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-C--CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 689999999888889999998654211 0000 01223445555554 4321 1121110 001124
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEeC
Q 007487 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQ 306 (602)
Q Consensus 247 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~ 306 (602)
+|+-.+ +.|+++|..+.+||++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 677666 7899999999999999999999999999999999986 87889888876543
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.44 E-value=1e-14 Score=155.21 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=93.3
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCHHHH
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
.+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+.... ...++|++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeee-----------
Confidence 3566665 78999999999999999999999999987641 39997766544321 23455666531
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 282 (602)
+|++ +..+ +.+|+++|..+|++|++|||+ |..+
T Consensus 191 --------------------------~g~~------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 --------------------------VGED------------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp --------------------------BTTT------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------cCCC------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1211 1134 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 007487 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (602)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (602)
... .++. +..|.+++.|+|.. .+...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 443 3443 35688998877775 3677888887664
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.44 E-value=7.4e-17 Score=168.26 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCCC--------------------ceEEEE-
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMPY--------------------GSYGFV- 187 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~--------~~~~~~~G~I~i~G~~~~~~~--------------------~~~~yv- 187 (602)
++++|+|+||||||||+|.|+|.. .++ .|+|.++|.+..... +.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 499999997643210 124444
Q ss_pred --cCCCccCCCCCHHHHHHHHH--Hh--cC-CCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 007487 188 --ERETTLIGSLTVREYLYYSA--LL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (602)
Q Consensus 188 --~Q~~~l~~~lTV~E~l~~~~--~~--~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~ 260 (602)
+|+..+++..+|.||..++. .+ .. .........+++.++..+++.+..++.. ++|+||+||+..++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-------~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-------QFTIAQSQVGYADR 154 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-------HCHHHHHHHHTCSE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-------hchHHHHHHHhCCE
Confidence 45554445556666553210 00 00 0000000001122333445555555432 68999999999989
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 007487 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (602)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (602)
+++.+|+++ ||| ..+.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999999987 998 77888888875 5889999888764 3334443
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.44 E-value=7e-15 Score=160.23 Aligned_cols=179 Identities=11% Similarity=0.071 Sum_probs=115.2
Q ss_pred eeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCCccC
Q 007487 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (602)
Q Consensus 126 L~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (602)
-+++|+.+.+|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999988764 999998765321 123589999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCC-CEEEEe
Q 007487 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRP-HVLFID 272 (602)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~-~~P-~iLlLD 272 (602)
+.+||++++.++...... . -+++..|+.+....+. .+| +|++.+++++. ..| ++||..
T Consensus 360 p~~tV~e~l~~a~~~~~D-v---------VLIDTaGrl~~~~~lm------~EL----~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID-V---------LIADTAGRLQNKSHLM------EEL----KKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS-E---------EEECCCCSCCCHHHHH------HHH----HHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC-E---------EEEeCCCccchhhhHH------HHH----HHHHHHHHHhccCCCCeeEEEe
Confidence 889999999876431110 0 0123333322211111 123 47888888764 457 466555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeCchhH
Q 007487 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLAC 335 (602)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~~ 335 (602)
.+|+|.|.. +.++.+.+ -|.|.++.+|-+ ......+.+-++. +..|.|.|..+.+
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKLD--~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKLD--GTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECGG--GCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcCC--CcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 588886554 34555553 477888877754 2222222222222 3456666665544
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.43 E-value=9.1e-13 Score=130.29 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=86.2
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCC--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~G--l~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (602)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+++++.. .+ ...+.....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 5688999999999999999999999999 454410 012556665432 11 111111010
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH--
Q 007487 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV-- 281 (602)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqR-v~IA~aL~--~~P~iLlLDEPtsgLD~~-- 281 (602)
..+... .+++++.+. .....++.+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g~~---------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 80 ERYGLS---------GSDVLDNVA-------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp HHTTCC---------HHHHHHTEE-------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred HHcCCC---------HHHHhhCeE-------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 011100 001111110 112355555433 33333444 489999999999999985
Q ss_pred -----H-----HHHHHHHHHHHHH-cCCEEEEEEeCChHHH-------------------HhcCCEEEEEeCC
Q 007487 282 -----S-----ALLMMVTLKKLAS-TGCTLLFTINQSSTEV-------------------FGLFDRICLLSNG 324 (602)
Q Consensus 282 -----~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i-------------------~~~~D~v~vL~~G 324 (602)
. ...+++.|+++++ .|+|||+++|... +. ..+||.+++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456667777764 4999999776432 22 2379999999865
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.42 E-value=2.8e-14 Score=149.28 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=98.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------C--ceEEEEcCCCccCCCCCHHHH
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------Y--GSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---------~--~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
++|++++|+||||||||||++.|+|++++.+ |+|.+.|.+.... . ..+.+++|+..++|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999998875 9999999875321 1 135699999999999999999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 282 (602)
+.++....... -+++..|+.+..+..+ .+|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~~~l~------~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETNRNLM------DEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTTTCHH------HHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHHhccchh----------hHHhhccchhHHHHHH------HHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 97653211100 0122233332222222 1343 38899988888888885553
Q ss_pred HHHHHHHHHHHH-HcCCEEEEEEeCC
Q 007487 283 ALLMMVTLKKLA-STGCTLLFTINQS 307 (602)
Q Consensus 283 ~~~i~~~L~~l~-~~g~tvi~t~h~~ 307 (602)
.++++.++.+. ..+.|+|+++|.+
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 35666677776 4588888888865
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=5.6e-14 Score=148.17 Aligned_cols=138 Identities=19% Similarity=0.124 Sum_probs=93.5
Q ss_pred eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCceEEEEcCCCccCCCCCHHH
Q 007487 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 125 iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
-+++++.. .+|++++|+||||||||||+|+|+|+.+ +.. |+|.++ |+... .....+++++|+..+++..+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35566654 4899999999999999999999999988 764 999987 65432 23356899999998998889988
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 007487 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (602)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (602)
+. +. .....+..+.+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.
T Consensus 281 ~~-----l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~------~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 281 FG-----LW-HLEPEQITQGFVEFHDYLGHCKYRDCK------HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp CC-----CC-CCCHHHHHHTSGGGGGGTTCSSSTTCC------SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred hh-----hc-CCCHHHHHHHHHHHHHHcCCchhcCCC------cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 42 11 111123345677888889988777654 45999 999999999864 3444
Q ss_pred HHHHHHHHHHHHH
Q 007487 282 SALLMMVTLKKLA 294 (602)
Q Consensus 282 ~~~~i~~~L~~l~ 294 (602)
-.....++++++.
T Consensus 333 R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 333 RFENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4445556666654
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.40 E-value=6.5e-15 Score=138.13 Aligned_cols=79 Identities=19% Similarity=0.091 Sum_probs=64.7
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
.+.+++++|+++++|++++|+||||||||||+|+|+|++ |.. |+|.++|.+....+....+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 346899999999999999999999999999999999999 654 999999975421111112789988888 899999
Q ss_pred HHHH
Q 007487 202 YLYY 205 (602)
Q Consensus 202 ~l~~ 205 (602)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=9.2e-15 Score=138.97 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=42.8
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 007487 263 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (602)
Q Consensus 263 ~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (602)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|+++|++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999996 9999999999999999888899999999988643
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.36 E-value=1.2e-12 Score=139.21 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=66.7
Q ss_pred CCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 007487 244 YMKGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (602)
Q Consensus 244 ~~~~LSGGqrqRv------~IA~aL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (602)
.+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++...||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCC
Confidence 3468999999988 567899999 999999999999999999999999999753 46899988886 3678999
Q ss_pred EEEEEe
Q 007487 317 RICLLS 322 (602)
Q Consensus 317 ~v~vL~ 322 (602)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=8.4e-15 Score=157.78 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=96.8
Q ss_pred eeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCC----------ccCC
Q 007487 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET----------TLIG 195 (602)
Q Consensus 126 L~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~----------~l~~ 195 (602)
-++++++++.|+.++|+|+|||||||||++|+|..+. +.+.+.......++++.+++ .+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4789999999999999999999999999999998431 22222111112234444332 2221
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 007487 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (602)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPt 275 (602)
. ..++. .+........++++.++..+++. +. .+.+||+|++||+.+|++|+.+|.||++
T Consensus 218 ~--a~~~~------~L~~~fl~~~era~~lL~vvDls---~~------~~~~ls~g~~el~~la~aL~~~P~ILVl---- 276 (416)
T 1udx_A 218 G--ASEGK------GLGLEFLRHIARTRVLLYVLDAA---DE------PLKTLETLRKEVGAYDPALLRRPSLVAL---- 276 (416)
T ss_dssp C--GGGSC------CSCHHHHHHHTSSSEEEEEEETT---SC------HHHHHHHHHHHHHHHCHHHHHSCEEEEE----
T ss_pred c--hhhhh------hhhHHHHHHHHHHHhhhEEeCCc---cC------CHHHHHHHHHHHHHHhHHhhcCCEEEEE----
Confidence 1 00000 00000000001112222333332 22 2347999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCChHHHHhcCCEE
Q 007487 276 YHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRI 318 (602)
Q Consensus 276 sgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v 318 (602)
+.+|...+ ..++.+++. .+.|.+++.++.+....+.++++.+
T Consensus 277 NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 277 NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999877 445555444 4557788776655545555555544
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.36 E-value=4e-15 Score=141.37 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-------C-ceEE----EEcCCCccCCCCCHHHHH
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-------Y-GSYG----FVERETTLIGSLTVREYL 203 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~-~~~-------~-~~~~----yv~Q~~~l~~~lTV~E~l 203 (602)
++++|+|+||||||||+++|+|++++.+...|.|.++|.+. ... + +.++ +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999999887633359999999762 111 1 2355 788877655 110
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHH-cCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCC
Q 007487 204 YYSALLQLPGFFCQRKNVVEDAIHA-MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL-------FIDEPL 275 (602)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iL-------lLDEPt 275 (602)
.. .+....++++++. +. -.|+.++ .+||||||||++|||+++.+|++. .-|.|.
T Consensus 77 --------~~--~~~~a~l~~~i~~~l~---g~dt~i~-----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 --------VS--EEEGNDLDWIYERYLS---DYDLVIT-----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp --------CC--HHHHTCHHHHHHHHTT---TCSEEEE-----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred --------CC--hhhhhCHHHHHHhhCC---CCCEEEE-----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 00 0001124445544 32 1355554 259999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCC
Q 007487 276 YH---LDSVSALLMMVTLKKLASTGC 298 (602)
Q Consensus 276 sg---LD~~~~~~i~~~L~~l~~~g~ 298 (602)
.+ +|......+.+.+.+...+|.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccCcccHHHHHHHHHHHHhccC
Confidence 22 345556788888877666654
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=1.5e-13 Score=142.27 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=82.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC-----ceEEEEcCCCccC-----CCCCHH
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY-----GSYGFVERETTLI-----GSLTVR 200 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i---~G~~~~~~~-----~~~~yv~Q~~~l~-----~~lTV~ 200 (602)
.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|+...... ..+||++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 479999999999999999999999 888764 99999 887643211 2479999998653 68899
Q ss_pred HHH--HHH------HHhcCCCchhhHHHHHHHHHHHcCCch-hhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 007487 201 EYL--YYS------ALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (602)
Q Consensus 201 E~l--~~~------~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ig~~~~~~~LSGGqrqRv~IA~a 261 (602)
|++ .|+ +..+......+...+++++++.++|.+ ..++.+. .|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~------~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK------IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH------HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 887 443 112210111233456899999999986 6777554 899999999999873
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=8.4e-13 Score=122.42 Aligned_cols=95 Identities=19% Similarity=0.362 Sum_probs=70.8
Q ss_pred eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 007487 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 125 iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
+|+++ +|+.++|+||||+|||||+++|+|...+. | .+.+++. +... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~---------------~~~~-~------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAA---------------SMPL-T------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETT---------------TSCC-C------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHH---------------HhhH-H------
Confidence 45555 89999999999999999999999987653 4 3444332 1100 0
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 282 (602)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHcCCE-EEEEEeCChH
Q 007487 283 ALLMMVTLKKLASTGCT-LLFTINQSST 309 (602)
Q Consensus 283 ~~~i~~~L~~l~~~g~t-vi~t~h~~~~ 309 (602)
+..+.++++++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 89999999999888887 8887775543
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=6.9e-15 Score=154.60 Aligned_cols=174 Identities=12% Similarity=0.037 Sum_probs=112.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------
Q 007487 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------- 178 (602)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~------- 178 (602)
++.+|+++.|. .+.+|+++|+.+.+|++++|+|+||||||||+++|+|++++.+ |+|.+.|.+..
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 45666665542 3468999999999999999999999999999999999988764 99999987642
Q ss_pred --CCCceEEEEcCCCccCCCC------------CHHHHHHHHHHhcC-------CCch---------------------h
Q 007487 179 --MPYGSYGFVERETTLIGSL------------TVREYLYYSALLQL-------PGFF---------------------C 216 (602)
Q Consensus 179 --~~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~~~~~~-------~~~~---------------------~ 216 (602)
..+..+++++|++.+++.. ++.|.+........ ++.. .
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 1234689999988777532 12333211000000 0000 0
Q ss_pred hHHHHHH-HHHHHcCCchhhhhhhcCC-CCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHH
Q 007487 217 QRKNVVE-DAIHAMSLSDYANKLIGGH-CYMKGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMV 288 (602)
Q Consensus 217 ~~~~~v~-~~l~~l~L~~~~~~~ig~~-~~~~~LSGGqrqRv~IA~aL~~------~P~iLlLDEPtsgLD~~~~~~i~~ 288 (602)
+..+.+. .+.+...+- ..++. + .....+|+|++|++..|++++. +|++++ ||++|.....++++
T Consensus 182 ~~~~~i~~~i~~~~~iv-vlNK~---Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 182 DELQGIKKGIFELADMI-AVNKA---DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWS 253 (337)
T ss_dssp -----CCTTHHHHCSEE-EEECC---STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHH
T ss_pred ccHHHHHHHHhccccEE-EEEch---hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHH
Confidence 0000000 011111110 01110 1 0123589999999999999987 688887 99999999999999
Q ss_pred HHHHHHH
Q 007487 289 TLKKLAS 295 (602)
Q Consensus 289 ~L~~l~~ 295 (602)
.|.++.+
T Consensus 254 ~I~~~~~ 260 (337)
T 2qm8_A 254 RIEDHRS 260 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.33 E-value=2.2e-12 Score=139.69 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 007487 246 KGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (602)
Q Consensus 246 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (602)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|+++|++ .....||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999988874 567889999998
Q ss_pred e
Q 007487 322 S 322 (602)
Q Consensus 322 ~ 322 (602)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.31 E-value=5.2e-14 Score=144.83 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH----hc
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL----LQ 210 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~----~~ 210 (602)
++.+++|.|+||||||||++.|++++.+. | . ..+.+.+|.|++.+++. ++++|+.+... +.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999988652 3 0 12345666999988865 88899877521 11
Q ss_pred ---CCCchhhHHHHHHHHHHHcCCc--hhhhhhhcCCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 007487 211 ---LPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLYHLDSVS 282 (602)
Q Consensus 211 ---~~~~~~~~~~~v~~~l~~l~L~--~~~~~~ig~~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEPtsgLD~~~ 282 (602)
.+.. .......+.++.+.-. ......+.-..+.+.+||||+||+++| +++ +|+|||+|||+++||+..
T Consensus 95 ~~g~p~a--~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGT--HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTS--BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hccCcch--hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1221 1233455666665332 000000000234568999999999997 555 999999999999999853
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.27 E-value=2.3e-11 Score=130.39 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=92.3
Q ss_pred eeece-eeEEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCH
Q 007487 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (602)
Q Consensus 125 iL~~v-s~~i~~Ge~~aIlG~sGsGKSTLL~~--L~Gl~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (602)
-|+.+ .+-+++|++++|+||||||||||++. +.+..++.. .-.+.|+++++. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 36789999999999999999999994 456665521 011355555431 11 11
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCc--hhhhhhhcCCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCC
Q 007487 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPC-GERRRVRIARELV--MRPHVLFIDEP 274 (602)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~ig~~~~~~~LSG-GqrqRv~IA~aL~--~~P~iLlLDEP 274 (602)
. ++.+..+.+|+. ...+... .....++ .+.+.+..+.+++ .+|+++++|||
T Consensus 227 ~--------------------rl~~~a~~~gl~~~~vleni~----~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 227 V--------------------RLVSIAQRFGLDPDDALNNVA----YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp H--------------------HHHHHHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred H--------------------HHHHHHHHcCCChHhHhhcEE----EeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 0 111122223332 1111110 1112222 2233444444443 46999999999
Q ss_pred CCCCCHHHH------------HHHHHHHHHHHH-cCCEEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 007487 275 LYHLDSVSA------------LLMMVTLKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (602)
Q Consensus 275 tsgLD~~~~------------~~i~~~L~~l~~-~g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (602)
++.+|.... .++++.|+++++ .|.|||+++|... ..+.+.+|.++.|++
T Consensus 283 t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 283 MALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp GGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred hhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 999996543 678889999985 5999999888711 224677899999987
Q ss_pred Ce
Q 007487 324 GN 325 (602)
Q Consensus 324 G~ 325 (602)
|+
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.26 E-value=3.7e-14 Score=152.96 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=90.8
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEE-------
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFV------- 187 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv------- 187 (602)
.+|+++ + .++|++++|+|||||||||||++|+|++++.. |+|.+.|.+.+.. ...+++.
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367777 4 37899999999999999999999999988764 9999988764321 1123443
Q ss_pred --cCCCcc--CCC----CCHHHHHHHHHHhcC--CC-chhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHH
Q 007487 188 --ERETTL--IGS----LTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (602)
Q Consensus 188 --~Q~~~l--~~~----lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv 256 (602)
.|++.+ ++. .|+.+++.++..-+. .. ......+ +.+.+..+++.+.. .+. .|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~------~LSgg~~QR- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISS------SLLGVLAQR- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHH------HEEEEEEEE-
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHH------HHHHHHHHH-
Confidence 377654 344 588888876542110 00 0011122 33357778887653 333 899999999
Q ss_pred HHHHHHhhCCCEEEE
Q 007487 257 RIARELVMRPHVLFI 271 (602)
Q Consensus 257 ~IA~aL~~~P~iLlL 271 (602)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=5.3e-12 Score=132.29 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=73.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCC---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 007487 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMP---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~G-l~~~~~~~~G~I~i~G~~~~~~---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (602)
+.|.||||+|||||+++|+| +..++. |++.++|.+.... ...+++++|.+.+.-..+ +. .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~-~- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM-------GN-N- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC--------------C-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHh--hc-------CC-c-
Confidence 89999999999999999999 677664 9999988653211 245777887664421111 00 00 0
Q ss_pred hhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007487 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (602)
Q Consensus 215 ~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~ 294 (602)
. ...+++.++.+......+. .. .||| +..+|+++|+|||++ ||..++..+++.|.+..
T Consensus 105 --~-~~~~~~~i~~~~~~~~~~~------~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 --D-RIVIQELLKEVAQMEQVDF------QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --C-HHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred --c-hHHHHHHHHHHHHhccccc------cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1 0123333333321110111 00 3566 788999999999999 99999999999998864
Q ss_pred HcCCEEEEEEeCCh
Q 007487 295 STGCTLLFTINQSS 308 (602)
Q Consensus 295 ~~g~tvi~t~h~~~ 308 (602)
.+.++|+++|++.
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4678888888874
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.21 E-value=2e-14 Score=140.23 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=67.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (602)
.++|++++|+||||||||||+++|+|++++. | ..++++++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4589999999999999999999999998753 2 124455554443321 122221000000011
Q ss_pred CchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 007487 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA-RELVMRPHVLFIDEPL 275 (602)
Q Consensus 213 ~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA-~aL~~~P~iLlLDEPt 275 (602)
. ........+.+..+...+..+... .+...++|+||+||+++| ++++.++.++++|||.
T Consensus 81 ~--~~~~~~~~~~l~~l~~~~~i~~p~--~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 81 E--TFDFEGFQRLCHALKHQERVIYPL--FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp G--GBCHHHHHHHHHHHHHCSCEEEEE--EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred c--hhhHHHHHHHHHHHhcCCceeccc--CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0 001122223333321111111111 112336899999999998 7888888888888874
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.21 E-value=5.5e-15 Score=163.39 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=104.2
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CceEEEEcCCCc--------
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERETT-------- 192 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~~-------- 192 (602)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+. |.|.++|.. .... ...+.++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998874 999998864 2221 223455554322
Q ss_pred --------------cCCCCCHHHHHHHHHHhcCCCch-h-hHHHHHHHHHHHcCC-----chh-hhhhhcCCCCCCCCCH
Q 007487 193 --------------LIGSLTVREYLYYSALLQLPGFF-C-QRKNVVEDAIHAMSL-----SDY-ANKLIGGHCYMKGLPC 250 (602)
Q Consensus 193 --------------l~~~lTV~E~l~~~~~~~~~~~~-~-~~~~~v~~~l~~l~L-----~~~-~~~~ig~~~~~~~LSG 250 (602)
++..++..|++.+.......... . -....+.++++.+.. ... ....-........+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 22344555544332222111000 0 000112333333322 111 1100000012235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EEeCChHHHHhcC
Q 007487 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 315 (602)
Q Consensus 251 GqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~--t~h~~~~~i~~~~ 315 (602)
||+||+++|. + | |+|||+.....+++.|.++.++|.|+++ ++|.. +++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 9999987651 2 7 9999998777777777776666777764 45543 4555544
No 143
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=2.2e-12 Score=133.37 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=70.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CceEEEEcCCCc------------
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT------------ 192 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~------------ 192 (602)
+.+|++++|+||||||||||+|+|+|+.+|.. |+|.+ +|+..... .+.++|++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 44799999999999999999999999999874 99999 88764321 124789999874
Q ss_pred ----cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCc-hhhhhhhcCCCCCCCCCH
Q 007487 193 ----LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (602)
Q Consensus 193 ----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ig~~~~~~~LSG 250 (602)
++|.+|+ ||+.|+. .. .. .+...++.++++.++|. +..++.+. .||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~~--~e~~~~v~~~l~~~~L~~~~~~~~~~------~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-HV--DEPECGVKEAVENGEIAESRYENYVK------MFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-SS--SCSSCHHHHHHHHTSSCHHHHHHHHH------HHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-CC--CCCCcHHHHHHHcCCCCHHHHHHHHH------HHHH
Confidence 6889999 9987742 11 11 23345689999999995 77777554 6774
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.12 E-value=2.6e-14 Score=145.89 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=92.7
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCC-ccCCC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERET-TLIGS 196 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~-~l~~~ 196 (602)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998765 7899998654211 12355666653 34455
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 007487 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (602)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPts 276 (602)
+++.|++.... .. ...... + .+....++++. .|||||+||+.|++++.++|++| ||++.
T Consensus 106 i~~~Deid~~~----~~---r~~~~~----~--~~~~~~~~~l~------~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALC----PR---RSDRET----G--ASVRVVNQLLT------EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTC----C------------------CTTHHHHHHH------HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhh----cc---cCCCcc----h--HHHHHHHHHHH------hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55555553211 00 000000 0 12344555554 89999999999999999999985 88864
Q ss_pred ------------CCCHHHHHHHHHH
Q 007487 277 ------------HLDSVSALLMMVT 289 (602)
Q Consensus 277 ------------gLD~~~~~~i~~~ 289 (602)
-.|...+.+|++.
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHH
Confidence 2355566555554
No 145
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=1.4e-11 Score=127.49 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=68.0
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC---Cc-eEEEEcCCCccCC----CCCH
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP---YG-SYGFVERETTLIG----SLTV 199 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i---~G~~~~~~---~~-~~~yv~Q~~~l~~----~lTV 199 (602)
+.+.+|++++|+||||+|||||+|+|+|+.++.. |+|.+ +|+..... .+ ..+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4567899999999999999999999999988764 99998 77653221 11 1699999987765 6899
Q ss_pred HHHH--HHHHH--h----cCCC--chhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHH
Q 007487 200 REYL--YYSAL--L----QLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (602)
Q Consensus 200 ~E~l--~~~~~--~----~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqR 255 (602)
|++ .|+.. + +... ...+....++++++.++|.+....... .|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 888 34311 1 1111 112334568999999999875443322 577787763
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.09 E-value=4.1e-13 Score=140.66 Aligned_cols=148 Identities=22% Similarity=0.190 Sum_probs=95.5
Q ss_pred cceeeceeeEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeC-----CCCCceEEEEcC
Q 007487 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKS-----EMPYGSYGFVER 189 (602)
Q Consensus 123 ~~iL~~vs~~i~~G-------e~~aIlG~sGsGKSTLL~~L~Gl~~~~~-~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (602)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.+. ......+.|++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888776 8999999999999999999999863210 1246665555332 112346899999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCC---chhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 007487 190 ETTLIGSLTVREYLYYSALLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (602)
Q Consensus 190 ~~~l~~~lTV~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P 266 (602)
.+.+.+ ++.|++.......... ......+.++..++.+++.. +.+. +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~------~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR------SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC------GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC------cccCCHHHHHhcCce-------
Confidence 887765 7888885433221100 00112233444555555543 4443 348999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007487 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (602)
Q Consensus 267 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~ 295 (602)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999874
No 147
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=1.4e-13 Score=146.97 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=115.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeCC------CCCce---EEEEcCCCcc
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKSE------MPYGS---YGFVERETTL 193 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~------~---~~~~~G~I~i~G~~~~------~~~~~---~~yv~Q~~~l 193 (602)
.+++|+.++|+|+||||||||+|+|+|... | -....|.|.++|.... .+.+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 456899999999999999999999999321 0 0123699999884310 11222 3467788888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--CEE
Q 007487 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVL 269 (602)
Q Consensus 194 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P--~iL 269 (602)
.+..+..|++ .|...++.. +.++..+...+ +..+..++|+. +| +++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~----------d~il~Vvd~~~--------d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV----------DAIYQVVRAFD--------DAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC----------SEEEEEEECCC--------TTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH----------HHHHHHHhccc--------cceeeeecccc------------Ccchhhh
Confidence 8877776655 332222211 11111111111 11223466653 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCChHHHHhcCCEEE-EEeCC-eEEEEeCch
Q 007487 270 FIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 333 (602)
Q Consensus 270 lLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 333 (602)
++|||+.++|+......++.++++ .+.|.|++ +|.. ..+.++||++. +|.+| ++++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999999999999998 77777764 5654 67899999999 99999 988877654
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.06 E-value=6.6e-14 Score=135.82 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 007487 258 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (602)
Q Consensus 258 IA~-aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (602)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..++ . ...|.+ ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~---~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-M---ESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-T---TGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-H---HHhhcc-----CCceEEEECCC
Confidence 455 677888888889999999999999999999887653 1 112311 56899888753
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.02 E-value=1.2e-10 Score=120.61 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=79.4
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 007487 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (602)
Q Consensus 129 vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (602)
+++..++|++++|+|+|||||||+++.|++.+.+.+ |+|.+.+.+.. +. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~---r~--------------~a~eq------ 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTF---RA--------------AAIEQ------ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTT---CH--------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccc---cH--------------HHHHH------
Confidence 344556899999999999999999999999987654 77877664321 00 01111
Q ss_pred hcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 007487 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALL 285 (602)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv---~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (602)
+..+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. ......
T Consensus 151 -------------L~~~~~~~gl~~-----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 151 -------------LKIWGERVGATV-----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp -------------HHHHHHHHTCEE-----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred -------------HHHHHHHcCCcE-----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 223344455532 125789999999 99999999999999999974 344556
Q ss_pred HHHHHHHHH
Q 007487 286 MMVTLKKLA 294 (602)
Q Consensus 286 i~~~L~~l~ 294 (602)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.00 E-value=8.1e-10 Score=120.46 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=109.5
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (602)
...|+++.+-+.+|+++.|.|++|+|||||+..|++...+.. | .|.+ +.-+ ++..+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~--------------~s~E------~s~~~ 246 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAI--------------FSLE------MSAQQ 246 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEE--------------EESS------SCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEE--------------EECC------CCHHH
Confidence 357888888899999999999999999999999998654311 3 2332 2211 22222
Q ss_pred HHHH--HHHhcC-------CCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEE
Q 007487 202 YLYY--SALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLF 270 (602)
Q Consensus 202 ~l~~--~~~~~~-------~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLl 270 (602)
...- +..... .....+...++.+.++.++..++.-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 247 l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~------d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID------DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE------CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE------CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 1110 001111 00011222345555555543222111 12379999987 5667776 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHH-cCCEEEEEEeC-----------Ch-------HHHHhcCCEEEEEeC
Q 007487 271 IDEPLYHLD--------SVSALLMMVTLKKLAS-TGCTLLFTINQ-----------SS-------TEVFGLFDRICLLSN 323 (602)
Q Consensus 271 LDEPtsgLD--------~~~~~~i~~~L~~l~~-~g~tvi~t~h~-----------~~-------~~i~~~~D~v~vL~~ 323 (602)
+|+++...+ .....++.+.|+.+++ .|++||+++|- |. ..+.+.||.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999999774 3344778888999884 58999997771 21 146778999999987
Q ss_pred CeE
Q 007487 324 GNT 326 (602)
Q Consensus 324 G~i 326 (602)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.99 E-value=1.8e-09 Score=106.58 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.9
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHH-------HHhcCCEEEEEeC
Q 007487 264 MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGCTLLFTINQSSTE-------VFGLFDRICLLSN 323 (602)
Q Consensus 264 ~~P~iLlLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~-------i~~~~D~v~vL~~ 323 (602)
.+|+++++|+|++.+ |+....+++..|.+++ +.|+|||+++|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 6689999988876431 4578999999964
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.94 E-value=1.1e-09 Score=112.70 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=82.9
Q ss_pred eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 007487 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (602)
Q Consensus 127 ~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (602)
+++++. +|++++|+|+||+||||++..|+|.+.+.+ |+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccH----------------hHH-HHH---
Confidence 677887 899999999999999999999999987654 7888876542110 000 111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHH
Q 007487 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALL 285 (602)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP-tsgLD~~~~~~ 285 (602)
..+.+..++.-.... .+-.-.+.+|.+|+++...+++++|+||| +.++|.....+
T Consensus 146 ----------------~~~~~~~~l~~~~~~--------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEVM--------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp ----------------HHHHHHHTCCEEECC--------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred ----------------HHhcccCCeEEEEcC--------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 011233344321100 02234456789999998899999999999 99999988888
Q ss_pred HHHHHHHHH
Q 007487 286 MMVTLKKLA 294 (602)
Q Consensus 286 i~~~L~~l~ 294 (602)
+.+..+.+.
T Consensus 202 l~~~~~~~~ 210 (295)
T 1ls1_A 202 LARLKEVLG 210 (295)
T ss_dssp HHHHHHHHC
T ss_pred HHHHhhhcC
Confidence 887777653
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.89 E-value=3e-11 Score=136.43 Aligned_cols=159 Identities=18% Similarity=0.107 Sum_probs=99.4
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCc---------
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (602)
...+++++++.+.+|+.++|+||||+|||||+++|+|++++.. -|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 4568899999999999999999999999999999999987752 48888887665433445788876431
Q ss_pred -------------cCCCCCHHHHHHHHHHhcCCCch-hhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHH
Q 007487 193 -------------LIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (602)
Q Consensus 193 -------------l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~I 258 (602)
.+..+++.+|+.....-..+... ..... ..-+.+|..+... ....++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~---~~~~L~G~~~~~~------~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGA---HAGALLGDVRHDP------FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTC---CHHHHHCEECCCC------C----CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCC---CHHhcCceEEech------hhcCCccccccccccC
Confidence 11111111111000000000000 00000 0111112111111 1124799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007487 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (602)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 292 (602)
++....++.+||+||... |++..+..+++.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999998 899988888888764
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.88 E-value=8e-11 Score=129.47 Aligned_cols=177 Identities=15% Similarity=0.042 Sum_probs=102.0
Q ss_pred ceeeEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCC--CHHHHH
Q 007487 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL--TVREYL 203 (602)
Q Consensus 128 ~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~G--l~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l 203 (602)
.+++.+.+|..++|.|++||||||+++.|.. +...+. |++.+.+.+.+.. . ++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 3566777899999999999999999999875 333322 6666655443210 0 0000111221 122222
Q ss_pred HHHHH-hcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEEE
Q 007487 204 YYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV----------RIARELVMRPH-VLFI 271 (602)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv----------~IA~aL~~~P~-iLlL 271 (602)
..+.. ++ ....+.++| .++++..|+.+..+..- .....+||||+||. .+|+++...|. ++++
T Consensus 230 ~~a~~~L~--~~~~EmerR-~~ll~~~Gv~~i~~yn~---~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANALR--WCVNEMERR-YKLMSALGVRNLAGYNE---KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHHH--HHHHHHHHH-HHHHHHTTCSSHHHHHH---HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHHH--HHHHHHHHH-HHHHHHcCCccHHHHHH---HHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 21111 11 011233344 36788888876543210 01125788887752 35666778898 8899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEEeCChHH-----H-HhcCCEEEE
Q 007487 272 DEPLYHLDSVSALLMMVTLKKLAST----GCTLLFTINQSSTE-----V-FGLFDRICL 320 (602)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~t~h~~~~~-----i-~~~~D~v~v 320 (602)
||++.-+|. ....+.+.|.++++. |.++|+++|.|..+ + .++.+||++
T Consensus 304 DE~~~ll~~-~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 304 DEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp ETHHHHHHH-HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred eCHHHHHhh-hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 999998884 335566666666543 77999999998622 3 344556654
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.88 E-value=2.5e-09 Score=112.65 Aligned_cols=148 Identities=23% Similarity=0.257 Sum_probs=87.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (602)
+-+++|+++.|.||+|+|||||+..++......+ | .+.|+.-+..+.+ . +.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~--------------~vlyi~~E~~~~~-------~-~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---G--------------IAAFIDAEHALDP-------E-YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---C--------------CEEEEESSCCCCH-------H-HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---C--------------eEEEEECCCCcCH-------H-HH----
Confidence 3678999999999999999999888875432211 2 2344433321110 0 01
Q ss_pred CCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------
Q 007487 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL---------- 278 (602)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPtsgL---------- 278 (602)
+.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++||+++.+
T Consensus 107 ----------------~~lG~~~-~~l~i~-----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS-----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE-----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred ----------------HHcCCCH-HHeEEe-----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 1122210 000010 01233 2345678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCEEEEEEeCChH---------------HHHhcCCEEEEEeCCeEEEEeC
Q 007487 279 DS---VSALLMMVTLKKL----ASTGCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 331 (602)
Q Consensus 279 D~---~~~~~i~~~L~~l----~~~g~tvi~t~h~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 331 (602)
|+ ..++.+.+.+++| .+.|+|||++.|.... .+..+||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2233445555555 3569999998775421 2567899999998877665554
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.83 E-value=1e-09 Score=119.95 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=46.7
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~ 177 (602)
.+|+|+|+.+++ |+++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 589999999999 9999999999999999999999999875 9999999754
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.83 E-value=1.8e-10 Score=119.37 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=74.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~--~~ 163 (602)
.++++||++.| .++++++++.+ .+|+++||+||||||||||+++|+|++. |+
T Consensus 37 ~i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 47788888766 25889999887 8999999999999999999999999877 66
Q ss_pred CCceeEEEE---CCEeCCC-CCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 007487 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALL 209 (602)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (602)
+ |+|.+ +|..... ..+.++++ |+..+++.+|+.+++.+...+
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 4 99999 8764311 12346777 777777889999999776544
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.82 E-value=4e-09 Score=108.62 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=87.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 213 (602)
.+|++++|+|+||+||||+++.|++.+.+.. | +++.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999999886532 5 23556665542 335555553311
Q ss_pred chhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007487 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (602)
Q Consensus 214 ~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 293 (602)
+..|+.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 -------------~~~gl~~~~-----------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 -------------ELLQAPLEV-----------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp -------------TTTTCCCCB-----------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred -------------HhcCCCeEe-----------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 112221100 112 2334556654 4999999999 9999987665555444433
Q ss_pred H---HcCCEEEE-EEeCChHHHHhcCCEEEEEeCCeEEEE
Q 007487 294 A---STGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFF 329 (602)
Q Consensus 294 ~---~~g~tvi~-t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (602)
. ..+.++++ ++|. ..++.+.++++..+..+.++..
T Consensus 209 ~~~~~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 2 22334444 2444 4577777887766677777763
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.73 E-value=7.1e-10 Score=106.70 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=44.4
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCceEEEEcCCCccCCCCCHHHH
Q 007487 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 130 s~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45677999999999999999999999999864 2445553321 112357888888766655555444
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.69 E-value=9e-12 Score=126.77 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=78.1
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCCc-cCCC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (602)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|... ..|.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35789999999999 99999999999999999999875 2889998754210 0 123455666532 4555
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 007487 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (602)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~i 268 (602)
+++.|++......+.... ....+...+. .+..+. .|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~-~~~~~~~~~~---------~~~ll~------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGV-GGGNDEREQT---------LNQLLV------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC---------CHHHHHH---------HHHHHH------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhccccccc-CCcchHHHHH---------HHHHHH------HHhCCCCCCCEEEEEecCCchh
Confidence 666666633211110000 0000001111 122222 6899999999999999999976
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.68 E-value=1.9e-09 Score=103.00 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007487 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (602)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 293 (602)
+.+.+|++|+.+|+++++| ||+||.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3478899999999999999 9999999999999988753
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.64 E-value=1.4e-11 Score=123.33 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=78.3
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCC-ccCCC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERET-TLIGS 196 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~-~l~~~ 196 (602)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|.. ...|.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35789999999999 99999999999999999999875 2889988754210 0 12344555543 23455
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007487 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (602)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 274 (602)
+++.|++......+.... ....+...+ ..+..+. .|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~-~~~~~~~~~---------~~~~ll~------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGV-GGGNDEREQ---------TLNQLLV------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC----------CHHHHH---------HHHHHHH------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccc-cccchHHHH---------HHHHHHH------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 566666632211110000 000000111 1122222 6899999999999999999986 4543
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.54 E-value=2.5e-08 Score=105.10 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=28.4
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+-+++|+++.|.||+|||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36789999999999999999999999987544
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.52 E-value=2.2e-08 Score=98.69 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~-Gl~~~ 162 (602)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35688999999999999999999999999999999 99754
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.46 E-value=5.1e-09 Score=103.67 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=40.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~ 177 (602)
.|+++|+...+. . ++.+.+ ++++|+|||||||||||++|+|++.|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~----------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE----------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC----------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 477787764431 0 345556 8999999999999999999999998875 9999998754
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.44 E-value=2.3e-07 Score=101.45 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEEeCC
Q 007487 250 CGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----STGCTLLFTINQS 307 (602)
Q Consensus 250 GGqrqRv~IA~aL~~~P~iLlLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tvi~t~h~~ 307 (602)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.++|++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5778888899999999999999999 34677777777777777663 3466778877776
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=8.9e-08 Score=91.62 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007487 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (602)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~ 294 (602)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887654
No 168
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.40 E-value=4e-07 Score=95.21 Aligned_cols=127 Identities=12% Similarity=0.174 Sum_probs=83.2
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (602)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++...... | ..+.|+.- .++..+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~----------g-------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND----------D-------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT----------T-------CEEEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----------C-------CeEEEEeC------CCCHHHHH
Confidence 3566666678899999999999999999998887643211 1 12333221 23443322
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 007487 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (602)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (602)
.++......+.+.++.+ | .||.++.+|+..|...+.+++++|.|+|... .
T Consensus 91 ----------------~Rlls~~~~v~~~~l~~---g------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 91 ----------------LRALSDLTSINMHDLES---G------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ----------------HHHHHHHHCCCHHHHHH---T------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ----------------HHHHHHhhCCCHHHHhc---C------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 11222222233333322 2 7999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHHc--CCEEEEE
Q 007487 284 LLMMVTLKKLAST--GCTLLFT 303 (602)
Q Consensus 284 ~~i~~~L~~l~~~--g~tvi~t 303 (602)
.+|...++++.++ |..+|++
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 3677777777644 5667664
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.36 E-value=1.9e-08 Score=106.45 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=83.6
Q ss_pred CcE-EEEEcCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 007487 136 GTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (602)
Q Consensus 136 Ge~-~aIlG~sGsGKSTLL~~L~Gl~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (602)
|-. ++|+|++|||||||+|.|+|..... ....|.|.++|.+... ....|++.+.+ ...|.. ..-.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp----~~lve~-f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIP----PQIVDA-FFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCC----GGGHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCC----HHHHHH-HHHH
Confidence 444 9999999999999999999986421 0246899998865311 11234443321 111221 1000
Q ss_pred H-HhcC----------CCc---hhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHH----HHH-hhCCC
Q 007487 207 A-LLQL----------PGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA----REL-VMRPH 267 (602)
Q Consensus 207 ~-~~~~----------~~~---~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA----~aL-~~~P~ 267 (602)
. .+.. ... ..+..+.+.++++.+++.+..--.+. .....+|+|+++|+.++ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~--NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL--NKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE--ECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE--ECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 0 0110 000 01112335667777776433200111 12235788888988887 554 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007487 268 VLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (602)
Q Consensus 268 iLlLDEPtsgLD~~~~~~i~~~L~~l~~ 295 (602)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988764
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.33 E-value=1.6e-07 Score=108.75 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 007487 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (602)
Q Consensus 245 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (602)
+.-+|+|+.+|..+++.++.++++||+|||.. +||......+++.+........+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 44589999999999999999999999999996 999888777777776655556788886455556777777743
No 171
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.33 E-value=1.6e-08 Score=97.41 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=31.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~ 177 (602)
..++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 34589999999999999999999999975 7788887653
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.29 E-value=7.5e-08 Score=96.66 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=36.0
Q ss_pred eEEEEeE-EEEEecccccccceeeceeeEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++++|+ ++.|. ....+|+|+|+.+++ |++++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99882 235799999999999 9999999999999999999999864
No 173
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.28 E-value=2.7e-06 Score=88.12 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=30.5
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
.-|+++.+-+.+|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777777789999999999999999999888774
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.20 E-value=9.4e-07 Score=93.07 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 007487 245 MKGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304 (602)
Q Consensus 245 ~~~LSGGqrqRv~IA~aL~~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~ 304 (602)
+..+|+||+|++. +.+...++-++++| ++..++|...+..+++.+..... +..+|++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 3478999998876 55555677789999 99999999998888888877653 66777666
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.17 E-value=4.3e-07 Score=86.44 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~ 163 (602)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999998753
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.14 E-value=1.3e-07 Score=91.08 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=40.9
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I--~i~G~~~ 177 (602)
....+.++...++|++++|+||||||||||+++|++++.. .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 3455666777789999999999999999999999998763 2766 7877543
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.14 E-value=4.3e-07 Score=94.43 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=54.9
Q ss_pred eeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--------------CceEEEE-cCC
Q 007487 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--------------YGSYGFV-ERE 190 (602)
Q Consensus 126 L~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~--------------~~~~~yv-~Q~ 190 (602)
++++++.+++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ...+.++ .|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 367888889999999999999999999999999987654 8898877553210 2347777 665
Q ss_pred CccCCCCCHHHHHH
Q 007487 191 TTLIGSLTVREYLY 204 (602)
Q Consensus 191 ~~l~~~lTV~E~l~ 204 (602)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444445443
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.07 E-value=1.7e-06 Score=81.49 Aligned_cols=38 Identities=32% Similarity=0.151 Sum_probs=34.0
Q ss_pred ee--eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 007487 125 VV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (602)
Q Consensus 125 iL--~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~ 163 (602)
.+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45 7889999999 99999999999999999999987654
No 179
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.06 E-value=1.9e-06 Score=82.41 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~ 163 (602)
++.+|++++|+||||||||||+++|+++..|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999999998554
No 180
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.06 E-value=2.1e-05 Score=82.27 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=77.6
Q ss_pred eecee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 007487 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 126 L~~vs-~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++.. | |. ...+.|+.-+..+ .....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 56889999999999999999999998874 22210 1 10 1234555444322 12221
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCC
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG-ERRRVRIARELV----MRPHVLFIDEPLYH 277 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGG-qrqRv~IA~aL~----~~P~iLlLDEPtsg 277 (602)
......+... .+++++.+. .....++. +.+.+..++.++ .+++++++|+.++-
T Consensus 174 ~~~~~~~g~~---------~~~~l~~l~-------------~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 174 RDIADRFNVD---------HDAVLDNVL-------------YARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHTTCC---------HHHHHHTEE-------------EEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHcCCC---------HHHHHhcee-------------EeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 1111111110 011222111 01122333 234555666666 56999999999987
Q ss_pred CCHH------------HHHHHHHHHHHHHH-cCCEEEEEEeC
Q 007487 278 LDSV------------SALLMMVTLKKLAS-TGCTLLFTINQ 306 (602)
Q Consensus 278 LD~~------------~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (602)
++.. ...++++.|+++++ .|.+||++.|-
T Consensus 232 ~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 232 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 6432 13556666777764 58888885553
No 181
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.05 E-value=2.8e-05 Score=80.61 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=78.5
Q ss_pred eeecee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 007487 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 125 iL~~vs-~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
.|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+. ..+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~~----~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTFR----WERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCCC----HHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCCC----HHHH
Confidence 344443 578899999999999999999999888642 2210 01 10 12345554443221 1111
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCc--hhhhhhhcCCCCCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCC
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCG-ERRRVRIARELV---MRPHVLFIDEPLY 276 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~ig~~~~~~~LSGG-qrqRv~IA~aL~---~~P~iLlLDEPts 276 (602)
.... +.+|+. ++.++.. ..+..++. +.+.+..++.++ .+|+++++|+.++
T Consensus 159 ~~~~--------------------~~~g~~~~~~~~~l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 159 ENMA--------------------KALGLDIDNVMNNIY----YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHH--------------------HHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHH--------------------HHhCCCHHHHhccEE----EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1111 112221 1111110 11123333 335677778888 5799999999998
Q ss_pred CCCH--------H----HHHHHHHHHHHHH-HcCCEEEEEEeC
Q 007487 277 HLDS--------V----SALLMMVTLKKLA-STGCTLLFTINQ 306 (602)
Q Consensus 277 gLD~--------~----~~~~i~~~L~~l~-~~g~tvi~t~h~ 306 (602)
-.+. . ...++++.|++++ +.+++||++.|-
T Consensus 215 l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 215 HFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 6532 1 1245566666666 458888886553
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=2.1e-06 Score=82.45 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred ccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
....++|||+.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999865
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=2.2e-06 Score=81.02 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i 172 (602)
+|++++|+||||||||||+++|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 69999999999999999999999987642 2355544
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=2e-06 Score=82.71 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH-HHhcCCEEEEEe
Q 007487 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-VFGLFDRICLLS 322 (602)
Q Consensus 249 SGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-i~~~~D~v~vL~ 322 (602)
+.|+.+|..+++.+..+|+.+.++ .+.++|.....+.+.++.. .+.++|+.+|...+. ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888999988888887644332 3345555555555444332 355777766544221 256788888774
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.00 E-value=8.5e-07 Score=96.18 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=51.0
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE-EeCCeEEEEeCch
Q 007487 264 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 333 (602)
Q Consensus 264 ~~P~iLlLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 333 (602)
.+|++||+||+..-.+. .++..++..+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887764 6788899999998888899999888865443333344332 4456666666653
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.98 E-value=2.4e-08 Score=109.77 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----ceEEEEcCCCc-cCCCC
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-----GSYGFVERETT-LIGSL 197 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~-----~~~~yv~Q~~~-l~~~l 197 (602)
.+++++++.+++| +.|+||||+|||||+++|+|... .|.|.++|.+..... +.+..++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 5788899999999 99999999999999999999864 278888886532110 12334444432 23334
Q ss_pred CHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 007487 198 TVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (602)
Q Consensus 198 TV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 274 (602)
.+.|++......+.. ....+....+.++ .. .|||||+|+..|+++..++|++ |||+
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~L-------------L~------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LV------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHH-------------HH------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHH-------------HH------HhcccccCccEEEEEecCChhh--cCcc
Confidence 444444211000000 0001111122222 21 5788899999999999999987 8888
Q ss_pred CC
Q 007487 275 LY 276 (602)
Q Consensus 275 ts 276 (602)
..
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 74
No 187
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.94 E-value=1.4e-06 Score=85.72 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~ 176 (602)
..++|++++|.|+||||||||+++|+|+ . |+|.+.+++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~----g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY---K----NDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG---T----TTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc---c----CCeEEEecC
Confidence 4458999999999999999999999997 2 888888765
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.92 E-value=1.3e-05 Score=84.32 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEeC
Q 007487 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQ 306 (602)
Q Consensus 248 LSGGqrqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~ 306 (602)
.++.++++..+++..+.+|+++|+.-..+..|... ...+++++.+...|. ++++ .+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V-~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGV-LTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEE-EEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEE-EeC
Confidence 56788999999999999999888774334445443 455667777765564 5555 444
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=4.7e-05 Score=77.23 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++..+.|.||+|+|||||+++|++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 57789999999999999999999854
No 190
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.90 E-value=5.7e-05 Score=79.11 Aligned_cols=43 Identities=7% Similarity=-0.049 Sum_probs=34.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEeCC
Q 007487 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQS 307 (602)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~t~h~~ 307 (602)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 577888888876
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.88 E-value=6.6e-06 Score=79.65 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999875
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.80 E-value=2e-06 Score=86.12 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=41.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCCC------CceEEEEcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKSEMP------YGSYGFVERE 190 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~---Gl~~~~~~~~G~I~--------i~G~~~~~~------~~~~~yv~Q~ 190 (602)
.+|++++|+|||||||||++++|+ |+..++ +|.|. .+|.+.... .+.+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 579999999999999999999999 887665 48888 777654211 1345666654
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=3.7e-06 Score=80.96 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=33.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~ 175 (602)
..+|++++|+|+||||||||+++|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 45799999999999999999999999886543 77766554
No 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.75 E-value=5.8e-06 Score=87.71 Aligned_cols=44 Identities=23% Similarity=0.168 Sum_probs=38.7
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i 172 (602)
..+++++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 276654
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.74 E-value=1e-05 Score=78.18 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 799999999999999999999999865
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.73 E-value=8e-06 Score=93.02 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=31.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~ 175 (602)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 456689999999999999999999999765432 123766 4453
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=8.4e-06 Score=76.12 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~ 175 (602)
+|++++|+|+|||||||++++|++.+ |.+.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 69999999999999999999999864 56667653
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.71 E-value=2.1e-05 Score=75.69 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 44579999999999999999999999975
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.68 E-value=4.5e-06 Score=86.68 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=34.2
Q ss_pred cceeeceeeEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 123 DKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge------~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
.+.|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457777777777766 9999999999999999999998763
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.66 E-value=6.6e-05 Score=76.85 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999999865
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.64 E-value=9.6e-06 Score=90.21 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G-~I~-i~G~~ 176 (602)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 467899999999999999999999999987753 5 674 77743
No 202
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.64 E-value=2.7e-05 Score=79.95 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEEeCChHHHHhcCCEEE
Q 007487 248 LPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC--TLLFTINQSSTEVFGLFDRIC 319 (602)
Q Consensus 248 LSGGqrqRv~IA~aL~--~~P~iLlLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~t~h~~~~~i~~~~D~v~ 319 (602)
+++|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 5667776 68999999 7899876 67788888888753 43 333433333 45555555543
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.63 E-value=0.00022 Score=77.22 Aligned_cols=169 Identities=17% Similarity=0.126 Sum_probs=94.1
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (602)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++....... | ..+.|+.- .++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g-------------~~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---G-------------VGVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---C-------------CCEEEEES------SSCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C-------------CeEEEEEC------CCCHHHHH
Confidence 45677777789999999999999999999988876432110 1 11233222 12332222
Q ss_pred HH--HHHhcCCCc------h-hhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEe
Q 007487 204 YY--SALLQLPGF------F-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLFID 272 (602)
Q Consensus 204 ~~--~~~~~~~~~------~-~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLD 272 (602)
.- +.....+.. . .+...++.+.++.+.-.++ .+. ...++|..+. .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l---~i~---d~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPI---YID---DTPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCE---EEE---CCTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCE---EEE---CCCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 10 111111100 0 1122233344433321111 110 1125777665 34556665 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHH-cCCEEEEEEeCChH------------------HHHhcCCEEEEEe
Q 007487 273 EPLYHLDS----------VSALLMMVTLKKLAS-TGCTLLFTINQSST------------------EVFGLFDRICLLS 322 (602)
Q Consensus 273 EPtsgLD~----------~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~------------------~i~~~~D~v~vL~ 322 (602)
..+.-.+. .....+.+.|+.+++ .+++||+++|-... .+.+.||.|+.|+
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 98764432 123567788888875 58899987663210 2456789888885
No 204
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.62 E-value=2e-05 Score=73.24 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999764
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.60 E-value=6.2e-05 Score=81.11 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G 174 (602)
++.+++++|++|+||||++..|++.+...+ ++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 588999999999999999999998876543 5555533
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.46 E-value=1.6e-05 Score=78.36 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 007487 249 PCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (602)
Q Consensus 249 SGGqrqRv~IA~aL~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (602)
+.|...+.. ...+.+-+++++||.-. ++|......+++.+.....+-.+++++.+.+.+.+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456665553 33578899999999976 68877775555555544434457788777776665555543
No 207
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.45 E-value=5.4e-05 Score=81.54 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.7
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~ 163 (602)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 345679999999999999999999999988764
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.43 E-value=7.3e-05 Score=68.64 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=24.5
Q ss_pred eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 127 ~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
++..+.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3344455555 999999999999999999873
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.43 E-value=6.7e-05 Score=71.58 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=30.9
Q ss_pred hCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCEEEEEEeCChHHHHhc
Q 007487 264 MRPHVLFIDEPLY-HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGL 314 (602)
Q Consensus 264 ~~P~iLlLDEPts-gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (602)
.++++|++||+-. .++...+..++ .++......+..+|++++.+..++...
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 4678999999933 23333344344 455555456677888888876665543
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.41 E-value=0.00018 Score=74.07 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=36.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 007487 263 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (602)
Q Consensus 263 ~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (602)
..++++||+||+-. ..|...+..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35699999999865 234478888999999888888888888876643
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.40 E-value=0.00014 Score=84.52 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+.+++|+.++|.||||+|||||+++|+|....
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998643
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.38 E-value=4e-05 Score=79.93 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
++..+.|.||+|+|||||++.+++...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998754
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.37 E-value=1.9e-05 Score=82.67 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=41.8
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~ 175 (602)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEee
Confidence 468889999999999999999999999999999999876543 66655443
No 214
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.0029 Score=66.42 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.0
Q ss_pred eeecee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 125 iL~~vs--~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 35789999999999999999999887754
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.33 E-value=4.5e-05 Score=71.48 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G--~I~i~G~ 175 (602)
+|++++|+|++||||||+++.|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999976542 4 5555553
No 216
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.28 E-value=9.7e-05 Score=72.74 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=27.3
Q ss_pred eeceeeEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 126 L~~vs~~i~---~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 444455554 7999999999999999999999998765
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.26 E-value=0.00068 Score=73.39 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=29.2
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34666666688999999999999999999877765
No 218
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.22 E-value=4.5e-05 Score=80.56 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.5
Q ss_pred eEEEEeEEEEEecccccccceee--------------ceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+.|+|++..|+. .+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4788999988863 345787 899999999999999999999999999999864
No 219
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.0013 Score=67.76 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.1
Q ss_pred eeecee-eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 125 iL~~vs-~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
-|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5688999999999999999999988875
No 220
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.003 Score=61.82 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4899999999999999999997654
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.14 E-value=9.1e-05 Score=77.71 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~ 176 (602)
++.+++|+|++|||||||+|.|+|...+.+ |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 588999999999999999999999876653 777665543
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.12 E-value=7.8e-05 Score=82.87 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=39.3
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G 174 (602)
.+++++++.+ +|+.++|+||||+|||||+++|++...+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4677788777 89999999999999999999999987654 37776655
No 223
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.10 E-value=0.00022 Score=69.05 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.+++|+|+|||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
No 224
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.08 E-value=0.00062 Score=63.15 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999864
No 225
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.00088 Score=67.25 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++.-+.|.||+|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999864
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.04 E-value=0.00023 Score=68.32 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34799999999999999999999998764
No 227
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.00011 Score=70.92 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G--~I~i~G~ 175 (602)
+.+|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 4579999999999999999999999987643 26 6777653
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.99 E-value=0.00038 Score=67.12 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=23.9
Q ss_pred ceeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 128 ~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 344555554 999999999999999998864
No 229
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.97 E-value=0.00074 Score=65.29 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=31.7
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEEeCCh
Q 007487 264 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQSS 308 (602)
Q Consensus 264 ~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~t~h~~~ 308 (602)
.+|.+|++||.-.-- +...+..+.+.+..+.+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965432 233477788888888776765 777776543
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.92 E-value=0.00035 Score=65.90 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~ 175 (602)
.+++|+|+||||||||++.|.+.++..+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 579999999999999999999876543223466766553
No 231
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00042 Score=65.32 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.0
Q ss_pred ceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 128 ~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45677778999999999999999999999975
No 232
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.88 E-value=0.001 Score=71.81 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~~------~---~~~~G~I~i~G~~ 176 (602)
.++|+|+||+|||||++.|+|.... + ....|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999998531 0 0135889999875
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.87 E-value=0.001 Score=62.66 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888877777 6799999999999999999974
No 234
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00048 Score=65.69 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 007487 138 MTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~G 158 (602)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.00034 Score=65.83 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~ 163 (602)
.+|.++.|+|++||||||+.+.|++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999999999999887543
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.79 E-value=0.00031 Score=75.52 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007487 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (602)
Q Consensus 127 ~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~ 176 (602)
+++++. +|++++++|+|||||||++..|++.+.+.+ |+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecc
Confidence 567777 899999999999999999999999987654 778776644
No 237
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.78 E-value=0.005 Score=64.37 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999764
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.74 E-value=0.019 Score=60.35 Aligned_cols=28 Identities=43% Similarity=0.572 Sum_probs=24.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
+-+++|+++.|.|++|+|||||+..++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3578999999999999999999877764
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.72 E-value=0.0004 Score=69.10 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~ 176 (602)
...++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 4557899999999999999999999987642 456777643
No 240
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.71 E-value=0.00027 Score=74.04 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=34.6
Q ss_pred cceeeceeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCC
Q 007487 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~--~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
..+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578888888999999 99999999999999999998753
No 241
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.71 E-value=0.0099 Score=65.07 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=27.7
Q ss_pred eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 125 iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
-|+.+.+-+.+|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555545588999999999999999999876664
No 242
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.69 E-value=0.00049 Score=65.43 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=31.1
Q ss_pred cceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
..+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458889998887775 789999999999999999873
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.67 E-value=0.0019 Score=63.30 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (602)
+|+++++||--- |+. ++++.++.+++.|..||++-| ..+..+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 356667777777999999988 66778889999999875
No 244
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.61 E-value=0.007 Score=59.50 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+..-+.|.||+|+|||||++.|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999999754
No 245
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.60 E-value=0.00025 Score=72.64 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=36.4
Q ss_pred ec-eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 007487 127 KS-SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (602)
Q Consensus 127 ~~-vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~ 176 (602)
++ +++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 34 666655 99999999999999999999999876543 667665543
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.00087 Score=63.85 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999864
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0011 Score=61.98 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999854
No 248
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.53 E-value=0.016 Score=59.69 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 356679999999999999999999865
No 249
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.52 E-value=0.0013 Score=60.30 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998643
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.00037 Score=72.28 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=35.0
Q ss_pred cceeeceeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 123 ~~iL~~vs~~i~~Ge~--~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4577888888889988 999999999999999999997654
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.49 E-value=0.0016 Score=66.85 Aligned_cols=52 Identities=19% Similarity=0.040 Sum_probs=30.8
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhc
Q 007487 263 VMRPHVLFIDEPL-YHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGL 314 (602)
Q Consensus 263 ~~~P~iLlLDEPt-sgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (602)
+.++++||+||.- ..++...+..++. +|......+..+|+|++.+..+....
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444554 55554445667888888877666544
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.49 E-value=0.0015 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
No 253
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.48 E-value=0.0013 Score=70.07 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=31.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CC---CCceeEEEECCE
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-----HS---ARMYGEVFVNGA 175 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~-----~~---~~~~G~I~i~G~ 175 (602)
+.+..|..++|+|+||+|||||++.|+|... |. ....|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455788999999999999999999999721 00 112478877663
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.45 E-value=0.0015 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 255
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0026 Score=66.03 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999765
No 256
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.40 E-value=0.0017 Score=68.48 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.8
Q ss_pred eeceeeEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 007487 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (602)
Q Consensus 126 L~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~ 157 (602)
+++..+.+.+| +++|.|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35566666665 99999999999999999986
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.40 E-value=0.0016 Score=63.76 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999999743
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.0015 Score=64.74 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=23.3
Q ss_pred eceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 127 ~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
+++++...+| +.|.||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3333333444 88999999999999999998753
No 259
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.27 E-value=0.0023 Score=59.74 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 260
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.25 E-value=0.00041 Score=73.01 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=33.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
.+.++|++..+ ..+.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 36677776544 2345788888876 99999999999999999887443
No 261
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.23 E-value=0.002 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 262
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.0023 Score=59.39 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.21 E-value=0.0023 Score=63.13 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999653
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.17 E-value=0.0024 Score=59.81 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+|.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.13 E-value=0.0025 Score=63.45 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999854
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.12 E-value=0.0029 Score=64.33 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G 174 (602)
.|.++.|.|||||||||+.+.|+..++. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876532 5566665
No 267
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.11 E-value=0.013 Score=72.53 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 132 ~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
=+.+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999988753
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.08 E-value=0.0029 Score=57.70 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 007487 138 MTVIMGPAKSGKSTLLRAI 156 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L 156 (602)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 269
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.05 E-value=0.0033 Score=60.54 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.05 E-value=0.0034 Score=58.58 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998653
No 271
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.99 E-value=0.004 Score=58.91 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.98 E-value=0.0033 Score=59.84 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999986554
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.97 E-value=0.0036 Score=58.99 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
No 274
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.96 E-value=0.0034 Score=58.46 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999854
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.94 E-value=0.026 Score=58.11 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHH-HHHHc
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLL-RAIAG 158 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL-~~L~G 158 (602)
+=+.+| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 346689 9999999999999995 44444
No 276
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.92 E-value=0.0043 Score=58.87 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999997654
No 277
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.85 E-value=0.0031 Score=59.10 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
.+++|+|++|||||||++.|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37999999999999999999987543
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.85 E-value=0.0045 Score=57.11 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~G 158 (602)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.84 E-value=0.0046 Score=58.89 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998643
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.83 E-value=0.0042 Score=57.57 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.83 E-value=0.0046 Score=58.35 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999975
No 282
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.83 E-value=0.0045 Score=58.09 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998643
No 283
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.83 E-value=0.0024 Score=62.62 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=44.9
Q ss_pred HHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC-h--------------------HHHHhcCCEE
Q 007487 261 ELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQS-S--------------------TEVFGLFDRI 318 (602)
Q Consensus 261 aL~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~-~--------------------~~i~~~~D~v 318 (602)
+|..+|+++++||+-. ..+.......++.+..+...|..++.|+|-. . +.+++.||.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 3446899999999764 2443333334444445556788899888721 0 2344566666
Q ss_pred EEEeCCeEEEEeCchhHHhhhhh
Q 007487 319 CLLSNGNTLFFGETLACLQHFSN 341 (602)
Q Consensus 319 ~vL~~G~iv~~G~~~~~~~~f~~ 341 (602)
.+++ =+|+++.+.+..
T Consensus 160 ~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEBC-------CCHHHHHHHHHT
T ss_pred EEec-------CCHHHHHHHHHC
Confidence 6653 466676666554
No 284
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.81 E-value=0.029 Score=58.55 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.-+.|.||+|+|||||+++|+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45558899999999999999999754
No 285
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.77 E-value=0.0022 Score=61.21 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 286
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.77 E-value=0.012 Score=64.28 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 133 i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.+..-+.|.||+|+|||+|+++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999998754
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.75 E-value=0.085 Score=65.40 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=84.9
Q ss_pred eeecee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 007487 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (602)
Q Consensus 125 iL~~vs--~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (602)
-|+.+- +=+.+|+++.|.||+|+|||||+-.++...... | ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~----------G-------~~vlyis~E~s~~~---~--- 426 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----------G-------KTCAFIDAEHALDP---I--- 426 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----------T-------CCEEEECTTSCCCH---H---
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh----------C-------CCeEEEEccCchHH---H---
Confidence 455554 358899999999999999999987776432111 1 12445444332211 0
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH
Q 007487 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS 280 (602)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ig~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPtsgLD~ 280 (602)
.+. .+|++. .+-.+- . .-++.|- +.+++.++ .+|+++++|..++-...
T Consensus 427 --~a~--------------------~lGvd~-~~L~i~---~--~~~~e~~--l~~l~~lv~~~~~~lVVIDSL~al~~~ 476 (1706)
T 3cmw_A 427 --YAR--------------------KLGVDI-DNLLCS---Q--PDTGEQA--LEICDALARSGAVDVIVVDSVAALTPK 476 (1706)
T ss_dssp --HHH--------------------HTTCCG-GGCEEE---C--CSSHHHH--HHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred --HHH--------------------HcCCCH-HHeEEc---C--CCCHHHH--HHHHHHHHHhcCCCEEEECCHHHhhcc
Confidence 011 122210 000000 0 1123332 34555554 47999999999886641
Q ss_pred -------------HHHHHHHHHHHHH---H-HcCCEEEEEEeCCh---------------HHHHhcCCEEEEEeCCeEEE
Q 007487 281 -------------VSALLMMVTLKKL---A-STGCTLLFTINQSS---------------TEVFGLFDRICLLSNGNTLF 328 (602)
Q Consensus 281 -------------~~~~~i~~~L~~l---~-~~g~tvi~t~h~~~---------------~~i~~~~D~v~vL~~G~iv~ 328 (602)
...+.+.+.+++| + +.|++||++.|... ..+...+|-++.|+..+.+.
T Consensus 477 ~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~ 556 (1706)
T 3cmw_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc
Confidence 1223445555555 3 56899999765321 24567899888887655444
Q ss_pred Ee
Q 007487 329 FG 330 (602)
Q Consensus 329 ~G 330 (602)
.|
T Consensus 557 ~g 558 (1706)
T 3cmw_A 557 EG 558 (1706)
T ss_dssp ET
T ss_pred cC
Confidence 43
No 288
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.72 E-value=0.0054 Score=58.41 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
No 289
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.70 E-value=0.0058 Score=57.02 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.65 E-value=0.0055 Score=57.10 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.54 E-value=0.0056 Score=61.28 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 292
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.47 E-value=0.0069 Score=57.34 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.45 E-value=0.0083 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+|-++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998643
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.43 E-value=0.0076 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998653
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.42 E-value=0.0079 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 296
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.41 E-value=0.088 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.37 E-value=0.006 Score=56.58 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 298
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.33 E-value=0.0054 Score=64.82 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 007487 265 RPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (602)
+|.++++||-=.-++ +.....+.+.+++.++.|..+++++|.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 588999999988884 67788888888998888999988887775
No 299
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.0079 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 300
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.33 E-value=0.029 Score=70.32 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.3
Q ss_pred eeecee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 125 iL~~vs--~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-|+.+- +=+++|+++.|.||+|+|||||+..++.-
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 35889999999999999999998777653
No 301
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.28 E-value=0.009 Score=57.91 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.++.|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998643
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.27 E-value=0.0085 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 303
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.26 E-value=0.02 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999766654
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.24 E-value=0.0096 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999864
No 305
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.23 E-value=0.014 Score=60.00 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=29.6
Q ss_pred ceeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
..+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4666766655 7889999999999999999999875
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0098 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999984
No 307
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.22 E-value=0.011 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+-+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998643
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.22 E-value=0.011 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
=++++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
No 309
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.21 E-value=0.0099 Score=56.89 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.17 E-value=0.008 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37999999999999999998754
No 311
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.16 E-value=0.011 Score=55.24 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 312
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.16 E-value=0.0098 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.16 E-value=0.009 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998763
No 314
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.15 E-value=0.0097 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999753
No 315
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.15 E-value=0.01 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 316
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.15 E-value=0.015 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.14 E-value=0.0093 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.10 E-value=0.0093 Score=55.55 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.10 E-value=0.011 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.10 E-value=0.012 Score=55.71 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.07 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999875
No 322
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.06 E-value=0.011 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.05 E-value=0.012 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 324
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.04 E-value=0.012 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.04 E-value=0.01 Score=57.31 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.011 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 327
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.02 E-value=0.018 Score=60.47 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
|-.++|+|.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999994
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.02 E-value=0.012 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 329
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.01 E-value=0.01 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 330
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.01 E-value=0.01 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999764
No 331
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.00 E-value=0.042 Score=52.35 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (602)
+.+++++||--- +|+. +++.++.+++.|..||++-+ .++.++..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 6643 36677888877999999887 66778899999998775
No 332
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.00 E-value=0.011 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 333
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.00 E-value=0.012 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 334
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.99 E-value=0.012 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 335
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.97 E-value=0.015 Score=53.00 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34579999999999999999998853
No 336
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.95 E-value=0.0098 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 337
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.94 E-value=0.011 Score=55.06 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 338
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.93 E-value=0.012 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.++|+|.+|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 489999999999999999999643
No 339
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.93 E-value=0.011 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999986
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.91 E-value=0.014 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 341
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.89 E-value=0.012 Score=54.62 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.87 E-value=0.014 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 343
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.87 E-value=0.073 Score=51.62 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (602)
+.+++++||--- ||.. +++.|+.++..|..||++-+ .++..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33777887778999999988 78889999999999885
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.84 E-value=0.016 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
++-.++|.|++||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 345
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.84 E-value=0.015 Score=55.50 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
..+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 346
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.82 E-value=0.014 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 347
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.81 E-value=0.014 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|+.|+|||||++.|.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 348
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.80 E-value=0.21 Score=53.66 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976543
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.80 E-value=0.013 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
No 350
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.79 E-value=0.014 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999999754
No 351
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.78 E-value=0.024 Score=58.89 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999865
No 352
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.78 E-value=0.015 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999999753
No 353
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.76 E-value=0.014 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 354
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.75 E-value=0.023 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.|..++|+||+|+|||||...|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5888999999999999999999865
No 355
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.73 E-value=0.014 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.73 E-value=0.014 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999853
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.71 E-value=0.015 Score=52.29 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl 159 (602)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.63 E-value=0.015 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.63 E-value=0.018 Score=53.37 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
-++|+|++|+|||||++.|.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4899999999999999999997543
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.016 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 361
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.61 E-value=0.0093 Score=60.65 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998743
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.61 E-value=0.016 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
No 363
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.60 E-value=0.017 Score=58.93 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.59 E-value=0.017 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 365
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.55 E-value=0.01 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999999874
No 366
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.55 E-value=0.017 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999999763
No 367
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.52 E-value=0.017 Score=58.24 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~G 158 (602)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.52 E-value=0.018 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.49 E-value=0.015 Score=58.31 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 370
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.48 E-value=0.019 Score=57.92 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
...+.|.||+|+|||||+++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999997654
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.48 E-value=0.019 Score=58.69 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999963
No 372
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.47 E-value=0.023 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.46 E-value=0.02 Score=55.40 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.44 E-value=0.02 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.42 E-value=0.018 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 376
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.41 E-value=0.019 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 377
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.41 E-value=0.019 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 378
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.40 E-value=0.018 Score=57.30 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999973
No 379
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.39 E-value=0.019 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 380
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.37 E-value=0.02 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999999864
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.33 E-value=0.02 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
No 382
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.019 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 383
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.31 E-value=0.0075 Score=57.51 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
..+.|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998754
No 384
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.30 E-value=0.02 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 385
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.30 E-value=0.02 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999754
No 386
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.29 E-value=0.016 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
No 387
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.28 E-value=0.02 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.28 E-value=0.02 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998864
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.28 E-value=0.021 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999753
No 390
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.26 E-value=0.02 Score=60.35 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl 159 (602)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999986
No 391
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.25 E-value=0.022 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.21 E-value=0.024 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 393
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.19 E-value=0.021 Score=55.93 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.+|.++.|.|++||||||+.+.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999987653
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.18 E-value=0.023 Score=52.75 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.023 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998753
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.18 E-value=0.024 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.16 E-value=0.029 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998653
No 398
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.16 E-value=0.028 Score=54.43 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+|.++.|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
No 399
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.15 E-value=0.023 Score=53.39 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 400
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.12 E-value=0.026 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 401
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.12 E-value=0.022 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999999864
No 402
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.11 E-value=0.025 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 403
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.10 E-value=0.17 Score=49.65 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=44.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC---------ChHHHHhcCCEEEEEe
Q 007487 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (602)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (602)
.+.+++++||----.| +.++++.+++.|..||++-++ .+..+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999887754 667777777789999999999 8888999999999874
No 404
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.09 E-value=0.022 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8899999999999999998753
No 405
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.07 E-value=0.025 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 406
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.07 E-value=0.013 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 407
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.07 E-value=0.025 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|+|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8899999999999999999754
No 408
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.023 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999999854
No 409
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.06 E-value=0.023 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.05 E-value=0.024 Score=56.91 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.04 E-value=0.025 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999875
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.025 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
=.++|+|++|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
No 413
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.01 E-value=0.031 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+..++.|+||+||||+|..+.|+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.00 E-value=0.026 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.99 E-value=0.024 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.026 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 417
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.026 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
No 418
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.97 E-value=0.019 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 419
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.97 E-value=0.026 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 420
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.96 E-value=0.027 Score=57.19 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.95 E-value=0.025 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.95 E-value=0.026 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 423
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.94 E-value=0.025 Score=54.53 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.94 E-value=0.028 Score=58.41 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998653
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.93 E-value=0.025 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999988653
No 426
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.93 E-value=0.023 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999975
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.91 E-value=0.027 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.91 E-value=0.03 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999854
No 429
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.88 E-value=0.032 Score=55.05 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999876643
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.87 E-value=0.029 Score=59.93 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
...+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
No 431
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.84 E-value=0.028 Score=51.46 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.028 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 433
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.80 E-value=0.023 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 434
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.79 E-value=0.032 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999998654
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.77 E-value=0.038 Score=56.79 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4579999999999999999999765
No 436
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.75 E-value=0.033 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 437
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.72 E-value=0.05 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.|.-+.|.|+||+|||||...|..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5888999999999999999988763
No 438
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.72 E-value=0.031 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 439
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.71 E-value=0.032 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999988753
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.67 E-value=0.032 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 441
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.67 E-value=0.45 Score=59.91 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=31.1
Q ss_pred cceeecee--eEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 007487 123 DKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIA 157 (602)
Q Consensus 123 ~~iL~~vs--~~i~~Ge~~aIlG~sGsGKSTLL~~L~ 157 (602)
...|+++. +-+++|+.+.|.||+|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 35678888 589999999999999999999999876
No 442
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.66 E-value=0.028 Score=56.37 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 443
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.66 E-value=0.038 Score=59.84 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.6
Q ss_pred eeeceeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 125 iL~~vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 455589999999999999999999998754
No 444
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.65 E-value=0.03 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 445
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.63 E-value=0.032 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 446
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.62 E-value=0.015 Score=59.82 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (602)
+++|+++|| ...|+...+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 667999999 788999888888888877543 334555566553
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.62 E-value=0.039 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+|.++.|.|++||||||+++.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876643
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.038 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
|.+++|-|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999997663
No 449
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.55 E-value=0.047 Score=52.83 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.8
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChH---------HHHhcCCEEEEEe
Q 007487 263 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLA-STGCTLLFTINQSST---------EVFGLFDRICLLS 322 (602)
Q Consensus 263 ~~~P~iLlLDEPts----gLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~---------~i~~~~D~v~vL~ 322 (602)
-.+|+++++|--+. .-|.....+++..|++++ +.|++++++.|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999996432 124455667777888877 458999997765421 1245689888875
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.54 E-value=0.04 Score=53.51 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~~ 162 (602)
+|.++.+.|++||||||+.+.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999987654
No 451
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.52 E-value=0.038 Score=57.05 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999865
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.52 E-value=0.023 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.52 E-value=0.033 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|+|++|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8899999999999999999853
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.48 E-value=0.035 Score=55.12 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.44 E-value=0.046 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999987654
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.43 E-value=0.031 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.=.++|+|++|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 345999999999999999999753
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.037 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999975
No 458
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.33 E-value=0.037 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.32 E-value=0.045 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
++.|+||+||||+|..+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 460
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.044 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.23 E-value=0.03 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.+++|.|+.||||||+.+.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999998765
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.17 E-value=0.042 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-.++|+|.+|+|||||++.+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998865
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.08 E-value=0.016 Score=57.42 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999853
No 464
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.03 E-value=0.021 Score=54.34 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998643
No 465
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.00 E-value=0.044 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998753
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.047 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.84 E-value=0.062 Score=55.11 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999764
No 468
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.83 E-value=0.053 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4799999999999999999999754
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.83 E-value=0.032 Score=51.70 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~G 158 (602)
=.++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3599999999999999999865
No 470
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.81 E-value=0.022 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.77 E-value=0.021 Score=66.21 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=28.9
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 129 vs~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
.++.+.+|+.+.|.||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355677899999999999999999999999763
No 472
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.76 E-value=0.049 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 473
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.76 E-value=0.044 Score=59.11 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999884
No 474
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.70 E-value=0.058 Score=48.37 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (602)
+..+|++||.- .|++..+..+++.|... ..+..+|++++.+..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 34689999985 68888888888888332 2345677777776543
No 475
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.65 E-value=0.056 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.59 E-value=0.054 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.47 E-value=0.065 Score=56.91 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998754
No 478
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.27 E-value=0.18 Score=54.79 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHH--HHHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 007487 245 MKGLPCGERRRVRI--ARELVM---------------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (602)
Q Consensus 245 ~~~LSGGqrqRv~I--A~aL~~---------------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (602)
..++||||+|-.-+ +.+++. .=.++++||. +-+|.......++++++| |.-+|+++ |
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat--P 450 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA--P 450 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE--S
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC--c
Confidence 45799999996433 334333 1258999999 999999999999999976 55566544 3
Q ss_pred hHHHHhcCCEEEEEe
Q 007487 308 STEVFGLFDRICLLS 322 (602)
Q Consensus 308 ~~~i~~~~D~v~vL~ 322 (602)
. .+....|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 2 4566788888774
No 479
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.22 E-value=0.082 Score=49.77 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC---------hHHHHhcCCEEEEEe
Q 007487 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS---------STEVFGLFDRICLLS 322 (602)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~---------~~~i~~~~D~v~vL~ 322 (602)
+++++++||--- +|+ .+++.|+.++++|..|+++-+.. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 543 36677787887799999988732 244566788886664
No 480
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.19 E-value=0.078 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++..+.|.||+|+|||||++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999988765
No 481
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.19 E-value=0.085 Score=54.42 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.7
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 131 ~~i~~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+-+.+|.++.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56778999999999999999999998753
No 482
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.06 E-value=0.078 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.06 E-value=0.078 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-+||+|+.||||||+.+.|+-.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 484
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.55 E-value=0.092 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765
No 485
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.47 E-value=0.096 Score=51.93 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
+...+.|.||+|+|||||++.|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457889999999999999999875
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.36 E-value=0.11 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999975
No 487
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.67 E-value=0.037 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 007487 138 MTVIMGPAKSGKSTLLRAIAG 158 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~G 158 (602)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 489999999999999998875
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.33 E-value=0.1 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 577899999999999999999998754
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.28 E-value=0.1 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 007487 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 137 e~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
-.++|+|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998876
No 490
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.27 E-value=0.094 Score=55.66 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 007487 139 TVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 139 ~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++|+|.+++|||||++.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
No 491
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.26 E-value=0.11 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999754
No 492
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.15 E-value=0.09 Score=56.35 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl 159 (602)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.13 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999765
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.12 E-value=0.12 Score=52.76 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45669999999999999999998753
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.09 E-value=0.072 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHH-HHcC
Q 007487 138 MTVIMGPAKSGKSTLLRA-IAGR 159 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~-L~Gl 159 (602)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 389999999999999998 5554
No 496
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.07 E-value=0.067 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
No 497
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.07 E-value=0.1 Score=57.20 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 134 ~~Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
+.|-.+.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999998765
No 498
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.01 E-value=0.11 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 007487 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 135 ~Ge~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999865
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.95 E-value=0.14 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 007487 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (602)
Q Consensus 136 Ge~~aIlG~sGsGKSTLL~~L~Gl~~ 161 (602)
|.+++|=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 500
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.83 E-value=0.025 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 007487 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (602)
Q Consensus 138 ~~aIlG~sGsGKSTLL~~L~Gl~ 160 (602)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999988753
Done!