BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007489
(601 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 61
+ SGS D IR WD + G I+ +T G L SG EL + LVS ++ +V+
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--------KDNILVSGNADSTVK 342
Query: 62 FWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105
WD + G LQ + H+ V L + N V ++ DG V L+
Sbjct: 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 387
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILY 105
VS SV+ WD +L++++ H +VN +AA P + +F S G DG+++L+
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 51 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 51 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 51 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 257
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 51 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 51 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
VS S + WD R G Q + H+ D+NA+ P+ N F+TGSD
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSD 246
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE-LCIWSLLSLRCGTLVSADSTGSV 60
+ + S DG WD + G + G G + LC+ S T VS
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFH------GHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 61 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
WD R G +QA H+ DVN++ PS + F++GSD
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSD 260
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW 63
S S D IR WD + G +Y + +G LL L LVSA + GS++ W
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVG---------LLRLSDKFLVSAAADGSIRGW 377
Query: 64 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106
D+ + + S+H +++A+ + + +GS+ Q +Y
Sbjct: 378 DANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW 63
+G+ D IR +D+ + ++ SG + +W+L G LVS + +V+ W
Sbjct: 137 TGADDKMIRVYDSINKKFLLQL--------SGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
Query: 64 DSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGS-DGQVILYKASCESIGPNDGLSSS 121
D + G H V L N + TGS D + ++K ES P+ G
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 122 EVI------KKWIYVGSVRAHTHDVRALT 144
+ + +VG +R H VR ++
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHMASVRTVS 277
>pdb|2FR7|A Chain A, Crystal Structure Of Cytochrome P450 Cyp199a2
pdb|4DNJ|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a2
Length = 412
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSA 54
+++ GS++ R WD Y+I R T G G GSG +C+ L++ G +V A
Sbjct: 323 LMFLGSANRDPRRWDDPDRYDITRKTSGHVGFGSGVHMCVGQLVARLEGEVVLA 376
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW 63
S S D IR WD + G Y + +G LL L LVSA + GS++ W
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVG---------LLRLSDKFLVSAAADGSIRGW 377
Query: 64 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106
D+ + + S+H +++A+ + + +GS+ Q +Y
Sbjct: 378 DANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 34 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-R 92
SG + +W+L G LVS + +V+ WD + G H V L N +
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 93 VFSTGS-DGQVILYKASCESIGPNDGLSSSEVI------KKWIYVGSVRAHTHDVRALT 144
TGS D + ++K ES P+ G + + +VG +R H VR ++
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG--PELCIWSLLSLRCGTLVSADSTGS 59
L +GS D WD G RI++ SG ++ S+ SL +S +
Sbjct: 173 LITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 60 VQFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99
V+ WD R ++ + H+GD+N++ P R F TGSD
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSD 269
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 52 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILYKASCE 110
VS ++ WD +L ++ H V +AA+P + VF S D +++L+ C
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 111 SIGPNDGLSS 120
G S+
Sbjct: 203 KPASQIGCSA 212
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T++SA + V+ W+ + H ++N L A+P + S G DG+++L+ +
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 110 E 110
+
Sbjct: 222 K 222
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T++SA + V+ W+ + H ++N L A+P + S G DG+++L+ +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 110 E 110
+
Sbjct: 228 K 228
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T++SA + V+ W+ + H ++N L A+P + S G DG+++L+ +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 110 E 110
+
Sbjct: 228 K 228
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 61
+ S S D I+ W+ LG Y I+ G G +S +L+ T+VSA +V+
Sbjct: 487 IVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQP-TIVSASWDKTVK 544
Query: 62 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105
W+ + L + H G V+ +A +P + S G DG V+L+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T++SA + V+ W+ + H ++N L A+P + S G DG+++L+ +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 110 E 110
+
Sbjct: 228 K 228
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T++SA + V+ W+ + H ++N L A+P + S G DG+++L+ +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 110 E 110
+
Sbjct: 228 K 228
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLG 30
++++G+ DGY +++DAK G E+++ G G
Sbjct: 499 LVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T++SA + V+ W+ + H ++N L A+P + S G DG++ L+ +
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 110 E 110
+
Sbjct: 228 K 228
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H VN +A P + S D V L+ +
Sbjct: 235 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 294 QLLQTLTGHSSS 305
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRCGTLVSADSTGS 59
+ S S D ++ W+ + G + +T G +W + S T+ SA +
Sbjct: 317 TIASASDDKTVKLWN-RNGQHLQTLT--------GHSSSVWGVAFSPDGQTIASASDDKT 367
Query: 60 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS 119
V+ W+ R+G LLQ + H V +A +P + S D V L+ + + + G S
Sbjct: 368 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
Query: 120 SS 121
SS
Sbjct: 427 SS 428
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106
T+ SA +V+ W+ R+G LLQ + H V +A +P + S SD V L+
Sbjct: 522 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 130 QLLQTLTGHSSS 141
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 194 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 253 QLLQTLTGHSSS 264
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 440 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 499 QLLQTLTGHSSS 510
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 481 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 540 QLLQTLTGHSSS 551
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 276 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 335 QHLQTLTGHSSS 346
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 399 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 458 QLLQTLTGHSSS 469
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109
T+ SA +V+ W+ R+G LLQ + H V +A +P + S D V L+ +
Sbjct: 153 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211
Query: 110 ESIGPNDGLSSS 121
+ + G SSS
Sbjct: 212 QLLQTLTGHSSS 223
>pdb|4DNZ|A Chain A, The Crystal Structures Of Cyp199a4
pdb|4DNZ|B Chain B, The Crystal Structures Of Cyp199a4
pdb|4DNZ|C Chain C, The Crystal Structures Of Cyp199a4
pdb|4DNZ|D Chain D, The Crystal Structures Of Cyp199a4
pdb|4DO1|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|B Chain B, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|C Chain C, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|D Chain D, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4EGM|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGN|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGO|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGP|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
2-naphthoic Acid
pdb|4EGP|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
2-naphthoic Acid
Length = 410
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 45
+++ GS++ R W Y+I R T G G GSG +C+ L++
Sbjct: 321 LMFLGSANRDPRRWSDPDLYDITRKTSGHVGFGSGVHMCVGQLVA 365
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/150 (17%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 377
+ LP ++ F+ D S ++ + +D + D +S + L T I
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL----------IDDDN 195
Query: 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-QHWFISRLEGASVTAAGFPPQNNNVL 436
PP++ + S +G+++ A D+ +++ + + A F +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 437 IITTSSNQVYVFDVEAKQLGEWSMQHTFVL 466
+ + N VY+++++ K++ + HT V+
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 60 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105
V+ W+ + L H H G +N + +P + S G DGQ +L+
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 60 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105
V+ W+ + L H H G +N + +P + S G DGQ +L+
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 118 LSSSEVIKKWIY--VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175
+++++ +KW+ +G H A++ A+ +PED+V G + Y
Sbjct: 219 MTNAQTARKWVADTLGEAAVGAH-FAAVSTALDKVAAFGIPEDRV---FGFWDWVGGRYS 274
Query: 176 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV-----HNTIFSHT 230
W+ +G+P++I+ G D + A P + +P+ L H I +
Sbjct: 275 VWSAIGLPVMIAVGPD-NFRKFLAGAHAMDVHFRDAPLEKNLPVMLGLIGYWHRAICGYG 333
Query: 231 SLLLVQYSCRLDILSVRLEN 250
S ++ Y RL L L+
Sbjct: 334 SRAIIPYDQRLSRLPAYLQQ 353
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL-GSGPELC--IWSLLSLRCGTLVSADST 57
+L SGS G I D ++ +G L G E+C W L+ L S +
Sbjct: 188 VLSSGSRSGAIHHHDVRIANH------QIGTLQGHSSEVCGLAWRSDGLQ---LASGGND 238
Query: 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASC 109
VQ WD+R + H V A+A P + + +TG D Q+ + A+
Sbjct: 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 331 IFSYD---SSQLIIAGHDR--RIY---VVD-------VSSSELLHTFTPCREEHDREIQP 375
+FSYD + Q G + RIY ++D + L++ + R E P
Sbjct: 43 LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPETDFP 102
Query: 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 435
++ + M D WL A+N +Y + L+ ++ F +R G P N
Sbjct: 103 TD--VRTMALQGDTLWLGALNG---LYTYQLQSRKLTSFDTRRNGL--------PNNTIY 149
Query: 436 LIITTSSNQVYV 447
II T NQ+YV
Sbjct: 150 SIIRTKDNQIYV 161
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV 60
+ +GS D +R WD++ G+ + R+ G+G + ++S++ R G ++VS SV
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLD-SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 61 QFWDSRH------------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105
+ W+ ++ GT + HK V ++A + + S D V+ +
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 331 IFSYD---SSQLIIAGHDR--RIY---VVD-------VSSSELLHTFTPCREEHDREIQP 375
+FSYD + Q G + RIY ++D + L++ + R E P
Sbjct: 43 LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPETDFP 102
Query: 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 435
++ + M D WL A+N +Y + L+ ++ F +R G P N
Sbjct: 103 TD--VRTMALQGDTLWLGALNG---LYTYQLQSRKLTSFDTRRNGL--------PNNTIY 149
Query: 436 LIITTSSNQVYV 447
II T NQ+YV
Sbjct: 150 SIIRTKDNQIYV 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,334,351
Number of Sequences: 62578
Number of extensions: 691056
Number of successful extensions: 1756
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 204
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)