Query 007488
Match_columns 601
No_of_seqs 160 out of 1480
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 2E-119 5E-124 1009.8 61.2 586 1-593 1-586 (600)
2 PRK12852 groEL chaperonin GroE 100.0 4E-112 9E-117 947.5 62.2 526 62-591 2-528 (545)
3 PRK12849 groEL chaperonin GroE 100.0 5E-112 1E-116 944.2 62.4 530 62-597 1-531 (542)
4 PRK00013 groEL chaperonin GroE 100.0 5E-112 1E-116 944.0 61.8 532 62-597 1-533 (542)
5 PRK12850 groEL chaperonin GroE 100.0 1E-111 2E-116 942.5 61.1 535 62-601 2-544 (544)
6 CHL00093 groEL chaperonin GroE 100.0 1E-110 3E-115 932.3 59.9 524 62-590 1-527 (529)
7 PTZ00114 Heat shock protein 60 100.0 2E-110 5E-115 934.6 61.2 528 61-591 12-543 (555)
8 PRK12851 groEL chaperonin GroE 100.0 3E-110 6E-115 930.8 60.8 527 62-593 2-529 (541)
9 TIGR02348 GroEL chaperonin Gro 100.0 7E-110 2E-114 925.6 60.8 521 64-589 2-523 (524)
10 PRK14104 chaperonin GroEL; Pro 100.0 9E-110 2E-114 926.7 60.8 527 63-593 3-530 (546)
11 cd03344 GroEL GroEL_like type 100.0 1E-108 2E-113 914.9 59.8 518 64-586 1-519 (520)
12 KOG0356 Mitochondrial chaperon 100.0 6E-108 1E-112 864.8 42.3 531 55-593 10-542 (550)
13 COG0459 GroL Chaperonin GroEL 100.0 4.5E-93 9.8E-98 783.5 35.6 500 62-592 2-518 (524)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-91 2.7E-96 774.2 45.4 448 72-588 11-483 (484)
15 cd03343 cpn60 cpn60 chaperonin 100.0 5.3E-91 1.1E-95 776.6 50.9 457 65-587 9-516 (517)
16 cd03335 TCP1_alpha TCP-1 (CTT 100.0 5E-91 1.1E-95 777.5 49.3 459 72-589 7-527 (527)
17 TIGR02339 thermosome_arch ther 100.0 7.6E-91 1.6E-95 775.1 50.6 456 65-586 10-518 (519)
18 TIGR02347 chap_CCT_zeta T-comp 100.0 1.2E-90 2.6E-95 772.8 51.3 456 72-591 15-529 (531)
19 TIGR02340 chap_CCT_alpha T-com 100.0 2.3E-90 5E-95 773.2 50.4 461 72-591 11-533 (536)
20 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.4E-90 1.4E-94 768.5 49.8 456 65-586 17-526 (526)
21 cd03338 TCP1_delta TCP-1 (CTT 100.0 6.5E-90 1.4E-94 767.2 48.2 459 72-587 7-515 (515)
22 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.7E-89 3.8E-94 764.7 50.6 456 72-588 15-520 (522)
23 TIGR02344 chap_CCT_gamma T-com 100.0 2.6E-89 5.7E-94 763.7 49.8 455 72-590 15-524 (525)
24 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.7E-88 3.7E-93 755.2 52.6 454 72-590 12-516 (517)
25 TIGR02343 chap_CCT_epsi T-comp 100.0 9.2E-89 2E-93 758.8 50.2 451 72-586 26-530 (532)
26 TIGR02346 chap_CCT_theta T-com 100.0 4.4E-89 9.5E-94 761.3 47.1 462 72-598 17-530 (531)
27 TIGR02342 chap_CCT_delta T-com 100.0 5.7E-89 1.2E-93 759.0 47.8 459 72-587 8-516 (517)
28 TIGR02345 chap_CCT_eta T-compl 100.0 1.2E-88 2.5E-93 757.3 50.3 458 66-588 13-520 (522)
29 PTZ00212 T-complex protein 1 s 100.0 3E-88 6.6E-93 755.3 51.9 455 72-591 21-529 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 9.1E-88 2E-92 743.1 45.4 434 72-586 15-479 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 1.3E-86 2.8E-91 739.5 52.5 454 72-590 13-517 (519)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.3E-87 1.4E-91 735.0 46.2 437 72-587 7-471 (472)
33 cd00309 chaperonin_type_I_II c 100.0 3.5E-86 7.5E-91 729.2 49.8 439 65-586 2-464 (464)
34 KOG0361 Chaperonin complex com 100.0 2.6E-85 5.6E-90 663.0 33.9 459 73-592 20-527 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 3.5E-80 7.6E-85 684.5 44.0 440 85-589 1-485 (485)
36 KOG0358 Chaperonin complex com 100.0 3.7E-78 7.9E-83 610.1 29.5 458 72-587 25-533 (534)
37 KOG0363 Chaperonin complex com 100.0 1.2E-75 2.6E-80 589.4 34.9 457 72-593 17-524 (527)
38 KOG0362 Chaperonin complex com 100.0 3E-71 6.5E-76 577.6 38.5 460 70-594 23-527 (537)
39 KOG0360 Chaperonin complex com 100.0 2.2E-70 4.8E-75 567.5 27.0 465 72-596 18-544 (545)
40 KOG0364 Chaperonin complex com 100.0 4.9E-66 1.1E-70 530.6 22.7 451 77-591 23-524 (527)
41 KOG0359 Chaperonin complex com 100.0 1.6E-61 3.4E-66 496.7 23.4 451 74-588 18-515 (520)
42 KOG0357 Chaperonin complex com 100.0 9.9E-60 2.1E-64 471.0 20.8 373 58-589 15-397 (400)
43 cd03333 chaperonin_like chaper 100.0 4.1E-27 8.9E-32 233.1 20.9 191 204-470 3-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 3.8E-25 8.2E-30 226.1 20.8 198 215-471 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.1 9.5E-10 2.1E-14 129.4 13.8 205 215-478 333-575 (1598)
46 COG0459 GroL Chaperonin GroEL 96.8 0.0025 5.4E-08 71.7 6.9 88 295-398 260-354 (524)
47 smart00574 POX domain associat 52.1 87 0.0019 29.1 8.1 59 421-492 70-129 (140)
48 TIGR02345 chap_CCT_eta T-compl 51.1 4.9 0.00011 45.6 -0.1 60 305-365 247-315 (522)
49 PF07526 POX: Associated with 28.7 1.4E+02 0.003 27.9 5.7 58 422-492 71-129 (140)
50 COG1433 Uncharacterized conser 25.8 2.8E+02 0.0061 25.2 7.0 41 297-345 57-97 (121)
51 PF07818 HCNGP: HCNGP-like pro 21.9 90 0.002 27.1 3.0 55 514-576 31-85 (96)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.2e-119 Score=1009.75 Aligned_cols=586 Identities=91% Similarity=1.247 Sum_probs=556.6
Q ss_pred CcccccccccccccccCCCcccchhcccccccccccccccccccccccccccccccccccccccccccCCcHHHHHHHHH
Q 007488 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQN 80 (601)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~f~~~~~~~~~~~~ 80 (601)
|||++.+.++.++..++... ++.+.++|...++..+|+++++.+.+++..++..++|+|+||.+.++|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ar~~l~~ 73 (600)
T PLN03167 1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKVKAAKELHFNKDGSAIKKLQA 73 (600)
T ss_pred CcchhhhhhhhcCccccccc-------ccccccccccccccccccccccccccccCCchhhhcceeecCCcHHHHHHHHH
Confidence 88998888888888877544 45577888888899999776666666666677767999999933379999999
Q ss_pred HHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcccHHHHHHHH
Q 007488 81 GVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 160 (601)
Q Consensus 81 ~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTTt~vvLa~~ 160 (601)
||+.|+++|++||||+||||||++++|+|+|||||+||+|+|+++||++|+||+||+++|++||+++||||||++||+++
T Consensus 74 g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~ 153 (600)
T PLN03167 74 GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153 (600)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHhhcCChhHHHHHHHHHHHhhccCCceEEec
Q 007488 161 LIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240 (601)
Q Consensus 161 Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~~~~ls~li~eAi~~vg~~g~I~i~~ 240 (601)
||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+|.++|++|+++++.|++|+++|+.+++++|.|.+++
T Consensus 154 LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~ 233 (600)
T PLN03167 154 LIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233 (600)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEecc
Confidence 99999999999999999999999999999999999999997668999999999999999999999999999999999999
Q ss_pred CCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHHHHhcCCCEEEEcccccHHHH
Q 007488 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEAL 320 (601)
Q Consensus 241 G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~~~~~~~~lvI~a~~I~~~aL 320 (601)
|++++|++++++|++|+++|.+|||++++++|+++++||+|+++|++|++++++.++++.+.+.|+||||++++|++++|
T Consensus 234 g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL 313 (600)
T PLN03167 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEAL 313 (600)
T ss_pred CCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEecCeEEEEcCCCCh
Q 007488 321 ATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQ 400 (601)
Q Consensus 321 ~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~~~~~~ 400 (601)
++|+.|+++|.++|++||+|+||+.++++|+|||++|||++++++.|++++++++++||+|++|++.+++++++++.+++
T Consensus 314 ~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~ 393 (600)
T PLN03167 314 ATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQ 393 (600)
T ss_pred HHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcCccccccHHH
Q 007488 401 DAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480 (601)
Q Consensus 401 ~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvvpGGGa~e 480 (601)
+.+++|+.+|+.+++.+.++|++++|++|+++|++++++|+|||+|+.+++|+||+++||++++|+|+++|+|||||++|
T Consensus 394 ~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~e 473 (600)
T PLN03167 394 EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473 (600)
T ss_pred HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCeeeEecCCCcccchhhcccccc
Q 007488 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDP 560 (601)
Q Consensus 481 ~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~Gid~~~g~i~d~~e~gI~Dp 560 (601)
++|+.+|++++..+++.+|+.+++++++||+.||++||+|||+|+.+++++|+.++++++|||+.+|++.||++.|||||
T Consensus 474 l~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp 553 (600)
T PLN03167 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDP 553 (600)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeec
Confidence 99999999998878899998889999999999999999999999999999998666788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCC
Q 007488 561 TKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 593 (601)
Q Consensus 561 ~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~ 593 (601)
+.||+++|++|+++|++||++|++|+.+|++++
T Consensus 554 ~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~ 586 (600)
T PLN03167 554 TKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEP 586 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 999999999999999999999999998876544
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.2e-112 Score=947.54 Aligned_cols=526 Identities=53% Similarity=0.843 Sum_probs=509.2
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
++|+|.|| +++|+.+++|+..|+++|++||||+||||||+++.|+++|||||+|||++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~ 79 (545)
T PRK12852 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVAS 79 (545)
T ss_pred Ccchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHh
Confidence 47999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (601)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. ++.+||++|+++++.|+
T Consensus 80 ~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (545)
T PRK12852 80 KTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIG 159 (545)
T ss_pred hcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHH
Q 007488 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (601)
Q Consensus 221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (601)
+|+++|+.+++++|.|.++.|+++.+.+++++|+.|+++|.+|||++++++|+++++||+|+++|++|+++++++++++.
T Consensus 160 ~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~ 239 (545)
T PRK12852 160 KMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239 (545)
T ss_pred HHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH
Confidence 99999999999999999999998755559999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCcee
Q 007488 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (601)
Q Consensus 301 ~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (601)
+.+.|+||||++++|+++++++|+.|+++|.++|++||+|+||+.++++|+|||++|||++++++.|.+++++++++||+
T Consensus 240 i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR 319 (545)
T ss_pred HHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHH
Q 007488 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (601)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DA 460 (601)
|+.|++.++++++++++++++.+..|+++|+.+++++.+.|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (545)
T PRK12852 320 AKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDA 399 (545)
T ss_pred CcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCee
Q 007488 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (601)
Q Consensus 461 l~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~ 540 (601)
+|++++++++|+|||||++|++++.+|.+++.. .+.+| +++++|++||+.||++||+|||+|+.+++++|+..|++++
T Consensus 400 l~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~ 477 (545)
T PRK12852 400 LNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETF 477 (545)
T ss_pred HHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCe
Confidence 999999999999999999999999999998866 55555 8999999999999999999999999999999987788889
Q ss_pred eEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCC
Q 007488 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP 591 (601)
Q Consensus 541 Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~ 591 (601)
|||+.+|+++||++.|||||+.||+++|+.|+++|++||++|++|+.+|++
T Consensus 478 G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 478 GFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred eEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999999988876
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.9e-112 Score=944.20 Aligned_cols=530 Identities=58% Similarity=0.884 Sum_probs=511.5
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
|+|.|+|| +++++.++.|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.||+||+||+++|+
T Consensus 1 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~ 78 (542)
T PRK12849 1 MAKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVAS 78 (542)
T ss_pred CCccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHH
Confidence 36899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (601)
+||+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++|+++. +|.++|+||++++++++
T Consensus 79 ~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~ 158 (542)
T PRK12849 79 KTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHH
Q 007488 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (601)
Q Consensus 221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (601)
+++++|+..++++|.+.++.|++++|++++++|++|+++|.+|+|.++.++++++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~ 238 (542)
T PRK12849 159 ELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238 (542)
T ss_pred HHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH
Confidence 99999999999889888899999998669999999999999999999888999999999999999999999999999999
Q ss_pred HHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCcee
Q 007488 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (601)
Q Consensus 301 ~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (601)
+.+.|+||||++++|+++|+++|..|+++|.++|++||+|+++++++++|+|||.+|||++++++.+.+++++++++||+
T Consensus 239 i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK12849 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHH
Q 007488 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (601)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DA 460 (601)
|+.|+++++++++++++++++.+..|+++|+++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DA 398 (542)
T PRK12849 319 AKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDA 398 (542)
T ss_pred eeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCee
Q 007488 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (601)
Q Consensus 461 l~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~ 540 (601)
+|++++++++|||||||++|++++.+|++++ +.++.+| +++++|++||+.||++||+|||+|+.+++.+|+..+ +++
T Consensus 399 l~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~ 475 (542)
T PRK12849 399 LNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGF 475 (542)
T ss_pred HHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCc
Confidence 9999999999999999999999999999998 7777776 899999999999999999999999999999998764 689
Q ss_pred eEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCCCCCC
Q 007488 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 597 (601)
Q Consensus 541 Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~ 597 (601)
|||+.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|+.+|++..+ |+
T Consensus 476 G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~ 531 (542)
T PRK12849 476 GFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PG 531 (542)
T ss_pred ceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CC
Confidence 999999999999999999999999999999999999999999999998865433 54
No 4
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.1e-112 Score=944.01 Aligned_cols=532 Identities=61% Similarity=0.894 Sum_probs=510.4
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
|+|.+.|| +++|..+++|+..++++|++||||+||+|||+++.|+++|||||+||||+|+++||++|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~ 78 (542)
T PRK00013 1 MAKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVAS 78 (542)
T ss_pred CCchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 36899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (601)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls 158 (542)
T PRK00013 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHH
Q 007488 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (601)
Q Consensus 221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (601)
+++++|+..++++|.|.++.+....|.+++++|++|+++|.+|||.+++++++++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~ 238 (542)
T PRK00013 159 KLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238 (542)
T ss_pred HHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH
Confidence 99999999999888888865544444449999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCcee
Q 007488 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (601)
Q Consensus 301 ~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (601)
+.+.|+||||++++|+++++++|..|+++|+++|++||+|+||+.++++|+|||++||+++++++.|.+++++++++||+
T Consensus 239 i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK00013 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred eeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHH
Q 007488 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (601)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DA 460 (601)
|+.|++.++++++|+++++++.+..|+++|+++++++.+.|++++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Da 398 (542)
T PRK00013 319 AKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDA 398 (542)
T ss_pred eeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCee
Q 007488 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (601)
Q Consensus 461 l~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~ 540 (601)
+|++++++++|+|||||++|++++.+|+++ .+.++.+| +++++|++||+.||++||+|||+|+.+++.+|+..|++++
T Consensus 399 l~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~ 476 (542)
T PRK00013 399 LHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGY 476 (542)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCE
Confidence 999999999999999999999999999988 56667766 8999999999999999999999999999999987777789
Q ss_pred eEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCCCCCC
Q 007488 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 597 (601)
Q Consensus 541 Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~ 597 (601)
|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|..+|++++..|+
T Consensus 477 G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~ 533 (542)
T PRK00013 477 GYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPP 533 (542)
T ss_pred eEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999988766564
No 5
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-111 Score=942.47 Aligned_cols=535 Identities=55% Similarity=0.852 Sum_probs=510.1
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
|+|.|+|+ +++++.+++||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 57999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (601)
+||+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. +|.++|++|+++++.++
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHH
Q 007488 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (601)
Q Consensus 221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (601)
+++++|+..++++|.|.++.+....+++++++|++|+++|.+|+|+++.++++++++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999888888766655556669999999999999999999888899999999999999999999999999999
Q ss_pred HHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCcee
Q 007488 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (601)
Q Consensus 301 ~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (601)
+.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||++++++|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHH
Q 007488 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (601)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DA 460 (601)
|++|++.++++++++++++++.+..|+++++++++++.+.|++++|+||++||+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCee
Q 007488 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (601)
Q Consensus 461 l~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~ 540 (601)
++++++++++|||||||++|++++.+|+++ ...++.+| +++++|++||+.||++||+|||+|+.+++.+|+..+ .++
T Consensus 400 l~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~ 476 (544)
T PRK12850 400 LHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNF 476 (544)
T ss_pred HHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCc
Confidence 999999999999999999999999999998 55666665 899999999999999999999999999999998754 579
Q ss_pred eEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCC---CCCC----CCCC
Q 007488 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP---AMPA----GYGY 601 (601)
Q Consensus 541 Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~---~~~~----~~~~ 601 (601)
|||+.+|+++||++.|||||+.||.++|++|+++|++||++|++|+.+|++.| ++|+ |.||
T Consensus 477 G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~ 544 (544)
T PRK12850 477 GFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGMGGMGY 544 (544)
T ss_pred ceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999877532 3453 6665
No 6
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.4e-110 Score=932.33 Aligned_cols=524 Identities=55% Similarity=0.871 Sum_probs=503.3
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
|+|+|+|+ +++|+++++||..++++|++||||+||+|||+++.|+++|||||+||||+|+++||++++|++|++++|+
T Consensus 1 ~~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~ 78 (529)
T CHL00093 1 MSKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAAS 78 (529)
T ss_pred CCceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHH
Confidence 36899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (601)
+|++++||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.+||++|+++++.|+
T Consensus 79 ~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~ 158 (529)
T CHL00093 79 KTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVG 158 (529)
T ss_pred hcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCH-HHHHHHHH
Q 007488 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-RDLINVLE 299 (601)
Q Consensus 221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~-~~l~~~le 299 (601)
+|+++|+.+++++|.|.++.|+..++.+++++|++|+++|.+|||++++++|+++++||+|+++|++|+.. .+++++++
T Consensus 159 ~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~ 238 (529)
T CHL00093 159 SMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238 (529)
T ss_pred HHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHH
Confidence 99999999999999888877776666669999999999999999999999999999999999999999988 78999999
Q ss_pred HHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCce
Q 007488 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLG 379 (601)
Q Consensus 300 ~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG 379 (601)
++.+.+.||||++++|+++++++|+.|+++|+++|++||+|++|+.++++|+|||++|||++++++.|++++++++++||
T Consensus 239 ~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG 318 (529)
T CHL00093 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLG 318 (529)
T ss_pred HHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred eeeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHH
Q 007488 380 NASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459 (601)
Q Consensus 380 ~~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~D 459 (601)
+|++|++.++++++++ .++++.+..||++++++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~D 397 (529)
T CHL00093 319 QARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLED 397 (529)
T ss_pred cceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999998 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhh-cCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCC
Q 007488 460 ALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE-TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNH 538 (601)
Q Consensus 460 Al~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~-~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~ 538 (601)
|++++++++++|+|||||++|++||.+|+++++ +.++.+| +++++|++||+.||++||+|||+|+.+++++|+.. +.
T Consensus 398 Al~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~ 475 (529)
T CHL00093 398 AINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DF 475 (529)
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CC
Confidence 999999999999999999999999999999876 5777666 89999999999999999999999999999999764 55
Q ss_pred eeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCC
Q 007488 539 KYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 590 (601)
Q Consensus 539 ~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~ 590 (601)
++|||+.+|+++||++.|||||+.||.++|++|+++|++||++|++|+.+|+
T Consensus 476 ~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 476 EIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred CEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999999999999998774
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.3e-110 Score=934.61 Aligned_cols=528 Identities=51% Similarity=0.838 Sum_probs=508.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHH
Q 007488 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAA 140 (601)
Q Consensus 61 ~~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a 140 (601)
|+++++.|+ ++++..+++||..|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||.||+||+|++++|
T Consensus 12 ~~~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a 89 (555)
T PTZ00114 12 FKGKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVA 89 (555)
T ss_pred HhhhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHH
Confidence 346789999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHH
Q 007488 141 AKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEV 219 (601)
Q Consensus 141 ~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~l 219 (601)
++||+++||||||+||||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. +|.++|+||+++++.|
T Consensus 90 ~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l 169 (555)
T PTZ00114 90 SKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEI 169 (555)
T ss_pred HhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876 8999999999999999
Q ss_pred HHHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHH
Q 007488 220 GNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299 (601)
Q Consensus 220 s~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le 299 (601)
++++++|+.+++++|.|.+++|++++|++++++|++|+++|.+|+|++++++|+++++||+|+++|++|++++++.++++
T Consensus 170 ~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le 249 (555)
T PTZ00114 170 GSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILE 249 (555)
T ss_pred HHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeecc-CCccccCCCCCCc
Q 007488 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDE-VGLALDKVGKEVL 378 (601)
Q Consensus 300 ~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~-~~~~l~~~~~~~l 378 (601)
++.+.|+||||++++|+++++++|..|+++|.++|+|||+|++|++++++|+|||++|||+++++. .+..++++++++|
T Consensus 250 ~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~L 329 (555)
T PTZ00114 250 HAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSML 329 (555)
T ss_pred HHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999986 6777788999999
Q ss_pred eeeeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHH
Q 007488 379 GNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVE 458 (601)
Q Consensus 379 G~~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~ 458 (601)
|+|++|++.++++++++++++++.|+.|+++++.+++++.+.|++++|+||+++|+++++||+|||+|+.+++|++|+++
T Consensus 330 G~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~ 409 (555)
T PTZ00114 330 GSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIE 409 (555)
T ss_pred CCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC
Q 007488 459 DALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE--TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD 536 (601)
Q Consensus 459 DAl~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~--~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~ 536 (601)
||+|++++++++|||||||++|++++.+|++++. ..++.+| +++++|++||+.||++||+|||+|+.+++++|+..+
T Consensus 410 Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~ 488 (555)
T PTZ00114 410 DALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKK 488 (555)
T ss_pred HHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999875 4556665 899999999999999999999999999999997645
Q ss_pred CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCC
Q 007488 537 NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP 591 (601)
Q Consensus 537 ~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~ 591 (601)
++++|||+.+|++.||++.|||||+.||.++|++|+++|++||++|++|...|+.
T Consensus 489 ~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 489 DPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred CCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 6789999999999999999999999999999999999999999999999997765
No 8
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.7e-110 Score=930.76 Aligned_cols=527 Identities=57% Similarity=0.863 Sum_probs=504.6
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
|+|.+.|+ +++++.+++|+..++++|++||||+||+|||+++.|+++|||||+|||++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 57999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (601)
+||+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. +|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHH
Q 007488 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (601)
Q Consensus 221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (601)
+++++|+..++++|.+.++.+....+++++++|++|+++|.+|+|.++.++|+++++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888877765544444459999999999999999999998999999999999999999999999999999
Q ss_pred HHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCcee
Q 007488 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (601)
Q Consensus 301 ~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (601)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHH
Q 007488 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (601)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DA 460 (601)
|+.|++.+++|++++++++++.++.|+++++++++++.++|++++|++|+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCee
Q 007488 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (601)
Q Consensus 461 l~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~ 540 (601)
++++++++++|||||||++|++++.+|++++.. ++.+| +++++|++||+.||++||+|||+|+.+++++|+..| .++
T Consensus 400 l~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~ 476 (541)
T PRK12851 400 LHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGY 476 (541)
T ss_pred HHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCe
Confidence 999999999999999999999999999998865 56555 899999999999999999999999999999998765 479
Q ss_pred eEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCC
Q 007488 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 593 (601)
Q Consensus 541 Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~ 593 (601)
|||+.+|+++||++.|||||+.||.++|+.|+++|++||++|++|+.+|++.|
T Consensus 477 G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~ 529 (541)
T PRK12851 477 GFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEP 529 (541)
T ss_pred eeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999887643
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=7.4e-110 Score=925.55 Aligned_cols=521 Identities=61% Similarity=0.898 Sum_probs=503.3
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhc
Q 007488 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (601)
Q Consensus 64 k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~q 143 (601)
|.+.|+ +++|+.+++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 789999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHHHH
Q 007488 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (601)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~l 222 (601)
|+++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. +|.++|++|++++++++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHHHH
Q 007488 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (601)
Q Consensus 223 i~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~~~ 302 (601)
+++|+..++++|.|.++.|+..+|.+++++|++|+++|.+|+|.++++++++.++||+|+++|++|++++++.++++++.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999999988888898886766999999999999999999998999999999999999999999999999999999
Q ss_pred hcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeee
Q 007488 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (601)
Q Consensus 303 ~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~ 382 (601)
+.|+||||++++|+++++++|..|+++|+++|++||+|+||+.++++|+|||++|||++++++.|++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred EEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHH
Q 007488 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (601)
Q Consensus 383 ~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~ 462 (601)
.|++.++++++++++++++.+..|+++++++++++.+.|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCeeeE
Q 007488 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGY 542 (601)
Q Consensus 463 a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~Gi 542 (601)
++|+++++|||||||++|++++.+|++ ..+.++.+| +++++|++||+.||++||+|||+|+.+++++|+.. +.++||
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~ 476 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGF 476 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeE
Confidence 999999999999999999999999998 666667665 89999999999999999999999999999999865 335999
Q ss_pred ecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCC
Q 007488 543 NAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 589 (601)
Q Consensus 543 d~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~ 589 (601)
|+.+|++.||++.|||||+.||.++|++|+++|++||++|++|...|
T Consensus 477 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 477 NAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred eCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 99999999999999999999999999999999999999999998754
No 10
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=9.1e-110 Score=926.69 Aligned_cols=527 Identities=52% Similarity=0.832 Sum_probs=507.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhh
Q 007488 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (601)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~ 142 (601)
+|++.|| +++|+.+++|+..++++|++||||+||||||+++.|+|+|||||+||+++|++++|+||+||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHHH
Q 007488 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (601)
Q Consensus 143 qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (601)
||+++||||||+||||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.+||++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHHH
Q 007488 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (601)
Q Consensus 222 li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~~ 301 (601)
++++|+.+++++|.|.++.+++++|.+++++|++|+++|.+|||+++++.++.++++|+|+++|.+++++++++++++.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999999888888666699999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceee
Q 007488 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (601)
Q Consensus 302 ~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (601)
.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHH
Q 007488 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (601)
Q Consensus 382 ~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl 461 (601)
++|++++++++++++|++++.+.+|+++|+.+++++.+.|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCeee
Q 007488 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 541 (601)
Q Consensus 462 ~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~G 541 (601)
|++++++++|+|||||++|++++..|+++.. ..+. +++++++|++||+.||++||+|||+|+.+++.+|+..+++++|
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G 478 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIKT-KNDD-QKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYG 478 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CChH-HHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEe
Confidence 9999999999999999999999999998843 4444 4589999999999999999999999999999999876677899
Q ss_pred EecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCC
Q 007488 542 YNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 593 (601)
Q Consensus 542 id~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~ 593 (601)
||+.+|+++||++.|||||+.||+++|++|+++|++||++|++|..+|++.+
T Consensus 479 ~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~ 530 (546)
T PRK14104 479 FDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGG 530 (546)
T ss_pred EeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 9999999999999999999999999999999999999999999999887654
No 11
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1e-108 Score=914.93 Aligned_cols=518 Identities=62% Similarity=0.929 Sum_probs=502.8
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhc
Q 007488 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (601)
Q Consensus 64 k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~q 143 (601)
|+|.|| ++++..+++||..|+++|+|||||+||+|||++++|+++|||||+||+++|+++||.+|+||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 578999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHHHH
Q 007488 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (601)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~l 222 (601)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||++++++++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHHHH
Q 007488 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (601)
Q Consensus 223 i~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~~~ 302 (601)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|.+++++++++++||+|+++|+++++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999988889999999999999999999999999999999
Q ss_pred hcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeee
Q 007488 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (601)
Q Consensus 303 ~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~ 382 (601)
+.|+||||++++|+++++++|..|+++|.++|++||+|++|++++++|+|||++|||++++.+++.+++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHH
Q 007488 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (601)
Q Consensus 383 ~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~ 462 (601)
+|++++++++++.++++++.++.|+++++++++++.++|++++|+||+++|+++.|||+|||+|+.+++|++|+++||++
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCeeeE
Q 007488 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGY 542 (601)
Q Consensus 463 a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~Gi 542 (601)
++++++++|+|||||++|++++.+|++++. .++.+| +++++|++||+.||++||+|||+|+.+++++|+..|+ ++||
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~ 475 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGY 475 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeE
Confidence 999999999999999999999999999987 667666 8999999999999999999999999999999987666 8999
Q ss_pred ecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHh
Q 007488 543 NAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV 586 (601)
Q Consensus 543 d~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 586 (601)
|+.+|++.||++.|||||+.||.++|+.|+++|++||++|.+|.
T Consensus 476 d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 476 DAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred ECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 99999999999999999999999999999999999999999885
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-108 Score=864.81 Aligned_cols=531 Identities=55% Similarity=0.837 Sum_probs=517.8
Q ss_pred ccccccccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHH
Q 007488 55 ARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAK 134 (601)
Q Consensus 55 ~~~~~~~~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gak 134 (601)
.+.+| | +|+|+|| .++|..+++|++.||++|.+||||+|||++|.+++|.|+|||||+|++++++++|+.+|+||+
T Consensus 10 ~~~~r-~-ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gak 85 (550)
T KOG0356|consen 10 TKCVR-Y-AKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAK 85 (550)
T ss_pred ccccc-c-ccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccH
Confidence 33445 6 9999999 779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhc
Q 007488 135 LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSA 213 (601)
Q Consensus 135 Ll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~ 213 (601)
|++|++.++++.+||||||+++|++++..++.+-+.+|.+|..|++|+.++++.+++.|+++++||+.. ++.+||++|+
T Consensus 86 lvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSA 165 (550)
T KOG0356|consen 86 LVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISA 165 (550)
T ss_pred HHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHH
Q 007488 214 GNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD 293 (601)
Q Consensus 214 ~~~~~ls~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~ 293 (601)
|+|..+++++.+|+.++|++|+|+++.|.++.|++++++||.|++||++|||++++++.+++|++|++++.+++|+++++
T Consensus 166 ngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ 245 (550)
T KOG0356|consen 166 NGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQS 245 (550)
T ss_pred CCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCC-ccccC
Q 007488 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG-LALDK 372 (601)
Q Consensus 294 l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~-~~l~~ 372 (601)
+.|.||...+...||+|++++|+.++|.+|+.|++++.++|+|||+|+|||.+++.+.||+.+||++++.++.+ ++++.
T Consensus 246 ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~ 325 (550)
T KOG0356|consen 246 IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLED 325 (550)
T ss_pred HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 88999
Q ss_pred CCCCCceeeeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHH
Q 007488 373 VGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (601)
Q Consensus 373 ~~~~~lG~~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E 452 (601)
.++++||.+.++.+++++++++.+.+++.++++||+|++..++.+.++|++++++||+++|++++++|.|||.|+.|++|
T Consensus 326 ~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~e 405 (550)
T KOG0356|consen 326 AKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNE 405 (550)
T ss_pred CchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHH
Q 007488 453 KKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (601)
Q Consensus 453 ~~r~i~DAl~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL 532 (601)
++.+++||+|++++|+++|+|||||+++++|+..|.++.. ..+.+++.|++++.+||..|..+|++|||.|+..++.|+
T Consensus 406 kk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv 484 (550)
T KOG0356|consen 406 KKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKV 484 (550)
T ss_pred hhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHH
Confidence 9999999999999999999999999999999999999886 567788889999999999999999999999999999999
Q ss_pred HhcCCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCC
Q 007488 533 LSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 593 (601)
Q Consensus 533 ~~~~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~ 593 (601)
+ + ..+|||..+++|+||++.||+||++|.++||..|..+|++|++++.+|++.|+++.
T Consensus 485 ~-~--~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~~ 542 (550)
T KOG0356|consen 485 L-N--DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEEA 542 (550)
T ss_pred H-h--hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEecccccc
Confidence 8 3 38999999999999999999999999999999999999999999999999999884
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-93 Score=783.53 Aligned_cols=500 Identities=45% Similarity=0.660 Sum_probs=453.1
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (601)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~ 141 (601)
++++..|+ .++|..++.|++.|+++|++||||+||||||+++.|+|.|||||+|||++|+++||. |+|++++|.
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 37889999 999999999999999999999999999999999977999999999999999999998 999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH--HHHHHHHh-----hcC
Q 007488 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAV-----SAG 214 (601)
Q Consensus 142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~L~~va~t-----s~~ 214 (601)
+||+++||||||+|||+++||+++.+++.+|+||+.|++||++|.+.++++|+++++++++. +. +++.+ +.+
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~ 154 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSAN 154 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999865 22 44444 455
Q ss_pred ChhHHHHHHHHHHHhhcc-----CCceEE-ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC
Q 007488 215 NNYEVGNMIAEAMSKVGR-----KGVVTL-EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI 288 (601)
Q Consensus 215 ~~~~ls~li~eAi~~vg~-----~g~I~i-~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i 288 (601)
++++|++|+++|+.+++. ++++.+ +.|++.+|+ ++++||+|++||.+|||.++ +.++||+|+++|++|
T Consensus 155 ~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l 228 (524)
T COG0459 155 SDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKL 228 (524)
T ss_pred ChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEcccc
Confidence 678999999999999998 787766 466666666 99999999999999998543 678999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCc
Q 007488 289 TNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368 (601)
Q Consensus 289 ~~~~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~ 368 (601)
+..++.++ ++...+.+.++++++++++++++..++.|.+++.+++++|+.|+|+|.++++|+|++++|++++.+++++
T Consensus 229 ~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~- 306 (524)
T COG0459 229 EIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG- 306 (524)
T ss_pred ccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-
Confidence 99999988 8888888889999999999999999999999999999999999999999999999999999999998664
Q ss_pred cccCCCCCCceeeeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhcCCeEEEEEccCCh
Q 007488 369 ALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA-EQDYEREKLNERIAKLSGGVAVIQVGAQTE 447 (601)
Q Consensus 369 ~l~~~~~~~lG~~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~-~~~~~~~~l~er~a~l~~~~~tI~vrG~t~ 447 (601)
.....+|.|+.|...++.+....|.+. ..++++. .++|+++++++|.++ .+++|||+|||+|+
T Consensus 307 ----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate 370 (524)
T COG0459 307 ----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATE 370 (524)
T ss_pred ----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccH
Confidence 145678889988887777766666320 2234444 678999999999999 89999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChH
Q 007488 448 TELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGS 526 (601)
Q Consensus 448 ~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~ 526 (601)
.+++|+||++||||+++++++++| +|||||++|++++..|++++.+.++.++++++++|++||+.||++|++|||+|+.
T Consensus 371 ~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~ 450 (524)
T COG0459 371 VELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPI 450 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999 9999999999999999998544444345689999999999999999999999999
Q ss_pred HHHHHHHhcCC-CeeeEecCCCcc-cchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCC
Q 007488 527 VVSEKVLSSDN-HKYGYNAATGNY-EDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 592 (601)
Q Consensus 527 ~vi~kL~~~~~-~~~Gid~~~g~i-~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~ 592 (601)
+++.+|++.|+ +++|||+.++++ .||.+.|||||++||+++|++|+++|.+||++|++|.+.|+++
T Consensus 451 ~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 451 EVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 99999998776 569999999999 7799999999999999999999999999999999999999863
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-91 Score=774.19 Aligned_cols=448 Identities=24% Similarity=0.367 Sum_probs=411.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ ++|++++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC---cH-HHHHHHHhhcCCh------hHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE---DS-ELADVAAVSAGNN------YEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~---~~-~L~~va~ts~~~~------~~ls~ 221 (601)
||++||+++||+++.+++.+|+||..|++||++|.+.++++|++++++++ +. .|.+||++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 55 8999999998864 89999
Q ss_pred HHHHHHHhhccCC-c-------eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHH
Q 007488 222 MIAEAMSKVGRKG-V-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD 293 (601)
Q Consensus 222 li~eAi~~vg~~g-~-------I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~ 293 (601)
++++|+..+++++ . |...+|++++|+ ++++|++|+++|.+|+| +++++||+|++++++++..+.
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCCCcc
Confidence 9999999998875 1 233589999999 99999999999999875 567899999999999987754
Q ss_pred HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCC
Q 007488 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKV 373 (601)
Q Consensus 294 l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~ 373 (601)
-.+. ..-.+|||++++|+++++++|..| +|+||++ +++++|+|||++|||++++ +++++
T Consensus 239 ~~~~-----~~~~~lvi~~~~I~~~al~~l~~~------~I~av~~-----~~~~~l~~ia~~tGa~ii~-----~l~~~ 297 (484)
T cd03342 239 EVNS-----GFFYSVVINQKGIDPPSLDMLAKE------GILALRR-----AKRRNMERLTLACGGVAMN-----SVDDL 297 (484)
T ss_pred ccCc-----EEEEEEEEeCCCccHHHHHHHHHC------CCeEEEe-----CCHHHHHHHHHHhCCEEec-----ccccC
Confidence 2210 112469999999999999999988 4788884 5688999999999999999 68899
Q ss_pred CCCCceeeeEE---EEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHH
Q 007488 374 GKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETEL 450 (601)
Q Consensus 374 ~~~~lG~~~~v---~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l 450 (601)
++++||+|++| ++++++++++++|+++ +.+||+|||+|+.++
T Consensus 298 ~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l 342 (484)
T cd03342 298 SPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHTI 342 (484)
T ss_pred ChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHHH
Confidence 99999999999 5678899999988653 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHH
Q 007488 451 KEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529 (601)
Q Consensus 451 ~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi 529 (601)
+|.||+++||++++++++++| +||||||+|++|+.+|++++++.++.+| +++++|++||+.||++||+|||+|+.+++
T Consensus 343 ~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~l 421 (484)
T cd03342 343 TQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDVQETL 421 (484)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999 9999999999999999999877777766 89999999999999999999999999999
Q ss_pred HHHHhcC---CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCC
Q 007488 530 EKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI 588 (601)
Q Consensus 530 ~kL~~~~---~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~ 588 (601)
.+|+..| ++++|||+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++|+.+
T Consensus 422 ~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 422 VKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9998653 5679999999999999999999999999999999999999999999999764
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.3e-91 Score=776.62 Aligned_cols=457 Identities=25% Similarity=0.391 Sum_probs=420.2
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcc
Q 007488 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (601)
Q Consensus 65 ~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd 144 (601)
+..+| +++++.+++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||
T Consensus 9 ~~~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 82 (517)
T cd03343 9 QRTSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 82 (517)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 35566 789999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC--cH-HHHHHHHhhcCCh-----
Q 007488 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGNN----- 216 (601)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~~~----- 216 (601)
+++||||||+|+|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++ +. .|.+||++|++++
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999999999999999999999999999999999986 44 8999999998864
Q ss_pred -hHHHHHHHHHHHhhccCCc---------eEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeee
Q 007488 217 -YEVGNMIAEAMSKVGRKGV---------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (601)
Q Consensus 217 -~~ls~li~eAi~~vg~~g~---------I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~ 284 (601)
+.|++|+++|+.++++++. |++ ++|++++|| ++++|++|+++|.+|+| ++.++||+|+++
T Consensus 163 ~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl 234 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALL 234 (517)
T ss_pred HHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEE
Confidence 8999999999999987642 665 799999999 89999999999999875 456899999999
Q ss_pred ccc-------------CCCHHHHHHH-----------HHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecC
Q 007488 285 DKK-------------ITNARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (601)
Q Consensus 285 d~~-------------i~~~~~l~~~-----------le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~ 340 (601)
+++ +++++++.++ ++++.+.|+||||++++|+++++++|..+ +|++|+
T Consensus 235 ~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~-- 306 (517)
T cd03343 235 DAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR-- 306 (517)
T ss_pred eccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE--
Confidence 998 5777776654 55899999999999999999999999754 456777
Q ss_pred CcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEe---cCeEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 007488 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (601)
Q Consensus 341 ~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~ 417 (601)
++++++|+|||++|||++++ ++++++++.||+|++|++. +++++++++|+++
T Consensus 307 ---~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~----------------- 361 (517)
T cd03343 307 ---RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP----------------- 361 (517)
T ss_pred ---eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------
Confidence 56699999999999999998 6888999999999999864 7889999988653
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCCh
Q 007488 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN 496 (601)
Q Consensus 418 ~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~ 496 (601)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++...++
T Consensus 362 ------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 362 ------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred ------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 378999999999999999999999999999999999 9999999999999999999877777
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHH
Q 007488 497 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASS 573 (601)
Q Consensus 497 ~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e 573 (601)
.+| +++++|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.+|+++|++|+|
T Consensus 424 ~~~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e 502 (517)
T cd03343 424 REQ-LAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATE 502 (517)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHH
Confidence 766 79999999999999999999999999999999853 34679999999999999999999999999999999999
Q ss_pred HHHHHHchhHHHhC
Q 007488 574 VAKTFLMSDCVVVE 587 (601)
Q Consensus 574 ~a~~lL~iD~iI~~ 587 (601)
+|++||+||++|+.
T Consensus 503 ~a~~iL~id~ii~~ 516 (517)
T cd03343 503 AATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHhhhHhhhC
Confidence 99999999999965
No 16
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5e-91 Score=777.51 Aligned_cols=459 Identities=25% Similarity=0.340 Sum_probs=414.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
+++++.+++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHh-cccccC--cH-HHHHHHHhhcC------ChhHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~-~s~~v~--~~-~L~~va~ts~~------~~~~ls~ 221 (601)
||+|||+++||+++.+++++|+||+.|++||++|.+.+++.|++ +++|++ +. .|.++|+|+++ +.++|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899987 44 89999999876 3489999
Q ss_pred HHHHHHHhhcc---CCc---------eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCC
Q 007488 222 MIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (601)
Q Consensus 222 li~eAi~~vg~---~g~---------I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~ 289 (601)
++++|+..++. +|. |...+|++++|+ ++++|++|+++|.+| +|++.++||+|++++++++
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 224689999998 999999999999987 3677899999999999865
Q ss_pred C-------------HHH-----------HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 290 N-------------ARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 290 ~-------------~~~-----------l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
. +.+ +.++++++.+.|+||||++++|+++++++|..+ +|++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 3 222 235678888999999999999999999999887 567776 66
Q ss_pred chhHHHHHHHHhCCeEeeccCCc-cccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 007488 346 KSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (601)
Q Consensus 346 ~~~~L~~ia~~tG~~ii~~~~~~-~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~ 421 (601)
++++|+|||++|||+++++..++ ..+++++++||+|++|+ ++++++++|++|++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~---------------------- 361 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK---------------------- 361 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC----------------------
Confidence 78999999999999999964433 12345667899999998 77889999998765
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHH
Q 007488 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (601)
Q Consensus 422 ~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~ 500 (601)
+++|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++|+.+|+++++...+.+|
T Consensus 362 -------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 362 -------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred -------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 3689999999999999999999999999999999999 9999999999999999999887777776
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC-----------CCeeeEecCCCcccchhhcccccchHHHHHHHH
Q 007488 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-----------NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLE 569 (601)
Q Consensus 501 ~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~-----------~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~ 569 (601)
+++++|++||+.||++||+|||+|+.+++.+|+..| ++++|||+.+|++.||++.|||||+.+|+++|+
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~ 507 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLK 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHH
Confidence 899999999999999999999999999999997632 457999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhHHHhCCC
Q 007488 570 HASSVAKTFLMSDCVVVEIK 589 (601)
Q Consensus 570 ~A~e~a~~lL~iD~iI~~~~ 589 (601)
.|+|+|++|||||++|..+|
T Consensus 508 ~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 508 FATEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHHHhhcceeecCC
Confidence 99999999999999997765
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.6e-91 Score=775.10 Aligned_cols=456 Identities=25% Similarity=0.406 Sum_probs=418.1
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcc
Q 007488 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (601)
Q Consensus 65 ~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd 144 (601)
+-.+| .++++.+++||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||
T Consensus 10 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd 83 (519)
T TIGR02339 10 QRTKG--RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 83 (519)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHH
Confidence 34455 779999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCc--H-HHHHHHHhhcCCh-----
Q 007488 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGNN----- 216 (601)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-~L~~va~ts~~~~----- 216 (601)
+++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|+++++|++. . .|.++|+|+++++
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~ 163 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEV 163 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccch
Confidence 9999999999999999999999999999999999999999999999999999999875 3 7999999998754
Q ss_pred --hHHHHHHHHHHHhhcc---CCc-------eEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEe
Q 007488 217 --YEVGNMIAEAMSKVGR---KGV-------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (601)
Q Consensus 217 --~~ls~li~eAi~~vg~---~g~-------I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIl 282 (601)
++|++|+++|+.++++ +|. |++ .+|++++|| ++++|++|+++|.+|. |+..++||+|+
T Consensus 164 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~~-------m~~~i~n~kIl 235 (519)
T TIGR02339 164 TKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHPG-------MPKRVKNAKIA 235 (519)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCCC-------CccccCCCcEE
Confidence 8899999999999985 553 333 799999999 9999999999999873 67789999999
Q ss_pred eeccc-------------CCCHHHHHHHHH-----------HHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEee
Q 007488 283 LVDKK-------------ITNARDLINVLE-----------DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (601)
Q Consensus 283 l~d~~-------------i~~~~~l~~~le-----------~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk 338 (601)
+++++ +++++++.++++ .+++.|+||||++++|+++++++|..+ +|++|+
T Consensus 236 ll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~ 309 (519)
T TIGR02339 236 LLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR 309 (519)
T ss_pred EEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe
Confidence 99998 678887776655 899999999999999999999999754 456666
Q ss_pred cCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEe---cCeEEEEcCCCChhhHHHHHHHHHHHHH
Q 007488 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (601)
Q Consensus 339 ~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~r~~~l~~~l~ 415 (601)
++++++|+|||++|||++++ ++++++++.||+|++|++. +++++++++|+++
T Consensus 310 -----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------- 364 (519)
T TIGR02339 310 -----RVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP--------------- 364 (519)
T ss_pred -----cCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC---------------
Confidence 66799999999999999998 6888888999999999865 4889999988653
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcC
Q 007488 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (601)
Q Consensus 416 ~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~ 494 (601)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+|+.+|+++++.+
T Consensus 365 --------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 424 (519)
T TIGR02339 365 --------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKI 424 (519)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcC
Confidence 478999999999999999999999999999999999 99999999999999999998777
Q ss_pred ChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHH
Q 007488 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHA 571 (601)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A 571 (601)
.+.+| +++++|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.||+++|++|
T Consensus 425 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 503 (519)
T TIGR02339 425 GGREQ-LAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSA 503 (519)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHH
Confidence 77776 79999999999999999999999999999999853 346799999999999999999999999999999999
Q ss_pred HHHHHHHHchhHHHh
Q 007488 572 SSVAKTFLMSDCVVV 586 (601)
Q Consensus 572 ~e~a~~lL~iD~iI~ 586 (601)
+|+|++||++|++|+
T Consensus 504 ~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 504 TEAATMILRIDDVIA 518 (519)
T ss_pred HHHHHHHHhHhHHhh
Confidence 999999999999985
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-90 Score=772.80 Aligned_cols=456 Identities=23% Similarity=0.355 Sum_probs=413.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
++++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhccccc---CcH-HHHHHHHhhcCC------hhHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV---EDS-ELADVAAVSAGN------NYEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v---~~~-~L~~va~ts~~~------~~~ls~ 221 (601)
||+|||+++||+++.+++++|+||..|++||++|.+.++++|+++++++ .+. .|.++|++++++ +++|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999765 344 899999998754 789999
Q ss_pred HHHHHHHhhccCCc------eEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCH--
Q 007488 222 MIAEAMSKVGRKGV------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-- 291 (601)
Q Consensus 222 li~eAi~~vg~~g~------I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~-- 291 (601)
++++|+..+++++. |.+ ..|++.+|+ ++++|++|+++|.+|+| +++++||+|++++++++..
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~~-------~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPDM-------PRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCCC-------ceeccCceEEEEeCCCCCCcc
Confidence 99999999987653 332 578999998 99999999999999875 5578999999999986433
Q ss_pred -----------HHH-----------HHHHHHHHhcC-------CC---EEEEcccccHHHHHHHHHhhhcccceEEEeec
Q 007488 292 -----------RDL-----------INVLEDAIRGA-------YP---ILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (601)
Q Consensus 292 -----------~~l-----------~~~le~~~~~~-------~~---lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~ 339 (601)
+++ ...++++.+.+ ++ ||+++++|++.++++|..+ +|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 222 34566666654 14 9999999999999999886 568777
Q ss_pred CCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEE---EEecCeEEEEcCCCChhhHHHHHHHHHHHHHh
Q 007488 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (601)
Q Consensus 340 ~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v---~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~ 416 (601)
++++.+|+|||++|||+++. ++++++++.||+|++| +++++++++|++|+++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 45588999999999999998 6889999999999999 5778899999988653
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCC
Q 007488 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (601)
Q Consensus 417 ~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~ 495 (601)
++|||+|||+|+.+++|++|+++||++++++++++| +||||||+|++|+.+|++++++.+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999999 999999999999999999987777
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCC---CeeeEecCCCcccchhhcccccchHHHHHHHHHHH
Q 007488 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDN---HKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHAS 572 (601)
Q Consensus 496 ~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~---~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~ 572 (601)
+.+| +++++|++||+.||++||+|||+|+.+++.+|+..|+ .++|||+.+|+++||++.|||||+.+|+++|++|+
T Consensus 432 ~~~~-~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~ 510 (531)
T TIGR02347 432 GKAK-LGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSAT 510 (531)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHH
Confidence 7776 7999999999999999999999999999999986543 57999999999999999999999999999999999
Q ss_pred HHHHHHHchhHHHhCCCCC
Q 007488 573 SVAKTFLMSDCVVVEIKEP 591 (601)
Q Consensus 573 e~a~~lL~iD~iI~~~~~~ 591 (601)
++|++|||||++|+.+|+.
T Consensus 511 e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 511 VIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred HHHHHHHhHHHHHhCcccc
Confidence 9999999999999987764
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-90 Score=773.20 Aligned_cols=461 Identities=24% Similarity=0.338 Sum_probs=415.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
+++|+.+++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhc-ccccC--cH-HHHHHHHhhcC------ChhHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQM-SKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~-s~~v~--~~-~L~~va~ts~~------~~~~ls~ 221 (601)
||+|||+++||+++.+++++|+||+.|++||+.|.+.+++.|+++ ++|++ +. +|.++|+++++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999975 88987 44 89999999987 5789999
Q ss_pred HHHHHHHhhc---cCCc-------eE--EecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCC
Q 007488 222 MIAEAMSKVG---RKGV-------VT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (601)
Q Consensus 222 li~eAi~~vg---~~g~-------I~--i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~ 289 (601)
++++|+..++ .+|. |. .++|++++|+ ++++|++|+++|.+| +|+++++||+|++++++++
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 9999999996 2342 22 2799999888 999999999999886 4778899999999999864
Q ss_pred CHH-------------H-----------HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 290 NAR-------------D-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 290 ~~~-------------~-----------l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
..+ + +.+.++.+.+.|++|||++++|++.++++|..+ ++++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~------~I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEA------GAMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEe-----cC
Confidence 332 1 235677888999999999999999999999887 457776 56
Q ss_pred chhHHHHHHHHhCCeEeeccCCc-cccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 007488 346 KSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (601)
Q Consensus 346 ~~~~L~~ia~~tG~~ii~~~~~~-~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~ 421 (601)
++++|+|||++|||+++++..++ ..++++++.||+|++|+ +++++|++|++++++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 68999999999999999975444 23456677899999998 788899999987653
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHH
Q 007488 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (601)
Q Consensus 422 ~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~ 500 (601)
.+|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++|+.+|+++++...+.+|
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 489999999999999999999999999999999999 9999999999999999998777766666
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC-----------CCeeeEecCCCcccchhhcccccchHHHHHHHH
Q 007488 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-----------NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLE 569 (601)
Q Consensus 501 ~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~-----------~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~ 569 (601)
+++++|++||+.||++||+|||+|+.+++.+|+..| +.++|||+.+|++.||++.|||||+.+|.++|+
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~ 511 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLK 511 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHH
Confidence 899999999999999999999999999999997632 347999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhHHHhCCCCC
Q 007488 570 HASSVAKTFLMSDCVVVEIKEP 591 (601)
Q Consensus 570 ~A~e~a~~lL~iD~iI~~~~~~ 591 (601)
.|+|+|++||+||++|..+|++
T Consensus 512 ~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 512 FATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred HHHHHHHHHHhhhhhhhcCCCC
Confidence 9999999999999999887643
No 20
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.4e-90 Score=768.46 Aligned_cols=456 Identities=23% Similarity=0.336 Sum_probs=413.8
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcc
Q 007488 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (601)
Q Consensus 65 ~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd 144 (601)
+..|| +++++.++.+|..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||
T Consensus 17 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~ 90 (526)
T cd03339 17 KRLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90 (526)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhh
Confidence 58888 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC----cH-HHHHHHHhhcCC----
Q 007488 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE----DS-ELADVAAVSAGN---- 215 (601)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~----~~-~L~~va~ts~~~---- 215 (601)
+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +. .|.++|++|++.
T Consensus 91 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~ 170 (526)
T cd03339 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170 (526)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchh
Confidence 999999999999999999999999999999999999999999999999999999986 23 799999998764
Q ss_pred --hhHHHHHHHHHHHhhccC-------Cc--eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeee
Q 007488 216 --NYEVGNMIAEAMSKVGRK-------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (601)
Q Consensus 216 --~~~ls~li~eAi~~vg~~-------g~--I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~ 284 (601)
.+.|++++++|+..+... .. |...+|++++|| ++++|++|+++|.+|+|+ ..++||||+++
T Consensus 171 ~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m~-------~~~~n~kI~ll 242 (526)
T cd03339 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQMP-------KEVKDAKIAIL 242 (526)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCCC-------ceecCCCEEEE
Confidence 378999999999988531 12 333699999999 999999999999999763 45678888888
Q ss_pred ccc-------------CCCHHH-----------HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecC
Q 007488 285 DKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (601)
Q Consensus 285 d~~-------------i~~~~~-----------l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~ 340 (601)
+++ ++++++ +.++++++.+.|+||||++++|+++++++|..| +|.+|+++
T Consensus 243 ~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------~I~av~~v 316 (526)
T cd03339 243 TCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQN------GLPAVRWV 316 (526)
T ss_pred EecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHC------CCEEEEeC
Confidence 754 456655 567799999999999999999999999999887 45788864
Q ss_pred CcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE---e--cCeEEEEcCCCChhhHHHHHHHHHHHHH
Q 007488 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---T--KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (601)
Q Consensus 341 ~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~--~~~~~~i~~~~~~~~i~~r~~~l~~~l~ 415 (601)
++.+|+|||++|||++++ ++++++++.||+|+.|+. + +++++++++|+++
T Consensus 317 -----~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~--------------- 371 (526)
T cd03339 317 -----GGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS--------------- 371 (526)
T ss_pred -----CHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC---------------
Confidence 478899999999999998 688999999999999973 3 4688999888653
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcC
Q 007488 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (601)
Q Consensus 416 ~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~ 494 (601)
+.+||+|||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|+++++.+
T Consensus 372 --------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 431 (526)
T cd03339 372 --------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKC 431 (526)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccC
Confidence 589999999999999999999999999999999998 99999999999999999998777
Q ss_pred ChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC----CCeeeEecCCCcccchhhcccccchHHHHHHHHH
Q 007488 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEH 570 (601)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~----~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~ 570 (601)
.+.+| +++++|++||+.||++||+|||+|+.+++++|+..| +.++|||+.+|++.||++.|||||+.||+++|++
T Consensus 432 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~ 510 (526)
T cd03339 432 SGIEQ-YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILL 510 (526)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHH
Confidence 77765 899999999999999999999999999999997433 4579999999999999999999999999999999
Q ss_pred HHHHHHHHHchhHHHh
Q 007488 571 ASSVAKTFLMSDCVVV 586 (601)
Q Consensus 571 A~e~a~~lL~iD~iI~ 586 (601)
|+++|++||+||++|.
T Consensus 511 A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 511 ATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHhhhceecC
Confidence 9999999999999874
No 21
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-90 Score=767.23 Aligned_cols=459 Identities=22% Similarity=0.317 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
.++++.++.+|..++++|++||||+||||||+++.|+++|||||+|||++|+++||+ ++|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC--cH-HHHHHHHhhcC------ChhHHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~ls~l 222 (601)
||++||+++|++++.+++++|+||..|++||++|.+.++++|+++++|++ +. +|.++|+||++ ++++|++|
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 89999999988 56889999
Q ss_pred HHHHHHhhccCCc----------eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC----
Q 007488 223 IAEAMSKVGRKGV----------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (601)
Q Consensus 223 i~eAi~~vg~~g~----------I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i---- 288 (601)
+++|+.++++++. |.+++|++++|+ ++++|++|+++|.+|++ +|..++||+++++++++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999998763 555799999999 99999999999999752 24457788888877653
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchh
Q 007488 289 ---------TNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (601)
Q Consensus 289 ---------~~~-----------~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~ 348 (601)
+++ +++.++++++.+.|+||||++++|++++++.+..+.+++ .+|+||+ +++++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~ 309 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIERE 309 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHH
Confidence 233 345677999999999999999999555555555554443 4889988 67799
Q ss_pred HHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEe---cCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 007488 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (601)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~ 425 (601)
+|+|||++|||++++ ++++++++.||+|++|++. ++.++++.++.+
T Consensus 310 ~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 999999999999999 6888999999999999863 557888887653
Q ss_pred HHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 007488 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (601)
Q Consensus 426 l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~ 504 (601)
++++|||+|||+|+.+++|+||+++||++++++++++| +||||||+|++|+.+|++++++..+.+| ++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~ 429 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVR 429 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHH
Confidence 14689999999999999999999999999999999999 9999999999999999999877777666 8999
Q ss_pred HHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHch
Q 007488 505 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMS 581 (601)
Q Consensus 505 ~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~i 581 (601)
+|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999864 3568999999999999999999999999999999999999999999
Q ss_pred hHHHhC
Q 007488 582 DCVVVE 587 (601)
Q Consensus 582 D~iI~~ 587 (601)
|++|+.
T Consensus 510 D~ii~~ 515 (515)
T cd03338 510 DDIVLA 515 (515)
T ss_pred chhhcC
Confidence 999863
No 22
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-89 Score=764.66 Aligned_cols=456 Identities=21% Similarity=0.324 Sum_probs=416.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
.+++..++.+|..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+||+++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 678899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCc------H-HHHHHHHhhcC------ChhH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED------S-ELADVAAVSAG------NNYE 218 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~------~-~L~~va~ts~~------~~~~ 218 (601)
||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++ . .|.++|+++++ ++++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999876 5789
Q ss_pred HHHHHHHHHHhhccCC---ce--EEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC-----
Q 007488 219 VGNMIAEAMSKVGRKG---VV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI----- 288 (601)
Q Consensus 219 ls~li~eAi~~vg~~g---~I--~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i----- 288 (601)
|++|+++|+.++++++ .| ...+|++++|+ ++++|++|+++|.+|+|.+ +++.++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFEQ----QPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCcccccc----CCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 33 23589999999 8999999999999998744 55679999999999873
Q ss_pred --------CCHHH-----------HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhH
Q 007488 289 --------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (601)
Q Consensus 289 --------~~~~~-----------l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~ 349 (601)
+++.+ +.+.++.+.+.|+++|++++.|++.++++|..+ +|++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~------~I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR------DIFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eCCHHH
Confidence 45443 456688889999999999999999999999887 456665 556899
Q ss_pred HHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 007488 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (601)
Q Consensus 350 L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l 426 (601)
|+|||++|||++++ ++++++++.||+|++|+ ++++++++|.+|..+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999998 68899999999999998 567899999988643
Q ss_pred HHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 007488 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (601)
Q Consensus 427 ~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~ 505 (601)
..+||++||+|+.+++|.||+++||++++++++++| +||||||+|++++.+|++++++..+.+| +++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~-~~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LVINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHHH
Confidence 488999999999999999999999999999999998 9999999999999999999877767666 79999
Q ss_pred HHHHHhHHHHHHHHHcCCChHHHHHHHHhcC---C-CeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHch
Q 007488 506 VKRALCYPLKLIAKNAGVNGSVVSEKVLSSD---N-HKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMS 581 (601)
Q Consensus 506 ~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~---~-~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~i 581 (601)
|++||+.||++|++|||+|+.+++.+|+..| + .++|||+.+|++.||++.|||||+.||+++|+.|+|+|++||++
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999998743 3 57999999999999999999999999999999999999999999
Q ss_pred hHHHhCC
Q 007488 582 DCVVVEI 588 (601)
Q Consensus 582 D~iI~~~ 588 (601)
|++|..+
T Consensus 514 d~ii~~~ 520 (522)
T cd03340 514 DETIKNP 520 (522)
T ss_pred hhheeCC
Confidence 9999774
No 23
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-89 Score=763.70 Aligned_cols=455 Identities=21% Similarity=0.300 Sum_probs=414.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
++++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCc--H-HHHHHHHhhcCC------hhHHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGN------NYEVGNM 222 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-~L~~va~ts~~~------~~~ls~l 222 (601)
||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|++. . .|.++|+|+++. ++.|++|
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999873 3 799999887543 6899999
Q ss_pred HHHHHHhhccCC-----------ceEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCC
Q 007488 223 IAEAMSKVGRKG-----------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (601)
Q Consensus 223 i~eAi~~vg~~g-----------~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~ 289 (601)
+++|+..+++++ .|++ .+|++++|| ++++|++|++++.++ +|+.+++||+|++++++++
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998653 1333 579999998 899999999997764 4777899999999999864
Q ss_pred C-------------HHHHHHH-----------HHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 290 N-------------ARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 290 ~-------------~~~l~~~-----------le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
. ++++.++ ++++.+.|++|||+++.|++.++++|..+ +|++++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 4 4566554 44888899999999999999999988764 567766 77
Q ss_pred chhHHHHHHHHhCCeEeeccCCccccCCCCCCcee-eeEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 007488 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (601)
Q Consensus 346 ~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~ 421 (601)
++++|+|||++|||++++ ++++++++.+|+ |+.|++ +++++++|++|+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 799999999999999999 688899999999 998876 56889999988653
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHH
Q 007488 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (601)
Q Consensus 422 ~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~ 500 (601)
..|||+|||+|+.+++|.||+++||+++++++++++ +||||||+|++|+.+|+++++++++.+|
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 489999999999999999999999999999999996 9999999999999999999877778776
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC----CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHH
Q 007488 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAK 576 (601)
Q Consensus 501 ~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~----~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~ 576 (601)
+++++|++||+.||++||+|||+|+.+++++|+..| +.++|||+.+|+++||++.|||||+.||+++|++|+|+|+
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~ 510 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESAC 510 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998643 4679999999999999999999999999999999999999
Q ss_pred HHHchhHHHhCCCC
Q 007488 577 TFLMSDCVVVEIKE 590 (601)
Q Consensus 577 ~lL~iD~iI~~~~~ 590 (601)
+||++|++|...|+
T Consensus 511 ~iL~id~ii~~~~~ 524 (525)
T TIGR02344 511 MLLRIDDIVSGVKK 524 (525)
T ss_pred HHHhhhHHhhcCCC
Confidence 99999999988763
No 24
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-88 Score=755.19 Aligned_cols=454 Identities=23% Similarity=0.332 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC--CCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~--~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GD 149 (601)
+++++.++.||..|+++|+|||||+||+|||+++ +|+++|||||+||+++|+++||. |+||+++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 6799999999999999999999999999999998 59999999999999999999997 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC-----cH-HHHHHHHhhcC------Chh
Q 007488 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG------NNY 217 (601)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~-~L~~va~ts~~------~~~ 217 (601)
||||+|||+++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +. +|.++|+|+++ +++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999984 12 79999997653 468
Q ss_pred HHHHHHHHHHHhhccC---Cc--eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCC---
Q 007488 218 EVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (601)
Q Consensus 218 ~ls~li~eAi~~vg~~---g~--I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~--- 289 (601)
+|++|+++|+.+++.. .. +...+|++++|+ ++++|+++++++.++ +++.++||+|++++++++
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCccc
Confidence 9999999999999632 22 334689999999 899999999986432 467899999999999754
Q ss_pred -----------CHHHH-----------HHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcch
Q 007488 290 -----------NARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (601)
Q Consensus 290 -----------~~~~l-----------~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~ 347 (601)
+++++ .+.++.+.+.|++++++++.|++.++++|..+ +|++|++|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 55554 23577889999999999999999999998776 679999776 5
Q ss_pred hHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 007488 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (601)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~ 424 (601)
.+|+|||++|||++++ ++++++++.||+|++|+. +++++++|.+|++
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 357 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA------------------------- 357 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCC-------------------------
Confidence 6799999999999998 688999999999999973 5778999998764
Q ss_pred HHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHH
Q 007488 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (601)
Q Consensus 425 ~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~ 503 (601)
++.|||+|||+|+.+++|.||+++||++++++++++| +||||||+|++|+.+|++++++..+.+| +++
T Consensus 358 ----------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 358 ----------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred ----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 3589999999999999999999999999999999998 9999999999999999999887777776 799
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHc
Q 007488 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLM 580 (601)
Q Consensus 504 ~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~ 580 (601)
++|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++||+
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 506 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILR 506 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864 356799999999999999999999999999999999999999999
Q ss_pred hhHHHhCCCC
Q 007488 581 SDCVVVEIKE 590 (601)
Q Consensus 581 iD~iI~~~~~ 590 (601)
+|++|+.+|+
T Consensus 507 id~ii~~~~~ 516 (517)
T cd03336 507 VDDIIKCAPR 516 (517)
T ss_pred HhHHhhcCCC
Confidence 9999998763
No 25
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.2e-89 Score=758.83 Aligned_cols=451 Identities=23% Similarity=0.360 Sum_probs=409.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
.++++.++++|..|+++|++||||+||||||+++.|+++|||||+||+++|+++||+ |+||+++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCc----H-HHHHHHHhhcCC------hhHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN------NYEVG 220 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~----~-~L~~va~ts~~~------~~~ls 220 (601)
||++||+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++. . .|.++|+++++. .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3 799999998763 47799
Q ss_pred HHHHHHHHhhccC--C-----c--eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeeccc----
Q 007488 221 NMIAEAMSKVGRK--G-----V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK---- 287 (601)
Q Consensus 221 ~li~eAi~~vg~~--g-----~--I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~---- 287 (601)
+++++|+..+... + . |...+|++++|+ ++++|++|+++|.+|+| ++.++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~m-------~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQM-------PKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCCC-------CeeecCCcEEEEEeecccc
Confidence 9999999988531 1 2 333699999999 99999999999999875 445678888888754
Q ss_pred ---------CCCHHHH-----------HHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcch
Q 007488 288 ---------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (601)
Q Consensus 288 ---------i~~~~~l-----------~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~ 347 (601)
+++++++ .++++++.+.|+||||++++|+++++++|..| ++.+|+++ ++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~------~i~~v~~~-----~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQN------DLPAVRWV-----GG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHC------CcEEEEcC-----CH
Confidence 5666665 67799999999999999999999999999988 45677744 47
Q ss_pred hHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE---ec--CeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHH
Q 007488 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK--DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422 (601)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~--~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~ 422 (601)
.+|+|||++|||++++ ++++++++.||+|++|+. +. ++++++++|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 7899999999999999 688999999999999973 33 578999888753
Q ss_pred HHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHH
Q 007488 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKV 501 (601)
Q Consensus 423 ~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~ 501 (601)
.++||+|||+|+.+++|.||+++||+++++++++++ +||||||+|++|+++|++++.++++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 489999999999999999999999999999999996 9999999999999999999887778776 8
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC----CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHH
Q 007488 502 GADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKT 577 (601)
Q Consensus 502 ~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~----~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~ 577 (601)
++++|++||+.||++||+|||+|+.+++++|+..| +.++|||+.+|+++||++.|||||+.||+++|+.|+|+|++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~ 521 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRM 521 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997532 45799999999999999999999999999999999999999
Q ss_pred HHchhHHHh
Q 007488 578 FLMSDCVVV 586 (601)
Q Consensus 578 lL~iD~iI~ 586 (601)
||++|++|.
T Consensus 522 iL~id~ii~ 530 (532)
T TIGR02343 522 ILKIDDVIS 530 (532)
T ss_pred HHhHhhhcc
Confidence 999999985
No 26
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-89 Score=761.26 Aligned_cols=462 Identities=23% Similarity=0.324 Sum_probs=413.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
++++..|+.+|..|+++|++||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 458899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhccc-ccCc---H-HHHHHHHhhcC-----ChhHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVED---S-ELADVAAVSAG-----NNYEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~-~v~~---~-~L~~va~ts~~-----~~~~ls~ 221 (601)
||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++ ++++ . +|.++++++++ ++++|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7744 3 79999888763 4899999
Q ss_pred HHHHHHHhhccCC--c-----eEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC----
Q 007488 222 MIAEAMSKVGRKG--V-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (601)
Q Consensus 222 li~eAi~~vg~~g--~-----I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i---- 288 (601)
|+++|+.++++++ . |.+ .+|++++|+ ++++|++|++++. .+++.++||||+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998754 2 222 489999998 9999999999842 135578899999988763
Q ss_pred ---------CCHH-----------HHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchh
Q 007488 289 ---------TNAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (601)
Q Consensus 289 ---------~~~~-----------~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~ 348 (601)
+++. ++.++++++.+.|+||||++++|++.++++|..+ +|+||++|+ ..
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~-----~~ 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPS-----KF 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCC-----HH
Confidence 3433 3466799999999999999999999999988754 789999887 45
Q ss_pred HHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 007488 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (601)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~ 425 (601)
+|+|||++|||++++ +++++++++||+|++|++ +++++.++.++..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 799999999999998 688888999999999985 4567888877542
Q ss_pred HHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 007488 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (601)
Q Consensus 426 l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~ 504 (601)
.++++||+|||+|+.+++|+||+++||++++++++++| +||||||+|++|+.+|+++++++.+.+| ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25789999999999999999999999999999999999 9999999999999999999877777666 8999
Q ss_pred HHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCc--ccchhhcccccchHHHHHHHHHHHHHHHHHH
Q 007488 505 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGN--YEDLMAAGIIDPTKVVRCCLEHASSVAKTFL 579 (601)
Q Consensus 505 ~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~--i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL 579 (601)
+|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|+ ++||++.|||||+.||+++|++|+|+|++||
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 511 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVL 511 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999865 3567999999999 5999999999999999999999999999999
Q ss_pred chhHHHhCCCCCCCCCCCC
Q 007488 580 MSDCVVVEIKEPEPAMPAG 598 (601)
Q Consensus 580 ~iD~iI~~~~~~~~~~~~~ 598 (601)
+||++|..+|...+.+|++
T Consensus 512 ~id~ii~~~~~~~~~~~~~ 530 (531)
T TIGR02346 512 RVDQIIMAKPAGGPKPPQG 530 (531)
T ss_pred hhhHhhccCCCCCCCCCCC
Confidence 9999999988777777763
No 27
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.7e-89 Score=758.97 Aligned_cols=459 Identities=21% Similarity=0.317 Sum_probs=408.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
.+++..++.+|..|+++|++||||+||||||+++.|+++|||||+|||++|+++||+ ++|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 567899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC--cH-HHHHHHHhhcCC------hhHHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~ls~l 222 (601)
||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|++ +. .|.++|+||++. .++|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 799999998763 4678999
Q ss_pred HHHHHHhhccC---Cc-----eEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC----
Q 007488 223 IAEAMSKVGRK---GV-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (601)
Q Consensus 223 i~eAi~~vg~~---g~-----I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i---- 288 (601)
+++|+..++++ +. |.+ ..|++++|+ ++++|++|+++|.++ .+|++.++||+|+++++++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEecCCCCCc
Confidence 99999999762 32 333 489999999 899999999999874 2366678899999988764
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchh
Q 007488 289 ---------TNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (601)
Q Consensus 289 ---------~~~-----------~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~ 348 (601)
+++ +++.++++++.+.|+|||||+++|++++++.+..+.+.+ .+|+||+ +++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~ 310 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIERE 310 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHH
Confidence 232 235668899999999999999999555555555444444 4889988 66799
Q ss_pred HHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEE-E--ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 007488 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV-L--TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (601)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~-i--~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~ 425 (601)
+|+|||++|||++++ ++++++++.||+|+.|+ + +++.++++.++.+
T Consensus 311 ~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~-------------------------- 359 (517)
T TIGR02342 311 EVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN-------------------------- 359 (517)
T ss_pred HHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC--------------------------
Confidence 999999999999999 68889999999999998 3 3556777877643
Q ss_pred HHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 007488 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (601)
Q Consensus 426 l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~ 504 (601)
+++++||+|||+|+.+++|.+|+++||+++++++++++ +||||||+|++++.+|++++++.++.+| ++++
T Consensus 360 --------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~ 430 (517)
T TIGR02342 360 --------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVR 430 (517)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHH
Confidence 24689999999999999999999999999999999985 9999999999999999999877777776 7999
Q ss_pred HHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHch
Q 007488 505 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMS 581 (601)
Q Consensus 505 ~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~i 581 (601)
+|++||+.||++||+|||+|+.+++++|+.. ++.++|||+.+|+++||++.|||||+.||+++|++|+++|++||++
T Consensus 431 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 431 AFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999864 3568999999999999999999999999999999999999999999
Q ss_pred hHHHhC
Q 007488 582 DCVVVE 587 (601)
Q Consensus 582 D~iI~~ 587 (601)
|++|..
T Consensus 511 D~ii~~ 516 (517)
T TIGR02342 511 DDIVFT 516 (517)
T ss_pred cceeec
Confidence 999875
No 28
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-88 Score=757.30 Aligned_cols=458 Identities=21% Similarity=0.313 Sum_probs=414.6
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhccc
Q 007488 66 LHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145 (601)
Q Consensus 66 i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~ 145 (601)
-..| .+++..|+.+|..|+++|++||||+||||||+++.| ++|||||+|||++|+++||+ |+|++++|++||+
T Consensus 13 ~~~~--~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~ 85 (522)
T TIGR02345 13 TSQG--KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDS 85 (522)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHH
Confidence 3444 679999999999999999999999999999999999 99999999999999999999 9999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC-----cH-HHHHHHHhhcC-----
Q 007488 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG----- 214 (601)
Q Consensus 146 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~-~L~~va~ts~~----- 214 (601)
++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++|++ +. +|.++|+++++
T Consensus 86 ~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~ 165 (522)
T TIGR02345 86 EVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIA 165 (522)
T ss_pred HhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999987 33 79999999976
Q ss_pred -ChhHHHHHHHHHHHhhccC-------CceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecc
Q 007488 215 -NNYEVGNMIAEAMSKVGRK-------GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDK 286 (601)
Q Consensus 215 -~~~~ls~li~eAi~~vg~~-------g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~ 286 (601)
++++|++++++|+.+++++ ++++ .+|++++|+ ++++|++|+++|.+|+|.+ +++.++||+|+++|+
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~k-i~Ggs~~ds-~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 166 HEKEFFSKMIVDAVLQLDIDDLDLKLIGVKK-VQGGSLQDS-VLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNV 239 (522)
T ss_pred chHHHHHHHHHHHHHHHhhccCChhHheEEe-ecCCCHHhc-ceecceEEecccCcccccc----CCceeccceEEEEec
Confidence 5799999999999999865 2334 489999999 7999999999999998754 567799999999998
Q ss_pred cCC-------------CHHHH-----------HHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCc
Q 007488 287 KIT-------------NARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 342 (601)
Q Consensus 287 ~i~-------------~~~~l-----------~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~ 342 (601)
+++ +++++ .+.++.+.+.|+++|+++++|++.++++|..+ +|++++
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~---- 309 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG---- 309 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe----
Confidence 753 33332 34567788889999999999999999999876 556665
Q ss_pred CCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhh
Q 007488 343 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419 (601)
Q Consensus 343 g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~ 419 (601)
++...++++|+++||+++++ ++++++++.||+|+.++. ++++++++.+|+++
T Consensus 310 -~v~~~dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~------------------- 364 (522)
T TIGR02345 310 -RVSDEDLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA------------------- 364 (522)
T ss_pred -cCCHHHHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-------------------
Confidence 56688999999999999998 688899999999999974 46789999887543
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhh
Q 007488 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDE 498 (601)
Q Consensus 420 ~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~e 498 (601)
.+|||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++++.+|++++++..+.+
T Consensus 365 ----------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~ 428 (522)
T TIGR02345 365 ----------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQ 428 (522)
T ss_pred ----------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHH
Confidence 489999999999999999999999999999999985 999999999999999999887777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHH
Q 007488 499 EKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVA 575 (601)
Q Consensus 499 q~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a 575 (601)
| +++++|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 429 ~-~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a 507 (522)
T TIGR02345 429 Q-LIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAA 507 (522)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHH
Confidence 6 89999999999999999999999999999999864 3457999999999999999999999999999999999999
Q ss_pred HHHHchhHHHhCC
Q 007488 576 KTFLMSDCVVVEI 588 (601)
Q Consensus 576 ~~lL~iD~iI~~~ 588 (601)
++||++|++|+.+
T Consensus 508 ~~iL~id~ii~~~ 520 (522)
T TIGR02345 508 CTILSIDETIMNP 520 (522)
T ss_pred HHHHhHHHHHhCC
Confidence 9999999999773
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3e-88 Score=755.26 Aligned_cols=455 Identities=21% Similarity=0.339 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC-----CCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK-----YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDL 146 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~-----~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~ 146 (601)
++++..++.||..|+++|+|||||+||+|||+++ +|+++|||||+||||+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 69999999999999999999997 99999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCc-----H-HHHHHHHhhcCC-----
Q 007488 147 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN----- 215 (601)
Q Consensus 147 ~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~L~~va~ts~~~----- 215 (601)
+||||||+|||+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++ . +|.++|+|+++.
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999999864 3 799999976543
Q ss_pred -hhHHHHHHHHHHHhhccC---Cc--eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC-
Q 007488 216 -NYEVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI- 288 (601)
Q Consensus 216 -~~~ls~li~eAi~~vg~~---g~--I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i- 288 (601)
.+.|++++++|+..+.+. .. +...+|++++|+ ++++|+++++++.+ .|+++++||+|+++|+++
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 578999999999988542 12 344699999999 89999999998654 256789999999999986
Q ss_pred -------------CCHHHHH-----------HHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCC
Q 007488 289 -------------TNARDLI-----------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGE 344 (601)
Q Consensus 289 -------------~~~~~l~-----------~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~ 344 (601)
++++++. +.++.+.+.|++++++++.|++.++++|..+ +|++|+ +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----c
Confidence 5665542 2477888999999999999999999999876 568888 3
Q ss_pred cchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 007488 345 RKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (601)
Q Consensus 345 ~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~ 421 (601)
+++.+++|||++|||++++ ++++++++.||+|++|+ ++++++++|.+|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 4578999999999999998 68889999999999998 67889999988753
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHH
Q 007488 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (601)
Q Consensus 422 ~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~ 500 (601)
+++|||+|||+|+.+++|.||+++||++++++++++| +||||||+|++|+.+|++++++..+.+|
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 3689999999999999999999999999999999998 9999999999999999999887777776
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHH
Q 007488 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKT 577 (601)
Q Consensus 501 ~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~ 577 (601)
+++++|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~ 515 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEM 515 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999853 356799999999999999999999999999999999999999
Q ss_pred HHchhHHHhCCCCC
Q 007488 578 FLMSDCVVVEIKEP 591 (601)
Q Consensus 578 lL~iD~iI~~~~~~ 591 (601)
||++|++|...|++
T Consensus 516 iL~id~ii~~~~~~ 529 (533)
T PTZ00212 516 ILRVDDIIRCAPRQ 529 (533)
T ss_pred HHhhhHhhhcCCcc
Confidence 99999999987644
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.1e-88 Score=743.09 Aligned_cols=434 Identities=22% Similarity=0.326 Sum_probs=399.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
++++..|+.+|..|++++++||||+||+|||+++.|+++|||||+|||++|+++||. |+||+++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 679999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC--cH-HHHHHHHhhcC------ChhHHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~ls~l 222 (601)
||++||+++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +. .|.++++++++ +.+.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 89999999887 56899999
Q ss_pred HHHHHHhhccC--C---------ceEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCC
Q 007488 223 IAEAMSKVGRK--G---------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (601)
Q Consensus 223 i~eAi~~vg~~--g---------~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~ 289 (601)
+++|+..++++ + .|++ .+|++++|+ ++++|++|++++.+| +|+++++||+|++++++++
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999864 2 1333 579999998 999999999998885 4778899999999999976
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCcc
Q 007488 290 NARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLA 369 (601)
Q Consensus 290 ~~~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~ 369 (601)
. |||++++|+++++++|..| +|++|+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 5 9999999999999999887 668888 46689999999999999998 5
Q ss_pred ccCCCCCCceee-eEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccC
Q 007488 370 LDKVGKEVLGNA-SKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQ 445 (601)
Q Consensus 370 l~~~~~~~lG~~-~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~ 445 (601)
+++++++.||+| +.++. ++++++++++|+++ +.+||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 888889999995 44442 46788999888653 5899999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCC
Q 007488 446 TETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524 (601)
Q Consensus 446 t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d 524 (601)
|+.+++|.||+++||+++++++++++ +|||||++||+|+++|++++++.++.+| +++++|++||+.||++||+|||+|
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999999887777777 799999999999999999999999
Q ss_pred hHHHHHHHHhcC----CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHh
Q 007488 525 GSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV 586 (601)
Q Consensus 525 ~~~vi~kL~~~~----~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 586 (601)
+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++||++|++|.
T Consensus 414 ~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 414 VIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 999999998743 45799999999999999999999999999999999999999999999874
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-86 Score=739.50 Aligned_cols=454 Identities=24% Similarity=0.357 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCC--CCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKY--GAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~--g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GD 149 (601)
++++..+++|+..|+++|+|||||+||+|||+++. |+++|||||+|||++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 67999999999999999999999999999999985 9999999999999999999997 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCc-----H-HHHHHHHhhcCC------hh
Q 007488 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN------NY 217 (601)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~L~~va~ts~~~------~~ 217 (601)
||||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++ . +|.++|+|+++. .+
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999853 2 799999988653 47
Q ss_pred HHHHHHHHHHHhhccC---CceEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCC--
Q 007488 218 EVGNMIAEAMSKVGRK---GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN-- 290 (601)
Q Consensus 218 ~ls~li~eAi~~vg~~---g~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~-- 290 (601)
.|++++++|+..+... ..|.+ .+|++++|+ ++++|+++++.+.+ .+++.++||+|+++|++++.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 8999999999998432 23444 489999999 89999999998643 24668999999999987643
Q ss_pred ------------HHHH-----------HHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcch
Q 007488 291 ------------ARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (601)
Q Consensus 291 ------------~~~l-----------~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~ 347 (601)
++++ .++++.+.+.|++++++++.|++.++++|..+ +|++|++|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 3333 23477889999999999999999999988765 679999776 5
Q ss_pred hHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 007488 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (601)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~ 424 (601)
.+|+|||++|||++++ +++++++++||+|++|+. ++++++++.+|.+
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 358 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL------------------------- 358 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCC-------------------------
Confidence 6899999999999999 688889999999998873 5678999998764
Q ss_pred HHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHH
Q 007488 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (601)
Q Consensus 425 ~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~ 503 (601)
+++|||+|||+|+.+++|.||+++||+++++++++++ +||||||+|++|+++|++++++..+.+| +++
T Consensus 359 ----------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 359 ----------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred ----------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 3689999999999999999999999999999999996 9999999999999999998877777776 899
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC---CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHc
Q 007488 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLM 580 (601)
Q Consensus 504 ~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~---~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~ 580 (601)
++|++||+.||++||+|||+|+.+++.+|+..| +.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++||+
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 507 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILR 507 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998643 55799999999999999999999999999999999999999999
Q ss_pred hhHHHhCCCC
Q 007488 581 SDCVVVEIKE 590 (601)
Q Consensus 581 iD~iI~~~~~ 590 (601)
+|++|+.+|+
T Consensus 508 id~ii~~~~~ 517 (519)
T TIGR02341 508 VDNIIKAAPR 517 (519)
T ss_pred HHHHHhcCCC
Confidence 9999999884
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-87 Score=734.98 Aligned_cols=437 Identities=22% Similarity=0.306 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
++++..|+++|..|+++|++||||+||+|||++++|+++|||||+|||++|+++||+ ++|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDGT 82 (472)
T cd03341 7 EEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDGT 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 678899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccc-cCc---H-HHHHHHHhhc-----CChhHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VED---S-ELADVAAVSA-----GNNYEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~---~-~L~~va~ts~-----~~~~~ls~ 221 (601)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +++ . .+.+++++++ +++++|++
T Consensus 83 Tt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~ 162 (472)
T cd03341 83 NLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSP 162 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999866 543 2 6778888764 45789999
Q ss_pred HHHHHHHhhccC--Cce-------EEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHH
Q 007488 222 MIAEAMSKVGRK--GVV-------TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR 292 (601)
Q Consensus 222 li~eAi~~vg~~--g~I-------~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~ 292 (601)
|+++|+.+++++ |.+ ...+|++++|| ++++|++|++.+. .++++++||+|++++++++.
T Consensus 163 l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~-- 230 (472)
T cd03341 163 LVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI-- 230 (472)
T ss_pred HHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC--
Confidence 999999999875 432 23589999999 9999999987532 24478999999999999876
Q ss_pred HHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccC
Q 007488 293 DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372 (601)
Q Consensus 293 ~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~ 372 (601)
|+||||++++|+++++++|..+ +|++|++|+ +.+|+|||++|||++++ ++++
T Consensus 231 ------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~-----~~~~ 282 (472)
T cd03341 231 ------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP-----RLGA 282 (472)
T ss_pred ------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec-----cccc
Confidence 8999999999999999987643 789999877 77899999999999998 5788
Q ss_pred CCCCCceeeeEEEEe---cCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhH
Q 007488 373 VGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETE 449 (601)
Q Consensus 373 ~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~ 449 (601)
++++.+|+|++|++. +++++++.++++. ++++||+|||+|+.+
T Consensus 283 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------------------~~~~TI~lrG~t~~~ 328 (472)
T cd03341 283 PTPEEIGYCDSVYVEEIGDTKVVVFRQNKED----------------------------------SKIATIVLRGATQNI 328 (472)
T ss_pred CCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------------------CCeEEEEEECCCHHH
Confidence 888999999999865 4889999887531 368999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHH
Q 007488 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528 (601)
Q Consensus 450 l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~v 528 (601)
++|.||+++||++++++++++| +|||||++|++++.+|++++++..+.++ +++++|++||+.||++|++|||+|+.++
T Consensus 329 l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~d~~~~ 407 (472)
T cd03341 329 LDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGLDATEV 407 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999 9999999999999999999877767665 8999999999999999999999999999
Q ss_pred HHHHHhc---CCCeeeEecCCC--cccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhC
Q 007488 529 SEKVLSS---DNHKYGYNAATG--NYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 587 (601)
Q Consensus 529 i~kL~~~---~~~~~Gid~~~g--~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~ 587 (601)
+.+|+.. ++.++|||+.+| ++.||++.|||||+.||+++|++|+|+|++||+||++|..
T Consensus 408 ~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 408 LSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999763 356899999999 9999999999999999999999999999999999999864
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.5e-86 Score=729.16 Aligned_cols=439 Identities=38% Similarity=0.545 Sum_probs=405.3
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcc
Q 007488 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (601)
Q Consensus 65 ~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd 144 (601)
+..++ ++++..+++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||. ++|+++++++||
T Consensus 2 ~~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~ 75 (464)
T cd00309 2 EREFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQD 75 (464)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHH
Confidence 45677 899999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccc--cCcH-HHHHHHHhhcC------C
Q 007488 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE--VEDS-ELADVAAVSAG------N 215 (601)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~--v~~~-~L~~va~ts~~------~ 215 (601)
+++||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|+++++| +.+. +|.++|+|+++ +
T Consensus 76 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~ 155 (464)
T cd00309 76 DEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGG 155 (464)
T ss_pred hHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999998 4455 89999999988 7
Q ss_pred hhHHHHHHHHHHHhhcc------CCceEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeeccc
Q 007488 216 NYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK 287 (601)
Q Consensus 216 ~~~ls~li~eAi~~vg~------~g~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~ 287 (601)
+++|++++++|+.++++ .+.|++ .+|++++|| ++++|++|+++|.+|+| +++++||+|++++++
T Consensus 156 ~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~ 227 (464)
T cd00309 156 DDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCK 227 (464)
T ss_pred hHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecC
Confidence 89999999999999988 466655 589999999 89999999999999875 568999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCC
Q 007488 288 ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367 (601)
Q Consensus 288 i~~~~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~ 367 (601)
++. |||++++|+++++++|..+ +|++|++ +++++|+|||++||+++++
T Consensus 228 Le~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~---- 275 (464)
T cd00309 228 LEY-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS---- 275 (464)
T ss_pred cce-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEec----
Confidence 876 7788888999999999875 6788885 5689999999999999998
Q ss_pred ccccCCCCCCceeeeEEEEe---cCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEcc
Q 007488 368 LALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA 444 (601)
Q Consensus 368 ~~l~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG 444 (601)
++++++++.+|+|++|++. ++++++|.++.. +.+|||+|||
T Consensus 276 -~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG 319 (464)
T cd00309 276 -RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRG 319 (464)
T ss_pred -ccccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeC
Confidence 5788889999999999864 567888887653 3589999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCC
Q 007488 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV 523 (601)
Q Consensus 445 ~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~ 523 (601)
+|+.+++|+||+++||+++++++++++ +|||||++|++++++|++++.+.++.+| +++++|++||+.||++|++|||+
T Consensus 320 ~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~ 398 (464)
T cd00309 320 ATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGL 398 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999995 9999999999999999999877766665 89999999999999999999999
Q ss_pred ChHHHHHHHHhcC---CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHh
Q 007488 524 NGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV 586 (601)
Q Consensus 524 d~~~vi~kL~~~~---~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 586 (601)
|+.+++.+|+..| ..++|+|..+|++.||++.|||||+.||+++|+.|+|+|++||+||++|+
T Consensus 399 d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 399 DPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred CHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999998754 34789999999999999999999999999999999999999999999984
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-85 Score=663.04 Aligned_cols=459 Identities=20% Similarity=0.314 Sum_probs=419.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCccc
Q 007488 73 YAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 152 (601)
Q Consensus 73 ~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTT 152 (601)
-..-+|+++|..+++.+++||||+||||+|++..|+++|+|||+||+|-|++-||+ |++|+++|++||.++|||||
T Consensus 20 ~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQDaEVGDGTT 95 (543)
T KOG0361|consen 20 GQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQDAEVGDGTT 95 (543)
T ss_pred hhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhccccccCCce
Confidence 34557899999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-------HHHHHHHhhcC------ChhHH
Q 007488 153 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-------ELADVAAVSAG------NNYEV 219 (601)
Q Consensus 153 t~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-------~L~~va~ts~~------~~~~l 219 (601)
|||+|++|+|+++..+++.|+||..|+++|++|...+++.|+++++.++.. .|++.|.|+++ +.++|
T Consensus 96 SVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF 175 (543)
T KOG0361|consen 96 SVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFF 175 (543)
T ss_pred eEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999888721 57788888753 47999
Q ss_pred HHHHHHHHHhhccCC---c--eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeeccc-------
Q 007488 220 GNMIAEAMSKVGRKG---V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK------- 287 (601)
Q Consensus 220 s~li~eAi~~vg~~g---~--I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~------- 287 (601)
++|++||+..+..+. . |++++|++++|| .+++|+.|++.|....| +.+|+.|.||||+++|.+
T Consensus 176 ~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEk 250 (543)
T KOG0361|consen 176 AKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAEK 250 (543)
T ss_pred HHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeecccc
Confidence 999999999987431 2 566899999999 69999999999998887 667889999999999854
Q ss_pred ------CCCHHHHH-----------HHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHH
Q 007488 288 ------ITNARDLI-----------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350 (601)
Q Consensus 288 ------i~~~~~l~-----------~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L 350 (601)
+.++++++ +.|+++..+|.++|++.-.|.|.|-++|....+ .+.|+++.++|
T Consensus 251 dNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----------FCAGRV~~eDl 319 (543)
T KOG0361|consen 251 DNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----------FCAGRVPEEDL 319 (543)
T ss_pred cCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----------eecCcCCHHHH
Confidence 45666654 357888899999999999999999999987643 35689999999
Q ss_pred HHHHHHhCCeEeeccCCccccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007488 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427 (601)
Q Consensus 351 ~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~ 427 (601)
.|...+|||++.+ +..++.++.||.|..++ ++.++|.+|+||+..
T Consensus 320 ~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a--------------------------- 367 (543)
T KOG0361|consen 320 NRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA--------------------------- 367 (543)
T ss_pred HHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc---------------------------
Confidence 9999999999998 67889999999999996 678999999999863
Q ss_pred HHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 007488 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIV 506 (601)
Q Consensus 428 er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~ 506 (601)
..||+++||+.++.++|.+|++|||++++|.|+++. ||+|||++||++|++|++++.++.+++| +.+.+|
T Consensus 368 --------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q-~~i~A~ 438 (543)
T KOG0361|consen 368 --------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINAY 438 (543)
T ss_pred --------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHH-HHHHHH
Confidence 589999999999999999999999999999999998 9999999999999999999999999887 678999
Q ss_pred HHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhH
Q 007488 507 KRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDC 583 (601)
Q Consensus 507 a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~ 583 (601)
++|||.||++||+|||+|...++.||+.. ++.|+|+|.+++.+.|+++.+||||..||++++..|+|.|+++|.+|+
T Consensus 439 akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDe 518 (543)
T KOG0361|consen 439 AKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDE 518 (543)
T ss_pred HHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhh
Confidence 99999999999999999999999999865 468999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCC
Q 007488 584 VVVEIKEPE 592 (601)
Q Consensus 584 iI~~~~~~~ 592 (601)
.|+.++.+.
T Consensus 519 Tikn~~S~~ 527 (543)
T KOG0361|consen 519 TIKNPKSQS 527 (543)
T ss_pred hhcCCcccC
Confidence 999877553
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=3.5e-80 Score=684.50 Aligned_cols=440 Identities=30% Similarity=0.479 Sum_probs=399.8
Q ss_pred HHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcccHHHHHHHHHHHH
Q 007488 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAE 164 (601)
Q Consensus 85 la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTTt~vvLa~~Ll~~ 164 (601)
|+++|++||||+||+|||++..|+++|||||+||+++|+++||+ ++||++++++|++++||||||+|+|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH--HHHHHHHhhcCCh------hHHHHHHHHHHHhhc-----
Q 007488 165 GVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAVSAGNN------YEVGNMIAEAMSKVG----- 231 (601)
Q Consensus 165 ~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~L~~va~ts~~~~------~~ls~li~eAi~~vg----- 231 (601)
+.+++++|+||..|++||+.+.+.+++.|++++++++.. .|+++|+++++++ +.|++++++|+..+.
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988764 8999999998876 899999999994332
Q ss_pred -cCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHH-----------------
Q 007488 232 -RKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD----------------- 293 (601)
Q Consensus 232 -~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~----------------- 293 (601)
..++++ ..|++++|| ++++|++|+++|.++ +|++.+++|+|++++++++..+.
T Consensus 157 ~~i~i~~-i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~ 227 (485)
T PF00118_consen 157 DNIKIIK-IPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELS 227 (485)
T ss_dssp GGEEEEE-EESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHH
T ss_pred cchhhhh-hcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHH
Confidence 222233 588889999 899999999999886 36667899999999998876665
Q ss_pred ------HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCC
Q 007488 294 ------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367 (601)
Q Consensus 294 ------l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~ 367 (601)
+.++++++.+.|+++||++++|++.++++|..|++ .+++ ++++++|++|+++||+++++
T Consensus 228 ~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i~-----~v~~~~l~~i~~~tg~~ii~---- 292 (485)
T PF00118_consen 228 KQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVIR-----RVSKEDLERIARATGASIIS---- 292 (485)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEES-----SEHHHHHHHHHHHHTSBEBS----
T ss_pred hhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hccc-----cchHHHHHhhhcccCCcEec----
Confidence 78899999999999999999999999999988854 4444 66799999999999999998
Q ss_pred ccccCCCCCCceeeeEE---EEecCeEEEEcC--CCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEE
Q 007488 368 LALDKVGKEVLGNASKV---VLTKDTTTIVGD--GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQV 442 (601)
Q Consensus 368 ~~l~~~~~~~lG~~~~v---~i~~~~~~~i~~--~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~v 442 (601)
++++++++.+|+|+.+ ++++++++++++ +. .+..+||+|
T Consensus 293 -~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till 336 (485)
T PF00118_consen 293 -SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILL 336 (485)
T ss_dssp -SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEE
T ss_pred -ccccccchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEe
Confidence 5788888889999999 567889999983 32 357899999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHc
Q 007488 443 GAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNA 521 (601)
Q Consensus 443 rG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~Na 521 (601)
||+|+.+++|+|++++||+++++++++++ +|||||++|++|+++|++++.+.++.++ +++++|++||+.||++|++||
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~Na 415 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNA 415 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999987 9999999999999999999887766655 899999999999999999999
Q ss_pred CCChHHHHHHHHh--cCCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCC
Q 007488 522 GVNGSVVSEKVLS--SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 589 (601)
Q Consensus 522 G~d~~~vi~kL~~--~~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~ 589 (601)
|+|+.+++++|+. +.++++|||+.+|++.||.+.|||||+.+|+++|+.|+|+|++||++|++|..+|
T Consensus 416 G~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 416 GLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp TSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred CCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999987 3456999999999999999999999999999999999999999999999998876
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-78 Score=610.15 Aligned_cols=458 Identities=22% Similarity=0.334 Sum_probs=408.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
++.|.+++++.+.++|+++|||||+||||||....|+++|||||+||||.|++-||+ |+||++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 778999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccC--cH-HHHHHHHhhcC------ChhHHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~ls~l 222 (601)
||+|+|+++||+.+.+|+.+|+||+.|...|+.|.+..+++|++|+.|++ +. .|.+-|+||+| +...+++|
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999999876 44 68888999875 45789999
Q ss_pred HHHHHHhhccCC--------ceEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccC----
Q 007488 223 IAEAMSKVGRKG--------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (601)
Q Consensus 223 i~eAi~~vg~~g--------~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i---- 288 (601)
.++|+.++-... .|++ +.|++++|+ ++++|++|++.-... ..|..+++++|-++.+.|
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 999999985421 2333 699999999 999999999875432 145568889988887653
Q ss_pred ---------CCHHH-----------HHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchh
Q 007488 289 ---------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (601)
Q Consensus 289 ---------~~~~~-----------l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~ 348 (601)
++..+ ++++++++++.|+|++++|++|=.++++-|..+.+. .++|++|| |+.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----cccHh
Confidence 33322 467889999999999999999877776666655552 35899999 77899
Q ss_pred HHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEE----ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 007488 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (601)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i----~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~ 424 (601)
+++.+|+.+|++++. +++.++++.||+++-++. ++.+++-+.|..+.
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 699999999999998874 34577878776442
Q ss_pred HHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHH
Q 007488 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (601)
Q Consensus 425 ~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~ 503 (601)
|..++|++||++...++|.+|++|||||++|+.++.. ++||||+.|++++..|.+++.+..+.+. ++.
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~-yc~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEA-YCW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchh-HHH
Confidence 5689999999999999999999999999999999997 9999999999999999999999999887 689
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHc
Q 007488 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLM 580 (601)
Q Consensus 504 ~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~ 580 (601)
+.|++|||.||.+||+|||++|..++.+|+.. ++.++|+|.+.|.+.||++..|+.|+.|-..+++.|+|++.+||+
T Consensus 447 rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILK 526 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILK 526 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999875 468999999999999999999999999999999999999999999
Q ss_pred hhHHHhC
Q 007488 581 SDCVVVE 587 (601)
Q Consensus 581 iD~iI~~ 587 (601)
||+|+..
T Consensus 527 IDDIv~a 533 (534)
T KOG0358|consen 527 IDDIVNA 533 (534)
T ss_pred hhhhccc
Confidence 9999864
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-75 Score=589.38 Aligned_cols=457 Identities=23% Similarity=0.358 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC--CCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~--~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GD 149 (601)
+.+|...+.|...+.|+|+|||||+||+||+... .|.+.+||||+||||+|.+.+|. ||+|++.++-||+++||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 7799999999999999999999999999999853 56799999999999999999999 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH------HHHHHHHhhcC------Chh
Q 007488 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS------ELADVAAVSAG------NNY 217 (601)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~------~L~~va~ts~~------~~~ 217 (601)
|||||+||+.+||+|+.+++.+.+||+.|+.||+.|...+.+.|.+.+++..++ +|.++|+|.+. ..+
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999888765421 89999998653 478
Q ss_pred HHHHHHHHHHHhhccCCc-----eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeeccc-----
Q 007488 218 EVGNMIAEAMSKVGRKGV-----VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK----- 287 (601)
Q Consensus 218 ~ls~li~eAi~~vg~~g~-----I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~----- 287 (601)
+|++|.++|+.++.-.+. |.+..|++++|| .+-+|+.+++.+-. ..|+.++||+||+-+.+
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 999999999999854432 444799999999 69999999987543 25668999999997754
Q ss_pred ---------CCCH-----------HHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcch
Q 007488 288 ---------ITNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (601)
Q Consensus 288 ---------i~~~-----------~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~ 347 (601)
+.+. +.+...++++.+.|+|+.|-..-|.++-.++|... .|++|.-..|
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADF----- 312 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADF----- 312 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccc-----
Confidence 2222 13566789999999999998888888888877664 5577764443
Q ss_pred hHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 007488 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (601)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~ 424 (601)
+-++||+.+|||.+.+ ++++++...||+|+.++ +++++++.|+|+.-
T Consensus 313 dGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------------- 362 (527)
T KOG0363|consen 313 DGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------------- 362 (527)
T ss_pred hhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc-------------------------
Confidence 4589999999999999 79999999999999886 68999999999753
Q ss_pred HHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHH
Q 007488 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (601)
Q Consensus 425 ~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~ 503 (601)
|-.|||++||+|++.+||.+|++|||||++...+++. ++.||||.||..+..+.+++...++++. +++
T Consensus 363 ----------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea-~Ai 431 (527)
T KOG0363|consen 363 ----------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA-LAI 431 (527)
T ss_pred ----------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh-HHH
Confidence 4479999999999999999999999999999999998 9999999999999999999998888886 799
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC---CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHc
Q 007488 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLM 580 (601)
Q Consensus 504 ~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~---~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~ 580 (601)
++|++||..+|.+||.|+|+|+.+++++|++.| ...+|+|+.+|++.||.+.||+|.+.+|++.+..|.|.|.+|||
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilr 511 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILR 511 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHh
Confidence 999999999999999999999999999999764 57899999999999999999999999999999999999999999
Q ss_pred hhHHHhCCCCCCC
Q 007488 581 SDCVVVEIKEPEP 593 (601)
Q Consensus 581 iD~iI~~~~~~~~ 593 (601)
+|.||.+.|.+..
T Consensus 512 vD~Iik~aPR~r~ 524 (527)
T KOG0363|consen 512 VDNIIKAAPRERE 524 (527)
T ss_pred hhhhhhcCCcccc
Confidence 9999999998643
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-71 Score=577.61 Aligned_cols=460 Identities=24% Similarity=0.319 Sum_probs=404.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 007488 70 KDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (601)
Q Consensus 70 ~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GD 149 (601)
..+++...++++|++|+++++|+|||.|||||++|..|++.+|||.+||+++++++||+ |+||+++++.|+++.||
T Consensus 23 ~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGD 98 (537)
T KOG0362|consen 23 GEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGD 98 (537)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCC
Confidence 45788889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccc-cCcH-HHHHHHHhh-----cCChhHHHHH
Q 007488 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VEDS-ELADVAAVS-----AGNNYEVGNM 222 (601)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~~-~L~~va~ts-----~~~~~~ls~l 222 (601)
||+++|+|+++||+++.++|..|++|.+|+.||++|.+++++.|+++... +.+. +...+++++ ..++++++++
T Consensus 99 gtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~l 178 (537)
T KOG0362|consen 99 GTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKL 178 (537)
T ss_pred CceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999987532 2221 222444443 4568999999
Q ss_pred HHHHHHhhccCCc-----e--EEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeeccc--------
Q 007488 223 IAEAMSKVGRKGV-----V--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------- 287 (601)
Q Consensus 223 i~eAi~~vg~~g~-----I--~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~-------- 287 (601)
+++|+..+.+.+. | .+..|++++|| .++.||+|.+.. ++...+-+.+||.++.|+
T Consensus 179 Va~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~---------eG~v~~ak~arvAvf~cP~d~~~TEt 248 (537)
T KOG0362|consen 179 VAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDP---------EGEVKSAKDARVAVFACPFDIAQTET 248 (537)
T ss_pred HHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEecccc---------CCcccccccceeEEEecCCCcccccC
Confidence 9999999988732 2 23699999999 899999999873 344456678899999887
Q ss_pred -----CCCHHHHHH-----------HHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHH
Q 007488 288 -----ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (601)
Q Consensus 288 -----i~~~~~l~~-----------~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~ 351 (601)
|++++++.+ .++.+...|+++|++...+++.+|+++ |++ +|+++++++ +.+|.
T Consensus 249 kgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLr 317 (537)
T KOG0362|consen 249 KGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLR 317 (537)
T ss_pred cceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHH
Confidence 677776654 467788899999999999999998865 665 899999988 78899
Q ss_pred HHHHHhCCeEeeccCCccccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007488 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (601)
Q Consensus 352 ~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~e 428 (601)
+||+..||++++ .+.++.+..+|+|++|. ++++.++.|.....
T Consensus 318 rlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~----------------------------- 363 (537)
T KOG0362|consen 318 RLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST----------------------------- 363 (537)
T ss_pred HHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC-----------------------------
Confidence 999999999998 68899999999999996 46666666654221
Q ss_pred HHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 007488 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (601)
Q Consensus 429 r~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a 507 (601)
.+.++|++|||+|+..+|+.||.+.|++++.+...+++ ++||+|++|++|+..|.++.+.+++.+| ++++.|+
T Consensus 364 -----~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q-~Aik~fa 437 (537)
T KOG0362|consen 364 -----GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQ-LAIKKFA 437 (537)
T ss_pred -----CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcch-hHHHHHH
Confidence 13589999999999999999999999999999999998 9999999999999999999999999998 6999999
Q ss_pred HHHhHHHHHHHHHcCCChHHHHHHHHhcCC--CeeeEecCCC-cccchhhcccccchHHHHHHHHHHHHHHHHHHchhHH
Q 007488 508 RALCYPLKLIAKNAGVNGSVVSEKVLSSDN--HKYGYNAATG-NYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCV 584 (601)
Q Consensus 508 ~AL~~ip~~La~NaG~d~~~vi~kL~~~~~--~~~Gid~~~g-~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~i 584 (601)
+||+.+|++|++|||++..+++++|...|. .+.|+|+... ...|+.++||||-+.+|.++++.|+++|.++|++|+|
T Consensus 438 ~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqi 517 (537)
T KOG0362|consen 438 EALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQI 517 (537)
T ss_pred HHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhhe
Confidence 999999999999999999999999987653 4678888766 5899999999999999999999999999999999999
Q ss_pred HhCCCCCCCC
Q 007488 585 VVEIKEPEPA 594 (601)
Q Consensus 585 I~~~~~~~~~ 594 (601)
|+.+|..-|.
T Consensus 518 imak~aggp~ 527 (537)
T KOG0362|consen 518 IMAKKAGGPK 527 (537)
T ss_pred eEecccCCCC
Confidence 9999885443
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-70 Score=567.48 Aligned_cols=465 Identities=23% Similarity=0.311 Sum_probs=411.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 007488 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (601)
Q Consensus 72 ~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGT 151 (601)
+.+|..+..++..++++|+++|||-|+|||+++..|++.+||||+|||+.+.++||+ +|+|++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 668888899999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHh-cccccCcH---HHHHHHHhhcC------ChhHHHH
Q 007488 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVEDS---ELADVAAVSAG------NNYEVGN 221 (601)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~---~L~~va~ts~~------~~~~ls~ 221 (601)
|++++++++||+++.+|+..++||+.|+.||+.|+..+++++.+ +++|++.. -|.++++++++ ..++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999975 67888754 79999999864 3589999
Q ss_pred HHHHHHHhhcc---CC---------ceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeeccc--
Q 007488 222 MIAEAMSKVGR---KG---------VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-- 287 (601)
Q Consensus 222 li~eAi~~vg~---~g---------~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~-- 287 (601)
++++|+..+.- +| .|-+-+|.+..|| .++.|+.+.....+. .|+..+.|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999988732 22 1333699999999 799999999876653 37778889999999975
Q ss_pred -----------CCCHHHHH-----------HHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 288 -----------ITNARDLI-----------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 288 -----------i~~~~~l~-----------~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
|.+++++. +-++++...|.|+|+++++|||.++.+|+.. .++||+ +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~vea------gamAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhhH-----HH
Confidence 45665432 3467889999999999999999999999987 346665 67
Q ss_pred chhHHHHHHHHhCCeEeeccCCccc-cCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 007488 346 KSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (601)
Q Consensus 346 ~~~~L~~ia~~tG~~ii~~~~~~~l-~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~ 421 (601)
++++|++|+++||++++++..+++- +.+.+..+|+|++|. ++++.++++.+...
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 7999999999999999996443322 356788999999995 67888998887432
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHH
Q 007488 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (601)
Q Consensus 422 ~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~ 500 (601)
..|+|++||+++..+||++|++|||+|+++..++++ +||||||+|.+|+.+|+.|+.+..+.||
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~- 437 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQ- 437 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHH-
Confidence 368999999999999999999999999999999999 9999999999999999999998888887
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC-----------CCeeeEecCCCcccchhhcccccchHHHHHHHH
Q 007488 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-----------NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLE 569 (601)
Q Consensus 501 ~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~-----------~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~ 569 (601)
+++.-|+.||..+|++|+-|++.|+.+.+++++..| -.|+|.|+.+|++.|.++.|+++|..+|..+|+
T Consensus 438 laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk 517 (545)
T KOG0360|consen 438 LAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLK 517 (545)
T ss_pred HHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhH
Confidence 577788889999999999999999999999998643 158999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhHHHhCCCCCCCCCC
Q 007488 570 HASSVAKTFLMSDCVVVEIKEPEPAMP 596 (601)
Q Consensus 570 ~A~e~a~~lL~iD~iI~~~~~~~~~~~ 596 (601)
.|+|.+..+||+|++|.-.|+.+...|
T Consensus 518 ~ateaaitiLriD~li~l~~~~~~~~~ 544 (545)
T KOG0360|consen 518 FATEAAITILRIDDLIKLLPELQVAVE 544 (545)
T ss_pred HHHHhhhhhcchhhhhhcCccccccCC
Confidence 999999999999999988888766544
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-66 Score=530.58 Aligned_cols=451 Identities=20% Similarity=0.274 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcccHHHH
Q 007488 77 KLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVV 156 (601)
Q Consensus 77 ~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTTt~vv 156 (601)
.++++.+.++|.++++|||+.|.||+.++.|.+..||||..|+++|++.||. |+-+.+++.+||+++|||||||++
T Consensus 23 ~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi~ 98 (527)
T KOG0364|consen 23 GNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVII 98 (527)
T ss_pred cchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeeee
Confidence 3578999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH---HHHHHHHhhc------CChhHHHHHHHHHH
Q 007488 157 LAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAVSA------GNNYEVGNMIAEAM 227 (601)
Q Consensus 157 La~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~---~L~~va~ts~------~~~~~ls~li~eAi 227 (601)
|++|+|.++..++.+|+||+.|++.|.+|++.+++.+++.+.|++.+ .++.+...+. .+.+.++++..+|+
T Consensus 99 lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~av 178 (527)
T KOG0364|consen 99 LAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAV 178 (527)
T ss_pred ehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999999988887644 6777777653 35678999999999
Q ss_pred HhhccC-Cc---------eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCH------
Q 007488 228 SKVGRK-GV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA------ 291 (601)
Q Consensus 228 ~~vg~~-g~---------I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~------ 291 (601)
.+++.+ |. +.+++|+.++|| ++++|+.+.+...||. |...++||+|+++|+++..-
T Consensus 179 k~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqt 250 (527)
T KOG0364|consen 179 KTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQT 250 (527)
T ss_pred HHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCcccc
Confidence 999875 32 223699999999 8999999999999984 55578999999999974211
Q ss_pred ------------------HHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHH
Q 007488 292 ------------------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDI 353 (601)
Q Consensus 292 ------------------~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~i 353 (601)
+++..+++.+....++|||+.+++++.+.++|.++++ .+++++++.+-.+|
T Consensus 251 nve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i-----------T~~rr~rKtDn~ri 319 (527)
T KOG0364|consen 251 NVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI-----------TAIRRLRKTDNNRI 319 (527)
T ss_pred ceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc-----------hhhhhhhccccchh
Confidence 2345567788888999999999999999999998754 35568899999999
Q ss_pred HHHhCCeEeeccCCccccCCCCCCcee-eeEEEE---ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007488 354 AILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNER 429 (601)
Q Consensus 354 a~~tG~~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er 429 (601)
+.+||++++. ..+++.+.+.|+ |+-+++ ++++|.||.+|.+|+
T Consensus 320 a~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk---------------------------- 366 (527)
T KOG0364|consen 320 ARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK---------------------------- 366 (527)
T ss_pred hhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCCc----------------------------
Confidence 9999999998 689999999996 667764 678999999998874
Q ss_pred HHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007488 430 IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKR 508 (601)
Q Consensus 430 ~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~ 508 (601)
.|||++||+|..+++|.+|.+.||+.+.|+.+-++ ++||||++||.+|+.|.+.+...++-++ +-+.+++.
T Consensus 367 -------aCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVek-wPY~Ava~ 438 (527)
T KOG0364|consen 367 -------ACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEK-WPYGAVAG 438 (527)
T ss_pred -------ceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhc-cchhhhhc
Confidence 79999999999999999999999999999999998 9999999999999999998777777776 68999999
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHhcC---CCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHH
Q 007488 509 ALCYPLKLIAKNAGVNGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVV 585 (601)
Q Consensus 509 AL~~ip~~La~NaG~d~~~vi~kL~~~~---~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI 585 (601)
||+.+|++|++|+|.++...+..++..| ...+|+|..+|.++||.+.++|+|..+|.+..++|.+.+++|||+|+++
T Consensus 439 AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIv 518 (527)
T KOG0364|consen 439 ALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIV 518 (527)
T ss_pred CceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhcee
Confidence 9999999999999999999999998653 4678999999999999999999999999999999999999999999999
Q ss_pred hCCCCC
Q 007488 586 VEIKEP 591 (601)
Q Consensus 586 ~~~~~~ 591 (601)
...++.
T Consensus 519 sg~kk~ 524 (527)
T KOG0364|consen 519 SGKKKR 524 (527)
T ss_pred eeeeec
Confidence 887654
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-61 Score=496.74 Aligned_cols=451 Identities=23% Similarity=0.355 Sum_probs=394.3
Q ss_pred HHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcccH
Q 007488 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTT 153 (601)
Q Consensus 74 ~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTTt 153 (601)
+...++.+...+.+.+++.+||+|..||++++.|++++|+||.+.+++|++.||. +-++..++..||+..||||||
T Consensus 18 al~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGttS 93 (520)
T KOG0359|consen 18 ALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGTTS 93 (520)
T ss_pred ceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCcce
Confidence 4445566778888999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHhhcCC------hhHHHHHHHHHH
Q 007488 154 SVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGN------NYEVGNMIAEAM 227 (601)
Q Consensus 154 ~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~------~~~ls~li~eAi 227 (601)
+|+|+++|++++..++..|+||..|..||+.|.+.++++|+..+++++...|..|++++++. -+.+++++++|+
T Consensus 94 ~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aV 173 (520)
T KOG0359|consen 94 VVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDSV 173 (520)
T ss_pred EEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999888888776899999999865 377889999999
Q ss_pred Hhhcc-CCce-----EE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCC----------
Q 007488 228 SKVGR-KGVV-----TL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT---------- 289 (601)
Q Consensus 228 ~~vg~-~g~I-----~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~---------- 289 (601)
..+.+ ++.| .+ -+-.+..|+ .+++|.++|+|-+||. |+..++|+.||+++..++
T Consensus 174 l~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Einsgf 245 (520)
T KOG0359|consen 174 LCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSGF 245 (520)
T ss_pred eeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccch
Confidence 98873 2221 11 244566777 7999999999999985 677899999999986532
Q ss_pred ---CHHH----------H-HHHHHHHHhcC---CCE-EEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHH
Q 007488 290 ---NARD----------L-INVLEDAIRGA---YPI-LIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (601)
Q Consensus 290 ---~~~~----------l-~~~le~~~~~~---~~l-vI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~ 351 (601)
+.+| + .+-+.+++..+ +.+ ||.+++||+..|+.|..+ +|+|++ +-++..||
T Consensus 246 fYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLR-----RAKRRNmE 314 (520)
T KOG0359|consen 246 FYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALR-----RAKRRNME 314 (520)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHH-----HHhhhhHH
Confidence 2222 1 11233444333 234 456789999999999876 445554 66788999
Q ss_pred HHHHHhCCeEeeccCCccccCCCCCCceeeeEEE---EecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007488 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (601)
Q Consensus 352 ~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~e 428 (601)
||..+|||..+. ++++++|+.||+|+.|+ +++++|+|+++|.+|
T Consensus 315 RL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p---------------------------- 361 (520)
T KOG0359|consen 315 RLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP---------------------------- 361 (520)
T ss_pred HHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC----------------------------
Confidence 999999999998 79999999999999996 579999999999887
Q ss_pred HHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 007488 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (601)
Q Consensus 429 r~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a 507 (601)
+.|||+++||+++.+.+.|++++|++++++++++++ ++||+|++|+.++.+|+...++.+++.+ +|+++|+
T Consensus 362 -------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~afa 433 (520)
T KOG0359|consen 362 -------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKAFA 433 (520)
T ss_pred -------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHHHH
Confidence 478999999999999999999999999999999998 9999999999999999988888888876 8999999
Q ss_pred HHHhHHHHHHHHHcCCChHHHHHHHHhcCC-CeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHh
Q 007488 508 RALCYPLKLIAKNAGVNGSVVSEKVLSSDN-HKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV 586 (601)
Q Consensus 508 ~AL~~ip~~La~NaG~d~~~vi~kL~~~~~-~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 586 (601)
+||..+|++|++|+|+|..+.+.+|...++ ...|+|+.+|+..|....||||.+.||++.|..++-+|+.||-+|+|+.
T Consensus 434 ~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~r 513 (520)
T KOG0359|consen 434 NALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIR 513 (520)
T ss_pred hhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987643 3469999999999999999999999999999999999999999999996
Q ss_pred CC
Q 007488 587 EI 588 (601)
Q Consensus 587 ~~ 588 (601)
.-
T Consensus 514 AG 515 (520)
T KOG0359|consen 514 AG 515 (520)
T ss_pred cc
Confidence 53
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-60 Score=470.99 Aligned_cols=373 Identities=24% Similarity=0.295 Sum_probs=343.6
Q ss_pred cccccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHH
Q 007488 58 PKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVR 137 (601)
Q Consensus 58 ~~~~~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~ 137 (601)
+|-...|.-.|| -++.+..+-+..++++++++++||+|++|++..+.|++.+|||| .|++ ++|+.
T Consensus 15 LrDQd~~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv 79 (400)
T KOG0357|consen 15 LRDQERKDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIV 79 (400)
T ss_pred eeeccCCchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHH
Confidence 455546778888 88999999999999999999999999999999999999999999 6788 99999
Q ss_pred HHHhhcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHhhcCChh
Q 007488 138 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNY 217 (601)
Q Consensus 138 ~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~~~ 217 (601)
..++.|+.++|||||.+++|++.+++++.+++..|+||..|..||+++.+.+++.|++.+.+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999888765533
Q ss_pred HHHHHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHH
Q 007488 218 EVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINV 297 (601)
Q Consensus 218 ~ls~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~ 297 (601)
+..+
T Consensus 144 ----------------------------------------------------------------------------f~em 147 (400)
T KOG0357|consen 144 ----------------------------------------------------------------------------FEEM 147 (400)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2335
Q ss_pred HHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCC
Q 007488 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEV 377 (601)
Q Consensus 298 le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~ 377 (601)
++++++.|.+|+||+|++||||.++|..|.+ |..+|+.-.++|-||+.|||+++. .+++++++.
T Consensus 148 i~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp-----rF~eL~~~k 211 (400)
T KOG0357|consen 148 IQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP-----RFSELTAEK 211 (400)
T ss_pred HHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec-----cHhhhCHhh
Confidence 7788899999999999999999999999976 556677788999999999999999 799999999
Q ss_pred ceeeeEEEE-----ecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHH
Q 007488 378 LGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (601)
Q Consensus 378 lG~~~~v~i-----~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E 452 (601)
||+|+.|+. ++|+..+++.|++. ..+||.|||.+..+++|
T Consensus 212 LG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nkmii~E 256 (400)
T KOG0357|consen 212 LGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNKMIIEE 256 (400)
T ss_pred ccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcceeHHH
Confidence 999999963 38899999999874 46799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHH
Q 007488 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (601)
Q Consensus 453 ~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~k 531 (601)
.||++|||||++|+.+++. +|+|||++|+.||.++.+.++.+++.|| +++.+|++||++||..||+|+|++|.+.+++
T Consensus 257 akrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eq-ya~rafa~ale~ipmalaensgl~pi~~ls~ 335 (400)
T KOG0357|consen 257 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQ-YAFRAFADALESIPMALAENSGLDPIETLSD 335 (400)
T ss_pred HHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHH-HHHHHHHHHHhhcchhhhhccCCCchhhhhH
Confidence 9999999999999999998 9999999999999999999999999998 5999999999999999999999999999999
Q ss_pred HHhc----CCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCC
Q 007488 532 VLSS----DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 589 (601)
Q Consensus 532 L~~~----~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~ 589 (601)
+++. .++.+|+|+....--||.+.+|+||+.-|++.+..|++++.|+|++|+|+..-.
T Consensus 336 ~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 336 VKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred hHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 9753 578999999988889999999999999999999999999999999999986543
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=4.1e-27 Score=233.10 Aligned_cols=191 Identities=36% Similarity=0.484 Sum_probs=168.0
Q ss_pred HHHHHHHhhcC-----ChhHHHHHHHHHHHhhcc------CCceEE--ecCCcccceeeeeeeeEEeecccCCccccCcc
Q 007488 204 ELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSE 270 (601)
Q Consensus 204 ~L~~va~ts~~-----~~~~ls~li~eAi~~vg~------~g~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~ 270 (601)
.|.++|+++++ +++.+++++++|+..+++ .+.|.+ .+|++++|| ++++|++|+++|.+|+|
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~m----- 76 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPYM----- 76 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCCC-----
Confidence 57899999988 789999999999999987 345544 699999999 89999999999999874
Q ss_pred cCeeEeeceeEeeecccCCCHHHHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHH
Q 007488 271 KMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350 (601)
Q Consensus 271 ~~~~~~~~~kIll~d~~i~~~~~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L 350 (601)
+.+++||+|++++++++. +|+++++|+++++++|..+ +|++|++ +++.+|
T Consensus 77 --~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~l 126 (209)
T cd03333 77 --PKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKEDL 126 (209)
T ss_pred --CeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHHH
Confidence 678999999999999876 8888888999999999875 5688884 568999
Q ss_pred HHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEe---cCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007488 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427 (601)
Q Consensus 351 ~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~ 427 (601)
+|||++|||++++ ++++++++.||+|+++++. ++.++++.+|..
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~---------------------------- 173 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG---------------------------- 173 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCC----------------------------
Confidence 9999999999999 5788889999999999864 456888888754
Q ss_pred HHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 007488 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (601)
Q Consensus 428 er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~ 470 (601)
+..|||+|||+|+.+++|.||+++||++++++++++
T Consensus 174 -------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 -------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 358999999999999999999999999999999874
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.93 E-value=3.8e-25 Score=226.09 Aligned_cols=198 Identities=19% Similarity=0.179 Sum_probs=167.0
Q ss_pred ChhHHHHHHHHHHHhhccC----------CceEE--ecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEe
Q 007488 215 NNYEVGNMIAEAMSKVGRK----------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (601)
Q Consensus 215 ~~~~ls~li~eAi~~vg~~----------g~I~i--~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIl 282 (601)
+.++|++++++|+..+.++ ..|++ .+|++++|| ++++|++|++++.++ .|+..++||||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4689999999999998532 12433 699999999 999999999998775 467789999999
Q ss_pred eecccCCCH------H-----------HHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 283 LVDKKITNA------R-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 283 l~d~~i~~~------~-----------~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
+++++++.. . .+.++++++.+.|+++||++++|++.++++|.++ +|++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 999986432 1 2355788999999999999999999999999876 557777 55
Q ss_pred chhHHHHHHHHhCCeEeeccCCcc-ccCCCCCCceeeeEEEE---ec-----CeEEEEcCCCChhhHHHHHHHHHHHHHh
Q 007488 346 KSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVVL---TK-----DTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (601)
Q Consensus 346 ~~~~L~~ia~~tG~~ii~~~~~~~-l~~~~~~~lG~~~~v~i---~~-----~~~~~i~~~~~~~~i~~r~~~l~~~l~~ 416 (601)
++.+|++||++|||++++ + .+.++++.||+|+.|++ ++ +.+++|.+|..+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 689999999999999998 5 34788899999999985 33 589999988653
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007488 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471 (601)
Q Consensus 417 ~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g 471 (601)
..+||+|||+|+..++|.||+++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.07 E-value=9.5e-10 Score=129.41 Aligned_cols=205 Identities=19% Similarity=0.209 Sum_probs=160.6
Q ss_pred ChhHHHHHHHHHHHhhccC----------Cc--eEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEe
Q 007488 215 NNYEVGNMIAEAMSKVGRK----------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (601)
Q Consensus 215 ~~~~ls~li~eAi~~vg~~----------g~--I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIl 282 (601)
+.+.+..|+.+|...+.++ +. ++.+.||+..|| +++.|+++.+...+ +.|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceE
Confidence 3577888899999888775 12 455799999999 99999999998665 4577789999999
Q ss_pred eecccC---------CCHH--------HHHHHHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 283 LVDKKI---------TNAR--------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 283 l~d~~i---------~~~~--------~l~~~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
++.+++ .+.+ .+..++.++.....+++++.++|++.|..+|... |+.-+. ++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ec
Confidence 988653 3332 2344677888889999999999999999988653 443333 67
Q ss_pred chhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEe--------cCeEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 007488 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT--------KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (601)
Q Consensus 346 ~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~--------~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~ 417 (601)
++..|+||+++||+.++. +++.++...+|+|..+++. ...++|+++|+.+
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~----------------- 531 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP----------------- 531 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-----------------
Confidence 789999999999999998 6888999999999998753 2346788888764
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHH-hcCccccccH
Q 007488 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV-EEGIVVGGGC 478 (601)
Q Consensus 418 ~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~-~~gvvpGGGa 478 (601)
-.|||++||.+..++.+.|+-++-++-++.+.. +.-++.--|+
T Consensus 532 ------------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 532 ------------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGA 575 (1598)
T ss_pred ------------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 257999999999999999999998888887554 3335555554
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0025 Score=71.71 Aligned_cols=88 Identities=22% Similarity=0.250 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCC-EEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHH-HHHHHHhCCeEeeccCCccccC
Q 007488 295 INVLEDAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL-DDIAILTGGTVIRDEVGLALDK 372 (601)
Q Consensus 295 ~~~le~~~~~~~~-lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L-~~ia~~tG~~ii~~~~~~~l~~ 372 (601)
..+++.+.+.|.+ +++++++|+|.++++|..+ .|.+++ ++.++++ ++|+.+|||+.++ .+++
T Consensus 260 ~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~-----~v~~~dl~~~l~~~~ga~~v~-----~~~d 323 (524)
T COG0459 260 ATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGR-----RVKKEDLGERLAKLGGAKIVS-----VLKD 323 (524)
T ss_pred HHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecc-----eecchhhHHHHHHccCceEEe-----eccc
Confidence 4466777889999 8999999999999999876 445544 5567888 7999999999998 6889
Q ss_pred CCCCCcee--eeEEEE---ecCeEEEEcCCC
Q 007488 373 VGKEVLGN--ASKVVL---TKDTTTIVGDGS 398 (601)
Q Consensus 373 ~~~~~lG~--~~~v~i---~~~~~~~i~~~~ 398 (601)
.++..+|. |+.|+. ++++++++.++.
T Consensus 324 ~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 324 LTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred CceeecCccccceEEEeeccchhhhhhhhhh
Confidence 99999999 999974 355666666543
No 47
>smart00574 POX domain associated with HOX domains.
Probab=52.12 E-value=87 Score=29.15 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhh
Q 007488 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKE 492 (601)
Q Consensus 421 ~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~ 492 (601)
.++..++.+.++| -.+++|.+++++-...-++..+..- .|+|+|++-.+.+-+|+..+.
T Consensus 70 ~~r~e~q~kk~kL-------------l~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 70 AERQELQRKKAKL-------------LSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred hHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4556666676665 2567888888888888888887774 889999998888888876654
No 48
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=51.08 E-value=4.9 Score=45.58 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=51.1
Q ss_pred CCCEEEEcccccH-----HHHHHHHHhhhcccc----eEEEeecCCcCCcchhHHHHHHHHhCCeEeecc
Q 007488 305 AYPILIIAEDIEQ-----EALATLVVNKLRGAL----KIAALKAPGFGERKSQYLDDIAILTGGTVIRDE 365 (601)
Q Consensus 305 ~~~lvI~a~~I~~-----~aL~~L~~nk~~g~~----~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~ 365 (601)
..++.|..+++++ +++..++.++++++. ++++++.| +++...++|++..++++.++..++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 4477888888888 888889999988755 88999987 999999999999999998887754
No 49
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=28.74 E-value=1.4e+02 Score=27.86 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHhh
Q 007488 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKE 492 (601)
Q Consensus 422 ~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vvpGGGa~e~~ls~~L~~~~~ 492 (601)
++..++.+.++| -.+++|..++++-...-++..+..- .|.|.|++-.+.+-+|+..+.
T Consensus 71 ~~~e~q~kK~KL-------------l~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 71 ERQELQRKKAKL-------------LSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred hHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 445556666665 2467888888887777777777764 788999998888888877664
No 50
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=2.8e+02 Score=25.21 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCc
Q 007488 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (601)
Q Consensus 297 ~le~~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~ 345 (601)
+.+.+++.|+++||+. .+.+.++..|... .|-+++.++ +++
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~------GIkv~~~~~-~~V 97 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAA------GIKVYVAPG-GTV 97 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHc------CcEEEecCC-CCH
Confidence 5778889999999965 6788888887654 344555565 444
No 51
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=21.89 E-value=90 Score=27.15 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHHHHHHcCCChHHHHHHHHhcCCCeeeEecCCCcccchhhcccccchHHHHHHHHHHHHHHH
Q 007488 514 LKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAK 576 (601)
Q Consensus 514 p~~La~NaG~d~~~vi~kL~~~~~~~~Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~ 576 (601)
-..|..|.++.-..++++|.. ++||| +++-.+-..||||...-.++...++.-+.
T Consensus 31 N~~L~~s~~frNP~i~ekLi~----~~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Q 85 (96)
T PF07818_consen 31 NDRLQNSKSFRNPSILEKLIE----FFGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQ 85 (96)
T ss_pred HHHHHHccccCChHHHHHHHH----HcCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHH
Confidence 355777888877888899875 67887 36667778899999988888887765554
Done!