Query 007489
Match_columns 601
No_of_seqs 861 out of 3903
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 11:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2048 WD40 repeat protein [G 100.0 5.2E-58 1.1E-62 426.5 49.5 517 1-601 168-691 (691)
2 KOG0271 Notchless-like WD40 re 100.0 3.7E-51 7.9E-56 355.1 25.8 340 1-449 129-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.2E-49 4.9E-54 344.0 29.1 311 35-485 113-462 (480)
4 KOG0319 WD40-repeat-containing 100.0 2.6E-44 5.6E-49 338.4 34.6 425 1-485 119-600 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.1E-42 4.5E-47 313.0 40.0 402 1-495 162-600 (603)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.5E-44 7.6E-49 315.9 22.0 281 35-449 173-458 (459)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-43 4.1E-48 311.3 23.3 265 1-405 189-458 (459)
8 KOG0318 WD40 repeat stress pro 100.0 5.9E-41 1.3E-45 303.6 37.3 351 1-451 204-602 (603)
9 KOG0315 G-protein beta subunit 100.0 1.1E-41 2.4E-46 279.4 29.2 292 1-428 12-308 (311)
10 KOG0279 G protein beta subunit 100.0 2.6E-40 5.7E-45 276.1 30.4 283 35-452 13-314 (315)
11 KOG0306 WD40-repeat-containing 100.0 5.5E-40 1.2E-44 309.6 36.0 424 1-496 79-621 (888)
12 KOG0319 WD40-repeat-containing 100.0 9.4E-41 2E-45 314.4 30.3 418 1-504 76-585 (775)
13 KOG0291 WD40-repeat-containing 100.0 9E-38 2E-42 294.8 45.2 466 2-591 70-621 (893)
14 KOG0286 G-protein beta subunit 100.0 2.5E-39 5.3E-44 272.0 30.3 291 32-449 50-343 (343)
15 KOG0315 G-protein beta subunit 100.0 2.3E-39 5.1E-44 265.7 29.0 289 50-482 12-308 (311)
16 KOG0273 Beta-transducin family 100.0 3.5E-39 7.6E-44 288.3 29.7 314 1-451 193-523 (524)
17 KOG0291 WD40-repeat-containing 100.0 1.1E-36 2.3E-41 287.6 42.8 427 2-506 111-613 (893)
18 KOG0279 G protein beta subunit 100.0 7.3E-38 1.6E-42 261.5 27.7 275 1-407 30-313 (315)
19 KOG0306 WD40-repeat-containing 100.0 2.9E-37 6.2E-42 291.3 34.5 432 1-496 121-663 (888)
20 KOG0286 G-protein beta subunit 100.0 1.3E-36 2.8E-41 255.6 29.8 276 72-485 49-326 (343)
21 KOG0295 WD40 repeat-containing 100.0 1.6E-37 3.4E-42 268.9 24.3 282 35-449 106-404 (406)
22 KOG0273 Beta-transducin family 100.0 2.3E-36 5.1E-41 270.3 31.5 323 35-505 176-523 (524)
23 KOG0284 Polyadenylation factor 100.0 1.7E-37 3.6E-42 272.6 19.5 283 35-451 94-380 (464)
24 KOG0645 WD40 repeat protein [G 100.0 2.5E-35 5.4E-40 245.3 30.0 287 35-451 12-311 (312)
25 KOG0295 WD40 repeat-containing 100.0 1.1E-36 2.4E-41 263.7 21.7 276 2-406 123-405 (406)
26 KOG0265 U5 snRNP-specific prot 100.0 2.4E-35 5.3E-40 249.0 27.4 285 34-448 44-335 (338)
27 KOG0292 Vesicle coat complex C 100.0 1.3E-34 2.8E-39 278.1 35.6 360 1-495 23-384 (1202)
28 KOG0296 Angio-associated migra 100.0 6.5E-35 1.4E-39 252.9 30.1 330 35-504 62-397 (399)
29 KOG0296 Angio-associated migra 100.0 5.3E-35 1.1E-39 253.5 29.0 312 1-451 78-398 (399)
30 KOG0285 Pleiotropic regulator 100.0 2.4E-35 5.3E-40 254.6 24.6 285 34-453 148-441 (460)
31 KOG0293 WD40 repeat-containing 100.0 1.3E-35 2.9E-40 260.9 21.3 286 35-452 222-514 (519)
32 KOG0263 Transcription initiati 100.0 5.2E-35 1.1E-39 278.9 24.7 306 35-485 376-696 (707)
33 KOG0282 mRNA splicing factor [ 100.0 8.7E-36 1.9E-40 267.7 17.5 284 35-449 212-503 (503)
34 KOG0281 Beta-TrCP (transducin 100.0 1.2E-35 2.6E-40 255.6 16.3 276 36-455 196-481 (499)
35 KOG0645 WD40 repeat protein [G 100.0 1.4E-33 3.1E-38 234.8 27.5 273 1-407 29-311 (312)
36 cd00200 WD40 WD40 domain, foun 100.0 3.9E-33 8.6E-38 264.0 33.1 281 35-449 7-289 (289)
37 KOG0285 Pleiotropic regulator 100.0 1.1E-33 2.5E-38 244.3 25.5 275 1-408 165-440 (460)
38 KOG0263 Transcription initiati 100.0 4.1E-34 9E-39 272.8 24.7 235 1-408 392-650 (707)
39 KOG0316 Conserved WD40 repeat- 100.0 6.7E-33 1.4E-37 226.0 25.0 281 35-449 15-297 (307)
40 KOG0282 mRNA splicing factor [ 100.0 1.4E-34 3.1E-39 260.0 16.8 268 1-405 229-503 (503)
41 KOG0284 Polyadenylation factor 100.0 3.1E-34 6.7E-39 252.1 17.3 266 1-406 110-379 (464)
42 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.8E-37 271.3 30.9 286 35-451 157-454 (456)
43 PLN00181 protein SPA1-RELATED; 100.0 8.3E-32 1.8E-36 286.5 37.6 305 8-450 457-792 (793)
44 KOG0276 Vesicle coat complex C 100.0 1.5E-31 3.3E-36 247.6 34.1 264 1-402 27-294 (794)
45 KOG0281 Beta-TrCP (transducin 100.0 3.8E-34 8.3E-39 246.3 15.2 263 1-411 209-481 (499)
46 KOG1539 WD repeat protein [Gen 100.0 1.9E-31 4.2E-36 255.2 35.0 402 2-500 217-651 (910)
47 KOG0265 U5 snRNP-specific prot 100.0 3.5E-32 7.7E-37 229.9 26.2 272 1-405 61-336 (338)
48 KOG1446 Histone H3 (Lys4) meth 100.0 1E-30 2.2E-35 223.6 32.5 291 35-455 12-307 (311)
49 KOG0313 Microtubule binding pr 100.0 8.9E-32 1.9E-36 234.7 26.6 282 1-406 117-417 (423)
50 KOG0973 Histone transcription 100.0 6.2E-32 1.4E-36 267.1 28.5 308 35-457 11-361 (942)
51 KOG0266 WD40 repeat-containing 100.0 3.5E-32 7.5E-37 268.2 26.5 270 1-407 173-454 (456)
52 KOG0278 Serine/threonine kinas 100.0 5.3E-33 1.2E-37 228.6 16.9 269 1-411 31-301 (334)
53 KOG0292 Vesicle coat complex C 100.0 1E-30 2.2E-35 251.4 34.7 293 35-454 7-324 (1202)
54 KOG0313 Microtubule binding pr 100.0 2.2E-31 4.8E-36 232.2 25.6 306 35-451 103-418 (423)
55 KOG0293 WD40 repeat-containing 100.0 4.3E-32 9.2E-37 239.0 20.8 267 1-408 238-514 (519)
56 KOG0316 Conserved WD40 repeat- 100.0 2.6E-31 5.6E-36 216.7 23.1 262 1-405 31-297 (307)
57 KOG1407 WD40 repeat protein [F 100.0 8.4E-31 1.8E-35 217.2 25.9 271 35-442 18-293 (313)
58 KOG1063 RNA polymerase II elon 100.0 4.6E-30 9.9E-35 240.9 32.5 411 1-485 71-675 (764)
59 KOG1408 WD40 repeat protein [F 100.0 1.4E-29 3.1E-34 238.0 35.9 448 1-504 92-712 (1080)
60 KOG0275 Conserved WD40 repeat- 100.0 1E-31 2.2E-36 229.3 18.9 285 35-449 211-507 (508)
61 cd00200 WD40 WD40 domain, foun 100.0 2.6E-30 5.6E-35 244.7 30.8 265 1-405 23-289 (289)
62 KOG0276 Vesicle coat complex C 100.0 4.6E-31 1E-35 244.5 24.3 283 35-451 11-298 (794)
63 KOG0772 Uncharacterized conser 100.0 2.3E-30 4.9E-35 234.6 23.9 306 34-449 164-485 (641)
64 KOG0278 Serine/threonine kinas 100.0 3.5E-31 7.6E-36 217.9 17.0 285 35-455 12-301 (334)
65 KOG0275 Conserved WD40 repeat- 100.0 2.2E-31 4.8E-36 227.3 16.2 277 1-405 227-507 (508)
66 KOG2048 WD40 repeat protein [G 100.0 5.8E-28 1.3E-32 226.5 39.9 414 2-504 40-547 (691)
67 KOG0310 Conserved WD40 repeat- 100.0 4.2E-30 9.2E-35 231.8 24.6 267 3-409 43-311 (487)
68 KOG1063 RNA polymerase II elon 100.0 8.7E-30 1.9E-34 239.0 27.6 421 1-485 208-734 (764)
69 KOG0288 WD40 repeat protein Ti 100.0 4.6E-31 9.9E-36 232.7 17.7 282 34-448 172-458 (459)
70 PLN00181 protein SPA1-RELATED; 100.0 3.8E-29 8.2E-34 266.2 33.5 279 1-406 497-792 (793)
71 KOG2096 WD40 repeat protein [G 100.0 5.4E-29 1.2E-33 212.3 27.5 323 12-449 64-400 (420)
72 KOG2106 Uncharacterized conser 100.0 1.1E-27 2.4E-32 216.7 36.4 336 6-449 177-519 (626)
73 KOG0274 Cdc4 and related F-box 100.0 1.4E-29 3E-34 248.0 26.2 264 1-455 220-486 (537)
74 KOG1539 WD repeat protein [Gen 100.0 6.1E-28 1.3E-32 231.4 36.5 401 1-485 174-587 (910)
75 KOG1408 WD40 repeat protein [F 100.0 5.1E-29 1.1E-33 234.4 27.6 320 2-452 339-714 (1080)
76 KOG0288 WD40 repeat protein Ti 100.0 3.9E-30 8.5E-35 226.8 17.1 266 1-404 189-458 (459)
77 KOG0643 Translation initiation 100.0 3.6E-29 7.7E-34 208.2 21.0 292 34-453 7-319 (327)
78 KOG0772 Uncharacterized conser 100.0 4.6E-29 1E-33 226.2 22.0 313 72-506 161-487 (641)
79 KOG0277 Peroxisomal targeting 100.0 8.4E-29 1.8E-33 204.6 20.1 265 8-450 37-308 (311)
80 KOG1407 WD40 repeat protein [F 100.0 1E-27 2.2E-32 198.9 25.8 269 72-485 14-283 (313)
81 KOG0640 mRNA cleavage stimulat 100.0 1.9E-28 4.1E-33 208.2 21.9 295 72-485 106-407 (430)
82 KOG0283 WD40 repeat-containing 100.0 1.6E-28 3.5E-33 236.8 24.0 250 35-410 265-579 (712)
83 KOG0973 Histone transcription 100.0 1.4E-28 3E-33 243.5 22.9 276 1-409 27-357 (942)
84 KOG0308 Conserved WD40 repeat- 100.0 8E-29 1.7E-33 230.9 19.5 320 1-454 39-396 (735)
85 KOG0305 Anaphase promoting com 100.0 1.6E-27 3.4E-32 224.2 28.1 265 2-409 191-463 (484)
86 KOG0283 WD40 repeat-containing 100.0 3.2E-28 6.9E-33 234.8 23.7 272 72-454 260-579 (712)
87 KOG0299 U3 snoRNP-associated p 100.0 1.3E-27 2.8E-32 214.1 25.4 288 35-448 140-453 (479)
88 KOG0289 mRNA splicing factor [ 100.0 5.8E-27 1.3E-31 208.2 28.3 282 37-450 219-505 (506)
89 KOG0643 Translation initiation 100.0 7E-27 1.5E-31 194.7 27.0 280 73-485 5-298 (327)
90 KOG2106 Uncharacterized conser 100.0 2E-26 4.3E-31 208.6 31.7 374 2-450 216-625 (626)
91 KOG0647 mRNA export protein (c 100.0 3E-27 6.6E-32 200.4 24.7 279 35-395 25-311 (347)
92 KOG0294 WD40 repeat-containing 100.0 1.2E-26 2.7E-31 197.9 27.8 272 2-410 4-284 (362)
93 KOG0268 Sof1-like rRNA process 100.0 1.4E-28 2.9E-33 213.5 16.1 280 34-453 63-347 (433)
94 KOG1036 Mitotic spindle checkp 100.0 5.3E-27 1.2E-31 199.8 25.1 278 35-441 11-294 (323)
95 KOG0641 WD40 repeat protein [G 100.0 8.3E-26 1.8E-30 183.5 30.6 295 36-451 31-349 (350)
96 KOG0310 Conserved WD40 repeat- 100.0 6.9E-27 1.5E-31 211.1 26.2 284 35-454 24-312 (487)
97 KOG0640 mRNA cleavage stimulat 100.0 1.4E-27 2.9E-32 203.0 20.4 294 35-450 110-425 (430)
98 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-26 8.8E-31 195.5 29.0 272 1-407 28-303 (311)
99 KOG0305 Anaphase promoting com 100.0 4.2E-27 9.1E-32 221.3 25.1 274 43-453 183-463 (484)
100 KOG0301 Phospholipase A2-activ 100.0 1.1E-26 2.3E-31 218.5 27.4 273 35-451 12-288 (745)
101 PTZ00421 coronin; Provisional 100.0 4.3E-26 9.3E-31 223.6 32.4 298 36-509 19-345 (493)
102 KOG0300 WD40 repeat-containing 100.0 2.7E-27 5.8E-32 201.9 20.0 301 35-453 146-478 (481)
103 KOG0268 Sof1-like rRNA process 100.0 5.1E-28 1.1E-32 210.0 15.5 266 2-410 82-348 (433)
104 KOG0289 mRNA splicing factor [ 100.0 1.2E-26 2.6E-31 206.2 24.4 267 1-406 233-505 (506)
105 KOG0299 U3 snoRNP-associated p 100.0 1.4E-26 3.1E-31 207.5 24.9 266 1-395 156-443 (479)
106 PTZ00421 coronin; Provisional 100.0 5.9E-26 1.3E-30 222.6 30.6 259 2-388 35-314 (493)
107 PTZ00420 coronin; Provisional 100.0 4E-26 8.6E-31 224.5 28.9 246 4-430 49-316 (568)
108 KOG0308 Conserved WD40 repeat- 100.0 3.4E-27 7.4E-32 220.1 18.9 296 35-451 19-327 (735)
109 KOG1036 Mitotic spindle checkp 100.0 2.8E-26 6.1E-31 195.4 22.9 262 1-397 27-294 (323)
110 KOG0274 Cdc4 and related F-box 100.0 2.6E-26 5.6E-31 225.1 26.0 274 36-506 207-483 (537)
111 PTZ00420 coronin; Provisional 100.0 1.2E-25 2.7E-30 221.0 29.7 256 53-485 49-317 (568)
112 KOG0301 Phospholipase A2-activ 99.9 4.6E-26 1E-30 214.3 24.4 259 1-407 27-288 (745)
113 KOG1332 Vesicle coat complex C 99.9 9.2E-27 2E-31 191.4 16.8 250 35-452 9-287 (299)
114 KOG0300 WD40 repeat-containing 99.9 4.6E-26 9.9E-31 194.4 20.0 273 2-409 163-478 (481)
115 KOG0277 Peroxisomal targeting 99.9 7.4E-26 1.6E-30 187.2 20.6 264 41-485 12-289 (311)
116 KOG1445 Tumor-specific antigen 99.9 1.5E-25 3.2E-30 208.5 24.9 166 276-454 628-801 (1012)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-24 5.3E-29 205.2 34.1 288 1-430 3-300 (300)
118 KOG2096 WD40 repeat protein [G 99.9 1.8E-24 3.8E-29 185.0 27.3 314 60-503 63-400 (420)
119 KOG0294 WD40 repeat-containing 99.9 4.7E-25 1E-29 188.3 23.5 245 71-453 36-283 (362)
120 KOG0646 WD40 repeat protein [G 99.9 7.2E-25 1.6E-29 197.1 25.5 293 9-485 18-330 (476)
121 KOG2055 WD40 repeat protein [G 99.9 3.2E-25 6.8E-30 198.9 23.0 285 36-451 212-512 (514)
122 KOG0639 Transducin-like enhanc 99.9 5.5E-26 1.2E-30 205.6 18.0 263 2-406 434-703 (705)
123 KOG2445 Nuclear pore complex c 99.9 3E-24 6.4E-29 182.8 24.6 280 34-407 10-318 (361)
124 KOG4283 Transcription-coupled 99.9 2.4E-24 5.2E-29 182.1 23.1 294 1-406 58-364 (397)
125 KOG1274 WD40 repeat protein [G 99.9 4.7E-24 1E-28 207.4 28.1 281 35-448 11-297 (933)
126 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.3E-29 179.4 20.1 246 1-408 25-287 (299)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.6E-23 5.7E-28 198.1 32.6 291 50-484 3-300 (300)
128 KOG0646 WD40 repeat protein [G 99.9 1.4E-24 3E-29 195.3 21.3 260 7-388 59-330 (476)
129 KOG0647 mRNA export protein (c 99.9 7.4E-25 1.6E-29 186.0 18.2 264 1-343 42-312 (347)
130 KOG1273 WD40 repeat protein [G 99.9 5.9E-24 1.3E-28 181.5 22.8 287 40-453 26-324 (405)
131 KOG1274 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 202.0 29.4 270 76-486 11-282 (933)
132 KOG0264 Nucleosome remodeling 99.9 6.1E-24 1.3E-28 190.8 22.1 266 76-453 122-406 (422)
133 KOG0639 Transducin-like enhanc 99.9 4.9E-24 1.1E-28 193.1 20.7 280 35-450 417-703 (705)
134 KOG0641 WD40 repeat protein [G 99.9 2E-21 4.3E-26 158.2 32.4 294 77-485 31-330 (350)
135 KOG0321 WD40 repeat-containing 99.9 3.2E-23 6.9E-28 193.4 23.0 315 42-453 54-393 (720)
136 KOG0650 WD40 repeat nucleolar 99.9 6E-23 1.3E-27 190.1 24.3 298 34-448 397-732 (733)
137 KOG2055 WD40 repeat protein [G 99.9 7.6E-23 1.6E-27 183.7 23.0 273 1-407 227-512 (514)
138 KOG0264 Nucleosome remodeling 99.9 6.5E-23 1.4E-27 184.2 21.5 264 35-408 122-405 (422)
139 KOG0321 WD40 repeat-containing 99.9 6.4E-23 1.4E-27 191.4 21.9 301 1-409 66-393 (720)
140 KOG1009 Chromatin assembly com 99.9 6.2E-22 1.3E-26 175.2 24.5 307 37-456 13-377 (434)
141 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-22 3.8E-27 182.8 20.9 285 10-433 13-305 (673)
142 KOG2445 Nuclear pore complex c 99.9 1.6E-21 3.6E-26 166.2 25.5 266 75-452 10-319 (361)
143 KOG0267 Microtubule severing p 99.9 4.5E-24 9.8E-29 201.8 10.7 252 3-443 8-260 (825)
144 KOG4328 WD40 protein [Function 99.9 7.5E-22 1.6E-26 177.2 24.2 295 35-452 184-496 (498)
145 KOG1273 WD40 repeat protein [G 99.9 8.9E-22 1.9E-26 168.3 23.1 274 1-407 37-322 (405)
146 KOG1538 Uncharacterized conser 99.9 8.1E-21 1.8E-25 178.3 30.8 270 39-406 14-292 (1081)
147 KOG0269 WD40 repeat-containing 99.9 1.6E-22 3.5E-27 193.0 19.5 243 39-453 89-342 (839)
148 KOG1445 Tumor-specific antigen 99.9 2.8E-21 6.2E-26 180.3 27.1 111 338-454 642-753 (1012)
149 KOG0650 WD40 repeat nucleolar 99.9 5.9E-22 1.3E-26 183.6 21.4 321 73-497 395-724 (733)
150 KOG4283 Transcription-coupled 99.9 5E-21 1.1E-25 162.2 24.9 299 33-451 39-365 (397)
151 KOG1009 Chromatin assembly com 99.9 5.1E-22 1.1E-26 175.7 19.1 297 1-411 28-376 (434)
152 KOG0302 Ribosome Assembly prot 99.9 5.1E-21 1.1E-25 167.7 21.6 255 230-503 164-436 (440)
153 KOG4378 Nuclear protein COP1 [ 99.9 6.4E-21 1.4E-25 172.8 22.4 287 57-485 11-304 (673)
154 KOG0269 WD40 repeat-containing 99.9 3.3E-22 7.2E-27 190.9 14.3 230 1-356 102-342 (839)
155 KOG0267 Microtubule severing p 99.9 1E-22 2.2E-27 192.8 10.0 217 2-399 43-260 (825)
156 KOG1034 Transcriptional repres 99.9 4.7E-22 1E-26 171.0 12.7 257 1-354 107-383 (385)
157 KOG2919 Guanine nucleotide-bin 99.9 5.4E-20 1.2E-24 158.1 24.2 293 81-485 52-351 (406)
158 KOG1034 Transcriptional repres 99.9 9.4E-21 2E-25 163.1 19.3 303 2-406 58-382 (385)
159 KOG4328 WD40 protein [Function 99.9 4.6E-20 1E-24 165.9 24.1 281 1-407 202-495 (498)
160 KOG0302 Ribosome Assembly prot 99.9 2.4E-20 5.2E-25 163.5 19.9 246 35-449 149-436 (440)
161 KOG4497 Uncharacterized conser 99.9 6.3E-20 1.4E-24 158.1 20.0 352 43-504 14-430 (447)
162 KOG0322 G-protein beta subunit 99.9 3.1E-20 6.8E-25 155.0 15.8 304 34-406 11-322 (323)
163 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-20 3.2E-25 173.6 14.6 260 35-412 292-566 (577)
164 KOG0644 Uncharacterized conser 99.8 1.2E-20 2.6E-25 181.6 14.1 280 34-454 187-471 (1113)
165 KOG0307 Vesicle coat complex C 99.8 1.7E-20 3.7E-25 187.6 15.6 290 42-454 11-330 (1049)
166 KOG1538 Uncharacterized conser 99.8 2.2E-19 4.7E-24 168.9 21.2 275 80-453 14-295 (1081)
167 KOG1188 WD40 repeat protein [G 99.8 2.8E-19 6.2E-24 155.0 20.2 288 1-453 42-348 (376)
168 KOG1963 WD40 repeat protein [G 99.8 3.4E-18 7.3E-23 166.7 29.7 369 8-455 180-587 (792)
169 KOG0270 WD40 repeat-containing 99.8 7.3E-20 1.6E-24 164.1 16.8 242 1-359 194-454 (463)
170 KOG0307 Vesicle coat complex C 99.8 8E-20 1.7E-24 182.8 18.3 248 37-410 64-330 (1049)
171 KOG1963 WD40 repeat protein [G 99.8 6.9E-17 1.5E-21 157.7 37.5 418 4-507 32-540 (792)
172 KOG0270 WD40 repeat-containing 99.8 7.1E-19 1.5E-23 157.8 19.9 233 50-454 194-452 (463)
173 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-16 2.3E-21 161.5 38.4 306 5-452 130-443 (466)
174 KOG2919 Guanine nucleotide-bin 99.8 3.3E-18 7.2E-23 147.2 21.4 277 40-441 52-360 (406)
175 KOG0322 G-protein beta subunit 99.8 4.4E-19 9.5E-24 148.2 15.6 296 70-450 6-322 (323)
176 KOG0644 Uncharacterized conser 99.8 9.9E-20 2.1E-24 175.4 13.2 287 69-506 181-469 (1113)
177 COG2319 FOG: WD40 repeat [Gene 99.8 9.1E-16 2E-20 154.8 42.8 331 2-485 80-423 (466)
178 KOG4227 WD40 repeat protein [G 99.8 4.3E-18 9.4E-23 150.1 20.8 297 34-451 53-387 (609)
179 PRK11028 6-phosphogluconolacto 99.8 1.7E-16 3.6E-21 152.3 34.0 281 3-407 6-304 (330)
180 KOG1334 WD40 repeat protein [G 99.8 6.1E-19 1.3E-23 160.0 15.6 307 33-454 138-469 (559)
181 KOG1523 Actin-related protein 99.8 4.3E-18 9.2E-23 146.5 19.8 218 276-509 11-240 (361)
182 PRK11028 6-phosphogluconolacto 99.8 2.7E-16 5.8E-21 150.8 33.6 280 51-451 5-304 (330)
183 KOG1310 WD40 repeat protein [G 99.8 1.4E-17 3.1E-22 153.3 22.0 233 33-357 46-306 (758)
184 KOG1517 Guanine nucleotide bin 99.8 2.6E-17 5.7E-22 163.0 24.2 304 39-455 1066-1385(1387)
185 KOG1007 WD repeat protein TSSC 99.8 3.4E-17 7.4E-22 138.8 21.6 206 266-485 114-341 (370)
186 KOG4497 Uncharacterized conser 99.8 5.3E-18 1.2E-22 146.3 16.6 338 2-443 23-424 (447)
187 KOG1524 WD40 repeat-containing 99.8 1.7E-17 3.6E-22 152.5 20.1 266 35-450 12-285 (737)
188 PF02239 Cytochrom_D1: Cytochr 99.8 6.6E-16 1.4E-20 147.0 30.5 317 2-455 9-351 (369)
189 KOG2110 Uncharacterized conser 99.8 2.7E-15 5.8E-20 132.1 30.1 238 36-407 4-248 (391)
190 KOG1007 WD repeat protein TSSC 99.8 1.2E-16 2.5E-21 135.6 20.4 280 56-452 38-362 (370)
191 KOG0303 Actin-binding protein 99.8 4.6E-17 1E-21 144.0 18.3 234 318-600 75-316 (472)
192 KOG2110 Uncharacterized conser 99.8 1.2E-15 2.5E-20 134.3 26.6 158 276-453 88-250 (391)
193 KOG1587 Cytoplasmic dynein int 99.8 3.3E-16 7.1E-21 152.9 25.8 281 9-408 222-517 (555)
194 KOG4227 WD40 repeat protein [G 99.8 1.9E-16 4.2E-21 139.9 21.0 320 72-510 50-399 (609)
195 KOG0771 Prolactin regulatory e 99.8 3.8E-17 8.1E-22 146.3 16.8 205 41-408 148-355 (398)
196 KOG0649 WD40 repeat protein [G 99.7 6.6E-16 1.4E-20 127.8 21.9 263 79-452 11-275 (325)
197 KOG0771 Prolactin regulatory e 99.7 4.3E-16 9.3E-21 139.6 21.9 163 274-453 185-356 (398)
198 KOG0642 Cell-cycle nuclear pro 99.7 3.2E-17 7E-22 151.8 15.2 241 2-364 309-571 (577)
199 KOG1310 WD40 repeat protein [G 99.7 2.9E-16 6.4E-21 144.8 20.9 155 1-201 64-232 (758)
200 KOG1587 Cytoplasmic dynein int 99.7 5E-16 1.1E-20 151.6 23.7 288 58-453 222-518 (555)
201 KOG1517 Guanine nucleotide bin 99.7 6.8E-16 1.5E-20 153.2 23.6 288 2-410 1079-1384(1387)
202 KOG2111 Uncharacterized conser 99.7 9.3E-15 2E-19 126.2 26.7 178 193-408 76-257 (346)
203 KOG1523 Actin-related protein 99.7 1.5E-15 3.3E-20 131.0 21.5 249 77-443 9-270 (361)
204 COG2706 3-carboxymuconate cycl 99.7 1.7E-14 3.6E-19 127.6 28.2 292 238-585 15-324 (346)
205 KOG0303 Actin-binding protein 99.7 7.8E-16 1.7E-20 136.3 19.5 206 33-357 77-297 (472)
206 KOG0649 WD40 repeat protein [G 99.7 3.2E-15 7E-20 123.8 21.5 230 221-485 12-257 (325)
207 KOG1524 WD40 repeat-containing 99.7 6.9E-15 1.5E-19 135.5 25.3 201 2-299 78-281 (737)
208 KOG1354 Serine/threonine prote 99.7 6.3E-15 1.4E-19 128.4 22.6 305 78-454 25-362 (433)
209 PRK01742 tolB translocation pr 99.7 2E-15 4.3E-20 149.2 21.6 233 57-430 183-425 (429)
210 KOG0290 Conserved WD40 repeat- 99.7 4.1E-15 8.9E-20 126.5 20.2 238 35-398 94-357 (364)
211 KOG0290 Conserved WD40 repeat- 99.7 3.6E-15 7.8E-20 126.9 18.9 251 221-500 98-360 (364)
212 KOG1334 WD40 repeat protein [G 99.7 1.7E-16 3.7E-21 144.3 11.7 296 1-411 156-470 (559)
213 PRK01742 tolB translocation pr 99.7 3.4E-15 7.3E-20 147.6 21.8 170 279-485 251-426 (429)
214 KOG1240 Protein kinase contain 99.7 6E-15 1.3E-19 148.9 23.1 318 14-449 1034-1431(1431)
215 KOG1188 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 126.9 20.1 263 91-485 41-327 (376)
216 KOG2139 WD40 repeat protein [G 99.7 9.2E-14 2E-18 122.1 25.4 291 2-452 113-432 (445)
217 KOG1240 Protein kinase contain 99.7 3.1E-14 6.8E-19 143.9 24.0 277 63-455 1034-1338(1431)
218 KOG0974 WD-repeat protein WDR6 99.6 8.1E-13 1.8E-17 132.0 31.7 140 1-201 147-289 (967)
219 PF08662 eIF2A: Eukaryotic tra 99.6 5.5E-14 1.2E-18 121.4 20.5 153 279-455 9-183 (194)
220 PF10282 Lactonase: Lactonase, 99.6 3E-12 6.6E-17 122.6 34.5 291 239-582 13-322 (345)
221 PF02239 Cytochrom_D1: Cytochr 99.6 5.8E-13 1.3E-17 127.0 29.0 323 50-505 8-347 (369)
222 KOG2394 WD40 protein DMR-N9 [G 99.6 3.7E-14 8.1E-19 130.9 18.9 93 276-387 291-384 (636)
223 PRK04922 tolB translocation pr 99.6 8.2E-14 1.8E-18 138.0 23.0 236 58-430 184-432 (433)
224 KOG2321 WD40 repeat protein [G 99.6 2.7E-13 5.8E-18 126.3 24.5 188 285-494 144-331 (703)
225 PF10282 Lactonase: Lactonase, 99.6 5.1E-12 1.1E-16 121.1 33.7 307 51-428 2-345 (345)
226 KOG2315 Predicted translation 99.6 3.2E-12 7E-17 119.2 29.6 319 38-455 35-394 (566)
227 PRK03629 tolB translocation pr 99.6 3.1E-13 6.8E-18 133.2 24.5 235 58-430 179-427 (429)
228 KOG2315 Predicted translation 99.6 1.7E-12 3.7E-17 121.0 27.2 323 2-430 48-410 (566)
229 PRK03629 tolB translocation pr 99.6 1E-12 2.2E-17 129.6 27.5 171 278-485 245-428 (429)
230 KOG2394 WD40 protein DMR-N9 [G 99.6 3.4E-14 7.4E-19 131.1 15.6 183 285-484 183-384 (636)
231 KOG2111 Uncharacterized conser 99.6 1.2E-11 2.6E-16 107.3 29.9 169 266-455 87-260 (346)
232 PRK04922 tolB translocation pr 99.6 4.4E-13 9.5E-18 132.9 23.7 170 278-484 250-432 (433)
233 KOG2139 WD40 repeat protein [G 99.6 3E-12 6.6E-17 112.7 24.8 298 78-505 98-431 (445)
234 KOG3881 Uncharacterized conser 99.6 1.4E-12 2.9E-17 116.1 22.4 224 221-485 107-342 (412)
235 PRK02889 tolB translocation pr 99.6 9.4E-13 2E-17 130.0 24.1 238 58-430 176-424 (427)
236 KOG3881 Uncharacterized conser 99.6 7E-13 1.5E-17 117.9 20.4 274 35-430 53-341 (412)
237 PRK02889 tolB translocation pr 99.6 1.8E-12 4E-17 128.0 26.0 175 276-485 240-425 (427)
238 COG5354 Uncharacterized protei 99.6 6.9E-12 1.5E-16 115.6 27.4 320 35-455 30-399 (561)
239 PRK05137 tolB translocation pr 99.6 3.4E-12 7.5E-17 126.8 27.6 156 276-454 246-415 (435)
240 KOG1272 WD40-repeat-containing 99.6 3.2E-14 6.8E-19 129.0 11.7 258 78-485 129-390 (545)
241 PRK05137 tolB translocation pr 99.5 2.4E-12 5.3E-17 127.8 25.7 235 58-430 182-432 (435)
242 COG4946 Uncharacterized protei 99.5 1E-10 2.2E-15 107.0 32.7 201 228-455 275-481 (668)
243 KOG1354 Serine/threonine prote 99.5 5.3E-13 1.1E-17 116.6 17.4 288 36-357 24-362 (433)
244 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.5E-17 113.2 18.0 134 239-410 37-182 (194)
245 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.3E-10 4.9E-15 106.4 32.7 269 9-417 27-340 (352)
246 KOG2314 Translation initiation 99.5 6E-11 1.3E-15 110.6 28.2 315 39-455 212-577 (698)
247 KOG0974 WD-repeat protein WDR6 99.5 4.2E-11 9.1E-16 120.1 29.1 183 1-250 101-291 (967)
248 KOG1912 WD40 repeat protein [G 99.5 5.9E-11 1.3E-15 115.0 28.9 367 2-454 29-554 (1062)
249 KOG1409 Uncharacterized conser 99.5 1.4E-11 3E-16 108.0 20.5 339 35-452 22-395 (404)
250 KOG2321 WD40 repeat protein [G 99.5 2.5E-11 5.5E-16 113.4 22.9 292 35-460 49-353 (703)
251 TIGR03300 assembly_YfgL outer 99.5 9E-11 2E-15 114.9 28.5 307 2-448 68-376 (377)
252 COG2706 3-carboxymuconate cycl 99.4 2.7E-09 5.9E-14 95.1 32.8 302 57-429 15-345 (346)
253 KOG1272 WD40-repeat-containing 99.4 8.2E-13 1.8E-17 120.0 10.5 173 7-247 189-362 (545)
254 PRK01029 tolB translocation pr 99.4 1.5E-10 3.3E-15 113.7 26.0 134 278-430 283-424 (428)
255 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.1E-09 4.5E-14 100.1 30.9 236 190-455 75-334 (352)
256 KOG1912 WD40 repeat protein [G 99.4 6E-10 1.3E-14 108.2 27.6 364 40-485 18-478 (1062)
257 PRK01029 tolB translocation pr 99.4 3.2E-10 6.9E-15 111.4 26.8 177 278-485 233-425 (428)
258 TIGR02800 propeller_TolB tol-p 99.4 3E-10 6.5E-15 113.3 26.5 153 276-453 234-399 (417)
259 PF04762 IKI3: IKI3 family; I 99.4 5.3E-08 1.2E-12 103.7 44.0 325 36-454 74-459 (928)
260 PRK04792 tolB translocation pr 99.4 2E-10 4.4E-15 113.8 24.2 235 59-430 199-446 (448)
261 TIGR02800 propeller_TolB tol-p 99.4 2.2E-10 4.7E-15 114.3 24.4 235 57-428 169-416 (417)
262 PRK04792 tolB translocation pr 99.4 5.2E-10 1.1E-14 110.9 26.3 172 279-485 265-447 (448)
263 PRK00178 tolB translocation pr 99.4 7.6E-10 1.6E-14 110.4 27.4 171 278-485 245-428 (430)
264 KOG2041 WD40 repeat protein [G 99.3 3.1E-09 6.7E-14 102.4 29.6 455 1-510 28-624 (1189)
265 PRK00178 tolB translocation pr 99.3 3.2E-10 6.9E-15 113.1 24.4 235 59-430 180-427 (430)
266 COG5354 Uncharacterized protei 99.3 8.7E-10 1.9E-14 102.0 23.1 319 9-443 53-421 (561)
267 COG5170 CDC55 Serine/threonine 99.3 7.7E-11 1.7E-15 101.9 15.3 304 77-453 25-369 (460)
268 COG4946 Uncharacterized protei 99.3 3.8E-08 8.3E-13 90.5 30.0 172 283-485 274-454 (668)
269 TIGR03300 assembly_YfgL outer 99.2 7.5E-09 1.6E-13 101.4 27.5 274 48-455 65-342 (377)
270 PRK11138 outer membrane biogen 99.2 3E-08 6.6E-13 97.4 31.4 316 2-450 72-393 (394)
271 KOG2041 WD40 repeat protein [G 99.2 3.7E-09 8.1E-14 101.9 22.7 277 35-439 12-326 (1189)
272 PF04762 IKI3: IKI3 family; I 99.2 3.6E-07 7.7E-12 97.6 39.4 371 38-506 22-457 (928)
273 KOG1409 Uncharacterized conser 99.2 4.2E-09 9.1E-14 92.7 19.1 256 68-453 14-272 (404)
274 KOG4547 WD40 repeat-containing 99.2 1.4E-09 3E-14 102.8 17.2 172 285-485 3-195 (541)
275 KOG2314 Translation initiation 99.2 7E-08 1.5E-12 90.6 27.9 339 50-495 180-556 (698)
276 KOG4532 WD40-like repeat conta 99.1 2.6E-08 5.7E-13 84.7 21.4 239 184-454 86-334 (344)
277 PLN02919 haloacid dehalogenase 99.1 8.3E-08 1.8E-12 104.4 30.6 75 380-455 806-892 (1057)
278 KOG3914 WD repeat protein WDR4 99.1 1.1E-09 2.4E-14 98.6 13.5 160 277-455 64-227 (390)
279 KOG1064 RAVE (regulator of V-A 99.1 2.4E-10 5.1E-15 120.7 10.3 203 35-419 2206-2410(2439)
280 KOG4547 WD40 repeat-containing 99.1 8.7E-09 1.9E-13 97.5 19.0 144 288-452 71-221 (541)
281 KOG0882 Cyclophilin-related pe 99.1 1E-08 2.2E-13 93.6 18.2 305 35-448 7-369 (558)
282 KOG0280 Uncharacterized conser 99.1 2.3E-08 4.9E-13 86.3 18.2 117 40-203 124-244 (339)
283 COG5170 CDC55 Serine/threonine 99.0 3.4E-08 7.3E-13 85.9 17.0 274 35-353 24-366 (460)
284 PRK11138 outer membrane biogen 99.0 4.3E-07 9.3E-12 89.3 27.1 273 48-455 69-357 (394)
285 KOG4190 Uncharacterized conser 99.0 2.2E-09 4.7E-14 100.3 9.9 252 130-449 728-986 (1034)
286 PRK04043 tolB translocation pr 99.0 3.9E-07 8.5E-12 89.1 25.1 111 280-412 281-405 (419)
287 PRK04043 tolB translocation pr 99.0 1.1E-06 2.4E-11 86.0 27.5 189 277-506 189-401 (419)
288 KOG4190 Uncharacterized conser 98.9 3.9E-09 8.4E-14 98.7 9.7 281 35-447 733-1032(1034)
289 KOG4532 WD40-like repeat conta 98.9 5.1E-07 1.1E-11 77.1 20.7 245 48-411 84-335 (344)
290 KOG0280 Uncharacterized conser 98.9 2.5E-07 5.4E-12 80.1 19.1 168 293-485 92-264 (339)
291 KOG0882 Cyclophilin-related pe 98.9 1.5E-07 3.4E-12 86.1 16.3 261 77-455 8-309 (558)
292 PF13360 PQQ_2: PQQ-like domai 98.8 1E-06 2.2E-11 80.3 21.8 97 7-111 1-97 (238)
293 PF15492 Nbas_N: Neuroblastoma 98.8 5.7E-06 1.2E-10 72.1 24.4 71 41-111 1-76 (282)
294 KOG1064 RAVE (regulator of V-A 98.8 2E-08 4.3E-13 106.8 10.9 172 2-249 2223-2400(2439)
295 PLN02919 haloacid dehalogenase 98.8 2.4E-06 5.2E-11 93.2 26.8 271 3-358 584-892 (1057)
296 PF08450 SGL: SMP-30/Gluconola 98.8 2.5E-05 5.4E-10 71.4 29.3 186 278-495 42-244 (246)
297 PF08450 SGL: SMP-30/Gluconola 98.8 3.7E-05 8E-10 70.3 29.7 107 276-396 134-244 (246)
298 KOG3914 WD repeat protein WDR4 98.8 3E-07 6.5E-12 83.2 15.0 162 223-414 66-230 (390)
299 PF15492 Nbas_N: Neuroblastoma 98.8 8.2E-06 1.8E-10 71.1 23.0 204 225-454 3-262 (282)
300 KOG4649 PQQ (pyrrolo-quinoline 98.8 4E-05 8.7E-10 65.7 26.3 103 1-112 25-127 (354)
301 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.2E-13 62.0 4.6 39 68-106 1-39 (39)
302 PF06433 Me-amine-dh_H: Methyl 98.7 7.6E-06 1.6E-10 74.6 23.2 242 191-455 66-324 (342)
303 KOG1920 IkappaB kinase complex 98.7 9.4E-06 2E-10 84.2 26.3 145 327-496 198-355 (1265)
304 KOG1645 RING-finger-containing 98.7 2.6E-06 5.5E-11 77.3 19.6 271 60-407 175-461 (463)
305 KOG2695 WD40 repeat protein [G 98.7 1.2E-07 2.5E-12 83.9 10.6 169 287-485 225-403 (425)
306 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.3E-10 73.6 24.1 159 286-455 76-234 (238)
307 PF07433 DUF1513: Protein of u 98.7 2.6E-06 5.6E-11 76.7 18.5 220 10-297 29-278 (305)
308 KOG1920 IkappaB kinase complex 98.7 5.4E-05 1.2E-09 78.8 29.9 183 276-506 196-393 (1265)
309 PF00400 WD40: WD domain, G-be 98.6 1E-07 2.2E-12 58.2 6.0 39 356-405 1-39 (39)
310 cd00216 PQQ_DH Dehydrogenases 98.6 8.2E-05 1.8E-09 75.1 30.3 107 2-112 64-187 (488)
311 KOG4714 Nucleoporin [Nuclear s 98.6 1.3E-06 2.8E-11 74.4 12.3 143 2-201 104-255 (319)
312 PF07433 DUF1513: Protein of u 98.6 5E-05 1.1E-09 68.5 23.0 247 41-401 8-279 (305)
313 KOG3617 WD40 and TPR repeat-co 98.6 3.7E-06 8E-11 83.5 17.0 72 38-109 60-132 (1416)
314 KOG4714 Nucleoporin [Nuclear s 98.5 4.8E-07 1E-11 76.9 8.9 73 38-110 180-256 (319)
315 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00046 9.9E-09 59.4 26.4 108 45-204 18-127 (354)
316 PF06433 Me-amine-dh_H: Methyl 98.5 6.3E-05 1.4E-09 68.7 21.8 275 58-419 17-332 (342)
317 cd00216 PQQ_DH Dehydrogenases 98.5 0.00023 4.9E-09 72.0 28.1 99 338-455 303-428 (488)
318 KOG0309 Conserved WD40 repeat- 98.5 7.6E-07 1.6E-11 86.8 9.2 145 9-208 91-240 (1081)
319 KOG2114 Vacuolar assembly/sort 98.5 5.8E-05 1.3E-09 75.6 22.1 126 275-417 125-253 (933)
320 KOG1832 HIV-1 Vpr-binding prot 98.4 2.7E-07 5.9E-12 91.7 6.0 216 35-341 1099-1318(1516)
321 KOG2114 Vacuolar assembly/sort 98.4 7.6E-05 1.6E-09 74.8 22.5 213 39-363 27-252 (933)
322 KOG2695 WD40 repeat protein [G 98.4 1.5E-06 3.3E-11 77.0 9.8 130 276-418 253-387 (425)
323 PRK02888 nitrous-oxide reducta 98.4 9.1E-05 2E-09 73.5 22.4 158 266-452 227-405 (635)
324 KOG3621 WD40 repeat-containing 98.4 3.1E-05 6.8E-10 75.8 18.0 102 1-109 47-155 (726)
325 KOG3621 WD40 repeat-containing 98.4 0.00027 5.9E-09 69.5 24.2 122 35-201 31-155 (726)
326 PF11768 DUF3312: Protein of u 98.4 0.003 6.5E-08 61.5 32.4 73 324-409 259-331 (545)
327 KOG2066 Vacuolar assembly/sort 98.3 2.4E-05 5.3E-10 77.6 16.2 185 276-503 40-233 (846)
328 KOG1832 HIV-1 Vpr-binding prot 98.3 5.5E-07 1.2E-11 89.6 5.0 226 69-439 1092-1319(1516)
329 KOG0309 Conserved WD40 repeat- 98.3 9.6E-06 2.1E-10 79.4 11.6 219 233-485 84-310 (1081)
330 KOG2066 Vacuolar assembly/sort 98.2 0.00013 2.8E-09 72.7 18.5 177 1-247 51-233 (846)
331 KOG1897 Damage-specific DNA bi 98.2 0.011 2.3E-07 61.1 33.5 154 278-453 777-944 (1096)
332 PF06977 SdiA-regulated: SdiA- 98.2 0.0012 2.6E-08 58.9 22.6 207 276-502 22-247 (248)
333 PF11768 DUF3312: Protein of u 98.1 2.2E-05 4.8E-10 75.7 11.3 105 376-485 258-368 (545)
334 KOG1275 PAB-dependent poly(A) 98.1 6.1E-05 1.3E-09 75.9 14.4 180 50-303 149-341 (1118)
335 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0033 7.2E-08 60.8 26.1 53 57-111 22-74 (353)
336 KOG1275 PAB-dependent poly(A) 98.1 3.2E-05 7E-10 77.8 11.9 179 2-245 150-340 (1118)
337 PF14583 Pectate_lyase22: Olig 98.1 0.0023 5E-08 60.0 23.0 157 275-451 187-381 (386)
338 PRK02888 nitrous-oxide reducta 98.1 0.0007 1.5E-08 67.4 20.0 159 331-506 199-405 (635)
339 KOG3617 WD40 and TPR repeat-co 98.0 0.00018 3.8E-09 72.1 15.6 109 43-203 21-134 (1416)
340 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0058 1.2E-07 59.1 25.7 192 279-505 104-315 (353)
341 PF04053 Coatomer_WDAD: Coatom 98.0 0.0009 1.9E-08 65.6 20.0 144 275-453 32-175 (443)
342 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.024 5.3E-07 57.6 32.8 63 48-112 69-142 (527)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.026 5.6E-07 57.5 31.2 109 2-112 72-193 (527)
344 KOG1645 RING-finger-containing 98.0 0.00039 8.5E-09 63.6 15.0 80 319-410 188-269 (463)
345 PF06977 SdiA-regulated: SdiA- 97.9 0.012 2.6E-07 52.7 23.5 176 267-448 56-247 (248)
346 PF04841 Vps16_N: Vps16, N-ter 97.9 0.03 6.6E-07 55.0 28.2 210 266-503 72-285 (410)
347 PF08596 Lgl_C: Lethal giant l 97.9 0.016 3.6E-07 56.1 25.6 269 80-452 3-336 (395)
348 COG0823 TolB Periplasmic compo 97.9 0.00059 1.3E-08 66.6 15.9 156 275-454 192-361 (425)
349 PF08553 VID27: VID27 cytoplas 97.9 0.0017 3.6E-08 67.3 19.6 124 266-406 516-646 (794)
350 COG3386 Gluconolactonase [Carb 97.9 0.018 3.8E-07 53.6 24.6 148 325-498 111-277 (307)
351 COG0823 TolB Periplasmic compo 97.8 0.0015 3.2E-08 63.8 17.8 99 280-397 286-389 (425)
352 PF05096 Glu_cyclase_2: Glutam 97.8 0.011 2.4E-07 52.6 21.4 204 275-504 44-258 (264)
353 KOG1897 Damage-specific DNA bi 97.8 0.061 1.3E-06 55.9 39.2 362 38-495 488-887 (1096)
354 KOG4640 Anaphase-promoting com 97.8 0.00012 2.6E-09 70.9 9.7 94 325-430 21-115 (665)
355 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0034 7.3E-08 47.2 14.9 101 327-446 2-109 (111)
356 KOG4640 Anaphase-promoting com 97.8 0.00016 3.5E-09 70.1 9.6 97 376-485 19-116 (665)
357 PF04841 Vps16_N: Vps16, N-ter 97.7 0.017 3.7E-07 56.7 23.7 105 331-453 185-289 (410)
358 PF00780 CNH: CNH domain; Int 97.7 0.045 9.7E-07 51.0 27.0 153 286-455 104-259 (275)
359 KOG1008 Uncharacterized conser 97.7 3.8E-05 8.2E-10 74.3 4.2 160 275-452 102-276 (783)
360 COG3391 Uncharacterized conser 97.7 0.067 1.4E-06 52.3 29.8 281 11-430 13-308 (381)
361 PRK13616 lipoprotein LpqB; Pro 97.7 0.0068 1.5E-07 62.1 20.2 196 276-503 350-565 (591)
362 PF03178 CPSF_A: CPSF A subuni 97.7 0.0092 2E-07 57.0 20.2 169 266-453 14-204 (321)
363 PF03178 CPSF_A: CPSF A subuni 97.6 0.025 5.4E-07 54.0 22.0 158 274-450 87-264 (321)
364 PF02897 Peptidase_S9_N: Proly 97.6 0.11 2.3E-06 51.9 29.0 165 278-458 229-411 (414)
365 PF07995 GSDH: Glucose / Sorbo 97.5 0.093 2E-06 50.1 26.6 56 40-96 4-69 (331)
366 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0037 8.1E-08 47.0 11.7 88 2-103 18-109 (111)
367 PF04053 Coatomer_WDAD: Coatom 97.5 0.028 6E-07 55.4 21.1 110 278-408 147-263 (443)
368 COG3386 Gluconolactonase [Carb 97.5 0.044 9.4E-07 51.1 21.0 115 269-396 156-274 (307)
369 smart00320 WD40 WD40 repeats. 97.5 0.00016 3.6E-09 43.4 3.6 38 69-106 3-40 (40)
370 COG3204 Uncharacterized protei 97.5 0.064 1.4E-06 47.9 20.4 215 275-504 85-311 (316)
371 PF08553 VID27: VID27 cytoplas 97.4 0.0043 9.4E-08 64.4 15.2 101 3-108 546-647 (794)
372 KOG1008 Uncharacterized conser 97.4 0.00018 3.9E-09 69.9 4.5 102 2-110 73-186 (783)
373 smart00320 WD40 WD40 repeats. 97.4 0.00054 1.2E-08 41.0 5.2 38 19-64 2-40 (40)
374 COG3391 Uncharacterized conser 97.3 0.048 1E-06 53.3 20.9 196 277-506 75-284 (381)
375 PF08596 Lgl_C: Lethal giant l 97.3 0.062 1.3E-06 52.2 21.2 72 39-111 3-118 (395)
376 COG3490 Uncharacterized protei 97.3 0.07 1.5E-06 47.3 19.0 109 17-159 56-174 (366)
377 COG3490 Uncharacterized protei 97.3 0.02 4.4E-07 50.5 14.9 81 11-97 93-180 (366)
378 KOG4499 Ca2+-binding protein R 97.2 0.092 2E-06 45.1 18.1 97 278-386 160-262 (310)
379 PF14583 Pectate_lyase22: Olig 97.2 0.21 4.5E-06 47.4 29.2 164 324-505 187-383 (386)
380 PRK13616 lipoprotein LpqB; Pro 97.0 0.18 4E-06 51.9 21.5 114 276-403 448-564 (591)
381 PF12894 Apc4_WD40: Anaphase-p 96.8 0.004 8.7E-08 38.9 5.2 32 376-407 10-41 (47)
382 COG3204 Uncharacterized protei 96.8 0.17 3.7E-06 45.3 16.9 175 318-506 79-264 (316)
383 KOG2444 WD40 repeat protein [G 96.8 0.0019 4.1E-08 54.9 4.8 101 2-110 73-179 (238)
384 TIGR03074 PQQ_membr_DH membran 96.8 0.97 2.1E-05 48.1 29.1 95 345-439 640-743 (764)
385 KOG2395 Protein involved in va 96.7 0.051 1.1E-06 52.4 13.4 123 266-406 368-499 (644)
386 COG3823 Glutamine cyclotransfe 96.6 0.11 2.4E-06 43.8 13.6 193 286-504 55-256 (262)
387 KOG2079 Vacuolar assembly/sort 96.6 0.041 8.9E-07 57.7 13.5 99 2-109 102-204 (1206)
388 PF05694 SBP56: 56kDa selenium 96.6 0.34 7.3E-06 46.4 18.4 109 3-112 92-234 (461)
389 PF00780 CNH: CNH domain; Int 96.6 0.61 1.3E-05 43.4 26.2 194 278-506 38-256 (275)
390 PF14870 PSII_BNR: Photosynthe 96.6 0.62 1.4E-05 43.3 30.1 155 276-448 145-301 (302)
391 KOG2444 WD40 repeat protein [G 96.6 0.011 2.3E-07 50.5 7.4 104 336-452 70-178 (238)
392 COG5290 IkappaB kinase complex 96.6 0.081 1.7E-06 53.6 14.4 115 378-506 247-367 (1243)
393 PF12894 Apc4_WD40: Anaphase-p 96.4 0.012 2.5E-07 36.8 5.3 31 421-452 12-42 (47)
394 PF10647 Gmad1: Lipoprotein Lp 96.4 0.3 6.5E-06 44.5 16.8 142 326-485 25-176 (253)
395 KOG2079 Vacuolar assembly/sort 96.3 0.02 4.3E-07 59.9 9.2 103 335-451 98-203 (1206)
396 KOG4441 Proteins containing BT 96.2 0.86 1.9E-05 47.0 20.6 65 335-412 475-551 (571)
397 PF12234 Rav1p_C: RAVE protein 96.1 0.43 9.4E-06 48.8 17.2 115 324-451 29-156 (631)
398 PHA02713 hypothetical protein; 96.0 0.84 1.8E-05 47.2 19.1 65 335-412 463-538 (557)
399 KOG2280 Vacuolar assembly/sort 95.8 2.1 4.6E-05 43.9 19.8 41 324-364 216-256 (829)
400 COG4257 Vgb Streptogramin lyas 95.8 1.3 2.9E-05 39.4 22.6 238 223-506 65-306 (353)
401 PF02897 Peptidase_S9_N: Proly 95.7 2.4 5.3E-05 42.2 28.6 77 34-111 119-213 (414)
402 TIGR02604 Piru_Ver_Nterm putat 95.7 0.58 1.3E-05 45.6 16.1 153 276-442 14-204 (367)
403 KOG2395 Protein involved in va 95.6 0.31 6.7E-06 47.3 13.0 144 334-504 343-499 (644)
404 KOG3630 Nuclear pore complex, 95.5 0.21 4.4E-06 53.1 12.4 158 268-439 93-261 (1405)
405 PF10647 Gmad1: Lipoprotein Lp 95.5 1.9 4E-05 39.4 24.4 71 277-347 113-188 (253)
406 PF13449 Phytase-like: Esteras 95.5 2.4 5.1E-05 40.5 24.6 174 276-451 20-249 (326)
407 KOG4441 Proteins containing BT 95.5 2.8 6.2E-05 43.3 20.7 101 2-111 288-407 (571)
408 PHA02713 hypothetical protein; 95.5 1.8 4E-05 44.7 19.4 65 388-455 463-537 (557)
409 PF15390 DUF4613: Domain of un 95.5 0.66 1.4E-05 46.0 14.7 127 322-455 54-190 (671)
410 PF15390 DUF4613: Domain of un 95.4 0.87 1.9E-05 45.2 15.4 120 275-406 56-185 (671)
411 PF08728 CRT10: CRT10; InterP 95.2 1.1 2.4E-05 46.4 16.1 165 287-451 49-246 (717)
412 KOG2377 Uncharacterized conser 95.1 0.77 1.7E-05 43.9 13.4 119 323-453 65-187 (657)
413 KOG3630 Nuclear pore complex, 95.1 1.1 2.4E-05 48.0 15.8 101 278-394 158-260 (1405)
414 PF05694 SBP56: 56kDa selenium 95.0 3.6 7.9E-05 39.8 19.9 214 286-512 86-349 (461)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 95.0 3.8 8.3E-05 40.0 24.1 50 38-88 57-118 (415)
416 TIGR02604 Piru_Ver_Nterm putat 95.0 1.9 4E-05 42.1 17.0 102 325-440 14-142 (367)
417 COG5276 Uncharacterized conser 94.8 3 6.6E-05 37.6 23.0 198 221-453 88-287 (370)
418 PF14870 PSII_BNR: Photosynthe 94.6 3.9 8.4E-05 38.1 32.4 172 281-485 109-286 (302)
419 PF14761 HPS3_N: Hermansky-Pud 94.6 2.7 6E-05 36.3 15.8 149 337-504 29-213 (215)
420 PF12234 Rav1p_C: RAVE protein 94.5 1.6 3.5E-05 44.8 15.3 123 378-507 30-158 (631)
421 PF14269 Arylsulfotran_2: Aryl 94.4 4.3 9.4E-05 38.0 17.1 125 326-451 58-220 (299)
422 KOG2280 Vacuolar assembly/sort 94.4 4.9 0.00011 41.4 17.9 169 267-454 76-249 (829)
423 KOG2377 Uncharacterized conser 94.2 1.3 2.7E-05 42.5 12.7 135 327-485 25-164 (657)
424 TIGR03074 PQQ_membr_DH membran 94.2 9.6 0.00021 40.9 24.2 111 345-455 335-481 (764)
425 PF14781 BBS2_N: Ciliary BBSom 94.1 2.2 4.7E-05 33.6 11.8 109 331-454 5-128 (136)
426 PF10313 DUF2415: Uncharacteri 94.0 0.33 7.2E-06 29.4 5.6 30 379-408 2-34 (43)
427 PRK10115 protease 2; Provision 93.9 2.5 5.5E-05 44.9 16.2 111 326-451 128-255 (686)
428 KOG2247 WD40 repeat-containing 93.9 0.0038 8.3E-08 59.2 -4.0 114 2-146 49-168 (615)
429 COG4590 ABC-type uncharacteriz 93.8 2.5 5.4E-05 40.5 13.7 160 276-454 221-389 (733)
430 PRK13684 Ycf48-like protein; P 93.7 6.8 0.00015 37.5 29.4 156 276-450 173-330 (334)
431 TIGR03606 non_repeat_PQQ dehyd 93.7 8.1 0.00018 38.4 26.7 33 78-110 29-61 (454)
432 PF14727 PHTB1_N: PTHB1 N-term 93.6 7.8 0.00017 38.0 31.4 60 50-109 39-106 (418)
433 KOG1916 Nuclear protein, conta 93.6 0.23 5E-06 51.4 7.3 99 9-108 153-265 (1283)
434 PF10313 DUF2415: Uncharacteri 93.6 0.32 6.9E-06 29.4 5.1 31 422-452 2-34 (43)
435 COG5276 Uncharacterized conser 93.6 5.6 0.00012 36.1 25.5 154 39-250 88-244 (370)
436 PF10168 Nup88: Nuclear pore c 93.4 2.6 5.6E-05 44.7 14.7 82 325-407 85-179 (717)
437 PF07569 Hira: TUP1-like enhan 93.3 0.76 1.6E-05 40.7 9.4 67 385-453 18-97 (219)
438 KOG1916 Nuclear protein, conta 93.3 0.13 2.9E-06 53.0 5.1 99 296-407 153-265 (1283)
439 PF10168 Nup88: Nuclear pore c 93.2 14 0.0003 39.4 27.0 81 276-356 85-181 (717)
440 PLN00033 photosystem II stabil 93.0 9.6 0.00021 37.3 19.3 153 277-448 240-396 (398)
441 KOG3616 Selective LIM binding 92.7 4.1 8.9E-05 41.7 14.1 71 36-109 13-84 (1636)
442 PF10214 Rrn6: RNA polymerase 92.4 15 0.00032 40.0 19.3 173 275-452 79-277 (765)
443 TIGR03606 non_repeat_PQQ dehyd 92.1 14 0.00029 36.9 18.6 63 273-336 27-90 (454)
444 PF07569 Hira: TUP1-like enhan 91.9 1.9 4.1E-05 38.2 10.0 81 331-412 17-100 (219)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 1.7 3.6E-05 42.5 9.9 44 376-419 306-349 (415)
446 PF10214 Rrn6: RNA polymerase 91.5 24 0.00052 38.4 23.5 118 377-506 145-277 (765)
447 PF05096 Glu_cyclase_2: Glutam 91.4 11 0.00023 34.2 18.9 183 184-395 58-249 (264)
448 PF03022 MRJP: Major royal jel 91.0 11 0.00023 35.2 14.5 98 10-110 35-161 (287)
449 COG5167 VID27 Protein involved 90.9 11 0.00023 37.1 14.2 69 40-109 565-633 (776)
450 KOG4460 Nuclear pore complex, 90.5 4.5 9.7E-05 39.7 11.4 86 326-414 105-205 (741)
451 PHA03098 kelch-like protein; P 90.5 15 0.00032 38.2 16.7 103 335-454 389-514 (534)
452 PHA03098 kelch-like protein; P 90.4 19 0.00041 37.4 17.4 62 48-111 342-417 (534)
453 PF14727 PHTB1_N: PTHB1 N-term 90.3 19 0.00042 35.4 26.9 157 183-353 38-203 (418)
454 TIGR03118 PEPCTERM_chp_1 conse 89.8 16 0.00035 33.6 22.5 71 38-108 23-118 (336)
455 PF08728 CRT10: CRT10; InterP 89.8 3.6 7.9E-05 42.8 11.0 105 2-107 117-245 (717)
456 TIGR02276 beta_rpt_yvtn 40-res 89.7 2.3 5.1E-05 25.6 6.3 41 387-429 1-42 (42)
457 PHA02790 Kelch-like protein; P 89.5 27 0.00058 35.6 17.7 60 48-109 271-340 (480)
458 PF05935 Arylsulfotrans: Aryls 89.3 27 0.00059 35.5 17.3 163 281-454 153-370 (477)
459 COG1520 FOG: WD40-like repeat 89.2 23 0.0005 34.6 26.3 103 2-111 71-174 (370)
460 COG3292 Predicted periplasmic 89.1 27 0.00058 35.2 22.6 113 326-454 377-494 (671)
461 PHA02790 Kelch-like protein; P 88.8 30 0.00064 35.3 19.2 103 334-455 361-474 (480)
462 TIGR02276 beta_rpt_yvtn 40-res 88.4 2.6 5.7E-05 25.3 5.9 31 334-364 1-32 (42)
463 KOG1898 Splicing factor 3b, su 88.2 43 0.00094 36.5 31.7 61 50-111 551-621 (1205)
464 KOG4659 Uncharacterized conser 88.1 47 0.001 37.2 17.6 268 42-402 369-686 (1899)
465 PF07676 PD40: WD40-like Beta 87.7 2.8 6.1E-05 24.8 5.5 29 376-404 7-38 (39)
466 COG5167 VID27 Protein involved 87.5 32 0.00068 34.1 15.9 61 335-407 572-632 (776)
467 PF03088 Str_synth: Strictosid 87.1 9.7 0.00021 27.9 8.8 51 395-448 33-84 (89)
468 PF10395 Utp8: Utp8 family; I 87.1 42 0.0009 35.0 23.8 227 263-505 59-305 (670)
469 COG4590 ABC-type uncharacteriz 86.9 1.6 3.4E-05 41.8 5.8 171 320-512 216-393 (733)
470 PF12657 TFIIIC_delta: Transcr 86.9 5.5 0.00012 33.8 8.8 33 421-453 86-123 (173)
471 PF05935 Arylsulfotrans: Aryls 86.8 31 0.00068 35.0 15.5 113 330-455 153-305 (477)
472 PF07250 Glyoxal_oxid_N: Glyox 86.6 5.5 0.00012 35.7 8.8 50 60-109 48-100 (243)
473 PRK10115 protease 2; Provision 86.6 50 0.0011 35.5 24.7 110 276-406 127-254 (686)
474 PF12768 Rax2: Cortical protei 86.5 6.6 0.00014 36.2 9.6 96 398-504 15-122 (281)
475 KOG1900 Nuclear pore complex, 86.4 22 0.00048 39.5 14.5 76 276-355 179-273 (1311)
476 PF12768 Rax2: Cortical protei 85.6 21 0.00046 33.0 12.3 115 8-146 15-145 (281)
477 TIGR03118 PEPCTERM_chp_1 conse 85.4 31 0.00066 31.9 25.3 79 342-430 218-307 (336)
478 PF07676 PD40: WD40-like Beta 85.3 2.5 5.5E-05 25.0 4.4 30 76-105 6-38 (39)
479 PF11725 AvrE: Pathogenicity f 84.7 68 0.0015 37.2 17.3 96 376-485 658-754 (1774)
480 KOG4499 Ca2+-binding protein R 84.1 29 0.00063 30.5 19.5 104 328-439 161-272 (310)
481 PF12657 TFIIIC_delta: Transcr 82.9 5.3 0.00012 33.9 7.0 30 80-109 87-122 (173)
482 COG4257 Vgb Streptogramin lyas 82.6 38 0.00081 30.7 20.9 163 276-457 148-311 (353)
483 PF07250 Glyoxal_oxid_N: Glyox 82.2 38 0.00082 30.5 12.8 134 280-420 71-210 (243)
484 KOG4460 Nuclear pore complex, 82.1 57 0.0012 32.5 16.7 76 378-453 104-200 (741)
485 PF11715 Nup160: Nucleoporin N 82.0 7.5 0.00016 40.4 9.1 82 334-415 156-256 (547)
486 PF14761 HPS3_N: Hermansky-Pud 81.9 34 0.00074 29.8 16.9 48 230-292 29-76 (215)
487 KOG1900 Nuclear pore complex, 81.7 34 0.00073 38.3 13.4 171 227-408 87-273 (1311)
488 COG3292 Predicted periplasmic 81.4 65 0.0014 32.6 18.3 136 343-504 351-490 (671)
489 KOG2247 WD40 repeat-containing 80.8 0.36 7.8E-06 46.5 -0.9 132 328-485 38-170 (615)
490 PF10433 MMS1_N: Mono-function 80.2 75 0.0016 32.7 28.8 129 287-430 371-503 (504)
491 COG5290 IkappaB kinase complex 79.9 11 0.00023 39.3 8.6 68 40-109 249-325 (1243)
492 smart00564 PQQ beta-propeller 79.3 5.5 0.00012 22.3 4.1 25 391-415 8-32 (33)
493 PF13449 Phytase-like: Esteras 78.9 62 0.0013 30.9 17.4 116 324-441 19-166 (326)
494 PRK13684 Ycf48-like protein; P 78.6 64 0.0014 31.0 30.5 148 324-498 172-323 (334)
495 PF12341 DUF3639: Protein of u 78.2 6.2 0.00013 21.2 3.6 26 421-449 2-27 (27)
496 smart00564 PQQ beta-propeller 76.8 4 8.6E-05 22.9 3.0 24 2-25 9-32 (33)
497 TIGR03032 conserved hypothetic 76.0 69 0.0015 29.9 22.0 48 335-396 212-259 (335)
498 PF01436 NHL: NHL repeat; Int 75.9 9.4 0.0002 20.6 4.1 25 380-404 4-28 (28)
499 PRK13613 lipoprotein LpqB; Pro 75.6 96 0.0021 32.5 14.4 158 326-506 364-540 (599)
500 PLN02153 epithiospecifier prot 75.0 82 0.0018 30.3 17.8 54 399-454 217-287 (341)
No 1
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-58 Score=426.50 Aligned_cols=517 Identities=32% Similarity=0.519 Sum_probs=414.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
.||+||.||.|++||+.++..++..+....+..++....||+|.|..+++||+|++.|+|++||...|++++.+..|.+.
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDAD 247 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence 38999999999999999999988666555666667889999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
|.||+.++++++++++|.|+.|..|...+.. ..|+....+..|.++|++++.. +
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~-------------~~wv~~~~r~~h~hdvrs~av~---------~---- 301 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNK-------------SEWVINSRRDLHAHDVRSMAVI---------E---- 301 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCc-------------cceeeeccccCCcccceeeeee---------c----
Confidence 9999999999999999999999999988765 2399899999999999999986 2
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe-CC
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY-SC 239 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 239 (601)
..+++||.|..+.+-..+.+...........+.+. .+...+..++++.. ..
T Consensus 302 ----------------------~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~------~v~~a~~~~L~~~w~~h 353 (691)
T KOG2048|consen 302 ----------------------NALISGGRDFTLAICSSREFKNMDHRQKNLFPASD------RVSVAPENRLLVLWKAH 353 (691)
T ss_pred ----------------------ceEEecceeeEEEEccccccCchhhhccccccccc------eeecCccceEEEEeccc
Confidence 28999999999999887764433222222222221 22334555555544 68
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
.+.+|.+.... ..|+.++..+.++..+....|.|.++||+|++|+.+.-..+++|.+.... ..++ .....
T Consensus 354 ~v~lwrlGS~~-------~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~--~~v~~ 423 (691)
T KOG2048|consen 354 GVDLWRLGSVI-------LQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKV--INVDD 423 (691)
T ss_pred cccceeccCcc-------cccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeE--EEecc
Confidence 99999998653 23456778899999999999999999999999999999999999999732 2222 22223
Q ss_pred CCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
.+...-.+..+.|+-|++.++.++ ....+.++++.+.. .+..+... .....|+.++.||||+|||+.+
T Consensus 424 ~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---------~~~~~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 424 VPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---------AKCPSISRLVVSSDGNYIAAIS 494 (691)
T ss_pred chhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc---------cCCCcceeEEEcCCCCEEEEEe
Confidence 334444678899999999888888 66788888876543 33333321 1567899999999999999999
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCc
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE 476 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
.+|.|.+|++++.+.......+. ..+++++|+|.+.+.|+++.++++++-||++..+++.|++.++..+|..+......
T Consensus 495 t~g~I~v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~ 573 (691)
T KOG2048|consen 495 TRGQIFVYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPG 573 (691)
T ss_pred ccceEEEEEcccceeecchhccC-cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCC
Confidence 99999999999999887766665 68999999976888999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCEEEEEcCceEEEEeCCCCCCCCccCccccCCchhhhhhccCCccccccccc-cccccccccccCCcc
Q 007489 477 VIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKL-RDCQTESNKLHGRKN 555 (601)
Q Consensus 477 v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~ 555 (601)
+.++.|+|. +..++++|+..|+|++|++.|++.+++..+.. +++. .+++.-|+. .+..-.+...+.+.+
T Consensus 574 ~~gisfd~~-n~s~~~~~~a~w~~~id~~~~lp~~~~~~~~~-----~~kt----~egn~~~~~~~g~~l~~~~~~~~~~ 643 (691)
T KOG2048|consen 574 IPGISFDPK-NSSRFIVYDAHWSCLIDFSLPLPSDEDGPLKA-----LKKT----REGNLTRLLVNGNRLREYGEENGDG 643 (691)
T ss_pred CceEEeCCC-CccEEEEEcCcEEEEEecCCCCCchhhccccc-----CCcc----cccchhhhhcccccchhhcccCCcc
Confidence 999999987 89999999999999999999998777432221 0000 011111100 000001123345668
Q ss_pred eEEEeeccceEEeeecCCCeEEEEec-CHHHHHhcCCC-CcccccCCC
Q 007489 556 FEFFAFRDPVLFIGHLSKSSMLIIDK-PWLEVVKTFDA-PVHRHIYGT 601 (601)
Q Consensus 556 ~~~~~~~~~~l~~~~~~~~~lv~~e~-p~~~~~~~lp~-~~~~~~~g~ 601 (601)
|++..+|+|+||++.++++||++||| |+.++.+++|| ||+|||||+
T Consensus 644 f~~t~~y~pllfv~~ls~nel~~ver~pl~d~~~~~p~~~f~~kKFG~ 691 (691)
T KOG2048|consen 644 FKITKKYRPLLFVGLLSPNELVNVERVPLEDTGKSLPPTPFKRKKFGT 691 (691)
T ss_pred cceeccccceeeecccCCcceEEEEecchHHhhccCCCCcceecccCC
Confidence 99999999999999999999999999 99999999998 899999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-51 Score=355.08 Aligned_cols=340 Identities=18% Similarity=0.265 Sum_probs=271.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchh-hhccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL-QAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~-~~~~~h~ 78 (601)
.||||+-|.++|+||+.+..++.+++ +|..+|.||+|+||| .||+|+.||+|++||.++|+++ ..|.+|.
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~K--------gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCK--------GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeec--------CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc
Confidence 48999999999999999999999999 999999999999999 9999999999999999998876 6799999
Q ss_pred cceEEEEEeC-----CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 79 GDVNALAAAP-----SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 79 ~~V~~l~~s~-----~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
..|++++|.| ..++|++++.||.|+|||+..+.+ +..+.+|+..|+|+.|-
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-----------------~~~lsgHT~~VTCvrwG------- 256 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-----------------VRTLSGHTASVTCVRWG------- 256 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceE-----------------EEEeccCccceEEEEEc-------
Confidence 9999999976 567999999999999999999875 78899999999999984
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC---CcCCCccCCCCCccceeeeeccccCCC
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT---KFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
.+ .++++|+.|++|++|+..... .+.+|. ..+..++.+.+
T Consensus 257 --G~-------------------------gliySgS~DrtIkvw~a~dG~~~r~lkGHa----------hwvN~lalsTd 299 (480)
T KOG0271|consen 257 --GE-------------------------GLIYSGSQDRTIKVWRALDGKLCRELKGHA----------HWVNHLALSTD 299 (480)
T ss_pred --CC-------------------------ceEEecCCCceEEEEEccchhHHHhhcccc----------hheeeeeccch
Confidence 23 399999999999999988733 233333 44555544433
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
-.+-... ++...... .+.. +...+.+.+. . ...-..+..+++ ++|.++.+|+... ..
T Consensus 300 y~LRtga--------f~~t~~~~--~~~s-e~~~~Al~rY-----~----~~~~~~~erlVSgsDd~tlflW~p~~--~k 357 (480)
T KOG0271|consen 300 YVLRTGA--------FDHTGRKP--KSFS-EEQKKALERY-----E----AVLKDSGERLVSGSDDFTLFLWNPFK--SK 357 (480)
T ss_pred hhhhccc--------cccccccC--CChH-HHHHHHHHHH-----H----HhhccCcceeEEecCCceEEEecccc--cc
Confidence 2110000 00000000 0000 0000000000 0 001112456666 7899999998765 12
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
+.+ ..+.+|..-|+.+.||||++++|+++.|..|++|+-.+|+.+.+|.+ |-..|..++||.|.
T Consensus 358 kpi-----~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-----------Hv~~VYqvawsaDs 421 (480)
T KOG0271|consen 358 KPI-----TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-----------HVAAVYQVAWSADS 421 (480)
T ss_pred cch-----hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-----------ccceeEEEEeccCc
Confidence 222 56789999999999999999999999999999999999999999999 99999999999999
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
++|++|+.|.++++|++.+.+....++. |...|.++.|+| ||..+++|+.|..+++|.
T Consensus 422 RLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTKKLKQDLPG-HADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cEEEEcCCCceEEEEEeeeeeecccCCC-CCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 9999999999999999999999888885 567999999999 999999999999999994
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-49 Score=343.98 Aligned_cols=311 Identities=19% Similarity=0.249 Sum_probs=268.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
||...|.|++|+|+| .||+|+.|.++++||+.+.+++.+.++|...|.|++|+|||+.|++|+.||.|++||..++++
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~- 191 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ- 191 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
....+++|...|.+++|.+-. ..|.. ..|++++.||.
T Consensus 192 ---------------~g~~l~gH~K~It~Lawep~h----l~p~~------------------------r~las~skDg~ 228 (480)
T KOG0271|consen 192 ---------------IGRALRGHKKWITALAWEPLH----LVPPC------------------------RRLASSSKDGS 228 (480)
T ss_pred ---------------ccccccCcccceeEEeecccc----cCCCc------------------------cceecccCCCC
Confidence 256889999999999997211 11333 38999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
+++||+... .......+
T Consensus 229 vrIWd~~~~---------------------------------------------------------------~~~~~lsg 245 (480)
T KOG0271|consen 229 VRIWDTKLG---------------------------------------------------------------TCVRTLSG 245 (480)
T ss_pred EEEEEccCc---------------------------------------------------------------eEEEEecc
Confidence 999998741 22334456
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc-----------cCCC----
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-----------YDSS---- 337 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-----------~d~~---- 337 (601)
|...|+|+.|--+| ++++ +.|++|++|+... +... ..+.+|...|+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d---G~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD---GKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccc---hhHH-----HhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 77899999997665 4555 7999999999875 5554 6788999999988876 2233
Q ss_pred ---------------------eEEEEecCCcEEEEEcC-CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 338 ---------------------QLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 338 ---------------------~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
.|++|+.|.++.+|+-. +.+++..+.+ |..-|+.+.||||++|+|++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-----------Hq~lVn~V~fSPd~r~IASa 385 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-----------HQALVNHVSFSPDGRYIASA 385 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-----------hhhheeeEEECCCccEEEEe
Confidence 59999999999999963 4457777777 99999999999999999999
Q ss_pred ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCC
Q 007489 396 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPG 475 (601)
Q Consensus 396 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (601)
+.|..|++|+-.+|+....+.. |-..|..++|+. |.++|++++.|.+++||++.+.++ ...+.+|.+
T Consensus 386 SFDkSVkLW~g~tGk~lasfRG-Hv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl-----------~~DLpGh~D 452 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGKFLASFRG-HVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKL-----------KQDLPGHAD 452 (480)
T ss_pred ecccceeeeeCCCcchhhhhhh-ccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeee-----------cccCCCCCc
Confidence 9999999999999998877764 447999999999 999999999999999999999885 457889999
Q ss_pred cEEEEEeCCC
Q 007489 476 EVIGLSFSPS 485 (601)
Q Consensus 476 ~v~~i~~~p~ 485 (601)
.|.++.|+||
T Consensus 453 EVf~vDwspD 462 (480)
T KOG0271|consen 453 EVFAVDWSPD 462 (480)
T ss_pred eEEEEEecCC
Confidence 9999999999
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-44 Score=338.38 Aligned_cols=425 Identities=18% Similarity=0.180 Sum_probs=303.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC---eEEEEcCCCcEEEeeCCccc-hhhhccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGT-LLQAHSF 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~l~s~~~dg~i~vwd~~~~~-~~~~~~~ 76 (601)
+|++|+.||.|+|||+..+.+++.|+ ||.+.|+++.|.|+- .|++|+.|+.+++||+.+.. ++..+..
T Consensus 119 LlAtggaD~~v~VWdi~~~~~th~fk--------G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~ 190 (775)
T KOG0319|consen 119 LLATGGADGRVKVWDIKNGYCTHSFK--------GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL 190 (775)
T ss_pred eEEeccccceEEEEEeeCCEEEEEec--------CCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHh
Confidence 48999999999999999999999999 999999999999987 58999999999999998654 5889999
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCC---------cccc--ceeEEecCccccccceeEEEe
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS---------SEVI--KKWIYVGSVRAHTHDVRALTV 145 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~h~~~v~~l~~ 145 (601)
|.+.|++++|++|+..++++|+|..+.+||+...+....-.+.. +... ..|.. ......+...--
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~----TaG~~g~~~~~d 266 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII----TAGGSGVVQYWD 266 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE----EecCCceEEEEe
Confidence 99999999999999999999999999999996544311100000 0000 00110 001111111110
Q ss_pred eccccCC----CCCCcc-cccccCCCC---cccc-------ccc--------------c------ccccCCCCEEEEecC
Q 007489 146 AVPISRE----DPLPED-KVKRSRGRE---KPID-------FSY--------------H------KWAHLGVPMLISAGD 190 (601)
Q Consensus 146 ~~~~~~~----~~~~d~-~~~~~~~~~---~~~~-------~~~--------------~------~~~~~~~~~l~s~~~ 190 (601)
. .+.. ...|++ ++....... .-+. |-| . ++..+..++|+.++.
T Consensus 267 ~--es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 267 S--ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred c--ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 0 0000 000100 000000000 0000 000 0 011222245555555
Q ss_pred CCeEEEEeccccC--CcCCCccCCCCCccceeeeeccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 191 DTKLFAYCANEFT--KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 191 d~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
.+.+++|+..+.. .+.+|. ..+.++....+|.++++++ ..+.+|+++...... .
T Consensus 345 s~~lr~y~~~~~~c~ii~GH~----------e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~------------~ 402 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQIIPGHT----------EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS------------L 402 (775)
T ss_pred CCceEEEecCCCceEEEeCch----------hheeeeeecccCcEEEEecCCceEEEEEecCCcchh------------h
Confidence 5555555544322 122222 4555555555667777765 788999884433221 3
Q ss_pred EEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCCcceEEE-eeecCCcCccceeEEEEccCCCeEEEEe
Q 007489 267 LVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVGQGEWII-NKRQLPRKLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~s~d~~~l~~~~ 343 (601)
.......|...|.+++++..+ .++++ +.|.++++|++...++......+ .......|...|++++++|+.+++|+|+
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 334455678889999998766 56776 89999999999863222221111 1123456888999999999999999999
Q ss_pred cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCce
Q 007489 344 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASV 423 (601)
Q Consensus 344 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 423 (601)
.|.+.+||+++......++.+ |...|.++.|+|..+.||++|.|++|+||.+++..+..++.. |...|
T Consensus 483 qDktaKiW~le~~~l~~vLsG-----------H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~aV 550 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSG-----------HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAV 550 (775)
T ss_pred cccceeeecccCceEEEEeeC-----------CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-cccee
Confidence 999999999999999999999 999999999999999999999999999999999999988875 55789
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 424 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
..+.|-. ++..|++++.||.|++|+++++++ ..++..|.+.|.+++.+|.
T Consensus 551 lra~F~~-~~~qliS~~adGliKlWnikt~eC-----------~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 551 LRASFIR-NGKQLISAGADGLIKLWNIKTNEC-----------EMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred Eeeeeee-CCcEEEeccCCCcEEEEeccchhh-----------hhhhhhccceeEEEeecCc
Confidence 9999999 999999999999999999999984 6689999999999999998
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-42 Score=312.98 Aligned_cols=402 Identities=16% Similarity=0.195 Sum_probs=299.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc---c
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS---F 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~---~ 76 (601)
+++||++|++|.+|+-..-+.-.++. .|..-|.|+.|+||| ++++++.||.|.+||-.+|+.+..+. +
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence 48999999999999855545555555 799999999999999 99999999999999999999998888 8
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCC----CccccceeE----------------------Ee
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS----SSEVIKKWI----------------------YV 130 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~~~~----------------------~~ 130 (601)
|.+.|.+++|+||++.++|++.|.+++|||+.+..+...-... .......|. ..
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence 9999999999999999999999999999999987652211110 111111121 23
Q ss_pred cCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCcc
Q 007489 131 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 210 (601)
Q Consensus 131 ~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~ 210 (601)
..+.+|...|++++.+ ||++ +|++|+.||.|.-|+.........
T Consensus 314 ~~i~GHnK~ITaLtv~---------~d~~------------------------~i~SgsyDG~I~~W~~~~g~~~~~--- 357 (603)
T KOG0318|consen 314 KVISGHNKSITALTVS---------PDGK------------------------TIYSGSYDGHINSWDSGSGTSDRL--- 357 (603)
T ss_pred heecccccceeEEEEc---------CCCC------------------------EEEeeccCceEEEEecCCcccccc---
Confidence 4556777888888877 7776 999999999999999987543321
Q ss_pred CCCCCccceeeeeccccCC-CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 007489 211 CPAPQRVPIHLVHNTIFSH-TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 289 (601)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 289 (601)
....+...+..++.+. +..+.+..+..+++..+....... -..++.+ ....+++..+++.+
T Consensus 358 ---~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~-------------~~~~~lg--~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 358 ---AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK-------------SEVVKLG--SQPKGLAVLSDGGT 419 (603)
T ss_pred ---ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc-------------cceeecC--CCceeEEEcCCCCE
Confidence 1122336777777777 445556677888888775433211 0112222 33458888899877
Q ss_pred EEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccc
Q 007489 290 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH 369 (601)
Q Consensus 290 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 369 (601)
++...+..|.+..-.. .+. ...+ .-...+++++|+++.+++|+.|+.|+||.+..+++......
T Consensus 420 avv~~~~~iv~l~~~~-----~~~---~~~~---~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~----- 483 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQT-----KVS---SIPI---GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL----- 483 (603)
T ss_pred EEEEecCcEEEEecCC-----cce---eecc---ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-----
Confidence 7776666666654221 111 1111 11447899999999999999999999999986554322111
Q ss_pred cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 370 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
..|.++|+++++|||+.|||+++..+.|.+||+.+.+....--.+|.+.|.+|+|+| ++.++|+|+.|.+|.||+
T Consensus 484 ----~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 484 ----LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ----ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEE
Confidence 119999999999999999999999999999999998876555567889999999999 999999999999999999
Q ss_pred cCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC------CCCCEEEEEc
Q 007489 450 VEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS------PSSSSVIIYS 495 (601)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~------~~~~~~~~~~ 495 (601)
++...- .......|...|..+.|-.+ |.+..+.+|+
T Consensus 559 v~kP~~----------~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 559 VKKPAK----------HIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccChhh----------heEeccccccCceeEEEecCceEEeccCcceeEEec
Confidence 987531 12234468888999999766 4455566654
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-44 Score=315.95 Aligned_cols=281 Identities=18% Similarity=0.213 Sum_probs=257.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCC--CCEEEEEeeCCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
+-+.+|..+.|++|+ .||||+.+|.++||+..+...+++|.+|.+.|.++.|+|. +..++||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 567899999999999 9999999999999999999999999999999999999996 6789999999999999999977
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
. +..+.+|...|..++|+ |+|+ +|.+++.|
T Consensus 253 ~-----------------l~~l~gH~~RVs~VafH---------PsG~------------------------~L~TasfD 282 (459)
T KOG0272|consen 253 P-----------------LQDLEGHLARVSRVAFH---------PSGK------------------------FLGTASFD 282 (459)
T ss_pred c-----------------hhhhhcchhhheeeeec---------CCCc------------------------eeeecccc
Confidence 5 88999999999999999 9998 99999999
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
.+-++||+++...+. ..
T Consensus 283 ~tWRlWD~~tk~ElL---------------------------------------------------------------~Q 299 (459)
T KOG0272|consen 283 STWRLWDLETKSELL---------------------------------------------------------------LQ 299 (459)
T ss_pred cchhhcccccchhhH---------------------------------------------------------------hh
Confidence 999999998743221 12
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
.+|...|.+++|.+||.++++ |-|..-+|||+++ +.++ ..+.+|..+|.+++|+|+|..||+|+.|++++|
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt---gr~i-----m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT---GRCI-----MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeeccc---CcEE-----EEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 256688999999999999999 6888999999998 6665 567889999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
||++..+.+.++.+ |.+-|+.++|+| .|.+|++++.|++++||...+..+...+.. |.+.|.+++.+
T Consensus 372 WDLR~r~~ly~ipA-----------H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He~kV~s~Dis 439 (459)
T KOG0272|consen 372 WDLRMRSELYTIPA-----------HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HEGKVISLDIS 439 (459)
T ss_pred eeecccccceeccc-----------ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-CccceEEEEec
Confidence 99998888888888 999999999999 789999999999999999999999888886 45699999999
Q ss_pred CCCCCEEEEEeCCCeEEEEE
Q 007489 430 PQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd 449 (601)
+ +++++++++.|+++++|.
T Consensus 440 ~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 P-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred c-CCceEEEeccCceeeecc
Confidence 9 999999999999999995
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-43 Score=311.35 Aligned_cols=265 Identities=17% Similarity=0.213 Sum_probs=243.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC--C-eEEEEcCCCcEEEeeCCccchhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC--G-TLVSADSTGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h 77 (601)
.|||||-+|.++||+..++..+++|. +|...|.++.|+|. + .|||++.||++++|++.+.++++.+.+|
T Consensus 189 ~laT~swsG~~kvW~~~~~~~~~~l~--------gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH 260 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQCNLLQTLR--------GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH 260 (459)
T ss_pred eEEEeecCCceeEeecCCcceeEEEe--------ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc
Confidence 48999999999999999999999999 99999999999997 4 8999999999999999988999999999
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
...|..++|+|+|++|+|++.|.+-++||+.++.. +....+|...|.+++|. ||
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----------------lL~QEGHs~~v~~iaf~---------~D 314 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----------------LLLQEGHSKGVFSIAFQ---------PD 314 (459)
T ss_pred hhhheeeeecCCCceeeecccccchhhcccccchh-----------------hHhhcccccccceeEec---------CC
Confidence 99999999999999999999999999999999886 67778999999999999 88
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
|. ++++||.|..-++||+++..
T Consensus 315 GS------------------------L~~tGGlD~~~RvWDlRtgr---------------------------------- 336 (459)
T KOG0272|consen 315 GS------------------------LAATGGLDSLGRVWDLRTGR---------------------------------- 336 (459)
T ss_pred Cc------------------------eeeccCccchhheeecccCc----------------------------------
Confidence 87 99999999999999999732
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
.+..+ .+|...|.+++|+|+|..||+ +.|++++|||++. ...+
T Consensus 337 ----------------------------~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~---r~~l---- 380 (459)
T KOG0272|consen 337 ----------------------------CIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM---RSEL---- 380 (459)
T ss_pred ----------------------------EEEEe-cccccceeeEeECCCceEEeecCCCCcEEEeeecc---cccc----
Confidence 12222 236788999999999999999 7999999999996 3333
Q ss_pred eecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 317 KRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
..+++|.+-|+.+.|+| .|.+|++++.|++++||...++.+++++.+ |.+.|.++..+||+++++++
T Consensus 381 -y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-----------He~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 381 -YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-----------HEGKVISLDISPDSQAIATS 448 (459)
T ss_pred -eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-----------CccceEEEEeccCCceEEEe
Confidence 66889999999999999 788999999999999999999999999999 99999999999999999999
Q ss_pred ecCCeEEEEE
Q 007489 396 NCFGDVYIFN 405 (601)
Q Consensus 396 ~~dg~i~iwd 405 (601)
+.|.++++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999995
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-41 Score=303.60 Aligned_cols=351 Identities=15% Similarity=0.226 Sum_probs=279.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc----------
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT---------- 69 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~---------- 69 (601)
++||.+.||+|.+||-.+|+.+..+... .+|.+.|++|+|+||+ ++++++.|.+++|||+.+.+
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~-----~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDS-----DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCC-----CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 4799999999999999999999999732 2799999999999999 99999999999999997754
Q ss_pred ---------------------------------hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC
Q 007489 70 ---------------------------------LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 116 (601)
Q Consensus 70 ---------------------------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 116 (601)
.+..+.+|...|+++..++|+++|++|+.||.|.-|+...+..
T Consensus 279 v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~---- 354 (603)
T KOG0318|consen 279 VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS---- 354 (603)
T ss_pred hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc----
Confidence 2334578999999999999999999999999999999998874
Q ss_pred CCCCccccceeEEecCc--cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeE
Q 007489 117 GLSSSEVIKKWIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 194 (601)
Q Consensus 117 ~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v 194 (601)
..+ ..|+..|..++.+ ..+ .+++.|.|.+|
T Consensus 355 --------------~~~~g~~h~nqI~~~~~~---------~~~-------------------------~~~t~g~Dd~l 386 (603)
T KOG0318|consen 355 --------------DRLAGKGHTNQIKGMAAS---------ESG-------------------------ELFTIGWDDTL 386 (603)
T ss_pred --------------cccccccccceEEEEeec---------CCC-------------------------cEEEEecCCeE
Confidence 223 6799999999975 222 79999999999
Q ss_pred EEEeccccCCcCCCccCCCCCccceeeeeccccCCCe-EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 195 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS-LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
++.++.....-.. .......++ ..++..+++ ..+++....+.+.+-.. .+..+.
T Consensus 387 ~~~~~~~~~~t~~-~~~~lg~QP-----~~lav~~d~~~avv~~~~~iv~l~~~~-----------------~~~~~~-- 441 (603)
T KOG0318|consen 387 RVISLKDNGYTKS-EVVKLGSQP-----KGLAVLSDGGTAVVACISDIVLLQDQT-----------------KVSSIP-- 441 (603)
T ss_pred EEEecccCccccc-ceeecCCCc-----eeEEEcCCCCEEEEEecCcEEEEecCC-----------------cceeec--
Confidence 9998865321111 111111111 144455554 56666666666655221 122222
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
-.....+++++|+++.+++ +.|+.+++|.+... . + .+...+..|..+|++++||||+.+||++...+.+.+||
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~---~-l--~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD---E-L--KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCC---c-c--cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 2366889999999999999 79999999999851 1 1 22245667888999999999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 432 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 432 (601)
+.+.+........ |...|.+++|||+++++|+|+.|-.|.||+++.......+...|...|+.+.|- +
T Consensus 516 ~~s~~~~~~~w~F----------HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl--d 583 (603)
T KOG0318|consen 516 VASREVKTNRWAF----------HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL--D 583 (603)
T ss_pred cccCceecceeee----------eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe--c
Confidence 9888763333222 899999999999999999999999999999988766667777887779999998 5
Q ss_pred CCEEEEEeCCCeEEEEEcC
Q 007489 433 NNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vwd~~ 451 (601)
...|++++.|..|++|++.
T Consensus 584 e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 584 ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CceEEeccCcceeEEeccc
Confidence 7789999999999999974
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=279.39 Aligned_cols=292 Identities=15% Similarity=0.174 Sum_probs=244.1
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc--hhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~--~~~~~~~h 77 (601)
+||++|.|.+||+|...+|.|..+++ ..+..|+.+...||+ .||+++. -.|++||+.++. ++.++.+|
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq--------h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ--------HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe--------cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEecc
Confidence 48999999999999999999999998 567889999999999 5666554 579999998875 57889999
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
+..|+++.|..+|+.++|||.||+++|||++...+ .....|..+|+++..+ |+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~------------------qR~~~~~spVn~vvlh---------pn 135 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC------------------QRNYQHNSPVNTVVLH---------PN 135 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCccc------------------chhccCCCCcceEEec---------CC
Confidence 99999999999999999999999999999999653 4455677999999998 66
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
.. .|++|..+|.|++||+.+.....
T Consensus 136 Qt------------------------eLis~dqsg~irvWDl~~~~c~~------------------------------- 160 (311)
T KOG0315|consen 136 QT------------------------ELISGDQSGNIRVWDLGENSCTH------------------------------- 160 (311)
T ss_pred cc------------------------eEEeecCCCcEEEEEccCCcccc-------------------------------
Confidence 54 99999999999999998632100
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
++.......|.++++.|||.+++. ...|..++|++-.......+ ..
T Consensus 161 -------------------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l--~P 207 (311)
T KOG0315|consen 161 -------------------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL--EP 207 (311)
T ss_pred -------------------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc--eE
Confidence 111112366889999999999988 58899999999873333333 23
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
..+++.|..-+..+.+|||+++||+++.|.+++||+.++. +....+.+ |+..+..++||.||+||++|
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-----------h~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-----------HQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-----------CCceEEeeeeccCccEEEec
Confidence 3567889999999999999999999999999999999877 55566777 99999999999999999999
Q ss_pred ecCCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 396 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 396 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
+.|+.+++|++..++.......++. ...+++.
T Consensus 277 ssd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQYQGHHK-AAVCVAL 308 (311)
T ss_pred CCCCceeecccccCceeeecCCccc-ccEEEEe
Confidence 9999999999999998777776554 4555554
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-40 Score=276.08 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=242.0
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCC-----ccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEe
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR-----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 107 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~-----~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~ 107 (601)
+|.+.|..++..+.+ .|++++.|..+.+|++. .|..++.++||+..|..+..++||++.++++.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 999999999999887 88999999999999874 46778999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
.+++. ...+.+|+.+|.+++|+ +|.+ ++++
T Consensus 93 ~~g~~-----------------t~~f~GH~~dVlsva~s---------~dn~------------------------qivS 122 (315)
T KOG0279|consen 93 ATGES-----------------TRRFVGHTKDVLSVAFS---------TDNR------------------------QIVS 122 (315)
T ss_pred cCCcE-----------------EEEEEecCCceEEEEec---------CCCc------------------------eeec
Confidence 99875 77899999999999998 8887 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
|+.|.+|.+|+......+
T Consensus 123 GSrDkTiklwnt~g~ck~-------------------------------------------------------------- 140 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVCKY-------------------------------------------------------------- 140 (315)
T ss_pred CCCcceeeeeeecccEEE--------------------------------------------------------------
Confidence 999999999998752211
Q ss_pred EEEEec-CCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe
Q 007489 268 VQVKSK-ASRKIICSTISNS--GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 268 ~~~~~~-~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~ 343 (601)
++... +...|.|+.|+|+ ..+|+. +.|+++++||++. .+. ...+.+|...++.+++||||.++++|+
T Consensus 141 -t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~---~~l-----~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 141 -TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN---CQL-----RTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred -EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC---cch-----hhccccccccEEEEEECCCCCEEecCC
Confidence 11111 1478999999998 456666 7999999999985 222 256788999999999999999999999
Q ss_pred cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC----
Q 007489 344 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE---- 419 (601)
Q Consensus 344 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~---- 419 (601)
.||.+.+||++.++.+..+. |...|.+++|+|+.-+|+.+...+ |+|||++++..+..+..-.
T Consensus 212 kdg~~~LwdL~~~k~lysl~------------a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE------------AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred CCceEEEEEccCCceeEecc------------CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccc
Confidence 99999999999999988887 788999999999988888776554 9999999987765543211
Q ss_pred ----CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 420 ----GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 420 ----~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.....+++|++ +|..|+++..|+.|++|.+..
T Consensus 279 ~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEeec
Confidence 12356789999 999999999999999998753
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-40 Score=309.56 Aligned_cols=424 Identities=13% Similarity=0.165 Sum_probs=312.0
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||.|..||.|+||+..++..+.++. +|...|+++.|...| +|+||+.|+.|.+||+-...-+.++++|..
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfn--------gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd 150 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFN--------GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKD 150 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeec--------ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchH
Confidence 47999999999999999998888888 999999999999999 999999999999999986677889999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC--------
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR-------- 151 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-------- 151 (601)
.|+.+-|..+.+++++.+.|+.|++||+.+..+ ..+.-.|...++++++....--
T Consensus 151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-----------------f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~ 213 (888)
T KOG0306|consen 151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-----------------FETHVDHRGEIWALVLDEKLLVTAGTDSEL 213 (888)
T ss_pred HHhHHhccCCCeEEEEeccCceEEEEeccccee-----------------eeEEecccceEEEEEEecceEEEEecCCce
Confidence 999999998899999999999999999999886 5566667777777776520000
Q ss_pred --------CCCCCccccccc--------CCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC------------
Q 007489 152 --------EDPLPEDKVKRS--------RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT------------ 203 (601)
Q Consensus 152 --------~~~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~------------ 203 (601)
.+..++...... ++....+.+. ...+..++++-+.|..+.++.+....
T Consensus 214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~----~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~ 289 (888)
T KOG0306|consen 214 KVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV----TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKR 289 (888)
T ss_pred EEEEeecccccccccccceeeccceeeeccCCceeEEe----ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHH
Confidence 000000000000 0111111111 01112355555555555544443200
Q ss_pred ------------------------------------------------------------------Cc--CCCccCCCCC
Q 007489 204 ------------------------------------------------------------------KF--SPHEICPAPQ 215 (601)
Q Consensus 204 ------------------------------------------------------------------~~--~~~~~~~~~~ 215 (601)
.. ..........
T Consensus 290 ~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~ 369 (888)
T KOG0306|consen 290 AKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI 369 (888)
T ss_pred hhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee
Confidence 00 0000000111
Q ss_pred ccceeeeeccccCCCeEEEEEeC-CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-
Q 007489 216 RVPIHLVHNTIFSHTSLLLVQYS-CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS- 293 (601)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 293 (601)
..+..-|++++++.+..+++++. +.+.+|+..+.. .+.++. ...+.+..|-|.+++++.|
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k---------------ciRTi~---~~y~l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK---------------CIRTIT---CGYILASKFVPGDRYIVLGT 431 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcc---------------eeEEec---cccEEEEEecCCCceEEEec
Confidence 12234577888888888888875 899999988554 333443 3478999999999999995
Q ss_pred cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC-----CceeeeeccCccc
Q 007489 294 DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-----SELLHTFTPCREE 368 (601)
Q Consensus 294 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~ 368 (601)
..|.+.+||+.. ...+ .....|.+.|.+++.+||++.+++|+.|.+|++||..- +...+.+.-..
T Consensus 432 k~Gel~vfdlaS---~~l~-----Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~-- 501 (888)
T KOG0306|consen 432 KNGELQVFDLAS---ASLV-----ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH-- 501 (888)
T ss_pred cCCceEEEEeeh---hhhh-----hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc--
Confidence 889999999986 3222 45568999999999999999999999999999999631 11111111100
Q ss_pred ccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 369 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 369 ~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
...-.....|.|+.+||||++||++-.|.+|+||-+++.+....+.. |.-||.+|..+| |+++++||+.|.+|+||
T Consensus 502 --~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~-DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 502 --TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISP-DSKLIVTGSADKNVKIW 577 (888)
T ss_pred --ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEEeccC-CcCeEEeccCCCceEEe
Confidence 00001467899999999999999999999999999999998777765 567999999999 99999999999999999
Q ss_pred EcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC-------CCCCEEEEEcC
Q 007489 449 DVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS-------PSSSSVIIYSA 496 (601)
Q Consensus 449 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-------~~~~~~~~~~~ 496 (601)
-++-|.+ .+.+-+|.+.|.++.|-|. |++..+.-|+.
T Consensus 578 GLdFGDC-----------HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 578 GLDFGDC-----------HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ccccchh-----------hhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence 9998884 6678899999999999998 56667766643
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-41 Score=314.44 Aligned_cols=418 Identities=17% Similarity=0.204 Sum_probs=312.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
.|++++..+.+++|++.+|+.++.++. -|+++|.-++|+|.| .+++|+.||.++|||+..+.+...|++|.+
T Consensus 76 ~L~~a~rs~llrv~~L~tgk~irswKa-------~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG 148 (775)
T KOG0319|consen 76 VLVTASRSQLLRVWSLPTGKLIRSWKA-------IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG 148 (775)
T ss_pred EEEEeeccceEEEEEcccchHhHhHhh-------ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc
Confidence 378899999999999999999999984 499999999999999 899999999999999999999999999999
Q ss_pred ceEEEEEeCCCC--EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 80 DVNALAAAPSHN--RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 80 ~V~~l~~s~~~~--~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
.|.++.|+|+-+ .|++|+.|+++++||+..... ++..+..|...|++++|. +|
T Consensus 149 vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----------------cl~~~~~H~S~vtsL~~~---------~d 203 (775)
T KOG0319|consen 149 VVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----------------CLHTMILHKSAVTSLAFS---------ED 203 (775)
T ss_pred eEEEEEeCCccchhheeecCCCceEEEEEcccCch----------------HHHHHHhhhhheeeeeec---------cC
Confidence 999999999765 588999999999999996542 367889999999999998 78
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC--------
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH-------- 229 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 229 (601)
+. .++++|.|..+.+||+.+.+.....+... .+-++.+-+
T Consensus 204 ~~------------------------~~ls~~RDkvi~vwd~~~~~~l~~lp~ye--------~~E~vv~l~~~~~~~~~ 251 (775)
T KOG0319|consen 204 SL------------------------ELLSVGRDKVIIVWDLVQYKKLKTLPLYE--------SLESVVRLREELGGKGE 251 (775)
T ss_pred Cc------------------------eEEEeccCcEEEEeehhhhhhhheechhh--------heeeEEEechhcCCcce
Confidence 76 99999999999999996644322111100 000111111
Q ss_pred ------------------------------------------CeEEEEEeCCeeEEeeccccCCcccCCC---------C
Q 007489 230 ------------------------------------------TSLLLVQYSCRLDILSVRLENNVESRSS---------S 258 (601)
Q Consensus 230 ------------------------------------------~~~~l~~~~~~i~i~~~~~~~~~~~~~~---------~ 258 (601)
.+.++++++..+.+++.+.......... +
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~ 331 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKF 331 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeee
Confidence 1223333444444443332211110000 0
Q ss_pred CCC-----------------CCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecC
Q 007489 259 GGH-----------------ASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQL 320 (601)
Q Consensus 259 ~~~-----------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~ 320 (601)
-|. .-+..-.++..+|...|.++....+|.+|++ +.|.++++|.++. +.... ......
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~--~~~~~--~~~a~~ 407 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN--NCSKS--LCVAQA 407 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC--Ccchh--hhhhhh
Confidence 010 0011223456677888999987778888998 7999999999953 11111 222556
Q ss_pred CcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCcee---eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 321 PRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELL---HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 321 ~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
.+|.+.|.+++++..+ .+|++++.|+++++|++...+.. ..|.. ......|...|++++++|+.+++|+|+
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~-----~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC-----RYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh-----hHHHHhhcccccceEecCCCceEEecc
Confidence 7899999999997755 67999999999999999652211 11100 001112899999999999999999999
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCc
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE 476 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
.|.+.+||+++......++.. |...|+++.|+| ..+.|++++.|.+|+||.+++..+ .+++.||...
T Consensus 483 qDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSC-----------lkT~eGH~~a 549 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSC-----------LKTFEGHTSA 549 (775)
T ss_pred cccceeeecccCceEEEEeeC-CccceEEEEecc-ccceeEeccCCceEEEEEecccee-----------eeeecCccce
Confidence 999999999998888878775 667999999999 999999999999999999999874 7789999999
Q ss_pred EEEEEeCCC-------CCCCEEEEEcC-ceEEEEeC
Q 007489 477 VIGLSFSPS-------PSSSSVIIYSA-RAMCVIDF 504 (601)
Q Consensus 477 v~~i~~~p~-------~~~~~~~~~~~-~~~~~~~~ 504 (601)
|..+.|-.+ +.++.+.+|+- +..|...+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 999999877 34666777753 33444444
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-38 Score=294.82 Aligned_cols=466 Identities=15% Similarity=0.175 Sum_probs=332.5
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCcc--------chhhh
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG--------TLLQA 73 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~--------~~~~~ 73 (601)
|++..+.|...+-++.....++++. ....|.|+.|||||.+++.+..+.+.||..... .+.++
T Consensus 70 llavdE~g~~~lvs~~~r~Vlh~f~---------fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~ 140 (893)
T KOG0291|consen 70 LLAVDERGRALLVSLLSRSVLHRFN---------FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRT 140 (893)
T ss_pred EEEEcCCCcEEEEecccceeeEEEe---------ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeee
Confidence 4455556666666666666677775 578899999999996666667789999987532 12356
Q ss_pred ccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 74 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
+.+|-..|.++.|+.|.++|++|+.|..+++|.++..+. .....+.+|...|.+.-|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---------------~~~~~l~gHkd~VvacfF~------- 198 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---------------LFTYALNGHKDYVVACFFG------- 198 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---------------cceEeccCCCcceEEEEec-------
Confidence 678999999999999999999999999999999987542 1145778999999998886
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCC--cC--------------------CCccC
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK--FS--------------------PHEIC 211 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~--~~--------------------~~~~~ 211 (601)
.|.. .+++.+.||.+.+|....... .. .+...
T Consensus 199 --~~~~------------------------~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~ 252 (893)
T KOG0291|consen 199 --ANSL------------------------DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF 252 (893)
T ss_pred --cCcc------------------------eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence 5554 899999999999997762100 00 00000
Q ss_pred -----CCCCccceeeeeccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 007489 212 -----PAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS 284 (601)
Q Consensus 212 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 284 (601)
..-.......+.+.+|++...+|+++- |...++.+.... ++..+... +.+|..++|+
T Consensus 253 ~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~---------------lih~LSis-~~~I~t~~~N 316 (893)
T KOG0291|consen 253 WYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN---------------LIHSLSIS-DQKILTVSFN 316 (893)
T ss_pred EEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce---------------EEEEeecc-cceeeEEEec
Confidence 000000114567778888887777754 677788776443 44444443 5789999999
Q ss_pred CCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeee
Q 007489 285 NSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 362 (601)
Q Consensus 285 ~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~ 362 (601)
..|.+||.+ .-|.+-+|+... ...+ .+..+|...+++++++|||+++|+|+.||.|+|||..++-+..+|
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqs---EsYV-----lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQS---ESYV-----LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeec---ccee-----eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 999999995 446999999986 3333 445788999999999999999999999999999999999999999
Q ss_pred ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-----------------------------------
Q 007489 363 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE----------------------------------- 407 (601)
Q Consensus 363 ~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~----------------------------------- 407 (601)
.. |++.|+.+.|+..|+.|++++.||+|+.||+.
T Consensus 389 te-----------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 389 TE-----------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred cc-----------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 98 99999999999999999999999999999984
Q ss_pred ---------CceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEE
Q 007489 408 ---------IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVI 478 (601)
Q Consensus 408 ---------~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 478 (601)
+|+..-.+.. |.++|.+++|+| ++..|++++.|.+|++||+-...-+ .+++ .+...+.
T Consensus 458 F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~----------vEtl-~i~sdvl 524 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSG-HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGT----------VETL-EIRSDVL 524 (893)
T ss_pred EEEEEEEeecCeeeehhcC-CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCce----------eeeE-eecccee
Confidence 3333333443 457999999999 9999999999999999999655210 1122 3567899
Q ss_pred EEEeCCCCCCCEEEEEcCc-eEEEEeCCCCCCCCccCccccCCchhhhhhccCCccccccccccccccccccccCCcceE
Q 007489 479 GLSFSPSPSSSSVIIYSAR-AMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFE 557 (601)
Q Consensus 479 ~i~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 557 (601)
+++|+|+ +..+.+-..+ .+.++|.......-. +.. ..-..+.+++.. .-.+ .....++.|.
T Consensus 525 ~vsfrPd--G~elaVaTldgqItf~d~~~~~q~~~---Idg----------rkD~~~gR~~~D-~~ta--~~sa~~K~Ft 586 (893)
T KOG0291|consen 525 AVSFRPD--GKELAVATLDGQITFFDIKEAVQVGS---IDG----------RKDLSGGRKETD-RITA--ENSAKGKTFT 586 (893)
T ss_pred EEEEcCC--CCeEEEEEecceEEEEEhhhceeecc---ccc----------hhhccccccccc-eeeh--hhcccCCceE
Confidence 9999999 5666666544 678888754221100 000 000011111110 0011 1122345565
Q ss_pred EEe--eccceEEeeecCCCeEEEEecCHHHHHhcCC
Q 007489 558 FFA--FRDPVLFIGHLSKSSMLIIDKPWLEVVKTFD 591 (601)
Q Consensus 558 ~~~--~~~~~l~~~~~~~~~lv~~e~p~~~~~~~lp 591 (601)
-+. ..+.++.+|.. .+.|.++..|-..+++.|.
T Consensus 587 ti~ySaDG~~IlAgG~-sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 587 TICYSADGKCILAGGE-SNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred EEEEcCCCCEEEecCC-cccEEEEECchhheeeeEE
Confidence 332 24777777774 6779999999888777654
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=271.96 Aligned_cols=291 Identities=15% Similarity=0.140 Sum_probs=254.5
Q ss_pred CCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 32 LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 32 ~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
.++||.+.|.++.|++|. +|++++.||.+.|||..+...++.++-....|..++|+|.|+++++||.|+...||++.+.
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 345999999999999999 9999999999999999998888888888899999999999999999999999999999865
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
... ..-.....+.+|+..+.+..|. +|+ .|++++-
T Consensus 130 d~~-----------g~~~v~r~l~gHtgylScC~f~---------dD~-------------------------~ilT~SG 164 (343)
T KOG0286|consen 130 DAE-----------GNVRVSRELAGHTGYLSCCRFL---------DDN-------------------------HILTGSG 164 (343)
T ss_pred ccc-----------ccceeeeeecCccceeEEEEEc---------CCC-------------------------ceEecCC
Confidence 210 0011145789999999999996 443 8999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|.+..+||+++.+ ..+.
T Consensus 165 D~TCalWDie~g~---------------------------------------------------------------~~~~ 181 (343)
T KOG0286|consen 165 DMTCALWDIETGQ---------------------------------------------------------------QTQV 181 (343)
T ss_pred CceEEEEEcccce---------------------------------------------------------------EEEE
Confidence 9999999998733 2223
Q ss_pred EecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcE
Q 007489 271 KSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI 348 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i 348 (601)
..+|...|.+++++| +++.+++ +.|...+|||++. +... +.+.+|...|+++.|.|+|.-+++|+.|++.
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~---~~c~-----qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS---GQCV-----QTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccC---ccee-----EeecccccccceEEEccCCCeeeecCCCcee
Confidence 336678899999999 8999999 7999999999997 5554 7889999999999999999999999999999
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
++||++..+.+..+.... ....|++++||..|++|.+|..|.++.+||.-.++....+.. |...|+++..
T Consensus 254 RlyDlRaD~~~a~ys~~~---------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-HeNRvScl~~ 323 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDS---------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HENRVSCLGV 323 (343)
T ss_pred EEEeecCCcEEeeeccCc---------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cCCeeEEEEE
Confidence 999999988888887543 567899999999999999999999999999999888878875 5679999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEE
Q 007489 429 PPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 429 ~p~~~~~l~~~~~dg~v~vwd 449 (601)
+| ||.-|++|+.|.+++||.
T Consensus 324 s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CC-CCcEEEecchhHheeecC
Confidence 99 999999999999999994
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=265.74 Aligned_cols=289 Identities=17% Similarity=0.265 Sum_probs=241.4
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEE
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 129 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 129 (601)
.|++++.|.+|++|...+|.+..+++...+.|+.++..||++.|++++ ...|++||++++... +
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~---------------P 75 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPN---------------P 75 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCC---------------c
Confidence 799999999999999999999999998889999999999999999888 568999999987642 2
Q ss_pred ecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCc
Q 007489 130 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 209 (601)
Q Consensus 130 ~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~ 209 (601)
+..+.+|+..|.++.|. .+|+ .+++||+||++++||++....
T Consensus 76 v~t~e~h~kNVtaVgF~---------~dgr------------------------WMyTgseDgt~kIWdlR~~~~----- 117 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQ---------CDGR------------------------WMYTGSEDGTVKIWDLRSLSC----- 117 (311)
T ss_pred eeEEeccCCceEEEEEe---------ecCe------------------------EEEecCCCceEEEEeccCccc-----
Confidence 67889999999999998 7887 999999999999999986210
Q ss_pred cCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 007489 210 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 289 (601)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 289 (601)
+-...+...|+++.++|+...
T Consensus 118 -----------------------------------------------------------qR~~~~~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 118 -----------------------------------------------------------QRNYQHNSPVNTVVLHPNQTE 138 (311)
T ss_pred -----------------------------------------------------------chhccCCCCcceEEecCCcce
Confidence 111123478999999999877
Q ss_pred EEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc------eeeee
Q 007489 290 FAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE------LLHTF 362 (601)
Q Consensus 290 l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~------~~~~~ 362 (601)
|++ ..+|.|++||+.. ..+. ...++.....|.++...|||++|+.+...|..++|++-..+ ++..|
T Consensus 139 Lis~dqsg~irvWDl~~---~~c~----~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGE---NSCT----HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred EEeecCCCcEEEEEccC---Cccc----cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 777 4889999999986 2111 23345556789999999999999999999999999986544 34444
Q ss_pred ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-eEEEEeeccCCCceeEEEecCCCCCEEEEEeC
Q 007489 363 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-RQHWFISRLEGASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 363 ~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~ 441 (601)
+. |++.+..+.+|||++|||+++.|.+++||++++. +....+.. |...++.++||. |++||++++.
T Consensus 212 ~a-----------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~rWvWdc~FS~-dg~YlvTass 278 (311)
T KOG0315|consen 212 QA-----------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQRWVWDCAFSA-DGEYLVTASS 278 (311)
T ss_pred ec-----------ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-CCceEEeeeecc-CccEEEecCC
Confidence 44 9999999999999999999999999999999998 44444443 446999999999 9999999999
Q ss_pred CCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEe
Q 007489 442 SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSF 482 (601)
Q Consensus 442 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 482 (601)
|+.+++|++..++. .+.+.+|-.+..+++.
T Consensus 279 d~~~rlW~~~~~k~-----------v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 279 DHTARLWDLSAGKE-----------VRQYQGHHKAAVCVAL 308 (311)
T ss_pred CCceeecccccCce-----------eeecCCcccccEEEEe
Confidence 99999999999873 4467777766666654
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-39 Score=288.29 Aligned_cols=314 Identities=19% Similarity=0.238 Sum_probs=260.9
Q ss_pred CEEeeecCCcEEEEECCC--Cce----EEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhh
Q 007489 1 MLYSGSSDGYIRSWDAKL--GYE----IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA 73 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~--~~~----~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~ 73 (601)
+|++|+.|.+.|+|++.. ..+ +.+.....++....-...|++|+|+.+| .||+|+.||.++||+.. |.++.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence 478999999999999864 111 1111111122222334679999999999 99999999999999987 999999
Q ss_pred ccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 74 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
+..|.++|.++.|+.+|++|++++.|+++.+||..++.. ...+..|+..-..+.|.
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-----------------~q~f~~~s~~~lDVdW~------- 327 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-----------------KQQFEFHSAPALDVDWQ------- 327 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-----------------EEeeeeccCCccceEEe-------
Confidence 999999999999999999999999999999999988874 56667777775666764
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
.+ ..+++++.|+.|+++.+....
T Consensus 328 --~~-------------------------~~F~ts~td~~i~V~kv~~~~------------------------------ 350 (524)
T KOG0273|consen 328 --SN-------------------------DEFATSSTDGCIHVCKVGEDR------------------------------ 350 (524)
T ss_pred --cC-------------------------ceEeecCCCceEEEEEecCCC------------------------------
Confidence 22 289999999999998876411
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcce
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
.+.++. +|...|.++.|.|.|.+|++ ++|++++||.... ....
T Consensus 351 --------------------------------P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~---~~~~ 394 (524)
T KOG0273|consen 351 --------------------------------PVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ---SNSV 394 (524)
T ss_pred --------------------------------cceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCC---Ccch
Confidence 122222 47899999999999999999 7999999999865 3332
Q ss_pred EEEeeecCCcCccceeEEEEccCC---------CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEE
Q 007489 313 WIINKRQLPRKLQFAHSMIFSYDS---------SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~d~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
..+..|...|..+.|+|.| ..+++++.|++|++||+..+.++++|.. |+.+|.++
T Consensus 395 -----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-----------H~~pVysv 458 (524)
T KOG0273|consen 395 -----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-----------HQEPVYSV 458 (524)
T ss_pred -----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-----------CCCceEEE
Confidence 5678899999999999976 3689999999999999999999999987 99999999
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+|||+|+|||+|+.||.|+||++.+++....... +..|..++|+. +++.|.++..|+.+++-|+.
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999998766553 35799999999 99999999999999999874
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=287.57 Aligned_cols=427 Identities=15% Similarity=0.147 Sum_probs=316.0
Q ss_pred EEeeecCCcEEEEECCCCc--------eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccch--
Q 007489 2 LYSGSSDGYIRSWDAKLGY--------EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL-- 70 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~-- 70 (601)
+|.|+ ...+.||...... ..+++. +|-..|.++.|+.|. .|++|+.|..+++|++...+-
T Consensus 111 fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~--------g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~ 181 (893)
T KOG0291|consen 111 FAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYL--------GHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF 181 (893)
T ss_pred EEEEe-cceeEEEecCcchhcccCcceEeeeec--------CCccceeEEEeccCCceEEeccccceEEEEEeccccccc
Confidence 44444 4589999864221 223333 899999999999999 899999999999999976554
Q ss_pred hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC------C---C------CCccccceeEEecC--c
Q 007489 71 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND------G---L------SSSEVIKKWIYVGS--V 133 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~------~---~------~~~~~~~~~~~~~~--~ 133 (601)
...+.+|...|.+.-|..+...+++.+.||.+.+|.....-..... + . .+......|..... +
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 5677899999999999999999999999999999988732110000 0 0 00011123443322 2
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~ 213 (601)
......|++.+|+ +... .|++|-..|...+|.+..+..+....+..
T Consensus 262 n~~~~kvtaa~fH---------~~t~------------------------~lvvgFssG~f~LyelP~f~lih~LSis~- 307 (893)
T KOG0291|consen 262 NQNSSKVTAAAFH---------KGTN------------------------LLVVGFSSGEFGLYELPDFNLIHSLSISD- 307 (893)
T ss_pred cccccceeeeecc---------CCce------------------------EEEEEecCCeeEEEecCCceEEEEeeccc-
Confidence 2223678888886 4443 99999999999999998766544333211
Q ss_pred CCccceeeeeccccCCCeEEEEEeC---CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 290 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 290 (601)
..+..++++..|..++.+. |.+-||++.... .+ --+.+|...++++++||||+++
T Consensus 308 ------~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------YV-lKQQgH~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 308 ------QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------YV-LKQQGHSDRITSLAYSPDGQLI 365 (893)
T ss_pred ------ceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------ee-eeccccccceeeEEECCCCcEE
Confidence 4567788888888888776 689999998654 11 2234567889999999999999
Q ss_pred EE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccc
Q 007489 291 AY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH 369 (601)
Q Consensus 291 ~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 369 (601)
|+ +.|++|++|+... +-++ .++..|...|+.+.|+..|+.+++.+-||+|+.||+...+..++|..+.+.+
T Consensus 366 aTG~eDgKVKvWn~~S---gfC~-----vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQS---GFCF-----VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred EeccCCCcEEEEeccC---ceEE-----EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 99 6999999999986 6676 6788999999999999999999999999999999999888888887765432
Q ss_pred ---------------------------------cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-eEEEEe
Q 007489 370 ---------------------------------DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-RQHWFI 415 (601)
Q Consensus 370 ---------------------------------~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~ 415 (601)
...+.+|.++|.+++|+|++..||+++.|.+|++||+-.. ....++
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE
Confidence 1124689999999999999999999999999999998544 333445
Q ss_pred eccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCccc-c--------hhcccCCcCcccccCCCcEEEEEeCCCC
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE-W--------SMQHTFVLPRRYQEFPGEVIGLSFSPSP 486 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 486 (601)
+.. ..+.+++|+| +|+.|++++.||+|.+||++.+.... . .+.........-.......+.+++++|
T Consensus 518 ~i~--sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD- 593 (893)
T KOG0291|consen 518 EIR--SDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD- 593 (893)
T ss_pred eec--cceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC-
Confidence 533 4799999999 99999999999999999997653221 0 111122222222233467899999999
Q ss_pred CCCEEEEE-cCceEEEEeCCC
Q 007489 487 SSSSVIIY-SARAMCVIDFGR 506 (601)
Q Consensus 487 ~~~~~~~~-~~~~~~~~~~~~ 506 (601)
++.|+.. ..+.+|+++...
T Consensus 594 -G~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 594 -GKCILAGGESNSICIYDVPE 613 (893)
T ss_pred -CCEEEecCCcccEEEEECch
Confidence 4444444 356677777643
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-38 Score=261.52 Aligned_cols=275 Identities=20% Similarity=0.243 Sum_probs=226.1
Q ss_pred CEEeeecCCcEEEEECC-----CCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhc
Q 007489 1 MLYSGSSDGYIRSWDAK-----LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~ 74 (601)
.|++++.|.+|.+|++. .|..+++++ ||+..|..++.++|| +.++++.|+++++||+.+|+..+.|
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--------GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--------GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF 101 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeee--------ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE
Confidence 37899999999999974 477888898 999999999999999 8999999999999999999999999
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc--cccceeEEEeeccccCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDVRALTVAVPISRE 152 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~ 152 (601)
.+|...|++++|++|.+.+++|+.|++|++|+..+... .++.. |.+.|.++.|+
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck------------------~t~~~~~~~~WVscvrfs------ 157 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK------------------YTIHEDSHREWVSCVRFS------ 157 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCcceeeeeeecccEE------------------EEEecCCCcCcEEEEEEc------
Confidence 99999999999999999999999999999999988652 23322 37889999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+.. .++|++++.|++|++||+++++..
T Consensus 158 ---P~~~----------------------~p~Ivs~s~DktvKvWnl~~~~l~--------------------------- 185 (315)
T KOG0279|consen 158 ---PNES----------------------NPIIVSASWDKTVKVWNLRNCQLR--------------------------- 185 (315)
T ss_pred ---CCCC----------------------CcEEEEccCCceEEEEccCCcchh---------------------------
Confidence 6641 249999999999999999975422
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
....+|...++.+++||||.+.++ +.++.+.+||++. +..
T Consensus 186 ------------------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~---~k~ 226 (315)
T KOG0279|consen 186 ------------------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE---GKN 226 (315)
T ss_pred ------------------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccC---Cce
Confidence 222345688999999999999999 7999999999986 444
Q ss_pred eEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
+ ...++...|.+++|+|+.-.|+.+... .|+|||++++.++.++....... ..........+++||+||+.
T Consensus 227 l------ysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~--s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 227 L------YSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGP--SSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred e------EeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhcccccccc--ccccCCcEEEEEEEcCCCcE
Confidence 3 223456789999999998777766544 49999999998887776521100 11112344577999999999
Q ss_pred EEEEecCCeEEEEEcC
Q 007489 392 LAAVNCFGDVYIFNLE 407 (601)
Q Consensus 392 las~~~dg~i~iwd~~ 407 (601)
|++|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
No 19
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=291.30 Aligned_cols=432 Identities=17% Similarity=0.222 Sum_probs=309.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+||.|+.|.+||+-...-+.++. ||.+.|+..-|..+. .+++.+.|+.|++||+.+..+..+.-.|.+
T Consensus 121 rlaSGskDt~IIvwDlV~E~Gl~rL~--------GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~ 192 (888)
T KOG0306|consen 121 RLASGSKDTDIIVWDLVGEEGLFRLR--------GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRG 192 (888)
T ss_pred eEeecCCCccEEEEEeccceeeEEee--------cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccc
Confidence 48999999999999998778888888 999999999999855 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC----------CCC----------C-CCCCccccceeE----------
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESI----------GPN----------D-GLSSSEVIKKWI---------- 128 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~----------~~~----------~-~~~~~~~~~~~~---------- 128 (601)
.|+++++.+ +.+++++.|+.+++|++....- ... . .+.......-..
T Consensus 193 Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~ 270 (888)
T KOG0306|consen 193 EIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIEL 270 (888)
T ss_pred eEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhh
Confidence 999999986 8899999999999999921110 000 0 000000000000
Q ss_pred ------------------------------------------EecCccccccceeEEEeeccccCC--------------
Q 007489 129 ------------------------------------------YVGSVRAHTHDVRALTVAVPISRE-------------- 152 (601)
Q Consensus 129 ------------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~-------------- 152 (601)
.+..++ -...+.++.+.+.....
T Consensus 271 frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir-~~~kiks~dv~~~~~~~~~lv~l~nNtv~~y 349 (888)
T KOG0306|consen 271 FRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR-TSAKIKSFDVTPSGGTENTLVLLANNTVEWY 349 (888)
T ss_pred eeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee-chhheeEEEEEecCCcceeEEEeecCceEEE
Confidence 000000 00111122211111000
Q ss_pred ------CCCCccc-c--cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeee
Q 007489 153 ------DPLPEDK-V--KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH 223 (601)
Q Consensus 153 ------~~~~d~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (601)
...|... + ..+.+|+..+. .......+.++..+..+.+++|+..+.+....... ..+.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~dVR----sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---------~y~l 416 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRSDVR----SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---------GYIL 416 (888)
T ss_pred EeccCCCCCccccccceeeeccchhhee----EEEeecCceeeeecCCCcEEEEEccCcceeEEecc---------ccEE
Confidence 0000000 0 11122222221 01111123566666678999999987654443331 2455
Q ss_pred ccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEE
Q 007489 224 NTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSL 300 (601)
Q Consensus 224 ~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l 300 (601)
+..|-|..++++.+. |.+.++++.... +.+....|++.|.+++.+||++.+++ +.|.+|++
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~----------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf 480 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASAS----------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF 480 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhh----------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence 666777776666554 889999988654 23333478899999999999998888 79999999
Q ss_pred EEeecCCC--C--cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCC
Q 007489 301 FELKKGKV--G--QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 376 (601)
Q Consensus 301 ~~~~~~~~--~--~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 376 (601)
|+...... + .+.+.+.....-.....|.|+.+||||++||++--|.+|+||-+++.+..-++.+ |
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-----------H 549 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-----------H 549 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-----------c
Confidence 99875221 1 1222232222233355899999999999999999999999999999999889999 9
Q ss_pred CCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 007489 377 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 456 (601)
Q Consensus 377 ~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 456 (601)
.-+|.|+..|||++++++|+.|.+|+||-++-|.++..+-. |...|.++.|-| ...++.+++.|+.|+-||-+.-+.
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA-HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~- 626 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEE- 626 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc-ccCceeEEEEcc-cceeEEEecCcceEEeechhhhhh-
Confidence 99999999999999999999999999999999999888764 557999999999 889999999999999999877653
Q ss_pred cchhcccCCcCcccccCCCcEEEEEeCCCC-------CCCEEEEEcC
Q 007489 457 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSP-------SSSSVIIYSA 496 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-------~~~~~~~~~~ 496 (601)
.+.+.+|...|.+++.+|+| ++..|.+|..
T Consensus 627 ----------iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 627 ----------IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred ----------heeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 55788999999999999993 4566666643
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=255.63 Aligned_cols=276 Identities=16% Similarity=0.195 Sum_probs=241.0
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
+++++|.+.|.++.|++|.++|++++.||.+.|||.-+... ...+......|...+|+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----------------~haipl~s~WVMtCA~s----- 106 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----------------VHAIPLPSSWVMTCAYS----- 106 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----------------eeEEecCceeEEEEEEC-----
Confidence 67899999999999999999999999999999999887664 55666678899999998
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
|.|+ .+++||.|....+|++.+.... +
T Consensus 107 ----PSg~------------------------~VAcGGLdN~Csiy~ls~~d~~-------------------------g 133 (343)
T KOG0286|consen 107 ----PSGN------------------------FVACGGLDNKCSIYPLSTRDAE-------------------------G 133 (343)
T ss_pred ----CCCC------------------------eEEecCcCceeEEEeccccccc-------------------------c
Confidence 8887 9999999999999998752100 0
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcc
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~ 311 (601)
...+.+....|...+.|+.|-+|+..|..+.|.+..+||+++ ++.
T Consensus 134 --------------------------------~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~---g~~ 178 (343)
T KOG0286|consen 134 --------------------------------NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET---GQQ 178 (343)
T ss_pred --------------------------------cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc---ceE
Confidence 012334455678899999999988887779999999999987 555
Q ss_pred eEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
+ ..+.+|.+.|.++.++| +++.+++|+.|+..++||++.+.++++|.+ |...|++++|.|+|.
T Consensus 179 ~-----~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-----------hesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 179 T-----QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-----------HESDINSVRFFPSGD 242 (343)
T ss_pred E-----EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc-----------cccccceEEEccCCC
Confidence 4 67889999999999999 999999999999999999999999999999 999999999999999
Q ss_pred EEEEEecCCeEEEEEcCCceEEEEeeccC-CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcc
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWFISRLE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRR 469 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 469 (601)
-+++|+.|++.++||+...+....+.... ..+|++++||. .|++|++|..|.++.+||.-.++. ...
T Consensus 243 afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~-----------vg~ 310 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGER-----------VGV 310 (343)
T ss_pred eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccce-----------EEE
Confidence 99999999999999999988776655322 26899999999 999999999999999999988874 346
Q ss_pred cccCCCcEEEEEeCCC
Q 007489 470 YQEFPGEVIGLSFSPS 485 (601)
Q Consensus 470 ~~~~~~~v~~i~~~p~ 485 (601)
+.+|...|.++..+||
T Consensus 311 L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 311 LAGHENRVSCLGVSPD 326 (343)
T ss_pred eeccCCeeEEEEECCC
Confidence 7899999999999999
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-37 Score=268.90 Aligned_cols=282 Identities=16% Similarity=0.177 Sum_probs=249.7
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+|...|+.+-|+|+- .+++++.|++|++||..+|++...+++|...|..++|+..|++|++++.|=.+++||..+...
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~- 184 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR- 184 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH-
Confidence 899999999999999 889999999999999999999999999999999999999999999999999999999987321
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
+...+.+|.+.|.+++|. |.|. +++|++.|.+
T Consensus 185 ---------------c~ks~~gh~h~vS~V~f~---------P~gd------------------------~ilS~srD~t 216 (406)
T KOG0295|consen 185 ---------------CIKSLIGHEHGVSSVFFL---------PLGD------------------------HILSCSRDNT 216 (406)
T ss_pred ---------------HHHHhcCcccceeeEEEE---------ecCC------------------------eeeecccccc
Confidence 367788999999999998 7765 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|+.|+..+... .....+
T Consensus 217 ik~We~~tg~c---------------------------------------------------------------v~t~~~ 233 (406)
T KOG0295|consen 217 IKAWECDTGYC---------------------------------------------------------------VKTFPG 233 (406)
T ss_pred eeEEeccccee---------------------------------------------------------------EEeccC
Confidence 99999987321 122223
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC---------------CC
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD---------------SS 337 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d---------------~~ 337 (601)
|...+..++.+.||..+|+ +.+.++++|-+.+ ..+. ..+..|..+|.+++|.|. ++
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t---~~~k-----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT---KQCK-----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQ 305 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEecc---chhh-----hhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence 4567888999999999999 7999999999986 3332 566778888888888763 24
Q ss_pred eEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec
Q 007489 338 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 338 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 417 (601)
++.+++.|++|++||+.++.++.++.+ |...|..++|+|.|+||+++.+|+++++||+.+.++...++
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~g-----------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~- 373 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVG-----------HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE- 373 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEec-----------ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-
Confidence 899999999999999999999999999 99999999999999999999999999999999999998888
Q ss_pred cCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 418 LEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 418 ~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.|..-+++++|+. +..++++|+-|.++++|.
T Consensus 374 ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 5667899999999 888999999999999996
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-36 Score=270.28 Aligned_cols=323 Identities=14% Similarity=0.164 Sum_probs=264.1
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCc--cc--hhhhcc------c----cccceEEEEEeCCCCEEEEEee
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH--GT--LLQAHS------F----HKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~--~~--~~~~~~------~----h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
.|+..|.+.+|+|-. .|++|+.|...++|++.. +. ....|+ + -...|++++|+.+|..|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 599999999999865 789999999999999964 11 111111 1 2468999999999999999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
||.+++|+..... ...+..|..+|.++.|. ..|.
T Consensus 256 ~G~~riw~~~G~l------------------~~tl~~HkgPI~slKWn---------k~G~------------------- 289 (524)
T KOG0273|consen 256 DGEARIWNKDGNL------------------ISTLGQHKGPIFSLKWN---------KKGT------------------- 289 (524)
T ss_pred CcEEEEEecCchh------------------hhhhhccCCceEEEEEc---------CCCC-------------------
Confidence 9999999998876 57888999999999998 6665
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
+|++++.|+++.+||..+....+...
T Consensus 290 -----yilS~~vD~ttilwd~~~g~~~q~f~------------------------------------------------- 315 (524)
T KOG0273|consen 290 -----YILSGGVDGTTILWDAHTGTVKQQFE------------------------------------------------- 315 (524)
T ss_pred -----EEEeccCCccEEEEeccCceEEEeee-------------------------------------------------
Confidence 99999999999999987633221111
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCe
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 338 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~ 338 (601)
-+......+.|-.+..+..++.|+.|+++.+.. .... ..+.+|.+.|.++.|.|.|++
T Consensus 316 --------------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~---~~P~-----~t~~GH~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 316 --------------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGE---DRPV-----KTFIGHHGEVNALKWNPTGSL 373 (524)
T ss_pred --------------eccCCccceEEecCceEeecCCCceEEEEEecC---CCcc-----eeeecccCceEEEEECCCCce
Confidence 112223456666666666668999999999975 2222 556789999999999999999
Q ss_pred EEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC---------EEEEEecCCeEEEEEcCCc
Q 007489 339 LIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ---------WLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 339 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~---------~las~~~dg~i~iwd~~~~ 409 (601)
|++++.|++++||+.......+.|.. |...|..+.|||+|. .|++++.|++|++||+..+
T Consensus 374 LaS~SdD~TlkiWs~~~~~~~~~l~~-----------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSNSVHDLQA-----------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred EEEecCCCeeEeeecCCCcchhhhhh-----------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 99999999999999988888888888 999999999999753 7899999999999999999
Q ss_pred eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCC
Q 007489 410 RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSS 489 (601)
Q Consensus 410 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 489 (601)
.+...+.. |..+|.+++|+| ++++||+|+.||.|.+|+.+.+++ .+.+.+ .+.|..++|+.+ .+.
T Consensus 443 v~i~~f~k-H~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l-----------~~s~~~-~~~Ifel~Wn~~-G~k 507 (524)
T KOG0273|consen 443 VPIHTLMK-HQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKL-----------VKSYQG-TGGIFELCWNAA-GDK 507 (524)
T ss_pred ceeEeecc-CCCceEEEEecC-CCcEEEecCCCCeeEeccccchhe-----------eEeecC-CCeEEEEEEcCC-CCE
Confidence 99888764 668999999999 999999999999999999999985 333433 467999999998 344
Q ss_pred EEEEEcCceEEEEeCC
Q 007489 490 SVIIYSARAMCVIDFG 505 (601)
Q Consensus 490 ~~~~~~~~~~~~~~~~ 505 (601)
...-++....|++|+.
T Consensus 508 l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 508 LGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEecCCCceEEEec
Confidence 4455577888888874
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=272.59 Aligned_cols=283 Identities=13% Similarity=0.180 Sum_probs=248.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.-+..|..|.|.|+| +|++|+..|.+.+|+..+...-..+..|..+|.++.|+++|.+++||+.+|.|++|+.+-..
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-- 171 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-- 171 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence 345689999999999 99999999999999998777667788999999999999999999999999999999988765
Q ss_pred CCCCCCCccccceeEEecCcccc-ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAH-THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
+..+..| ...|++++|+ |++. .+++++.|+
T Consensus 172 ----------------Vk~~~ahh~eaIRdlafS---------pnDs------------------------kF~t~SdDg 202 (464)
T KOG0284|consen 172 ----------------VKIIQAHHAEAIRDLAFS---------PNDS------------------------KFLTCSDDG 202 (464)
T ss_pred ----------------hHHhhHhhhhhhheeccC---------CCCc------------------------eeEEecCCC
Confidence 3455555 5999999998 7665 999999999
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
+|++||....+.. ....
T Consensus 203 ~ikiWdf~~~kee---------------------------------------------------------------~vL~ 219 (464)
T KOG0284|consen 203 TIKIWDFRMPKEE---------------------------------------------------------------RVLR 219 (464)
T ss_pred eEEEEeccCCchh---------------------------------------------------------------heec
Confidence 9999998752210 1113
Q ss_pred cCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEE
Q 007489 273 KASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vw 351 (601)
+|.-.|.++.|+|.-.+|++ +.|+.|++||.++ +.++ ..+..|...|..+.|+|++++|++++.|..+++|
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS---g~cl-----~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS---GSCL-----ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCC---cchh-----hhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 45577999999999999999 7899999999997 7776 6788899999999999999999999999999999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
|+++.+.+.++.+ |...+++++|+|- ..+|.+|+.||.|..|.+...++...++..|...|++|+|+|
T Consensus 292 DiR~mkEl~~~r~-----------Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 292 DIRTMKELFTYRG-----------HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred ehhHhHHHHHhhc-----------chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc
Confidence 9998888999998 9999999999994 568889999999999999977777777777888999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC
Q 007489 431 QNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~ 451 (601)
-|.+|++|+.|.++++|.-.
T Consensus 361 -lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 361 -LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred -cceeEeecCCCcceeeeccC
Confidence 99999999999999999754
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=245.34 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=235.6
Q ss_pred CCceEEEEEEEeeC-C-eEEEEcCCCcEEEeeCCc---cchhhhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEEEec
Q 007489 35 GPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRH---GTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 35 ~h~~~V~~v~~s~~-g-~l~s~~~dg~i~vwd~~~---~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~ 108 (601)
+|.+.||.++|+|- | .|+|++.|..|++|+... -.+...+. +|+..|.+++|+|.|++|++|+.|.++.||.-.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 89999999999998 7 799999999999999984 33444443 699999999999999999999999999999877
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
.+. |.++..+.+|.+.|.+++|+ ++|. +|+++
T Consensus 92 ~~e---------------fecv~~lEGHEnEVK~Vaws---------~sG~------------------------~LATC 123 (312)
T KOG0645|consen 92 DGE---------------FECVATLEGHENEVKCVAWS---------ASGN------------------------YLATC 123 (312)
T ss_pred CCc---------------eeEEeeeeccccceeEEEEc---------CCCC------------------------EEEEe
Confidence 654 67789999999999999998 8886 99999
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.|..|++|.......+ .+.
T Consensus 124 SRDKSVWiWe~deddEf------------------------------------------------------------ec~ 143 (312)
T KOG0645|consen 124 SRDKSVWIWEIDEDDEF------------------------------------------------------------ECI 143 (312)
T ss_pred eCCCeEEEEEecCCCcE------------------------------------------------------------EEE
Confidence 99999999998742111 223
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc
Q 007489 269 QVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
.+..+|...|..+.|+|...+|++ +.|++|++|+-...+ -|... ..+.+|...|.+++|++.|.+|++++.|++
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd----dW~c~-~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD----DWECV-QTLDGHENTVWSLAFDNIGSRLVSCSDDGT 218 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC----CeeEE-EEecCccceEEEEEecCCCceEEEecCCcc
Confidence 344466788999999999999998 799999999887411 24333 678889999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc------eEEEEeeccCCC
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ------RQHWFISRLEGA 421 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~------~~~~~~~~~~~~ 421 (601)
|+||...+ .+... |...+..++|. ...||+++.|+.|++|.-... +........|..
T Consensus 219 v~Iw~~~~-----~~~~~----------~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 219 VSIWRLYT-----DLSGM----------HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred eEeeeecc-----Ccchh----------cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 99998652 12221 78889999996 568999999999999986542 111123345667
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
.|++++|.|.-.++|++++.||.|++|.++
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 899999999337899999999999999875
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=263.66 Aligned_cols=276 Identities=17% Similarity=0.230 Sum_probs=236.4
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc-cchhhhcccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKG 79 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~ 79 (601)
+++++.|++|++||..+|++...++ ||+..|..++|+..| .||+++.|-.+++||..+ .+++..+.+|..
T Consensus 123 v~~as~d~tikv~D~~tg~~e~~Lr--------GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETGELERSLR--------GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred EEEecCCceEEEEEccchhhhhhhh--------ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 6788899999999999999998898 999999999999999 899999999999999986 678889999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++|-|.|.+|++++.|.+|+.|++.++.+ +.++.+|...|+.++.. .||.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-----------------v~t~~~h~ewvr~v~v~---------~DGt 248 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-----------------VKTFPGHSEWVRMVRVN---------QDGT 248 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEeccccee-----------------EEeccCchHhEEEEEec---------CCee
Confidence 999999999999999999999999999999986 89999999999999987 7776
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC---CcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT---KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++++++.|.+|++|-..+.+ .+..|. ..+.+++|.|...+
T Consensus 249 ------------------------i~As~s~dqtl~vW~~~t~~~k~~lR~hE----------h~vEci~wap~~~~--- 291 (406)
T KOG0295|consen 249 ------------------------IIASCSNDQTLRVWVVATKQCKAELREHE----------HPVECIAWAPESSY--- 291 (406)
T ss_pred ------------------------EEEecCCCceEEEEEeccchhhhhhhccc----------cceEEEEecccccC---
Confidence 99999999999999998852 233333 33334444332111
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
..|....-+. .++++.+ +.|++|++||+.+ +.++
T Consensus 292 ---------------------------------------~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t---g~cL-- 327 (406)
T KOG0295|consen 292 ---------------------------------------PSISEATGSTNGGQVLGSGSRDKTIKIWDVST---GMCL-- 327 (406)
T ss_pred ---------------------------------------cchhhccCCCCCccEEEeecccceEEEEeccC---CeEE--
Confidence 1111111111 3467777 7999999999998 7776
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
.++.+|.+.|..++|+|.|+||+++.+|+++++||++++++++++.. |..-++++.|+.+..|+++
T Consensus 328 ---~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-----------h~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 328 ---FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-----------HEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred ---EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-----------CcceeEEEecCCCCceEEe
Confidence 56789999999999999999999999999999999999999999997 8999999999999999999
Q ss_pred EecCCeEEEEEc
Q 007489 395 VNCFGDVYIFNL 406 (601)
Q Consensus 395 ~~~dg~i~iwd~ 406 (601)
|+-|..+++|.-
T Consensus 394 GsVdqt~KvwEc 405 (406)
T KOG0295|consen 394 GSVDQTVKVWEC 405 (406)
T ss_pred ccccceeeeeec
Confidence 999999999963
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=248.99 Aligned_cols=285 Identities=18% Similarity=0.215 Sum_probs=238.8
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC-ccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
.+|++.|+.+.|+|+| .||||+.|..|.+|+.. ..+-...+++|.+.|..+.|.+|++.|+++|.|.+|+.||.++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 4899999999999999 99999999999999964 344556788999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
. ...++.|..-|.++.-+ .. +..++.+++.|
T Consensus 124 ~-----------------~rk~k~h~~~vNs~~p~-----------rr---------------------g~~lv~SgsdD 154 (338)
T KOG0265|consen 124 R-----------------IRKHKGHTSFVNSLDPS-----------RR---------------------GPQLVCSGSDD 154 (338)
T ss_pred e-----------------eehhccccceeeecCcc-----------cc---------------------CCeEEEecCCC
Confidence 6 77889999999988733 21 22488899999
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
+++++||++.....+...
T Consensus 155 ~t~kl~D~R~k~~~~t~~-------------------------------------------------------------- 172 (338)
T KOG0265|consen 155 GTLKLWDIRKKEAIKTFE-------------------------------------------------------------- 172 (338)
T ss_pred ceEEEEeecccchhhccc--------------------------------------------------------------
Confidence 999999998633222111
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
....++++.|..++..+.+ +-|+.|++||++. ...+ ..+.+|...|+.+..+|+|.++.+-+.|.++++
T Consensus 173 --~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~---~d~~-----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 173 --NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK---NDGL-----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred --cceeEEEEEecccccceeeccccCceeeecccc---Ccce-----EEeecccCceeeEEeccCCCccccccccceEEE
Confidence 1256889999998888777 7999999999986 3333 567899999999999999999999999999999
Q ss_pred EEcCCC----ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 351 VDVSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 351 wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
||++.. .++..|.++... .......++|||++..+.+|+.|..+++||.........++.+ ...|.++
T Consensus 243 wd~rp~~p~~R~v~if~g~~hn-------feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~ 314 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHN-------FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEV 314 (338)
T ss_pred EEecccCCCCceEEEeecchhh-------hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEe
Confidence 998543 357778775410 1234567899999999999999999999999998888888864 4689999
Q ss_pred EecCCCCCEEEEEeCCCeEEEE
Q 007489 427 GFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~dg~v~vw 448 (601)
+|+| ...+|.+++.|.+|++=
T Consensus 315 ~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 315 DFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred eecC-CCcEEEEeccCceeEee
Confidence 9999 99999999999999874
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=278.08 Aligned_cols=360 Identities=16% Similarity=0.221 Sum_probs=282.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|+++-..|.|++||.+-|.++.++. .|.++|..++|+|++ .++||+.|-.|+||+.++.+++.++.+|-.
T Consensus 23 wILtslHsG~IQlWDYRM~tli~rFd--------eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD 94 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTLIDRFD--------EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD 94 (1202)
T ss_pred EEEEeecCceeeeehhhhhhHHhhhh--------ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc
Confidence 47888999999999999999999998 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|..+.|++.-.+|+|+|.|.+|+||+..+..+ +..+.+|.+.|.|..|+ |...
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-----------------iavltGHnHYVMcAqFh---------ptED 148 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-----------------IAVLTGHNHYVMCAQFH---------PTED 148 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEeccCCce-----------------EEEEecCceEEEeeccC---------Cccc
Confidence 999999999999999999999999999999886 89999999999999998 6554
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.++|++.|.+|++||+.....-...+. ..+.. .. +.. +
T Consensus 149 ------------------------lIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~-----~~-------~~~-----~ 186 (1202)
T KOG0292|consen 149 ------------------------LIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQ-----MR-------GQQ-----G 186 (1202)
T ss_pred ------------------------eEEEecccceEEEEeecchhccCCCCC-Cchhh-----hh-------ccc-----c
Confidence 999999999999999986443221110 00000 00 000 0
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
...+ .|. .-..+..+..+|+..|+-++|+|.-.+|++ ++|..|++|++.. .+.|++.
T Consensus 187 ~~dL---------------fg~-~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne----tKaWEvD-- 244 (1202)
T KOG0292|consen 187 NSDL---------------FGQ-TDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----TKAWEVD-- 244 (1202)
T ss_pred chhh---------------cCC-cCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc----ccceeeh--
Confidence 0000 010 012455566788999999999999999999 6899999999984 4557654
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 398 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d 398 (601)
.+.+|.+.|.++-|+|....+++.++|+.|+|||+...+.+++|.. ..+.-+.++.+|..+++|+|-+.
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-----------endRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-----------ENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-----------cCCeEEEEEecCCcceeeeecCC
Confidence 5789999999999999999999999999999999999999999987 67889999999999999888665
Q ss_pred CeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEE
Q 007489 399 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVI 478 (601)
Q Consensus 399 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 478 (601)
| +.||.++... +.. +.+ ++.|...- |..|+-+|+.+.+-+.... .+.......++.
T Consensus 314 G-m~VFkleREr-----------pa~--~v~---~n~LfYvk-d~~i~~~d~~t~~d~~v~~------lr~~g~~~~~~~ 369 (1202)
T KOG0292|consen 314 G-MIVFKLERER-----------PAY--AVN---GNGLFYVK-DRFIRSYDLRTQKDTAVAS------LRRPGTLWQPPR 369 (1202)
T ss_pred c-eEEEEEcccC-----------ceE--EEc---CCEEEEEc-cceEEeeeccccccceeEe------ccCCCcccCCcc
Confidence 5 6667544222 222 333 33455444 8899999998865332211 111111236789
Q ss_pred EEEeCCCCCCCEEEEEc
Q 007489 479 GLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 479 ~i~~~p~~~~~~~~~~~ 495 (601)
++.++|. .+.+++.+
T Consensus 370 smsYNpa--e~~vlics 384 (1202)
T KOG0292|consen 370 SLSYNPA--ENAVLICS 384 (1202)
T ss_pred eeeeccc--cCeEEEEe
Confidence 9999998 66666664
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.5e-35 Score=252.94 Aligned_cols=330 Identities=15% Similarity=0.196 Sum_probs=264.2
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.|...|++++.+|+. .+++|+.|..-.+|+..+|..+..+.+|+..|+++.|+.||.+|+||+.+|.|+||+..++..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~- 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE- 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence 899999999999977 889999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
+|. +.....++.=|.|+ |-+. +|+.|+.||.
T Consensus 141 ------------~~~----~~~e~~dieWl~WH---------p~a~------------------------illAG~~DGs 171 (399)
T KOG0296|consen 141 ------------QWK----LDQEVEDIEWLKWH---------PRAH------------------------ILLAGSTDGS 171 (399)
T ss_pred ------------EEE----eecccCceEEEEec---------cccc------------------------EEEeecCCCc
Confidence 333 22345667777777 6554 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
+++|.+.+. ...++..+
T Consensus 172 vWmw~ip~~---------------------------------------------------------------~~~kv~~G 188 (399)
T KOG0296|consen 172 VWMWQIPSQ---------------------------------------------------------------ALCKVMSG 188 (399)
T ss_pred EEEEECCCc---------------------------------------------------------------ceeeEecC
Confidence 999998752 12344556
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
|..++++-.|.|+|+.+++ ..|++|++|++.+ +..+.++.... .....++.++.++..++.|+.++.+++.+
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt---g~p~~~~~~~e----~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT---GQPLHKITQAE----GLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCC---CceeEEecccc----cCcCCccccccccceeEeccCCccEEEEc
Confidence 6788999999999999999 5899999999987 66664443222 33567889999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCC---eeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPP---ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
..+|+.+..+.+..... ...+... |-.+.+|..-.+.|+|+.||+|.|||+...+.+...+ |..+|+.+.|-
T Consensus 262 ~~sgKVv~~~n~~~~~l---~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~ 336 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPEL---KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWL 336 (399)
T ss_pred cccceEEEecCCCCccc---cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEEEc
Confidence 99999888777421110 1113334 4445555566688999999999999999888765554 44679999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeC
Q 007489 430 PQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDF 504 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~ 504 (601)
+ ..+|++++.+|.|+.||..+|++ ...+.+|..+|.+++.+|+ .+.++.. +++...+|+.
T Consensus 337 ~--t~~l~t~c~~g~v~~wDaRtG~l-----------~~~y~GH~~~Il~f~ls~~--~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 337 N--TDYLLTACANGKVRQWDARTGQL-----------KFTYTGHQMGILDFALSPQ--KRLVVTVSDDNTALVFEV 397 (399)
T ss_pred C--cchheeeccCceEEeeeccccce-----------EEEEecCchheeEEEEcCC--CcEEEEecCCCeEEEEec
Confidence 7 46899999999999999999985 5689999999999999998 4444433 4444555554
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.3e-35 Score=253.49 Aligned_cols=312 Identities=15% Similarity=0.208 Sum_probs=246.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
++|||+.|-.-.||++.+|..+..+. +|...|.++.|+.|| +||+|+.+|.|+||+..++.....+...-+
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~elt--------gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~ 149 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELT--------GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE 149 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEec--------CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccC
Confidence 57999999999999999999999998 999999999999999 999999999999999999998888876778
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.-+.|+|.+..|++|+.||.+.+|.+.++.. .+.+.+|..++.+=.|. |+|+
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-----------------~kv~~Gh~~~ct~G~f~---------pdGK 203 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-----------------CKVMSGHNSPCTCGEFI---------PDGK 203 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcce-----------------eeEecCCCCCccccccc---------CCCc
Confidence 899999999999999999999999999998543 67889999999999998 9998
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.++++..||+|++|++.+.+.+....
T Consensus 204 ------------------------r~~tgy~dgti~~Wn~ktg~p~~~~~------------------------------ 229 (399)
T KOG0296|consen 204 ------------------------RILTGYDDGTIIVWNPKTGQPLHKIT------------------------------ 229 (399)
T ss_pred ------------------------eEEEEecCceEEEEecCCCceeEEec------------------------------
Confidence 99999999999999999854222111
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEee-
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK- 317 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~- 317 (601)
........++.++..+..+.. ..++.+++..... ++.+. ...
T Consensus 230 --------------------------------~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s---gKVv~-~~n~ 273 (399)
T KOG0296|consen 230 --------------------------------QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS---GKVVN-CNNG 273 (399)
T ss_pred --------------------------------ccccCcCCccccccccceeEeccCCccEEEEcccc---ceEEE-ecCC
Confidence 111122334444444444433 2333333333222 11110 000
Q ss_pred ---ecCCcCcc---ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 318 ---RQLPRKLQ---FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 318 ---~~~~~~~~---~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
...+.+.. .|-++.++..-.+.|+|+-||+|.|||+...++.+.+. |...|+.+.|-+ ..+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~------------he~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE------------HEDGVTKLKWLN-TDY 340 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc------------CCCceEEEEEcC-cch
Confidence 11122333 34444555556678999999999999998877766666 888999999988 789
Q ss_pred EEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 392 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 392 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
|++++.+|.|+.||..++++...+.. |...|.+++++| +.+++++++.|++.+||++.
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeeccCceEEeeeccccceEEEEec-CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999877764 567999999999 99999999999999999875
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=254.63 Aligned_cols=285 Identities=17% Similarity=0.236 Sum_probs=243.6
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
++|.++|.||++.|-+ .+++|+.|++|+|||+.+|++..++.+|-..|..+++|+-..|+++++.|+.|+.||++..+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 4999999999999988 899999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
++.+.+|-+.|.+++.. |.-. .|++|+.|.
T Consensus 228 -----------------IR~YhGHlS~V~~L~lh---------PTld------------------------vl~t~grDs 257 (460)
T KOG0285|consen 228 -----------------IRHYHGHLSGVYCLDLH---------PTLD------------------------VLVTGGRDS 257 (460)
T ss_pred -----------------HHHhccccceeEEEecc---------ccce------------------------eEEecCCcc
Confidence 77888999999999998 5543 999999999
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
++++||+++.. -.....
T Consensus 258 t~RvWDiRtr~---------------------------------------------------------------~V~~l~ 274 (460)
T KOG0285|consen 258 TIRVWDIRTRA---------------------------------------------------------------SVHVLS 274 (460)
T ss_pred eEEEeeecccc---------------------------------------------------------------eEEEec
Confidence 99999999722 112223
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEE
Q 007489 273 KASRKIICSTISNSG-MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g-~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vw 351 (601)
+|...|..+.+.|-. +.+..+.|++|++||+.. +... ..+..|...+.+++.+|....+|+++.|. |+-|
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a---gkt~-----~tlt~hkksvral~lhP~e~~fASas~dn-ik~w 345 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA---GKTM-----ITLTHHKKSVRALCLHPKENLFASASPDN-IKQW 345 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeecc---Ccee-----EeeecccceeeEEecCCchhhhhccCCcc-ceec
Confidence 456788888888754 444448999999999997 4443 55677888999999999999999998776 9999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc--C-----CCcee
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL--E-----GASVT 424 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~v~ 424 (601)
++..|..+..+.+ |+.-|++++...|+ ++++|+.+|.+..||.+++-....+... . ...|.
T Consensus 346 ~~p~g~f~~nlsg-----------h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 346 KLPEGEFLQNLSG-----------HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred cCCccchhhcccc-----------ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccccccee
Confidence 9999999988888 89999999997775 7889999999999999887654333211 1 15789
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 425 AAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+.+|.. .+..|++|..|.+|++|.-+..
T Consensus 414 as~fDk-tg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 414 ASCFDK-TGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred EEeecc-cCceEEeccCCcceEEEecccc
Confidence 999999 9999999999999999986543
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=260.94 Aligned_cols=286 Identities=14% Similarity=0.175 Sum_probs=237.8
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc---chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
.|.+.||-+.||++| +|||++.|.+..+|++... ++..++.+|..+|..+.||||.++|++|+.|..+.+||..++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 799999999999999 9999999999999987543 346788899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccccceeEEecCc-cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
.+ ...+ .+|...+.+.+|. |||. .+++|+
T Consensus 302 d~-----------------~~~y~~~~~~S~~sc~W~---------pDg~------------------------~~V~Gs 331 (519)
T KOG0293|consen 302 DL-----------------RHLYPSGLGFSVSSCAWC---------PDGF------------------------RFVTGS 331 (519)
T ss_pred hh-----------------hhhcccCcCCCcceeEEc---------cCCc------------------------eeEecC
Confidence 85 1111 2346889999999 9997 899999
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
.|+.+..||+.... +.-|.-
T Consensus 332 ~dr~i~~wdlDgn~-------------------------------------~~~W~g----------------------- 351 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNI-------------------------------------LGNWEG----------------------- 351 (519)
T ss_pred CCCcEEEecCCcch-------------------------------------hhcccc-----------------------
Confidence 99999999987511 111110
Q ss_pred EEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcE
Q 007489 270 VKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI 348 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i 348 (601)
.....|.++++++||++++. +.|..+++|+.... .. ..+.....+|+++.+|.|++++++--.+..+
T Consensus 352 ---vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~---~d------r~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 352 ---VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR---VD------RGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred ---cccceeEEEEEcCCCcEEEEEecccceeeechhhh---hh------hccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 01255889999999998887 89999999998761 11 2233445689999999999999999999999
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
++||++..+.++.+.++. ....+..-+|.- +..++|+|+.|+.|+||+..++++...+.. |...|.+++
T Consensus 420 ~LWDl~e~~lv~kY~Ghk---------q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVs 489 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHK---------QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVS 489 (519)
T ss_pred EEeecchhhHHHHhhccc---------ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-CcceeeEEe
Confidence 999999888999998854 234455556654 558999999999999999999999988886 557999999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
|+|.+..++|+|+.||+|+||.+..
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 9998889999999999999998764
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-35 Score=278.86 Aligned_cols=306 Identities=17% Similarity=0.210 Sum_probs=240.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.-...++|..|++|+ .||.|-.|..|++|.+... .+..+++ ...+. .+=+.+.|-.+.+.|......
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~~~l~---------~~d~~sad~~~~~~D~~~~~~- 443 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-ASDLS---------NIDTESADVDVDMLDDDSSGT- 443 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-hhhhc---------cccccccchhhhhccccCCce-
Confidence 345668999999999 8888889999999998744 3344442 22211 111333344455566555443
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+.+|+++|....|+ |+.+ +|++++.|++
T Consensus 444 ----------------~~~L~GH~GPVyg~sFs---------Pd~r------------------------fLlScSED~s 474 (707)
T KOG0263|consen 444 ----------------SRTLYGHSGPVYGCSFS---------PDRR------------------------FLLSCSEDSS 474 (707)
T ss_pred ----------------eEEeecCCCceeeeeec---------cccc------------------------ceeeccCCcc
Confidence 55689999999999999 9887 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
+++|.+.+.. .+ ....+
T Consensus 475 vRLWsl~t~s--------------------------------------------------------------~~-V~y~G 491 (707)
T KOG0263|consen 475 VRLWSLDTWS--------------------------------------------------------------CL-VIYKG 491 (707)
T ss_pred eeeeecccce--------------------------------------------------------------eE-EEecC
Confidence 9999998722 12 22236
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
|..+|..+.|+|-|-++|+ +.|++.++|.... ...+ +.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||
T Consensus 492 H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~---~~Pl-----RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWD 563 (707)
T KOG0263|consen 492 HLAPVWDVQFAPRGYYFATASHDQTARLWSTDH---NKPL-----RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWD 563 (707)
T ss_pred CCcceeeEEecCCceEEEecCCCceeeeeeccc---CCch-----hhhcccccccceEEECCcccccccCCCCceEEEEE
Confidence 6788999999999999999 7999999999876 3333 56789999999999999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 432 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 432 (601)
+.+|..++.|.+ |.++|++++|||+|++||+|+.||.|.|||+.+++.+..+..+ .+.|.++.|+. +
T Consensus 564 v~~G~~VRiF~G-----------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~-d 630 (707)
T KOG0263|consen 564 VSTGNSVRIFTG-----------HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSR-D 630 (707)
T ss_pred cCCCcEEEEecC-----------CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEec-C
Confidence 999999999999 9999999999999999999999999999999999988777764 67999999999 9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcc----cchhc---------ccCCcCcccccCCCcEEEEEeCCC
Q 007489 433 NNVLIITTSSNQVYVFDVEAKQLG----EWSMQ---------HTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~---------~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
|..||+++.|++|++||+..-... ..+.. ....+...+.....+|.++.|...
T Consensus 631 g~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred CCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence 999999999999999998754321 00000 011234455555567777777655
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.7e-36 Score=267.75 Aligned_cols=284 Identities=13% Similarity=0.171 Sum_probs=233.8
Q ss_pred CCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCc-cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
+|...|+++.|.| .+ +|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..++|+|.|+.|++||+++|+
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 9999999999999 66 899999999999999976 89999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccccceeEEecCcccc-ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAH-THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
+ .. +.| ...+.++.|. ||+. +.+++|+.
T Consensus 292 ~-----------------~~--~f~~~~~~~cvkf~---------pd~~-----------------------n~fl~G~s 320 (503)
T KOG0282|consen 292 V-----------------LS--RFHLDKVPTCVKFH---------PDNQ-----------------------NIFLVGGS 320 (503)
T ss_pred E-----------------EE--EEecCCCceeeecC---------CCCC-----------------------cEEEEecC
Confidence 5 22 223 3456788887 7774 59999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|+.|+.||+++.+..+...
T Consensus 321 d~ki~~wDiRs~kvvqeYd------------------------------------------------------------- 339 (503)
T KOG0282|consen 321 DKKIRQWDIRSGKVVQEYD------------------------------------------------------------- 339 (503)
T ss_pred CCcEEEEeccchHHHHHHH-------------------------------------------------------------
Confidence 9999999999744322211
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
.|-..|..+.|-++|+.+++ ++++++++|+.+. +..+ +.......-...++..+|++.+++.-+.|+.|.
T Consensus 340 --~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~---~v~i----k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ 410 (503)
T KOG0282|consen 340 --RHLGAILDITFVDEGRRFISSSDDKSVRIWENRI---PVPI----KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIA 410 (503)
T ss_pred --hhhhheeeeEEccCCceEeeeccCccEEEEEcCC---Cccc----hhhcchhhccCcceecCCCCCeehhhccCceEE
Confidence 23467889999999988887 7999999999986 2221 111222233567899999999999999999999
Q ss_pred EEEcCCC---ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 350 VVDVSSS---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 350 vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
+|.+... ...+.|.++. ..+.-..+.|||||.+|++|+.||.+.+||..+.+....++. |..+++.+
T Consensus 411 ifs~~~~~r~nkkK~feGh~---------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~~~ci~v 480 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHS---------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HDQPCIGV 480 (503)
T ss_pred EEecccccccCHhhhhccee---------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CCcceEEE
Confidence 9996432 2345666643 356677899999999999999999999999999998877775 45799999
Q ss_pred EecCCCCCEEEEEeCCCeEEEEE
Q 007489 427 GFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.|+|.....+|+++.||.|++|+
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 99997778899999999999996
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=255.58 Aligned_cols=276 Identities=13% Similarity=0.167 Sum_probs=232.7
Q ss_pred CceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCC
Q 007489 36 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN 115 (601)
Q Consensus 36 h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 115 (601)
....|+|+.+. |+.+++|..|++|+|||..+-.++..+.||++.|.|+.|. .+.|++|+.|.+|++||.+++++
T Consensus 196 ~skgVYClQYD-D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~--- 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP--- 269 (499)
T ss_pred cCCceEEEEec-chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch---
Confidence 45789999984 5599999999999999999999999999999999999995 67999999999999999999997
Q ss_pred CCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEE
Q 007489 116 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 195 (601)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~ 195 (601)
+..+..|...|..+.|+ +| ++++++.|.++.
T Consensus 270 --------------l~tlihHceaVLhlrf~----------ng-------------------------~mvtcSkDrsia 300 (499)
T KOG0281|consen 270 --------------LNTLIHHCEAVLHLRFS----------NG-------------------------YMVTCSKDRSIA 300 (499)
T ss_pred --------------hhHHhhhcceeEEEEEe----------CC-------------------------EEEEecCCceeE
Confidence 88999999999999995 33 999999999999
Q ss_pred EEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCC
Q 007489 196 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (601)
+||+...... .+.+...+|.
T Consensus 301 VWdm~sps~i------------------------------------------------------------t~rrVLvGHr 320 (499)
T KOG0281|consen 301 VWDMASPTDI------------------------------------------------------------TLRRVLVGHR 320 (499)
T ss_pred EEeccCchHH------------------------------------------------------------HHHHHHhhhh
Confidence 9998752210 1111222345
Q ss_pred CCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 276 RKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
..|+.+.|+. +++++ +.|.++++|++.+ ...+ ..+.+|...|-|+.+ .++++++|+.|.+|++||+.
T Consensus 321 AaVNvVdfd~--kyIVsASgDRTikvW~~st---~efv-----Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 321 AAVNVVDFDD--KYIVSASGDRTIKVWSTST---CEFV-----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred hheeeecccc--ceEEEecCCceEEEEeccc---eeee-----hhhhcccccceehhc--cCeEEEecCCCceEEEEecc
Confidence 6677777754 58888 7999999999987 4444 678899999998887 58899999999999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE---------eeccCCCceeE
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF---------ISRLEGASVTA 425 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~v~~ 425 (601)
.|.+++.+++ |+.-|.++.| |.+.+++|..||.|+|||+..+..... +. -|.+.|..
T Consensus 389 ~G~cLRvLeG-----------HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFr 454 (499)
T KOG0281|consen 389 CGACLRVLEG-----------HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV-EHSGRVFR 454 (499)
T ss_pred ccHHHHHHhc-----------hHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhh-hccceeEE
Confidence 9999999999 8999999999 889999999999999999987654311 11 24568999
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 426 AGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.| |...+++++.|.+|.|||...+..
T Consensus 455 LQF---D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 455 LQF---DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred Eee---cceEEEeccCCCeEEEEEcCCCCc
Confidence 999 557899999999999999988753
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=234.85 Aligned_cols=273 Identities=17% Similarity=0.187 Sum_probs=215.4
Q ss_pred CEEeeecCCcEEEEECCC---CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc--cchhhhc
Q 007489 1 MLYSGSSDGYIRSWDAKL---GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--GTLLQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~--~~~~~~~ 74 (601)
.|||||.|..||||+... -.+...+.. +|+..|.+++|+|.| +|++|+.|.++.||.-.. .+++.++
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee
Confidence 389999999999999874 334444432 799999999999999 999999999999997654 4678999
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
.||...|.|++|+++|++|+++++|+.|-||.+..+. .+.+...+..|+.+|..+.|+
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--------------Efec~aVL~~HtqDVK~V~WH-------- 159 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--------------EFECIAVLQEHTQDVKHVIWH-------- 159 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--------------cEEEEeeeccccccccEEEEc--------
Confidence 9999999999999999999999999999999998554 366788999999999999999
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|... +|++++.|.+|++|.-...
T Consensus 160 -Pt~d------------------------lL~S~SYDnTIk~~~~~~d-------------------------------- 182 (312)
T KOG0645|consen 160 -PTED------------------------LLFSCSYDNTIKVYRDEDD-------------------------------- 182 (312)
T ss_pred -CCcc------------------------eeEEeccCCeEEEEeecCC--------------------------------
Confidence 6543 9999999999999986520
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~ 313 (601)
..+..+.++ ..|...|.+++|++.|..+++ +.|++++||.+..
T Consensus 183 ---------------------------ddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-------- 226 (312)
T KOG0645|consen 183 ---------------------------DDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-------- 226 (312)
T ss_pred ---------------------------CCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeecc--------
Confidence 011122222 234568999999999988887 7999999998764
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccC-CC
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQ 390 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~ 390 (601)
.-...|...+..++|. ...|++++.|+.|++|.....- +...+-.. ....|...|++++|.|. .+
T Consensus 227 ----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~------~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 227 ----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK------KEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred ----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh------hhcccccccceEEEcCCCCC
Confidence 1122345678889998 4489999999999999865321 11111100 01128889999999995 77
Q ss_pred EEEEEecCCeEEEEEcC
Q 007489 391 WLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~ 407 (601)
.|++|+.||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999864
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.9e-33 Score=264.00 Aligned_cols=281 Identities=22% Similarity=0.299 Sum_probs=240.0
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+|...|++++|+|++ .|++++.+|.|++|++.+++....+..|...+.++.|++++++|++++.|+.|++|++..++.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~- 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC- 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-
Confidence 899999999999998 899999999999999998888888889999999999999999999999999999999988653
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+..|...+.++.+. ++++ ++++++.|+.
T Consensus 86 ----------------~~~~~~~~~~i~~~~~~---------~~~~------------------------~~~~~~~~~~ 116 (289)
T cd00200 86 ----------------VRTLTGHTSYVSSVAFS---------PDGR------------------------ILSSSSRDKT 116 (289)
T ss_pred ----------------eEEEeccCCcEEEEEEc---------CCCC------------------------EEEEecCCCe
Confidence 45666788899999998 6654 8888888999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
+.+|++.+.. ....+. .
T Consensus 117 i~~~~~~~~~--------------------------------------------------------------~~~~~~-~ 133 (289)
T cd00200 117 IKVWDVETGK--------------------------------------------------------------CLTTLR-G 133 (289)
T ss_pred EEEEECCCcE--------------------------------------------------------------EEEEec-c
Confidence 9999987411 011111 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAYSD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
+...+.+++++|++.+++++. ++.+++|++.. +..+ ..+..+...+.++.|+|+++.+++++.++.|++||
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCV-----ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc---cccc-----eeEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 456799999999999999865 99999999975 2222 22335666899999999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 432 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 432 (601)
+..++.+..+.. |...+.+++|+|++.++++++.||.|++|++.+++....+. .|...|.+++|+| +
T Consensus 206 ~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~-~ 272 (289)
T cd00200 206 LSTGKCLGTLRG-----------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSP-D 272 (289)
T ss_pred CCCCceecchhh-----------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECC-C
Confidence 998888888866 78899999999999999999889999999999888777776 4556899999999 9
Q ss_pred CCEEEEEeCCCeEEEEE
Q 007489 433 NNVLIITTSSNQVYVFD 449 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vwd 449 (601)
+.+|++++.|+.|++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 99999999999999996
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=244.34 Aligned_cols=275 Identities=17% Similarity=0.208 Sum_probs=234.1
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+++||+.|++|.|||+.+|++..++. ||-..|..|++|+-. ++.+++.|+.|+.||++..+.++.+.+|-+
T Consensus 165 wf~tgs~DrtikIwDlatg~Lkltlt--------Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS 236 (460)
T KOG0285|consen 165 WFATGSADRTIKIWDLATGQLKLTLT--------GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS 236 (460)
T ss_pred eEEecCCCceeEEEEcccCeEEEeec--------chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc
Confidence 58999999999999999999999998 999999999999988 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.|++.+|.-..|++|+.|.++++||+++... +..+.+|...|..+.+. |-+.
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-----------------V~~l~GH~~~V~~V~~~---------~~dp 290 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-----------------VHVLSGHTNPVASVMCQ---------PTDP 290 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccce-----------------EEEecCCCCcceeEEee---------cCCC
Confidence 999999999999999999999999999999775 78899999999999986 4443
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.+++|+.|++|++||+...+.
T Consensus 291 ------------------------qvit~S~D~tvrlWDl~agkt----------------------------------- 311 (460)
T KOG0285|consen 291 ------------------------QVITGSHDSTVRLWDLRAGKT----------------------------------- 311 (460)
T ss_pred ------------------------ceEEecCCceEEEeeeccCce-----------------------------------
Confidence 899999999999999986321
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
......|...+.+++.+|....+|++....++-|++.. +..+ ..
T Consensus 312 ----------------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~---g~f~-----~n 355 (460)
T KOG0285|consen 312 ----------------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPE---GEFL-----QN 355 (460)
T ss_pred ----------------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCc---cchh-----hc
Confidence 12223455779999999999999998888999999975 4443 44
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
+.+|..-|++++...|+ ++++|+.+|.+.+||.++|-..+.+..... . ..-.....|.+.+|...|..|++|..|.
T Consensus 356 lsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq--p-GSl~sEagI~as~fDktg~rlit~eadK 431 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ--P-GSLESEAGIFASCFDKTGSRLITGEADK 431 (460)
T ss_pred cccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccccc--C-CccccccceeEEeecccCceEEeccCCc
Confidence 78888999999998887 788899999999999988765443321100 0 0011456799999999999999999999
Q ss_pred eEEEEEcCC
Q 007489 400 DVYIFNLEI 408 (601)
Q Consensus 400 ~i~iwd~~~ 408 (601)
+|++|.-+.
T Consensus 432 tIk~~keDe 440 (460)
T KOG0285|consen 432 TIKMYKEDE 440 (460)
T ss_pred ceEEEeccc
Confidence 999997654
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.1e-34 Score=272.75 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=202.2
Q ss_pred CEEeeecCCcEEEEECCCCc--------eEEEE-----------Eec-cC---CCCCCCceEEEEEEEeeCC-eEEEEcC
Q 007489 1 MLYSGSSDGYIRSWDAKLGY--------EIYRI-----------TVG-LG---GLGSGPELCIWSLLSLRCG-TLVSADS 56 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~--------~~~~~-----------~~~-~~---~~~~~h~~~V~~v~~s~~g-~l~s~~~ 56 (601)
+||.|..|.+|++|.+...+ .+..+ ... .. ..+.||.++|+.+.|+|+. .|++++.
T Consensus 392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSE 471 (707)
T KOG0263|consen 392 MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSE 471 (707)
T ss_pred hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccC
Confidence 57899999999999986311 01111 000 00 0124999999999999999 9999999
Q ss_pred CCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc
Q 007489 57 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 136 (601)
Q Consensus 57 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 136 (601)
|++|++|.+.+..++-.+++|..+|+++.|+|.|-|++|||.|++.++|....... ++.+.+|
T Consensus 472 D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P-----------------lRifagh 534 (707)
T KOG0263|consen 472 DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP-----------------LRIFAGH 534 (707)
T ss_pred CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc-----------------hhhhccc
Confidence 99999999999999999999999999999999999999999999999999988664 7888999
Q ss_pred ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCc
Q 007489 137 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 216 (601)
Q Consensus 137 ~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 216 (601)
-.+|.|+.|+ |+.. ++++|+.|.++++||..+..
T Consensus 535 lsDV~cv~FH---------PNs~------------------------Y~aTGSsD~tVRlWDv~~G~------------- 568 (707)
T KOG0263|consen 535 LSDVDCVSFH---------PNSN------------------------YVATGSSDRTVRLWDVSTGN------------- 568 (707)
T ss_pred ccccceEEEC---------Cccc------------------------ccccCCCCceEEEEEcCCCc-------------
Confidence 9999999998 8876 99999999999999876410
Q ss_pred cceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 007489 217 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 296 (601)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 296 (601)
T Consensus 569 -------------------------------------------------------------------------------- 568 (707)
T KOG0263|consen 569 -------------------------------------------------------------------------------- 568 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCC
Q 007489 297 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 376 (601)
Q Consensus 297 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 376 (601)
.|| .+.+|..+|.+++|||+|++|++|+.||.|.+||+.+++++..+.+ |
T Consensus 569 ~VR-------------------iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-----------H 618 (707)
T KOG0263|consen 569 SVR-------------------IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-----------H 618 (707)
T ss_pred EEE-------------------EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-----------c
Confidence 122 2356888999999999999999999999999999999999999998 9
Q ss_pred CCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 377 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 377 ~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
.+.|.++.||.||..||+|+.|.+|++||+..
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999854
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-33 Score=225.99 Aligned_cols=281 Identities=16% Similarity=0.170 Sum_probs=228.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.|+++|.++.|+-|| +.+++++|.+|++|+...|.+++++.+|...|..++.+.|+..+++||.|..|.+||+++++.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv- 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV- 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCee-
Confidence 899999999999999 999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+++|...|+.+.|. .+.. .+++|+.|..
T Consensus 94 ----------------~Rr~rgH~aqVNtV~fN---------eesS------------------------Vv~SgsfD~s 124 (307)
T KOG0316|consen 94 ----------------DRRFRGHLAQVNTVRFN---------EESS------------------------VVASGSFDSS 124 (307)
T ss_pred ----------------eeecccccceeeEEEec---------Ccce------------------------EEEeccccce
Confidence 88999999999999997 4443 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
+++||-+.....+ + ++...
T Consensus 125 ~r~wDCRS~s~eP------------------------------------------------------------i-Qilde 143 (307)
T KOG0316|consen 125 VRLWDCRSRSFEP------------------------------------------------------------I-QILDE 143 (307)
T ss_pred eEEEEcccCCCCc------------------------------------------------------------c-chhhh
Confidence 9999987622100 0 01111
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
....|.++.++ +..|+. +.||+++.||++. +... ......+|+++.|++|++..++++.|+++++.|
T Consensus 144 a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~---G~l~-------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK---GTLS-------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred hcCceeEEEec--ccEEEeeccCCcEEEEEeec---ceee-------hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 12456666554 344555 7999999999996 3321 222345899999999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 432 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 432 (601)
-.+|++++.+.++. ....-..++++.....+++|+.||.|++||+........++....-.|++++++| .
T Consensus 212 k~tGklL~sYkGhk---------n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp-~ 281 (307)
T KOG0316|consen 212 KETGKLLKSYKGHK---------NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP-T 281 (307)
T ss_pred cchhHHHHHhcccc---------cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc-C
Confidence 99999999999954 2334456778888889999999999999999999887777654433489999999 6
Q ss_pred CCEEEEEeCCCeEEEEE
Q 007489 433 NNVLIITTSSNQVYVFD 449 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vwd 449 (601)
-..+++++..+ +..|-
T Consensus 282 ~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 282 MDDFITATGHG-DLFWY 297 (307)
T ss_pred ccceeEecCCc-eecee
Confidence 66677766444 45554
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=259.95 Aligned_cols=268 Identities=18% Similarity=0.258 Sum_probs=228.6
Q ss_pred CEEeeecCCcEEEEECCC-CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 1 MLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
+|++|+.|+.|+||++-. +++++++. +|..+|.+++|+++| .++|++.|+.|++||+++|+++.++.. .
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~--------gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~ 299 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFK--------GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-D 299 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhh--------cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-C
Confidence 589999999999999976 99999998 999999999999999 999999999999999999999998874 5
Q ss_pred cceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 79 GDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 79 ~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
..++|+.|.||+ +.+++|+.|+.|+.||+++++. ++.+..|-..|..+.|. ++
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----------------vqeYd~hLg~i~~i~F~---------~~ 353 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----------------VQEYDRHLGAILDITFV---------DE 353 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----------------HHHHHhhhhheeeeEEc---------cC
Confidence 678999999998 7888999999999999999986 77888899999999998 88
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
|+ .+++.+.|+.+++|+....-.+.
T Consensus 354 g~------------------------rFissSDdks~riWe~~~~v~ik------------------------------- 378 (503)
T KOG0282|consen 354 GR------------------------RFISSSDDKSVRIWENRIPVPIK------------------------------- 378 (503)
T ss_pred Cc------------------------eEeeeccCccEEEEEcCCCccch-------------------------------
Confidence 87 99999999999999987522111
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
.+...+.....|+..+|++.+++. +.++.|.+|.+.......+
T Consensus 379 -------------------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk----- 422 (503)
T KOG0282|consen 379 -------------------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK----- 422 (503)
T ss_pred -------------------------------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH-----
Confidence 111122345678899999999999 8999999998764211111
Q ss_pred eecCCcCc--cceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEE
Q 007489 317 KRQLPRKL--QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLA 393 (601)
Q Consensus 317 ~~~~~~~~--~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~la 393 (601)
+..+.+|. +-...+.|||||++|++|+.||.+.+||.++-+++..++. |...+..+.|+|.. ..+|
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-----------h~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-----------HDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-----------CCcceEEEEecCCCcceeE
Confidence 13445553 3457889999999999999999999999999999999998 89999999999964 5789
Q ss_pred EEecCCeEEEEE
Q 007489 394 AVNCFGDVYIFN 405 (601)
Q Consensus 394 s~~~dg~i~iwd 405 (601)
+++.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=252.15 Aligned_cols=266 Identities=15% Similarity=0.202 Sum_probs=221.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccc-cc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~ 78 (601)
.|++|+..|.+.+|+..+-..-.-+ ..|...|.++.|+++| .++||+.+|.|++|+.. ...+..+.. |.
T Consensus 110 RLltgs~SGEFtLWNg~~fnFEtil--------QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~ 180 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTSFNFETIL--------QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA 180 (464)
T ss_pred eeEeecccccEEEecCceeeHHHHh--------hhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh
Confidence 4899999999999996322211122 3899999999999999 99999999999999987 444555555 55
Q ss_pred cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 79 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
..|.+++|+|+...+++++.||+|+|||....+. ...+++|.-+|++++|+ |..
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----------------e~vL~GHgwdVksvdWH---------P~k 234 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----------------ERVLRGHGWDVKSVDWH---------PTK 234 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCch-----------------hheeccCCCCcceeccC---------Ccc
Confidence 9999999999999999999999999999987664 46779999999999998 544
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
. .+++||.|..|++||.++...+..
T Consensus 235 g------------------------LiasgskDnlVKlWDprSg~cl~t------------------------------- 259 (464)
T KOG0284|consen 235 G------------------------LIASGSKDNLVKLWDPRSGSCLAT------------------------------- 259 (464)
T ss_pred c------------------------eeEEccCCceeEeecCCCcchhhh-------------------------------
Confidence 3 999999999999999987432111
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEee
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
...|...|..+.|++++++|++ +.|..+++||++. ...+
T Consensus 260 --------------------------------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---mkEl----- 299 (464)
T KOG0284|consen 260 --------------------------------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---MKEL----- 299 (464)
T ss_pred --------------------------------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH---hHHH-----
Confidence 1134577999999999999999 8999999999985 3333
Q ss_pred ecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 318 RQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
..+.+|...++++.|+| ...+|.+|+.||.|..|.+...+++..+... |...|++++|+|=|.+||+|+
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A----------Hd~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA----------HDGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc----------cccceeeeeccccceeEeecC
Confidence 56778999999999999 5578899999999999998855666655543 899999999999999999999
Q ss_pred cCCeEEEEEc
Q 007489 397 CFGDVYIFNL 406 (601)
Q Consensus 397 ~dg~i~iwd~ 406 (601)
.|.++++|.-
T Consensus 370 nd~t~rfw~r 379 (464)
T KOG0284|consen 370 NDRTVRFWTR 379 (464)
T ss_pred CCcceeeecc
Confidence 9999999974
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=271.28 Aligned_cols=286 Identities=19% Similarity=0.215 Sum_probs=241.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc--hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC-
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE- 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~- 110 (601)
.|...|.++.|+++| .+++++.++.+++|+..+++ ++..+.+|...|.+++|+|+++++++++.|++|++||+...
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 457889999999999 99999999999999998777 77888899999999999999999999999999999999433
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
.. +..+.+|...|.+++|+ |+++ .+++|+.
T Consensus 237 ~~-----------------~~~l~gH~~~v~~~~f~---------p~g~------------------------~i~Sgs~ 266 (456)
T KOG0266|consen 237 RN-----------------LKTLKGHSTYVTSVAFS---------PDGN------------------------LLVSGSD 266 (456)
T ss_pred eE-----------------EEEecCCCCceEEEEec---------CCCC------------------------EEEEecC
Confidence 43 78889999999999998 8886 9999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|++|++||+++. .+...
T Consensus 267 D~tvriWd~~~~---------------------------------------------------------------~~~~~ 283 (456)
T KOG0266|consen 267 DGTVRIWDVRTG---------------------------------------------------------------ECVRK 283 (456)
T ss_pred CCcEEEEeccCC---------------------------------------------------------------eEEEe
Confidence 999999999862 12233
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCcc--ceeEEEEccCCCeEEEEecCCc
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
...|...|++++|++++++|++ +.|+.+++||+.. +... + ...+..+.. +++++.|+|++.++++++.|+.
T Consensus 284 l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~---~~~~--~-~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET---GSKL--C-LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC---Ccee--e-eecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 3456789999999999999999 6799999999986 3311 0 122333332 5899999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCC---CeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCcee
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEP---PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT 424 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 424 (601)
+++||+..+..+..+.++ .. .+.+...++.++++++|+.|+.|++||+.++.....+..+....+.
T Consensus 358 ~~~w~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGH-----------SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS 426 (456)
T ss_pred EEEEEccCCcceeeeccc-----------CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence 999999999999999984 33 4555566889999999999999999999998776666643156889
Q ss_pred EEEecCCCCCEEEEEe--CCCeEEEEEcC
Q 007489 425 AAGFPPQNNNVLIITT--SSNQVYVFDVE 451 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~--~dg~v~vwd~~ 451 (601)
.+.++| ..+++++++ .|+.+++|..+
T Consensus 427 ~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 999999 999999998 78999999764
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.3e-32 Score=286.47 Aligned_cols=305 Identities=14% Similarity=0.189 Sum_probs=237.9
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc----c----hhhhccccc
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG----T----LLQAHSFHK 78 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~----~----~~~~~~~h~ 78 (601)
+|.+++|+..+......++. +....|...|++++|+|+| +||+|+.|+.|+|||.... . +...+. +.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~ 532 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQ---GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SR 532 (793)
T ss_pred hhhhhhhcccceEEEEeecc---ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-cc
Confidence 56788888876665544442 1223699999999999999 8999999999999997532 1 112223 34
Q ss_pred cceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC-
Q 007489 79 GDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP- 156 (601)
Q Consensus 79 ~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~- 156 (601)
..|.+++|++ ++.+|++++.||+|++||+.+++. ...+.+|...|.+++|+ |
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-----------------~~~~~~H~~~V~~l~~~---------p~ 586 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----------------VTEMKEHEKRVWSIDYS---------SA 586 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-----------------EEEecCCCCCEEEEEEc---------CC
Confidence 6899999987 578999999999999999988764 66778999999999997 5
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++. +|++|+.|+.|++||+.+..
T Consensus 587 ~~~------------------------~L~Sgs~Dg~v~iWd~~~~~--------------------------------- 609 (793)
T PLN00181 587 DPT------------------------LLASGSDDGSVKLWSINQGV--------------------------------- 609 (793)
T ss_pred CCC------------------------EEEEEcCCCEEEEEECCCCc---------------------------------
Confidence 443 99999999999999987521
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc-CCCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-NSGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.+..+. +...+.++.|+ ++|.+|++ +.|+.|++||++.. ...+
T Consensus 610 -----------------------------~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~--~~~~-- 654 (793)
T PLN00181 610 -----------------------------SIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP--KLPL-- 654 (793)
T ss_pred -----------------------------EEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--Cccc--
Confidence 111111 12467888884 57888888 68999999999751 1122
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC------ceeeeeccCcccccccCCCCCCCeeEEEEccC
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS------ELLHTFTPCREEHDREIQPSEPPITKMFTSSD 388 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 388 (601)
..+.+|...|.++.|. ++.+|++++.|++|++||+..+ +++.++.+ |...+..++|+|+
T Consensus 655 ---~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-----------h~~~i~~v~~s~~ 719 (793)
T PLN00181 655 ---CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG-----------HTNVKNFVGLSVS 719 (793)
T ss_pred ---eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC-----------CCCCeeEEEEcCC
Confidence 3346788899999997 7889999999999999998642 46677777 8889999999999
Q ss_pred CCEEEEEecCCeEEEEEcCCceEEEEee------------ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 389 GQWLAAVNCFGDVYIFNLEIQRQHWFIS------------RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 389 ~~~las~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
+++||+|+.|+.|++|+........... ..+...|.+++|+| ++..|++|+.||.|+||++
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9999999999999999987654332211 11234699999999 9999999999999999996
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=247.65 Aligned_cols=264 Identities=13% Similarity=0.178 Sum_probs=232.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+++++-.+|.|.|||.++...++.+. -.+.+|.+..|.+-. .+++|+.|..|+|++..+++.+..|..|..
T Consensus 27 w~la~LynG~V~IWnyetqtmVksfe--------V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D 98 (794)
T KOG0276|consen 27 WILAALYNGDVQIWNYETQTMVKSFE--------VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD 98 (794)
T ss_pred eEEEeeecCeeEEEecccceeeeeee--------ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecccc
Confidence 46778889999999999999999998 467889999999877 899999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.|++.+|...+++|++.|-+|++|+.+.+ |.+.+.+.+|++.|.+++|. |.+.
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~----------------wa~~qtfeGH~HyVMqv~fn---------PkD~ 153 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----------------WACEQTFEGHEHYVMQVAFN---------PKDP 153 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCc----------------eeeeeEEcCcceEEEEEEec---------CCCc
Confidence 9999999999999999999999999999864 88899999999999999998 6654
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
+.++|++.|++|++|.+....
T Consensus 154 -----------------------ntFaS~sLDrTVKVWslgs~~------------------------------------ 174 (794)
T KOG0276|consen 154 -----------------------NTFASASLDRTVKVWSLGSPH------------------------------------ 174 (794)
T ss_pred -----------------------cceeeeeccccEEEEEcCCCC------------------------------------
Confidence 599999999999999987511
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
...++. +|+..|+|+.+-+-| -+|++ ++|..+++||.++ ..++
T Consensus 175 --------------------------~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---k~CV---- 220 (794)
T KOG0276|consen 175 --------------------------PNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---KSCV---- 220 (794)
T ss_pred --------------------------Cceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch---HHHH----
Confidence 111222 567889999998866 57888 6899999999997 5565
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
..+.+|...|..+.|+|.-..+++|++||+++||+..+.++..++.- .-..+.+++-.+.+..++.|.
T Consensus 221 -~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-----------gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 221 -QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-----------GLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred -HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-----------CCceEEEEeecCCCCeEEEec
Confidence 78899999999999999999999999999999999998888877776 567899999999888898888
Q ss_pred cCCeEE
Q 007489 397 CFGDVY 402 (601)
Q Consensus 397 ~dg~i~ 402 (601)
+.|.|.
T Consensus 289 Deg~i~ 294 (794)
T KOG0276|consen 289 DEGSVT 294 (794)
T ss_pred cCCcEE
Confidence 877654
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=246.30 Aligned_cols=263 Identities=18% Similarity=0.248 Sum_probs=221.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
.+++|..|.+|+|||..+..+++.+. ||++.|.|+.|.. ..|++|++|.+|+|||+++|+++.++-+|...
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~--------GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILT--------GHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhh--------cCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcce
Confidence 36899999999999999999999998 9999999999852 28999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
|..+.|+ +.++++++.|.++.+||+..... -.+...+.+|...|+.+.|. .+
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~--------------it~rrVLvGHrAaVNvVdfd-----------~k- 331 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTD--------------ITLRRVLVGHRAAVNVVDFD-----------DK- 331 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchH--------------HHHHHHHhhhhhheeeeccc-----------cc-
Confidence 9999997 67999999999999999987542 11245678999999999974 33
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
++++++.|.+|++|++.+..
T Consensus 332 -----------------------yIVsASgDRTikvW~~st~e------------------------------------- 351 (499)
T KOG0281|consen 332 -----------------------YIVSASGDRTIKVWSTSTCE------------------------------------- 351 (499)
T ss_pred -----------------------eEEEecCCceEEEEecccee-------------------------------------
Confidence 99999999999999988732
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeec
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
..++..+|...|.|+.+ .|+++++ ++|.+|++|++.. +.++ ..
T Consensus 352 --------------------------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~---G~cL-----Rv 395 (499)
T KOG0281|consen 352 --------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---GACL-----RV 395 (499)
T ss_pred --------------------------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc---cHHH-----HH
Confidence 11222345566777664 5788888 6999999999987 7776 77
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce---------eeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL---------LHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
+.+|..-|.++.| |.+.+++|..||+|+|||+..+.. +.++.. |.+.|..+.| |..
T Consensus 396 LeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-----------hsgRVFrLQF--D~f 460 (499)
T KOG0281|consen 396 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-----------HSGRVFRLQF--DEF 460 (499)
T ss_pred HhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhh-----------ccceeEEEee--cce
Confidence 8999999999999 577899999999999999976542 222333 8899999999 888
Q ss_pred EEEEEecCCeEEEEEcCCceE
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~ 411 (601)
.+++++.|.+|.|||+..+..
T Consensus 461 qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEeccCCCeEEEEEcCCCCc
Confidence 999999999999999877654
No 46
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=255.18 Aligned_cols=402 Identities=15% Similarity=0.181 Sum_probs=304.5
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCC-ceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhcc-cc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP-ELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS-FH 77 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~-~h 77 (601)
+|.|..+|+|.|+|+..++.+.+++ | .+.|++++|..|| .+++|+..|.+.+||++..+++..+. .|
T Consensus 217 VaiG~~~G~ViifNlK~dkil~sFk---------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah 287 (910)
T KOG1539|consen 217 VAIGLENGTVIIFNLKFDKILMSFK---------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH 287 (910)
T ss_pred EEEeccCceEEEEEcccCcEEEEEE---------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence 7899999999999999999999998 5 4999999999999 78999999999999999877776665 79
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
.+.|..+.|.|....+++++.|+.+++|-.+++.-.++ .++...+|+.+..++.|. +..
T Consensus 288 ~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR-------------~LR~R~GHs~Pp~~irfy--------~~~ 346 (910)
T KOG1539|consen 288 YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR-------------LLRSRGGHSAPPSCIRFY--------GSQ 346 (910)
T ss_pred cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch-------------heeeccCCCCCchheeee--------ccC
Confidence 99999999999999999999999999997776543222 266778999999999986 122
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCC----Cc------cCCC-CCccceeeeeccc
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP----HE------ICPA-PQRVPIHLVHNTI 226 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~----~~------~~~~-~~~~~~~~~~~~~ 226 (601)
+ ..+.+++.|++++.+++.....-+. +. .... +.......+..++
T Consensus 347 g------------------------~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 347 G------------------------HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred c------------------------EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 3 4999999999999988754221100 00 0000 1111112333333
Q ss_pred cCCC-----eEEEEEe--CCeeEEeeccccCCcccCCCCCCCCCcceEEEE--EecCCCCeEEEEEcCCCCEEEE-EcCC
Q 007489 227 FSHT-----SLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQV--KSKASRKIICSTISNSGMLFAY-SDHV 296 (601)
Q Consensus 227 ~~~~-----~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~-~~~~ 296 (601)
+... ..+++.. ....+.|++....... ..... ..+.+..++++++++.|++... .+.|
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~------------~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR------------HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCccccc------------EEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 3321 1233332 2567777776544211 11100 0113478999999999999988 4889
Q ss_pred ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCC
Q 007489 297 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 376 (601)
Q Consensus 297 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 376 (601)
.|.+|+++. +... -.-..-+.|..+|+.++...-++.+++++.+|.+.+||.....++..+. -
T Consensus 471 ~Id~fNmQS---Gi~r--~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~------------l 533 (910)
T KOG1539|consen 471 TIDRFNMQS---GIHR--KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR------------L 533 (910)
T ss_pred eEEEEEccc---Ceee--cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec------------c
Confidence 999999986 3321 0001236788999999999888999999999999999999888877777 4
Q ss_pred CCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 007489 377 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 456 (601)
Q Consensus 377 ~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 456 (601)
...++++..+.....+|.+..|-.|+++|..+.+..+.+.. |+..|++++||| ||++|++++.|++|++||+.++.+.
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCC-CCcEEEEeecCCcEEEEeccCccee
Confidence 67789999999999999999999999999999988777764 678999999999 9999999999999999999999863
Q ss_pred cchhcccCCcCcccccCCCcEEEEEeCCCCC--------CCEEEEEcCceEE
Q 007489 457 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS--------SSSVIIYSARAMC 500 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~--------~~~~~~~~~~~~~ 500 (601)
+ .+ ....+++.+.|+|++. .+.|++|....++
T Consensus 612 D-----------~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 612 D-----------GL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred e-----------eE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHh
Confidence 3 12 2357899999999822 3567777554443
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=229.94 Aligned_cols=272 Identities=17% Similarity=0.197 Sum_probs=222.0
Q ss_pred CEEeeecCCcEEEEECC-CCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 1 MLYSGSSDGYIRSWDAK-LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
+||||+.|..|.+|++. ..+....++ +|.+.|..+.|.+|+ .|++++.|.+|+.||+++|+.++.+++|.
T Consensus 61 ~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 61 CFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT 132 (338)
T ss_pred eEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc
Confidence 48999999999999964 334455555 999999999999999 99999999999999999999999999999
Q ss_pred cceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 79 GDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 79 ~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
.-|+++.-+.-|. ++.|++.|+++++||++.... .+ .....-.+.++.|. .+
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----------------~~-t~~~kyqltAv~f~---------d~ 185 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----------------IK-TFENKYQLTAVGFK---------DT 185 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccch-----------------hh-ccccceeEEEEEec---------cc
Confidence 9999999665565 455889999999999998664 22 22335578889986 33
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
+ ..+++|+-|+.|++||++...
T Consensus 186 s------------------------~qv~sggIdn~ikvWd~r~~d---------------------------------- 207 (338)
T KOG0265|consen 186 S------------------------DQVISGGIDNDIKVWDLRKND---------------------------------- 207 (338)
T ss_pred c------------------------cceeeccccCceeeeccccCc----------------------------------
Confidence 3 389999999999999997521
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
...+..+|...|+.+..+++|.++.+ +.|.++++||++.-........+.
T Consensus 208 -----------------------------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 208 -----------------------------GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred -----------------------------ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence 12233456788999999999999999 899999999998744444432222
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
.............++|+|+++.+.+|+.|..+++||......+..+.+ |.+.|+++.|+|...+|.+++
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-----------h~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-----------HYGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-----------cceeEEEeeecCCCcEEEEec
Confidence 222222233456789999999999999999999999988889999998 999999999999999999999
Q ss_pred cCCeEEEEE
Q 007489 397 CFGDVYIFN 405 (601)
Q Consensus 397 ~dg~i~iwd 405 (601)
.|.+|++=.
T Consensus 328 sdk~i~lge 336 (338)
T KOG0265|consen 328 SDKTIYLGE 336 (338)
T ss_pred cCceeEeec
Confidence 999998643
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-30 Score=223.60 Aligned_cols=291 Identities=17% Similarity=0.220 Sum_probs=236.3
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee--CCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS--DGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~i~vw~~~~~~ 111 (601)
.-.+.|.++.|+++| .+++++.|-.++|||..+|+.+.++..+.-.|..++|....+.++.++. |.+|+..++.+.+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 456789999999999 8889999999999999999999999988889999999887777776665 8999999999988
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
. ++.+.+|...|.+++.+ |-+. .++|++.|
T Consensus 92 y-----------------lRYF~GH~~~V~sL~~s---------P~~d------------------------~FlS~S~D 121 (311)
T KOG1446|consen 92 Y-----------------LRYFPGHKKRVNSLSVS---------PKDD------------------------TFLSSSLD 121 (311)
T ss_pred e-----------------EEEcCCCCceEEEEEec---------CCCC------------------------eEEecccC
Confidence 5 89999999999999998 7665 99999999
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
++|++||++..+. .|.+ .
T Consensus 122 ~tvrLWDlR~~~c-------------------------qg~l-------------------------------------~ 139 (311)
T KOG1446|consen 122 KTVRLWDLRVKKC-------------------------QGLL-------------------------------------N 139 (311)
T ss_pred CeEEeeEecCCCC-------------------------ceEE-------------------------------------e
Confidence 9999999985220 0110 0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcC-CccEEEEeecCCCCcceEEEeeecCC-cCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 272 SKASRKIICSTISNSGMLFAYSDH-VKPSLFELKKGKVGQGEWIINKRQLP-RKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
...-..+||.|.|-++|++.. ..|+|||++.-+++... ...+. ......+.|.|||||++|+.++..+.++
T Consensus 140 ---~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~----tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 140 ---LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT----TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred ---cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce----eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 122346789999999999644 49999999975443321 12222 4456789999999999999999999999
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
+.|.-+|..+.+|..... ...--...+|+||++++.+|+.||+|++|++++++....+...+..++.++.|+
T Consensus 213 ~lDAf~G~~~~tfs~~~~--------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPN--------AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred EEEccCCcEeeeEeeccC--------CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 999999999999987432 111225788999999999999999999999999999888887777899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 430 PQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
| . +...++.+..+.+|=....++
T Consensus 285 P-~--~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 285 P-R--YAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred C-c--eeeeeecCceEEEEecccccc
Confidence 9 4 445555567899998876654
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.9e-32 Score=234.66 Aligned_cols=282 Identities=18% Similarity=0.201 Sum_probs=226.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEe-eCC---eEEEEcCCCcEEEeeCCccchh----h
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL-RCG---TLVSADSTGSVQFWDSRHGTLL----Q 72 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~g---~l~s~~~dg~i~vwd~~~~~~~----~ 72 (601)
+|+|||.||.+||||. .|++++.+. ||.++|.+++|. ++. .+++++.|.++++|.++.++.. .
T Consensus 117 ~IltgsYDg~~riWd~-~Gk~~~~~~--------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDL-KGKSIKTIV--------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred eEEEeecCCeeEEEec-CCceEEEEe--------cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 5899999999999996 599999998 999999988876 333 5999999999999999877543 4
Q ss_pred hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCC--------CCccccceeEEecCccccccceeEEE
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL--------SSSEVIKKWIYVGSVRAHTHDVRALT 144 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~l~ 144 (601)
..+||.+.|-++...++|..+++|+.|.+|.+|+.........+.. ...+....-.++..+.+|+..|.++.
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 4559999999999999999999999999999999443322111111 11122233445667899999999999
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeec
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN 224 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (601)
|+ + .. .+++++.|.+|+.||+.+....
T Consensus 268 w~---------d-~~------------------------v~yS~SwDHTIk~WDletg~~~------------------- 294 (423)
T KOG0313|consen 268 WS---------D-AT------------------------VIYSVSWDHTIKVWDLETGGLK------------------- 294 (423)
T ss_pred Ec---------C-CC------------------------ceEeecccceEEEEEeecccce-------------------
Confidence 96 3 32 8999999999999999873311
Q ss_pred cccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEe
Q 007489 225 TIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFEL 303 (601)
Q Consensus 225 ~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~ 303 (601)
.++. ....+.|+..+|..++|++ +.|..+++||.
T Consensus 295 -------------------------------------------~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 295 -------------------------------------------STLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred -------------------------------------------eeee--cCcceeEeecccccceeeecCCCCceeecCC
Confidence 1111 1366889999999999999 79999999999
Q ss_pred ecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCee
Q 007489 304 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 381 (601)
+.++. . +....+.+|.+.|.++.|+|.. ..|++++.|+++++||+++.+ ++..+.+ |...|.
T Consensus 330 R~~~g-s----~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-----------h~DKvl 393 (423)
T KOG0313|consen 330 RTGDG-S----VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-----------HNDKVL 393 (423)
T ss_pred CCCCC-c----eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-----------CCceEE
Confidence 98432 2 2347889999999999999965 458999999999999998877 8899988 999999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEc
Q 007489 382 KMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 382 ~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
++.|. ++.+|++|+.|.+|+|+.-
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEecc-CCceEEeccCcceEEEecc
Confidence 99994 4568999999999999864
No 50
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=6.2e-32 Score=267.05 Aligned_cols=308 Identities=19% Similarity=0.275 Sum_probs=251.5
Q ss_pred CCceEEEEEEEeeCC-eEEEEc--CCCcEEEeeCCc------------cchhhhccccccceEEEEEeCCCCEEEEEeeC
Q 007489 35 GPELCIWSLLSLRCG-TLVSAD--STGSVQFWDSRH------------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~--~dg~i~vwd~~~------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 99 (601)
.++..|.++..+||| .+++|+ .||.++||+.+. .+++.+...|.+.|+|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 457789999999999 999999 899999998742 23445667799999999999999999999999
Q ss_pred CeEEEEEeccCcC-CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 100 GQVILYKASCESI-GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 100 g~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
+.|.||....... ......+.....+.|.....+++|..+|..++|+ |++.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws---------p~~~------------------- 142 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS---------PDDS------------------- 142 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC---------CCcc-------------------
Confidence 9999999885111 1111224566778999999999999999999999 8887
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
+|++++.|.+|.+|+..++.
T Consensus 143 -----~lvS~s~DnsViiwn~~tF~------------------------------------------------------- 162 (942)
T KOG0973|consen 143 -----LLVSVSLDNSVIIWNAKTFE------------------------------------------------------- 162 (942)
T ss_pred -----EEEEecccceEEEEccccce-------------------------------------------------------
Confidence 99999999999999988742
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecC-----CcCccceeEEEE
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQL-----PRKLQFAHSMIF 332 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~ 332 (601)
..+....|+..|..+.|.|-|+|+|+ ++|+++++|+... |.+.+... ......+..+.|
T Consensus 163 --------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-------w~i~k~It~pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 163 --------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-------WGIEKSITKPFEESPLTTFFLRLSW 227 (942)
T ss_pred --------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-------ceeeEeeccchhhCCCcceeeeccc
Confidence 22333456788999999999999999 9999999999664 33332211 112346788999
Q ss_pred ccCCCeEEEEec----CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-----CC------------E
Q 007489 333 SYDSSQLIIAGH----DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQ------------W 391 (601)
Q Consensus 333 s~d~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----~~------------~ 391 (601)
||||.+|++... -.++.|.+..+.+.-..|-+ |..++.+++|+|. .+ .
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-----------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-----------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCceeeeeeec-----------CCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 999999998754 24688999888888888888 8999999999972 11 5
Q ss_pred EEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 007489 392 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE 457 (601)
Q Consensus 392 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 457 (601)
+|+|+.|++|.||.....++...+.......|..|+|+| ||..|++++.||+|.++.++.+++..
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhCc
Confidence 789999999999999888887666666667999999999 99999999999999999998776533
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=268.25 Aligned_cols=270 Identities=19% Similarity=0.289 Sum_probs=227.5
Q ss_pred CEEeeecCCcEEEEECCCCc--eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeC-Cccchhhhccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS-RHGTLLQAHSF 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~-~~~~~~~~~~~ 76 (601)
+|++++.|+.|++|+..+++ ..+.+. +|...|.+++|+|++ .+++++.|++|+|||+ ..+..++++.+
T Consensus 173 ~l~~~~~~~~i~~~~~~~~~~~~~~~l~--------~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 173 ALAAASSDGLIRIWKLEGIKSNLLRELS--------GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred eEEEccCCCcEEEeecccccchhhcccc--------ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 37899999999999998777 566664 899999999999999 9999999999999999 55689999999
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
|...|++++|+|+++.+++|+.|++|++||+.++++ ...+.+|...|.+++|. +
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-----------------~~~l~~hs~~is~~~f~---------~ 298 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-----------------VRKLKGHSDGISGLAFS---------P 298 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-----------------EEeeeccCCceEEEEEC---------C
Confidence 999999999999999999999999999999999875 88999999999999998 8
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++. .|++++.|+.|++||+.+.... .
T Consensus 299 d~~------------------------~l~s~s~d~~i~vwd~~~~~~~---~--------------------------- 324 (456)
T KOG0266|consen 299 DGN------------------------LLVSASYDGTIRVWDLETGSKL---C--------------------------- 324 (456)
T ss_pred CCC------------------------EEEEcCCCccEEEEECCCCcee---e---------------------------
Confidence 886 9999999999999999873311 0
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCC-CeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR-KIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
+..+...... .+.++.|+|++.++++ ..|+.+++|++.. +...
T Consensus 325 ------------------------------~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~---~~~~-- 369 (456)
T KOG0266|consen 325 ------------------------------LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS---GKSV-- 369 (456)
T ss_pred ------------------------------eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---Ccce--
Confidence 0000001112 5899999999999999 5778999999986 3332
Q ss_pred EeeecCCcCcc---ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCC-CCCeeEEEEccCCC
Q 007489 315 INKRQLPRKLQ---FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS-EPPITKMFTSSDGQ 390 (601)
Q Consensus 315 ~~~~~~~~~~~---~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spd~~ 390 (601)
....+|.. .+.+..+++++.++++|+.|+.|++||+.++..+..+.+ | ...+..+.++|..+
T Consensus 370 ---~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-----------h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 370 ---GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-----------HSKAAVSDLSSHPTEN 435 (456)
T ss_pred ---eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-----------CCCCceeccccCCCcC
Confidence 22333333 344556678999999999999999999999988888888 7 88899999999999
Q ss_pred EEEEEe--cCCeEEEEEcC
Q 007489 391 WLAAVN--CFGDVYIFNLE 407 (601)
Q Consensus 391 ~las~~--~dg~i~iwd~~ 407 (601)
++++++ .|+.+++|..+
T Consensus 436 ~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 436 LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeeecCcCCCceEEEecCC
Confidence 999998 78999999754
No 52
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.3e-33 Score=228.56 Aligned_cols=269 Identities=18% Similarity=0.247 Sum_probs=233.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|+++|.||.=.+-+-++|.-+-++. +|.+.||+.....+- +-++++.|-+-+|||.-+|..+.+|. |..
T Consensus 31 flisa~kd~~pmlr~g~tgdwigtfe--------ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkh 101 (334)
T KOG0278|consen 31 FLISASKDGKPMLRNGDTGDWIGTFE--------GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKH 101 (334)
T ss_pred EEEEeccCCCchhccCCCCCcEEeee--------ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhh
Confidence 58999999999999999999999999 999999999999888 78899999999999999999999997 899
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
-|.+++|+.|.++|++|+.+..++|||++..... ...+.+|+..|+.+.|. ...+
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap----------------p~E~~ghtg~Ir~v~wc---------~eD~ 156 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP----------------PKEISGHTGGIRTVLWC---------HEDK 156 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCC----------------chhhcCCCCcceeEEEe---------ccCc
Confidence 9999999999999999999999999999887642 56789999999999998 5554
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.++|...|++|++||.++..
T Consensus 157 ------------------------~iLSSadd~tVRLWD~rTgt------------------------------------ 176 (334)
T KOG0278|consen 157 ------------------------CILSSADDKTVRLWDHRTGT------------------------------------ 176 (334)
T ss_pred ------------------------eEEeeccCCceEEEEeccCc------------------------------------
Confidence 88999999999999998733
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
.+..+..+ .+|+++.++++|++|.++..+.|..||... -.. +....
T Consensus 177 --------------------------~v~sL~~~--s~VtSlEvs~dG~ilTia~gssV~Fwdaks---f~~---lKs~k 222 (334)
T KOG0278|consen 177 --------------------------EVQSLEFN--SPVTSLEVSQDGRILTIAYGSSVKFWDAKS---FGL---LKSYK 222 (334)
T ss_pred --------------------------EEEEEecC--CCCcceeeccCCCEEEEecCceeEEecccc---ccc---eeecc
Confidence 22233322 678999999999999999999999999875 111 22233
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeee-ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF-TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 398 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d 398 (601)
++. .|.+...+|+...+++|++|..++.||..+++.+..+ ++ |.++|.|+.|||||...|+|+.|
T Consensus 223 ~P~---nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-----------h~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 223 MPC---NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-----------HFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred Ccc---ccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-----------CCCceEEEEECCCCceeeccCCC
Confidence 333 6788899999999999999999999999999988876 55 89999999999999999999999
Q ss_pred CeEEEEEcCCceE
Q 007489 399 GDVYIFNLEIQRQ 411 (601)
Q Consensus 399 g~i~iwd~~~~~~ 411 (601)
|+|+||....++.
T Consensus 289 GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 289 GTIRLWQTTPGKT 301 (334)
T ss_pred ceEEEEEecCCCc
Confidence 9999999866554
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-30 Score=251.42 Aligned_cols=293 Identities=14% Similarity=0.194 Sum_probs=247.2
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.....|-.++|+|.. .++++-..|.|++||.+-+.++..|..|.++|..++|+|++.+++|||.|-.|++|+..+.++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc- 85 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC- 85 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-
Confidence 467789999999999 999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
+.++.+|-+.|+.+.|++.+ +.++|++.|.+
T Consensus 86 ----------------lftL~GHlDYVRt~~FHhey---------------------------------PWIlSASDDQT 116 (1202)
T KOG0292|consen 86 ----------------LFTLLGHLDYVRTVFFHHEY---------------------------------PWILSASDDQT 116 (1202)
T ss_pred ----------------hhhhccccceeEEeeccCCC---------------------------------ceEEEccCCCe
Confidence 88999999999999998333 39999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++|+..+. ....+..+
T Consensus 117 IrIWNwqsr---------------------------------------------------------------~~iavltG 133 (1202)
T KOG0292|consen 117 IRIWNWQSR---------------------------------------------------------------KCIAVLTG 133 (1202)
T ss_pred EEEEeccCC---------------------------------------------------------------ceEEEEec
Confidence 999998752 22334456
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC-----C------------cceE----EEeeecCCcCccceeEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV-----G------------QGEW----IINKRQLPRKLQFAHSMI 331 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~-----~------------~~~~----~~~~~~~~~~~~~v~~i~ 331 (601)
|...|.|..|+|...++++ +-|.+||+||+..-.+ + ..++ -+.+..+.+|...|+-++
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 6788999999998888888 7899999999864110 1 0111 123456788999999999
Q ss_pred EccCCCeEEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc
Q 007489 332 FSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 332 ~s~d~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~ 409 (601)
|+|.-..+++|+.|..|++|.+..-+ .+.+..+ |.+.|+++-|+|...++++.+.|+.|+|||+...
T Consensus 214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg-----------H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG-----------HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ecCCcceEEecCCcceeeEEEeccccceeehhhhc-----------ccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 99999999999999999999986443 3445555 9999999999999999999999999999999999
Q ss_pred eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 410 RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 410 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
+...++..-+ ...+.++-+| ..+++ +++.|+-+.||.++...
T Consensus 283 t~v~tfrren-dRFW~laahP-~lNLf-AAgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 283 TSVQTFRREN-DRFWILAAHP-ELNLF-AAGHDSGMIVFKLERER 324 (1202)
T ss_pred cceeeeeccC-CeEEEEEecC-Cccee-eeecCCceEEEEEcccC
Confidence 8887877655 5899999999 88755 55566668899998654
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.2e-31 Score=232.22 Aligned_cols=306 Identities=13% Similarity=0.165 Sum_probs=233.4
Q ss_pred CCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCC---CEEEEEeeCCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH---NRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~i~vw~~~~~~ 111 (601)
-|.++|.+|... .+.|++|++||.+++||.. |+.+..+.+|.++|.+++|.-.. ..|++++.|.++++|..+.+.
T Consensus 103 ~hdDWVSsv~~~-~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA-SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc-CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 589999999877 4499999999999999988 99999999999999988885533 359999999999999998876
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
.... .....++|...|.++... +++. .+++|+.|
T Consensus 181 ~~~~-------------~~~~~~GHk~~V~sVsv~---------~sgt------------------------r~~SgS~D 214 (423)
T KOG0313|consen 181 NKVK-------------ALKVCRGHKRSVDSVSVD---------SSGT------------------------RFCSGSWD 214 (423)
T ss_pred hhhh-------------HHhHhcccccceeEEEec---------CCCC------------------------eEEeeccc
Confidence 4211 134446999999999987 7776 99999999
Q ss_pred CeEEEEeccccC--CcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 192 TKLFAYCANEFT--KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 192 ~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
..|.+|+...-. .+..... + +.+. . -.......+....
T Consensus 215 ~~lkiWs~~~~~~~~~E~~s~-----~------------rrk~-----------------~------~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 215 TMLKIWSVETDEEDELESSSN-----R------------RRKK-----------------Q------KREKEGGTRTPLV 254 (423)
T ss_pred ceeeecccCCCccccccccch-----h------------hhhh-----------------h------hhhhcccccCceE
Confidence 999999933211 1110000 0 0000 0 0000011112233
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 270 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
...+|...|.++.|++.+..+.++.|.+|+.||+.. +... ..+. ....++++.++|..++|++|+.|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDlet---g~~~-----~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLET---GGLK-----STLT-TNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcCCCceEeecccceEEEEEeec---ccce-----eeee-cCcceeEeecccccceeeecCCCCcee
Confidence 445778999999999955555558999999999997 3332 1111 234789999999999999999999999
Q ss_pred EEEcCCCc---eeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCCce-EEEEeeccCCCcee
Q 007489 350 VVDVSSSE---LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQR-QHWFISRLEGASVT 424 (601)
Q Consensus 350 vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~ 424 (601)
+||.+++. ..++|.+ |++.|.++.|+|... .|++|+.|+++++||+.+.+ ++..+.. |...|.
T Consensus 326 l~DPR~~~gs~v~~s~~g-----------H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~DKvl 393 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIG-----------HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HNDKVL 393 (423)
T ss_pred ecCCCCCCCceeEEeeec-----------chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CCceEE
Confidence 99987664 4567777 999999999999665 67899999999999999887 6666665 567999
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 425 AAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
++.|+. +..+++|+.|++|+|+.-.
T Consensus 394 ~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccC--CceEEeccCcceEEEeccc
Confidence 999984 7799999999999998643
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-32 Score=238.97 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=216.2
Q ss_pred CEEeeecCCcEEEEECCCCc---eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc-
Q 007489 1 MLYSGSSDGYIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS- 75 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~- 75 (601)
+||||+.|.+..||++.... ..+++. +|..+|..+.||||. +|++++.|-.+.+||+.+|.+...+.
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlv--------gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLV--------GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeee--------cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 58999999999999986443 356666 899999999999999 99999999999999999999887776
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
+|...+.+++|.|||..+++|+.|+++..||++.... ..|.-.. ...|.+++++
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~------------~~W~gvr-----~~~v~dlait--------- 363 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL------------GNWEGVR-----DPKVHDLAIT--------- 363 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh------------hcccccc-----cceeEEEEEc---------
Confidence 4568999999999999999999999999999998763 2333222 3568899998
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
+||+ .+++.+.|..+++++.++.....
T Consensus 364 ~Dgk------------------------~vl~v~~d~~i~l~~~e~~~dr~----------------------------- 390 (519)
T KOG0293|consen 364 YDGK------------------------YVLLVTVDKKIRLYNREARVDRG----------------------------- 390 (519)
T ss_pred CCCc------------------------EEEEEecccceeeechhhhhhhc-----------------------------
Confidence 9998 88888899999999877521000
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
....+..|++.++|.|++++.+ -.+..+++||+.. ...+
T Consensus 391 -----------------------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e---~~lv-- 430 (519)
T KOG0293|consen 391 -----------------------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE---NKLV-- 430 (519)
T ss_pred -----------------------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch---hhHH--
Confidence 0112477999999999999999 5899999999984 2221
Q ss_pred EeeecCCcCccc--eeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CC
Q 007489 315 INKRQLPRKLQF--AHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQ 390 (601)
Q Consensus 315 ~~~~~~~~~~~~--v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~ 390 (601)
....+|... +-.-+|-- +..++++|++|+.|+||+..+++++.++.+ |...|++++|+|. -.
T Consensus 431 ---~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-----------Hs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 431 ---RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-----------HSKTVNCVSWNPADPE 496 (519)
T ss_pred ---HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-----------CcceeeEEecCCCCHH
Confidence 334444432 22234443 558999999999999999999999999999 9999999999995 45
Q ss_pred EEEEEecCCeEEEEEcCC
Q 007489 391 WLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~ 408 (601)
++|++++||+|+||-...
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 889999999999998654
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=216.74 Aligned_cols=262 Identities=15% Similarity=0.165 Sum_probs=216.0
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+.+|++.|.+|++|++..|.++++.. +|...|..++.+.|+ .+++++.|..|.+||+.+|+.++.+.+|.+
T Consensus 31 Y~ltcGsdrtvrLWNp~rg~liktYs--------ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a 102 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLRGALIKTYS--------GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA 102 (307)
T ss_pred EEEEcCCCceEEeecccccceeeeec--------CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc
Confidence 35789999999999999999999999 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|+.++|+.+...+++|+.|.++++||.+.... .+++.+......|.++.++ +
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---------------ePiQildea~D~V~Si~v~-----------~- 155 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---------------EPIQILDEAKDGVSSIDVA-----------E- 155 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEcccCCC---------------CccchhhhhcCceeEEEec-----------c-
Confidence 999999999999999999999999999988653 2366777778889998874 1
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
..++.|+.||+++.||++........
T Consensus 156 -----------------------heIvaGS~DGtvRtydiR~G~l~sDy------------------------------- 181 (307)
T KOG0316|consen 156 -----------------------HEIVAGSVDGTVRTYDIRKGTLSSDY------------------------------- 181 (307)
T ss_pred -----------------------cEEEeeccCCcEEEEEeecceeehhh-------------------------------
Confidence 38999999999999999863211110
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
-..+|+|++|++|++.... +-++++++.|-.+ +..+ .
T Consensus 182 ----------------------------------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t---GklL-----~ 219 (307)
T KOG0316|consen 182 ----------------------------------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKET---GKLL-----K 219 (307)
T ss_pred ----------------------------------cCCcceeEEecCCCCEEEEeeccceeeecccch---hHHH-----H
Confidence 0267999999999998776 7899999999876 4443 4
Q ss_pred cCCcCccce--eEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCC-eeEEEEccCCCEEEEE
Q 007489 319 QLPRKLQFA--HSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP-ITKMFTSSDGQWLAAV 395 (601)
Q Consensus 319 ~~~~~~~~v--~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~spd~~~las~ 395 (601)
...+|.+.- ...+++.....+++|++||.|++||+.....+..+.. +... |+.+.++|.-.-++++
T Consensus 220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-----------~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-----------VSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-----------CCceeEEeeecccCccceeEe
Confidence 455555432 3446667777899999999999999998888888886 5555 8999999987766666
Q ss_pred ecCCeEEEEE
Q 007489 396 NCFGDVYIFN 405 (601)
Q Consensus 396 ~~dg~i~iwd 405 (601)
...+ +..|-
T Consensus 289 ~~~~-~~~~~ 297 (307)
T KOG0316|consen 289 TGHG-DLFWY 297 (307)
T ss_pred cCCc-eecee
Confidence 5443 55553
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.4e-31 Score=217.20 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=222.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhh--ccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA--HSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~--~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
+|...|.+|+|+.+| +|++|+.|+++.+|++...+.... ..+|.+.|-.++|+| ....+++++.|.+|++||.+.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 899999999999999 999999999999999987766544 458999999999998 5678999999999999999998
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
++ .......... ..+.|+ |+|+ +++.++.
T Consensus 98 k~-----------------~~~i~~~~en-i~i~ws---------p~g~------------------------~~~~~~k 126 (313)
T KOG1407|consen 98 KC-----------------TARIETKGEN-INITWS---------PDGE------------------------YIAVGNK 126 (313)
T ss_pred cE-----------------EEEeeccCcc-eEEEEc---------CCCC------------------------EEEEecC
Confidence 75 3333332333 345666 8887 9999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|..|.+.|.++.+.....+
T Consensus 127 dD~it~id~r~~~~~~~~~------------------------------------------------------------- 145 (313)
T KOG1407|consen 127 DDRITFIDARTYKIVNEEQ------------------------------------------------------------- 145 (313)
T ss_pred cccEEEEEecccceeehhc-------------------------------------------------------------
Confidence 9999999988744222211
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
....+..++|+.++.++.. ...|.|.|..... -+.+ ..+..|.....||.|+|+|++||+|+.|..+.
T Consensus 146 ---~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---Lkpv-----~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 146 ---FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS---LKPV-----QSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred ---ccceeeeeeecCCCCEEEEecCCceEEEEeccc---cccc-----cccccCCcceEEEEECCCCceEeeccccceee
Confidence 0134566677766665554 6778999887764 2222 56788889999999999999999999999999
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
+||++..-+++.|.. +.-+|..+.||.||++||+|+.|..|-|=++++|...+.++. .++-..++|+
T Consensus 215 LWD~~ELiC~R~isR-----------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWH 281 (313)
T KOG1407|consen 215 LWDVDELICERCISR-----------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWH 281 (313)
T ss_pred ccChhHhhhheeecc-----------ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEec
Confidence 999998888899987 889999999999999999999999999999999999888773 4688999999
Q ss_pred CCCCCEEEEEeCC
Q 007489 430 PQNNNVLIITTSS 442 (601)
Q Consensus 430 p~~~~~l~~~~~d 442 (601)
| ...+||.++.|
T Consensus 282 P-k~~LLAyA~dd 293 (313)
T KOG1407|consen 282 P-KRPLLAYACDD 293 (313)
T ss_pred C-CCceeeEEecC
Confidence 9 99999988765
No 58
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.6e-30 Score=240.85 Aligned_cols=411 Identities=14% Similarity=0.142 Sum_probs=278.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEE-EcCCCcEEEeeCCccc----------
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVS-ADSTGSVQFWDSRHGT---------- 69 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s-~~~dg~i~vwd~~~~~---------- 69 (601)
++++|+.||.|++|.++....++....+ +|...+.|+ ...-.+.+ .+.|+.+.+||.+..+
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~------g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~ 142 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQ------GHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFE 142 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeec------CcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehh
Confidence 4799999999999999854444433321 555444444 32222322 3678888888873222
Q ss_pred ----------------------------------------hhhhccccccceEEEEEeCCCC---EEEEEeeCCeEEEEE
Q 007489 70 ----------------------------------------LLQAHSFHKGDVNALAAAPSHN---RVFSTGSDGQVILYK 106 (601)
Q Consensus 70 ----------------------------------------~~~~~~~h~~~V~~l~~s~~~~---~l~s~~~dg~i~vw~ 106 (601)
.+..+.||...|.+++|...+. +|+|+|.|..|++|.
T Consensus 143 ~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~ 222 (764)
T KOG1063|consen 143 IKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWR 222 (764)
T ss_pred hhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEE
Confidence 2234568999999999987543 788999999999999
Q ss_pred eccCcCC----CCCCCCCccccceeEEe----------cCccccccceeEEEeeccccCCCCCCcccccccCCCCccccc
Q 007489 107 ASCESIG----PNDGLSSSEVIKKWIYV----------GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 172 (601)
Q Consensus 107 ~~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 172 (601)
+.-.... ....+..-.....+... ..+.+|.+.|.++.|. |++.
T Consensus 223 i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~---------p~~~------------- 280 (764)
T KOG1063|consen 223 IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH---------PEGL------------- 280 (764)
T ss_pred EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc---------cchh-------------
Confidence 8754411 11111111111222222 2345999999999998 7776
Q ss_pred cccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC--CeeEEeeccccC
Q 007489 173 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLEN 250 (601)
Q Consensus 173 ~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~ 250 (601)
.|++++.|.++.+|...+...+-....................|+|++..+++.+ |..++|.-....
T Consensus 281 -----------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 281 -----------DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred -----------hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 8999999999999998764322111111111112223456777999998777665 888999822111
Q ss_pred CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC---------------------
Q 007489 251 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV--------------------- 308 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~--------------------- 308 (601)
.- .......+|...|..++|+|.|.+|.+ +.|.+.|+|.--..+.
T Consensus 350 ~w-------------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 350 FW-------------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred ce-------------eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 00 112223456788999999999999888 8999988876431000
Q ss_pred ----------CcceEEE---------------------------------------------------------------
Q 007489 309 ----------GQGEWII--------------------------------------------------------------- 315 (601)
Q Consensus 309 ----------~~~~~~~--------------------------------------------------------------- 315 (601)
..+++.+
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 0000000
Q ss_pred --------------------eeecCCcCccceeEEEEccCCCeEEEEecCC-----cEEEEEcCCCceeeeeccCccccc
Q 007489 316 --------------------NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-----RIYVVDVSSSELLHTFTPCREEHD 370 (601)
Q Consensus 316 --------------------~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~ 370 (601)
+..++-+|.-.|.+++.+|+++++|+++... .|++|+..+....+.+..
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~------ 570 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG------ 570 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc------
Confidence 0000224445799999999999999998754 499999998888888888
Q ss_pred ccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEE---EeeccCCCceeEEEecCCCCCEEEEEeCCCeEEE
Q 007489 371 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW---FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYV 447 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~v 447 (601)
|.-.|+.|+|||||+||++.+.|+++.+|......... .....|..-|+++.|+| ++.+++|++.|.+|.|
T Consensus 571 -----HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 571 -----HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKV 644 (764)
T ss_pred -----cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEE
Confidence 99999999999999999999999999999975432211 11235777899999999 9999999999999999
Q ss_pred EEcCCCCcccchhcccCCcCc-ccccCCCcEEEEEeCCC
Q 007489 448 FDVEAKQLGEWSMQHTFVLPR-RYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 448 wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~p~ 485 (601)
|......-.. +++ ....+..+|+.++|.|-
T Consensus 645 W~~~~~~d~~--------i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 645 WEEPDLRDKY--------ISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred EeccCchhhh--------hhhhchhccCCceeeEEeecc
Confidence 9998772110 111 33457789999999886
No 59
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-29 Score=238.01 Aligned_cols=448 Identities=13% Similarity=0.085 Sum_probs=276.7
Q ss_pred CEEeee--cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcC--CCcEEEeeCCccchhhhcc
Q 007489 1 MLYSGS--SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--TGSVQFWDSRHGTLLQAHS 75 (601)
Q Consensus 1 ~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~--dg~i~vwd~~~~~~~~~~~ 75 (601)
++|+|- ..-.++||++.....+..+. .|.-.|+|++|+|.+ ++++.++ |-.|.+||++..-....-+
T Consensus 92 yvatGEcG~~pa~kVw~la~h~vVAEfv--------dHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk 163 (1080)
T KOG1408|consen 92 YVATGECGRTPASKVWSLAFHGVVAEFV--------DHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNK 163 (1080)
T ss_pred EEEecccCCCccceeeeeccccchhhhh--------hccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccc
Confidence 355654 45679999999988888888 899999999999999 8888776 4568889887554443333
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC-------CCCCccccceeEEecCcccc-ccceeEEEeec
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND-------GLSSSEVIKKWIYVGSVRAH-THDVRALTVAV 147 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~ 147 (601)
-...|..++|+.||.|++|++ +..|++|.++.+..-..+ .+........|..+..-.+- ... ..++.
T Consensus 164 -iss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAes--tfait- 238 (1080)
T KOG1408|consen 164 -ISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAES--TFAIT- 238 (1080)
T ss_pred -cceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccc--eEEEe-
Confidence 457899999999999999998 678999999887621000 00001111111111000000 000 01110
Q ss_pred cccCCCCCCcccccccCCCCcccccc----ccccc----------cCCCCEEEEecCCCeEEEEeccccCCcC----CC-
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFS----YHKWA----------HLGVPMLISAGDDTKLFAYCANEFTKFS----PH- 208 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~----------~~~~~~l~s~~~d~~v~~~~~~~~~~~~----~~- 208 (601)
..|. -+.|+ .++|. .-...++++|+.+|.|++|+..+..-.. .|
T Consensus 239 --------~qGh---------LvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 239 --------AQGH---------LVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred --------cccc---------eeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccc
Confidence 1110 00010 00111 0012489999999999999988743111 11
Q ss_pred ------------ccCCCCCccceeeeeccccCCCeE--EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecC
Q 007489 209 ------------EICPAPQRVPIHLVHNTIFSHTSL--LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 274 (601)
Q Consensus 209 ------------~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (601)
.....+........-.+.|++... ..+..+..+.||+++...... +. ....-|
T Consensus 302 lg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg------------k~-~s~lyH 368 (1080)
T KOG1408|consen 302 LGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG------------KC-SSMLYH 368 (1080)
T ss_pred cccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccccc------------ce-eeeeec
Confidence 111111111111223455665443 344567899999998765432 11 111222
Q ss_pred CCCeEEEEE------------cCCCCEEEEEcCCccEEEEeecCCCCcc----eEEEe----------------------
Q 007489 275 SRKIICSTI------------SNSGMLFAYSDHVKPSLFELKKGKVGQG----EWIIN---------------------- 316 (601)
Q Consensus 275 ~~~i~~~~~------------s~~g~~l~~~~~~~v~l~~~~~~~~~~~----~~~~~---------------------- 316 (601)
...|..+.. -|.+-++.++.|++|++|++....++.. ++...
T Consensus 369 S~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~f 448 (1080)
T KOG1408|consen 369 SACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIF 448 (1080)
T ss_pred cceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcc
Confidence 333333332 2345566668999999999986222211 00000
Q ss_pred ---eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCc---------------------------
Q 007489 317 ---KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR--------------------------- 366 (601)
Q Consensus 317 ---~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------------------- 366 (601)
.....+....+++++.||+|++||+|..-|+++||++.+.+.+..+..|.
T Consensus 449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceE
Confidence 00011122379999999999999999999999999997643322222211
Q ss_pred -------ccc-cccCCCCCC-------------------------------------------------CeeEEEEccCC
Q 007489 367 -------EEH-DREIQPSEP-------------------------------------------------PITKMFTSSDG 389 (601)
Q Consensus 367 -------~~~-~~~~~~~~~-------------------------------------------------~i~~l~~spd~ 389 (601)
+-. ...+.+|.. .+..++..|..
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 000 001112333 34557777888
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccCC--CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
+++++++.|..|+||+++++++...++.-++ +....+...| .+-||++.+.|.++.++|.-++++ .
T Consensus 609 k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEc-----------v 676 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGEC-----------V 676 (1080)
T ss_pred ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchh-----------h
Confidence 8999999999999999999999988876644 5677889999 999999999999999999999995 5
Q ss_pred cccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 468 RRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 468 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
..+.+|...|+++.|.+| -...|-+.++..|+++.+
T Consensus 677 A~m~GHsE~VTG~kF~nD-CkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVKFLND-CKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred hhhcCcchheeeeeeccc-chhheeecCCceEEEEEC
Confidence 578899999999999999 222333334444444443
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=229.34 Aligned_cols=285 Identities=15% Similarity=0.223 Sum_probs=238.0
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc--------ccccceEEEEEeCCCCEEEEEeeCCeEEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS--------FHKGDVNALAAAPSHNRVFSTGSDGQVILY 105 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~--------~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 105 (601)
+....+-|..||||| +|++|+.||.|.+||..+|++...++ -|..+|.|++|+.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 566778999999999 99999999999999999998765543 377899999999999999999999999999
Q ss_pred EeccCcCCCCCCCCCccccceeEEecCc-cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCE
Q 007489 106 KASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 184 (601)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (601)
.+.++.+ +..+ +.|+..|.++.|+ .|+. .
T Consensus 291 ri~tG~C-----------------lRrFdrAHtkGvt~l~FS---------rD~S------------------------q 320 (508)
T KOG0275|consen 291 RIETGQC-----------------LRRFDRAHTKGVTCLSFS---------RDNS------------------------Q 320 (508)
T ss_pred EEecchH-----------------HHHhhhhhccCeeEEEEc---------cCcc------------------------h
Confidence 9999987 5555 4899999999998 7775 9
Q ss_pred EEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCc
Q 007489 185 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 264 (601)
Q Consensus 185 l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 264 (601)
+++++.|.++++.-++..+.+....
T Consensus 321 iLS~sfD~tvRiHGlKSGK~LKEfr------------------------------------------------------- 345 (508)
T KOG0275|consen 321 ILSASFDQTVRIHGLKSGKCLKEFR------------------------------------------------------- 345 (508)
T ss_pred hhcccccceEEEeccccchhHHHhc-------------------------------------------------------
Confidence 9999999999998877644333222
Q ss_pred ceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEE
Q 007489 265 SLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIA 342 (601)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~ 342 (601)
+|...|+.+.|++||..+++ ++|++|++|+..+ +.++ ......+..-+|+++..-| +-..+++|
T Consensus 346 --------GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt---teC~---~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 346 --------GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT---TECL---STFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred --------CccccccceEEcCCCCeEEEecCCccEEEecCcc---hhhh---hhccCCCCcccceeEEEcCCCCceEEEE
Confidence 45677889999999999988 7999999999987 4443 1122333455778877777 44678899
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCc
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS 422 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 422 (601)
...++|+|.++. |+.+++|..... ..+...+.+.||.|.|+.+.+.|+.++.|++.+++...+++.+ ...
T Consensus 412 Nrsntv~imn~q-GQvVrsfsSGkR--------EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-Ekd 481 (508)
T KOG0275|consen 412 NRSNTVYIMNMQ-GQVVRSFSSGKR--------EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKD 481 (508)
T ss_pred cCCCeEEEEecc-ceEEeeeccCCc--------cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-ccc
Confidence 999999999986 899999876432 4456777889999999999999999999999999998888864 457
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 423 VTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
|..++-+| ..+.|++-+.||.+++|.
T Consensus 482 vIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccCc-ccchhhhhcccchhhhcC
Confidence 88899999 999999999999999995
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.6e-30 Score=244.69 Aligned_cols=265 Identities=21% Similarity=0.308 Sum_probs=225.0
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|++|+.||.|++|++.+++....+. .|...+.++.|+|++ .|++++.+|.|++||+.+++.+..+..|..
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred EEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC
Confidence 47899999999999999988888887 799999999999999 999999999999999998888888999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.++.|+++++++++++.|+.|.+|++.+++. ...+..|...+.+++++ |++.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~i~~~~~~---------~~~~ 148 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------------LTTLRGHTDWVNSVAFS---------PDGT 148 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------------EEEeccCCCcEEEEEEc---------CcCC
Confidence 999999999999999998899999999986553 45566788899999998 7665
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
++++++.|+.|++||+.....
T Consensus 149 ------------------------~l~~~~~~~~i~i~d~~~~~~----------------------------------- 169 (289)
T cd00200 149 ------------------------FVASSSQDGTIKLWDLRTGKC----------------------------------- 169 (289)
T ss_pred ------------------------EEEEEcCCCcEEEEEcccccc-----------------------------------
Confidence 888888899999999874211
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
+..+ ..+...+.+++++|+++.+++ +.++.+++|++.. +..+ .
T Consensus 170 ---------------------------~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~-----~ 213 (289)
T cd00200 170 ---------------------------VATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST---GKCL-----G 213 (289)
T ss_pred ---------------------------ceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECCC---Ccee-----c
Confidence 0011 123457899999999977777 6799999999975 2222 3
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 398 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d 398 (601)
.+..+...+.+++|+|++.++++++.+|.|++||+.+++.+..+.. |...|.+++|+|++++|++++.|
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-----------HTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-----------cCCcEEEEEECCCCCEEEEecCC
Confidence 3446667899999999988888888899999999998888888886 88899999999999999999999
Q ss_pred CeEEEEE
Q 007489 399 GDVYIFN 405 (601)
Q Consensus 399 g~i~iwd 405 (601)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-31 Score=244.45 Aligned_cols=283 Identities=14% Similarity=0.123 Sum_probs=245.1
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.|...|-+|.|+|.. .++++-..|.|.|||.++..++.++.-..-+|.+..|-+.-+++++|+.|..|++|+.++.+.
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek- 89 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK- 89 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee-
Confidence 588999999999999 888899999999999999999999998889999999999999999999999999999999885
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
+..+..|.+.|++++++ |.-. ++++++.|..
T Consensus 90 ----------------V~~FeAH~DyIR~iavH---------Pt~P------------------------~vLtsSDDm~ 120 (794)
T KOG0276|consen 90 ----------------VKTFEAHSDYIRSIAVH---------PTLP------------------------YVLTSSDDMT 120 (794)
T ss_pred ----------------eEEeeccccceeeeeec---------CCCC------------------------eEEecCCccE
Confidence 88999999999999998 5543 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++|+.+.. | .+.+...+
T Consensus 121 iKlW~we~~-----------------------------------------w---------------------a~~qtfeG 138 (794)
T KOG0276|consen 121 IKLWDWENE-----------------------------------------W---------------------ACEQTFEG 138 (794)
T ss_pred EEEeeccCc-----------------------------------------e---------------------eeeeEEcC
Confidence 999998751 0 23345556
Q ss_pred CCCCeEEEEEcCC-CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC--CeEEEEecCCcEE
Q 007489 274 ASRKIICSTISNS-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIY 349 (601)
Q Consensus 274 ~~~~i~~~~~s~~-g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~--~~l~~~~~dg~i~ 349 (601)
|...|.+++|.|. .+.+|+ +-|++|++|.+.. ... ..++.+|...|+++.|-+-| .+|++|+.|.+|+
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs---~~~-----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS---PHP-----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCC---CCC-----ceeeeccccCcceEEeccCCCcceEEecCCCceEE
Confidence 7788999999995 467777 7999999999975 223 25677999999999998844 6899999999999
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
|||.++..+++++.+ |...|..+.|+|.-.++++|+.||+|+||+..+-+...++. +....+++++-.
T Consensus 211 vWDyQtk~CV~TLeG-----------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~ 278 (794)
T KOG0276|consen 211 VWDYQTKSCVQTLEG-----------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAH 278 (794)
T ss_pred EeecchHHHHHHhhc-----------ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeec
Confidence 999999999999999 99999999999999999999999999999999888766654 344789999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcC
Q 007489 430 PQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+ +++.+++|.+.|.| +..+-
T Consensus 279 k-~~~~i~vG~Deg~i-~v~lg 298 (794)
T KOG0276|consen 279 K-GDGKIAVGFDEGSV-TVKLG 298 (794)
T ss_pred C-CCCeEEEeccCCcE-EEEcc
Confidence 8 77778888776654 33443
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=2.3e-30 Score=234.57 Aligned_cols=306 Identities=16% Similarity=0.161 Sum_probs=230.5
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc----hhhhc-cccccceEEEEEeCCCCEEEEEeeCCeEEEEEe
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT----LLQAH-SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 107 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~----~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~ 107 (601)
++|...|.++++.|.| +|++|+.|..|++||+..-. .-+.+ ......|.++.|++.|..|++.+.....+++|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 3899999999999999 99999999999999996321 11222 235568999999999999998888899999998
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
........ .+..+-...+....+|...+.+-+|+ |+.+ ..+++
T Consensus 244 dG~~~~e~-----~KGDQYI~Dm~nTKGHia~lt~g~wh---------P~~k-----------------------~~FlT 286 (641)
T KOG0772|consen 244 DGFEIVEF-----SKGDQYIRDMYNTKGHIAELTCGCWH---------PDNK-----------------------EEFLT 286 (641)
T ss_pred CCceeeee-----eccchhhhhhhccCCceeeeeccccc---------cCcc-----------------------cceEE
Confidence 77553100 01111111234567899999999998 7776 59999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
++.||++++|++...+.. ..|+....
T Consensus 287 ~s~DgtlRiWdv~~~k~q-----------------------------------~qVik~k~------------------- 312 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQ-----------------------------------LQVIKTKP------------------- 312 (641)
T ss_pred ecCCCcEEEEecCCchhh-----------------------------------eeEEeecc-------------------
Confidence 999999999999874310 01111110
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCcc--ceeEEEEccCCCeEEEEec
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGH 344 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~s~d~~~l~~~~~ 344 (601)
..+..-.++.++|++||.+||. +.||.|.+|+.... ... .....-..|.. .|++|.||+||++|++-+.
T Consensus 313 ---~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~--~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 313 ---AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR--TVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred ---CCCcccCceeeecCCCcchhhhcccCCceeeeecCCc--ccc---cceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 0112356889999999999999 79999999998541 111 11122345555 8999999999999999999
Q ss_pred CCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec------CCeEEEEEcCCceEEEEeec
Q 007489 345 DRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 345 dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~------dg~i~iwd~~~~~~~~~~~~ 417 (601)
|+++++||++.. +++....+.. ...+-+.++|||+.++|++|.. .|.+.+||..+...+..+.-
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~---------t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLP---------TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred CCceeeeeccccccchhhhcCCC---------ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 999999999764 4666655532 3456788999999999999863 57899999999888777763
Q ss_pred cCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 418 LEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 418 ~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.+..|..+.|+| .-+.|++++.||.++||=
T Consensus 456 -~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 456 -STASVVRCLWHP-KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred -CCceEEEEeecc-hhhheeeecCCCceEEEE
Confidence 467899999999 888899999999999873
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-31 Score=217.91 Aligned_cols=285 Identities=16% Similarity=0.160 Sum_probs=239.0
Q ss_pred CCceEEEEEEEe---eCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 35 GPELCIWSLLSL---RCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s---~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
+|..+|-.++|| |+| .|++++.||.-.+-+-.+|.-+.+|.+|.+.|++.+.+.+...-++++.|=+-++||.-++
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg 91 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG 91 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh
Confidence 899999999999 688 8999999999999999999999999999999999999988888899999999999999888
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
.. +.. ..|.+-|++++|+ .|.+ .|++|+.
T Consensus 92 de-----------------lhs-f~hkhivk~~af~---------~ds~------------------------~lltgg~ 120 (334)
T KOG0278|consen 92 DE-----------------LHS-FEHKHIVKAVAFS---------QDSN------------------------YLLTGGQ 120 (334)
T ss_pred hh-----------------hhh-hhhhheeeeEEec---------ccch------------------------hhhccch
Confidence 74 333 4689999999998 6665 9999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
+..+++||++.....+ .-
T Consensus 121 ekllrvfdln~p~App--------------------------------------------------------------~E 138 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPP--------------------------------------------------------------KE 138 (334)
T ss_pred HHHhhhhhccCCCCCc--------------------------------------------------------------hh
Confidence 9999999988622100 00
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
..+|...|..+.|....+.|++ +.+++||+||.++ +..+ +...+ ..+|+++.+++||++|.++. .+.|.
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT---gt~v---~sL~~---~s~VtSlEvs~dG~ilTia~-gssV~ 208 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT---GTEV---QSLEF---NSPVTSLEVSQDGRILTIAY-GSSVK 208 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEecc---CcEE---EEEec---CCCCcceeeccCCCEEEEec-CceeE
Confidence 1234577888888777777777 7999999999997 4442 22222 44789999999998776654 66799
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
+||..+..+++.+.. ...|.+...+|+...+++|+.|..++.||..++..+......|-++|.++.|+
T Consensus 209 Fwdaksf~~lKs~k~------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYKM------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred EeccccccceeeccC------------ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 999999999988874 56799999999999999999999999999999998766534455799999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 430 PQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
| +|...++|+.||+|++|....++.
T Consensus 277 P-dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 277 P-DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred C-CCceeeccCCCceEEEEEecCCCc
Confidence 9 999999999999999999987764
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=227.31 Aligned_cols=277 Identities=17% Similarity=0.198 Sum_probs=227.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc-ccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~ 78 (601)
+|++|+.||-|.+||..+|+..+.++........-+...|.|+.||.|. .|++|+.||.|+||.+.+|.++++|. .|+
T Consensus 227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt 306 (508)
T KOG0275|consen 227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT 306 (508)
T ss_pred eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc
Confidence 5899999999999999999987777654444444688999999999999 99999999999999999999999998 899
Q ss_pred cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 79 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
..|+|+.|+.|+..+++++.|.++++--+..+++ +..+++|+..|+...|. +||
T Consensus 307 kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-----------------LKEfrGHsSyvn~a~ft---------~dG 360 (508)
T KOG0275|consen 307 KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-----------------LKEFRGHSSYVNEATFT---------DDG 360 (508)
T ss_pred cCeeEEEEccCcchhhcccccceEEEeccccchh-----------------HHHhcCccccccceEEc---------CCC
Confidence 9999999999999999999999999999999987 88999999999999998 888
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
. .+++++.||+|++|+.++...+..+...
T Consensus 361 ~------------------------~iisaSsDgtvkvW~~KtteC~~Tfk~~--------------------------- 389 (508)
T KOG0275|consen 361 H------------------------HIISASSDGTVKVWHGKTTECLSTFKPL--------------------------- 389 (508)
T ss_pred C------------------------eEEEecCCccEEEecCcchhhhhhccCC---------------------------
Confidence 6 9999999999999999874433322210
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEEEcCCccEEEEeecCCCCcceEEEe
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
+.+..|.++..-|.. .++++...+++++.++. ++.+-...
T Consensus 390 ----------------------------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----GQvVrsfs 431 (508)
T KOG0275|consen 390 ----------------------------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----GQVVRSFS 431 (508)
T ss_pred ----------------------------------CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----ceEEeeec
Confidence 012345555555533 34444577788888776 33331121
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
... ...+...+.+.||.|.++++.++|+.++.|...+|++.+++.. |...+..++-+|..+.||+-+
T Consensus 432 SGk--REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-----------hEkdvIGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 432 SGK--REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-----------HEKDVIGLTHHPHQNLLASYS 498 (508)
T ss_pred cCC--ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-----------ccccccccccCcccchhhhhc
Confidence 111 1223456778999999999999999999999999999999988 889999999999999999999
Q ss_pred cCCeEEEEE
Q 007489 397 CFGDVYIFN 405 (601)
Q Consensus 397 ~dg~i~iwd 405 (601)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999994
No 66
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-28 Score=226.49 Aligned_cols=414 Identities=16% Similarity=0.172 Sum_probs=295.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
||.+-.||+|.||++..+-.....-.+ +....|.+++|++.++|.|.+.+|.|.-||+.+++++..+....+.|
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g------~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHG------PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAI 113 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEec------CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcce
Confidence 788999999999999876554433321 45678999999977799999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
++++.+|.+..++.|+.||.+..++...+.. .....+...+..|.+++|. |++.
T Consensus 114 Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------------~~~r~l~rq~sRvLslsw~---------~~~~-- 167 (691)
T KOG2048|consen 114 WSIAINPENTILAIGCDDGVLYDFSIGPDKI---------------TYKRSLMRQKSRVLSLSWN---------PTGT-- 167 (691)
T ss_pred eEEEeCCccceEEeecCCceEEEEecCCceE---------------EEEeecccccceEEEEEec---------CCcc--
Confidence 9999999999999999999777777776653 2233455557899999998 8886
Q ss_pred ccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcc-ceeeeeccccCCCeEEEEEeC-C
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV-PIHLVHNTIFSHTSLLLVQYS-C 239 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~ 239 (601)
.+++|+.||.|++||.........+......... ....++++.+-.++.++...+ |
T Consensus 168 ----------------------~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G 225 (691)
T KOG2048|consen 168 ----------------------KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAG 225 (691)
T ss_pred ----------------------EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCc
Confidence 8999999999999999987765533332222222 446888998887777766654 9
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+..|+-....-. +-..-|+..|.|++..+++..+.+ |-|+.+..|..... .. -|... .
T Consensus 226 ~V~FWd~~~gTLi----------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~--~~-~wv~~-~ 285 (691)
T KOG2048|consen 226 TVTFWDSIFGTLI----------------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN--KS-EWVIN-S 285 (691)
T ss_pred eEEEEcccCcchh----------------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC--cc-ceeee-c
Confidence 9999998766422 222345688999999999887777 89999999988862 22 25433 4
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce----------------------eeeec-cCcccc----cc
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL----------------------LHTFT-PCREEH----DR 371 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~----------------------~~~~~-~~~~~~----~~ 371 (601)
....|...+.+++..++ .+++|+.|..+.+-.....+. +..+. .+.... ..
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~ 363 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSV 363 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCc
Confidence 44566777888888776 688888888777655432110 00000 000000 00
Q ss_pred ----c---------CCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC------------------------------
Q 007489 372 ----E---------IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI------------------------------ 408 (601)
Q Consensus 372 ----~---------~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~------------------------------ 408 (601)
+ .......|.+.+.||+|++||.+.-. +++||.+.-
T Consensus 364 ~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k 442 (691)
T KOG2048|consen 364 ILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNK 442 (691)
T ss_pred ccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCce
Confidence 0 01234568999999999999988632 234443321
Q ss_pred ------------------ceE--EEE-eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcC
Q 007489 409 ------------------QRQ--HWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 409 ------------------~~~--~~~-~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
... ... .+......|..|..+| +|++||+.+.+|.|++|++++++.... +
T Consensus 443 ~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l--------~ 513 (691)
T KOG2048|consen 443 LFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLL--------K 513 (691)
T ss_pred EEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecc--------h
Confidence 000 000 0111125688999999 999999999999999999999875331 1
Q ss_pred cccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 468 RRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 468 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
. .....|+.++|+|...+..++.++.+.++-||+
T Consensus 514 ~---rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 514 V---RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred h---ccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 1 123689999999884556666678888999998
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-30 Score=231.76 Aligned_cols=267 Identities=18% Similarity=0.213 Sum_probs=224.2
Q ss_pred EeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 3 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
|+.|+- .+.||+..+...++++. .....|+++.|-.|| .|++|+..|.|+|+|.++...+..+.+|+++|
T Consensus 43 aVt~S~-rvqly~~~~~~~~k~~s--------rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv 113 (487)
T KOG0310|consen 43 AVTSSV-RVQLYSSVTRSVRKTFS--------RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPV 113 (487)
T ss_pred EEeccc-EEEEEecchhhhhhhHH--------hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCce
Confidence 444443 68999988877777776 678899999999999 88899999999999988777889999999999
Q ss_pred EEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 82 NALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 82 ~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
..+.|+|+ +..+++|+.|+.+++||+.+... ...+.+|++.|++.+++ |-..
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-----------------~~~l~~htDYVR~g~~~---------~~~~- 166 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-----------------QAELSGHTDYVRCGDIS---------PAND- 166 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEE-----------------EEEecCCcceeEeeccc---------cCCC-
Confidence 99999995 45677899999999999998763 45789999999999997 4332
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
.++++||.||.|++||++...
T Consensus 167 ----------------------hivvtGsYDg~vrl~DtR~~~------------------------------------- 187 (487)
T KOG0310|consen 167 ----------------------HIVVTGSYDGKVRLWDTRSLT------------------------------------- 187 (487)
T ss_pred ----------------------eEEEecCCCceEEEEEeccCC-------------------------------------
Confidence 489999999999999998621
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecC
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL 320 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~ 320 (601)
-......|..+|..+.+-|.|..|+++..+.+++||+.. +++.+ ...
T Consensus 188 --------------------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~--G~qll-----~~~ 234 (487)
T KOG0310|consen 188 --------------------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTT--GGQLL-----TSM 234 (487)
T ss_pred --------------------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecC--Cceeh-----hhh
Confidence 012233456889999999999999999999999999986 23332 344
Q ss_pred CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe
Q 007489 321 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 400 (601)
Q Consensus 321 ~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~ 400 (601)
..|...|+|+.+..++..|++++-|+.|++||+.+.+.++.+. ..++|.+++.|||++.++.|..||.
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceeeEEecCCCceEEEecccce
Confidence 5589999999999999999999999999999999999999888 5789999999999999999999998
Q ss_pred EEEEEcCCc
Q 007489 401 VYIFNLEIQ 409 (601)
Q Consensus 401 i~iwd~~~~ 409 (601)
+.+=+....
T Consensus 303 v~~rr~~~k 311 (487)
T KOG0310|consen 303 VSIRRREVK 311 (487)
T ss_pred eeeehhhcc
Confidence 876644333
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=8.7e-30 Score=239.00 Aligned_cols=421 Identities=17% Similarity=0.163 Sum_probs=272.7
Q ss_pred CEEeeecCCcEEEEECCCCc---------------------eEEE--EEeccCCCCCCCceEEEEEEEeeCC-eEEEEcC
Q 007489 1 MLYSGSSDGYIRSWDAKLGY---------------------EIYR--ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 56 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~---------------------~~~~--~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~ 56 (601)
+||++|.|.+||||.+.-+. .... +.........||+++|+++.|+|.+ .|++++.
T Consensus 208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa 287 (764)
T KOG1063|consen 208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA 287 (764)
T ss_pred EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence 58999999999999874322 1111 1222234556999999999999999 9999999
Q ss_pred CCcEEEeeCCccc----------------------------------------------------hhhhccccccceEEE
Q 007489 57 TGSVQFWDSRHGT----------------------------------------------------LLQAHSFHKGDVNAL 84 (601)
Q Consensus 57 dg~i~vwd~~~~~----------------------------------------------------~~~~~~~h~~~V~~l 84 (601)
|.++.+|...+.. +...+.||.+.|..+
T Consensus 288 DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv 367 (764)
T KOG1063|consen 288 DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDV 367 (764)
T ss_pred CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceee
Confidence 9999999764321 112246799999999
Q ss_pred EEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccC
Q 007489 85 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 164 (601)
Q Consensus 85 ~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~ 164 (601)
+|+|.|.+|++.|.|.+-++|-.-..+ ..|..+..-+.|..++.++++. +..
T Consensus 368 ~W~psGeflLsvs~DQTTRlFa~wg~q-------------~~wHEiaRPQiHGyDl~c~~~v---------n~~------ 419 (764)
T KOG1063|consen 368 DWDPSGEFLLSVSLDQTTRLFARWGRQ-------------QEWHEIARPQIHGYDLTCLSFV---------NED------ 419 (764)
T ss_pred eecCCCCEEEEeccccceeeecccccc-------------cceeeecccccccccceeeehc---------cCC------
Confidence 999999999999999999999776333 3388888899999999999996 322
Q ss_pred CCCccccccccccccCCCCEEEEecCCCeEEEEecccc-----CCcCCCccCCCCCccceeeeeccccCCCeEEE-EEeC
Q 007489 165 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF-----TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL-VQYS 238 (601)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 238 (601)
..+++|.....+++|+.... ..+...........+....++.+..+.+-.+. .+.+
T Consensus 420 ------------------~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 420 ------------------LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ------------------ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 28999999999999987641 11111000000001111222222222211111 1111
Q ss_pred Cee-EEeeccc-cC--CcccCCCCCCC----CCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-c-----CCccEEEEee
Q 007489 239 CRL-DILSVRL-EN--NVESRSSSGGH----ASTSLLVQVKSKASRKIICSTISNSGMLFAYS-D-----HVKPSLFELK 304 (601)
Q Consensus 239 ~~i-~i~~~~~-~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-----~~~v~l~~~~ 304 (601)
|.. ..|.-.. .. .....++...+ .-+..+.+ ..+|...|.+++.+|+|+++|++ . ...|++|+..
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K-LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK-LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA 560 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHH-hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence 111 1111000 00 00000111000 00111111 24567889999999999999993 2 3457888876
Q ss_pred cCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEE
Q 007489 305 KGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
. |... ..+.+|.-.|+.++|||||++|++.+.|.++.+|...... .-..|.. .+.|..-|..+
T Consensus 561 ~-------W~~~-~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~--------~k~HtRIIWdc 624 (764)
T KOG1063|consen 561 N-------WLQV-QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC--------LKAHTRIIWDC 624 (764)
T ss_pred c-------hhhh-heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc--------ccccceEEEEc
Confidence 5 3222 4688999999999999999999999999999999974332 1111111 22299999999
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCc--eEEEEee-ccCCCceeEEEecCCC----CCEEEEEeCCCeEEEEEcCCCC--
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWFIS-RLEGASVTAAGFPPQN----NNVLIITTSSNQVYVFDVEAKQ-- 454 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~~~~--~~~~~~~-~~~~~~v~~l~~~p~~----~~~l~~~~~dg~v~vwd~~~~~-- 454 (601)
.|+|++.++|++|.|..|+||..... +.+..+. ..++..|++++|.|.+ +..+++|-..|.|.+|....-.
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~ 704 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ 704 (764)
T ss_pred ccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccc
Confidence 99999999999999999999998877 3322211 1245789999998833 3377888899999999965221
Q ss_pred cccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 455 LGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.+.- ...-........+|.+.|..+.|.|.
T Consensus 705 ~~~~-~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 705 VTVG-TFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred ccce-eeeeccccccccChHHhhheeEeccc
Confidence 1000 00000111223356788999999987
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=232.68 Aligned_cols=282 Identities=17% Similarity=0.221 Sum_probs=229.5
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc--hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
..|.+.|..+.|.++. +|++|+.|..|++|+...++ .+.++.+-.+.|+++.|.++++++++++.|+.+++|++...
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 4899999999999995 99999999999999997655 77888898999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
+. ..++.+|+..|.++.|. ... ..+++|+.
T Consensus 252 r~-----------------~~TLsGHtdkVt~ak~~---------~~~------------------------~~vVsgs~ 281 (459)
T KOG0288|consen 252 RL-----------------RHTLSGHTDKVTAAKFK---------LSH------------------------SRVVSGSA 281 (459)
T ss_pred hh-----------------hhhhcccccceeeehhh---------ccc------------------------cceeeccc
Confidence 86 78999999999999986 222 25999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|.+|+.||+..........
T Consensus 282 DRtiK~WDl~k~~C~kt~l------------------------------------------------------------- 300 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTVL------------------------------------------------------------- 300 (459)
T ss_pred cchhhhhhhhhhheecccc-------------------------------------------------------------
Confidence 9999999998622111000
Q ss_pred EecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 271 KSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
. ...+..+..+ ...++++ .|++|++||.+. ..+. ...+. .+.|+++..++++..|.+++.|.++.
T Consensus 301 -~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs---~~~~-----~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 301 -P--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRS---ADKT-----RSVPL-GGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred -c--cccccceEec--ceeeeecccccceEEEeccC---Ccee-----eEeec-CcceeeEeeccCCeEEeeecCCCcee
Confidence 0 0222233332 3344554 789999999986 3332 22222 33899999999999999999999999
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCC-ceeEEEe
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA-SVTAAGF 428 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~l~~ 428 (601)
+.|+.+.+..+++..... ......+.+.|||++.|+|+|+.||.|+||++.++++...+...+.. .|++++|
T Consensus 367 viDlRt~eI~~~~sA~g~-------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGF-------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred eeecccccEEEEeecccc-------ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 999999888888875321 12344889999999999999999999999999999998887765543 6999999
Q ss_pred cCCCCCEEEEEeCCCeEEEE
Q 007489 429 PPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 429 ~p~~~~~l~~~~~dg~v~vw 448 (601)
+| .|..|++++.++.+.+|
T Consensus 440 ~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 440 NP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred cC-CCchhhcccCCcceEec
Confidence 99 99999999999999998
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.8e-29 Score=266.18 Aligned_cols=279 Identities=12% Similarity=0.152 Sum_probs=211.3
Q ss_pred CEEeeecCCcEEEEECCCC----c----eEEEEEeccCCCCCCCceEEEEEEEeeC-C-eEEEEcCCCcEEEeeCCccch
Q 007489 1 MLYSGSSDGYIRSWDAKLG----Y----EIYRITVGLGGLGSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGTL 70 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~----~----~~~~~~~~~~~~~~~h~~~V~~v~~s~~-g-~l~s~~~dg~i~vwd~~~~~~ 70 (601)
+||+|+.|++|+|||+.+. . .+..+ .+...|.+++|++. + +|++++.||.|++||+.+++.
T Consensus 497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---------~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~ 567 (793)
T PLN00181 497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---------ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL 567 (793)
T ss_pred EEEEEeCCCEEEEEECCcccccccccccceEEe---------cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 4899999999999997532 1 11222 23467999999975 4 899999999999999999999
Q ss_pred hhhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 71 LQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.. ...+.. ...+.++.|.
T Consensus 568 ~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-----------------~~~~~~-~~~v~~v~~~--- 626 (793)
T PLN00181 568 VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-----------------IGTIKT-KANICCVQFP--- 626 (793)
T ss_pred EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-----------------EEEEec-CCCeEEEEEe---
Confidence 999999999999999997 789999999999999999987653 334443 3568888885
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
.+++. .|++|+.|+.|++||++....
T Consensus 627 -----~~~g~------------------------~latgs~dg~I~iwD~~~~~~------------------------- 652 (793)
T PLN00181 627 -----SESGR------------------------SLAFGSADHKVYYYDLRNPKL------------------------- 652 (793)
T ss_pred -----CCCCC------------------------EEEEEeCCCeEEEEECCCCCc-------------------------
Confidence 03444 999999999999999875210
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~ 308 (601)
.+ .....|...|.++.|. ++.+|++ +.|+.|++||+.....
T Consensus 653 ------------------------------------~~-~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 653 ------------------------------------PL-CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred ------------------------------------cc-eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 00 1112345778899997 5666766 7999999999975211
Q ss_pred ---CcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCc--ccccccCCCCCCCeeEE
Q 007489 309 ---GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR--EEHDREIQPSEPPITKM 383 (601)
Q Consensus 309 ---~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~l 383 (601)
...+ ..+.+|...+..++|+|++.+|++|+.|+.|++|+......+..+.... .........+...|.++
T Consensus 695 ~~~~~~l-----~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v 769 (793)
T PLN00181 695 GINETPL-----HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769 (793)
T ss_pred ccCCcce-----EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence 1122 3466788889999999999999999999999999987665443332110 00001112356779999
Q ss_pred EEccCCCEEEEEecCCeEEEEEc
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~ 406 (601)
+|+|++.+|++|+.||.|+||++
T Consensus 770 ~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999999999986
No 71
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.4e-29 Score=212.31 Aligned_cols=323 Identities=16% Similarity=0.172 Sum_probs=227.5
Q ss_pred EEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchh--hhcc--ccccceEEEEE
Q 007489 12 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL--QAHS--FHKGDVNALAA 86 (601)
Q Consensus 12 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~--~~~~--~h~~~V~~l~~ 86 (601)
+-|+.+.....+.+.. ..+++|.+.|++|+|+.|| .|++++.|+.|+||++.+.+.. +.++ -.-+..+.++|
T Consensus 64 ~~~k~~q~~f~Hpl~~---~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F 140 (420)
T KOG2096|consen 64 DQWKAKQPTFVHPLNV---SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF 140 (420)
T ss_pred hhhcccCCCcccchhh---hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE
Confidence 3455554444444442 3456999999999999999 9999999999999999865422 1111 12235688999
Q ss_pred eCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCC
Q 007489 87 APSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 165 (601)
Q Consensus 87 s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~ 165 (601)
+||-+.++ +.-...++++|.+...+-.. ..-....|.....-+.|.-++..+-+. .+++
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~-----~~~~~v~~D~~~f~~kh~v~~i~iGiA---------~~~k------ 200 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGS-----GSHHFVHIDNLEFERKHQVDIINIGIA---------GNAK------ 200 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCC-----CCcccccccccccchhcccceEEEeec---------CCce------
Confidence 99987655 55566789999886544210 011112333333445566666666654 4444
Q ss_pred CCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEee
Q 007489 166 REKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILS 245 (601)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~ 245 (601)
+|++++.|..|.+|+++. +.+
T Consensus 201 ------------------~imsas~dt~i~lw~lkG-q~L---------------------------------------- 221 (420)
T KOG2096|consen 201 ------------------YIMSASLDTKICLWDLKG-QLL---------------------------------------- 221 (420)
T ss_pred ------------------EEEEecCCCcEEEEecCC-cee----------------------------------------
Confidence 999999999999999883 111
Q ss_pred ccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCc
Q 007489 246 VRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL 324 (601)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (601)
..+... +..-...++||+|+++++ +..-.|++|..-....+...-......+.+|.
T Consensus 222 ----------------------~~idtn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 222 ----------------------QSIDTN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred ----------------------eeeccc-cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 111111 244566789999999999 67888999998764444321112225688999
Q ss_pred cceeEEEEccCCCeEEEEecCCcEEEEEcCC-------CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 325 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
..|..++|++++.++++.+.||+++|||++- .+.++++..+ +....+....++.||+|+.||.+..
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p-------l~aag~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP-------LHAAGSEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc-------hhhcCCCceEEEeCCCCcEEEeecC
Confidence 9999999999999999999999999999742 1233333211 1113344558999999999987654
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
..+++|..++++....+...|+..|++++|++ +|+++++++ |..++++.
T Consensus 352 -s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 352 -SDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -CceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 46999999999887788888999999999999 999999987 66788876
No 72
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.1e-27 Score=216.65 Aligned_cols=336 Identities=15% Similarity=0.241 Sum_probs=246.8
Q ss_pred ecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhh---ccc-cccc
Q 007489 6 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA---HSF-HKGD 80 (601)
Q Consensus 6 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~---~~~-h~~~ 80 (601)
+.+..+.|||.+.+......+ .-...|....|+|.+ .|+.....|.+.+|+++.+.+..+ +.. ....
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk--------~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVK--------TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred CCccccchhhchhhhccCcce--------eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE
Confidence 456678889988777766665 456789999999988 666666678999999998765533 333 3468
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
|+|++|.++|+ ++||..+|.|.||+..+.+. .+....|...|.+++.. .+|
T Consensus 249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------~k~~~aH~ggv~~L~~l---------r~G-- 299 (626)
T KOG2106|consen 249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------SKQVHAHDGGVFSLCML---------RDG-- 299 (626)
T ss_pred EEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------EeEeeecCCceEEEEEe---------cCc--
Confidence 99999999887 67999999999999977664 34445999999999987 676
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
.|+||+.|..|..|| .....+.... .|.. ...++.++-...+.++.+..+.
T Consensus 300 -----------------------tllSGgKDRki~~Wd-~~y~k~r~~e---lPe~--~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 300 -----------------------TLLSGGKDRKIILWD-DNYRKLRETE---LPEQ--FGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred -----------------------cEeecCccceEEecc-cccccccccc---Cchh--cCCeeEEecCCCcEEEeeccce
Confidence 688899999999999 3333332222 1111 1334444433333333333333
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeec
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
+--=.+... .......|......++.+|+...+++ +.|+.+++|+ . .+..|....
T Consensus 351 iL~Gt~~~~-----------------f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~----~k~~wt~~~-- 406 (626)
T KOG2106|consen 351 ILQGTLENG-----------------FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D----HKLEWTKII-- 406 (626)
T ss_pred EEEeeecCC-----------------ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C----CceeEEEEe--
Confidence 322222211 12333455668899999999887777 8999999999 2 345554332
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
..++.++.|+|.| .+|.|+..|...+.|.++...+. +.. .+.++++++|+|+|.+||.|+.|+
T Consensus 407 ----~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~-----------d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 407 ----EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHT-----------DNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred ----cCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEe-----------cCCceEEEEEcCCCCEEEEecCCC
Confidence 2377899999999 99999999999999998855443 333 567899999999999999999999
Q ss_pred eEEEEEcCCce-EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 400 DVYIFNLEIQR-QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 400 ~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.|+||.++... ....+...++++|+++.|++ |+++|.+-+.|-.|..|.
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 99999986543 33445555678999999999 999999999999999995
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=247.95 Aligned_cols=264 Identities=19% Similarity=0.313 Sum_probs=229.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEE-EEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYR-ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
++++|+.|++|++||..++..+.. +. ||.+.|++++|..-+ +|++|+.|.++++||..+|++..++.+|.
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~--------GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~ 291 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLV--------GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT 291 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeecc--------CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC
Confidence 478999999999999999999888 87 999999999998634 99999999999999999999999999999
Q ss_pred cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 79 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
..|.++... ...+++|+.|.+|++|++.++.. +..+.+|...|+++.+. +
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~-----------------l~l~~~h~~~V~~v~~~-----------~ 341 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC-----------------LNLLRGHTGPVNCVQLD-----------E 341 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcce-----------------EEEeccccccEEEEEec-----------C
Confidence 999998874 56788899999999999998885 77888899999999974 2
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
+++++|+.|++|.+|++.+++
T Consensus 342 ------------------------~~lvsgs~d~~v~VW~~~~~~----------------------------------- 362 (537)
T KOG0274|consen 342 ------------------------PLLVSGSYDGTVKVWDPRTGK----------------------------------- 362 (537)
T ss_pred ------------------------CEEEEEecCceEEEEEhhhce-----------------------------------
Confidence 399999999999999976411
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeee
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+ .
T Consensus 363 ------------------------------------------------------------------------cl-----~ 365 (537)
T KOG0274|consen 363 ------------------------------------------------------------------------CL-----K 365 (537)
T ss_pred ------------------------------------------------------------------------ee-----e
Confidence 11 3
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
.+.+|...|.++.+.+. .++++|+.|+.|++||+.+. +++.++.+ |..-+..+.+ .+++|++++.
T Consensus 366 sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~-----------h~~~v~~l~~--~~~~Lvs~~a 431 (537)
T KOG0274|consen 366 SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG-----------HTSLVSSLLL--RDNFLVSSSA 431 (537)
T ss_pred eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC-----------Cccccccccc--ccceeEeccc
Confidence 34567778888877655 78999999999999999999 89999998 8888877776 8889999999
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
|+.|++||..++++...+...|...|+++++. ...+++++.|+.+.+||+.++++
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCch
Confidence 99999999999999988877544678888775 35799999999999999999885
No 74
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=6.1e-28 Score=231.37 Aligned_cols=401 Identities=14% Similarity=0.193 Sum_probs=291.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
.|+.|+.+|.+.|||+.+++.+++++ ++...|+++.=+|-= .++.|..+|+|.+++++.++.+.+|+...+
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~--------~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQ--------EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEec--------ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc
Confidence 37889999999999999999999999 899999999988877 889999999999999999999999995569
Q ss_pred ceEEEEEeCCCCEE-EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 80 DVNALAAAPSHNRV-FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 80 ~V~~l~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
.|++++|..||+.+ ++|+..|.+.+||++.... .......|...|....|. |..
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl----------------~~v~~nah~~sv~~~~fl---------~~e 300 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL----------------INVTRNAHYGSVTGATFL---------PGE 300 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCee----------------eeeeeccccCCcccceec---------CCC
Confidence 99999999999755 5667779999999998774 122344788888888886 444
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC-CCeEEEEEe
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS-HTSLLLVQY 237 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 237 (601)
+.+++++.|..+++|=..+....+... .....+..+..++.|- .++..+.+.
T Consensus 301 ------------------------pVl~ta~~DnSlk~~vfD~~dg~pR~L---R~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 301 ------------------------PVLVTAGADNSLKVWVFDSGDGVPRLL---RSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred ------------------------ceEeeccCCCceeEEEeeCCCCcchhe---eeccCCCCCchheeeeccCcEEEEec
Confidence 499999999977766444322110000 0011111233344444 456666555
Q ss_pred C--CeeEEeeccccCCcccCCCCCCCCC--cceEEEEEecCCCCeEEEEEcCC-----CCEEEE-EcCCccEEEEeecCC
Q 007489 238 S--CRLDILSVRLENNVESRSSSGGHAS--TSLLVQVKSKASRKIICSTISNS-----GMLFAY-SDHVKPSLFELKKGK 307 (601)
Q Consensus 238 ~--~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~-~~~~~v~l~~~~~~~ 307 (601)
. +..+.+.+......+.......... ..-+.....-...+|..+++... .+.+++ -.+..++.|+++...
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 4 4455554443322211111000000 00000001111345666666542 234444 467788889988633
Q ss_pred CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 308 VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
-|. |.+....+......+++++.++.|++.+.|...|.|.+|++++|-....|.... .|..+|+.++...
T Consensus 434 ~G~--~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~--------ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 434 SGR--HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP--------AHKGEVTGLAVDG 503 (910)
T ss_pred ccc--EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc--------cccCceeEEEecC
Confidence 333 334444445556789999999999999999999999999999998888884111 1999999999988
Q ss_pred CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcC
Q 007489 388 DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
-++.+++++.+|.+.+||..+......+.. +..++++..+. ....++++..|-.|+++|+.+.+ ..
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~k-----------vv 569 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRK-----------VV 569 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeecc--CCCcceeeeee-hhhhhhhhcCceeEEEEEchhhh-----------hh
Confidence 889999999999999999999887666654 35789999998 88899999999999999999887 47
Q ss_pred cccccCCCcEEEEEeCCC
Q 007489 468 RRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 468 ~~~~~~~~~v~~i~~~p~ 485 (601)
+.+.+|.+.|++++||||
T Consensus 570 R~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPD 587 (910)
T ss_pred HHhhccccceeeeEeCCC
Confidence 789999999999999999
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=234.38 Aligned_cols=320 Identities=18% Similarity=0.236 Sum_probs=244.8
Q ss_pred EEeeecCCcEEEEECCCC----ceEEEEEeccCCCCCCCceEEEEEEEee------------CCeEEEEcCCCcEEEeeC
Q 007489 2 LYSGSSDGYIRSWDAKLG----YEIYRITVGLGGLGSGPELCIWSLLSLR------------CGTLVSADSTGSVQFWDS 65 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~h~~~V~~v~~s~------------~g~l~s~~~dg~i~vwd~ 65 (601)
|..--.|..|.|||++.- ++-.-+ -|...||.|.-.| .+-++++++|++|++||+
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~l---------yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l 409 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSML---------YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL 409 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeee---------eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence 455667999999999753 333333 5999999997766 235899999999999999
Q ss_pred Cccchhhh----------------------c---------------cccccceEEEEEeCCCCEEEEEeeCCeEEEEEec
Q 007489 66 RHGTLLQA----------------------H---------------SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 66 ~~~~~~~~----------------------~---------------~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~ 108 (601)
..+..-.. + -.....+.+++.+|+|++|++|..-|++++|++.
T Consensus 410 ~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 410 AFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred ccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEeh
Confidence 75321000 0 0123468999999999999999999999999999
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
..+. ...+..|...|.++.++.+ +- +..+|+++
T Consensus 490 ~l~~-----------------~~~~eAHesEilcLeyS~p--------~~----------------------~~kLLASa 522 (1080)
T KOG1408|consen 490 ELEY-----------------TCFMEAHESEILCLEYSFP--------VL----------------------TNKLLASA 522 (1080)
T ss_pred hhhh-----------------hhheecccceeEEEeecCc--------hh----------------------hhHhhhhc
Confidence 8764 6678899999999999722 11 12489999
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.|.-|.+||...... +.
T Consensus 523 srdRlIHV~Dv~rny~--------------------------------------------------------------l~ 540 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYD--------------------------------------------------------------LV 540 (1080)
T ss_pred cCCceEEEEecccccc--------------------------------------------------------------hh
Confidence 9999999999875221 11
Q ss_pred EEEecCCCCeEEEEEcCCC--CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 269 QVKSKASRKIICSTISNSG--MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g--~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
+....|...|+++.|..+| ...++ |.|..| +|+.........++ .+..-.-....+..|+..|..+++++++.|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f--~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLF--PRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceec--cccccccccceEEEeeeCCCcceEEEEecc
Confidence 2223456789999887776 33444 666544 44443311112221 111111123468899999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
..|+||++++++..+.|++.+. |.+....+...|.|.|||+.+.|.++.++|..++++...+.. |+..|+.
T Consensus 618 rnirif~i~sgKq~k~FKgs~~--------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-HsE~VTG 688 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRD--------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HSEAVTG 688 (1080)
T ss_pred cceEEEeccccceeeeeccccc--------CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cchheee
Confidence 9999999999999999998654 778899999999999999999999999999999999877664 6789999
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 426 AGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
|.|.+ |-+.|++++.||+|+||.+..
T Consensus 689 ~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 689 VKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeecc-cchhheeecCCceEEEEECch
Confidence 99999 999999999999999999864
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.9e-30 Score=226.85 Aligned_cols=266 Identities=18% Similarity=0.158 Sum_probs=212.1
Q ss_pred CEEeeecCCcEEEEECCCCc--eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h 77 (601)
.|++|+.|..|.+|++..++ .+.++. |-.+.|+++.|.+++ .+++++.|+.+++|++...++..++.+|
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH 260 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLA--------GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH 260 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhh--------ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence 37899999999999987655 455555 788899999999999 8999999999999999999999999999
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
+..|+++.|......+++|+.|.+|+.||+....+ ..+.. ....+..++..
T Consensus 261 tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-----------------~kt~l-~~S~cnDI~~~----------- 311 (459)
T KOG0288|consen 261 TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-----------------SKTVL-PGSQCNDIVCS----------- 311 (459)
T ss_pred ccceeeehhhccccceeeccccchhhhhhhhhhhe-----------------ecccc-ccccccceEec-----------
Confidence 99999999998777799999999999999998765 23222 13344444432
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
. ..++||-.|++|++||.+...
T Consensus 312 ~------------------------~~~~SgH~DkkvRfwD~Rs~~---------------------------------- 333 (459)
T KOG0288|consen 312 I------------------------SDVISGHFDKKVRFWDIRSAD---------------------------------- 333 (459)
T ss_pred c------------------------eeeeecccccceEEEeccCCc----------------------------------
Confidence 1 278999999999999988622
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
..... +..+.|+++..+++|..|.+ +.|.++.+.|++.. ..+ ..-
T Consensus 334 ----------------------------~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~--eI~--~~~ 379 (459)
T KOG0288|consen 334 ----------------------------KTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK--EIR--QTF 379 (459)
T ss_pred ----------------------------eeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecccc--cEE--EEe
Confidence 11111 12368999999999987777 79999999999861 111 111
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
...........+.+.|||++.|+++|+.||.|+||++.++++...+.... ....|++++|+|.|.+|++++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~---------s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST---------SNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC---------CCcceEEEEEcCCCchhhccc
Confidence 11111112347899999999999999999999999999999988888742 233799999999999999999
Q ss_pred cCCeEEEE
Q 007489 397 CFGDVYIF 404 (601)
Q Consensus 397 ~dg~i~iw 404 (601)
.++.+.+|
T Consensus 451 k~~~v~lW 458 (459)
T KOG0288|consen 451 KQKAVTLW 458 (459)
T ss_pred CCcceEec
Confidence 99999999
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-29 Score=208.25 Aligned_cols=292 Identities=14% Similarity=0.173 Sum_probs=225.5
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.||+.+++.+.|+.+| +|.+++.|....||-..+|+.+.++.+|++.|+|+..+-+.+++++|+.|.++++||+.++++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 3899999999999999 999999999999999988999999999999999999999999999999999999999999984
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec---
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--- 189 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--- 189 (601)
+..+. ....|+.+.|+ ++|. +++...
T Consensus 87 -----------------la~~k-~~~~Vk~~~F~---------~~gn------------------------~~l~~tD~~ 115 (327)
T KOG0643|consen 87 -----------------LATWK-TNSPVKRVDFS---------FGGN------------------------LILASTDKQ 115 (327)
T ss_pred -----------------EEEee-cCCeeEEEeec---------cCCc------------------------EEEEEehhh
Confidence 33332 35678889987 7765 443332
Q ss_pred --CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 190 --DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 190 --~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
..+.|.++|++.... .. .....+
T Consensus 116 mg~~~~v~~fdi~~~~~-----------------------------------------------~~--------~s~ep~ 140 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSS-----------------------------------------------DI--------DSEEPY 140 (327)
T ss_pred cCcceEEEEEEccCChh-----------------------------------------------hh--------cccCce
Confidence 223666666654110 00 000123
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
..+..+ ...++.+-|+|-+++|++| .+|.|.+||++. +..+ + .....|...|+.+++++|..++++++.|.
T Consensus 141 ~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~---g~~~--v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 141 LKIPTP-DSKITSALWGPLGETIIAGHEDGSISIYDART---GKEL--V--DSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred EEecCC-ccceeeeeecccCCEEEEecCCCcEEEEEccc---Ccee--e--echhhhccccccccccCCcceEEecccCc
Confidence 333333 3779999999999999995 899999999986 4444 1 33456677999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEE--------------EEcCCceEE
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI--------------FNLEIQRQH 412 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~i--------------wd~~~~~~~ 412 (601)
+-++||..+.++++++. ...+|++.+++|-...++.|+.....-| |++-..+..
T Consensus 213 takl~D~~tl~v~Kty~------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYT------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred cceeeeccceeeEEEee------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 99999999999999998 5788999999998887777654322222 121111112
Q ss_pred EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 413 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 413 ~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
..+.. |-++|++++|+| +|+..++|+.||.|++...+..
T Consensus 281 grvkG-HFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 281 GRVKG-HFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccc-cccCcceeEECC-CCcccccCCCCceEEEEEeccc
Confidence 22332 336999999999 9999999999999999877653
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=226.15 Aligned_cols=313 Identities=14% Similarity=0.145 Sum_probs=218.8
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
..+++|+..|.++++.|.|..|++||.|..|++||+.......+. + ........+.|+++.|+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------f--r~l~P~E~h~i~sl~ys----- 223 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------F--RQLQPCETHQINSLQYS----- 223 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh----------h--hccCcccccccceeeec-----
Confidence 346789999999999999999999999999999999886532111 1 12223447789999998
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
+.|. +|++.+.....+++|-..+....
T Consensus 224 ----~Tg~------------------------~iLvvsg~aqakl~DRdG~~~~e------------------------- 250 (641)
T KOG0772|consen 224 ----VTGD------------------------QILVVSGSAQAKLLDRDGFEIVE------------------------- 250 (641)
T ss_pred ----CCCC------------------------eEEEEecCcceeEEccCCceeee-------------------------
Confidence 6665 77777767777887765422111
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEEEcCCccEEEEeecCCCC
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSLFELKKGKVG 309 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~v~l~~~~~~~~~ 309 (601)
+.-|...|-++.... +|...++|.+|+|+. .+|.++.|+++|+|++......
T Consensus 251 ----~~KGDQYI~Dm~nTK----------------------GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 251 ----FSKGDQYIRDMYNTK----------------------GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred ----eeccchhhhhhhccC----------------------CceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 111444444444332 345778999999976 4555589999999999873333
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce--eeeeccCcccccccCCCCCC--CeeEEEE
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEP--PITKMFT 385 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~--~i~~l~~ 385 (601)
..+ +......+..-+++.++|++||++||+|+.||.|.+|+..+... ...+... |.. .|++|.|
T Consensus 305 ~qV--ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A----------H~~g~~Itsi~F 372 (641)
T KOG0772|consen 305 LQV--IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA----------HLPGQDITSISF 372 (641)
T ss_pred eeE--EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec----------cCCCCceeEEEe
Confidence 232 22233334455789999999999999999999999999754322 2222211 555 8999999
Q ss_pred ccCCCEEEEEecCCeEEEEEcCCceEE-EEeeccC-CCceeEEEecCCCCCEEEEEeC------CCeEEEEEcCCCCccc
Q 007489 386 SSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLE-GASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQLGE 457 (601)
Q Consensus 386 spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~~~-~~~v~~l~~~p~~~~~l~~~~~------dg~v~vwd~~~~~~~~ 457 (601)
|+||++|++-+.|+++++||+...+.. .....+. ..+-+.++||| +.++|++|+. .|.+++||..+-+.
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~-- 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDT-- 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceee--
Confidence 999999999999999999999876542 1111111 13568899999 9999999864 47899999877653
Q ss_pred chhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 458 WSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
...+.-....|..+.|+|. -|.|.+...++...+.++.
T Consensus 450 ---------v~ki~i~~aSvv~~~Whpk--LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 450 ---------VYKIDISTASVVRCLWHPK--LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ---------EEEecCCCceEEEEeecch--hhheeeecCCCceEEEECc
Confidence 2223233567999999997 6667766555555544443
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-29 Score=204.55 Aligned_cols=265 Identities=15% Similarity=0.123 Sum_probs=210.6
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCC-ccchhhhccccccceEEE
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR-HGTLLQAHSFHKGDVNAL 84 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l 84 (601)
.|.+.|-++..++-+..+..- .-++.+..|+|+++. .+++++.||++++||+. ...++..++.|...|.++
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~------d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Sv 110 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSY------DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSV 110 (311)
T ss_pred CceEEEEecCCCCCeEEEEee------ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEe
Confidence 578999998655545444310 357889999999877 89999999999999964 246889999999999999
Q ss_pred EEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccccc
Q 007489 85 AAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 163 (601)
Q Consensus 85 ~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~ 163 (601)
.|++ ++..+++++-|++|++|+...+.. +.++.+|..-|...+|+ |...
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~S-----------------v~Tf~gh~~~Iy~a~~s---------p~~~---- 160 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNS-----------------VQTFNGHNSCIYQAAFS---------PHIP---- 160 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcc-----------------eEeecCCccEEEEEecC---------CCCC----
Confidence 9999 566777889999999999887764 77889999999999987 4332
Q ss_pred CCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEE
Q 007489 164 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDI 243 (601)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i 243 (601)
+.+++++.|+++++||++..
T Consensus 161 -------------------nlfas~Sgd~~l~lwdvr~~----------------------------------------- 180 (311)
T KOG0277|consen 161 -------------------NLFASASGDGTLRLWDVRSP----------------------------------------- 180 (311)
T ss_pred -------------------CeEEEccCCceEEEEEecCC-----------------------------------------
Confidence 48888888888888886630
Q ss_pred eeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcC
Q 007489 244 LSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRK 323 (601)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (601)
++. ..++.|
T Consensus 181 -----------------------------------------------------------------gk~------~~i~ah 189 (311)
T KOG0277|consen 181 -----------------------------------------------------------------GKF------MSIEAH 189 (311)
T ss_pred -----------------------------------------------------------------Cce------eEEEec
Confidence 111 113344
Q ss_pred ccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCe
Q 007489 324 LQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGD 400 (601)
Q Consensus 324 ~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~ 400 (601)
...|.++.|+. +...|++|+.|+.|++||++..+ ++..+.+ |.-.|..++|||.. ..||+++.|-+
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-----------h~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG-----------HGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC-----------CceEEEEEecCcchhhHhhhccccce
Confidence 55677888877 56779999999999999997654 6677766 99999999999964 58899999999
Q ss_pred EEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 401 VYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 401 i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
++|||.............|..-+..+.|++.++.++|.++-|..++||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999985543323333577789999999988899999999999999985
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1e-27 Score=198.95 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=217.9
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
+.+.+|.+.|.+++|+.+|..|++|+.|+++.+|+++..... .....++|+..|..+++.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~----- 73 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWD----- 73 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeC-----
Confidence 556789999999999999999999999999999999886531 123568899999999987
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
|... +.+++++.|.+|++||.+..+
T Consensus 74 ----~~~~-----------------------d~~atas~dk~ir~wd~r~~k---------------------------- 98 (313)
T KOG1407|consen 74 ----PKHP-----------------------DLFATASGDKTIRIWDIRSGK---------------------------- 98 (313)
T ss_pred ----CCCC-----------------------cceEEecCCceEEEEEeccCc----------------------------
Confidence 3322 599999999999999998632
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCc
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~ 310 (601)
.+.++... ..-.-++|+|+|.++++ +.|..|...|.+. .+
T Consensus 99 ----------------------------------~~~~i~~~--~eni~i~wsp~g~~~~~~~kdD~it~id~r~---~~ 139 (313)
T KOG1407|consen 99 ----------------------------------CTARIETK--GENINITWSPDGEYIAVGNKDDRITFIDART---YK 139 (313)
T ss_pred ----------------------------------EEEEeecc--CcceEEEEcCCCCEEEEecCcccEEEEEecc---cc
Confidence 12222222 23345679999999998 6888899998875 11
Q ss_pred ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
.. .-....-.++.++|+.++.+++.....|+|.|....+.+++.+++. |.....||.|+|+|+
T Consensus 140 ~~------~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-----------H~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 140 IV------NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-----------HPSNCICIEFDPDGR 202 (313)
T ss_pred ee------ehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-----------CCcceEEEEECCCCc
Confidence 11 1112233668889998888888778789999999999999999998 899999999999999
Q ss_pred EEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccc
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRY 470 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 470 (601)
|+|+|+.|..+.+||++..-+.+.+.++. -+|..+.|+. ++++||++++|..|-|=++++|.. -| .+
T Consensus 203 yfA~GsADAlvSLWD~~ELiC~R~isRld-wpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~-~~----------eI 269 (313)
T KOG1407|consen 203 YFATGSADALVSLWDVDELICERCISRLD-WPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDR-VW----------EI 269 (313)
T ss_pred eEeeccccceeeccChhHhhhheeecccc-CceEEEEecc-CcceeeccCccceEEeEecccCCe-EE----------Ee
Confidence 99999999999999999998888888765 5999999999 999999999999999999999862 11 11
Q ss_pred ccCCCcEEEEEeCCC
Q 007489 471 QEFPGEVIGLSFSPS 485 (601)
Q Consensus 471 ~~~~~~v~~i~~~p~ 485 (601)
.+.++...++|+|.
T Consensus 270 -~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 270 -PCEGPTFTVAWHPK 283 (313)
T ss_pred -eccCCceeEEecCC
Confidence 35688899999998
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.9e-28 Score=208.22 Aligned_cols=295 Identities=15% Similarity=0.178 Sum_probs=225.3
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC-CCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND-GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
..+..|.+++.+.+|++||.++++|+.|..|+|+|++..-..... .+.......+-..+.++..|..+|..+.|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH---- 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH---- 181 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec----
Confidence 345679999999999999999999999999999998843221111 111122222233467889999999999999
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|... +|++|+.|++|+++|.........+..
T Consensus 182 -----Pre~------------------------ILiS~srD~tvKlFDfsK~saKrA~K~-------------------- 212 (430)
T KOG0640|consen 182 -----PRET------------------------ILISGSRDNTVKLFDFSKTSAKRAFKV-------------------- 212 (430)
T ss_pred -----chhh------------------------eEEeccCCCeEEEEecccHHHHHHHHH--------------------
Confidence 7776 999999999999999875221111110
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~ 309 (601)
.....++.++.|+|.|.+|+++ ....+++||+.+ .
T Consensus 213 -----------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T---~ 248 (430)
T KOG0640|consen 213 -----------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT---Y 248 (430)
T ss_pred -----------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccc---e
Confidence 0113679999999999999996 556889999987 5
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
++. +....-.+|...|+++.+++.+++.++++.||.|++||--+++++.++.... ....|.+..|..+|
T Consensus 249 Qcf--vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH---------~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 249 QCF--VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH---------GGSEVCSAVFTKNG 317 (430)
T ss_pred eEe--eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc---------CCceeeeEEEccCC
Confidence 554 3334556788999999999999999999999999999988899999987652 45679999999999
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccC--C--CceeEEEecCCCCCEEEEEeC-CCeEEEEEcCCCCcccchhcccC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLE--G--ASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHTF 464 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~--~~v~~l~~~p~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~ 464 (601)
+||.+.+.|..|++|.+.+++.+....... + ..-+...|+. ...+++.-.+ .+.+.-||..+.....
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~------- 389 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVA------- 389 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhh-------
Confidence 999999999999999999999876654331 1 1234456887 7777776653 5789999998765211
Q ss_pred CcCcccccCCCcEEEEEeCCC
Q 007489 465 VLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 465 ~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.--.+|.+.+..+.-+|.
T Consensus 390 ---l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 390 ---LLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred ---hcccCCCCCceEEEeCCC
Confidence 123479999999999997
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=236.84 Aligned_cols=250 Identities=18% Similarity=0.217 Sum_probs=195.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc--------------------------------c-------------
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------------------------------G------------- 68 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~--------------------------------~------------- 68 (601)
.|.+.||++.||+|| +||+|+.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999999 999999999999998754 0
Q ss_pred ---------------chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 69 ---------------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 69 ---------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
++++.+.||.+.|+.|.||. .++|++++.|.+|++|.+....+ +. .
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~C-----------------L~-~ 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKEC-----------------LK-V 405 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcce-----------------ee-E
Confidence 14556789999999999995 57899999999999999998775 44 4
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~ 213 (601)
..|.+.|+|++|. |.+. +++++|+.|+.+++|++...+
T Consensus 406 F~HndfVTcVaFn---------PvDD-----------------------ryFiSGSLD~KvRiWsI~d~~---------- 443 (712)
T KOG0283|consen 406 FSHNDFVTCVAFN---------PVDD-----------------------RYFISGSLDGKVRLWSISDKK---------- 443 (712)
T ss_pred EecCCeeEEEEec---------ccCC-----------------------CcEeecccccceEEeecCcCe----------
Confidence 5699999999998 6543 599999999999999987521
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~- 292 (601)
|-.|. .-..-|++++|+|||++.++
T Consensus 444 ---------------------------Vv~W~---------------------------Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 444 ---------------------------VVDWN---------------------------DLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ---------------------------eEeeh---------------------------hhhhhheeEEeccCCceEEEE
Confidence 11221 01266999999999999888
Q ss_pred EcCCccEEEEeecCCCCcceEEEee--ecCCcCccceeEEEEccC-CCeEEEEecCCcEEEEEcCCCceeeeeccCcccc
Q 007489 293 SDHVKPSLFELKKGKVGQGEWIINK--RQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH 369 (601)
Q Consensus 293 ~~~~~v~l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~s~d-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 369 (601)
+-+|.+++|+..... -..-+++.. ..-..+. .|+.+.|.|. ...+++.+.|..|+|||..+.+++..|++..
T Consensus 470 t~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~--- 544 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR--- 544 (712)
T ss_pred EeccEEEEEEccCCe-EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc---
Confidence 589999999987410 011111111 1111222 7999999984 3457788999999999998888999999864
Q ss_pred cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce
Q 007489 370 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~ 410 (601)
....-....|+.||++|++++.|..|+||+.+...
T Consensus 545 ------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 545 ------NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ------cCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 23344567899999999999999999999986544
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.4e-28 Score=243.51 Aligned_cols=276 Identities=18% Similarity=0.222 Sum_probs=217.3
Q ss_pred CEEeee--cCCcEEEEECCC------------CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeC
Q 007489 1 MLYSGS--SDGYIRSWDAKL------------GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS 65 (601)
Q Consensus 1 ~l~tg~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~ 65 (601)
.+|||+ .||.++||+.+. .+.+.++. .|.+.|.|+.|+||| +||+|++|+.|.||+.
T Consensus 27 ~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--------~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 27 KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--------DHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred eEecCCccccccceeeccccccchhhhhhcccchhheeec--------cccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 378999 999999998642 12334444 799999999999999 9999999999999988
Q ss_pred Cc-------c-----------chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCcccccee
Q 007489 66 RH-------G-----------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 127 (601)
Q Consensus 66 ~~-------~-----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 127 (601)
.. | +....+.+|.+.|..++|+|++.+|++++.|++|.+|+..+...
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--------------- 163 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--------------- 163 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee---------------
Confidence 72 1 24567889999999999999999999999999999999988764
Q ss_pred EEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCC
Q 007489 128 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP 207 (601)
Q Consensus 128 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~ 207 (601)
+..+.+|...|..+.|. |-|+ +|++-+.|++|++|+..+....+.
T Consensus 164 --~~vl~~H~s~VKGvs~D---------P~Gk------------------------y~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 164 --LKVLRGHQSLVKGVSWD---------PIGK------------------------YFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred --eeeeecccccccceEEC---------CccC------------------------eeeeecCCceEEEEEcccceeeEe
Confidence 88999999999999998 8888 999999999999999765332111
Q ss_pred CccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 007489 208 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 287 (601)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 287 (601)
...... .......+..+.|||||
T Consensus 209 It~pf~---------------------------------------------------------~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 209 ITKPFE---------------------------------------------------------ESPLTTFFLRLSWSPDG 231 (942)
T ss_pred eccchh---------------------------------------------------------hCCCcceeeecccCCCc
Confidence 110000 00113557788899999
Q ss_pred CEEEE--EcCC---ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC-----CC------------eEEEEecC
Q 007489 288 MLFAY--SDHV---KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-----SS------------QLIIAGHD 345 (601)
Q Consensus 288 ~~l~~--~~~~---~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d-----~~------------~l~~~~~d 345 (601)
++|++ +-.+ .+.|.+-. .|+.. ..+.+|..++.++.|+|- .+ .+|+|+.|
T Consensus 232 ~~las~nA~n~~~~~~~IieR~-------tWk~~-~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERG-------TWKVD-KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred CeecchhhccCCcceeEEEecC-------Cceee-eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 99998 3332 34444332 35554 567899999999999971 11 57899999
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~ 409 (601)
+.|.||.....+++...... ....|..++|||||..|.++|.||+|.++.++..
T Consensus 304 rSlSVW~T~~~RPl~vi~~l----------f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNL----------FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccEEEEecCCCCchhhhhhh----------hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99999998777766554432 5678999999999999999999999999998643
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8e-29 Score=230.92 Aligned_cols=320 Identities=17% Similarity=0.236 Sum_probs=243.0
Q ss_pred CEEeeecCCcEEEEECCCCc------eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc--chh
Q 007489 1 MLYSGSSDGYIRSWDAKLGY------EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG--TLL 71 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~--~~~ 71 (601)
+|.|||.||.|++|++.... .+.+|+ .|.++|+.++...+| .|+|++.|-+|++|+...+ -++
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme--------~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASME--------HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhh--------hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence 48999999999999985422 356666 799999999999999 9999999999999999877 578
Q ss_pred hhccccccceEEEEE-eCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc-ccccceeEEEeeccc
Q 007489 72 QAHSFHKGDVNALAA-APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTVAVPI 149 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~-s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~ 149 (601)
.++..|...|.|+++ .++...+++||.|+.|.+||++++..... ..........+. ++...|.+++..
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~-------~s~n~~t~~sl~sG~k~siYSLA~N--- 180 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV-------ASFNNVTVNSLGSGPKDSIYSLAMN--- 180 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh-------hhccccccccCCCCCccceeeeecC---
Confidence 899999999999999 77888999999999999999998732000 000011122333 788899999987
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
+.|. .+++||..+.|++||.++.+
T Consensus 181 ------~t~t------------------------~ivsGgtek~lr~wDprt~~-------------------------- 204 (735)
T KOG0308|consen 181 ------QTGT------------------------IIVSGGTEKDLRLWDPRTCK-------------------------- 204 (735)
T ss_pred ------Ccce------------------------EEEecCcccceEEecccccc--------------------------
Confidence 6665 99999999999999988633
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~ 308 (601)
.+.++. +|..+|.++..++||+.+++ ++|++|++|++..
T Consensus 205 ------------------------------------kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq--- 244 (735)
T KOG0308|consen 205 ------------------------------------KIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ--- 244 (735)
T ss_pred ------------------------------------ceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccc---
Confidence 334444 77899999999999988888 8999999999985
Q ss_pred CcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 309 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
..++ ..+..|...|.++..+|+-..+++|+.||.|..=|+.+. +....++ ...+|..+..+.
T Consensus 245 QrCl-----~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick------------~daPv~~l~~~~ 307 (735)
T KOG0308|consen 245 QRCL-----ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK------------EDAPVLKLHLHE 307 (735)
T ss_pred ccee-----eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec------------CCCchhhhhhcc
Confidence 5554 446677888999999999999999999999999999874 3333343 345566666664
Q ss_pred CCCEEEEEecCCeEEEEEcCCceEE-------------------------EEeeccCCCceeEEEecCCCCCEEEEEeCC
Q 007489 388 DGQWLAAVNCFGDVYIFNLEIQRQH-------------------------WFISRLEGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
+.+-+-+++.|+.|+-|...-.... .+++. +.++...+.-. |.+++++-...
T Consensus 308 ~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai~k~~mL~-dkRhVlTkDa~ 384 (735)
T KOG0308|consen 308 HDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAIKKHAMLN-DKRHVLTKDAK 384 (735)
T ss_pred ccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhhhhhhhhc-CcceEeeecCC
Confidence 4444456667777877765321110 01111 12344444455 78899999999
Q ss_pred CeEEEEEcCCCC
Q 007489 443 NQVYVFDVEAKQ 454 (601)
Q Consensus 443 g~v~vwd~~~~~ 454 (601)
|++.+||+-...
T Consensus 385 gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 385 GNVALWDILACV 396 (735)
T ss_pred CCEEEEEeeeee
Confidence 999999997654
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-27 Score=224.21 Aligned_cols=265 Identities=17% Similarity=0.164 Sum_probs=222.3
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccc-ccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKG 79 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~ 79 (601)
||+|. ...|.+|+..+++...... .++..|+++.|+++| .|+.|..+|.|.|||..+.+.+..+.+ |..
T Consensus 191 laVal-g~~vylW~~~s~~v~~l~~--------~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 191 LAVAL-GQSVYLWSASSGSVTELCS--------FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred EEEEe-cceEEEEecCCCceEEeEe--------cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence 44554 4489999999999776666 348899999999999 999999999999999999999999998 999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|-+++|+ +..+.+|+.|+.|..+|++..+. ....+.+|...|..+.|+ +|++
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~----------------~~~~~~~H~qeVCgLkws---------~d~~ 314 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQH----------------VVSTLQGHRQEVCGLKWS---------PDGN 314 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchh----------------hhhhhhcccceeeeeEEC---------CCCC
Confidence 99999998 77889999999999999998764 122478999999999999 8887
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
++++||.|..+.+||.....
T Consensus 315 ------------------------~lASGgnDN~~~Iwd~~~~~------------------------------------ 334 (484)
T KOG0305|consen 315 ------------------------QLASGGNDNVVFIWDGLSPE------------------------------------ 334 (484)
T ss_pred ------------------------eeccCCCccceEeccCCCcc------------------------------------
Confidence 99999999999999984311
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC-CCEEEEE---cCCccEEEEeecCCCCcceEEE
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS-GMLFAYS---DHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~---~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
.......|...|.+++|+|- ..+||+| .|+.|++|+... +..+
T Consensus 335 ---------------------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~---g~~i--- 381 (484)
T KOG0305|consen 335 ---------------------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT---GARI--- 381 (484)
T ss_pred ---------------------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC---CcEe---
Confidence 11223345688999999995 4678873 789999999986 4432
Q ss_pred eeecCCcCccceeEEEEccCCCeEEEEe--cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSSQLIIAG--HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
........|+++.|++..+.|+++. .++.|.||+..+.+.+..+.+ |...|..+++||||..++
T Consensus 382 ---~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-----------H~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 382 ---DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-----------HTSRVLYLALSPDGETIV 447 (484)
T ss_pred ---cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-----------CcceeEEEEECCCCCEEE
Confidence 2334466899999999998777654 467899999999999999998 999999999999999999
Q ss_pred EEecCCeEEEEEcCCc
Q 007489 394 AVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 394 s~~~dg~i~iwd~~~~ 409 (601)
+|+.|.++++|++-..
T Consensus 448 t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 TGAADETLRFWNLFDE 463 (484)
T ss_pred EecccCcEEeccccCC
Confidence 9999999999998664
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=234.83 Aligned_cols=272 Identities=15% Similarity=0.185 Sum_probs=199.2
Q ss_pred hhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCC-------------------------------CCCC-
Q 007489 72 QAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP-------------------------------NDGL- 118 (601)
Q Consensus 72 ~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~-------------------------------~~~~- 118 (601)
+.+. .|.+.|+++.||+||+|||+||.|+.|+||.+....... ....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4556 899999999999999999999999999999987711100 0000
Q ss_pred ---CCccc--------cceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 119 ---SSSEV--------IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 119 ---~~~~~--------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
..... .-.-.++..+.+|..+|..+.|+ .++ +|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS---------Kn~-------------------------fLLS 385 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS---------KNN-------------------------FLLS 385 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccc---------cCC-------------------------eeEe
Confidence 00000 00111345678899999999987 333 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
++.|.+|++|++.... .+
T Consensus 386 SSMDKTVRLWh~~~~~--------------------------------------------------------------CL 403 (712)
T KOG0283|consen 386 SSMDKTVRLWHPGRKE--------------------------------------------------------------CL 403 (712)
T ss_pred ccccccEEeecCCCcc--------------------------------------------------------------ee
Confidence 9999999999987522 11
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 268 VQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
..+ .|...|+|++|+| |.+|+++ +-|+++|||++.. .....| .....-|++++|+|||++.++|+.+
T Consensus 404 ~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W-------~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 404 KVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDW-------NDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred eEE--ecCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEee-------hhhhhhheeEEeccCCceEEEEEec
Confidence 121 3458899999999 5688888 6899999999974 222222 2223589999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCCceEEEEeeccCC-Cce
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLEG-ASV 423 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v 423 (601)
|.+++|+....++...+.... .......|. .|+.+.|.|... -+++.+.|..|+|||+........+..++. ..-
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~--~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRL--HNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred cEEEEEEccCCeEEEeeeEee--ccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 999999998777665554321 111112234 899999998543 577778899999999988777666766654 344
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 424 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
....|+. ||++|+++++|..|+||+.+...
T Consensus 550 ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 550 ISASFSS-DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeEcc-CCCEEEEeecCceEEEEeCCCCc
Confidence 5668999 99999999999999999986544
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=214.09 Aligned_cols=288 Identities=14% Similarity=0.138 Sum_probs=225.1
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchh----hh-------------c-cccccceEEEEEeCCCCEEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL----QA-------------H-SFHKGDVNALAAAPSHNRVFS 95 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~----~~-------------~-~~h~~~V~~l~~s~~~~~l~s 95 (601)
.|.-.|.+|+++|++ +.++++.+|+|.=|++.+|+.. .+ - +.|...|.+++.++||+||++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 799999999999999 9999999999999999887632 11 1 278899999999999999999
Q ss_pred EeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccc
Q 007489 96 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175 (601)
Q Consensus 96 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 175 (601)
|+.|..|.||+.++.+. +..+.+|.+.|.+++|. .+.
T Consensus 220 gg~d~~v~Iw~~~t~eh-----------------v~~~~ghr~~V~~L~fr----------~gt---------------- 256 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEH-----------------VKVFKGHRGAVSSLAFR----------KGT---------------- 256 (479)
T ss_pred cCCCceEEEecCcccch-----------------hhcccccccceeeeeee----------cCc----------------
Confidence 99999999999999885 67789999999999995 332
Q ss_pred ccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccC
Q 007489 176 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 255 (601)
Q Consensus 176 ~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~ 255 (601)
+.|++++.|..+++|++..+..
T Consensus 257 -------~~lys~s~Drsvkvw~~~~~s~--------------------------------------------------- 278 (479)
T KOG0299|consen 257 -------SELYSASADRSVKVWSIDQLSY--------------------------------------------------- 278 (479)
T ss_pred -------cceeeeecCCceEEEehhHhHH---------------------------------------------------
Confidence 4899999999999999886321
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc
Q 007489 256 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 334 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~ 334 (601)
.+...+|+..|..+....-++.+.+ +.|.++++|.+.. ..+ ..+.++.+.+-|++|-.
T Consensus 279 ------------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e---esq------lifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 279 ------------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE---ESQ------LIFRGGEGSIDCVAFIN 337 (479)
T ss_pred ------------HHHHhCCccceeeechhcccceEEeccccceeEEEeccc---cce------eeeeCCCCCeeeEEEec
Confidence 1222345677888877777888888 5999999999954 222 22445567888999864
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccc-cCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc----
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR-EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ---- 409 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~---- 409 (601)
...+++|+.+|.|.+|++...+++.+.......... ....++.+|++++..|...++|+|+.+|.|++|-+..+
T Consensus 338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 457899999999999999988888777654332221 11223469999999999999999999999999999877
Q ss_pred eEEEEeeccCCCceeEEEecCCCCCEEEEE-eCCCeEEEE
Q 007489 410 RQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSNQVYVF 448 (601)
Q Consensus 410 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~-~~dg~v~vw 448 (601)
.+...++ +. +-|++++|++ +++.|++| +....+--|
T Consensus 417 ~~l~~ls-~~-GfVNsl~f~~-sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 417 NLLYSLS-LV-GFVNSLAFSN-SGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ceeeecc-cc-cEEEEEEEcc-CCCEEEEeccccccccee
Confidence 2333333 22 5899999999 99877666 334433333
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.8e-27 Score=208.18 Aligned_cols=282 Identities=14% Similarity=0.186 Sum_probs=234.1
Q ss_pred ceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCC
Q 007489 37 ELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN 115 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 115 (601)
...+.++...|.. .+++|+.|..+.++|..+++.+..++||...|+.+.|+++...+++++.|-.|++|.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 4568888888875 899999999999999999999999999999999999999999999999999999999877664
Q ss_pred CCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEE
Q 007489 116 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 195 (601)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~ 195 (601)
....+.|...|+.+..+ |.|. +|++++.|++..
T Consensus 296 --------------~~~~~~h~~~V~~ls~h---------~tge------------------------YllsAs~d~~w~ 328 (506)
T KOG0289|consen 296 --------------PTSSRPHEEPVTGLSLH---------PTGE------------------------YLLSASNDGTWA 328 (506)
T ss_pred --------------ccccccccccceeeeec---------cCCc------------------------EEEEecCCceEE
Confidence 56778999999999998 8876 999999999999
Q ss_pred EEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe-cC
Q 007489 196 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS-KA 274 (601)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 274 (601)
+.|+++...+ ..... ..
T Consensus 329 Fsd~~~g~~l--------------------------------------------------------------t~vs~~~s 346 (506)
T KOG0289|consen 329 FSDISSGSQL--------------------------------------------------------------TVVSDETS 346 (506)
T ss_pred EEEccCCcEE--------------------------------------------------------------EEEeeccc
Confidence 9998863211 11111 12
Q ss_pred CCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc
Q 007489 275 SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~ 353 (601)
+-.+++.+|+|||..+.+ ..|+.+++||+.. +..+ ..+++|.++|..|+|+.+|-+||++++|+.|++||+
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks---~~~~-----a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS---QTNV-----AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCC---cccc-----ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 356899999999999999 5899999999986 2232 668899999999999999999999999999999999
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE--EEEeeccCCCceeEEEecCC
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ--HWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~ 431 (601)
+..+..+++.-. ....+.++.|.+.|++|+.++.|=.|++++-.+... ...+. .|.+..+.+.|..
T Consensus 419 RKl~n~kt~~l~----------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~- 486 (506)
T KOG0289|consen 419 RKLKNFKTIQLD----------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGE- 486 (506)
T ss_pred hhhcccceeecc----------ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-hcccccceeeecc-
Confidence 988877777653 334799999999999999998876666666444333 22233 2345789999998
Q ss_pred CCCEEEEEeCCCeEEEEEc
Q 007489 432 NNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 432 ~~~~l~~~~~dg~v~vwd~ 450 (601)
..+++++++.|..++++.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999988865
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=7e-27 Score=194.68 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=214.2
Q ss_pred hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
.+.+|+.+++.+.++.+|.+|++++.|.+..+|-..+++. +..+.+|+..|+++.+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------lGty~GHtGavW~~Did------ 61 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------LGTYDGHTGAVWCCDID------ 61 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------eeeecCCCceEEEEEec------
Confidence 3678999999999999999999999999999998877774 89999999999999986
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
-+.+ .+++|+.|.++++||.++.+.
T Consensus 62 ---~~s~------------------------~liTGSAD~t~kLWDv~tGk~---------------------------- 86 (327)
T KOG0643|consen 62 ---WDSK------------------------HLITGSADQTAKLWDVETGKQ---------------------------- 86 (327)
T ss_pred ---CCcc------------------------eeeeccccceeEEEEcCCCcE----------------------------
Confidence 4554 999999999999999987432
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc------CCccEEEEeecC
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD------HVKPSLFELKKG 306 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~v~l~~~~~~ 306 (601)
+..++. ...|..+.|+++|++++.+. .+.|.+|+++..
T Consensus 87 ----------------------------------la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 87 ----------------------------------LATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred ----------------------------------EEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 112222 26688899999998887753 356889999852
Q ss_pred C----CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCee
Q 007489 307 K----VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 307 ~----~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 381 (601)
. ...++ ..++.+...++.+.|.|-+++|++|..||.|.+||+.+|+ .+..-.. |...|+
T Consensus 131 ~~~~~s~ep~-----~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-----------h~~~In 194 (327)
T KOG0643|consen 131 SSDIDSEEPY-----LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-----------HSSKIN 194 (327)
T ss_pred hhhhcccCce-----EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-----------hccccc
Confidence 2 12222 3345556789999999999999999999999999999885 4444444 888999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEE--EEcCCCCccc-c
Q 007489 382 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYV--FDVEAKQLGE-W 458 (601)
Q Consensus 382 ~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~v--wd~~~~~~~~-~ 458 (601)
.|.+|||..++++++.|.+-++||..+.+.+.+...- .+|++.+++| ..+.++.++.....-| =+.+.++... +
T Consensus 195 d~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te--~PvN~aaisP-~~d~VilgGGqeA~dVTTT~~r~GKFEArF 271 (327)
T KOG0643|consen 195 DLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE--RPVNTAAISP-LLDHVILGGGQEAMDVTTTSTRAGKFEARF 271 (327)
T ss_pred cccccCCcceEEecccCccceeeeccceeeEEEeeec--ccccceeccc-ccceEEecCCceeeeeeeecccccchhhhH
Confidence 9999999999999999999999999999887776543 5899999999 7777777654322212 1222222111 0
Q ss_pred hhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 459 SMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
-..-...-...+.+|-++|.+++|+|+
T Consensus 272 yh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 272 YHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred HHHHHHHHhccccccccCcceeEECCC
Confidence 000001123467889999999999999
No 90
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2e-26 Score=208.60 Aligned_cols=374 Identities=16% Similarity=0.221 Sum_probs=256.4
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
+++. -.|-+..|+.+.+...++-..- .+....-|.||+|.++|.+++|+++|.|.||+..+.+..+....|.+.|
T Consensus 216 iit~-Gk~H~~Fw~~~~~~l~k~~~~f----ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 216 IITC-GKGHLYFWTLRGGSLVKRQGIF----EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGV 290 (626)
T ss_pred EEEe-CCceEEEEEccCCceEEEeecc----ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCce
Confidence 3444 4578999999988777665421 1133478999999999999999999999999998777776666999999
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCC----------cccc------ceeEEe--------cCccccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS----------SEVI------KKWIYV--------GSVRAHT 137 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~----------~~~~------~~~~~~--------~~~~~h~ 137 (601)
.+++...+|..| +|+.|+.|..||-.-......+ +.+ .... ..+... ....+|.
T Consensus 291 ~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~e-lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~ 368 (626)
T KOG2106|consen 291 FSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETE-LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG 368 (626)
T ss_pred EEEEEecCccEe-ecCccceEEecccccccccccc-CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc
Confidence 999999998755 5999999999993332221111 100 0000 000000 1123455
Q ss_pred cceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcc
Q 007489 138 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 217 (601)
Q Consensus 138 ~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 217 (601)
.....++.. |+. +++++++.|+.+++|+-.... . .+.
T Consensus 369 delwgla~h---------ps~------------------------~q~~T~gqdk~v~lW~~~k~~-w---------t~~ 405 (626)
T KOG2106|consen 369 DELWGLATH---------PSK------------------------NQLLTCGQDKHVRLWNDHKLE-W---------TKI 405 (626)
T ss_pred cceeeEEcC---------CCh------------------------hheeeccCcceEEEccCCcee-E---------EEE
Confidence 555666655 444 499999999999999922211 1 111
Q ss_pred ceeeeeccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-Ec
Q 007489 218 PIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD 294 (601)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~ 294 (601)
....+.++.|+|.| .++.+. |..-+.+..+. .+.++... ..++++++|+|+|.+||+ +.
T Consensus 406 ~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~----------------~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 406 IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ----------------DLVTIHTD-NEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred ecCceeEeeccCcc-eEEEeeccceEEEEecccc----------------eeEEEEec-CCceEEEEEcCCCCEEEEecC
Confidence 22456688899999 555554 55555554432 35555555 789999999999999999 69
Q ss_pred CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccc-----
Q 007489 295 HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH----- 369 (601)
Q Consensus 295 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----- 369 (601)
|+.|+||.++. ++...-.+ ....+ .+|+.+.||+|+++|.+-+.|-.|..|.....+.....+...-..
T Consensus 468 d~~iyiy~Vs~--~g~~y~r~--~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~l 541 (626)
T KOG2106|consen 468 DNHIYIYRVSA--NGRKYSRV--GKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTL 541 (626)
T ss_pred CCeEEEEEECC--CCcEEEEe--eeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEE
Confidence 99999999986 34443212 22223 799999999999999999999999999533222111111000000
Q ss_pred --cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEe--eccCCCceeEEEecCCCCCEEEEEeCCCeE
Q 007489 370 --DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRLEGASVTAAGFPPQNNNVLIITTSSNQV 445 (601)
Q Consensus 370 --~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v 445 (601)
..-...+...|..++-|.+.++||+|+..|.|++|...-.+..... ...|++.|++++|.. +...|++.+.|..|
T Consensus 542 GF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si 620 (626)
T KOG2106|consen 542 GFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC-KDSHLISTGKDTSI 620 (626)
T ss_pred EEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee-CCceEEecCCCceE
Confidence 0000126667888888999999999999999999987544332222 224668899999999 77888888899999
Q ss_pred EEEEc
Q 007489 446 YVFDV 450 (601)
Q Consensus 446 ~vwd~ 450 (601)
..|++
T Consensus 621 ~qW~l 625 (626)
T KOG2106|consen 621 MQWRL 625 (626)
T ss_pred EEEEe
Confidence 99987
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=200.37 Aligned_cols=279 Identities=18% Similarity=0.203 Sum_probs=210.5
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCc-cchh-hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~-~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
.-++.|.+|+|||.. .+++++.||+||+|+++. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 567889999999944 777999999999999986 4444 445579999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
+ ...+..|...|+.+.|. +... ...|++|+.
T Consensus 105 Q------------------~~~v~~Hd~pvkt~~wv---------~~~~----------------------~~cl~TGSW 135 (347)
T KOG0647|consen 105 Q------------------VSQVAAHDAPVKTCHWV---------PGMN----------------------YQCLVTGSW 135 (347)
T ss_pred C------------------eeeeeecccceeEEEEe---------cCCC----------------------cceeEeccc
Confidence 7 67888999999999996 2211 238999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|.+|+.||.+....+.... .| ..+.++..-..-..++++++.|.+|++...... ..++
T Consensus 136 DKTlKfWD~R~~~pv~t~~---LP-----eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te--------------~k~~ 193 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPVATLQ---LP-----ERVYAADVLYPMAVVATAERHIAVYNLENPPTE--------------FKRI 193 (347)
T ss_pred ccceeecccCCCCeeeeee---cc-----ceeeehhccCceeEEEecCCcEEEEEcCCCcch--------------hhhh
Confidence 9999999999644332222 12 233444444455677788899999999755432 2222
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC-CcceEEEeeecCC--cCccceeEEEEccCCCeEEEEecCC
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV-GQGEWIINKRQLP--RKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
..+-.-.++|++...|.+..+. +-+|.+.+..++.... ..-.++..+..-. +..-.|++|+|+|....|++++.||
T Consensus 194 ~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 194 ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 2333466889999888876666 7899999999986222 1222223322111 1122688999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
+..+||-.....+++... |..+|++.+|+.+|.++|.+
T Consensus 274 tf~FWDkdar~kLk~s~~-----------~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 274 TFSFWDKDARTKLKTSET-----------HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEEecchhhhhhhccCc-----------CCCccceeEecCCCCEEEEE
Confidence 999999876666776666 89999999999999998865
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=197.87 Aligned_cols=272 Identities=20% Similarity=0.311 Sum_probs=211.9
Q ss_pred EEeeecCCcEEEEECCCCc----eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccc
Q 007489 2 LYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF 76 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 76 (601)
|++|+....|.=+++.--. .-.++....--....|.+.|++|+. +| ++|||+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 6888888777777653211 0111110001112389999999998 47 999999999999999999999999999
Q ss_pred cccceEEEEEeCCCC--EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 77 HKGDVNALAAAPSHN--RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 77 h~~~V~~l~~s~~~~--~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
|.+.|+++.|.+.-. .|++|+.||.|.+|+... |.++..+++|.+.|+.++++
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-----------------W~~~~slK~H~~~Vt~lsiH-------- 136 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-----------------WELLKSLKAHKGQVTDLSIH-------- 136 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCC-----------------eEEeeeecccccccceeEec--------
Confidence 999999999998664 899999999999999866 77899999999999999999
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|.++ +.++.|.|+.++.|++-....-
T Consensus 137 -PS~K------------------------LALsVg~D~~lr~WNLV~Gr~a----------------------------- 162 (362)
T KOG0294|consen 137 -PSGK------------------------LALSVGGDQVLRTWNLVRGRVA----------------------------- 162 (362)
T ss_pred -CCCc------------------------eEEEEcCCceeeeehhhcCccc-----------------------------
Confidence 8887 9999999999999998763210
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.+..+ . .....+.|+|.|.+++.+....|-+|.+.. ...+
T Consensus 163 -------------------------------~v~~L--~--~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~---A~v~-- 202 (362)
T KOG0294|consen 163 -------------------------------FVLNL--K--NKATLVSWSPQGDHFVVSGRNKIDIYQLDN---ASVF-- 202 (362)
T ss_pred -------------------------------eeecc--C--CcceeeEEcCCCCEEEEEeccEEEEEeccc---HhHh--
Confidence 01111 1 223448899999999998888899999875 2221
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEE--ccCCCEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDGQWL 392 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spd~~~l 392 (601)
..+.. ...+.++.|- ++.+|++|..|+.|.+||..+..+...|.+ |...|..+.+ .|++.||
T Consensus 203 ---~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-----------H~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 203 ---REIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-----------HENRVKDIASYTNPEHEYL 266 (362)
T ss_pred ---hhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec-----------chhheeeeEEEecCCceEE
Confidence 11111 1345666664 567899999999999999998889999988 9999999984 5678899
Q ss_pred EEEecCCeEEEEEcCCce
Q 007489 393 AAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 393 as~~~dg~i~iwd~~~~~ 410 (601)
++++.||.|+|||++...
T Consensus 267 vTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEeccCceEEEEEccccc
Confidence 999999999999998764
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=213.54 Aligned_cols=280 Identities=13% Similarity=0.190 Sum_probs=209.7
Q ss_pred CCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 34 SGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
.||.+.|.|++=+|.. .++||+.||.|+|||+....++.++.+|.+.|..|++.. ..++++|.|.+|+.|.++..-
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p 140 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP 140 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc
Confidence 5999999999999988 799999999999999999999999999999999999986 778999999999999987632
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
..++.+ ...+..+... . ..+.++++|.
T Consensus 141 ------------------~~tilg-~s~~~gIdh~---------~------------------------~~~~FaTcGe- 167 (433)
T KOG0268|consen 141 ------------------LHTILG-KSVYLGIDHH---------R------------------------KNSVFATCGE- 167 (433)
T ss_pred ------------------ceeeec-cccccccccc---------c------------------------ccccccccCc-
Confidence 122111 1112222211 0 0125566554
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
.|.+||... .. .+..+.
T Consensus 168 -~i~IWD~~R-----------------------------------------------~~---------------Pv~sms 184 (433)
T KOG0268|consen 168 -QIDIWDEQR-----------------------------------------------DN---------------PVSSMS 184 (433)
T ss_pred -eeeeccccc-----------------------------------------------CC---------------ccceee
Confidence 355666543 11 111222
Q ss_pred ecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 272 SKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
.+ ...|.++.|+|... .|++ ++|+.|.|||++. ...+-.+. .. ..-+.|+|+|++-.+++|++|..++
T Consensus 185 wG-~Dti~svkfNpvETsILas~~sDrsIvLyD~R~---~~Pl~KVi-~~-----mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 185 WG-ADSISSVKFNPVETSILASCASDRSIVLYDLRQ---ASPLKKVI-LT-----MRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred cC-CCceeEEecCCCcchheeeeccCCceEEEeccc---CCccceee-ee-----ccccceecCccccceeeccccccce
Confidence 22 36789999999775 4555 5999999999997 33321111 11 1337899999888899999999999
Q ss_pred EEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 350 VVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 350 vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
.||+... .++..+.+ |.+.|.++.|||.|+-+++|+.|.+|+||.+..+.......+-.-..|.++.|
T Consensus 255 ~~DmR~l~~p~~v~~d-----------hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKD-----------HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY 323 (433)
T ss_pred ehhhhhhcccchhhcc-----------cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE
Confidence 9998654 35666666 99999999999999999999999999999998876543322111257999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 429 PPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 429 ~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
|. |.+++++|+.|+.|++|.....
T Consensus 324 S~-Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 324 SM-DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ec-cccEEEecCCCcceeeeecchh
Confidence 99 9999999999999999997644
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.3e-27 Score=199.79 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=213.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
.-+..|.+|.|+|.+ .|+.++.||.+++||+....+...++ |.+++++++|.+ ...+++|+.||.|+.+|++++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 457889999999888 88888899999999999886666666 899999999986 6779999999999999999987
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+..|...|+++..+ +... .+++||.|++
T Consensus 87 ----------------~~~igth~~~i~ci~~~---------~~~~------------------------~vIsgsWD~~ 117 (323)
T KOG1036|consen 87 ----------------EDQIGTHDEGIRCIEYS---------YEVG------------------------CVISGSWDKT 117 (323)
T ss_pred ----------------ceeeccCCCceEEEEee---------ccCC------------------------eEEEcccCcc
Confidence 45677899999999987 4332 8999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++||.+....... + .
T Consensus 118 ik~wD~R~~~~~~~--------------------------------------------------------------~--d 133 (323)
T KOG1036|consen 118 IKFWDPRNKVVVGT--------------------------------------------------------------F--D 133 (323)
T ss_pred EEEEeccccccccc--------------------------------------------------------------c--c
Confidence 99999985110000 0 0
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
....|.++..+ |..|++ +.+..+.+||++..+... + ..-....-.++++++-|++.-+++++-||.|.+=.
T Consensus 134 ~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~---q---~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 134 QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF---Q---RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cCceEEEEecc--CCEEEEeecCceEEEEEcccccchh---h---hccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 01346665543 455555 789999999998722211 1 11122233789999999888899999999998876
Q ss_pred cCCC----ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 353 VSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 353 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
++.. +....|+.|+..... ...-.+|++|+|+|-.+.||+|+.||.|.+||+.+.+....+..+. ..|.+++|
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~--~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~-~SI~slsf 282 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKD--TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE-TSISSLSF 282 (323)
T ss_pred cCCchHHhhhceeEEeeecccCC--ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-CceEEEEe
Confidence 6554 345667765432211 1123579999999999999999999999999999999887777764 47999999
Q ss_pred cCCCCCEEEEEeC
Q 007489 429 PPQNNNVLIITTS 441 (601)
Q Consensus 429 ~p~~~~~l~~~~~ 441 (601)
+. +|..||+++.
T Consensus 283 s~-dG~~LAia~s 294 (323)
T KOG1036|consen 283 SM-DGSLLAIASS 294 (323)
T ss_pred cc-CCCeEEEEec
Confidence 99 9999999974
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.3e-26 Score=183.54 Aligned_cols=295 Identities=14% Similarity=0.202 Sum_probs=215.6
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeC------Cccch---------hhhccccccceEEEEEeCCCCEEEEEeeC
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDS------RHGTL---------LQAHSFHKGDVNALAAAPSHNRVFSTGSD 99 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~------~~~~~---------~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 99 (601)
....|.+|+|+|.| ..+.|+...+.+|.-. ..+.. -.+-+.|.+.|.|.+|+|+|++|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 45679999999999 8889999888887643 22211 12335699999999999999999999999
Q ss_pred CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccccccc
Q 007489 100 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 100 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
.+|++..++...+.... ....+..|...|+.++|. .+..
T Consensus 111 k~ik~l~fn~dt~~~~g------------~dle~nmhdgtirdl~fl---------d~~~-------------------- 149 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATG------------HDLEFNMHDGTIRDLAFL---------DDPE-------------------- 149 (350)
T ss_pred ceEEEEecccccccccC------------cceeeeecCCceeeeEEe---------cCCC--------------------
Confidence 99999877765431111 124567789999999996 1111
Q ss_pred CCCCEEEEecC-CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 180 LGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 180 ~~~~~l~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
.++.+|+++|. |..|++-|-...+.+..
T Consensus 150 s~~~il~s~gagdc~iy~tdc~~g~~~~a--------------------------------------------------- 178 (350)
T KOG0641|consen 150 SGGAILASAGAGDCKIYITDCGRGQGFHA--------------------------------------------------- 178 (350)
T ss_pred cCceEEEecCCCcceEEEeecCCCCccee---------------------------------------------------
Confidence 12347777765 44777777655332221
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCc---CccceeEEEEcc
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPR---KLQFAHSMIFSY 334 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~s~ 334 (601)
..+|.+.|.++ ++=+|-++++ +.|.+|++||++. ..++-.+.. .+.+ ....|.+++..|
T Consensus 179 ------------~sghtghilal-yswn~~m~~sgsqdktirfwdlrv---~~~v~~l~~-~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 179 ------------LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV---NSCVNTLDN-DFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred ------------ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec---cceeeeccC-cccCCCcccceeEEEEECC
Confidence 11233445443 3445677888 6899999999986 333211111 1111 125789999999
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE--
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-- 412 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~-- 412 (601)
.|++|++|..|....+||++.++.++.|.+ |...|.++.|||...||.+++.|..|++-|++..-..
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~p-----------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHP-----------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCC-----------CccceeEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence 999999999999999999999999999999 9999999999999999999999999999999764221
Q ss_pred -EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 413 -WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 413 -~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
..+..-|...+..+.|+| ..-.+++.+.|.++.+|-+.
T Consensus 311 ~~~vv~ehkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 122223556788889999 66678889999999999764
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-27 Score=211.12 Aligned_cols=284 Identities=18% Similarity=0.164 Sum_probs=230.3
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
...+.|.+++|+|.. .+|+.++ -.+.|++..+.....++.-....|.+++|-.||++|++|+..|.|++||..+...
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 456789999999977 4554444 4699999998888888888889999999999999999999999999999666443
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
+..+.+|+.++....|+ |.+. ..+++|+.|+
T Consensus 103 -----------------LR~~~ah~apv~~~~f~---------~~d~-----------------------t~l~s~sDd~ 133 (487)
T KOG0310|consen 103 -----------------LRQLYAHQAPVHVTKFS---------PQDN-----------------------TMLVSGSDDK 133 (487)
T ss_pred -----------------HHHHhhccCceeEEEec---------ccCC-----------------------eEEEecCCCc
Confidence 67889999999999998 6654 4899999999
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.+++||+.+.. +.....
T Consensus 134 v~k~~d~s~a~---------------------------------------------------------------v~~~l~ 150 (487)
T KOG0310|consen 134 VVKYWDLSTAY---------------------------------------------------------------VQAELS 150 (487)
T ss_pred eEEEEEcCCcE---------------------------------------------------------------EEEEec
Confidence 99999998611 111233
Q ss_pred cCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 273 KASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
.|...|.|.+++|... .+++ |-||.|++||++. .+..+ ..-.|..+|..+.+-|.|+.+|+++. ..|+|
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~--~~~~v------~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS--LTSRV------VELNHGCPVESVLALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEecc--CCcee------EEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence 5678999999999765 5666 6999999999997 22222 22356779999999999999998874 46999
Q ss_pred EEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 351 VDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 351 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
||+.+| +.+..+.. |...|+|+++..++..|++|+.|+.|++||+.+.+....+. +. ++|.+|+.+
T Consensus 222 WDl~~G~qll~~~~~-----------H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~-~pvLsiavs 288 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFN-----------HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YP-GPVLSIAVS 288 (487)
T ss_pred EEecCCceehhhhhc-----------ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cc-cceeeEEec
Confidence 999855 45544444 88999999999999999999999999999998888776654 33 599999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 430 PQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
| +++.+++|..+|.+.+=+...++
T Consensus 289 ~-dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 289 P-DDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred C-CCceEEEecccceeeeehhhccc
Confidence 9 99999999999988887555443
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=203.03 Aligned_cols=294 Identities=15% Similarity=0.173 Sum_probs=231.5
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc------------c------chhhhccccccceEEEEEeCCCCEEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH------------G------TLLQAHSFHKGDVNALAAAPSHNRVFS 95 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~h~~~V~~l~~s~~~~~l~s 95 (601)
.|..++.+.+|+||| .+++|+.|..|+|.|++. | -.++++-.|..+|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 799999999999999 899999999999999861 1 134667789999999999999999999
Q ss_pred EeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccc
Q 007489 96 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175 (601)
Q Consensus 96 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 175 (601)
|+.|++|++||+....... ..........|+++.|+ |.|.
T Consensus 190 ~srD~tvKlFDfsK~saKr---------------A~K~~qd~~~vrsiSfH---------PsGe---------------- 229 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKR---------------AFKVFQDTEPVRSISFH---------PSGE---------------- 229 (430)
T ss_pred ccCCCeEEEEecccHHHHH---------------HHHHhhccceeeeEeec---------CCCc----------------
Confidence 9999999999997644210 11122336789999999 8886
Q ss_pred ccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccC
Q 007489 176 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 255 (601)
Q Consensus 176 ~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~ 255 (601)
+|+.|..-..+++||+++.+.+.... |
T Consensus 230 --------fllvgTdHp~~rlYdv~T~Qcfvsan-------------------P-------------------------- 256 (430)
T KOG0640|consen 230 --------FLLVGTDHPTLRLYDVNTYQCFVSAN-------------------P-------------------------- 256 (430)
T ss_pred --------eEEEecCCCceeEEeccceeEeeecC-------------------c--------------------------
Confidence 99999888899999999854322111 1
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcC-ccceeEEEEc
Q 007489 256 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRK-LQFAHSMIFS 333 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~s 333 (601)
..+|...|+++.+|+.|++.++ +.||.|+|||=-. ..++ ... -..| ...|++..|+
T Consensus 257 ---------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS---~rCv---~t~-~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 257 ---------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS---NRCV---RTI-GNAHGGSEVCSAVFT 314 (430)
T ss_pred ---------------ccccccceeEEEecCCccEEEEeccCCcEEeecccc---HHHH---HHH-HhhcCCceeeeEEEc
Confidence 1234688999999999999988 7999999998654 3343 111 1223 3578999999
Q ss_pred cCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceEE
Q 007489 334 YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQH 412 (601)
Q Consensus 334 ~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~~ 412 (601)
.+|+|+++.+.|..+++|.+.+++++.++.+... .+....-+...|.....|++.-+ ..+.+.-||..+....
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~------tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT------TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCceEEEEecCCc------ccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 9999999999999999999999999999887421 11222234556777777777655 3567999999998877
Q ss_pred EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 413 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 413 ~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
..+...|.+.+..+.-+| .+.-+++++.|..+++|--
T Consensus 389 ~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhcccCCCCCceEEEeCC-CCCceeeecccceeeeeee
Confidence 777777888999999999 9999999999999999953
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-26 Score=195.49 Aligned_cols=272 Identities=14% Similarity=0.173 Sum_probs=206.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcC--CCcEEEeeCCccchhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--TGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~--dg~i~vwd~~~~~~~~~~~~h 77 (601)
+|++++.|-+|+|||..+|+.++++. .++-.|..++|.... .++.++. |.+|+.-++.+.+.++.|.||
T Consensus 28 ~litss~dDsl~LYd~~~g~~~~ti~--------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH 99 (311)
T KOG1446|consen 28 LLITSSEDDSLRLYDSLSGKQVKTIN--------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGH 99 (311)
T ss_pred EEEEecCCCeEEEEEcCCCceeeEee--------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCC
Confidence 36788888899999999999999998 677789999998666 6666665 889999999999999999999
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
...|++|+.+|-+..+++++.|++|++||++..++ ...+.....+ ..||. |+
T Consensus 100 ~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----------------qg~l~~~~~p--i~AfD---------p~ 151 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----------------QGLLNLSGRP--IAAFD---------PE 151 (311)
T ss_pred CceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----------------ceEEecCCCc--ceeEC---------CC
Confidence 99999999999999999999999999999997665 3333332333 34555 77
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
|- +++++.....|++||++....-+-.
T Consensus 152 GL------------------------ifA~~~~~~~IkLyD~Rs~dkgPF~----------------------------- 178 (311)
T KOG1446|consen 152 GL------------------------IFALANGSELIKLYDLRSFDKGPFT----------------------------- 178 (311)
T ss_pred Cc------------------------EEEEecCCCeEEEEEecccCCCCce-----------------------------
Confidence 75 7777777779999999874321110
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
...+..+.....+.+.|||||++++.+ ..+.+++.|.-. |..+-...
T Consensus 179 -----------------------------tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~---G~~~~tfs 226 (311)
T KOG1446|consen 179 -----------------------------TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD---GTVKSTFS 226 (311)
T ss_pred -----------------------------eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC---CcEeeeEe
Confidence 001111223668889999999998885 666778888765 44332222
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
...... .--....|+||++++++|+.||+|.+|+++++..+..+.+. +..++.++.|+|.-.++++++
T Consensus 227 ~~~~~~--~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----------~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 227 GYPNAG--NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----------NGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred eccCCC--CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC----------CCCCccccccCCceeeeeecC
Confidence 111111 11157789999999999999999999999999999999875 678899999999877777665
Q ss_pred cCCeEEEEEcC
Q 007489 397 CFGDVYIFNLE 407 (601)
Q Consensus 397 ~dg~i~iwd~~ 407 (601)
..+.+|=..
T Consensus 295 --s~l~fw~p~ 303 (311)
T KOG1446|consen 295 --SNLVFWLPD 303 (311)
T ss_pred --ceEEEEecc
Confidence 457777544
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-27 Score=221.34 Aligned_cols=274 Identities=13% Similarity=0.160 Sum_probs=225.4
Q ss_pred EEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCcc
Q 007489 43 LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 122 (601)
Q Consensus 43 v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 122 (601)
+.|+..+.|+.| ....|.+|+..++........+...|+++.|+++|++|+.|..+|.|.|||....+.
T Consensus 183 ldWss~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------- 251 (484)
T KOG0305|consen 183 LDWSSANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------- 251 (484)
T ss_pred hhcccCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc----------
Confidence 466655555544 345799999999986666666689999999999999999999999999999988765
Q ss_pred ccceeEEecCccc-cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc
Q 007489 123 VIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 201 (601)
Q Consensus 123 ~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~ 201 (601)
...+.. |...|-+++|. + ..+.+|+.|+.|..+|++.
T Consensus 252 -------~~~~~~~h~~rvg~laW~-----------~------------------------~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 252 -------TRTLRGSHASRVGSLAWN-----------S------------------------SVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred -------cccccCCcCceeEEEecc-----------C------------------------ceEEEecCCCcEEEEEEec
Confidence 566677 99999999985 1 3899999999999999886
Q ss_pred cCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEE
Q 007489 202 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 281 (601)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 281 (601)
.+... .....|...|..+
T Consensus 290 ~~~~~--------------------------------------------------------------~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 290 SQHVV--------------------------------------------------------------STLQGHRQEVCGL 307 (484)
T ss_pred chhhh--------------------------------------------------------------hhhhcccceeeee
Confidence 32111 1123456789999
Q ss_pred EEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEe--cCCcEEEEEcCCCc
Q 007489 282 TISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAG--HDRRIYVVDVSSSE 357 (601)
Q Consensus 282 ~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~--~dg~i~vwd~~~~~ 357 (601)
.|++|++++|+ +.|+.+.|||... ...+ ..+..|...|.+++|+| ....||+|+ .|+.|++||..+++
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~---~~p~-----~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLS---PEPK-----FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCC---cccc-----EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 99999999999 7999999999954 2222 55678899999999999 566888875 48999999999999
Q ss_pred eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE--ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCE
Q 007489 358 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV--NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 435 (601)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 435 (601)
.+..+. ....|..|.|++..+-|+++ ..++.|.||+..+.+....+.. |...|..++++| |+..
T Consensus 380 ~i~~vd------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~~RVl~la~SP-dg~~ 445 (484)
T KOG0305|consen 380 RIDSVD------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HTSRVLYLALSP-DGET 445 (484)
T ss_pred Eecccc------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-CcceeEEEEECC-CCCE
Confidence 988887 57889999999998766653 4677899999999888877764 667899999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCC
Q 007489 436 LIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 436 l~~~~~dg~v~vwd~~~~ 453 (601)
+++|+.|.++++|++-..
T Consensus 446 i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecccCcEEeccccCC
Confidence 999999999999998764
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-26 Score=218.50 Aligned_cols=273 Identities=16% Similarity=0.204 Sum_probs=226.9
Q ss_pred CCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchh--hhccccccceEE-EEEeC-CCCEEEEEeeCCeEEEEEeccC
Q 007489 35 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL--QAHSFHKGDVNA-LAAAP-SHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~V~~-l~~s~-~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
+|...|..+++.+...+++++.||++++|+-...+.+ ..+.+|.+-|.+ +++-+ ++-.|++|+.|..|.+|.+.+.
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 8999999999887779999999999999998766554 346678888887 88886 5557999999999999999988
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
.. ...+.+|...|.++... .++ .++||+.
T Consensus 92 ~P-----------------~~~LkgH~snVC~ls~~---------~~~-------------------------~~iSgSW 120 (745)
T KOG0301|consen 92 EP-----------------LYTLKGHKSNVCSLSIG---------EDG-------------------------TLISGSW 120 (745)
T ss_pred Cc-----------------hhhhhccccceeeeecC---------CcC-------------------------ceEeccc
Confidence 75 88999999999999864 232 6999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
|.++++|...... ..
T Consensus 121 D~TakvW~~~~l~-----------------------------------------------------------------~~ 135 (745)
T KOG0301|consen 121 DSTAKVWRIGELV-----------------------------------------------------------------YS 135 (745)
T ss_pred ccceEEecchhhh-----------------------------------------------------------------cc
Confidence 9999999876521 11
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 271 KSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
..+|+..|.+++.-|++.++..+.|.+|++|.-. ..+ ..+.+|..-|+.+++-+++ .+++++.||.|++
T Consensus 136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~-----~~l-----~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPENTYVTGSADKTIKLWKGG-----TLL-----KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRL 204 (745)
T ss_pred cCCcchheeeeeecCCCcEEeccCcceeeeccCC-----chh-----hhhccchhheeeeEEecCC-CeEeecCCceEEE
Confidence 2245677888888888866666899999999653 233 6788999999999998875 4788999999999
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
|++ +|+.+.++.+ |+..|.++...+++..+++++.|++++||+.. .+...+. +++..|+++.+-+
T Consensus 205 w~~-~ge~l~~~~g-----------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHG-----------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLL 269 (745)
T ss_pred Eec-cCceeeeeec-----------cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEee
Confidence 998 6899999988 99999999998999999999999999999988 4443444 3445899999987
Q ss_pred CCCCEEEEEeCCCeEEEEEcC
Q 007489 431 QNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+++ +++|++||.|+||...
T Consensus 270 -NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 270 -NGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred -CCC-EEEeccCceEEEEEec
Confidence 665 8899999999999976
No 101
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.3e-26 Score=223.56 Aligned_cols=298 Identities=13% Similarity=0.203 Sum_probs=203.3
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccch----------h---hhccccccceEEEEEeC-CCCEEEEEeeCC
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL----------L---QAHSFHKGDVNALAAAP-SHNRVFSTGSDG 100 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~----------~---~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg 100 (601)
|-..|.....++++ .+++++.+.....|+...+.. . ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 44556666677786 778888777777777543321 1 23678999999999999 889999999999
Q ss_pred eEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccC
Q 007489 101 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 180 (601)
Q Consensus 101 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (601)
+|++|++..+.... .....+..+.+|...|.+++|+ |++.
T Consensus 99 tIkIWdi~~~~~~~----------~~~~~l~~L~gH~~~V~~l~f~---------P~~~--------------------- 138 (493)
T PTZ00421 99 TIMGWGIPEEGLTQ----------NISDPIVHLQGHTKKVGIVSFH---------PSAM--------------------- 138 (493)
T ss_pred EEEEEecCCCcccc----------ccCcceEEecCCCCcEEEEEeC---------cCCC---------------------
Confidence 99999997653200 0001134456677777777776 5432
Q ss_pred CCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCC
Q 007489 181 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGG 260 (601)
Q Consensus 181 ~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~ 260 (601)
++|++++.|+.|++||+.+
T Consensus 139 --~iLaSgs~DgtVrIWDl~t----------------------------------------------------------- 157 (493)
T PTZ00421 139 --NVLASAGADMVVNVWDVER----------------------------------------------------------- 157 (493)
T ss_pred --CEEEEEeCCCEEEEEECCC-----------------------------------------------------------
Confidence 2677777777777777653
Q ss_pred CCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEE
Q 007489 261 HASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI 340 (601)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~ 340 (601)
+..+ ..+..|...|.+++|+|++++|+
T Consensus 158 ------------------------------------------------g~~~-----~~l~~h~~~V~sla~spdG~lLa 184 (493)
T PTZ00421 158 ------------------------------------------------GKAV-----EVIKCHSDQITSLEWNLDGSLLC 184 (493)
T ss_pred ------------------------------------------------CeEE-----EEEcCCCCceEEEEEECCCCEEE
Confidence 1111 12334566789999999999999
Q ss_pred EEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCC-eeEEEEccCCCEEEEEe----cCCeEEEEEcCCceEEEEe
Q 007489 341 IAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP-ITKMFTSSDGQWLAAVN----CFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 341 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~spd~~~las~~----~dg~i~iwd~~~~~~~~~~ 415 (601)
+++.|+.|++||+++++.+.++.. |... +..+.|++++..|++++ .|+.|++||+.........
T Consensus 185 tgs~Dg~IrIwD~rsg~~v~tl~~-----------H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 185 TTSKDKKLNIIDPRDGTIVSSVEA-----------HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EecCCCEEEEEECCCCcEEEEEec-----------CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 999999999999999998888887 5543 45788999888887654 4789999999865432222
Q ss_pred eccC-CCceeEEEecCCCCCEEEEEe-CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC----CCC-
Q 007489 416 SRLE-GASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS----PSS- 488 (601)
Q Consensus 416 ~~~~-~~~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~----~~~- 488 (601)
...+ ...+....|++ ++++|++++ .|+.|++||+.++++... ..+ .+..++.+++|.|. .+.
T Consensus 254 ~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~---------~~~-~s~~~~~g~~~~pk~~~dv~~~ 322 (493)
T PTZ00421 254 VDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFC---------SSY-SSVEPHKGLCMMPKWSLDTRKC 322 (493)
T ss_pred eccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEE---------eec-cCCCCCcceEecccccccccce
Confidence 2222 24566677899 999999888 499999999998774221 011 23456788888886 111
Q ss_pred --CEEEEEcCceEEEEeCCCCCC
Q 007489 489 --SSVIIYSARAMCVIDFGRPVD 509 (601)
Q Consensus 489 --~~~~~~~~~~~~~~~~~~~~~ 509 (601)
.+++--..+.+.-+.+-.|..
T Consensus 323 Ei~r~~~l~~~~i~pis~~vpRk 345 (493)
T PTZ00421 323 EIARFYALTYHSLYTIQMLLPRK 345 (493)
T ss_pred eeeEEEEecCCeEEEEEEEeccC
Confidence 122222455565555555544
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=201.87 Aligned_cols=301 Identities=16% Similarity=0.188 Sum_probs=232.1
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
||.+.||.++..... .+.+++.|.+.+||.+++|.++.++.+|.+.|+++.|++.+.++++++.|++..||...-.-..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 899999999987665 8889999999999999999999999999999999999999999999999999999973221110
Q ss_pred CC----------CCC-----------C--CccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccc
Q 007489 114 PN----------DGL-----------S--SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 170 (601)
Q Consensus 114 ~~----------~~~-----------~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 170 (601)
+. +.+ . .......-+++..+.+|...|.+..|. ..|
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL---------~gg------------ 284 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL---------AGG------------ 284 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh---------cCc------------
Confidence 00 000 0 001112334455566666666666664 333
Q ss_pred cccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccC
Q 007489 171 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 250 (601)
Q Consensus 171 ~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~ 250 (601)
..+++++.|.+-.+||.++..
T Consensus 285 ------------~Q~vTaSWDRTAnlwDVEtge----------------------------------------------- 305 (481)
T KOG0300|consen 285 ------------QQMVTASWDRTANLWDVETGE----------------------------------------------- 305 (481)
T ss_pred ------------ceeeeeeccccceeeeeccCc-----------------------------------------------
Confidence 488899999988888888632
Q ss_pred CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeE
Q 007489 251 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHS 329 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (601)
+.....+|+...+.++-+|..+++++ +.|.+.++||++. ... ....+.+|...|++
T Consensus 306 ----------------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe---aI~----sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 306 ----------------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE---AIQ----SVAVFQGHTDTVTS 362 (481)
T ss_pred ----------------eeccccCcchhccccccCCcceEEEEeccCceeEeccchh---hcc----eeeeecccccceeE
Confidence 22334456677888888899898888 7899999999985 222 12567899999999
Q ss_pred EEEccCCCeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 330 MIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 330 i~~s~d~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
+.|..|. .+++|+.|.+|+|||+.+.. ++.++. ...+++.++.|..+..||.--.+..|++||+.+
T Consensus 363 ~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR------------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 363 VVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR------------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred EEEecCC-ceeecCCCceEEEeeeccccCcceeee------------cCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 9998766 68899999999999997654 667776 577899999999999999999999999999988
Q ss_pred ceEEEEee----ccCCCceeEEEecCCCC--CEEEEEeCCCeEEEEEcCCC
Q 007489 409 QRQHWFIS----RLEGASVTAAGFPPQNN--NVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 409 ~~~~~~~~----~~~~~~v~~l~~~p~~~--~~l~~~~~dg~v~vwd~~~~ 453 (601)
.+.. .++ ..|..-|++++|.. +. .-|++++.|..+.-|++...
T Consensus 430 ~Rla-RlPrtsRqgHrRMV~c~AW~e-ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 430 NRLA-RLPRTSRQGHRRMVTCCAWLE-EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred Cccc-cCCcccccccceeeeeeeccc-cCcccccccccccceeeeeEeccc
Confidence 7654 233 23556799999985 32 34889999999999998753
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.1e-28 Score=210.01 Aligned_cols=266 Identities=12% Similarity=0.176 Sum_probs=211.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
+|+|+.||.|+|||+.+..++.++. .|.+.|..+++.. +.+++++.|.+|+.|-+. +.++.++.+ ...+
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~f~--------AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~ 150 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRTFK--------AHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVY 150 (433)
T ss_pred hhccccCceEEEEehhhhhhhheee--------cccCceeeEEecc-cceEEecCCcceeeeecc-CCcceeeec-cccc
Confidence 6899999999999999999999999 8999999999986 789999999999999987 566677665 5567
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
+.+.-+..+..++|+|. .|.|||...... +..+.--...|.++.|+ |...
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P-----------------v~smswG~Dti~svkfN---------pvET-- 200 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNP-----------------VSSMSWGADSISSVKFN---------PVET-- 200 (433)
T ss_pred cccccccccccccccCc--eeeecccccCCc-----------------cceeecCCCceeEEecC---------CCcc--
Confidence 77877777888999985 599999977664 55666667788888887 6554
Q ss_pred ccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCee
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 241 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 241 (601)
.+|++|+.|+.|.+||+++...+..
T Consensus 201 ---------------------sILas~~sDrsIvLyD~R~~~Pl~K---------------------------------- 225 (433)
T KOG0268|consen 201 ---------------------SILASCASDRSIVLYDLRQASPLKK---------------------------------- 225 (433)
T ss_pred ---------------------hheeeeccCCceEEEecccCCccce----------------------------------
Confidence 5899999999999999987432221
Q ss_pred EEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecC
Q 007489 242 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQL 320 (601)
Q Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~ 320 (601)
+.. ....+.++|+|.+-.+++ ..|..++.||++.- ... ....
T Consensus 226 ----------------------------Vi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l--~~p-----~~v~ 268 (433)
T KOG0268|consen 226 ----------------------------VIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL--SRP-----LNVH 268 (433)
T ss_pred ----------------------------eee--eccccceecCccccceeeccccccceehhhhhh--ccc-----chhh
Confidence 111 133567889997655555 68999999999861 111 2456
Q ss_pred CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe
Q 007489 321 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 400 (601)
Q Consensus 321 ~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~ 400 (601)
.+|.+.|.++.|||.|+-+++|+.|.+|+||....+.....+... -...|.++.||.|.+|+++||.|+.
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk----------RMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK----------RMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh----------hhheeeEEEEeccccEEEecCCCcc
Confidence 788899999999999999999999999999999876543333321 2456999999999999999999999
Q ss_pred EEEEEcCCce
Q 007489 401 VYIFNLEIQR 410 (601)
Q Consensus 401 i~iwd~~~~~ 410 (601)
|++|.....+
T Consensus 339 vRlWka~Ase 348 (433)
T KOG0268|consen 339 VRLWKAKASE 348 (433)
T ss_pred eeeeecchhh
Confidence 9999865444
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=206.19 Aligned_cols=267 Identities=18% Similarity=0.210 Sum_probs=220.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
.++||+.|.++.++|..+++.+..++ ||...|..+.|+|+. .+++++.|-.|+||.............|.+
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~--------Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~ 304 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLK--------GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE 304 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhcc--------CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc
Confidence 36899999999999999999999998 999999999999999 899999999999999988888888889999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc--cccceeEEEeeccccCCCCCCc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~d 157 (601)
+|+.+..+|.|.||++++.|+...+.|++++.. +..... ..-.+.+.+|+ ||
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-----------------lt~vs~~~s~v~~ts~~fH---------pD 358 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-----------------LTVVSDETSDVEYTSAAFH---------PD 358 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcE-----------------EEEEeeccccceeEEeeEc---------CC
Confidence 999999999999999999999999999999863 221111 11247899998 99
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
|. +|.+|..|+.|++||+........
T Consensus 359 gL------------------------ifgtgt~d~~vkiwdlks~~~~a~------------------------------ 384 (506)
T KOG0289|consen 359 GL------------------------IFGTGTPDGVVKIWDLKSQTNVAK------------------------------ 384 (506)
T ss_pred ce------------------------EEeccCCCceEEEEEcCCcccccc------------------------------
Confidence 87 999999999999999986321111
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
+ .+|..+|..++|+.+|-|+++ ++|+.|++||++... . +.
T Consensus 385 --------------------------------F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n---~k 425 (506)
T KOG0289|consen 385 --------------------------------F-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---N---FK 425 (506)
T ss_pred --------------------------------C-CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---c---cc
Confidence 1 135688999999999999999 688889999999622 1 22
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc--CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV--SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
+..+... .++.++.|.+.|++|+.++.+=.|++++- .++..+..+.. |.+..+++.|..+.+++++
T Consensus 426 t~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-----------~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 426 TIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-----------HSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred eeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-----------cccccceeeecccceEEee
Confidence 2333332 27899999999999999987766666663 24556666666 8888999999999999999
Q ss_pred EecCCeEEEEEc
Q 007489 395 VNCFGDVYIFNL 406 (601)
Q Consensus 395 ~~~dg~i~iwd~ 406 (601)
++.|..++++.+
T Consensus 494 ~smd~~l~~~a~ 505 (506)
T KOG0289|consen 494 TSMDAILRLYAL 505 (506)
T ss_pred ccchhheEEeec
Confidence 999999888864
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-26 Score=207.48 Aligned_cols=266 Identities=20% Similarity=0.240 Sum_probs=209.5
Q ss_pred CEEeeecCCcEEEEECCCCceE-EEEEec-----cC---CCC-CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEI-YRITVG-----LG---GLG-SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT 69 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~-~~~~~~-----~~---~~~-~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~ 69 (601)
++.+++.||+|.-|++.+|+.. +.+..+ .+ ... ++|...|.+++.|+|| +||+|+.|..|.||+..+.+
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence 4678999999999999998865 222211 11 112 3899999999999999 99999999999999999999
Q ss_pred hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 70 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 70 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
.++.+++|.+.|.+++|-.....|++++.|+.|++|+++.... +.++.+|...|.++...
T Consensus 236 hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-----------------vetlyGHqd~v~~IdaL--- 295 (479)
T KOG0299|consen 236 HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-----------------VETLYGHQDGVLGIDAL--- 295 (479)
T ss_pred hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-----------------HHHHhCCccceeeechh---
Confidence 9999999999999999998888999999999999999998764 78899999999998864
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
.-++ .+-.|+.|.++++|++..-
T Consensus 296 ------~reR------------------------~vtVGgrDrT~rlwKi~ee--------------------------- 318 (479)
T KOG0299|consen 296 ------SRER------------------------CVTVGGRDRTVRLWKIPEE--------------------------- 318 (479)
T ss_pred ------cccc------------------------eEEeccccceeEEEecccc---------------------------
Confidence 2332 5566669999999998541
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG 309 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~ 309 (601)
..-+..++...+-|++|-.+..++..+++|.|.+|++.. .
T Consensus 319 -------------------------------------sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K---K 358 (479)
T KOG0299|consen 319 -------------------------------------SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK---K 358 (479)
T ss_pred -------------------------------------ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecc---c
Confidence 112223345778899998877777778999999999986 3
Q ss_pred cceEEEe--eecCCc-----CccceeEEEEccCCCeEEEEecCCcEEEEEcCCC----ceeeeeccCcccccccCCCCCC
Q 007489 310 QGEWIIN--KRQLPR-----KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS----ELLHTFTPCREEHDREIQPSEP 378 (601)
Q Consensus 310 ~~~~~~~--~~~~~~-----~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~ 378 (601)
..++... ....+. +..+|++++..|...++|+|+.+|.|++|.+.++ +++..+. ..+
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls------------~~G 426 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS------------LVG 426 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc------------ccc
Confidence 3333221 111111 1238999999999999999999999999999877 2334443 578
Q ss_pred CeeEEEEccCCCEEEEE
Q 007489 379 PITKMFTSSDGQWLAAV 395 (601)
Q Consensus 379 ~i~~l~~spd~~~las~ 395 (601)
.|++++|+++|++|++|
T Consensus 427 fVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 427 FVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEEEEEEccCCCEEEEe
Confidence 89999999999977766
No 106
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.9e-26 Score=222.61 Aligned_cols=259 Identities=16% Similarity=0.133 Sum_probs=189.6
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEec-c----CCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCcc------
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVG-L----GGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHG------ 68 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~-~----~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~~------ 68 (601)
+++++.+.....|+...|..+..+... . .....+|.+.|++++|+| ++ +|++|+.|++|++||+.++
T Consensus 35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI 114 (493)
T ss_pred cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc
Confidence 567777778888987655443322210 0 012358999999999999 77 8999999999999999765
Q ss_pred -chhhhccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEee
Q 007489 69 -TLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 146 (601)
Q Consensus 69 -~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 146 (601)
+++..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++.. ...+..|...|.+++|+
T Consensus 115 ~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-----------------~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 115 SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-----------------VEVIKCHSDQITSLEWN 177 (493)
T ss_pred CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-----------------EEEEcCCCCceEEEEEE
Confidence 2456788999999999999975 7999999999999999998764 56677899999999998
Q ss_pred ccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccc
Q 007489 147 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 226 (601)
Q Consensus 147 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (601)
|++. +|++++.|+.|++||+++...
T Consensus 178 ---------pdG~------------------------lLatgs~Dg~IrIwD~rsg~~---------------------- 202 (493)
T PTZ00421 178 ---------LDGS------------------------LLCTTSKDKKLNIIDPRDGTI---------------------- 202 (493)
T ss_pred ---------CCCC------------------------EEEEecCCCEEEEEECCCCcE----------------------
Confidence 8886 999999999999999886221
Q ss_pred cCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E----cCCccEEE
Q 007489 227 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S----DHVKPSLF 301 (601)
Q Consensus 227 ~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~----~~~~v~l~ 301 (601)
+..+..........+.|.+++..+++ + .++.|++|
T Consensus 203 ----------------------------------------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 203 ----------------------------------------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred ----------------------------------------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence 11111111122345667787766665 4 36899999
Q ss_pred EeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCe
Q 007489 302 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI 380 (601)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 380 (601)
|++.. ...+ .... ......+....|++++++|++++ .|+.|++||+.++++....... +..++
T Consensus 243 Dlr~~---~~p~--~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~----------s~~~~ 306 (493)
T PTZ00421 243 DTRKM---ASPY--STVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS----------SVEPH 306 (493)
T ss_pred eCCCC---CCce--eEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc----------CCCCC
Confidence 99852 2111 1111 12233556678999999999887 4999999999988876665432 45667
Q ss_pred eEEEEccC
Q 007489 381 TKMFTSSD 388 (601)
Q Consensus 381 ~~l~~spd 388 (601)
..++|.|.
T Consensus 307 ~g~~~~pk 314 (493)
T PTZ00421 307 KGLCMMPK 314 (493)
T ss_pred cceEeccc
Confidence 88888885
No 107
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4e-26 Score=224.46 Aligned_cols=246 Identities=14% Similarity=0.158 Sum_probs=178.6
Q ss_pred eeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC-C-eEEEEcCCCcEEEeeCCccc--------hhhh
Q 007489 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGT--------LLQA 73 (601)
Q Consensus 4 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-g-~l~s~~~dg~i~vwd~~~~~--------~~~~ 73 (601)
.|+.++.|++|+..+...+..+. +|...|++++|+|+ + .|++|+.||.|+|||+.++. ++..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~--------gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLK--------GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEc--------CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 47778899999987777777777 89999999999997 5 89999999999999997642 2345
Q ss_pred ccccccceEEEEEeCCCCEE-EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 74 HSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
+.+|...|.+++|+|++..+ ++++.|++|++||+.++.. ...+. |...|.+++|+
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-----------------~~~i~-~~~~V~Slsws------ 176 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-----------------AFQIN-MPKKLSSLKWN------ 176 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-----------------EEEEe-cCCcEEEEEEC------
Confidence 77899999999999998765 6899999999999988753 22222 45567788877
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+|. +|++++.|+.|++||+++..
T Consensus 177 ---pdG~------------------------lLat~s~D~~IrIwD~Rsg~----------------------------- 200 (568)
T PTZ00420 177 ---IKGN------------------------LLSGTCVGKHMHIIDPRKQE----------------------------- 200 (568)
T ss_pred ---CCCC------------------------EEEEEecCCEEEEEECCCCc-----------------------------
Confidence 7765 77777778888888876411
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcce
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~ 312 (601)
.+
T Consensus 201 ------------------------------------------------------------------------------~i 202 (568)
T PTZ00420 201 ------------------------------------------------------------------------------IA 202 (568)
T ss_pred ------------------------------------------------------------------------------EE
Confidence 00
Q ss_pred EEEeeecCCcCcc-----ceeEEEEccCCCeEEEEecCC----cEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeE
Q 007489 313 WIINKRQLPRKLQ-----FAHSMIFSYDSSQLIIAGHDR----RIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITK 382 (601)
Q Consensus 313 ~~~~~~~~~~~~~-----~v~~i~~s~d~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~ 382 (601)
..+.+|.+ .+....|++++.+|++++.++ +|+|||++. .+++..+.... +.+.+..
T Consensus 203 -----~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~---------~~~~L~p 268 (568)
T PTZ00420 203 -----SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN---------ASAPLIP 268 (568)
T ss_pred -----EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---------CccceEE
Confidence 00111111 112234678888998887764 799999984 55665554311 3344444
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc-CCCceeEEEecC
Q 007489 383 MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-EGASVTAAGFPP 430 (601)
Q Consensus 383 l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~l~~~p 430 (601)
...+++|.++++|+.|+.|++|++..+... .+..+ +..++.+++|.|
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~-~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGSIR-KVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCcEE-eecccccCCCccceEEcc
Confidence 445667899999999999999999877543 33333 346788999999
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=220.12 Aligned_cols=296 Identities=17% Similarity=0.236 Sum_probs=231.9
Q ss_pred CCceEEE---EEEEee-CC-eEEEEcCCCcEEEeeCCccc------hhhhccccccceEEEEEeCCCCEEEEEeeCCeEE
Q 007489 35 GPELCIW---SLLSLR-CG-TLVSADSTGSVQFWDSRHGT------LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 103 (601)
Q Consensus 35 ~h~~~V~---~v~~s~-~g-~l~s~~~dg~i~vwd~~~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 103 (601)
.|...|. ++..+. .+ +|.+|+.||.|++|+..... .+.++..|...|+.++...+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444555 555554 44 69999999999999985321 4788899999999999999999999999999999
Q ss_pred EEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEe-eccccCCCCCCcccccccCCCCccccccccccccCCC
Q 007489 104 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV-AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 182 (601)
Q Consensus 104 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (601)
+|+...+.. .+..+++.|.+.|.++++ . ++.
T Consensus 99 ~W~~~~~~~---------------~c~stir~H~DYVkcla~~a---------k~~------------------------ 130 (735)
T KOG0308|consen 99 VWNAHKDNT---------------FCMSTIRTHKDYVKCLAYIA---------KNN------------------------ 130 (735)
T ss_pred EeecccCcc---------------hhHhhhhcccchheeeeecc---------cCc------------------------
Confidence 999887631 126789999999999998 3 344
Q ss_pred CEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCC
Q 007489 183 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 262 (601)
Q Consensus 183 ~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 262 (601)
..++|||.|+.|++||++.......+. ...+
T Consensus 131 ~lvaSgGLD~~IflWDin~~~~~l~~s----------------------------~n~~--------------------- 161 (735)
T KOG0308|consen 131 ELVASGGLDRKIFLWDINTGTATLVAS----------------------------FNNV--------------------- 161 (735)
T ss_pred eeEEecCCCccEEEEEccCcchhhhhh----------------------------cccc---------------------
Confidence 399999999999999999743200000 0000
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEE
Q 007489 263 STSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~ 341 (601)
....+..++...|.+++.++.|..|+. +..+.+++||.++ ..++ ..+.+|...|..+..++||..+++
T Consensus 162 ---t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt---~~ki-----mkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 162 ---TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT---CKKI-----MKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred ---ccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc---ccce-----eeeeccccceEEEEEcCCCCeEee
Confidence 000111133578999999999988888 6889999999997 4443 446699999999999999999999
Q ss_pred EecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCC
Q 007489 342 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA 421 (601)
Q Consensus 342 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~ 421 (601)
++.||+|++||+...+++.++.. |...|+++..+|+-.++++|+.||.|..=|+.+......+.. ...
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~v-----------H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~da 298 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIV-----------HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDA 298 (735)
T ss_pred cCCCceEEeeeccccceeeeEEe-----------ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-CCC
Confidence 99999999999999999999998 888899999999999999999999999999988533223322 235
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+|..+..+. ..+-+-+++.|+.|.-|..+
T Consensus 299 Pv~~l~~~~-~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 299 PVLKLHLHE-HDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred chhhhhhcc-ccCCceeeeccccceecCCc
Confidence 788888886 44455778889999999865
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.8e-26 Score=195.39 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=199.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
.|++++.||++++||+........++ |..++.+++|.++..+++|+.||.|+.+|+.+++.. .+..|..+
T Consensus 27 ~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~ 96 (323)
T KOG1036|consen 27 DLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEG 96 (323)
T ss_pred cEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccCCceEEEeccCceEEEEEecCCcce-eeccCCCc
Confidence 47788899999999999887777775 999999999998889999999999999999977654 45569999
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
|.||.+++....+++||.|++|++||.+.... ...+ .....|.++...
T Consensus 97 i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-----------------~~~~-d~~kkVy~~~v~-------------- 144 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-----------------VGTF-DQGKKVYCMDVS-------------- 144 (323)
T ss_pred eEEEEeeccCCeEEEcccCccEEEEecccccc-----------------cccc-ccCceEEEEecc--------------
Confidence 99999999889999999999999999987442 2222 224478888763
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
++.|+.|+.|..+.+||+++..........
T Consensus 145 ---------------------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS----------------------------- 174 (323)
T KOG1036|consen 145 ---------------------GNRLVVGTSDRKVLIYDLRNLDEPFQRRES----------------------------- 174 (323)
T ss_pred ---------------------CCEEEEeecCceEEEEEcccccchhhhccc-----------------------------
Confidence 238999999999999999985533221100
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCccEEEEeecCCC-Ccc--eEEEe
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGKV-GQG--EWIIN 316 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~v~l~~~~~~~~-~~~--~~~~~ 316 (601)
.-...++|+++-|++. +++++-+|.|.+=.++..+. ..+ .++..
T Consensus 175 --------------------------------~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 175 --------------------------------SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred --------------------------------cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 0024577888888665 44447888887766654211 111 12222
Q ss_pred eecCCcC--ccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 317 KRQLPRK--LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 317 ~~~~~~~--~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
.....+. .-+|++|+|+|-...||+|+.||.|.+||+.+.+.+..|.. ....|..++|+.||..||+
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-----------~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-----------YETSISSLSFSMDGSLLAI 291 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-----------CCCceEEEEeccCCCeEEE
Confidence 1111111 12799999999999999999999999999998888888877 6778999999999999999
Q ss_pred Eec
Q 007489 395 VNC 397 (601)
Q Consensus 395 ~~~ 397 (601)
++.
T Consensus 292 a~s 294 (323)
T KOG1036|consen 292 ASS 294 (323)
T ss_pred Eec
Confidence 874
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=225.08 Aligned_cols=274 Identities=16% Similarity=0.234 Sum_probs=225.5
Q ss_pred CceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhh-ccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCC
Q 007489 36 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP 114 (601)
Q Consensus 36 h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~ 114 (601)
|...+.+..|. ++.+++++.+++|++||..++..+.. +.+|.+.|+++++..-+.+|++|+.|.++++||..++.+
T Consensus 207 ~~~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-- 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-- 283 (537)
T ss_pred Ccchhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--
Confidence 56678888888 77999999999999999999998888 999999999999998789999999999999999999986
Q ss_pred CCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeE
Q 007489 115 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 194 (601)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v 194 (601)
...+.+|...|+++... . ..+++|+.|.+|
T Consensus 284 ---------------~~~l~gh~stv~~~~~~-----------~------------------------~~~~sgs~D~tV 313 (537)
T KOG0274|consen 284 ---------------THSLQGHTSSVRCLTID-----------P------------------------FLLVSGSRDNTV 313 (537)
T ss_pred ---------------EEEecCCCceEEEEEcc-----------C------------------------ceEeeccCCceE
Confidence 88999999999999864 1 278888899999
Q ss_pred EEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecC
Q 007489 195 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 274 (601)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (601)
++|++.+
T Consensus 314 kVW~v~n------------------------------------------------------------------------- 320 (537)
T KOG0274|consen 314 KVWDVTN------------------------------------------------------------------------- 320 (537)
T ss_pred EEEeccC-------------------------------------------------------------------------
Confidence 9998763
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 275 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
+..+ ..+.+|..+|+++.++ +.++++|+.|++|++||..
T Consensus 321 ----------------------------------~~~l-----~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 321 ----------------------------------GACL-----NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred ----------------------------------cceE-----EEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 1111 2233477788999886 7899999999999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-eEEEEeeccCCCceeEEEecCCCC
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-RQHWFISRLEGASVTAAGFPPQNN 433 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~ 433 (601)
++++++++.+ |...|.++.+.+. .++++|+.|+.|++||+.+. ++..++.. |.+-+..+.+ .+
T Consensus 360 ~~~cl~sl~g-----------H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~-h~~~v~~l~~---~~ 423 (537)
T KOG0274|consen 360 TGKCLKSLSG-----------HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG-HTSLVSSLLL---RD 423 (537)
T ss_pred hceeeeeecC-----------CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC-Cccccccccc---cc
Confidence 9999999999 9999999998554 89999999999999999999 77766664 5556666665 56
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccccc-CCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 434 NVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE-FPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 434 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
++|++++.|++|++||.+.++. .+.+.+ |.+.|..+++.. ...+.......+.++|+..
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~-----------~~~~~~~~~~~v~~l~~~~---~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGEC-----------LRTLEGRHVGGVSALALGK---EEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ceeEeccccccEEEeecccCce-----------eeeeccCCcccEEEeecCc---ceEEEEecCCeeEEEeccc
Confidence 8999999999999999999884 445666 668888888861 2233334555555666543
No 111
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.2e-25 Score=220.96 Aligned_cols=256 Identities=10% Similarity=0.119 Sum_probs=174.7
Q ss_pred EEcCCCcEEEeeCCccchhhhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEec
Q 007489 53 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 131 (601)
Q Consensus 53 s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (601)
.|+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.|++|++|++.++..... .......
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------~i~~p~~ 119 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------EIKDPQC 119 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------ccccceE
Confidence 3667889999998877778889999999999999996 78999999999999999976431000 0000112
Q ss_pred CccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccC
Q 007489 132 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC 211 (601)
Q Consensus 132 ~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~ 211 (601)
.+.+|...|.+++|+ |++. .+|++++.|+.|++||
T Consensus 120 ~L~gH~~~V~sVaf~---------P~g~-----------------------~iLaSgS~DgtIrIWD------------- 154 (568)
T PTZ00420 120 ILKGHKKKISIIDWN---------PMNY-----------------------YIMCSSGFDSFVNIWD------------- 154 (568)
T ss_pred EeecCCCcEEEEEEC---------CCCC-----------------------eEEEEEeCCCeEEEEE-------------
Confidence 234455555555554 4332 1334455555555555
Q ss_pred CCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 007489 212 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 291 (601)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 291 (601)
T Consensus 155 -------------------------------------------------------------------------------- 154 (568)
T PTZ00420 155 -------------------------------------------------------------------------------- 154 (568)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccc
Q 007489 292 YSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR 371 (601)
Q Consensus 292 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 371 (601)
+.. +..+..+ . +...|.+++|+|+|++|++++.|+.|+|||+++++.+.++.+
T Consensus 155 -----------l~t---g~~~~~i-----~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g------- 207 (568)
T PTZ00420 155 -----------IEN---EKRAFQI-----N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI------- 207 (568)
T ss_pred -----------CCC---CcEEEEE-----e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec-------
Confidence 433 2111111 1 224689999999999999999999999999999999988887
Q ss_pred cCCCCCCCee-----EEEEccCCCEEEEEecCC----eEEEEEcCC-ceEEEEeeccCC--CceeEEEecCCCCCEEEEE
Q 007489 372 EIQPSEPPIT-----KMFTSSDGQWLAAVNCFG----DVYIFNLEI-QRQHWFISRLEG--ASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 372 ~~~~~~~~i~-----~l~~spd~~~las~~~dg----~i~iwd~~~-~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~~~ 439 (601)
|.+.+. ...|++++.+|++++.|+ .|+|||+.. .++...+. ++. ..+......+ ++.++++|
T Consensus 208 ----H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~-tg~l~lsG 281 (568)
T PTZ00420 208 ----HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDES-TGLIYLIG 281 (568)
T ss_pred ----ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCC-CCCEEEEE
Confidence 665443 234568999999988764 799999985 44443332 222 2223333344 78889999
Q ss_pred eCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 440 TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 440 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
..|+.|++|++..+.+.. ...+. +..+..+++|.|.
T Consensus 282 kGD~tIr~~e~~~~~~~~---------l~~~~-s~~p~~g~~f~Pk 317 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSIRK---------VNEYK-SCSPFRSFGFLPK 317 (568)
T ss_pred ECCCeEEEEEccCCcEEe---------ecccc-cCCCccceEEccc
Confidence 999999999998765322 11232 5578889999998
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.6e-26 Score=214.28 Aligned_cols=259 Identities=18% Similarity=0.247 Sum_probs=216.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEE-EEEee-CC-eEEEEcCCCcEEEeeCCccchhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS-LLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s~-~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h 77 (601)
.++++|.||++++|+-..++.+..... .+|.+.|.+ ++|-+ ++ +|++|+.|.+|.+|......++..+++|
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~------~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH 100 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAF------EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH 100 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceec------ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc
Confidence 378999999999999765555443221 178888887 88875 44 8999999999999999999999999999
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
...|.|+....++. ++|||.|.++++|..... ...+.+|+..|++++.- |+
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l-------------------~~~l~gH~asVWAv~~l---------~e 151 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL-------------------VYSLQGHTASVWAVASL---------PE 151 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecchhh-------------------hcccCCcchheeeeeec---------CC
Confidence 99999999888887 999999999999987764 34689999999999986 55
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
+ .+++|+.|.+|++|...+
T Consensus 152 ~-------------------------~~vTgsaDKtIklWk~~~------------------------------------ 170 (745)
T KOG0301|consen 152 N-------------------------TYVTGSADKTIKLWKGGT------------------------------------ 170 (745)
T ss_pred C-------------------------cEEeccCcceeeeccCCc------------------------------------
Confidence 4 799999999999998754
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEee
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
+.+....|...|+.+++-+++.++.++.||.|++|++. +..+
T Consensus 171 -----------------------------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~----ge~l----- 212 (745)
T KOG0301|consen 171 -----------------------------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD----GEVL----- 212 (745)
T ss_pred -----------------------------hhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc----Ccee-----
Confidence 11222346688999999999999999999999999995 4555
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
.+..+|.+-+.++....++..++++++|++++||+.. ++.+.+.- ....|+++.+-++|. |++|+.
T Consensus 213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-----------PttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-----------PTTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-----------CccceEEEEEeeCCC-EEEecc
Confidence 5678899999999988888899999999999999975 77777774 445899999888876 678889
Q ss_pred CCeEEEEEcC
Q 007489 398 FGDVYIFNLE 407 (601)
Q Consensus 398 dg~i~iwd~~ 407 (601)
||.|+||..+
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 9999999875
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.2e-27 Score=191.42 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=195.5
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc---chhhhccccccceEEEEEeC--CCCEEEEEeeCCeEEEEEec
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~ 108 (601)
.|++.|..+...--| +|+++++|++|+|+..... +++.+|.+|.++|+.++|.. .|.+|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 799999998887788 9999999999999998754 46788999999999999976 89999999999999999988
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
+++ |........|...|++++|. |.+- +-.|+++
T Consensus 89 ~g~---------------w~k~~e~~~h~~SVNsV~wa---------phey----------------------gl~Laca 122 (299)
T KOG1332|consen 89 NGR---------------WTKAYEHAAHSASVNSVAWA---------PHEY----------------------GLLLACA 122 (299)
T ss_pred CCc---------------hhhhhhhhhhcccceeeccc---------cccc----------------------ceEEEEe
Confidence 764 66677888999999999998 5543 2478888
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.||.|.+.+.+....
T Consensus 123 sSDG~vsvl~~~~~g~---------------------------------------------------------------- 138 (299)
T KOG1332|consen 123 SSDGKVSVLTYDSSGG---------------------------------------------------------------- 138 (299)
T ss_pred eCCCcEEEEEEcCCCC----------------------------------------------------------------
Confidence 8888888776654100
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC---C---------
Q 007489 269 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD---S--------- 336 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d---~--------- 336 (601)
|.. ......|...|++++|.|- |
T Consensus 139 --------------------------------------------w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 139 --------------------------------------------WTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred --------------------------------------------ccc-hhhhhccccccceeeecCcCCCccccccCccc
Confidence 000 0112334445555555553 3
Q ss_pred --CeEEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCC----CEEEEEecCCeEEEEEcCC
Q 007489 337 --SQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDG----QWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 337 --~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~----~~las~~~dg~i~iwd~~~ 408 (601)
++|++|+.|..|+||+..+++ .-++|.+ |.+.|..++|.|.- .+||+++.||+|.||..+.
T Consensus 174 ~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-----------H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-----------HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccceeeccCCccceeeeecCCcchhhhhhhhh-----------cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 579999999999999987763 3445666 99999999999964 4899999999999998763
Q ss_pred ceEEE---EeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 409 QRQHW---FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 409 ~~~~~---~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
....+ .+..+. ..+..+.||. .+++|++++.|+.|.+|.-..
T Consensus 243 e~e~wk~tll~~f~-~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFP-DVVWRVSWSL-SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccCcccccccccCC-cceEEEEEec-cccEEEEecCCcEEEEEEeCC
Confidence 32211 223332 5799999999 999999999999999997653
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=194.40 Aligned_cols=273 Identities=15% Similarity=0.159 Sum_probs=221.3
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeC------Cc-------
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS------RH------- 67 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~------~~------- 67 (601)
+.+++.|.+-+||.+++|.|+.++. ||.+.|++++|++.+ .+++++.|++..||.. ..
T Consensus 163 ~gtASADhTA~iWs~Esg~CL~~Y~--------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGACLATYT--------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred eeecccccceeEEeeccccceeeec--------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 6789999999999999999999999 999999999999999 8899999999999972 11
Q ss_pred -c--------------------------chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCC
Q 007489 68 -G--------------------------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 68 -~--------------------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
+ .++..+.+|.+.|.+..|-..|+.+++++.|.+..+||++++..
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~-------- 306 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV-------- 306 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce--------
Confidence 0 04456789999999999999999999999999999999999986
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
+..+.+|.+....++-+ |..+ ++++.+.|.+.++||.+
T Consensus 307 ---------v~~LtGHd~ELtHcstH---------ptQr------------------------LVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 307 ---------VNILTGHDSELTHCSTH---------PTQR------------------------LVVTSSRDTTFRLWDFR 344 (481)
T ss_pred ---------eccccCcchhccccccC---------Ccce------------------------EEEEeccCceeEeccch
Confidence 88999999999988876 6665 99999999999999988
Q ss_pred ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 007489 201 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 280 (601)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 280 (601)
.. + .-.....+|...|++
T Consensus 345 ea-------------------I-------------------------------------------~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 345 EA-------------------I-------------------------------------------QSVAVFQGHTDTVTS 362 (481)
T ss_pred hh-------------------c-------------------------------------------ceeeeecccccceeE
Confidence 41 1 112333456788999
Q ss_pred EEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceee
Q 007489 281 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH 360 (601)
Q Consensus 281 ~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~ 360 (601)
+.|..+.+.+..++|.+|++||++.. ...+ .. .....+++.++.+..+..++.-..+..|++||+. |..+.
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLrNM--Rspl---AT---IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~Rla 433 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLRNM--RSPL---AT---IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLA 433 (481)
T ss_pred EEEecCCceeecCCCceEEEeeeccc--cCcc---ee---eecCCccceeEeecCCceEEeccCCceEEEEecC-CCccc
Confidence 99999888777789999999999862 2221 11 1224578999999988899999999999999987 54444
Q ss_pred eeccCcccccccCCCCCCCeeEEEEccCC--CEEEEEecCCeEEEEEcCCc
Q 007489 361 TFTPCREEHDREIQPSEPPITKMFTSSDG--QWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~l~~spd~--~~las~~~dg~i~iwd~~~~ 409 (601)
.+... .-.+|...|+|++|..+- .-|++++.|..+.=|++...
T Consensus 434 RlPrt------sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLPRT------SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCcc------cccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 44311 112388999999997653 34778999999999987653
No 115
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.4e-26 Score=187.24 Aligned_cols=264 Identities=16% Similarity=0.146 Sum_probs=199.6
Q ss_pred EEEEEeeC--CeEEEEc-------CCCcEEEeeCCccchhhhcc--ccccceEEEEEeCC-CCEEEEEeeCCeEEEEEec
Q 007489 41 WSLLSLRC--GTLVSAD-------STGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPS-HNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 41 ~~v~~s~~--g~l~s~~-------~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~ 108 (601)
+++.|||- ++|+.+. ..|++.|-++..++-+..+. .-...+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889984 3554332 46899999997554444333 24678999999995 4678899999999999954
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
.... ++..++.|...|.++.+. +..+ ..++++
T Consensus 92 ~~s~----------------Pi~~~kEH~~EV~Svdwn---------~~~r-----------------------~~~lts 123 (311)
T KOG0277|consen 92 MPSK----------------PIHKFKEHKREVYSVDWN---------TVRR-----------------------RIFLTS 123 (311)
T ss_pred CCCc----------------chhHHHhhhhheEEeccc---------cccc-----------------------eeEEee
Confidence 4332 377889999999999986 3222 377777
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.|++|++|+.....
T Consensus 124 SWD~TiKLW~~~r~~----------------------------------------------------------------- 138 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPN----------------------------------------------------------------- 138 (311)
T ss_pred ccCCceEeecCCCCc-----------------------------------------------------------------
Confidence 899999888865311
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCc
Q 007489 269 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRR 347 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~ 347 (601)
.+ .++.+|..-|...+|+| ..+.+++++.|++
T Consensus 139 ------------------------------------------Sv-----~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 139 ------------------------------------------SV-----QTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred ------------------------------------------ce-----EeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 00 22345666777888888 5678999999999
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
+++||++.......+.. |...|.++.|+. +.+.|++|+.|+.|++||+...+.....-..|+-.|..+
T Consensus 172 l~lwdvr~~gk~~~i~a-----------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv 240 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEA-----------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV 240 (311)
T ss_pred EEEEEecCCCceeEEEe-----------ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE
Confidence 99999865433334666 889999999998 566889999999999999988765322224577889999
Q ss_pred EecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 427 GFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.|||....+|++++.|-+++|||.+.+.- +.+++.-|..-|.++.|++-
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds----------~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDS----------AIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchh----------hhhhhhccceEEeccccccc
Confidence 99996678899999999999999986542 45567788999999999987
No 116
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-25 Score=208.54 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=128.3
Q ss_pred CCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEE
Q 007489 276 RKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd 352 (601)
..|+.+.|.| |...||+ ++|+.|++|.+..++.....- -....+..|...|+++.|+| -...|++++.|-+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC-CcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 4577777877 4566777 799999999998743222221 11245678889999999999 456799999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE-EEeeccCCCceeEEEecCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p~ 431 (601)
+.+++....|.+ |.+.|..++|||||+.+|+.+.||+|+||+-...+.. ..-+..-+..-..+.|.-
T Consensus 707 l~~~~~~~~l~g-----------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac- 774 (1012)
T KOG1445|consen 707 LANAKLYSRLVG-----------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC- 774 (1012)
T ss_pred hhhhhhhheecc-----------CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-
Confidence 999998888888 9999999999999999999999999999998876543 111222223344577888
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCC
Q 007489 432 NNNVLIITTSS----NQVYVFDVEAKQ 454 (601)
Q Consensus 432 ~~~~l~~~~~d----g~v~vwd~~~~~ 454 (601)
+++++++.+.| .+|.+||.++-.
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhcc
Confidence 99999888766 579999987644
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.4e-24 Score=205.19 Aligned_cols=288 Identities=14% Similarity=0.147 Sum_probs=205.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
++++++.|+.|++||+.+++.+..+. .+.. +.+++|+|+| .+ ++++.++.|++||..+++.+..+..+.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~--------~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFP--------VGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEE--------CCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 36899999999999999999988887 4433 6789999999 55 677889999999999988877676544
Q ss_pred cceEEEEEeCCCCEEEEE-eeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 79 GDVNALAAAPSHNRVFST-GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
. +..++|+|+++.++++ +.|+.|++||+.+... ...+. +...+.+++++ |+
T Consensus 74 ~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-----------------~~~~~-~~~~~~~~~~~---------~d 125 (300)
T TIGR03866 74 D-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-----------------LAEIP-VGVEPEGMAVS---------PD 125 (300)
T ss_pred C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-----------------EeEee-CCCCcceEEEC---------CC
Confidence 3 5688999999987654 5689999999987542 22222 22346778887 88
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCC-eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++ .++++..++ .+..||..+..
T Consensus 126 g~------------------------~l~~~~~~~~~~~~~d~~~~~--------------------------------- 148 (300)
T TIGR03866 126 GK------------------------IVVNTSETTNMAHFIDTKTYE--------------------------------- 148 (300)
T ss_pred CC------------------------EEEEEecCCCeEEEEeCCCCe---------------------------------
Confidence 86 777777665 45666765311
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~ 314 (601)
....+. ....+.+++|+|+++++++ + .++.+++|++.. +..+-.
T Consensus 149 -----------------------------~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~ 194 (300)
T TIGR03866 149 -----------------------------IVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT---RKVIKK 194 (300)
T ss_pred -----------------------------EEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc---ceeeee
Confidence 000111 1133567889999998865 3 588999999986 222111
Q ss_pred Eeee--cCCcCccceeEEEEccCCCeEEEE-ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 315 INKR--QLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 315 ~~~~--~~~~~~~~v~~i~~s~d~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
+... ...........++|+|++++++++ ..++.|.+||+.+++.+..+. +...+.+++|+|+|++
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL------------VGQRVWQLAFTPDEKY 262 (300)
T ss_pred eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE------------eCCCcceEEECCCCCE
Confidence 1100 000011123568899999986554 456789999999888776554 3456889999999999
Q ss_pred EEEE-ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 392 LAAV-NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 392 las~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
|+++ ..+|.|.+||+.+++....++. +..++.++|+|
T Consensus 263 l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 9886 4689999999999998878764 35678888875
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=184.95 Aligned_cols=314 Identities=16% Similarity=0.178 Sum_probs=213.0
Q ss_pred EEEeeCCccc-----hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc
Q 007489 60 VQFWDSRHGT-----LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 134 (601)
Q Consensus 60 i~vwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (601)
.+-|+.+..+ .+..+++|...|++++|+.||++|+|++.|+.|++|+++.-.... .+. ++. .
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e----------Hr~--~R~-n 129 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE----------HRC--IRQ-N 129 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh----------hhH--hhc-c
Confidence 4556655433 245688999999999999999999999999999999998743200 000 000 0
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP 214 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~ 214 (601)
..-+..+.++|+ ||.+ .++++.-...++++|.+...+.-.. . .+
T Consensus 130 ve~dhpT~V~Fa---------pDc~-----------------------s~vv~~~~g~~l~vyk~~K~~dG~~-~---~~ 173 (420)
T KOG2096|consen 130 VEYDHPTRVVFA---------PDCK-----------------------SVVVSVKRGNKLCVYKLVKKTDGSG-S---HH 173 (420)
T ss_pred ccCCCceEEEEC---------CCcc-----------------------eEEEEEccCCEEEEEEeeecccCCC-C---cc
Confidence 112244667777 7776 3666666666888887754221000 0 00
Q ss_pred CccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E
Q 007489 215 QRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S 293 (601)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~ 293 (601)
. + -| .-..+...|+..+..+-+..++.+|++ +
T Consensus 174 ---------~----------------v-~~---------------------D~~~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 174 ---------F----------------V-HI---------------------DNLEFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred ---------c----------------c-cc---------------------cccccchhcccceEEEeecCCceEEEEec
Confidence 0 0 00 011233345566777777788899999 7
Q ss_pred cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC---CCc-----eeeeeccC
Q 007489 294 DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS---SSE-----LLHTFTPC 365 (601)
Q Consensus 294 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~---~~~-----~~~~~~~~ 365 (601)
.|.+|.||++. ++.+-.+....+ .-+..+.||+|+++++++-.-.|++|..- .|+ .+..+.+
T Consensus 207 ~dt~i~lw~lk----Gq~L~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG- 276 (420)
T KOG2096|consen 207 LDTKICLWDLK----GQLLQSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG- 276 (420)
T ss_pred CCCcEEEEecC----Cceeeeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-
Confidence 89999999997 444422332222 33567899999999999998899999972 232 2334455
Q ss_pred cccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc----eEEEEeecc------CCCceeEEEecCCCCCE
Q 007489 366 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ----RQHWFISRL------EGASVTAAGFPPQNNNV 435 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~----~~~~~~~~~------~~~~v~~l~~~p~~~~~ 435 (601)
|...|..++||++...+++.+.||.++|||++-. +-...+... .++....++.+| +++.
T Consensus 277 ----------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~ 345 (420)
T KOG2096|consen 277 ----------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDS 345 (420)
T ss_pred ----------chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcE
Confidence 9999999999999999999999999999998521 111111111 234556899999 9988
Q ss_pred EEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEe
Q 007489 436 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 503 (601)
Q Consensus 436 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~ 503 (601)
|+++. ...+++|..++++. ++.--..|.+-|.+|+|+++ +..+...++....++.
T Consensus 346 lA~s~-gs~l~~~~se~g~~----------~~~~e~~h~~~Is~is~~~~--g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 346 LAVSF-GSDLKVFASEDGKD----------YPELEDIHSTTISSISYSSD--GKYIATCGDRYVRVIR 400 (420)
T ss_pred EEeec-CCceEEEEcccCcc----------chhHHHhhcCceeeEEecCC--CcEEeeecceeeeeec
Confidence 77665 45699999998864 22233458899999999998 6667666777666655
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=188.27 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=192.9
Q ss_pred hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 71 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
+..+..|.+.|++++.+ +.++++||.|-+|+|||+..... .+.+..|.+.|+++.|.++.+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------lg~ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------LGILLSHAGSITALKFYPPLS 96 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------hcceeccccceEEEEecCCcc
Confidence 56677899999999996 99999999999999999998775 788899999999999985443
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
...|++|+.||.|.+|+.....
T Consensus 97 -------------------------------~shLlS~sdDG~i~iw~~~~W~--------------------------- 118 (362)
T KOG0294|consen 97 -------------------------------KSHLLSGSDDGHIIIWRVGSWE--------------------------- 118 (362)
T ss_pred -------------------------------hhheeeecCCCcEEEEEcCCeE---------------------------
Confidence 1389999999999999987521
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
++ .....|...|+.++++|.|++.++ +.|+.+++|++-. +
T Consensus 119 -----------------------------------~~-~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~---G 159 (362)
T KOG0294|consen 119 -----------------------------------LL-KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR---G 159 (362)
T ss_pred -----------------------------------Ee-eeecccccccceeEecCCCceEEEEcCCceeeeehhhc---C
Confidence 22 223345567999999999998777 9999999999987 3
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
..-+. ..+. ...+.+.|+|.|.+++++..++ |-+|.+.+..+...+.. ...+.++.| -++
T Consensus 160 r~a~v---~~L~---~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~------------~~r~l~~~~-l~~ 219 (362)
T KOG0294|consen 160 RVAFV---LNLK---NKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN------------PKRILCATF-LDG 219 (362)
T ss_pred cccee---eccC---CcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc------------cccceeeee-cCC
Confidence 22111 1111 1235599999999999888765 99999988777666653 344666666 356
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe--cCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF--PPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
.+|++|..|+.|.+||.+...+...+. .|...|-++.+ .| ++.+|+++++||.|+|||++..
T Consensus 220 ~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 789999999999999999877765555 46678888874 34 6789999999999999999875
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=197.06 Aligned_cols=293 Identities=18% Similarity=0.206 Sum_probs=220.1
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEc-CCCcEEEeeCCccchhhhccccccceEEEEEe
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSAD-STGSVQFWDSRHGTLLQAHSFHKGDVNALAAA 87 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~-~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s 87 (601)
.++.+||+.+|....+++.. -...-.++......+++++. ....|.+|.+..........--.++|.|++-+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~-------~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGS-------YLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cceeEEecCCCceeEEecCc-------ccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 45999999999999999821 01112222222223555554 45689999997655554333456889999999
Q ss_pred CCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCC
Q 007489 88 PSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 167 (601)
Q Consensus 88 ~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~ 167 (601)
|+|.+|+.|+..|.|++|.+.+|.+ +..+.+|=..|+++.|+ -||.
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~L-----------------L~v~~aHYQ~ITcL~fs---------~dgs-------- 136 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGIL-----------------LNVLSAHYQSITCLKFS---------DDGS-------- 136 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccH-----------------HHHHHhhccceeEEEEe---------CCCc--------
Confidence 9999999999999999999999997 78889999999999998 7776
Q ss_pred ccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecc
Q 007489 168 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 247 (601)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~ 247 (601)
+|++||.||.|.+|.+...-
T Consensus 137 ----------------~iiTgskDg~V~vW~l~~lv-------------------------------------------- 156 (476)
T KOG0646|consen 137 ----------------HIITGSKDGAVLVWLLTDLV-------------------------------------------- 156 (476)
T ss_pred ----------------EEEecCCCccEEEEEEEeec--------------------------------------------
Confidence 99999999999999876410
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccce
Q 007489 248 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFA 327 (601)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 327 (601)
+++. ++. ...+ ..+..|.-+|
T Consensus 157 ------------------------------------~a~~-------~~~-----------~~p~-----~~f~~HtlsI 177 (476)
T KOG0646|consen 157 ------------------------------------SADN-------DHS-----------VKPL-----HIFSDHTLSI 177 (476)
T ss_pred ------------------------------------cccc-------CCC-----------ccce-----eeeccCccee
Confidence 0000 000 0011 2344555566
Q ss_pred eEEEEccC--CCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 328 HSMIFSYD--SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 328 ~~i~~s~d--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
+.+...+. ..+|++++.|.++++||+..+.++.++. ....+.+++.+|-++.++.|+.+|.|.+.+
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------------fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------------FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------------cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 66666553 4589999999999999999999988887 567899999999999999999999999998
Q ss_pred cCCce----------------EEEEeeccCC-CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCc
Q 007489 406 LEIQR----------------QHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR 468 (601)
Q Consensus 406 ~~~~~----------------~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 468 (601)
+.... ....+..+.+ ..|++++.+- |+.+|++|+.||.|+|||+.+.++ .+
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~-----------iR 313 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQC-----------IR 313 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHH-----------HH
Confidence 75433 1112222222 4899999999 999999999999999999999874 44
Q ss_pred ccccCCCcEEEEEeCCC
Q 007489 469 RYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 469 ~~~~~~~~v~~i~~~p~ 485 (601)
++....++|+.+.+.|-
T Consensus 314 tl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 314 TLQTSKGPVTNLQINPL 330 (476)
T ss_pred HHhhhccccceeEeecc
Confidence 55546688999988664
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=198.86 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=219.8
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC--ccchhhhccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCc
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~ 111 (601)
-.+.|++|.|+|.. .|++++.||+++|+.+. ....++.+.--..+|.+.+|.|+|. .++++|.-..+..||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 35789999999999 89999999999999775 4456677776788999999999998 89999999999999999876
Q ss_pred CCCCCCCCCccccceeEEecCccccc-cceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
... +....++. ..+....++ ++++ +|+..|.
T Consensus 292 ~~k---------------~~~~~g~e~~~~e~FeVS---------hd~~------------------------fia~~G~ 323 (514)
T KOG2055|consen 292 VTK---------------LKPPYGVEEKSMERFEVS---------HDSN------------------------FIAIAGN 323 (514)
T ss_pred ccc---------------ccCCCCcccchhheeEec---------CCCC------------------------eEEEccc
Confidence 421 22333333 345666776 7776 9999999
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
.|.|.+....+.. .+..+
T Consensus 324 ~G~I~lLhakT~e--------------------------------------------------------------li~s~ 341 (514)
T KOG2055|consen 324 NGHIHLLHAKTKE--------------------------------------------------------------LITSF 341 (514)
T ss_pred CceEEeehhhhhh--------------------------------------------------------------hhhee
Confidence 9999887766532 12222
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
+. .+.+..++|+.+++.|.+ +.+|.|.+|+++. ..++. +..-.+ .-.-++++.|+++++||+|+..|.|.
T Consensus 342 Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~---~~~~~---rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 342 KI--EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ---NSCLH---RFVDDG-SVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred ee--ccEEeeEEEecCCcEEEEEcCCceEEEEecCC---cceEE---EEeecC-ccceeeeeecCCCceEEeccCcceEE
Confidence 22 377899999999987766 7999999999986 22221 111111 11237888899999999999999999
Q ss_pred EEEcCC------CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe--cCCeEEEEEcCCceEEEEeeccCC-
Q 007489 350 VVDVSS------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN--CFGDVYIFNLEIQRQHWFISRLEG- 420 (601)
Q Consensus 350 vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~- 420 (601)
|||.++ .+++.++.. ....|+++.|+||++.||.+| ....+++-.+.+......+|...+
T Consensus 413 IYd~~s~~~s~~PkPik~~dN-----------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~ 481 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDN-----------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK 481 (514)
T ss_pred EeccchhhccCCCCchhhhhh-----------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence 999643 245555554 677899999999999998777 466799999888776555554432
Q ss_pred -CceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 421 -ASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 421 -~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+.|++|+|+| .+.+||+|..+|.|.+|.+.
T Consensus 482 vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 482 VGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 6799999999 99999999999999999874
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=5.5e-26 Score=205.58 Aligned_cols=263 Identities=17% Similarity=0.268 Sum_probs=214.3
Q ss_pred EEeeecCCcEEEEECCCC---ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchh--hhcc
Q 007489 2 LYSGSSDGYIRSWDAKLG---YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL--QAHS 75 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~--~~~~ 75 (601)
+.||+ .|.|+|||+..- ..+..+..- ....-|.++..+||| .|++|+.-.++.|||+..-++. ..+.
T Consensus 434 VyTgG-kgcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt 506 (705)
T KOG0639|consen 434 VYTGG-KGCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT 506 (705)
T ss_pred eEecC-CCeEEEeeccCCCCCCcccccccc------CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC
Confidence 56666 479999998532 233333211 346779999999999 9999999999999999765433 3444
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
.-.-...+++.+||.+..+++..||.|.|||+.+... ++.+.+|++.+.|+.++
T Consensus 507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~-----------------VrqfqGhtDGascIdis--------- 560 (705)
T KOG0639|consen 507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL-----------------VRQFQGHTDGASCIDIS--------- 560 (705)
T ss_pred CcchhhhhhhcCCccceeeeeccCCcEEEEEccccee-----------------eecccCCCCCceeEEec---------
Confidence 4445678899999999999999999999999999876 88999999999999998
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
+||. .|.+||.|.+|+.||+++..++..|..
T Consensus 561 ~dGt------------------------klWTGGlDntvRcWDlregrqlqqhdF------------------------- 591 (705)
T KOG0639|consen 561 KDGT------------------------KLWTGGLDNTVRCWDLREGRQLQQHDF------------------------- 591 (705)
T ss_pred CCCc------------------------eeecCCCccceeehhhhhhhhhhhhhh-------------------------
Confidence 8887 999999999999999998666555541
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~ 314 (601)
...|.++..+|++.+|++| .++.+.+.....
T Consensus 592 ---------------------------------------~SQIfSLg~cP~~dWlavGMens~vevlh~sk--------- 623 (705)
T KOG0639|consen 592 ---------------------------------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--------- 623 (705)
T ss_pred ---------------------------------------hhhheecccCCCccceeeecccCcEEEEecCC---------
Confidence 2568888899999999997 566666665543
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
..+..+..|..-|.++.|++.|+++++.+.|+-+..|...-|..+...+ ....|.++.+|-|.+||++
T Consensus 624 p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------E~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 624 PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------ccCcceeeeeccCceEEEe
Confidence 1235567788899999999999999999999999999998787666555 4678999999999999999
Q ss_pred EecCCeEEEEEc
Q 007489 395 VNCFGDVYIFNL 406 (601)
Q Consensus 395 ~~~dg~i~iwd~ 406 (601)
|+.|....||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999988888864
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-24 Score=182.80 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=202.9
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc----chhhhccccccceEEEEEeC--CCCEEEEEeeCCeEEEEE
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG----TLLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~ 106 (601)
.+|.+.|.++.|.+.| ++|+++.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3899999999999999 9999999999999996433 45667889999999999976 689999999999999998
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
-.... ......+|+....+......|..+.|. |.-. +-.|+
T Consensus 90 E~~~~--------~~~~~~~Wv~~ttl~DsrssV~DV~Fa---------P~hl----------------------GLklA 130 (361)
T KOG2445|consen 90 EQEKS--------EEAHGRRWVRRTTLVDSRSSVTDVKFA---------PKHL----------------------GLKLA 130 (361)
T ss_pred ecccc--------cccccceeEEEEEeecCCcceeEEEec---------chhc----------------------ceEEE
Confidence 65322 223446899999999999999999998 4432 23899
Q ss_pred EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 187 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 187 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
+++.||.|++|+......+. -|.+...-. .
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs------------------------------------~W~Lq~Ei~--------------~ 160 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLS------------------------------------QWTLQHEIQ--------------N 160 (361)
T ss_pred EeccCcEEEEEecCCccccc------------------------------------cchhhhhhh--------------h
Confidence 99999999999987533222 122111000 0
Q ss_pred EEEEEecCCCCeEEEEEcCC---CCEEEEEcCC------ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-
Q 007489 267 LVQVKSKASRKIICSTISNS---GMLFAYSDHV------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS- 336 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~---g~~l~~~~~~------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~- 336 (601)
+......+.....|+.|+|. ..+||+|.+. .++||.... ++.+ | ....++++|..+|+.|+|.|+-
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~rK-w-~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGRK-W-LKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--Ccce-e-eeehhcCCCCCcceeeeeccccC
Confidence 00000112355678888864 3678887666 889998875 3433 3 2235678999999999999963
Q ss_pred ---CeEEEEecCCcEEEEEcCCCc-eee---eeccCcc-----cccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEE
Q 007489 337 ---SQLIIAGHDRRIYVVDVSSSE-LLH---TFTPCRE-----EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 337 ---~~l~~~~~dg~i~vwd~~~~~-~~~---~~~~~~~-----~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iw 404 (601)
..||+++.|| |+||.+.... .+. .+.+... ....++..|+..|..+.|.-.|..|++.+.||.|++|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 4699999999 9999986311 000 0000000 0011234599999999999999999999999999999
Q ss_pred EcC
Q 007489 405 NLE 407 (601)
Q Consensus 405 d~~ 407 (601)
...
T Consensus 316 kan 318 (361)
T KOG2445|consen 316 KAN 318 (361)
T ss_pred hhh
Confidence 753
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.4e-24 Score=182.12 Aligned_cols=294 Identities=15% Similarity=0.183 Sum_probs=219.8
Q ss_pred CEEeeecCCcEEEEECCCCc------eEEEEEec-cCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchh
Q 007489 1 MLYSGSSDGYIRSWDAKLGY------EIYRITVG-LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL 71 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~------~~~~~~~~-~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~ 71 (601)
++++|+.||.|.|||+++-. .+..-..- ......+|.-.|.++.|-|-. .+.+++.|.+++|||..+-+..
T Consensus 58 ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a 137 (397)
T KOG4283|consen 58 YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA 137 (397)
T ss_pred EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee
Confidence 47899999999999997532 11111110 112234899999999999854 8999999999999999998887
Q ss_pred hhccccccceEEEEEeCC---CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecc
Q 007489 72 QAHSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 148 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 148 (601)
..|+ -.+.|.+-++||- ..++++|..|-.|++-|+..+.+ ...+.+|...|.++.|+
T Consensus 138 ~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-----------------sH~LsGHr~~vlaV~Ws-- 197 (397)
T KOG4283|consen 138 VDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-----------------SHTLSGHRDGVLAVEWS-- 197 (397)
T ss_pred EEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-----------------eeeeccccCceEEEEec--
Confidence 7777 4678999999983 35777888899999999999986 78999999999999998
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
|... -.|++|+.||.|++||++..
T Consensus 198 -------p~~e-----------------------~vLatgsaDg~irlWDiRra-------------------------- 221 (397)
T KOG4283|consen 198 -------PSSE-----------------------WVLATGSADGAIRLWDIRRA-------------------------- 221 (397)
T ss_pred -------cCce-----------------------eEEEecCCCceEEEEEeecc--------------------------
Confidence 5554 38999999999999999862
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCC
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK 307 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~ 307 (601)
++...+.+....... .+.+....|.+.+..++|+.+|.++++ +.|..+++|+...+.
T Consensus 222 ---------sgcf~~lD~hn~k~~-------------p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 222 ---------SGCFRVLDQHNTKRP-------------PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ---------cceeEEeecccCccC-------------ccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 133333333322111 233456677899999999999999998 899999999998733
Q ss_pred CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 308 VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
+....+ -...-.........+. +-+...++.--.++.+.++++-++..++.+.. |-..|.+.++-|
T Consensus 280 ntl~~~--g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-----------h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 280 NTLREF--GPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-----------HLKRINCAAYRP 345 (397)
T ss_pred cccccc--ccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec-----------ccceeeEEeecC
Confidence 222110 0000000011111133 44555566566679999999999999999998 888999999999
Q ss_pred CCCEEEEEecCCeEEEEEc
Q 007489 388 DGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~ 406 (601)
+-+...+|+.|+.|..|-.
T Consensus 346 ~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred chhhhhccccCCccccccc
Confidence 9999999999999999976
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.7e-24 Score=207.35 Aligned_cols=281 Identities=16% Similarity=0.193 Sum_probs=219.1
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc-chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.|....+.|+|.|+| .|++++.||.|++|+..+- +...++..+...|.+++.. +++|++|+.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 688999999999999 9999999999999998765 4445555477888887764 66999999999999999998874
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
-..+...+-+++.++|+ .+|+ .++.||.|-
T Consensus 89 -----------------~~iL~Rftlp~r~~~v~---------g~g~------------------------~iaagsdD~ 118 (933)
T KOG1274|consen 89 -----------------DTILARFTLPIRDLAVS---------GSGK------------------------MIAAGSDDT 118 (933)
T ss_pred -----------------cceeeeeeccceEEEEe---------cCCc------------------------EEEeecCce
Confidence 33555567889999998 6766 999999999
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|++.+..... ......
T Consensus 119 ~vK~~~~~D~s---------------------------------------------------------------~~~~lr 135 (933)
T KOG1274|consen 119 AVKLLNLDDSS---------------------------------------------------------------QEKVLR 135 (933)
T ss_pred eEEEEeccccc---------------------------------------------------------------hheeec
Confidence 99998876521 112233
Q ss_pred cCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEee--ecCCcC-ccceeEEEEccCCCeEEEEecCCcE
Q 007489 273 KASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK--RQLPRK-LQFAHSMIFSYDSSQLIIAGHDRRI 348 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~i~~s~d~~~l~~~~~dg~i 348 (601)
+|..+|.++.++|++.+||+ +.+|.|++|++.. +.....+.. ...... ...+..++|+|+|..+++.+.|+.|
T Consensus 136 gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~---~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD---GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred ccCCceeeeeEcCCCCEEEEEecCceEEEEEccc---chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence 56789999999999999999 7999999999986 322211111 111111 3456788999998889999999999
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
.+|+...++....+.... +...+..+.|||+|+|||+++.||.|.|||.++... ......|++++|
T Consensus 213 kvy~r~~we~~f~Lr~~~---------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw 278 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRDKL---------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAW 278 (933)
T ss_pred EEEccCCceeheeecccc---------cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEec
Confidence 999999999888887653 455599999999999999999999999999998433 122368999999
Q ss_pred cCCCCCEEEEEeCCCeEEEE
Q 007489 429 PPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 429 ~p~~~~~l~~~~~dg~v~vw 448 (601)
.| +.+-|-....-|...+|
T Consensus 279 ~p-~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 279 KP-NANAITLITALGTLGVS 297 (933)
T ss_pred CC-CCCeeEEEeeccccccC
Confidence 99 77766555555544443
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-24 Score=179.40 Aligned_cols=246 Identities=19% Similarity=0.270 Sum_probs=179.8
Q ss_pred CEEeeecCCcEEEEECCCC---ceEEEEEeccCCCCCCCceEEEEEEEee--CC-eEEEEcCCCcEEEeeCCccc--hhh
Q 007489 1 MLYSGSSDGYIRSWDAKLG---YEIYRITVGLGGLGSGPELCIWSLLSLR--CG-TLVSADSTGSVQFWDSRHGT--LLQ 72 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~g-~l~s~~~dg~i~vwd~~~~~--~~~ 72 (601)
+|||+|+|++|+|+.++.. +++.+|. ||.++||.++|.. .| .|||++.||.|.||.-.+|+ ...
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~--------Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELT--------GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEec--------CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 5899999999999999754 3566666 9999999999985 66 89999999999999998775 345
Q ss_pred hccccccceEEEEEeCC--CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 73 AHSFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
....|.+.|++++|.|. |-.|++++.||.|.|.+.+... .|........|.-.|+++++.+..-
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g--------------~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG--------------GWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC--------------CccchhhhhccccccceeeecCcCC
Confidence 56789999999999984 5788999999999999988752 2555667789999999999983221
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
| |.. .++.. ......|++|
T Consensus 163 -----~-g~~---~~~~~----------~~~~krlvSg------------------------------------------ 181 (299)
T KOG1332|consen 163 -----P-GSL---VDQGP----------AAKVKRLVSG------------------------------------------ 181 (299)
T ss_pred -----C-ccc---cccCc----------ccccceeecc------------------------------------------
Confidence 1 110 00000 0000134444
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCc
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~ 310 (601)
|.|+.|+||+... +
T Consensus 182 --------------------------------------------------------------GcDn~VkiW~~~~---~- 195 (299)
T KOG1332|consen 182 --------------------------------------------------------------GCDNLVKIWKFDS---D- 195 (299)
T ss_pred --------------------------------------------------------------CCccceeeeecCC---c-
Confidence 4555555555543 1
Q ss_pred ceEEEeeecCCcCccceeEEEEccCC----CeEEEEecCCcEEEEEcCCC--cee-eeeccCcccccccCCCCCCCeeEE
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSYDS----SQLIIAGHDRRIYVVDVSSS--ELL-HTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~d~----~~l~~~~~dg~i~vwd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
.|.+. ..+.+|...|+.++|.|.- .+||+++.||+|.||..... +-. ..+.. ....+..+
T Consensus 196 -~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~-----------f~~~~w~v 262 (299)
T KOG1332|consen 196 -SWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE-----------FPDVVWRV 262 (299)
T ss_pred -chhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc-----------CCcceEEE
Confidence 23233 4478888899999999854 47999999999999986521 111 11121 56679999
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCC
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
.||+.|+.|+.++.|+.|.+|.-..
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCC
Confidence 9999999999999999999997543
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.6e-23 Score=198.07 Aligned_cols=291 Identities=14% Similarity=0.183 Sum_probs=200.5
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEE-EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeE
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 128 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 128 (601)
.+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++.+ ++++.++.|++||..+++.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------- 65 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------- 65 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE----------------
Confidence 57899999999999999999888887654 46789999999977 4677889999999988653
Q ss_pred EecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEE-EEecCCCeEEEEeccccCCcCC
Q 007489 129 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML-ISAGDDTKLFAYCANEFTKFSP 207 (601)
Q Consensus 129 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~~~~~~~~~~~~~ 207 (601)
...+..+ ..+..++++ |+++ .+ ++++.|+.|++||+.+..
T Consensus 66 -~~~~~~~-~~~~~~~~~---------~~g~------------------------~l~~~~~~~~~l~~~d~~~~~---- 106 (300)
T TIGR03866 66 -IGTLPSG-PDPELFALH---------PNGK------------------------ILYIANEDDNLVTVIDIETRK---- 106 (300)
T ss_pred -EEeccCC-CCccEEEEC---------CCCC------------------------EEEEEcCCCCeEEEEECCCCe----
Confidence 2223333 234567776 7775 55 455678899999987521
Q ss_pred CccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 007489 208 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 287 (601)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 287 (601)
.+..+. ....+.+++++|+|
T Consensus 107 ----------------------------------------------------------~~~~~~--~~~~~~~~~~~~dg 126 (300)
T TIGR03866 107 ----------------------------------------------------------VLAEIP--VGVEPEGMAVSPDG 126 (300)
T ss_pred ----------------------------------------------------------EEeEee--CCCCcceEEECCCC
Confidence 011111 11335678999999
Q ss_pred CEEEEEc-CC-ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCCCceeeeecc
Q 007489 288 MLFAYSD-HV-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 288 ~~l~~~~-~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 364 (601)
++++++. ++ .+..|+... ..... ... . ......++|+|++++|++++ .++.|++||+.+++.+..+..
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~---~~~~~---~~~-~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKT---YEIVD---NVL-V--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred CEEEEEecCCCeEEEEeCCC---CeEEE---EEE-c--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 9998853 33 456667653 22211 111 1 12346789999999886554 589999999998887766543
Q ss_pred CcccccccCCCCCCCeeEEEEccCCCEEEEE-ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEE-eCC
Q 007489 365 CREEHDREIQPSEPPITKMFTSSDGQWLAAV-NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSS 442 (601)
Q Consensus 365 ~~~~~~~~~~~~~~~i~~l~~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~-~~d 442 (601)
.... ..........++|+|++++++++ ..++.|.+||+.+++....+. ++..+.+++|+| ++++|+++ ..+
T Consensus 198 ~~~~----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~-~g~~l~~~~~~~ 270 (300)
T TIGR03866 198 EIPG----VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTP-DEKYLLTTNGVS 270 (300)
T ss_pred cccc----cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECC-CCCEEEEEcCCC
Confidence 1100 00011234568999999986543 456789999999888765543 235789999999 99999886 468
Q ss_pred CeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCC
Q 007489 443 NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 484 (601)
Q Consensus 443 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p 484 (601)
+.|.+||+++++. ...+. ....+.+++|+|
T Consensus 271 ~~i~v~d~~~~~~-----------~~~~~-~~~~~~~~~~~~ 300 (300)
T TIGR03866 271 NDVSVIDVAALKV-----------IKSIK-VGRLPWGVVVRP 300 (300)
T ss_pred CeEEEEECCCCcE-----------EEEEE-cccccceeEeCC
Confidence 9999999999874 22333 235568888775
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=195.27 Aligned_cols=260 Identities=16% Similarity=0.170 Sum_probs=199.0
Q ss_pred cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEE
Q 007489 7 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 85 (601)
Q Consensus 7 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~ 85 (601)
.-..|.+|.+.........- --.+.|.|++-+|+| +|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~--------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYI--------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred cCccccccccCchhhhhhhc--------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 34568888886554444221 357889999999999 667777999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCC
Q 007489 86 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 165 (601)
Q Consensus 86 ~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~ 165 (601)
|+-||.+|+|||.||.|.+|.+..-.. ......-.+...+..|+-.|..+.+. +.|.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~--------a~~~~~~~p~~~f~~HtlsITDl~ig---------~Gg~------ 187 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVS--------ADNDHSVKPLHIFSDHTLSITDLQIG---------SGGT------ 187 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecc--------cccCCCccceeeeccCcceeEEEEec---------CCCc------
Confidence 999999999999999999998865321 01111223467788999999999885 3221
Q ss_pred CCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEee
Q 007489 166 REKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILS 245 (601)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~ 245 (601)
...|++++.|.++++||+....
T Consensus 188 ----------------~~rl~TaS~D~t~k~wdlS~g~------------------------------------------ 209 (476)
T KOG0646|consen 188 ----------------NARLYTASEDRTIKLWDLSLGV------------------------------------------ 209 (476)
T ss_pred ----------------cceEEEecCCceEEEEEeccce------------------------------------------
Confidence 1389999999999999987521
Q ss_pred ccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc--------eEEEe
Q 007489 246 VRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG--------EWIIN 316 (601)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~--------~~~~~ 316 (601)
++..+.. +..+.+++++|-++.+.+ +.+|.|.+.++........ .-...
T Consensus 210 --------------------LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~ 267 (476)
T KOG0646|consen 210 --------------------LLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ 267 (476)
T ss_pred --------------------eeEEEec--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence 2223332 267899999998888877 5889988887764221110 11111
Q ss_pred eecCCcCcc--ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC
Q 007489 317 KRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 388 (601)
Q Consensus 317 ~~~~~~~~~--~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 388 (601)
...+.+|.. .|+|++++-||..|++|+.||.|+|||+.+.++++++.. ..++|+.+.+.|-
T Consensus 268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-----------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-----------SKGPVTNLQINPL 330 (476)
T ss_pred eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-----------hccccceeEeecc
Confidence 234567766 999999999999999999999999999999999999885 5788999998664
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.4e-25 Score=185.99 Aligned_cols=264 Identities=14% Similarity=0.121 Sum_probs=189.1
Q ss_pred CEEeeecCCcEEEEECCC-CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 1 MLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
+|++||.||+||+|+++. |..+-+-. ..|.++|.+++|+.|| ++++|+.|+.+++||+.++ .+..+..|.
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd 113 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHD 113 (347)
T ss_pred eEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Ceeeeeecc
Confidence 467999999999999986 45443222 2799999999999999 9999999999999999998 456677899
Q ss_pred cceEEEEEeCCCC--EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 79 GDVNALAAAPSHN--RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 79 ~~V~~l~~s~~~~--~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
++|.++.|-+... .|+||+.|.+|+.||.+.... +..+. -...+.++.+-
T Consensus 114 ~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-----------------v~t~~-LPeRvYa~Dv~---------- 165 (347)
T KOG0647|consen 114 APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-----------------VATLQ-LPERVYAADVL---------- 165 (347)
T ss_pred cceeEEEEecCCCcceeEecccccceeecccCCCCe-----------------eeeee-ccceeeehhcc----------
Confidence 9999999988665 899999999999999997653 22222 23455555432
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC--CeEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH--TSLLL 234 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 234 (601)
.++++.+..+..|.+|++++......... .+..-.+++++.-+ ++..|
T Consensus 166 -------------------------~pm~vVata~r~i~vynL~n~~te~k~~~-----SpLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 166 -------------------------YPMAVVATAERHIAVYNLENPPTEFKRIE-----SPLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred -------------------------CceeEEEecCCcEEEEEcCCCcchhhhhc-----CcccceeeEEEEEecCCceEe
Confidence 13889999999999999976443322221 11223444555444 55677
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~ 313 (601)
.+..|.+.|..++...... ..++..+..... ....-..|++++|+|.-..|++ |+||+...||-+. ..++
T Consensus 216 GsiEGrv~iq~id~~~~~~-nFtFkCHR~~~~----~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---r~kL- 286 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKD-NFTFKCHRSTNS----VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---RTKL- 286 (347)
T ss_pred eeecceEEEEecCCCCccC-ceeEEEeccCCC----CCCceEEecceEeecccceEEEecCCceEEEecchh---hhhh-
Confidence 7777999999998754321 111111100000 0001245788999998888888 9999999999875 3343
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEe
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~ 343 (601)
...+.+..+|++..|+.+|+++|.+.
T Consensus 287 ----k~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 287 ----KTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ----hccCcCCCccceeEecCCCCEEEEEe
Confidence 44566778999999999999988764
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.9e-24 Score=181.49 Aligned_cols=287 Identities=16% Similarity=0.161 Sum_probs=201.8
Q ss_pred EEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCC
Q 007489 40 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL 118 (601)
Q Consensus 40 V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 118 (601)
-.|+.|++.| +||+|+.||.|.|||+.|...-..+.+|..+|.+++||+||+.|+|++.|..|.+||+..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~------ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP------ 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc------
Confidence 7899999999 999999999999999999999899999999999999999999999999999999999999875
Q ss_pred CCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEe
Q 007489 119 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 198 (601)
Q Consensus 119 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~ 198 (601)
+..++ ...+|....|+ |-.. +.++..-.+..-.+.+
T Consensus 100 -----------l~rir-f~spv~~~q~h---------p~k~-----------------------n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 100 -----------LKRIR-FDSPVWGAQWH---------PRKR-----------------------NKCVATIMEESPVVID 135 (405)
T ss_pred -----------eeEEE-ccCccceeeec---------cccC-----------------------CeEEEEEecCCcEEEE
Confidence 33333 35677777776 4332 2333332222122222
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
.... .+. .+..++++.+ ....
T Consensus 136 ~s~~----~h~--------------~Lp~d~d~dl-----------------------------------------n~sa 156 (405)
T KOG1273|consen 136 FSDP----KHS--------------VLPKDDDGDL-----------------------------------------NSSA 156 (405)
T ss_pred ecCC----cee--------------eccCCCcccc-----------------------------------------cccc
Confidence 1110 000 0000000000 0112
Q ss_pred EEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-
Q 007489 279 ICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS- 356 (601)
Q Consensus 279 ~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~- 356 (601)
.+..|.+.|+++++| ..|.+.+|+..+ ..++ ...... ....|..+.++..|+.|++-+.|..|+.|++..-
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t---~e~v---as~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAET---LECV---ASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecch---heee---eeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 233578889999995 778999999876 2221 111111 1357889999999999999999999999997521
Q ss_pred ------c--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CCeEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 357 ------E--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 357 ------~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+ +.+.+.... ....=.+++||.+|.|+++++. ...++||....|..++.+....|.....+.
T Consensus 230 ~~~r~~e~e~~~K~qDvV---------Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~ 300 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVV---------NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVN 300 (405)
T ss_pred ccCccCCcChhHHHHHHH---------hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecc
Confidence 1 112221110 2233467899999999988764 467999999999999888877767788999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
|+| -...+++. ..|.|+||....-
T Consensus 301 whp-~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHP-VRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ccc-ceeeeeec-cCCceEEEEeecc
Confidence 999 76666666 7899999998663
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=202.01 Aligned_cols=270 Identities=16% Similarity=0.233 Sum_probs=211.6
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
.|...-+.|+|.|+|.+|++++.||.|++|+....... ...+..+...|.+++..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~----------------P~ti~~~g~~v~~ia~~--------- 65 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE----------------PETIDISGELVSSIACY--------- 65 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC----------------CchhhccCceeEEEeec---------
Confidence 58888999999999999999999999999987765210 12333367778887753
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
+ ..|++|+.+++|.+|....+.. ++
T Consensus 66 --s------------------------~~f~~~s~~~tv~~y~fps~~~-------------------------~~---- 90 (933)
T KOG1274|consen 66 --S------------------------NHFLTGSEQNTVLRYKFPSGEE-------------------------DT---- 90 (933)
T ss_pred --c------------------------cceEEeeccceEEEeeCCCCCc-------------------------cc----
Confidence 2 2899999999999998765221 00
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.+.++. -++++++++.+|+++|. ++|-.|++.++.. ..+.
T Consensus 91 ------------------------------iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~--- 131 (933)
T KOG1274|consen 91 ------------------------------ILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQE--- 131 (933)
T ss_pred ------------------------------eeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccc--cchh---
Confidence 222332 56899999999999999 6888899999875 2222
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
..+.+|..+|.++.|+|++.+||+.+.||.|++||+.++.+.+++.+....-+. .....++.++|+|+|..++.
T Consensus 132 ---~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~---~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 132 ---KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF---ILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred ---eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc---cccceeeeeeecCCCCeEEe
Confidence 567889999999999999999999999999999999999888877753221110 02456788999999888888
Q ss_pred EecCCeEEEEEcCCceEEEEeeccC-CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccC
Q 007489 395 VNCFGDVYIFNLEIQRQHWFISRLE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF 473 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 473 (601)
...|+.|.+|+..+......+..-+ ...+..++|+| .|.|||+++.||.|.|||+++-+. ...
T Consensus 206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~---------------~~~ 269 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER---------------HEF 269 (933)
T ss_pred eccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh---------------ccc
Confidence 8999999999999998876665433 34599999999 999999999999999999998431 112
Q ss_pred CCcEEEEEeCCCC
Q 007489 474 PGEVIGLSFSPSP 486 (601)
Q Consensus 474 ~~~v~~i~~~p~~ 486 (601)
...|++++|.|++
T Consensus 270 ~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 270 KRAVCCEAWKPNA 282 (933)
T ss_pred cceeEEEecCCCC
Confidence 4689999999983
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=6.1e-24 Score=190.77 Aligned_cols=266 Identities=16% Similarity=0.164 Sum_probs=195.4
Q ss_pred ccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 76 FHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
.|.+.|+.+.+.|+.. .+++.+..+.|.|||.......... .....+...+.+|...-.+++|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------~~~~~Pdl~L~gH~~eg~glsWn-------- 186 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------SGECRPDLRLKGHEKEGYGLSWN-------- 186 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------cccCCCceEEEeecccccccccc--------
Confidence 4889999999999664 5567788899999998765421110 00111233667787766777775
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
+.. ...|++++.|+.|++||+........
T Consensus 187 -~~~-----------------------~g~Lls~~~d~~i~lwdi~~~~~~~~--------------------------- 215 (422)
T KOG0264|consen 187 -RQQ-----------------------EGTLLSGSDDHTICLWDINAESKEDK--------------------------- 215 (422)
T ss_pred -ccc-----------------------ceeEeeccCCCcEEEEeccccccCCc---------------------------
Confidence 332 24899999999999999986332100
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCCcce
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
..........|...|..++|++-. .++++ +.|+.+.|||++.. ..+.
T Consensus 216 -----------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~ 264 (422)
T KOG0264|consen 216 -----------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKP 264 (422)
T ss_pred -----------------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCC
Confidence 002234455677889999999865 45555 89999999999962 2211
Q ss_pred EEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCC-
Q 007489 313 WIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDG- 389 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~- 389 (601)
.....+|...+++++|+| ++..||+|+.|++|.+||+++. ++++++.+ |...|.++.|||+.
T Consensus 265 ----~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-----------H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 265 ----SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-----------HEDEVFQVEWSPHNE 329 (422)
T ss_pred ----cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC-----------CCcceEEEEeCCCCC
Confidence 255678899999999999 5667899999999999999765 46788888 99999999999975
Q ss_pred CEEEEEecCCeEEEEEcCCceEE-------------EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQH-------------WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
..||+++.|+++.|||+..-... ..+...|...|..+.|+|...-.|++++.|+.+.||.+...
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 57899999999999998532111 12334466889999999944556778899999999998754
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.9e-24 Score=193.08 Aligned_cols=280 Identities=12% Similarity=0.164 Sum_probs=222.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc---chhhhccc--cccceEEEEEeCCCCEEEEEeeCCeEEEEEec
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---TLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~---~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~ 108 (601)
.|...|.++..|... .+.+|+. |.|+|||+... .++..+.. -.+.|.++...|||+.|++||.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 588999999999777 6777665 78999999632 23444443 45789999999999999999999999999998
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
...... ...+........+++++ ||.+ ..+++
T Consensus 496 apTpri---------------kaeltssapaCyALa~s---------pDak------------------------vcFsc 527 (705)
T KOG0639|consen 496 APTPRI---------------KAELTSSAPACYALAIS---------PDAK------------------------VCFSC 527 (705)
T ss_pred CCCcch---------------hhhcCCcchhhhhhhcC---------Cccc------------------------eeeee
Confidence 865311 12233333456677777 8887 99999
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
..||.|.+||+.+.. +.
T Consensus 528 csdGnI~vwDLhnq~---------------------------------------------------------------~V 544 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQT---------------------------------------------------------------LV 544 (705)
T ss_pred ccCCcEEEEEcccce---------------------------------------------------------------ee
Confidence 999999999998622 22
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc
Q 007489 269 QVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
+...+|...+.|+.+++||..|-+ |-|++||.||++. +.++ .-......|.++.++|++.+|++|-.++.
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre---grql------qqhdF~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE---GRQL------QQHDFSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhh---hhhh------hhhhhhhhheecccCCCccceeeecccCc
Confidence 333456788999999999999988 7999999999996 3332 11233468999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+.|.... +.....+.. |..-|.++.|++.|+|+++.+.|.-+-.|...-+..+.. ....+.|.++.
T Consensus 616 vevlh~s-kp~kyqlhl-----------heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq--skE~SsVlsCD 681 (705)
T KOG0639|consen 616 VEVLHTS-KPEKYQLHL-----------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCD 681 (705)
T ss_pred EEEEecC-Cccceeecc-----------cccEEEEEEecccCceeeecCchhhhhhccCccccceee--ccccCcceeee
Confidence 9998865 444455555 899999999999999999999999999999988876533 33457999999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEc
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
.+- |++++++|+.|..-.||.+
T Consensus 682 IS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 682 ISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecc-CceEEEecCCCcceEEEEE
Confidence 999 9999999999988888865
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-21 Score=158.21 Aligned_cols=294 Identities=12% Similarity=0.139 Sum_probs=211.1
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccc-cceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV-IKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
.+..|.+++|+|.|.+.+.|+...+++|-....-... .. ..+.. ...-+....-..|...|.+.+|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~-r~--~hea~~~pp~v~~kr~khhkgsiyc~~ws--------- 98 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL-RH--AHEAAKQPPSVLCKRNKHHKGSIYCTAWS--------- 98 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCc-cc--ccccccCCCeEEeeeccccCccEEEEEec---------
Confidence 4568999999999999999999998887643221100 00 00000 01111223445688999999999
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCC-cCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK-FSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|+|+ ++++|+.|.+|++...+.... ..++.
T Consensus 99 ~~ge------------------------liatgsndk~ik~l~fn~dt~~~~g~d------------------------- 129 (350)
T KOG0641|consen 99 PCGE------------------------LIATGSNDKTIKVLPFNADTCNATGHD------------------------- 129 (350)
T ss_pred CccC------------------------eEEecCCCceEEEEecccccccccCcc-------------------------
Confidence 9987 999999999999887654110 00100
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC----CCCEEEEEcCCccEEEEeecCCCCc
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN----SGMLFAYSDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~g~~l~~~~~~~v~l~~~~~~~~~~ 310 (601)
.++. -|++.|..++|-. .|..|+++..|..+||-.+. ..++
T Consensus 130 ---------------------------------le~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc-~~g~ 174 (350)
T KOG0641|consen 130 ---------------------------------LEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC-GRGQ 174 (350)
T ss_pred ---------------------------------eeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec-CCCC
Confidence 0111 2356788888854 35677777666777776655 2244
Q ss_pred ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
.+ ..+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++..... +.. -....|.+++..|.|+
T Consensus 175 ~~-----~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--~~g--lessavaav~vdpsgr 244 (350)
T KOG0641|consen 175 GF-----HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--DGG--LESSAVAAVAVDPSGR 244 (350)
T ss_pred cc-----eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc--CCC--cccceeEEEEECCCcc
Confidence 44 5678888888776 456788999999999999999988888877764321 000 0236799999999999
Q ss_pred EEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccc
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRY 470 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 470 (601)
+|++|-.|....+||+..++.+..+. .|...|.++.|+| ...+|++++.|..|++-|++..-..+. .....
T Consensus 245 ll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el-------~~~vv 315 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHEL-------PIMVV 315 (350)
T ss_pred eeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcC-------ceEEE
Confidence 99999999999999999999876665 4668999999999 999999999999999999987542221 12345
Q ss_pred ccCCCcEEEEEeCCC
Q 007489 471 QEFPGEVIGLSFSPS 485 (601)
Q Consensus 471 ~~~~~~v~~i~~~p~ 485 (601)
..|.+.+..+.|+|.
T Consensus 316 ~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQ 330 (350)
T ss_pred EeccCceEEEEecCc
Confidence 679999999999997
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=193.45 Aligned_cols=315 Identities=15% Similarity=0.154 Sum_probs=210.8
Q ss_pred EEEEee--CC--eEEEEcCCCcEEEeeCCccch------hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 42 SLLSLR--CG--TLVSADSTGSVQFWDSRHGTL------LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 42 ~v~~s~--~g--~l~s~~~dg~i~vwd~~~~~~------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
+..|++ +. .|+.+..||.|.++|...... +..+..|...|..+.|.|....|++++.|.++++||+.+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356664 22 689999999999999875432 24455799999999999977788999999999999999987
Q ss_pred CCCCCCCCCccccceeEEecC--ccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 112 IGPNDGLSSSEVIKKWIYVGS--VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
+ ... +.+|+..|.+++|. |++. ..|++|+
T Consensus 134 l-----------------~G~~~~~GH~~SvkS~cf~---------~~n~-----------------------~vF~tGg 164 (720)
T KOG0321|consen 134 L-----------------VGGRLNLGHTGSVKSECFM---------PTNP-----------------------AVFCTGG 164 (720)
T ss_pred e-----------------ecceeecccccccchhhhc---------cCCC-----------------------cceeecc
Confidence 5 333 78999999999998 6665 5999999
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
.||.+.+||++....-..... ...++....... . +... ..+.+..
T Consensus 165 RDg~illWD~R~n~~d~~e~~-----------------------------~~~~~~~~n~~p-t---pskp--~~kr~~k 209 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEF-----------------------------DNRIYGRHNTAP-T---PSKP--LKKRIRK 209 (720)
T ss_pred CCCcEEEEEEeccchhhHHHH-----------------------------hhhhhccccCCC-C---CCch--hhccccc
Confidence 999999999986331000000 000000000000 0 0000 0000000
Q ss_pred EEecCCCCeEE---EEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEE---eeecCCcC---ccceeEEEEccCCCe
Q 007489 270 VKSKASRKIIC---STISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWII---NKRQLPRK---LQFAHSMIFSYDSSQ 338 (601)
Q Consensus 270 ~~~~~~~~i~~---~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~---~~~~~~~~---~~~v~~i~~s~d~~~ 338 (601)
...+...|.+ +.+..|...||+ | .|+.|++||++... ..+.. ....++.+ .-.+.++.....|.+
T Consensus 210 -~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~---~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 210 -WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY---TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred -cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc---cccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 0011122222 344566777777 4 59999999998621 11111 11222333 235677777778899
Q ss_pred EEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 339 LIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 339 l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
|++.+.|+.|++|++.+.. ++..+.+.. ....-..-..|||+.+|++|+.|...++|.+.+.+....+.
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~---------~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKL---------NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcc---------cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 9888889999999986543 445555422 11122234568999999999999999999999887654555
Q ss_pred ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 417 RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 417 ~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
..|...|++++|.|..-.-+++++.|..++||++..+
T Consensus 357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 5577889999999954456888899999999999655
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6e-23 Score=190.14 Aligned_cols=298 Identities=17% Similarity=0.223 Sum_probs=205.2
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCc
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~ 111 (601)
+||++.|.|+...|.| .|++|+.||+|+||.+.+|+++.++. ..+.|.|++|+|.+. .++++..+..+.+-+..-|.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 3999999999999999 99999999999999999999999887 466999999999764 23344444446666554431
Q ss_pred C---CCCCCCCC--------ccccceeEEe---------cCccccccceeEEEeeccccCCCCCCcccccccCCCCcccc
Q 007489 112 I---GPNDGLSS--------SEVIKKWIYV---------GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 171 (601)
Q Consensus 112 ~---~~~~~~~~--------~~~~~~~~~~---------~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 171 (601)
. .....+.. ......|... ...-.|...|+.+.|+ ..|
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH---------rkG------------- 533 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH---------RKG------------- 533 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee---------cCC-------------
Confidence 1 00000000 0011223221 1122334444555544 333
Q ss_pred ccccccccCCCCEEEEecCCC---eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccc
Q 007489 172 FSYHKWAHLGVPMLISAGDDT---KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL 248 (601)
Q Consensus 172 ~~~~~~~~~~~~~l~s~~~d~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~ 248 (601)
.+|++...++ .|.+.++.......++
T Consensus 534 -----------DYlatV~~~~~~~~VliHQLSK~~sQ~PF---------------------------------------- 562 (733)
T KOG0650|consen 534 -----------DYLATVMPDSGNKSVLIHQLSKRKSQSPF---------------------------------------- 562 (733)
T ss_pred -----------ceEEEeccCCCcceEEEEecccccccCch----------------------------------------
Confidence 2555544433 4555554431111110
Q ss_pred cCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCcccee
Q 007489 249 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH 328 (601)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 328 (601)
....+.+.++.|+|...++.+++...|++||+.. ...+ ..+......|.
T Consensus 563 -----------------------~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k---qelv-----KkL~tg~kwiS 611 (733)
T KOG0650|consen 563 -----------------------RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK---QELV-----KKLLTGSKWIS 611 (733)
T ss_pred -----------------------hhcCCceeEEEecCCCceEEEEeccceEEEehhH---HHHH-----HHHhcCCeeee
Confidence 0113678999999999999999999999999985 2221 33444466899
Q ss_pred EEEEccCCCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 329 SMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 329 ~i~~s~d~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
.++++|.|..|++++.|+.+..||+.-. ++.+++.. |...++.++|++.-.++|+|+.||++.||.-.
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-----------H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-----------HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-----------hhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 9999999999999999999999999644 56677776 89999999999999999999999999998531
Q ss_pred ------CceEEEEeeccCC------CceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 408 ------IQRQHWFISRLEG------ASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 408 ------~~~~~~~~~~~~~------~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
..-.+..+..+.+ ..|..+.|+| ...+|++++.||+|++|
T Consensus 681 VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 1222222222221 3478889999 99999999999999998
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.6e-23 Score=183.72 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=210.5
Q ss_pred CEEeeecCCcEEEEECC--CCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchh--hhc
Q 007489 1 MLYSGSSDGYIRSWDAK--LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL--QAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~--~~~ 74 (601)
+|++|+.||+++||.+. +...++.+. -...+|.+.+|.|+| .+++++....+..||+.+++.. ...
T Consensus 227 lllvaG~d~~lrifqvDGk~N~~lqS~~--------l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVNPKLQSIH--------LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred eEEEecCCCcEEEEEecCccChhheeee--------eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 47899999999999985 334566665 356789999999999 6888999999999999987654 333
Q ss_pred cccc-cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 75 SFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 75 ~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
.++. ..+....+++++++|+..|..|.|.+....+++. +..+. -.+.|..++|+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-----------------i~s~K-ieG~v~~~~fs------- 353 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-----------------ITSFK-IEGVVSDFTFS------- 353 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----------------hheee-eccEEeeEEEe-------
Confidence 4443 4567788999999999999999999999888774 33332 36678899998
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
.|++ .|++.+.+|.|++||++...
T Consensus 354 --Sdsk------------------------~l~~~~~~GeV~v~nl~~~~------------------------------ 377 (514)
T KOG2055|consen 354 --SDSK------------------------ELLASGGTGEVYVWNLRQNS------------------------------ 377 (514)
T ss_pred --cCCc------------------------EEEEEcCCceEEEEecCCcc------------------------------
Confidence 7777 88888899999999998621
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCC---CC
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK---VG 309 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~---~~ 309 (601)
.+.++...+.-.-++++.|++|.+||+ +..|-|.||+....- ..
T Consensus 378 --------------------------------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 378 --------------------------------CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred --------------------------------eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 122233333345678888999999999 577889999976411 11
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEec--CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH--DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
..+ ..+......|++++|++|++.||.++. ...+++..+.+......|..... .-+.|+|++|||
T Consensus 426 kPi-----k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~--------~vg~vtc~aFSP 492 (514)
T KOG2055|consen 426 KPI-----KTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT--------KVGHVTCMAFSP 492 (514)
T ss_pred Cch-----hhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC--------cccceEEEEecC
Confidence 111 233344568999999999999999887 56799999988777777765321 456799999999
Q ss_pred CCCEEEEEecCCeEEEEEcC
Q 007489 388 DGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~ 407 (601)
.+.+||.|..+|+|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 99999999999999999864
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=6.5e-23 Score=184.23 Aligned_cols=264 Identities=15% Similarity=0.142 Sum_probs=194.8
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccc----------hhhhccccccceEEEEEeCC-CCEEEEEeeCCe
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT----------LLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQ 101 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~----------~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~ 101 (601)
.|.+.|+.+.+.|+. .+++.+..+.|.|||..+.. +-.++.+|...=.+|+|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 699999999999998 67778899999999986432 11267899998889999984 458899999999
Q ss_pred EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCC
Q 007489 102 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 181 (601)
Q Consensus 102 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (601)
|++||+...... ...-.....+.+|+..|..++|+ +-..
T Consensus 202 i~lwdi~~~~~~----------~~~~~p~~~~~~h~~~VeDV~~h---------~~h~---------------------- 240 (422)
T KOG0264|consen 202 ICLWDINAESKE----------DKVVDPKTIFSGHEDVVEDVAWH---------PLHE---------------------- 240 (422)
T ss_pred EEEEeccccccC----------CccccceEEeecCCcceehhhcc---------ccch----------------------
Confidence 999999876531 11122245678999999999998 4433
Q ss_pred CCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCC
Q 007489 182 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 261 (601)
Q Consensus 182 ~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~ 261 (601)
..|.+++.|+.+.+||.++. ...
T Consensus 241 -~lF~sv~dd~~L~iwD~R~~-~~~------------------------------------------------------- 263 (422)
T KOG0264|consen 241 -DLFGSVGDDGKLMIWDTRSN-TSK------------------------------------------------------- 263 (422)
T ss_pred -hhheeecCCCeEEEEEcCCC-CCC-------------------------------------------------------
Confidence 48999999999999999862 111
Q ss_pred CCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-Ce
Q 007489 262 ASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQ 338 (601)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~ 338 (601)
.......|...+.|++|+|-+ ..||+ +.|++|++||++. -..++ ..+.+|...|..+.|||+. ..
T Consensus 264 -----~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn--L~~~l-----h~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 264 -----PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN--LNKPL-----HTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred -----CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh--cccCc-----eeccCCCcceEEEEeCCCCCce
Confidence 111223456889999999965 55666 5799999999996 22233 6788999999999999965 57
Q ss_pred EEEEecCCcEEEEEcCCCceeeeeccCccccccc---CCCCCCCeeEEEEccCCCE-EEEEecCCeEEEEEcCC
Q 007489 339 LIIAGHDRRIYVVDVSSSELLHTFTPCREEHDRE---IQPSEPPITKMFTSSDGQW-LAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 339 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~spd~~~-las~~~dg~i~iwd~~~ 408 (601)
||+++.|+.+.|||+..-...+.-......+... -.+|...|..+.|+|+..+ |++.+.|+.+.||....
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8999999999999985422111100000000000 0249999999999998876 56888999999998753
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=6.4e-23 Score=191.44 Aligned_cols=301 Identities=18% Similarity=0.181 Sum_probs=197.6
Q ss_pred CEEeeecCCcEEEEECCCCceE---EEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhh--c
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEI---YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA--H 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~--~ 74 (601)
.||.+.+||.|.++|...-... ++|. ....|...|..+.|-|-. +|++++.|.++++||++.++++.. +
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk-----~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLK-----KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhc-----ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence 4899999999999997543221 1111 112799999999999944 899999999999999999988876 8
Q ss_pred cccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCC--------CCCC--ccccceeEEecCccccccce---
Q 007489 75 SFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPND--------GLSS--SEVIKKWIYVGSVRAHTHDV--- 140 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~h~~~v--- 140 (601)
.+|.+.|.++||.+.. ..|++|+.||.|.|||++.......+ .... ......-........|...|
T Consensus 141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss 220 (720)
T KOG0321|consen 141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS 220 (720)
T ss_pred cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence 8999999999999955 56779999999999999865421100 0000 00000000011112222222
Q ss_pred -eEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC-CCeEEEEeccccCCcCCCccCCCCCccc
Q 007489 141 -RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVP 218 (601)
Q Consensus 141 -~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 218 (601)
+.+.| .|. ..|+++|. |+.|++||++.......... ..
T Consensus 221 vTvv~f----------kDe------------------------~tlaSaga~D~~iKVWDLRk~~~~~r~ep--~~---- 260 (720)
T KOG0321|consen 221 VTVVLF----------KDE------------------------STLASAGAADSTIKVWDLRKNYTAYRQEP--RG---- 260 (720)
T ss_pred eEEEEE----------ecc------------------------ceeeeccCCCcceEEEeecccccccccCC--Cc----
Confidence 23333 233 48998888 99999999997442211110 00
Q ss_pred eeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCc
Q 007489 219 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVK 297 (601)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~ 297 (601)
+-.+... ......+.++.....|.+|.+ +.|+.
T Consensus 261 ------------------------~~~~~t~----------------------skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 261 ------------------------SDKYPTH----------------------SKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred ------------------------ccCccCc----------------------ccceeeeEEEEecCCCCeEEEEecCCc
Confidence 0000000 011245777778787877666 89999
Q ss_pred cEEEEeecCCCCcceEEEeeecCCcCcc--ceeEEEEccCCCeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCC
Q 007489 298 PSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQ 374 (601)
Q Consensus 298 v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~ 374 (601)
|++|++..-..... ..+.++.. .-..-..+||+.++++|+.|...++|.+.+.+ ....+.+
T Consensus 295 Iy~ynm~s~s~sP~------~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G---------- 358 (720)
T KOG0321|consen 295 IYFYNMRSLSISPV------AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG---------- 358 (720)
T ss_pred EEEEeccccCcCch------hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC----------
Confidence 99999986221111 12222221 11223578999999999999999999997765 3344555
Q ss_pred CCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCc
Q 007489 375 PSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 375 ~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~ 409 (601)
|...|++++|.|.. .-+|+++.|.+++||++..+
T Consensus 359 -ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 -HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 89999999998843 34667799999999999543
No 140
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=6.2e-22 Score=175.19 Aligned_cols=307 Identities=17% Similarity=0.219 Sum_probs=212.3
Q ss_pred ceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccc---------hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEE
Q 007489 37 ELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT---------LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105 (601)
Q Consensus 37 ~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 105 (601)
..+|.++.|.++. .|+||+.|..|++|-+..+. .+..+..|...|+++.|+|+|..|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4578999999876 89999999999999885433 345678899999999999999999999999999999
Q ss_pred EeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEE
Q 007489 106 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 185 (601)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (601)
....-..-..+. ......+.|.....+++|..+|..++|+ |++. ++
T Consensus 93 k~~~~~~~~~d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws---------~d~~------------------------~l 138 (434)
T KOG1009|consen 93 KQGDVRIFDADT-EADLNKEKWVVKKVLRGHRDDIYDLAWS---------PDSN------------------------FL 138 (434)
T ss_pred EecCcCCccccc-hhhhCccceEEEEEecccccchhhhhcc---------CCCc------------------------ee
Confidence 877422211111 2233346799999999999999999998 8887 99
Q ss_pred EEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcc
Q 007489 186 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 265 (601)
Q Consensus 186 ~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 265 (601)
++++.|..+++||+.....
T Consensus 139 ~s~s~dns~~l~Dv~~G~l------------------------------------------------------------- 157 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQL------------------------------------------------------------- 157 (434)
T ss_pred eeeeccceEEEEEecccee-------------------------------------------------------------
Confidence 9999999999999986332
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecC------------------CcCccc
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQL------------------PRKLQF 326 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 326 (601)
......|...+..++|.|-++++++ +.|...+.+.+... ..+..+....+ .....-
T Consensus 158 --~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~---~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 158 --LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK---QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred --EeeccccccccceeecchhhhhhhhhccCcccceeeeeee---eeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 2222233455556666666666666 55555555544431 00000000000 000113
Q ss_pred eeEEEEccCCCeEEEEec----CC-----cEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEcc---------
Q 007489 327 AHSMIFSYDSSQLIIAGH----DR-----RIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSS--------- 387 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~~~----dg-----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--------- 387 (601)
...++|+|||.+|++... .+ ..++|+-... ++...+.. ...+...+.|+|
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-----------~~k~~lavr~~pVy~elrp~~ 301 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-----------PKKPALAVRFSPVYYELRPLS 301 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC-----------CCcceEEEEeeeeEEEecccc
Confidence 467789999999887643 22 2344543211 12223332 333444444443
Q ss_pred ---------CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 007489 388 ---------DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 456 (601)
Q Consensus 388 ---------d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 456 (601)
-+-.+|.++.+ .|+|||.++..+...+...|-..++.++|++ |+..|+..+.||-..+-.++..++.
T Consensus 302 ~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 302 SEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhcc
Confidence 23344555555 6999999999999888888889999999999 9999999999999999888888763
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-22 Score=182.84 Aligned_cols=285 Identities=16% Similarity=0.164 Sum_probs=208.3
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeE--EEEcCCCcEEEeeCCccc---hhhhccccccceEEE
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL--VSADSTGSVQFWDSRHGT---LLQAHSFHKGDVNAL 84 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l--~s~~~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l 84 (601)
.++|||+...+..-.+.- ..-+-.+.+++|+....| ++.+.|..|++|.-. |+ ....-+.....-.|+
T Consensus 13 ~~kl~D~s~~~~~~~~~~------~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVH------QTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred ceEEeecccccCcccccc------CCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccchHHHH
Confidence 699999976554444430 011233999999987744 445678889999654 33 211111112234555
Q ss_pred EEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccC
Q 007489 85 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 164 (601)
Q Consensus 85 ~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~ 164 (601)
+......++++||..+.|+|||+....+ .+.+..|...|.++.+. -.+.
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-----------------hr~lkdh~stvt~v~YN---------~~De----- 134 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLI-----------------HRFLKDHQSTVTYVDYN---------NTDE----- 134 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHH-----------------hhhccCCcceeEEEEec---------CCcc-----
Confidence 5555668999999999999999997654 66788999999999986 3333
Q ss_pred CCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEe
Q 007489 165 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL 244 (601)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~ 244 (601)
+|++++..|.|.+..+.+...-..+.
T Consensus 135 -------------------yiAsvs~gGdiiih~~~t~~~tt~f~----------------------------------- 160 (673)
T KOG4378|consen 135 -------------------YIASVSDGGDIIIHGTKTKQKTTTFT----------------------------------- 160 (673)
T ss_pred -------------------eeEEeccCCcEEEEecccCcccccee-----------------------------------
Confidence 99999999999998887643222211
Q ss_pred eccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCc
Q 007489 245 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPR 322 (601)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~ 322 (601)
.+....++-+.++|..+++.+ +.+|.|.+||... .... ......
T Consensus 161 ---------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g---~sp~----~~~~~~ 206 (673)
T KOG4378|consen 161 ---------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---MSPI----FHASEA 206 (673)
T ss_pred ---------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---CCcc----cchhhh
Confidence 111234567778888877666 7899999999985 2222 134567
Q ss_pred CccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 323 KLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 323 ~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
|..+...|+|+|.. .+|++.+.|..|.+||..+.+....+. ...+.+.++|+++|.+|++|...|.|
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------------y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------------YSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceee------------ecCCcceeeecCCceEEEeecCCceE
Confidence 88899999999954 678889999999999998777776666 46689999999999999999999999
Q ss_pred EEEEcCCceEEEEeeccCCCceeEEEecCCCC
Q 007489 402 YIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 433 (601)
Q Consensus 402 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 433 (601)
..||+...+........|...|++++|-| ..
T Consensus 275 i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 275 IAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred EEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 99999877654444445677899999998 54
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-21 Score=166.23 Aligned_cols=266 Identities=14% Similarity=0.180 Sum_probs=191.5
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
.+|..-|.++.|.+.|+.+++|+.|++|+|||.+... ..|.+....+.|.+.|..+.|.+|..
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------~~W~~Ts~Wrah~~Si~rV~WAhPEf---- 72 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------GTWSCTSSWRAHDGSIWRVVWAHPEF---- 72 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------CceEEeeeEEecCCcEEEEEecCccc----
Confidence 4688999999999999999999999999999985544 57999999999999999999974321
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|..+++++.|+++.+|.-.... +..+.
T Consensus 73 ---------------------------GqvvA~cS~Drtv~iWEE~~~~-~~~~~------------------------- 99 (361)
T KOG2445|consen 73 ---------------------------GQVVATCSYDRTVSIWEEQEKS-EEAHG------------------------- 99 (361)
T ss_pred ---------------------------cceEEEEecCCceeeeeecccc-ccccc-------------------------
Confidence 3499999999999999854211 00000
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
+ .+.....+. .....|+.+.|.|. |-.+|+ +.||.+|||+.... ....
T Consensus 100 -------~--------------------~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp-~nLs 150 (361)
T KOG2445|consen 100 -------R--------------------RWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP-MNLS 150 (361)
T ss_pred -------c--------------------eeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc-cccc
Confidence 0 111222222 23477999999985 556666 79999999998651 1222
Q ss_pred eEEEeee------cCCcCccceeEEEEccC---CCeEEEEecC-----CcEEEEEcCCCc----eeeeeccCcccccccC
Q 007489 312 EWIINKR------QLPRKLQFAHSMIFSYD---SSQLIIAGHD-----RRIYVVDVSSSE----LLHTFTPCREEHDREI 373 (601)
Q Consensus 312 ~~~~~~~------~~~~~~~~v~~i~~s~d---~~~l~~~~~d-----g~i~vwd~~~~~----~~~~~~~~~~~~~~~~ 373 (601)
.|++... ....+..+..|+.|+|. ..+||+|+.+ +.+.||....+. .+.++..
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d--------- 221 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD--------- 221 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC---------
Confidence 3444321 11234456789999873 3578888876 478899874432 2333443
Q ss_pred CCCCCCeeEEEEccC----CCEEEEEecCCeEEEEEcCCce-----------------EEEEeec--cCCCceeEEEecC
Q 007489 374 QPSEPPITKMFTSSD----GQWLAAVNCFGDVYIFNLEIQR-----------------QHWFISR--LEGASVTAAGFPP 430 (601)
Q Consensus 374 ~~~~~~i~~l~~spd----~~~las~~~dg~i~iwd~~~~~-----------------~~~~~~~--~~~~~v~~l~~~p 430 (601)
|..+|+.|+|.|+ -.+||+++.|| |+||++.... .+..+.. -|...|+.+.|+-
T Consensus 222 --~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 222 --HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred --CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 9999999999996 34799999999 9999986311 1111221 2557999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC
Q 007489 431 QNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.|..|++.+.||+|++|...-
T Consensus 299 -tGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 299 -TGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -eeeEEeecCCCceeeehhhhh
Confidence 999999999999999997653
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.5e-24 Score=201.83 Aligned_cols=252 Identities=14% Similarity=0.209 Sum_probs=210.0
Q ss_pred EeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 3 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
+++..+-.+++||.+. +. .|...|.++..-..+ .+++|+.|..+-+|....-..+..+.+|..+|
T Consensus 8 m~~~~~t~Lr~~~~~~------~~--------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespI 73 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTRE------FV--------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPI 73 (825)
T ss_pred ceeeeeeccccccchh------hh--------hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcc
Confidence 3444555677777542 22 688888888876666 78999999999999998777788899999999
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
.++.|+++..+|++|+.+|+|++||++.... +..+.+|..++.++.|+ |-+.
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~-----------------vrtLtgh~~~~~sv~f~---------P~~~-- 125 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKI-----------------VRTLTGHLLNITSVDFH---------PYGE-- 125 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhhhhh-----------------hhhhhccccCcceeeec---------cceE--
Confidence 9999999999999999999999999998875 77889999999999988 7776
Q ss_pred ccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCee
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 241 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 241 (601)
+.++|+.|+.+.+||.+...
T Consensus 126 ----------------------~~a~gStdtd~~iwD~Rk~G-------------------------------------- 145 (825)
T KOG0267|consen 126 ----------------------FFASGSTDTDLKIWDIRKKG-------------------------------------- 145 (825)
T ss_pred ----------------------EeccccccccceehhhhccC--------------------------------------
Confidence 77888888888888876311
Q ss_pred EEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCC
Q 007489 242 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP 321 (601)
Q Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 321 (601)
+. ....
T Consensus 146 ---------------------------------------------------------------------c~-----~~~~ 151 (825)
T KOG0267|consen 146 ---------------------------------------------------------------------CS-----HTYK 151 (825)
T ss_pred ---------------------------------------------------------------------ce-----eeec
Confidence 00 1123
Q ss_pred cCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 322 RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 322 ~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
+|...+..+.|+|+|++++.+++|.+++|||+..|+.+.+|.. |...+..+.|+|..-++++|+.|++|
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-----------~e~~v~sle~hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-----------HEGKVQSLEFHPLEVLLAPGSSDRTV 220 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc-----------ccccccccccCchhhhhccCCCCcee
Confidence 3556778899999999999999999999999999999999998 89999999999999999999999999
Q ss_pred EEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCC
Q 007489 402 YIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 443 (601)
Q Consensus 402 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg 443 (601)
++||+++.+.+...... ...|.++.|+| ++..+++|..+.
T Consensus 221 ~f~dletfe~I~s~~~~-~~~v~~~~fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 221 RFWDLETFEVISSGKPE-TDGVRSLAFNP-DGKIVLSGEQIS 260 (825)
T ss_pred eeeccceeEEeeccCCc-cCCceeeeecC-CceeeecCchhh
Confidence 99999988876555443 36899999999 998888876553
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7.5e-22 Score=177.22 Aligned_cols=295 Identities=16% Similarity=0.144 Sum_probs=202.2
Q ss_pred CCceEEEEEEEeeCC---eEEEEcCCCcEEEeeCCccc----hhhhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEE
Q 007489 35 GPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGT----LLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g---~l~s~~~dg~i~vwd~~~~~----~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~ 106 (601)
-+...|++++|+|.. .+++|+.-|.|-+||+.+.+ -+..+..|.++|.+|.|+| +-..+++.+.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 688999999999976 68899999999999995332 3455778999999999999 457899999999999999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
+++..... +..+..-......+.|+ .+.. .++
T Consensus 264 ~~~~i~e~---------------v~s~~~d~~~fs~~d~~---------~e~~------------------------~vl 295 (498)
T KOG4328|consen 264 FEGNISEE---------------VLSLDTDNIWFSSLDFS---------AESR------------------------SVL 295 (498)
T ss_pred ecchhhHH---------------HhhcCccceeeeecccc---------CCCc------------------------cEE
Confidence 99865300 11111111122333332 2322 555
Q ss_pred EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 187 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 187 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
.+..=|.+.+||.++.... .|.+
T Consensus 296 ~~~~~G~f~~iD~R~~~s~-------------------------------------~~~~-------------------- 318 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSE-------------------------------------YENL-------------------- 318 (498)
T ss_pred EeecccceEEEEeecCCcc-------------------------------------chhh--------------------
Confidence 5555557778887763210 0100
Q ss_pred EEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec
Q 007489 267 LVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH 344 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~ 344 (601)
.-|...|+.++++|.. .++|+ +.|++.+|||++.-..... .......|...|.+..|||++-.|++.+.
T Consensus 319 -----~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----p~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 319 -----RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred -----hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----cceecccccceeeeeEEcCCCCceEeecc
Confidence 1123579999999976 45666 7999999999986322221 01334567889999999998888999999
Q ss_pred CCcEEEEEc----CCCceeeeeccCcccccccCCCCCCC--eeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 345 DRRIYVVDV----SSSELLHTFTPCREEHDREIQPSEPP--ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 345 dg~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
|..|+|||. ....++.++..... +..+ ....+|.|+..++++|..-..|-|||-..++.+..+...
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~--------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNR--------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CCceEEeecccccccCCccceeeccCc--------ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 999999997 33344444442110 2222 335689999999999999999999999999866554433
Q ss_pred CCCceeE-EEecCCCCCEEEEE-eCCCeEEEEEcCC
Q 007489 419 EGASVTA-AGFPPQNNNVLIIT-TSSNQVYVFDVEA 452 (601)
Q Consensus 419 ~~~~v~~-l~~~p~~~~~l~~~-~~dg~v~vwd~~~ 452 (601)
....|.+ ..|+| -+..+++| +..|.|+||.-+.
T Consensus 462 ~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 462 ESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccccceeecc-cccceeccCCccceEEEEecCC
Confidence 3333433 57999 76645444 5678999986544
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.9e-22 Score=168.30 Aligned_cols=274 Identities=15% Similarity=0.162 Sum_probs=191.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+||.||.|.|||+.|...-+.+. +|..+|.+++||+|| .|++++.|..|.+||+..|.+++++. ..+
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~ls--------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~s 107 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLS--------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDS 107 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhh--------ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccC
Confidence 58999999999999999988777777 899999999999999 99999999999999999999999888 578
Q ss_pred ceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc-ccceeE----EEeeccccCCC
Q 007489 80 DVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH-THDVRA----LTVAVPISRED 153 (601)
Q Consensus 80 ~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~----l~~~~~~~~~~ 153 (601)
+|+.+.|+|.. +..++.-.+..-.+-++..... ..+... ..+... ..|.
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h------------------~~Lp~d~d~dln~sas~~~fd------- 162 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH------------------SVLPKDDDGDLNSSASHGVFD------- 162 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCce------------------eeccCCCcccccccccccccc-------
Confidence 99999999944 3344443343344444443221 000000 000000 0111
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
+.| +++++|..-|.+.+++..+.+....+
T Consensus 163 --r~g------------------------~yIitGtsKGkllv~~a~t~e~vas~------------------------- 191 (405)
T KOG1273|consen 163 --RRG------------------------KYIITGTSKGKLLVYDAETLECVASF------------------------- 191 (405)
T ss_pred --CCC------------------------CEEEEecCcceEEEEecchheeeeee-------------------------
Confidence 333 49999999999999998874322111
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcce
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
+......|..+.++-.|++|+. +.|..||.|++..-.....-
T Consensus 192 -------------------------------------rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 192 -------------------------------------RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred -------------------------------------eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 1111255778889999999999 89999999998731111000
Q ss_pred EEEe-eecCCc--CccceeEEEEccCCCeEEEEec-CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC
Q 007489 313 WIIN-KRQLPR--KLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 388 (601)
Q Consensus 313 ~~~~-~~~~~~--~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 388 (601)
-.+. ..++.. ....-.+++||.+|.|++.++. ...++||....|.+++.+.+. .......+.|+|-
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~----------kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT----------KGEELLDVNWHPV 304 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC----------chhheeecccccc
Confidence 0000 000100 0113467899999999988775 356999999999999999983 2256778999999
Q ss_pred CCEEEEEecCCeEEEEEcC
Q 007489 389 GQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 389 ~~~las~~~dg~i~iwd~~ 407 (601)
...+++- ..|.|+||...
T Consensus 305 rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeeeeec-cCCceEEEEee
Confidence 8888877 78899999754
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=8.1e-21 Score=178.28 Aligned_cols=270 Identities=16% Similarity=0.174 Sum_probs=200.4
Q ss_pred EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCC
Q 007489 39 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 117 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 117 (601)
.|+.++|-||| .|+.+.. ..+.++|...|.+++++++|...|.|++|+.||+.+++|+.|..|.+|+..-..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG------ 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG------ 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc------
Confidence 89999999999 6555443 479999999999999999999999999999999999999999999999865432
Q ss_pred CCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEE
Q 007489 118 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 197 (601)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~ 197 (601)
.....|++.|.+|.|. |-.. .|++++.. ..-+|
T Consensus 87 -------------~LkYSH~D~IQCMsFN---------P~~h------------------------~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 87 -------------ILKYSHNDAIQCMSFN---------PITH------------------------QLASCSLS-DFGLW 119 (1081)
T ss_pred -------------eeeeccCCeeeEeecC---------chHH------------------------Hhhhcchh-hcccc
Confidence 2335789999999998 6665 77777654 34566
Q ss_pred eccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCC
Q 007489 198 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 275 (601)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (601)
.......... .....+.+.+|+.||++++-+- |+|.|-+-...+ +...+-..+..
T Consensus 120 S~~qK~V~K~---------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe--------------k~~I~Rpgg~N 176 (1081)
T KOG1538|consen 120 SPEQKSVSKH---------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE--------------KVKIERPGGSN 176 (1081)
T ss_pred ChhhhhHHhh---------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc--------------ceEEeCCCCCC
Confidence 6554221111 1224667788999999888754 777766322111 11222222346
Q ss_pred CCeEEEEEcCCC-----CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 276 RKIICSTISNSG-----MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 276 ~~i~~~~~s~~g-----~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
.+|.+++|+|.. ..+++ ....++..|.++. ..+ .+...-+ -.-.|+.+.++|.+++.|+.|+.+.
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~I---gk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQI---GKDRALN--FDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eee---cccccCC--CCchhheeccCCcEEEEccCCCceE
Confidence 789999999963 34555 5667777887763 221 1111111 1337899999999999999999999
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
+|-. .|-.+.++.. ...+|+.++..|++++++.|+.||+|..|++
T Consensus 248 ~fTR-~GvrLGTvg~-----------~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 248 LFTR-DGVRLGTVGE-----------QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEee-cCeEEeeccc-----------cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9984 4777777766 6789999999999999999999999999997
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=192.96 Aligned_cols=243 Identities=15% Similarity=0.177 Sum_probs=185.8
Q ss_pred EEEEEEEeeCC--eEEEEcCCCcEEEeeCCc---cchhhhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcC
Q 007489 39 CIWSLLSLRCG--TLVSADSTGSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 39 ~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~---~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.+..|.|.... .|++++..|.|.+||+.. .+++..|..|+..|+++.|++. ..+|++||.||.|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 34557777322 899999999999999986 6778899999999999999984 57888999999999999998764
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
...+++....|+.+.|+ |... +.++++...|
T Consensus 169 -----------------~~t~~~nSESiRDV~fs---------p~~~-----------------------~~F~s~~dsG 199 (839)
T KOG0269|consen 169 -----------------KSTFRSNSESIRDVKFS---------PGYG-----------------------NKFASIHDSG 199 (839)
T ss_pred -----------------cccccccchhhhceeec---------cCCC-----------------------ceEEEecCCc
Confidence 45666677778888877 3221 3666666666
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|.+||++..
T Consensus 200 ~lqlWDlRqp---------------------------------------------------------------------- 209 (839)
T KOG0269|consen 200 YLQLWDLRQP---------------------------------------------------------------------- 209 (839)
T ss_pred eEEEeeccCc----------------------------------------------------------------------
Confidence 6666666530
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 273 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
... ...+..|.++|.++.|+|++.+||+|+.|+.|+|||
T Consensus 210 ------------------------------------~r~-----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 210 ------------------------------------DRC-----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred ------------------------------------hhH-----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 111 145678999999999999999999999999999999
Q ss_pred cCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCE-EEEEe--cCCeEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 353 VSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW-LAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~-las~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
..+.+ .+.++. ...+|.+++|-|..++ ||+++ .|-.|+|||+...-.....-.-|...++.++
T Consensus 249 ~t~~~~~~~~tIn------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~ 316 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIA 316 (839)
T ss_pred ccCCCccceeEEe------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccccee
Confidence 97654 344444 5678999999998775 55554 5778999999765443333234667899999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
|...|...|.+++.|+.|..-.+++.
T Consensus 317 W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 317 WDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccCCCceeeEeecCccHHHHhhhhcc
Confidence 98756778899999998877666544
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2.8e-21 Score=180.27 Aligned_cols=111 Identities=11% Similarity=0.163 Sum_probs=90.6
Q ss_pred eEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 338 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 338 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
+||+++.||.|++|.+..+..-.... ..+..+..|...|+++.|+|- ...|++++.|-+|++||+.+++....+.
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~----tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~ 717 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEM----TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV 717 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccC----CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec
Confidence 78999999999999986543211111 112233349999999999994 5689999999999999999998877777
Q ss_pred ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 417 RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 417 ~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
. |...|..++|+| +|+.+++.+.||+|+||+..+++
T Consensus 718 g-HtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 718 G-HTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred c-CcCceeEEEECC-CCcceeeeecCceEEEeCCCCCC
Confidence 5 567999999999 99999999999999999998876
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=5.9e-22 Score=183.60 Aligned_cols=321 Identities=16% Similarity=0.180 Sum_probs=218.3
Q ss_pred hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
.+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ +.... ....|++++|+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-----------------vr~~~-~d~~I~~vaw~------ 450 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-----------------VRTVQ-FDSEIRSVAWN------ 450 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-----------------EEEEe-ecceeEEEEec------
Confidence 4578999999999999999999999999999999999985 43332 24589999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCC-CccCCCCCccceeeeeccccCCCe
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP-HEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
|.+. ..++....+..+.+.+..-...+.. .........+ .- -.|+
T Consensus 451 ---P~~~-----------------------~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~------~~-~~p~- 496 (733)
T KOG0650|consen 451 ---PLSD-----------------------LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAP------NE-SEPD- 496 (733)
T ss_pred ---CCCC-----------------------ceeEEEEecCceEEeCccccchhhhcchhhhhhcCC------Cc-cCCc-
Confidence 7664 1333334444466655443211111 0000000000 00 0001
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E---cCCccEEEEeecCC
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S---DHVKPSLFELKKGK 307 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~---~~~~v~l~~~~~~~ 307 (601)
..+..|.-....... .-..+...+...|..+.|+..|.||++ . ....|.|+++....
T Consensus 497 -------~~~~~W~~~~~~e~~------------~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~ 557 (733)
T KOG0650|consen 497 -------AAVVTWSRASLDELE------------KGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK 557 (733)
T ss_pred -------ccceeechhhhhhhc------------cceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence 233445433222111 124556677799999999999999998 2 34567788887511
Q ss_pred CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 308 VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
. ...+....+.+.++.|+|...+|++++. ..|+|||+...++++.+.. ....|..++.+|
T Consensus 558 ---s-----Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-----------g~kwiS~msihp 617 (733)
T KOG0650|consen 558 ---S-----QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-----------GSKWISSMSIHP 617 (733)
T ss_pred ---c-----cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-----------CCeeeeeeeecC
Confidence 1 1223334567899999999999998885 5699999988888888776 678899999999
Q ss_pred CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcC
Q 007489 388 DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
.|.-|+.|+.|+.+..||++-....+..-.+|...+++++|++ .-.++++|+.||++.||.-.- .+.....+....+
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~V--Y~Dl~qnpliVPl 694 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMV--YNDLLQNPLIVPL 694 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeee--ehhhhcCCceEee
Confidence 9999999999999999999866443333345778899999999 889999999999999986321 1111122222335
Q ss_pred cccccCCC----cEEEEEeCCCCCCCEEEEEcCc
Q 007489 468 RRYQEFPG----EVIGLSFSPSPSSSSVIIYSAR 497 (601)
Q Consensus 468 ~~~~~~~~----~v~~i~~~p~~~~~~~~~~~~~ 497 (601)
+.+.+|.. .|.++.|+|. .-|+++..
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~----qpWLfsAG 724 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPR----QPWLFSAG 724 (733)
T ss_pred eeccCceeecccceEeecccCC----CceEEecC
Confidence 66777864 4899999998 55555433
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=5e-21 Score=162.20 Aligned_cols=299 Identities=14% Similarity=0.108 Sum_probs=211.8
Q ss_pred CCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccch------h---------hhccccccceEEEEEeC-CCCEEE
Q 007489 33 GSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL------L---------QAHSFHKGDVNALAAAP-SHNRVF 94 (601)
Q Consensus 33 ~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~------~---------~~~~~h~~~V~~l~~s~-~~~~l~ 94 (601)
.+.|.+.|+++...+.. ++++|+.||.|.+||++.... + ..-.+|.-.|..+.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 45799999999998754 899999999999999975431 1 11235888999999999 667888
Q ss_pred EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccc
Q 007489 95 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSY 174 (601)
Q Consensus 95 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 174 (601)
+++.|.++++||.++.+. .....-+..|.+-+++ |-..
T Consensus 119 ssSFDhtlKVWDtnTlQ~------------------a~~F~me~~VYshamS---------p~a~--------------- 156 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE------------------AVDFKMEGKVYSHAMS---------PMAM--------------- 156 (397)
T ss_pred cccccceEEEeeccccee------------------eEEeecCceeehhhcC---------hhhh---------------
Confidence 999999999999998663 1111224455555554 2221
Q ss_pred cccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCccc
Q 007489 175 HKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES 254 (601)
Q Consensus 175 ~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~ 254 (601)
..-++++|..|-.|++.|+....
T Consensus 157 ------sHcLiA~gtr~~~VrLCDi~SGs--------------------------------------------------- 179 (397)
T KOG4283|consen 157 ------SHCLIAAGTRDVQVRLCDIASGS--------------------------------------------------- 179 (397)
T ss_pred ------cceEEEEecCCCcEEEEeccCCc---------------------------------------------------
Confidence 01266777777799999987622
Q ss_pred CCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEee-------ecCCcCcc
Q 007489 255 RSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINK-------RQLPRKLQ 325 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~-------~~~~~~~~ 325 (601)
......+|...|.++.|+|...++.. +.|+.+++||++...+.-..++... ...+.|.+
T Consensus 180 ------------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 180 ------------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred ------------ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc
Confidence 11233456788999999999988766 6999999999987322222211111 23456778
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCce-eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEE
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iw 404 (601)
.+..++|+.|+.++++++.|..+++|+..+|+. ++.+-.....+ ....-..+. +-+...++---.++.+.++
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~------~~~~~~~~~-~~~s~vfv~~p~~~~lall 320 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ------TTSFAVHIQ-SMDSDVFVLFPNDGSLALL 320 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCcccccccccccccc------cccceEEEe-ecccceEEEEecCCeEEEE
Confidence 999999999999999999999999999988763 22222111000 011111122 3344455555566889999
Q ss_pred EcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 405 NLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 405 d~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
++-.+..+..+.. |...+.+..+.| +-+.+.++..|+.|..|-+.
T Consensus 321 ~~~sgs~ir~l~~-h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 321 NLLEGSFVRRLST-HLKRINCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EccCceEEEeeec-ccceeeEEeecC-chhhhhccccCCcccccccc
Confidence 9999998877775 467899999999 88899999999999999873
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=5.1e-22 Score=175.73 Aligned_cols=297 Identities=19% Similarity=0.170 Sum_probs=188.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEE-EEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC--------c---
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYR-ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--------H--- 67 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~--------~--- 67 (601)
+||||+.|..|+||-+..+..-.. .++.....+..|...|+++.|+|+| .|+||+.+|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 489999999999999865432110 1111122344899999999999999 99999999999999765 2
Q ss_pred -----cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeE
Q 007489 68 -----GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 142 (601)
Q Consensus 68 -----~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 142 (601)
......+.+|...|..++|+|++.++++++.|..+++||+..+.. ...+..|.+.+..
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-----------------~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-----------------LAILDDHEHYVQG 170 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-----------------Eeeccccccccce
Confidence 112345678999999999999999999999999999999999886 7888999999999
Q ss_pred EEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCc-------------
Q 007489 143 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE------------- 209 (601)
Q Consensus 143 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~------------- 209 (601)
++|. |-++ ++++-+.|...+.+++...+....+.
T Consensus 171 vawD---------pl~q------------------------yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 171 VAWD---------PLNQ------------------------YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred eecc---------hhhh------------------------hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 9998 7776 56666666544444443322111111
Q ss_pred ---cCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC
Q 007489 210 ---ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 286 (601)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 286 (601)
.............+..+|+|+|.++++.+|.+++=.-..
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~-------------------------------------- 259 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF-------------------------------------- 259 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee--------------------------------------
Confidence 000111111223334444444444444433322111000
Q ss_pred CCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc------------------cCCCeEEEEecCCcE
Q 007489 287 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS------------------YDSSQLIIAGHDRRI 348 (601)
Q Consensus 287 g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s------------------~d~~~l~~~~~dg~i 348 (601)
.+..++|+-.. -. .....++....++..+.|+ |-+-.+|+++. ..|
T Consensus 260 --------~n~tYvfsrk~--l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~sv 323 (434)
T KOG1009|consen 260 --------RNTSYVFSRKD--LK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSV 323 (434)
T ss_pred --------eceeEeecccc--cc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceE
Confidence 00111111100 00 0001122222222222222 23334566664 469
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~ 411 (601)
++||.++..++...... |-..|+.++||+||.+|+..+.||...+--++..++
T Consensus 324 yvydtq~~~P~~~v~ni----------hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNI----------HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeccccccceEEEeee----------eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 99999888877766654 888999999999999999999999888877776654
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.1e-21 Score=167.69 Aligned_cols=255 Identities=14% Similarity=0.148 Sum_probs=180.1
Q ss_pred CeEEEEEeC--CeeEEeeccccCCcccCCCCCC-CCCcceEEEEEecCCCCeEEEEEcCC--CCEEEEEcCCccEEEEee
Q 007489 230 TSLLLVQYS--CRLDILSVRLENNVESRSSSGG-HASTSLLVQVKSKASRKIICSTISNS--GMLFAYSDHVKPSLFELK 304 (601)
Q Consensus 230 ~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~~~v~l~~~~ 304 (601)
+..+.++.+ |.+.||++...-.......... ....+.+.++. .|...-..++|||- |.++..-.-+.|++|...
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccccCccccceEeeeec
Confidence 344555544 8999999875443321111211 12233444443 34567789999993 333322355789999887
Q ss_pred cCCCCcceEEEeeecCCcCccceeEEEEccC-CCeEEEEecCCcEEEEEcCCCceeeee--ccCcccccccCCCCCCCee
Q 007489 305 KGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELLHTF--TPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d-~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~ 381 (601)
. .-|.+....+.+|...|-.++|||. ...|++|+.||.|+|||++.+.....+ +. |.+.|+
T Consensus 243 ~-----g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA-----------h~sDVN 306 (440)
T KOG0302|consen 243 T-----GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA-----------HNSDVN 306 (440)
T ss_pred c-----CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec-----------cCCcee
Confidence 5 3488888889999999999999994 467999999999999999888422222 33 899999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCc---eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCccc-
Q 007489 382 KMFTSSDGQWLAAVNCFGDVYIFNLEIQ---RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE- 457 (601)
Q Consensus 382 ~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~- 457 (601)
.|.|+.+-.+||+|+.||+++|||+... +++..+. +|..+|+++.|+|.+...|++++.|.+|.+||+.-..-.+
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999998889999999999999998754 4444554 5778999999999777889999999999999986432100
Q ss_pred ---chhccc-CCcCcccccCC--CcEEEEEeCCCCCCCEEEEEcCceEEEEe
Q 007489 458 ---WSMQHT-FVLPRRYQEFP--GEVIGLSFSPSPSSSSVIIYSARAMCVID 503 (601)
Q Consensus 458 ---~~~~~~-~~~~~~~~~~~--~~v~~i~~~p~~~~~~~~~~~~~~~~~~~ 503 (601)
...... ...|+-+--|. ..+..+.|++. -++.++--..+++++|.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q-iPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ-IPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccC-CCCeEEEecccceeEEE
Confidence 000000 11233334464 46899999998 77788877888988876
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=6.4e-21 Score=172.82 Aligned_cols=287 Identities=13% Similarity=0.091 Sum_probs=205.1
Q ss_pred CCcEEEeeCCccchhhhccccc--cceEEEEEeCCCCEE-EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 57 TGSVQFWDSRHGTLLQAHSFHK--GDVNALAAAPSHNRV-FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 57 dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
...+++||...-+....+..|+ ..+.+++|+.....+ ++.+.|..|++|.-..... ..+ .+...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~-~Vp------------~~~k~ 77 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP-EVP------------RVRKL 77 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC-ccc------------eeecc
Confidence 3469999998765554444333 248899998765422 3456788999997665421 000 01111
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~ 213 (601)
.+. .-.|++.. ... -++++||..+.|++||++..
T Consensus 78 ~gd--~~~Cv~~~---------s~S------------------------~y~~sgG~~~~Vkiwdl~~k----------- 111 (673)
T KOG4378|consen 78 TGD--NAFCVACA---------SQS------------------------LYEISGGQSGCVKIWDLRAK----------- 111 (673)
T ss_pred ccc--hHHHHhhh---------hcc------------------------eeeeccCcCceeeehhhHHH-----------
Confidence 111 12222221 111 28999999999999998741
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~- 292 (601)
++.+....|+..|+++.++-...+||+
T Consensus 112 ----------------------------------------------------l~hr~lkdh~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 112 ----------------------------------------------------LIHRFLKDHQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred ----------------------------------------------------HHhhhccCCcceeEEEEecCCcceeEEe
Confidence 233344456788999999999999999
Q ss_pred EcCCccEEEEeecCCCCcceEEEeeecCCcC-ccceeEEEEccCCCe-EEEEecCCcEEEEEcCCCceeeeeccCccccc
Q 007489 293 SDHVKPSLFELKKGKVGQGEWIINKRQLPRK-LQFAHSMIFSYDSSQ-LIIAGHDRRIYVVDVSSSELLHTFTPCREEHD 370 (601)
Q Consensus 293 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~s~d~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 370 (601)
+..|.|.|..+.+. ... ..+... ...++-+.|+|..+. |.+++.+|.|.+||+....++..+...
T Consensus 140 s~gGdiiih~~~t~---~~t-----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~----- 206 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTK---QKT-----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA----- 206 (673)
T ss_pred ccCCcEEEEecccC---ccc-----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-----
Confidence 67788999988762 221 222222 345678899997765 677889999999999877666655543
Q ss_pred ccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 371 REIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
|..+...|+|||.. .+|++.+.|..|.+||....+....+.-- .+.++++|.+ +|.+|++|...|.|..||
T Consensus 207 -----HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~--~Plstvaf~~-~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 207 -----HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS--HPLSTVAFSE-CGTYLCAGNSKGELIAYD 278 (673)
T ss_pred -----ccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec--CCcceeeecC-CceEEEeecCCceEEEEe
Confidence 99999999999965 57789999999999999877766555532 4899999999 999999999999999999
Q ss_pred cCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 450 VEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+...+. ....+..|...|++++|-|.
T Consensus 279 ~R~~k~----------Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 279 MRSTKA----------PVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cccCCC----------CceEeeecccceeEEEeeec
Confidence 987652 34567789999999999887
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.3e-22 Score=190.86 Aligned_cols=230 Identities=14% Similarity=0.160 Sum_probs=185.2
Q ss_pred CEEeeecCCcEEEEECCC---CceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhcc
Q 007489 1 MLYSGSSDGYIRSWDAKL---GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS 75 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~ 75 (601)
+|||++..|.|.+||+.. .+.+..+. .|+..|+++.|++.. .|+||+.||+|++||++...-..++.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~--------EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFN--------EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhh--------hhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 589999999999999976 55566776 899999999999877 89999999999999999988889999
Q ss_pred ccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 76 FHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 76 ~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
+....|..+.|+| .+.+++++...|.+.+||++.... +...+.+|.+.|.++.|+
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r----------------~~~k~~AH~GpV~c~nwh-------- 229 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR----------------CEKKLTAHNGPVLCLNWH-------- 229 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccCchh----------------HHHHhhcccCceEEEeec--------
Confidence 9999999999999 678888999999999999987653 256788999999999999
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|++. +|++||.|+.|++|+.........
T Consensus 230 -Pnr~------------------------~lATGGRDK~vkiWd~t~~~~~~~--------------------------- 257 (839)
T KOG0269|consen 230 -PNRE------------------------WLATGGRDKMVKIWDMTDSRAKPK--------------------------- 257 (839)
T ss_pred -CCCc------------------------eeeecCCCccEEEEeccCCCccce---------------------------
Confidence 8775 999999999999999886221111
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE-EEEE---cCCccEEEEeecCCCCc
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYS---DHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~---~~~~v~l~~~~~~~~~~ 310 (601)
..+.. ..++.++.|-|..++ ||++ .|..|++||++. .-
T Consensus 258 ---------------------------------~tInT--iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--PY- 299 (839)
T KOG0269|consen 258 ---------------------------------HTINT--IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--PY- 299 (839)
T ss_pred ---------------------------------eEEee--cceeeeeeeccCccchhhhhhccccceEEEEeecc--cc-
Confidence 11111 266888899887654 5553 788999999986 11
Q ss_pred ceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCC
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSS 356 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~ 356 (601)
+....+..|...++.++|.. |-..|.+++.||+|..-.++++
T Consensus 300 ----IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 300 ----IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ----ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 33366778899999999976 4456888888988765554443
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1e-22 Score=192.82 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=182.6
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+++|+.|-.+-+|.+..--.+..+. +|+.+|.||.|+++. +|++|+.+|+|++||+..++.++++.+|...
T Consensus 43 ~~~Gg~~~k~~L~~i~kp~~i~S~~--------~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 43 LVTGGEDEKVNLWAIGKPNAITSLT--------GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred eccCCCceeeccccccCCchhheee--------ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC
Confidence 6899999999999987777777777 899999999999988 8999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
+.++.|+|-+.+.++|+.|+.+++||.+...+ ...+.+|...|..+.|+ |+|+
T Consensus 115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc-----------------~~~~~s~~~vv~~l~ls---------P~Gr- 167 (825)
T KOG0267|consen 115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC-----------------SHTYKSHTRVVDVLRLS---------PDGR- 167 (825)
T ss_pred cceeeeccceEEeccccccccceehhhhccCc-----------------eeeecCCcceeEEEeec---------CCCc-
Confidence 99999999999999999999999999986554 56666777777777776 7766
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
++++|+.|..+++||+..
T Consensus 168 -----------------------~v~~g~ed~tvki~d~~a--------------------------------------- 185 (825)
T KOG0267|consen 168 -----------------------WVASGGEDNTVKIWDLTA--------------------------------------- 185 (825)
T ss_pred -----------------------eeeccCCcceeeeecccc---------------------------------------
Confidence 666666666666666543
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecC
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL 320 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~ 320 (601)
+..+ .++
T Consensus 186 --------------------------------------------------------------------gk~~-----~ef 192 (825)
T KOG0267|consen 186 --------------------------------------------------------------------GKLS-----KEF 192 (825)
T ss_pred --------------------------------------------------------------------cccc-----ccc
Confidence 1111 345
Q ss_pred CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 321 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 321 ~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
..|...+.++.|+|..-+++.|+.|++|++||+++.+.+....+ ....|.+.+|+|+++.+++|....
T Consensus 193 ~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-----------~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-----------ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-----------ccCCceeeeecCCceeeecCchhh
Confidence 56677778888999888999999999999999998888877776 678899999999999999887654
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=4.7e-22 Score=171.03 Aligned_cols=257 Identities=16% Similarity=0.178 Sum_probs=177.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhcc---
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS--- 75 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~--- 75 (601)
+||+|+.-|.|+|.|+.++++...+. +|...|+.+.|.|+. ++++++.|..|++|++++..++..|-
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~--------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYR--------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred eEEeecceeEEEEEecchhhhcccee--------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 57889999999999999999999998 999999999999998 88999999999999999999988765
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCC----CCccc-------cceeEEecCccccccceeEEE
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL----SSSEV-------IKKWIYVGSVRAHTHDVRALT 144 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~h~~~v~~l~ 144 (601)
+|...|+++.|+.+|.+|+++|.|.++++|++...+....-.. ...+. ...+....+...|.+.|.++.
T Consensus 179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 6999999999999999999999999999999986543100000 00000 000000112233444444444
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC-CcCCCccCCCCCccceeeee
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-KFSPHEICPAPQRVPIHLVH 223 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 223 (601)
|. +++++|-+-++.|..|...... .+... .|..
T Consensus 259 w~-----------------------------------gd~ilSkscenaI~~w~pgkl~e~~~~v----kp~e------- 292 (385)
T KOG1034|consen 259 WF-----------------------------------GDFILSKSCENAIVCWKPGKLEESIHNV----KPPE------- 292 (385)
T ss_pred HH-----------------------------------hhheeecccCceEEEEecchhhhhhhcc----CCCc-------
Confidence 42 2488998999999999874321 11100 0000
Q ss_pred ccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeE--EEEEcCCCCEEEE-EcCCccEE
Q 007489 224 NTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII--CSTISNSGMLFAY-SDHVKPSL 300 (601)
Q Consensus 224 ~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~l~~-~~~~~v~l 300 (601)
+ ....+.++..+ ...|. ..+|.|-+++||. ...|++.+
T Consensus 293 -------s-------------------------------~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 293 -------S-------------------------------ATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred -------c-------------------------------ceeeeeEeccC-ccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 0 00012222222 12233 3456677888998 58899999
Q ss_pred EEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 301 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
|||+..+.... .+.........|...+||.|+..|+..+.|++|.-||..
T Consensus 334 wdL~~~ep~~~----ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKC----TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccC----ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99997443211 122222334578999999999999999999999999853
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=5.4e-20 Score=158.07 Aligned_cols=293 Identities=12% Similarity=0.106 Sum_probs=196.3
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc-ccccceeEEEeeccccCCCCCCccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
...+.|+|||..|++-+.|..+.+|++......... ...........++ .....|...+|.+-++..+ |+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q--P~t- 123 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ--PST- 123 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeEEeccCCEEEEEEeeeccccCC--Ccc-
Confidence 346789999999999999999999998654321110 0000000001111 1234566666653333222 333
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.++++.+.+.-|.+||.-+.+......
T Consensus 124 -----------------------~l~a~ssr~~PIh~wdaftG~lraSy~------------------------------ 150 (406)
T KOG2919|consen 124 -----------------------NLFAVSSRDQPIHLWDAFTGKLRASYR------------------------------ 150 (406)
T ss_pred -----------------------ceeeeccccCceeeeeccccccccchh------------------------------
Confidence 388899999999999987643211111
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
-++. + ..-....+++|+|||..|.+|....|++|++................
T Consensus 151 ---~ydh--------------------~-----de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 151 ---AYDH--------------------Q-----DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ---hhhh--------------------H-----HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence 0000 0 00134568999999999999999999999996421111111110111
Q ss_pred CCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-
Q 007489 320 LPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC- 397 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~- 397 (601)
-.+..+-+.+++|+| +.+.+++++....+-||.-..+.++..+-+ |.+.|+.++|.+||+.|.+|..
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-----------h~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-----------HGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-----------cCCCeeeEEeccCcCeecccccC
Confidence 123355788999999 555899999999999999888889988888 9999999999999999999874
Q ss_pred CCeEEEEEcCCce-EEEEeeccCC--CceeEEEecCCCCCEEEEEeCCCeEEEEEcCC-CCcccchhcccCCcCcccccC
Q 007489 398 FGDVYIFNLEIQR-QHWFISRLEG--ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA-KQLGEWSMQHTFVLPRRYQEF 473 (601)
Q Consensus 398 dg~i~iwd~~~~~-~~~~~~~~~~--~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 473 (601)
|-.|..||+...+ .++.+..+-+ ..-.-....| ++++|++|+.||.|++||+++ +.. +..+..+
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~-----------~sv~~~~ 339 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE-----------VSVTGNY 339 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc-----------ccccccc
Confidence 6789999997544 3333333222 1122345568 899999999999999999987 431 3345678
Q ss_pred CCcEEEEEeCCC
Q 007489 474 PGEVIGLSFSPS 485 (601)
Q Consensus 474 ~~~v~~i~~~p~ 485 (601)
..-+.+++++|-
T Consensus 340 sd~vNgvslnP~ 351 (406)
T KOG2919|consen 340 SDTVNGVSLNPI 351 (406)
T ss_pred cccccceecCcc
Confidence 889999999997
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=9.4e-21 Score=163.09 Aligned_cols=303 Identities=15% Similarity=0.129 Sum_probs=203.5
Q ss_pred EEeeecCCcEEEEECCCC---ceEEEEEeccCCCCCCCceEEEEEEEeeC---C--eEEEEcCCCcEEEeeCCccchhhh
Q 007489 2 LYSGSSDGYIRSWDAKLG---YEIYRITVGLGGLGSGPELCIWSLLSLRC---G--TLVSADSTGSVQFWDSRHGTLLQA 73 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~~s~~---g--~l~s~~~dg~i~vwd~~~~~~~~~ 73 (601)
+||.+.+ .+.+|..... +.+++... ..|+...+.++|+-+ + .+|.|+.-|.|+|.|+.++++...
T Consensus 58 fatvG~~-rvtiy~c~~d~~ir~lq~y~D------~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~ 130 (385)
T KOG1034|consen 58 FATVGGN-RVTIYECPGDGGIRLLQSYAD------EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN 130 (385)
T ss_pred EEEeCCc-EEEEEEECCccceeeeeeccC------CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc
Confidence 4666655 7889987633 33444432 157788888888743 3 789999999999999999999999
Q ss_pred ccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 74 HSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
+.+|...|+.|.|.|+. +++++++.|..|++|++++..+ -....-..+|...|.++.|+
T Consensus 131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--------------v~VfGG~egHrdeVLSvD~~------ 190 (385)
T KOG1034|consen 131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--------------VAVFGGVEGHRDEVLSVDFS------ 190 (385)
T ss_pred eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--------------EEEecccccccCcEEEEEEc------
Confidence 99999999999999965 7888999999999999999875 11234567899999999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
++|. .++|+|.|..|++|++...+....... +..++|++.
T Consensus 191 ---~~gd------------------------~i~ScGmDhslk~W~l~~~~f~~~lE~-------------s~~~~~~~t 230 (385)
T KOG1034|consen 191 ---LDGD------------------------RIASCGMDHSLKLWRLNVKEFKNKLEL-------------SITYSPNKT 230 (385)
T ss_pred ---CCCC------------------------eeeccCCcceEEEEecChhHHhhhhhh-------------hcccCCCCc
Confidence 7776 999999999999999984221111110 011222211
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
..---.....+ .......-|...|-|+.|- |.++++ +.++.|..|..-.- +..
T Consensus 231 ~~pfpt~~~~f----------------------p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl--~e~ 284 (385)
T KOG1034|consen 231 TRPFPTPKTHF----------------------PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKL--EES 284 (385)
T ss_pred cCcCCcccccc----------------------ccccccccccchHHHHHHH--hhheeecccCceEEEEecchh--hhh
Confidence 10000000000 0001122344556666654 467777 77888888887211 111
Q ss_pred eEEEe--------eecCCcCccce--eEEEEccCCCeEEEEecCCcEEEEEcCCCcee--eeeccCcccccccCCCCCCC
Q 007489 312 EWIIN--------KRQLPRKLQFA--HSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPP 379 (601)
Q Consensus 312 ~~~~~--------~~~~~~~~~~v--~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 379 (601)
+-++. -.++.-....| ...+|.|-++.||.|...|.|.+||++..++. .++..+. ....
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~---------~~~t 355 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK---------SGST 355 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc---------ccce
Confidence 00000 01112222233 34466777889999999999999999876642 2222211 4567
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
|...+||.|+.+|+..+.|++|.-||.
T Consensus 356 VRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 356 VRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999999999999999999985
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=4.6e-20 Score=165.85 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=204.0
Q ss_pred CEEeeecCCcEEEEECCC----CceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchh--h
Q 007489 1 MLYSGSSDGYIRSWDAKL----GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL--Q 72 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~--~ 72 (601)
++|+|..-|+|-+||+.+ ..-+..+. .|..+|.++.|+|.+ ++++.+.||+|++-|++.+..- .
T Consensus 202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--------~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~ 273 (498)
T KOG4328|consen 202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--------PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL 273 (498)
T ss_pred EEEEccCCCcEEEEecCCCCCccCceEEec--------cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHh
Confidence 479999999999999942 22344555 899999999999988 8999999999999999876543 4
Q ss_pred hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
++..-......+.|+.+...++.++.=|...+||++++... ...++.|...|.++++.
T Consensus 274 s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----------------~~~~~lh~kKI~sv~~N------ 331 (498)
T KOG4328|consen 274 SLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----------------YENLRLHKKKITSVALN------ 331 (498)
T ss_pred hcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----------------chhhhhhhcccceeecC------
Confidence 44335667788899998888888888889999999987631 45677888999999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|-.. .+|+++|.|+++++||++....... |
T Consensus 332 ---P~~p-----------------------~~laT~s~D~T~kIWD~R~l~~K~s---------------------p--- 361 (498)
T KOG4328|consen 332 ---PVCP-----------------------WFLATASLDQTAKIWDLRQLRGKAS---------------------P--- 361 (498)
T ss_pred ---CCCc-----------------------hheeecccCcceeeeehhhhcCCCC---------------------c---
Confidence 5543 4999999999999999987432111 0
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCC-CCc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK-VGQ 310 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~-~~~ 310 (601)
.-....|...|.++.|||.+-.|++ +.|..|+|||...-. .-.
T Consensus 362 -----------------------------------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 362 -----------------------------------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred -----------------------------------ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 0112245678999999998755666 899999999984100 011
Q ss_pred ceEEEeeecCC-cCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeE-EEEccC
Q 007489 311 GEWIINKRQLP-RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSD 388 (601)
Q Consensus 311 ~~~~~~~~~~~-~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spd 388 (601)
.+-.+...... .+. .....+|.|+..++++|..-..|-|+|-..++.+..+..+ ....|.+ ..|+|-
T Consensus 407 p~~~I~Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P----------~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP----------ESSTIPSVNEFHPM 475 (498)
T ss_pred ccceeeccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc----------cccccccceeeccc
Confidence 11111111111 111 2234579999999999999999999998888877776653 2334444 579998
Q ss_pred CC-EEEEEecCCeEEEEEcC
Q 007489 389 GQ-WLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 389 ~~-~las~~~dg~i~iwd~~ 407 (601)
+. ++|.++..|.|+||--+
T Consensus 476 ~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccceeccCCccceEEEEecC
Confidence 88 55555678889988644
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=163.49 Aligned_cols=246 Identities=20% Similarity=0.217 Sum_probs=186.0
Q ss_pred CCceEEEEEEEeeCC---eEEEEcCCCcEEEeeCCc----------------cchhhhccccccceEEEEEeCC-CCEEE
Q 007489 35 GPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRH----------------GTLLQAHSFHKGDVNALAAAPS-HNRVF 94 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g---~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~h~~~V~~l~~s~~-~~~l~ 94 (601)
+|.+.+..+..++-| ..++=+..|.|+|||+.. .+++.++.+|...=+.|+|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 677888888888765 456667889999999842 2466778899999999999993 23588
Q ss_pred EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEe-cCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccc
Q 007489 95 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV-GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 173 (601)
Q Consensus 95 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 173 (601)
||..-+.|++|...++. |..- ..+.+|+..|..++|+ |...
T Consensus 229 sGDc~~~I~lw~~~~g~---------------W~vd~~Pf~gH~~SVEDLqWS---------ptE~-------------- 270 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGS---------------WKVDQRPFTGHTKSVEDLQWS---------PTED-------------- 270 (440)
T ss_pred cCccccceEeeeeccCc---------------eeecCccccccccchhhhccC---------CccC--------------
Confidence 88888999999998865 4432 3567799999999998 6554
Q ss_pred ccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcc
Q 007489 174 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 253 (601)
Q Consensus 174 ~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~ 253 (601)
..|+||+.||+|++||++....
T Consensus 271 ---------~vfaScS~DgsIrIWDiRs~~~------------------------------------------------- 292 (440)
T KOG0302|consen 271 ---------GVFASCSCDGSIRIWDIRSGPK------------------------------------------------- 292 (440)
T ss_pred ---------ceEEeeecCceEEEEEecCCCc-------------------------------------------------
Confidence 4999999999999999875110
Q ss_pred cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc
Q 007489 254 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 333 (601)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 333 (601)
..++ ....|...|+.|.|+
T Consensus 293 -------------------------------------------------------~~~~------~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 293 -------------------------------------------------------KAAV------STKAHNSDVNVISWN 311 (440)
T ss_pred -------------------------------------------------------ccee------EeeccCCceeeEEcc
Confidence 0010 113455678889999
Q ss_pred cCCCeEEEEecCCcEEEEEcCC---CceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCc
Q 007489 334 YDSSQLIIAGHDRRIYVVDVSS---SELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 334 ~d~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~ 409 (601)
.+-.+||+|+.||+++|||+++ ++++.+|+. |..+|++|.|+|. ...|++++.|..|.|||+...
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-----------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-----------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCCCcceeEEe-----------ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 8888999999999999999854 467788888 9999999999995 457888899999999998422
Q ss_pred eE----------------EEEeeccCC-CceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 410 RQ----------------HWFISRLEG-ASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 410 ~~----------------~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.- ...+..+.+ ..+-.+.|+++-..+|++.+.|| +.||.
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11 001111112 46778999997788999999998 55554
No 161
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.86 E-value=6.3e-20 Score=158.05 Aligned_cols=352 Identities=14% Similarity=0.176 Sum_probs=240.6
Q ss_pred EEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEE-EeeCCeEEEEEeccCcCCCCCCCCC
Q 007489 43 LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 43 v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
.+|||+| ++|+.+. -.+.|-|..+-+..+.+.. -..|..+.|..|..+++. ...|+.|.+|++...+
T Consensus 14 c~fSp~g~yiAs~~~-yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--------- 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-YRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--------- 82 (447)
T ss_pred eeECCCCCeeeeeee-eEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------
Confidence 5799999 6666655 4899999999888877765 567888999999887775 5678899999998865
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
|. ..+......+.++.|+ |||+ .+|.+...|-+|.+|.+.
T Consensus 83 ------w~--ckIdeg~agls~~~WS---------Pdgr-----------------------hiL~tseF~lriTVWSL~ 122 (447)
T KOG4497|consen 83 ------WY--CKIDEGQAGLSSISWS---------PDGR-----------------------HILLTSEFDLRITVWSLN 122 (447)
T ss_pred ------eE--EEeccCCCcceeeeEC---------CCcc-----------------------eEeeeecceeEEEEEEec
Confidence 33 3445557788899998 8886 478888889999999998
Q ss_pred ccCCcC-CCccCCCCCccceeeeeccccCCCeEEEEEeCCe--eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 201 EFTKFS-PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR--LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
+.+... ++. ...+..++|+++|++.+..++. ...+.+. .-+.+.++..+... .-.
T Consensus 123 t~~~~~~~~p---------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~------------~c~~W~ll~~f~~d-T~D 180 (447)
T KOG4497|consen 123 TQKGYLLPHP---------KTNVKGYAFHPDGQFCAILSRRDCKDYVQIS------------SCKAWILLKEFKLD-TID 180 (447)
T ss_pred cceeEEeccc---------ccCceeEEECCCCceeeeeecccHHHHHHHH------------hhHHHHHHHhcCCC-ccc
Confidence 754321 111 1334678899999987765532 1111111 00112223333322 244
Q ss_pred eEEEEEcCCCCEEEE-E--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 278 IICSTISNSGMLFAY-S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 278 i~~~~~s~~g~~l~~-~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
.+.+.|+|||..||+ - -+..|..|... -++..++|+|.+++|++|+.|+.++|.+--
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~--------------------lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------------LGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeec--------------------cceeEEEeccccceEEeeccchhhhhhcee
Confidence 678899999999997 2 23333333221 256788999999999999999999987754
Q ss_pred CCceeeeecc-------------------------------Cc-cc---cc--------------------ccCCCCCCC
Q 007489 355 SSELLHTFTP-------------------------------CR-EE---HD--------------------REIQPSEPP 379 (601)
Q Consensus 355 ~~~~~~~~~~-------------------------------~~-~~---~~--------------------~~~~~~~~~ 379 (601)
+.+....|-. .. +. .. .......-.
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 4332222110 00 00 00 001112345
Q ss_pred eeEEEEccCCCEEEEEec--CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 007489 380 ITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE 457 (601)
Q Consensus 380 i~~l~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 457 (601)
+..++||+|..|+|+-.+ -..+.+||+...+....+... .+|.+..|+| ....|+.+.....+++|.........
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk--~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK--HPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc--cceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEe
Confidence 677999999999998754 357999999998887666554 4899999999 77788888878889999987643211
Q ss_pred chhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 458 WSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
.......|..+.|.-+ +..+.+-+.+..|..-+
T Consensus 398 ------------vP~~GF~i~~l~W~~~--g~~i~l~~kDafc~a~v 430 (447)
T KOG4497|consen 398 ------------VPKKGFNIQKLQWLQP--GEFIVLCGKDAFCVAIV 430 (447)
T ss_pred ------------cCCCCceeeeEEecCC--CcEEEEEcCCceEEEEe
Confidence 1122368999999988 56788888888887644
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=155.01 Aligned_cols=304 Identities=16% Similarity=0.126 Sum_probs=196.2
Q ss_pred CCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 34 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
++|.+.|+++.|-.+++|.+|...|.|++|++++.+....++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++..+.
T Consensus 11 Rp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~- 88 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA- 88 (323)
T ss_pred ccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc-
Confidence 389999999999999999999999999999999999888888 67889999998887 668899999999999998754
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
....|+-.++++.|+...- .+.++.. ...++.-+...
T Consensus 89 -------------------~i~i~Si~~nslgFCrfSl----~~~~k~~--------------------eqll~yp~rgs 125 (323)
T KOG0322|consen 89 -------------------FISIHSIVVNSLGFCRFSL----VKKPKNS--------------------EQLLEYPSRGS 125 (323)
T ss_pred -------------------eEEEeeeecccccccccee----ccCCCcc--------------------hhheecCCccc
Confidence 2233444455555541100 0111100 00111111110
Q ss_pred -eEEEEeccccCCcCCCccCCCCCccceeeeeccccC--CCeE-EEEEe--CCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 193 -KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS--HTSL-LLVQY--SCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 193 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
.+.+-|..... ...+...++......+.+..+. -... +++.+ ++.+.+|++......... ...+ .
T Consensus 126 de~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~-----~~~~-k 196 (323)
T KOG0322|consen 126 DETHKQDGGDTT---QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL-----PQSS-K 196 (323)
T ss_pred chhhhhccCccc---eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc-----cccc-c
Confidence 01111111100 0111111222222333332221 1222 33333 389999999875321100 0000 1
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
+..-...|..++.++.+.+.-..=++ +.+..+..|.++.....-.+ ..+..-....+..+.+-||++.+|+++.|
T Consensus 197 v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~----~~e~~lknpGv~gvrIRpD~KIlATAGWD 272 (323)
T KOG0322|consen 197 VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI----RKEITLKNPGVSGVRIRPDGKILATAGWD 272 (323)
T ss_pred cccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc----cceEEecCCCccceEEccCCcEEeecccC
Confidence 22223345678888888765433334 56778889998862221111 12223335678889999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
+.|+||+.++.+++..+.. |.+.|++++|+||...+|+++.|++|.+|++
T Consensus 273 ~RiRVyswrtl~pLAVLky-----------Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 273 HRIRVYSWRTLNPLAVLKY-----------HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEEEEeccCCchhhhhh-----------hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999998 8999999999999999999999999999986
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-20 Score=173.61 Aligned_cols=260 Identities=17% Similarity=0.264 Sum_probs=182.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc--------cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~--------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 105 (601)
.|..+|.+++|.|.. .|++++.||.|.+|+++. -+++.+|.+|.++|.|+++.+++..+++||.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 799999999999888 999999999999999932 24678899999999999999999999999999999999
Q ss_pred EeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEE
Q 007489 106 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 185 (601)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (601)
++....- .. .....-+....+.+|++.|+.++++ +... .|
T Consensus 372 ~~p~n~d-p~------ds~dp~vl~~~l~Ghtdavw~l~~s---------~~~~------------------------~L 411 (577)
T KOG0642|consen 372 NLPPNQD-PD------DSYDPSVLSGTLLGHTDAVWLLALS---------STKD------------------------RL 411 (577)
T ss_pred ccCCCCC-cc------cccCcchhccceeccccceeeeeec---------cccc------------------------ce
Confidence 7763221 00 0001112356788999999999997 4433 89
Q ss_pred EEecCCCeEEEEeccccCC--cCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 186 ISAGDDTKLFAYCANEFTK--FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 186 ~s~~~d~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
++++.||+++.|+...... +......
T Consensus 412 lscs~DgTvr~w~~~~~~~~~f~~~~e~---------------------------------------------------- 439 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESPCTFGEPKEH---------------------------------------------------- 439 (577)
T ss_pred eeecCCceEEeeccCCcCccccCCcccc----------------------------------------------------
Confidence 9999999999999876332 1110000
Q ss_pred cceEEEEEecCCCCeEEEEEcCCC--CEEEEEcCCccEEEEeecCCCCcceEEEeee--cCCcCccceeEEEEccCCCeE
Q 007489 264 TSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSLFELKKGKVGQGEWIINKR--QLPRKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~s~d~~~l 339 (601)
....++.+-... -.++...-+.-.++++.. ...+.-.... ..+.....+..+.++|.+.+.
T Consensus 440 ------------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev---~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 440 ------------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV---VSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred ------------CCcceEeeccchhHhhhhhcccccccchhhhh---hhheeeccccCCCcccccCccceEEecCCCCee
Confidence 001111111000 000001111111111111 1111001111 112223467888999999999
Q ss_pred EEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE
Q 007489 340 IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~ 412 (601)
+++..|+.|+++|..++++++.... |...++++++.|+|-+|++++.||.+++|.++...+.
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a-----------~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVA-----------HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred EecccCCceecccccccccchheee-----------ccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999988887 8999999999999999999999999999999876654
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=181.60 Aligned_cols=280 Identities=16% Similarity=0.220 Sum_probs=214.4
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.+|...|+|+.|...| ++++|+.|..++||..+++.++....||.+.|+.++.+.+..++++++.|..|++|.+..+..
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 3899999999999999 999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
+..+++|++.|++++|+ -..+.+.||
T Consensus 267 -----------------vsvLrghtgavtaiafs-------------------------------------P~~sss~dg 292 (1113)
T KOG0644|consen 267 -----------------VSVLRGHTGAVTAIAFS-------------------------------------PRASSSDDG 292 (1113)
T ss_pred -----------------HHHHhccccceeeeccC-------------------------------------ccccCCCCC
Confidence 88899999999999998 334688999
Q ss_pred eEEEEecc-ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 193 KLFAYCAN-EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 193 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
++++||.+ ....+.+.+ .. |
T Consensus 293 t~~~wd~r~~~~~y~prp-----~~----------~-------------------------------------------- 313 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRP-----LK----------F-------------------------------------------- 313 (1113)
T ss_pred ceEeccccccccccCCCC-----CC----------c--------------------------------------------
Confidence 99999987 111111111 00 0
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEE
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIY 349 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~ 349 (601)
.....+.++.+-.++.-+++ +.++.-..|.+.. .. .+...+.-+.++.|. .+.+++-.+-.+.
T Consensus 314 -~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-----l~---------~~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 314 -TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-----LA---------WRSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred -ccccceeeeeccccccccccccCCcccccchhhH-----hh---------hhccceEEEeccccccccceeeeeeeEee
Confidence 00133444555556666666 5666666665542 11 111111222222222 4566777788899
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE-EEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL-AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
+|++.+|.+++.+.+ |...+..+.++|-+..+ .+++.||...|||+-.+.+.......| ..+....|
T Consensus 379 vwnl~~g~l~H~l~g-----------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kF 446 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMG-----------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKF 446 (1113)
T ss_pred eeecccchhhhhhcc-----------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeecccc
Confidence 999999999999988 88999999999966555 588999999999998887765554445 46777899
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 429 PPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 429 ~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
|+ +|..++....-|.++|.....++
T Consensus 447 Sq-dgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 447 SQ-DGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CC-CCceEecCCCCCceEEeccCCCc
Confidence 99 99999999888999999875543
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.7e-20 Score=187.58 Aligned_cols=290 Identities=14% Similarity=0.169 Sum_probs=210.1
Q ss_pred EEEEeeCC--eEEEE----------cCCCcEEEeeCC--ccc----hhhhccccccceEEEEEeCCCCE----EEEEeeC
Q 007489 42 SLLSLRCG--TLVSA----------DSTGSVQFWDSR--HGT----LLQAHSFHKGDVNALAAAPSHNR----VFSTGSD 99 (601)
Q Consensus 42 ~v~~s~~g--~l~s~----------~~dg~i~vwd~~--~~~----~~~~~~~h~~~V~~l~~s~~~~~----l~s~~~d 99 (601)
.++|+|++ ++++| +.+.++-||.+. +.. ++..+. -...-+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 46788887 44443 335566666553 222 333343 2456789999997765 8889999
Q ss_pred CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccccccc
Q 007489 100 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 100 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
|.|.+|+...-.. ......+..+..|++.|+.+.|+ +...
T Consensus 90 G~I~ly~p~~~~~-----------~~~~~~la~~~~h~G~V~gLDfN---------~~q~-------------------- 129 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA-----------NASEEVLATKSKHTGPVLGLDFN---------PFQG-------------------- 129 (1049)
T ss_pred CceEEecchhhcc-----------CcchHHHhhhcccCCceeeeecc---------ccCC--------------------
Confidence 9999999876311 01122356788999999999997 4432
Q ss_pred CCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCC
Q 007489 180 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 259 (601)
Q Consensus 180 ~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 259 (601)
+.|++|+.||.|.+||+++...-....
T Consensus 130 ---nlLASGa~~geI~iWDlnn~~tP~~~~-------------------------------------------------- 156 (1049)
T KOG0307|consen 130 ---NLLASGADDGEILIWDLNKPETPFTPG-------------------------------------------------- 156 (1049)
T ss_pred ---ceeeccCCCCcEEEeccCCcCCCCCCC--------------------------------------------------
Confidence 599999999999999998733211100
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-
Q 007489 260 GHASTSLLVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS- 336 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~- 336 (601)
.......|.+++|+..-+ .|++ +.++.+.|||++. ...+..+. .......+..++|+|+.
T Consensus 157 -----------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~---~~pii~ls---~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 157 -----------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK---KKPIIKLS---DTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred -----------CCCCcccceEeccchhhhHHhhccCCCCCceeccccC---CCcccccc---cCCCccceeeeeeCCCCc
Confidence 001136688888887654 4555 5778999999996 33331111 11222457899999976
Q ss_pred CeEEEEecCC---cEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCceE
Q 007489 337 SQLIIAGHDR---RIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 337 ~~l~~~~~dg---~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~ 411 (601)
..|++++.|. .|.+||++.. .+++++.+ |...|.++.|++.+ .+|++++.|++|.+|+.++++.
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~-----------H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEG-----------HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcc-----------cccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence 4577777664 5999998643 46777777 99999999999966 8999999999999999999999
Q ss_pred EEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 412 HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 412 ~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
...++. .+..+..+.|+|.+...+++++-||.|.||.+.+..
T Consensus 289 l~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 289 LGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 888886 567999999999666689999999999999998764
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.2e-19 Score=168.85 Aligned_cols=275 Identities=13% Similarity=0.168 Sum_probs=211.2
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|..++|-|||..|+.+. +..+.+||.+.|.. +..+.+|.+.|.+++++ .||+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l-----------------lqtLKgHKDtVycVAys---------~dGk 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL-----------------LQPLKGHKDTVYCVAYA---------KDGK 66 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc-----------------ccccccccceEEEEEEc---------cCCc
Confidence 889999999999888665 46899999999986 88999999999999998 8887
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC-
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS- 238 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 238 (601)
.++||+.|..|.+|...-...+.. .+...+.++.|+|-...+++.+
T Consensus 67 ------------------------rFASG~aDK~VI~W~~klEG~LkY---------SH~D~IQCMsFNP~~h~LasCsL 113 (1081)
T KOG1538|consen 67 ------------------------RFASGSADKSVIIWTSKLEGILKY---------SHNDAIQCMSFNPITHQLASCSL 113 (1081)
T ss_pred ------------------------eeccCCCceeEEEecccccceeee---------ccCCeeeEeecCchHHHhhhcch
Confidence 999999999999998765332221 1226788999999887777765
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEee
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
...-+|......-. +......+.+++|..||++++.| .+|+|.+-+-.. ... +..
T Consensus 114 sdFglWS~~qK~V~------------------K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g----Eek--~~I 169 (1081)
T KOG1538|consen 114 SDFGLWSPEQKSVS------------------KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG----EEK--VKI 169 (1081)
T ss_pred hhccccChhhhhHH------------------hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC----Ccc--eEE
Confidence 77888876543311 12224678999999999999996 889998874432 222 111
Q ss_pred ecCCcCccceeEEEEccCC-----CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE
Q 007489 318 RQLPRKLQFAHSMIFSYDS-----SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 392 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l 392 (601)
....+..++|.+++|+|.. ..+++.....++.+|.+. |+.+..-.. ..-...|+.+.++|.|+
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~-----------L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA-----------LNFDPCCISYFTNGEYI 237 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc-----------CCCCchhheeccCCcEE
Confidence 3344567899999999964 467888888888888875 554432222 33456789999999999
Q ss_pred EEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 393 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 393 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
..|+.|+.+++|-.++-.. .++..+. ..|+.++..| ++++++.|+.||+|.-|++...
T Consensus 238 LiGGsdk~L~~fTR~GvrL-GTvg~~D-~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRDGVRL-GTVGEQD-SWIWTVQAKP-NSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEccCCCceEEEeecCeEE-eeccccc-eeEEEEEEcc-CCceEEEEEccCeeehhhhHHh
Confidence 9999999999997665443 3444433 6999999999 9999999999999999997543
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=154.99 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=196.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC-C--eEEEEcCCCcEEEeeCCccchhhhcc--
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-G--TLVSADSTGSVQFWDSRHGTLLQAHS-- 75 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-g--~l~s~~~dg~i~vwd~~~~~~~~~~~-- 75 (601)
.+|++.+.|.|++||..+|+.+..++ ++...++.+.|..+ + .+.+++.||+|++||+++.....++.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk--------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFK--------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheec--------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 37899999999999999999999999 89999999999874 4 78999999999999999877665544
Q ss_pred ccc-cceEEEEEeCCCCEEEEEe----eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 76 FHK-GDVNALAAAPSHNRVFSTG----SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 76 ~h~-~~V~~l~~s~~~~~l~s~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
.|. .+-.|++.+..++.+++|. .|-.|.+||++..+.. .......|..+|+++.|+
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------l~~~~eSH~DDVT~lrFH---- 174 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------LRQLNESHNDDVTQLRFH---- 174 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch---------------hhhhhhhccCcceeEEec----
Confidence 454 4667777777788888774 4678999999986531 022346799999999998
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|... ++|++|+.||.|.++|++...
T Consensus 175 -----P~~p-----------------------nlLlSGSvDGLvnlfD~~~d~--------------------------- 199 (376)
T KOG1188|consen 175 -----PSDP-----------------------NLLLSGSVDGLVNLFDTKKDN--------------------------- 199 (376)
T ss_pred -----CCCC-----------------------CeEEeecccceEEeeecCCCc---------------------------
Confidence 5543 599999999999999987510
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCc
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~ 310 (601)
...
T Consensus 200 -----------------------------------------------------------------------------EeD 202 (376)
T KOG1188|consen 200 -----------------------------------------------------------------------------EED 202 (376)
T ss_pred -----------------------------------------------------------------------------chh
Confidence 000
Q ss_pred ceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCceeeeeccCccccc-ccCCCCCCCeeEEEEccC
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD-REIQPSEPPITKMFTSSD 388 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~spd 388 (601)
.+ .....+...|..+.|..++ +.|.+-+..++..+|+++.+.....+..+..... .........+.......+
T Consensus 203 aL-----~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 203 AL-----LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred hH-----HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 01 1112234467777787766 4577778888899999988875544443211000 000011122222222234
Q ss_pred CCEEEEEec-CCeEEEEEcC---Cc---eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 389 GQWLAAVNC-FGDVYIFNLE---IQ---RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 389 ~~~las~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
....+.++. -+...++-+. ++ +....+...|..-|.++.|.. .+.+|.+|+.||.+.+|..+..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEecCCc
Confidence 445554443 5555555443 22 233334443446688888987 8899999999999999997543
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-18 Score=166.67 Aligned_cols=369 Identities=15% Similarity=0.162 Sum_probs=239.6
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc--c--chhhhccccccceE
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--G--TLLQAHSFHKGDVN 82 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~--~--~~~~~~~~h~~~V~ 82 (601)
+-.+.+|++.++. -.+.. ......|.-.++|.++||++ .+|+|..||.|.+|.--. + ...+.+.-|...|+
T Consensus 180 ~~~~~~~~v~~~~-~~~~~---~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 180 MCKIHIYFVPKHT-KHTSS---RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred eeeEEEEEecccc-eeecc---chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 3467888887655 11111 11223688889999999999 899999999999996432 1 22345667899999
Q ss_pred EEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccc
Q 007489 83 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 162 (601)
Q Consensus 83 ~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~ 162 (601)
+++|+++|.+|+|||..|.+.+|.+.+++. +-+..-...|..+.++ ||+.
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------qfLPRLgs~I~~i~vS---------~ds~--- 305 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------QFLPRLGSPILHIVVS---------PDSD--- 305 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCc------------------ccccccCCeeEEEEEc---------CCCC---
Confidence 999999999999999999999999999873 4455568899999998 8886
Q ss_pred cCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCC---cCCCccC-CCCCccceeeeeccccCCC--eEEEEE
Q 007489 163 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK---FSPHEIC-PAPQRVPIHLVHNTIFSHT--SLLLVQ 236 (601)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~l~~ 236 (601)
.......|..|.+....+... ..+...+ +..........+.+.++|. ...+..
T Consensus 306 ---------------------~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~ 364 (792)
T KOG1963|consen 306 ---------------------LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG 364 (792)
T ss_pred ---------------------eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence 677777789888887755332 2222211 1112333456666777773 334445
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe-------cCCCCeEEEEEcCCCCEEEEEc-----------CCcc
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS-------KASRKIICSTISNSGMLFAYSD-----------HVKP 298 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~~~~-----------~~~v 298 (601)
..+.+.+|++....... .+..... .+...+++++.+-.|.++++.. ...+
T Consensus 365 ~~g~vQ~ydl~td~~i~------------~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 365 HPGHVQFYDLYTDSTIY------------KLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred CCceEEEEeccccceee------------eEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 55899999887654321 1111110 1124577888888899998831 2346
Q ss_pred EEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCC-eEEEEecCCcEEEEEcCCCceee------eeccCccccc
Q 007489 299 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSS-QLIIAGHDRRIYVVDVSSSELLH------TFTPCREEHD 370 (601)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~-~l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~ 370 (601)
++|.... ..+-|.+.......|...+...++.+ ..+ ..++++.||.++||-+...+.+. +...-
T Consensus 433 KFW~~n~---~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i----- 504 (792)
T KOG1963|consen 433 KFWQYNP---NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI----- 504 (792)
T ss_pred EEEEEcC---CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-----
Confidence 7888875 44456666666666666555554443 333 79999999999999984332111 10000
Q ss_pred ccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-eEEEEeeccCCCceeEEEecCC-CCCEEEEEeCCCeEEEE
Q 007489 371 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-RQHWFISRLEGASVTAAGFPPQ-NNNVLIITTSSNQVYVF 448 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~-~~~~l~~~~~dg~v~vw 448 (601)
-.-|..+++.++||.||..|+. +.++.|.|||..+. ...... .....++..+.|... -....+.......+.+|
T Consensus 505 --~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W 580 (792)
T KOG1963|consen 505 --GSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELLCTE-GSRNWPIAELLFTAQTQNDGALVHATQQRLSVW 580 (792)
T ss_pred --eccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhhccc-cccccchHhHhhhcccccccceeeccCceEehH
Confidence 0016889999999999976655 56778999999884 332222 222234444444320 11233444556789999
Q ss_pred EcCCCCc
Q 007489 449 DVEAKQL 455 (601)
Q Consensus 449 d~~~~~~ 455 (601)
++.+..+
T Consensus 581 Nll~~~l 587 (792)
T KOG1963|consen 581 NLLSMSL 587 (792)
T ss_pred hhhhhhe
Confidence 9988764
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.3e-20 Score=164.05 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=173.8
Q ss_pred CEEeeecCCcEEEEECCCC-ceEEEEEec------------cCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeC
Q 007489 1 MLYSGSSDGYIRSWDAKLG-YEIYRITVG------------LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS 65 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~-~~~~~~~~~------------~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~ 65 (601)
++|.|+-|..|.|||+.-- ...-.+..+ ......+|+..|.+|+|+..- .||||+.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 5899999999999998421 111111111 011124799999999998765 7999999999999999
Q ss_pred CccchhhhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEE
Q 007489 66 RHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 144 (601)
Q Consensus 66 ~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 144 (601)
.+|++..++..|...|.++.|+| ...+|++|+.|++|.+.|.+.... ....|.. .+.|-.++
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----------s~~~wk~-------~g~VEkv~ 336 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----------SGKEWKF-------DGEVEKVA 336 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----------cCceEEe-------ccceEEEE
Confidence 99999999999999999999999 567899999999999999986332 1122332 56778888
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeec
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN 224 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (601)
|. |... ..++++..||+|+-+|++....
T Consensus 337 w~---------~~se-----------------------~~f~~~tddG~v~~~D~R~~~~-------------------- 364 (463)
T KOG0270|consen 337 WD---------PHSE-----------------------NSFFVSTDDGTVYYFDIRNPGK-------------------- 364 (463)
T ss_pred ec---------CCCc-----------------------eeEEEecCCceEEeeecCCCCC--------------------
Confidence 86 4433 4888999999999999986320
Q ss_pred cccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEE
Q 007489 225 TIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFE 302 (601)
Q Consensus 225 ~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~ 302 (601)
.+.+ ...|...|.++++++.- .++++ +.++.+++|+
T Consensus 365 -----------------------------------------~vwt-~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 365 -----------------------------------------PVWT-LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred -----------------------------------------ceeE-EEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 1111 22456789999998865 45555 7999999999
Q ss_pred eecCCCCcceEEEeeecCCcCccceeEEEEccCCC-eEEEEecCCcEEEEEcCCCcee
Q 007489 303 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSELL 359 (601)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~-~l~~~~~dg~i~vwd~~~~~~~ 359 (601)
+......... ... -..+...|+++.|+-. .+|.|+..+.++|||+.+...+
T Consensus 403 ~~~~~~~~v~----~~~--~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVK----EHS--FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccc----ccc--ccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9863221110 011 1123356777777654 5778888888999999776543
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8e-20 Score=182.81 Aligned_cols=248 Identities=15% Similarity=0.150 Sum_probs=188.7
Q ss_pred ceEEEEEEEeeCC-----eEEEEcCCCcEEEeeCCc---c---chhhhccccccceEEEEEeCCC-CEEEEEeeCCeEEE
Q 007489 37 ELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRH---G---TLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVIL 104 (601)
Q Consensus 37 ~~~V~~v~~s~~g-----~l~s~~~dg~i~vwd~~~---~---~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~v 104 (601)
....+.++|.+.| .||.|..||.|.+||... + ..+.++..|.+.|..+.|++.. +.|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 4567788888766 388889999999999865 2 3567788899999999999955 59999999999999
Q ss_pred EEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCE
Q 007489 105 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 184 (601)
Q Consensus 105 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (601)
||+..-+..... . -.....+|.+++|. .. -..+
T Consensus 144 WDlnn~~tP~~~-------------~--~~~~~~eI~~lsWN---------rk-----------------------vqhI 176 (1049)
T KOG0307|consen 144 WDLNKPETPFTP-------------G--SQAPPSEIKCLSWN---------RK-----------------------VSHI 176 (1049)
T ss_pred eccCCcCCCCCC-------------C--CCCCcccceEeccc---------hh-----------------------hhHH
Confidence 999985531110 0 12246788888885 11 1248
Q ss_pred EEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCc
Q 007489 185 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 264 (601)
Q Consensus 185 l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 264 (601)
|++++.+|+..+||++..+.+-...
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~ls------------------------------------------------------- 201 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKLS------------------------------------------------------- 201 (1049)
T ss_pred hhccCCCCCceeccccCCCcccccc-------------------------------------------------------
Confidence 9999999999999998743111110
Q ss_pred ceEEEEEecCCCCeEEEEEcCCC-CEEEE-E-cC--CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-Ce
Q 007489 265 SLLVQVKSKASRKIICSTISNSG-MLFAY-S-DH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQ 338 (601)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~-~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~ 338 (601)
.......+..++|+|+. ..|++ + +| -.|.+||++.. ...+ ..+.+|...|.++.|++.+ .+
T Consensus 202 ------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--ssP~-----k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 202 ------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--SSPL-----KILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred ------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--CCch-----hhhcccccceeeeccCCCCchh
Confidence 00111447788999987 33333 3 22 35889999862 2222 5567899999999999966 88
Q ss_pred EEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCCce
Q 007489 339 LIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 339 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~~~ 410 (601)
|++++.|+.|.+|+.++++.+..+.. ...++..+.|+|..- .+++++.||.|.||.+.+..
T Consensus 269 llSsgkD~~ii~wN~~tgEvl~~~p~-----------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTGEVLGELPA-----------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhcccCCCCeeEecCCCceEeeecCC-----------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999999999999987 788999999999765 88899999999999997665
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.9e-17 Score=157.67 Aligned_cols=418 Identities=14% Similarity=0.160 Sum_probs=257.2
Q ss_pred eeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC----eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 4 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g----~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
-++.+..|.||...||.++..+. +|...+..+.+.|.. ++++++.||.|++||...+.++.++..+ .
T Consensus 32 ~~~~~~~V~VyS~~Tg~~i~~l~--------~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~ 102 (792)
T KOG1963|consen 32 FLCTGNFVKVYSTATGECITSLE--------DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-L 102 (792)
T ss_pred EEeeCCEEEEEecchHhhhhhcc--------cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-C
Confidence 34556699999999999999888 899999999998765 5679999999999999999999888753 3
Q ss_pred ceEEEEEeC---CCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccce-------eEEEeecc
Q 007489 80 DVNALAAAP---SHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV-------RALTVAVP 148 (601)
Q Consensus 80 ~V~~l~~s~---~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~~~ 148 (601)
+|..+.+.| +-..++ .+..|.. +........ .....|........+..++ ..+..+
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~--~~~~~s~~~---------~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~-- 169 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYS--ILTTFSKKL---------SKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN-- 169 (792)
T ss_pred ceeEEEechhHhCccceeEeecccce--eeeeccccc---------ccceeeeEeeeccccchhhhhhhcCCccEEEc--
Confidence 455555533 111222 2222221 111111110 0111122222222222221 223322
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
+.| .+...-.+..+.+|....... +.........+...+.+.+++
T Consensus 170 -------~~g-------------------------e~~~i~~~~~~~~~~v~~~~~---~~~~~~~~~~Htf~~t~~~~s 214 (792)
T KOG1963|consen 170 -------NSG-------------------------EFKGIVHMCKIHIYFVPKHTK---HTSSRDITVHHTFNITCVALS 214 (792)
T ss_pred -------CCc-------------------------eEEEEEEeeeEEEEEecccce---eeccchhhhhhcccceeEEec
Confidence 222 344444556677777665331 111111112222336788899
Q ss_pred CCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeec
Q 007489 229 HTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKK 305 (601)
Q Consensus 229 ~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~ 305 (601)
|++.++++++ |.+.+|+--.... .....++..=|...|.+++|+++|.+|.+ |.++.+.+|.+.+
T Consensus 215 pn~~~~Aa~d~dGrI~vw~d~~~~~------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 215 PNERYLAAGDSDGRILVWRDFGSSD------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred cccceEEEeccCCcEEEEecccccc------------ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 9999999987 7788887443111 11334444556688999999999999999 7899999999987
Q ss_pred CCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccc--------------
Q 007489 306 GKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR-------------- 371 (601)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------- 371 (601)
. .+ ..++....+|..+.+|||+.+.+....|+.|.+....+.+...++.+.......
T Consensus 283 ~--~k-------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 283 G--KK-------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred C--Cc-------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 2 22 446666779999999999999999999999999987655444333332111000
Q ss_pred ---------------------------------------cCCCCCCCeeEEEEccCCCEEEEEe--------cCC--eEE
Q 007489 372 ---------------------------------------EIQPSEPPITKMFTSSDGQWLAAVN--------CFG--DVY 402 (601)
Q Consensus 372 ---------------------------------------~~~~~~~~i~~l~~spd~~~las~~--------~dg--~i~ 402 (601)
....+...++.++.+-.|.++++.- .|| .++
T Consensus 354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 0002223455666666777777653 222 466
Q ss_pred EEEcCCc----eEEEEeeccCCCceeEEEecCCCCC-EEEEEeCCCeEEEEEcCCCC-----cccchhcccCCcCccccc
Q 007489 403 IFNLEIQ----RQHWFISRLEGASVTAAGFPPQNNN-VLIITTSSNQVYVFDVEAKQ-----LGEWSMQHTFVLPRRYQE 472 (601)
Q Consensus 403 iwd~~~~----~~~~~~~~~~~~~v~~l~~~p~~~~-~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~ 472 (601)
+|-.... .+...+...|+..+.+.+|.+.... ..++++.||.++||-+.+.+ -..|.+..- -.-
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i------~sy 507 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI------GSY 507 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee------ecc
Confidence 7765433 3333445567655444444431333 89999999999999995332 233543321 112
Q ss_pred CCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCCC
Q 007489 473 FPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRP 507 (601)
Q Consensus 473 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~ 507 (601)
|..++..++|+.| +..+.+.-.+.+.++|...+
T Consensus 508 ~k~~i~a~~fs~d--Gslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 508 HKTPITALCFSQD--GSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCcccchhhcCC--CcEEEEecCCEEEEecCCCh
Confidence 6788999999998 45555556777777787664
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.1e-19 Score=157.81 Aligned_cols=233 Identities=15% Similarity=0.193 Sum_probs=174.4
Q ss_pred eEEEEcCCCcEEEeeCCccc----------hh-----------hhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEe
Q 007489 50 TLVSADSTGSVQFWDSRHGT----------LL-----------QAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKA 107 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~----------~~-----------~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~ 107 (601)
++|.|+.|..|.|||+.--. .. ..-.+|+..|.+|+|+.. .+.|+|||.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 89999999999999984211 00 012369999999999874 467889999999999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
.++++ ..++..|+..|.++.|+ |... ..|++
T Consensus 274 ~~g~p-----------------~~s~~~~~k~Vq~l~wh---------~~~p-----------------------~~LLs 304 (463)
T KOG0270|consen 274 DTGKP-----------------KSSITHHGKKVQTLEWH---------PYEP-----------------------SVLLS 304 (463)
T ss_pred CCCCc-----------------ceehhhcCCceeEEEec---------CCCc-----------------------eEEEe
Confidence 99996 67778899999999998 4432 49999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
|+.|++|.+.|.+...
T Consensus 305 Gs~D~~V~l~D~R~~~---------------------------------------------------------------- 320 (463)
T KOG0270|consen 305 GSYDGTVALKDCRDPS---------------------------------------------------------------- 320 (463)
T ss_pred ccccceEEeeeccCcc----------------------------------------------------------------
Confidence 9999999999987400
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCC
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDR 346 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg 346 (601)
.....|++ .+.|-.++|.|.. ..+++++.||
T Consensus 321 ----------------------------------------~s~~~wk~--------~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 321 ----------------------------------------NSGKEWKF--------DGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred ----------------------------------------ccCceEEe--------ccceEEEEecCCCceeEEEecCCc
Confidence 00001111 1244556666644 3467778899
Q ss_pred cEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCceEEEEe-eccCCCce
Q 007489 347 RIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFI-SRLEGASV 423 (601)
Q Consensus 347 ~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v 423 (601)
+|+-+|++.. +++.++.. |...|.+|++++.- .+|++++.|+.|++|++......... +.+.-+..
T Consensus 353 ~v~~~D~R~~~~~vwt~~A-----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl 421 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKA-----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRL 421 (463)
T ss_pred eEEeeecCCCCCceeEEEe-----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccce
Confidence 9999999654 88999998 99999999998864 47889999999999999765542111 11111346
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 424 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
.|+++.|...-+|+.|+..+.++|||+.+..
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccCh
Confidence 6778888556678888888899999998765
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.1e-16 Score=161.55 Aligned_cols=306 Identities=24% Similarity=0.337 Sum_probs=229.8
Q ss_pred eecCCcEEEEECCC-CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcC-CCcEEEeeCCccchhhhccccccce
Q 007489 5 GSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 5 g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~-dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
+..|+.+.+||... ......+. .|...|.+++|+|++ .+++++. |+.+++|+...+..+..+.+|...|
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLE--------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEe--------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 34489999999987 77777787 899999999999999 7888875 9999999999888888999999999
Q ss_pred EEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEec-CccccccceeEEEeeccccCCCCCCccc
Q 007489 82 NALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 82 ~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.+++|+|++. .+++++.|+.|++|+...+.. .. .+..|...+ ...|+ |++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~-----------------~~~~~~~~~~~~-~~~~~---------~~~~ 254 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL-----------------LRSTLSGHSDSV-VSSFS---------PDGS 254 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcE-----------------EeeecCCCCcce-eEeEC---------CCCC
Confidence 9999999998 555669999999998775442 33 466677664 33565 6654
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.+++++.|+.+++|+......
T Consensus 255 ------------------------~~~~~~~d~~~~~~~~~~~~~----------------------------------- 275 (466)
T COG2319 255 ------------------------LLASGSSDGTIRLWDLRSSSS----------------------------------- 275 (466)
T ss_pred ------------------------EEEEecCCCcEEEeeecCCCc-----------------------------------
Confidence 888999999999999875221
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+..+ ..|...+.++.++|++..+++ +.++.+.+|++.. ........
T Consensus 276 --------------------------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~-- 323 (466)
T COG2319 276 --------------------------LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET---GKLLSSLT-- 323 (466)
T ss_pred --------------------------EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC---CceEEEee--
Confidence 00111 233577889999998887777 5667899997764 22221111
Q ss_pred cCCcCccceeEEEEccCCCeEEEE-ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE-Ee
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA-VN 396 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las-~~ 396 (601)
...|...+..+.|.+++..++.+ ..|+.+.+|++........... ...+..+.+++ ...++. +.
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~ 389 (466)
T COG2319 324 -LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG------------HSNVLSVSFSP-DGRVVSSGS 389 (466)
T ss_pred -ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC------------CceEEEEEECC-CCCEEEEec
Confidence 23455578888884343556655 6788999999877662222222 22288999999 544444 68
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.++.+.+|+.............. ..+....+.+ ++..++.++.++.+.+|++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCceEEEecccCeeeeeccCCC-CcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 89999999999888765554432 5889999999 999999999999999999988
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=3.3e-18 Score=147.20 Aligned_cols=277 Identities=15% Similarity=0.141 Sum_probs=188.6
Q ss_pred EEEEEEeeCC-eEEEEcCCCcEEEeeCCcc-------c-hh----hhcc-ccccceEEEEEe-------CCCCEEEEEee
Q 007489 40 IWSLLSLRCG-TLVSADSTGSVQFWDSRHG-------T-LL----QAHS-FHKGDVNALAAA-------PSHNRVFSTGS 98 (601)
Q Consensus 40 V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~-------~-~~----~~~~-~h~~~V~~l~~s-------~~~~~l~s~~~ 98 (601)
...+.|+||| .|++-+.|..+.+|++... . .. .+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4567899999 8999999999999998421 1 11 1111 123567777774 56789999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc--ccccce---eEEEeeccccCCCCCCcccccccCCCCcccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR--AHTHDV---RALTVAVPISREDPLPEDKVKRSRGREKPIDFS 173 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 173 (601)
|.-|++||.-+++. ...++ .|...+ .+++|+ |||.
T Consensus 132 ~~PIh~wdaftG~l-----------------raSy~~ydh~de~taAhsL~Fs---------~DGe-------------- 171 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-----------------RASYRAYDHQDEYTAAHSLQFS---------PDGE-------------- 171 (406)
T ss_pred cCceeeeecccccc-----------------ccchhhhhhHHhhhhheeEEec---------CCCC--------------
Confidence 99999999999885 33333 233333 467777 8886
Q ss_pred ccccccCCCCEEEEecCCCeEEEEeccccCC-cCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCc
Q 007489 174 YHKWAHLGVPMLISAGDDTKLFAYCANEFTK-FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNV 252 (601)
Q Consensus 174 ~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~ 252 (601)
+|+ +|....|+++|+..... ..... .
T Consensus 172 ----------qlf-aGykrcirvFdt~RpGr~c~vy~---------------t--------------------------- 198 (406)
T KOG2919|consen 172 ----------QLF-AGYKRCIRVFDTSRPGRDCPVYT---------------T--------------------------- 198 (406)
T ss_pred ----------eEe-ecccceEEEeeccCCCCCCcchh---------------h---------------------------
Confidence 555 45677899999843111 11000 0
Q ss_pred ccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEE
Q 007489 253 ESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSM 330 (601)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 330 (601)
+..-+....+-|.|++|+|-. ..+++ +-...+-||.-.. ...+ ..+.+|.+.|+.+
T Consensus 199 --------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---~~pl-----~llggh~gGvThL 256 (406)
T KOG2919|consen 199 --------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---RRPL-----QLLGGHGGGVTHL 256 (406)
T ss_pred --------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---CCce-----eeecccCCCeeeE
Confidence 000011223668899999965 57888 4555666776653 3443 4456899999999
Q ss_pred EEccCCCeEEEEec-CCcEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 331 IFSYDSSQLIIAGH-DRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 331 ~~s~d~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
.|.++|+.|++|.. +..|..||++. ..++..+..+.. .+..-.-....|++++||+|+.||.|++||+++
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~--------~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG--------DTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc--------CccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 99999999999887 67899999954 456666666321 122222345578999999999999999999998
Q ss_pred -ceEEEEeeccCCCceeEEEecCCCCCEEEEEeC
Q 007489 409 -QRQHWFISRLEGASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 409 -~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~ 441 (601)
+.....+. .+...+..++++| --.++++++.
T Consensus 329 ~gn~~sv~~-~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 329 LGNEVSVTG-NYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred CCCcccccc-cccccccceecCc-ccceeeeccC
Confidence 55443443 3456899999999 7666766654
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=4.4e-19 Score=148.24 Aligned_cols=296 Identities=15% Similarity=0.176 Sum_probs=192.2
Q ss_pred hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc-ccccceeEEEeecc
Q 007489 70 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTVAVP 148 (601)
Q Consensus 70 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~ 148 (601)
+...+++|.+.|+++.|-.++. |++|..-|.|++|++.+... ...++ .|...|..+...
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~-----------------~~~~r~~g~~~it~lq~~-- 65 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD-----------------LPLIRLFGRLFITNLQSI-- 65 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCcc-----------------chhhhhhccceeeceeec--
Confidence 4456779999999999987765 99999999999999999774 44555 567778887765
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
|++ .+.+-+.|..+.+|++........+.+.......+ ..+..
T Consensus 66 -------p~d-------------------------~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC-----rfSl~ 108 (323)
T KOG0322|consen 66 -------PND-------------------------SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC-----RFSLV 108 (323)
T ss_pred -------CCc-------------------------chhhcCCCceEEEEEccCcceEEEeeeeccccccc-----cceec
Confidence 553 78899999999999987633222222111100000 00001
Q ss_pred CCe----EEEEEeCCeeEE---eeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc-CCCC-EEEE-E-cCCc
Q 007489 229 HTS----LLLVQYSCRLDI---LSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-NSGM-LFAY-S-DHVK 297 (601)
Q Consensus 229 ~~~----~~l~~~~~~i~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~-~l~~-~-~~~~ 297 (601)
+++ ..++.-+..... -+........ ....-.....+.+.|..+. .++. +++. | .+|.
T Consensus 109 ~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~------------i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsgh 176 (323)
T KOG0322|consen 109 KKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ------------IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGH 176 (323)
T ss_pred cCCCcchhheecCCcccchhhhhccCccceeE------------ccCchhccccCceeeeeccccccceEEEEEeccCCe
Confidence 111 111111111111 1100000000 0000011123456666532 2343 3333 4 8899
Q ss_pred cEEEEeecCCCCcceEEEee-----ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC--ce--eeeeccCccc
Q 007489 298 PSLFELKKGKVGQGEWIINK-----RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS--EL--LHTFTPCREE 368 (601)
Q Consensus 298 v~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~--~~--~~~~~~~~~~ 368 (601)
+.+||+... .++.++.. .....|..+|.++.|.+.-..=++|+.+..+..|+++.. .+ ..++.-
T Consensus 177 vv~wd~S~~---~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l---- 249 (323)
T KOG0322|consen 177 VVIWDLSTG---DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL---- 249 (323)
T ss_pred EEEEEccCC---ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe----
Confidence 999999973 22222111 234567789999999887667778888888999998532 21 112221
Q ss_pred ccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 369 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 369 ~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
.+..|..+..-||++.+|+++.|++|+||+..+.++...+. +|...|.+++|+| +..++|+++.|++|.+|
T Consensus 250 -------knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfsp-d~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 250 -------KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSP-DCELMAAASKDARISLW 320 (323)
T ss_pred -------cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCC-CCchhhhccCCceEEee
Confidence 34568889999999999999999999999999999987776 5778999999999 88999999999999999
Q ss_pred Ec
Q 007489 449 DV 450 (601)
Q Consensus 449 d~ 450 (601)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 86
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=9.9e-20 Score=175.36 Aligned_cols=287 Identities=12% Similarity=0.165 Sum_probs=209.9
Q ss_pred chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecc
Q 007489 69 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 148 (601)
Q Consensus 69 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 148 (601)
+.+..+.+|...|+|+.|...|.++++|+.|..++||..+++.+ +...++|+.+|+.++++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------lAs~rGhs~ditdlavs-- 241 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------LASCRGHSGDITDLAVS-- 241 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------hccCCCCccccchhccc--
Confidence 34566779999999999999999999999999999999999886 88999999999999986
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
.+.. ++++++.|..|++|.+.....
T Consensus 242 -------~~n~------------------------~iaaaS~D~vIrvWrl~~~~p------------------------ 266 (1113)
T KOG0644|consen 242 -------SNNT------------------------MIAAASNDKVIRVWRLPDGAP------------------------ 266 (1113)
T ss_pred -------hhhh------------------------hhhhcccCceEEEEecCCCch------------------------
Confidence 4443 889999999999999876221
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCC
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKV 308 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~ 308 (601)
..+..+|.+.|++++|+|-. +++.||++++||.+.
T Consensus 267 ---------------------------------------vsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~--- 301 (1113)
T KOG0644|consen 267 ---------------------------------------VSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL--- 301 (1113)
T ss_pred ---------------------------------------HHHHhccccceeeeccCccc---cCCCCCceEeccccc---
Confidence 12223456889999999954 558999999999883
Q ss_pred CcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC
Q 007489 309 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 388 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 388 (601)
...++ +....-.....-+.++.|..++..+++++.|+.-..|.+..... +...+.-+.++.|
T Consensus 302 ~~~~y-~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~-----------------~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 302 EPRIY-VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW-----------------RSNLLIFVTRSSD 363 (1113)
T ss_pred ccccc-CCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh-----------------hccceEEEecccc
Confidence 11111 11111111234577888888999999999999998888643211 2222222333323
Q ss_pred C-CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcC
Q 007489 389 G-QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 389 ~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
. .+.+++-.+..+.+|++.++.....+.. |...+..|.++|.+.....+++.||...|||+-.+....
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik---------- 432 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK---------- 432 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcc-cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce----------
Confidence 2 4667788888999999999976655443 557899999999777777899999999999998886422
Q ss_pred cccccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeCCC
Q 007489 468 RRYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDFGR 506 (601)
Q Consensus 468 ~~~~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~~~ 506 (601)
.-+.+ .+.+.+-.||++ +..+.+- +...++++...+
T Consensus 433 ~y~~g-h~kl~d~kFSqd--gts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 433 HYFIG-HGKLVDGKFSQD--GTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeecc-cceeeccccCCC--CceEecCCCCCceEEeccCC
Confidence 11233 467778899998 4455554 556677776655
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=9.1e-16 Score=154.76 Aligned_cols=331 Identities=24% Similarity=0.345 Sum_probs=238.0
Q ss_pred EEeeecCCcEEEEECCCCc-eEEEEEeccCCCCCCCc-eEEEEEEE-eeCC--eEEEEcC-CCcEEEeeCCc-cchhhhc
Q 007489 2 LYSGSSDGYIRSWDAKLGY-EIYRITVGLGGLGSGPE-LCIWSLLS-LRCG--TLVSADS-TGSVQFWDSRH-GTLLQAH 74 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~h~-~~V~~v~~-s~~g--~l~s~~~-dg~i~vwd~~~-~~~~~~~ 74 (601)
++.++.|+.+.+|+...+. .+..+. ++. ..+..+.+ ++++ .++..+. |+.+.+||... ......+
T Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 80 LLSGSSDGTIKLWDLDNGEKLIKSLE--------GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred EEEecCCCcEEEEEcCCCceeEEEEe--------ccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 5667789999999998777 666666 323 36777777 7777 3444344 89999999997 7778888
Q ss_pred cccccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
..|...|.+++|+|++..+++++. |+.+++|+...... ...+..|...|.++++.
T Consensus 152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~~~------- 207 (466)
T COG2319 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-----------------LSTLAGHTDPVSSLAFS------- 207 (466)
T ss_pred ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-----------------EEeeccCCCceEEEEEc-------
Confidence 999999999999999999998886 99999999987543 55666799999999997
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
|++. ..+++++.|+.+.+||.......
T Consensus 208 --~~~~-----------------------~~~~~~~~d~~i~~wd~~~~~~~---------------------------- 234 (466)
T COG2319 208 --PDGG-----------------------LLIASGSSDGTIRLWDLSTGKLL---------------------------- 234 (466)
T ss_pred --CCcc-----------------------eEEEEecCCCcEEEEECCCCcEE----------------------------
Confidence 6653 15555699999999965521100
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcce
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
......+.... ...|++++.++++ +.++.+++|++..... .+
T Consensus 235 ----------------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~ 277 (466)
T COG2319 235 ----------------------------------RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LL 277 (466)
T ss_pred ----------------------------------eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EE
Confidence 00011111222 1278899877776 7999999999986211 12
Q ss_pred EEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeec--cCcccccccCCCCCCCeeEEEEccCCC
Q 007489 313 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT--PCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
. .. ..|...+.++.|+|++..+++++.|+.+.+|+........... . |...+..+.|++++.
T Consensus 278 ~---~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 341 (466)
T COG2319 278 R---TL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-----------HEGPVSSLSFSPDGS 341 (466)
T ss_pred E---EE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc-----------cCCceEEEEECCCCC
Confidence 1 11 5567889999999988888889989889999988777665554 3 666899999943435
Q ss_pred EEEEE-ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEE-EeCCCeEEEEEcCCCCcccchhcccCCcCc
Q 007489 391 WLAAV-NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLII-TTSSNQVYVFDVEAKQLGEWSMQHTFVLPR 468 (601)
Q Consensus 391 ~las~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 468 (601)
.++.+ ..|+.+.+|++.......... ....+..+.+.+ + ..++. +..++.+.+|+........
T Consensus 342 ~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~----------- 406 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLR----------- 406 (466)
T ss_pred EEEEeecCCCcEEeeecCCCceeEEec--CCceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeee-----------
Confidence 66655 688999999998887322222 222388999998 7 55555 7889999999999876421
Q ss_pred ccccCCCcEEEEEeCCC
Q 007489 469 RYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 469 ~~~~~~~~v~~i~~~p~ 485 (601)
....+...+....++++
T Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (466)
T COG2319 407 NLDGHTSRVTSLDFSPD 423 (466)
T ss_pred eccCCCCcEEEEEECCC
Confidence 11111156777777776
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.3e-18 Score=150.14 Aligned_cols=297 Identities=13% Similarity=0.112 Sum_probs=204.7
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc------cchhhhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEE
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH------GTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILY 105 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~------~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 105 (601)
.+|.++|.++.|+.++ .|++|+.|..+++|++.. .+++.... .|.+.|.|++|....+++++|+.+++|..-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 4899999999999999 899999999999999853 23444333 467899999999999999999999999999
Q ss_pred EeccCcCCCCCCCCCccccceeEEecCcccccc---ceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCC
Q 007489 106 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH---DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 182 (601)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (601)
|+++.+. .....|.+ .|..|..+ |...
T Consensus 133 DiEt~qs------------------i~V~~~~~~~~~VY~m~~~---------P~DN----------------------- 162 (609)
T KOG4227|consen 133 DIETKQS------------------IYVANENNNRGDVYHMDQH---------PTDN----------------------- 162 (609)
T ss_pred eccccee------------------eeeecccCcccceeecccC---------CCCc-----------------------
Confidence 9998762 22334444 78888877 6654
Q ss_pred CEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCC
Q 007489 183 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 262 (601)
Q Consensus 183 ~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 262 (601)
.|++.+.++.|.+||.+.... +. .++.
T Consensus 163 -~~~~~t~~~~V~~~D~Rd~~~---~~--------------------------------~~~~----------------- 189 (609)
T KOG4227|consen 163 -TLIVVTRAKLVSFIDNRDRQN---PI--------------------------------SLVL----------------- 189 (609)
T ss_pred -eEEEEecCceEEEEeccCCCC---CC--------------------------------ceee-----------------
Confidence 999999999999999886220 00 0000
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCCcceEEEee-ecCCcCccceeEEEEccCCCeE
Q 007489 263 STSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~d~~~l 339 (601)
..........+.|+|.. .+|++ +..+.+.+||.+. ....+++... ..++.....-..+.|+|+|..|
T Consensus 190 --------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~--~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 190 --------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM--QARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred --------ecCCCccceeeeecCCCceeEEeccccCCCCceeecc--ccchHHhhhccccCcccchhhhheeeCCCCCee
Confidence 00112456677788865 55666 6778889999986 2222211110 1223222234678899999999
Q ss_pred EEEecCCcEEEEEcCCCce-eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc---------
Q 007489 340 IIAGHDRRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--------- 409 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~--------- 409 (601)
++--....-.+||+.+..+ +..+....+.. -....+.+++|--|- -+++|+.+-.|++|.+...
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY-----~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGY-----CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcc-----eeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCcccc
Confidence 8877777777889876432 33333110000 012346678886554 4899999999999998411
Q ss_pred --------------eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 410 --------------RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 410 --------------~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+...++. .|.+-+..+.|+| ...+|++.+-.+.+++|.--
T Consensus 334 G~~~~~~~~~~~i~~~~~VLr-GHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVLR-GHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CcchhhCchhheecceeEEEe-cccccccceeecC-CcceEeccchhhheeccccc
Confidence 1112233 3557789999999 88899999999999999754
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.7e-16 Score=152.27 Aligned_cols=281 Identities=11% Similarity=0.134 Sum_probs=173.9
Q ss_pred EeeecCCcEEEEECCC-Cc--eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEE-cCCCcEEEeeCC-ccch--hhhc
Q 007489 3 YSGSSDGYIRSWDAKL-GY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSR-HGTL--LQAH 74 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~-~~dg~i~vwd~~-~~~~--~~~~ 74 (601)
++...|+.|++||+.+ |+ .+.++. +.+....++++|++ .|+++ ..++.|.+|++. ++++ +...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~---------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD---------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES 76 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe---------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee
Confidence 4557789999999964 43 344443 33456678999999 66544 568899999986 3432 2222
Q ss_pred cccccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
. ..+....++|+|++++|++++. ++.|.+|+++....... ....+. +......++++
T Consensus 77 ~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-------------~~~~~~-~~~~~~~~~~~------- 134 (330)
T PRK11028 77 P-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-------------PIQIIE-GLEGCHSANID------- 134 (330)
T ss_pred c-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-------------ceeecc-CCCcccEeEeC-------
Confidence 2 2345678999999999998764 78999999974321000 011111 22334566676
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEE-EEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPML-ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+++ ++ ++...++.|.+||+.+...+.....
T Consensus 135 --p~g~------------------------~l~v~~~~~~~v~v~d~~~~g~l~~~~~---------------------- 166 (330)
T PRK11028 135 --PDNR------------------------TLWVPCLKEDRIRLFTLSDDGHLVAQEP---------------------- 166 (330)
T ss_pred --CCCC------------------------EEEEeeCCCCEEEEEEECCCCcccccCC----------------------
Confidence 8876 55 4555668999999875322211000
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~ 310 (601)
. ............++|+|+|+++++. .+++|.+|+++......
T Consensus 167 ---------------------------------~--~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 167 ---------------------------------A--EVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred ---------------------------------C--ceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 0 0000011335678999999998773 47999999998421111
Q ss_pred ceEEEee-ecCCc---CccceeEEEEccCCCeEEEEec-CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEE
Q 007489 311 GEWIINK-RQLPR---KLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT 385 (601)
Q Consensus 311 ~~~~~~~-~~~~~---~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 385 (601)
.. +.. ...+. .......+.++|++++++++.. ++.|.+|++.......++..... .......+++
T Consensus 212 ~~--~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~--------~~~~p~~~~~ 281 (330)
T PRK11028 212 EC--VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP--------TETQPRGFNI 281 (330)
T ss_pred EE--EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe--------ccccCCceEE
Confidence 11 111 11111 1122346899999999998865 68899999854332122222100 1124557899
Q ss_pred ccCCCEEEEEec-CCeEEEEEcC
Q 007489 386 SSDGQWLAAVNC-FGDVYIFNLE 407 (601)
Q Consensus 386 spd~~~las~~~-dg~i~iwd~~ 407 (601)
+|||++|+++.. +++|.+|+++
T Consensus 282 ~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 282 DHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCCEEEEEEccCCcEEEEEEc
Confidence 999999998775 8899999875
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.1e-19 Score=159.98 Aligned_cols=307 Identities=15% Similarity=0.203 Sum_probs=219.7
Q ss_pred CCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc-ccccceEEEEEeC--CCCEEEEEeeCCeEEEEEec
Q 007489 33 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAP--SHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 33 ~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~ 108 (601)
+..|.++|..|.|...| .|++|+.|..|.+||+..+.....+. +|...|....|-| +.+.+++++.||.|++=.+.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 44899999999999999 99999999999999999988877665 7999999999988 45789999999999988765
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
.... ......+..|.+.|.-+++. |+.. ..|+++
T Consensus 218 ~t~~--------------~e~t~rl~~h~g~vhklav~---------p~sp-----------------------~~f~S~ 251 (559)
T KOG1334|consen 218 ETGY--------------VENTKRLAPHEGPVHKLAVE---------PDSP-----------------------KPFLSC 251 (559)
T ss_pred cccc--------------eecceecccccCccceeeec---------CCCC-----------------------Cccccc
Confidence 4332 00134566788899999886 6654 489999
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
|.|+.+.-+|++.... ...+. +.
T Consensus 252 geD~~v~~~Dlr~~~p-------------------------a~~~~-cr------------------------------- 274 (559)
T KOG1334|consen 252 GEDAVVFHIDLRQDVP-------------------------AEKFV-CR------------------------------- 274 (559)
T ss_pred ccccceeeeeeccCCc-------------------------cceee-ee-------------------------------
Confidence 9999999999875210 00000 00
Q ss_pred EEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCC-----cCccceeEEEEccCCCeEEE
Q 007489 269 QVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLP-----RKLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~s~d~~~l~~ 341 (601)
+...+..-....++..|... .+++ +.+.-+++||.+.-.....-- +....++ ...-.|++++|+.++.-|.+
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hhhhcCCccccccCcccceeEEecCCccceee
Confidence 00000012356677777654 6777 788899999987532210000 0011122 22347999999988877777
Q ss_pred EecCCcEEEEEcCC--C----------ceeee-eccCcccccccCCCCCCCeeEEE-EccCCCEEEEEecCCeEEEEEcC
Q 007489 342 AGHDRRIYVVDVSS--S----------ELLHT-FTPCREEHDREIQPSEPPITKMF-TSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 342 ~~~dg~i~vwd~~~--~----------~~~~~-~~~~~~~~~~~~~~~~~~i~~l~-~spd~~~las~~~dg~i~iwd~~ 407 (601)
+-.|-.|+++.-.- | ..++. +++|+ ....|..+- |-|...|+++|+.-|.|.||+-.
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr---------N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHR---------NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccc---------cccccceeeeccCccceEEecCccceEEEEecc
Confidence 77888899996422 2 12222 55544 234466665 56888999999999999999999
Q ss_pred CceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 408 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 408 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
+++.+..+..-+ .-|.||.=+| --..||+++-|.-|+||...+.+
T Consensus 425 t~eii~~MegDr-~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 425 TGEIIRFMEGDR-HVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hhHHHHHhhccc-ceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 999876665544 4899999999 88899999999999999985543
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=4.3e-18 Score=146.50 Aligned_cols=218 Identities=18% Similarity=0.245 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc-
Q 007489 276 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV- 353 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~- 353 (601)
.+|+|.+|++|+..+|++ ....+.||.... ..+|+.- .++..|...|+.|.|+|..+.|++++.|..-++|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~----~~~w~~~-htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLG----ADLWEPA-HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecC----CCCceec-eehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 779999999999999995 666999999874 3445433 678889999999999999999999999999999998
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE---eeccCCCceeEEEecC
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF---ISRLEGASVTAAGFPP 430 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~l~~~p 430 (601)
..++-..++.-.+ ++...+++.|+|.++.+|+|+....|.||-++..+.-+. +.....+.|++++|+|
T Consensus 86 ~~~~WkptlvLlR---------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR---------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred CCCeeccceeEEE---------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 4444322222211 888999999999999999999999999999887665433 3333457899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEc-----C-CCCcccchhc-ccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEe
Q 007489 431 QNNNVLIITTSSNQVYVFDV-----E-AKQLGEWSMQ-HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 503 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~-----~-~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~ 503 (601)
++-+|++|+.|+..+||.. + ....++|... +...+..++....+.+.++.|+|+ .....|+..++.+++.|
T Consensus 157 -nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 157 -NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVD 234 (361)
T ss_pred -CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEee
Confidence 9999999999999999974 3 2345667444 334566666666789999999998 33344555778888888
Q ss_pred CCCCCC
Q 007489 504 FGRPVD 509 (601)
Q Consensus 504 ~~~~~~ 509 (601)
...|.+
T Consensus 235 a~~p~~ 240 (361)
T KOG1523|consen 235 AAGPSE 240 (361)
T ss_pred cCCCch
Confidence 877643
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=2.7e-16 Score=150.83 Aligned_cols=280 Identities=12% Similarity=0.150 Sum_probs=177.8
Q ss_pred EEEEcCCCcEEEeeCCc-cc--hhhhccccccceEEEEEeCCCCEEEEEe-eCCeEEEEEecc-CcCCCCCCCCCccccc
Q 007489 51 LVSADSTGSVQFWDSRH-GT--LLQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYKASC-ESIGPNDGLSSSEVIK 125 (601)
Q Consensus 51 l~s~~~dg~i~vwd~~~-~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vw~~~~-~~~~~~~~~~~~~~~~ 125 (601)
+++...++.|.+||+.+ ++ .+.++. +.+....++++|++++|++++ .++.|.+|++.. +..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l------------- 70 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL------------- 70 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------
Confidence 45557789999999964 43 444454 346678899999999988764 578899999973 221
Q ss_pred eeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC-CCeEEEEeccccCC
Q 007489 126 KWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTK 204 (601)
Q Consensus 126 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~~~~~~~~~~ 204 (601)
....... .......++++ |+++ .+++++. ++.|.+|++.+...
T Consensus 71 --~~~~~~~-~~~~p~~i~~~---------~~g~------------------------~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 71 --TFAAESP-LPGSPTHISTD---------HQGR------------------------FLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred --EEeeeec-CCCCceEEEEC---------CCCC------------------------EEEEEEcCCCeEEEEEECCCCC
Confidence 1111111 22345678887 8887 6666654 77899998863111
Q ss_pred cCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 007489 205 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS 284 (601)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 284 (601)
... .+.. ..+.....+++++
T Consensus 115 ~~~----------------------------------------------------------~~~~--~~~~~~~~~~~~~ 134 (330)
T PRK11028 115 PVA----------------------------------------------------------PIQI--IEGLEGCHSANID 134 (330)
T ss_pred CCC----------------------------------------------------------ceee--ccCCCcccEeEeC
Confidence 000 0000 0111345678899
Q ss_pred CCCCEEEE-E-cCCccEEEEeecCCCCcceEE-EeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEcCC--Cc-
Q 007489 285 NSGMLFAY-S-DHVKPSLFELKKGKVGQGEWI-INKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS--SE- 357 (601)
Q Consensus 285 ~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~--~~- 357 (601)
|+|+++++ . .++.|.+|++.. .+...-. ........ ......++|+|+|+++++++. ++.|.+|++.. ++
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~--~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSD--DGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECC--CCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 99998866 3 678999999975 1111000 00011111 234578999999999988877 89999999963 32
Q ss_pred -eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CCeEEEEEcCCce----EEEEeeccCCCceeEEEecCC
Q 007489 358 -LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQR----QHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~~~p~ 431 (601)
.+..+..... . ..+......+.++|++++|+++.. ++.|.+|+++... ....++. +..+..+.|+|
T Consensus 212 ~~~~~~~~~p~----~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~- 283 (330)
T PRK11028 212 ECVQTLDMMPA----D-FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDH- 283 (330)
T ss_pred EEEEEEecCCC----c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECC-
Confidence 2333322100 0 001223456899999999998864 7899999986432 1222222 23567899999
Q ss_pred CCCEEEEEeC-CCeEEEEEcC
Q 007489 432 NNNVLIITTS-SNQVYVFDVE 451 (601)
Q Consensus 432 ~~~~l~~~~~-dg~v~vwd~~ 451 (601)
++++|+++.. +++|.+|+++
T Consensus 284 dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEEEccCCcEEEEEEc
Confidence 9999998876 8999999885
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=153.29 Aligned_cols=233 Identities=20% Similarity=0.250 Sum_probs=155.8
Q ss_pred CCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc-ccccceEEEEEeC--CCCEEEEEeeCCeEEEEEec
Q 007489 33 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAP--SHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 33 ~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~ 108 (601)
+.||+++|.|+.|+.+| .|+||+.|-.+.|||....+++..+. +|.+.|.++.|-| +.+.+++|..|..|++||+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 34999999999999999 99999999999999999888887775 8999999999999 45688899999999999998
Q ss_pred cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
..+.... ....-.....+..|...|..++.. |++. +.+.++
T Consensus 126 ~~~~~~~-------d~~~~~~~~~~~cht~rVKria~~---------p~~P-----------------------htfwsa 166 (758)
T KOG1310|consen 126 SSKEGGM-------DHGMEETTRCWSCHTDRVKRIATA---------PNGP-----------------------HTFWSA 166 (758)
T ss_pred ccccccc-------ccCccchhhhhhhhhhhhhheecC---------CCCC-----------------------ceEEEe
Confidence 6432100 001111244566789999999987 6663 599999
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.||+++-+|+++.....+...+. +..+.+.+
T Consensus 167 sEDGtirQyDiREph~c~p~~~~~---------~~l~ny~~--------------------------------------- 198 (758)
T KOG1310|consen 167 SEDGTIRQYDIREPHVCNPDEDCP---------SILVNYNP--------------------------------------- 198 (758)
T ss_pred cCCcceeeecccCCccCCcccccc---------HHHHHhch---------------------------------------
Confidence 999999999998733221111000 00000000
Q ss_pred EEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCC-----CCcceEE------EeeecCCcCc-----------
Q 007489 269 QVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGK-----VGQGEWI------INKRQLPRKL----------- 324 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~-----~~~~~~~------~~~~~~~~~~----------- 324 (601)
.--...|+.++|.. .+|++ +++--.++||.+..- .+..... ......++|.
T Consensus 199 -----~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 199 -----QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred -----hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 01335677788865 56666 577778888843210 0000000 0001112222
Q ss_pred cceeEEEEccCCCeEEEEecCCcEEEEEcCCCc
Q 007489 325 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 357 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~ 357 (601)
..++.+.|+|+|.-|++.-....|+++|+..++
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 135778999999888776666679999986543
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.6e-17 Score=162.98 Aligned_cols=304 Identities=14% Similarity=0.193 Sum_probs=193.6
Q ss_pred EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccc---ccceEEEEEeC--CCCEEEEEeeCCeEEEEEeccCcC
Q 007489 39 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH---KGDVNALAAAP--SHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h---~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.-..+.|+|-. .+++++..-.|+|||.+.++.+..|..+ ...|+.+++-. |..++++|+.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45567788877 8899988889999999999998877643 45788999865 557889999999999997544321
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
...+....|..+.....-..... + ...|....+ .|+++|.-.
T Consensus 1146 ------~~~eLVTaw~~Ls~~~~~~r~~~-~------------------------------v~dWqQ~~G-~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1146 ------KKPELVTAWSSLSDQLPGARGTG-L------------------------------VVDWQQQSG-HLLVTGDVR 1187 (1387)
T ss_pred ------CCceeEEeeccccccCccCCCCC-e------------------------------eeehhhhCC-eEEecCCee
Confidence 00111122222111111000000 1 112322222 444444466
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|++||..... .+..+..
T Consensus 1188 ~IRIWDa~~E~--------------------------------------------------------------~~~diP~ 1205 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQ--------------------------------------------------------------VVADIPY 1205 (1387)
T ss_pred EEEEEecccce--------------------------------------------------------------eEeeccc
Confidence 77777765422 1222222
Q ss_pred cCCCCeEEEEEc-CCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccc--eeEEEEccCCCe-EEEEecCCc
Q 007489 273 KASRKIICSTIS-NSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQF--AHSMIFSYDSSQ-LIIAGHDRR 347 (601)
Q Consensus 273 ~~~~~i~~~~~s-~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~s~d~~~-l~~~~~dg~ 347 (601)
+....++++.-+ ..|+.++.| .||.+++||.+.......+ .....|... |..+.+.+.|-. |++|+.+|.
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----eeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 223445554433 346788884 9999999999873322111 222334433 899999887754 999999999
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEe--ecc---CCCc
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRL---EGAS 422 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--~~~---~~~~ 422 (601)
|++||++.......+....+ ....+..+++..+++...+|+|+. +.|+||++.+.+..... +.+ ....
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~------~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAH------WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred EEEEecccCcccccceeeec------cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCC
Confidence 99999976422222221100 002335999999999999999998 99999999876543111 111 1257
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 423 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.+++|+| -.-+||+|+.|..|.||..+..++
T Consensus 1354 ~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1354 VSCLAFHP-HRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred cceeeecc-hhHhhhhccCCceEEEeecCCcCC
Confidence 89999999 888899999999999999887653
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=3.4e-17 Score=138.81 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=151.2
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc--CCCeEEEEe
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--DSSQLIIAG 343 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--d~~~l~~~~ 343 (601)
.+..+...+-+.|.|+.|.|++..+++-.+..|.+|++..... ..-.+....-..+....++-+|+| |+..+++.
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~--~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSK--IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcc--hheeecccccccccceecccccCCCCccceEEEe-
Confidence 4445554555789999999999999998899999999986222 111111122223455677889999 77777765
Q ss_pred cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCCceE-EEEeeccCCC
Q 007489 344 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQ-HWFISRLEGA 421 (601)
Q Consensus 344 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~~~~-~~~~~~~~~~ 421 (601)
.|+++..||+++.+....+... |...|..+.|.|+.+ +||+++.||.|+|||+...+. +..++ .|..
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dA----------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsH 259 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDA----------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSH 259 (370)
T ss_pred CCCcEEEEEccchhhhcchhhh----------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCce
Confidence 4889999999988776666654 888899999999877 578999999999999876553 33444 3567
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC--------------cccc--hhc--ccCCcCcccccCCCcEEEEEeC
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ--------------LGEW--SMQ--HTFVLPRRYQEFPGEVIGLSFS 483 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~--------------~~~~--~~~--~~~~~~~~~~~~~~~v~~i~~~ 483 (601)
.|+++.|+|...++|++++.|..|.+|...+-. ...- .+. .....+.++..|.+.|.+++|+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 999999999777889999999999999864321 0000 111 1223556889999999999998
Q ss_pred CC
Q 007489 484 PS 485 (601)
Q Consensus 484 p~ 485 (601)
.-
T Consensus 340 sa 341 (370)
T KOG1007|consen 340 SA 341 (370)
T ss_pred cC
Confidence 76
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=5.3e-18 Score=146.29 Aligned_cols=338 Identities=12% Similarity=0.053 Sum_probs=221.3
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-e-EEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~-l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
||+.+. ..+.|=|.++-+..+.+. .-..|..+.|..|. . |.....++.|.+|++...+-...+....+
T Consensus 23 iAs~~~-yrlviRd~~tlq~~qlf~---------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 23 IASLSR-YRLVIRDSETLQLHQLFL---------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeeeee-eEEEEeccchhhHHHHHH---------HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 444443 367777777666554443 24567788888888 4 55667889999999988777788888889
Q ss_pred ceEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 80 DVNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
++.+++|||||+.|+ +...|-+|.+|.+.+... ..+......+..++|. |||
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------------------~~~~~pK~~~kg~~f~---------~dg 145 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------------------YLLPHPKTNVKGYAFH---------PDG 145 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEecccee------------------EEecccccCceeEEEC---------CCC
Confidence 999999999996555 777899999999998762 3334445677889998 999
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
+.-.+..+..+.+|- .+.++..=--++-+++. ......+.|+|||..++..+
T Consensus 146 ~f~ai~sRrDCkdyv----------~i~~c~~W~ll~~f~~d------------------T~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYV----------QISSCKAWILLKEFKLD------------------TIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred ceeeeeecccHHHHH----------HHHhhHHHHHHHhcCCC------------------cccccCceECCCCcEEEEec
Confidence 833333332222210 00000000000111111 13345677899998887766
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecC-----------
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKG----------- 306 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~----------- 306 (601)
..+.---+ ...-.-.+..++|+|.+++|++ +.|+.+|+.+--+-
T Consensus 198 ~~Leykv~------------------------aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s 253 (447)
T KOG4497|consen 198 NVLEYKVY------------------------AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS 253 (447)
T ss_pred chhhheee------------------------eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence 43221100 0111245788999999999999 57888876542110
Q ss_pred --CCC---------------------------cceEEE--------------eee----cCCcCccceeEEEEccCCCeE
Q 007489 307 --KVG---------------------------QGEWII--------------NKR----QLPRKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 307 --~~~---------------------------~~~~~~--------------~~~----~~~~~~~~v~~i~~s~d~~~l 339 (601)
+.. ...|.. ... ..+...-.+.-++|++|..++
T Consensus 254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~ 333 (447)
T KOG4497|consen 254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA 333 (447)
T ss_pred ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE
Confidence 000 000000 000 011122357788999999999
Q ss_pred EEEecC--CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec
Q 007489 340 IIAGHD--RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 340 ~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 417 (601)
++-... +.+.+||++..++...+. ...+|....|.|....|+.+....++++|.......+.. +
T Consensus 334 aTrnd~~PnalW~Wdlq~l~l~avLi------------Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P- 399 (447)
T KOG4497|consen 334 ATRNDKYPNALWLWDLQNLKLHAVLI------------QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-P- 399 (447)
T ss_pred eeecCCCCceEEEEechhhhhhhhhh------------hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-C-
Confidence 886653 679999998776655554 466899999999999999888888899999888655432 3
Q ss_pred cCCCceeEEEecCCCCCEEEEEeCCC
Q 007489 418 LEGASVTAAGFPPQNNNVLIITTSSN 443 (601)
Q Consensus 418 ~~~~~v~~l~~~p~~~~~l~~~~~dg 443 (601)
..|..|..+.|.. +|..++..+.|.
T Consensus 400 ~~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred CCCceeeeEEecC-CCcEEEEEcCCc
Confidence 3457899999999 999999999886
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=152.45 Aligned_cols=266 Identities=13% Similarity=0.114 Sum_probs=194.5
Q ss_pred CCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEE-eC-------CCCEEEEEeeCCeEEEEE
Q 007489 35 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA-AP-------SHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~-s~-------~~~~l~s~~~dg~i~vw~ 106 (601)
.|...|.|+.|+.+..++.+++|..+.+|.-.+......+.-....|....+ -+ ....++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 5778888999998886666666766666654433333322221222211111 11 225788888999999987
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
-.... -.....|...+.+-.|+ |||. -|+
T Consensus 92 k~~rV------------------E~sv~AH~~A~~~gRW~---------~dGt------------------------gLl 120 (737)
T KOG1524|consen 92 KSARV------------------ERSISAHAAAISSGRWS---------PDGA------------------------GLL 120 (737)
T ss_pred ccchh------------------hhhhhhhhhhhhhcccC---------CCCc------------------------eee
Confidence 66543 35678899999999998 9987 899
Q ss_pred EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 187 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 187 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
++|.||.|++|.-..+-
T Consensus 121 t~GEDG~iKiWSrsGML--------------------------------------------------------------- 137 (737)
T KOG1524|consen 121 TAGEDGVIKIWSRSGML--------------------------------------------------------------- 137 (737)
T ss_pred eecCCceEEEEeccchH---------------------------------------------------------------
Confidence 99999999999865411
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
..........|.|++|.|+.+-++.+..+.+.|=.+.. ..++ .....|.+-|.++.|++.+..+++|++|-
T Consensus 138 -RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~---n~k~-----i~WkAHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 138 -RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA---NSKI-----IRWRAHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred -HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccc---ccce-----eEEeccCcEEEEeecCccccceeecCCce
Confidence 01111224779999999999999998888888877764 2222 45678899999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
..+|||-. |..+.+-.. |..+|++++|.|+ +.++.++.+ +++ +..+..+.|..+
T Consensus 209 kfKvWD~~-G~~Lf~S~~-----------~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSifnl 262 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAA-----------EEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFNL 262 (737)
T ss_pred eEEeeccc-CcccccCCh-----------hccceeeeeeccc-cceeeeeee-eee------------ecCCCccceEEE
Confidence 99999955 777666665 8999999999999 666666543 222 334445789999
Q ss_pred EecCCCCCEEEEEeCCCeEEEEEc
Q 007489 427 GFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
+||+ ||..+++|+..|.+.+=.+
T Consensus 263 sWS~-DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 263 SWSA-DGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred EEcC-CCceeeccccCceEEEeee
Confidence 9999 9999999999998766444
No 188
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=6.6e-16 Score=147.01 Aligned_cols=317 Identities=15% Similarity=0.140 Sum_probs=191.0
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+++-..+|.|.|.|..+.+.+.++.. ....-..+.|+||| ++.+++.||.|.++|+.+++.+.+++.. ..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~--------~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~ 79 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPT--------GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GN 79 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE---------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcC--------CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CC
Confidence 45667789999999999999999983 23334457799999 7777888999999999999999998854 45
Q ss_pred eEEEEEeCCCCEEEEEe-eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc-------cccceeEEEeeccccCC
Q 007489 81 VNALAAAPSHNRVFSTG-SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-------HTHDVRALTVAVPISRE 152 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~ 152 (601)
..++++|+||++++++. .++.+.++|..+.+. +..+.. ....+.++..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-----------------v~~I~~~~~~~~~~~~Rv~aIv~s------ 136 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-----------------VKTIPTGGMPVDGPESRVAAIVAS------ 136 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--E-----------------EEEEE--EE-TTTS---EEEEEE-------
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccc-----------------eeecccccccccccCCCceeEEec------
Confidence 68899999999999765 689999999988663 222221 12234444433
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|... .++++--..+.|.+.|......
T Consensus 137 ---~~~~-----------------------~fVv~lkd~~~I~vVdy~d~~~---------------------------- 162 (369)
T PF02239_consen 137 ---PGRP-----------------------EFVVNLKDTGEIWVVDYSDPKN---------------------------- 162 (369)
T ss_dssp ---SSSS-----------------------EEEEEETTTTEEEEEETTTSSC----------------------------
T ss_pred ---CCCC-----------------------EEEEEEccCCeEEEEEeccccc----------------------------
Confidence 3332 1333333345666666543110
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~ 310 (601)
.....+ ..........|+|++++++++ ..+.+-++|... ..
T Consensus 163 --------------------------------~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~---~k 205 (369)
T PF02239_consen 163 --------------------------------LKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT---GK 205 (369)
T ss_dssp --------------------------------EEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT---TE
T ss_pred --------------------------------cceeee--cccccccccccCcccceeeecccccceeEEEeecc---ce
Confidence 011111 123556778899999987763 566788888764 33
Q ss_pred ceEEEeeecCCcCccceeEE-------EEc--cCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCee
Q 007489 311 GEWIINKRQLPRKLQFAHSM-------IFS--YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i-------~~s--~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 381 (601)
....+.... ..|..+...+ .|. ..+...++.-..+.+.+||..+.+.++++.. .... .
T Consensus 206 ~v~~i~~g~-~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-----------~G~g-l 272 (369)
T PF02239_consen 206 LVALIDTGK-KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-----------QGGG-L 272 (369)
T ss_dssp EEEEEE-SS-SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE------------SSSS--
T ss_pred EEEEeeccc-cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC-----------CCCc-c
Confidence 332222211 1122222211 122 2233332333344577888888999999986 4444 7
Q ss_pred EEEEccCCCEEEEE----ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCC--CeEEEEEcCCCCc
Q 007489 382 KMFTSSDGQWLAAV----NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS--NQVYVFDVEAKQL 455 (601)
Q Consensus 382 ~l~~spd~~~las~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d--g~v~vwd~~~~~~ 455 (601)
.+..+|++++|.+. ...+.|.|+|.++.+....+....+..+.++.|++ +|+.+.++..+ +.|.|||..+.++
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEE
Confidence 88999999999987 45689999999999876666544444699999999 99877766543 3799999999775
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=2.7e-15 Score=132.07 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=164.6
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC--CeEEEEEeccCcC
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD--GQVILYKASCESI 112 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~i~vw~~~~~~~ 112 (601)
....+..+.|..+. .|..|+.|| .+++.................|.-+-|+. .+++..+.+ +.+++.++..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 34557777788888 555666666 67787765544333333344566666764 455544433 4578887776542
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
+..+ .....|.++.+. - +.|+.+=.+.
T Consensus 81 -----------------ICe~-~fpt~IL~VrmN-----------r------------------------~RLvV~Lee~ 107 (391)
T KOG2110|consen 81 -----------------ICEI-FFPTSILAVRMN-----------R------------------------KRLVVCLEES 107 (391)
T ss_pred -----------------EEEE-ecCCceEEEEEc-----------c------------------------ceEEEEEccc
Confidence 2211 235567777764 1 1454444433
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
|++||+++++.+...... .
T Consensus 108 -IyIydI~~MklLhTI~t~------------------------------------------------------------~ 126 (391)
T KOG2110|consen 108 -IYIYDIKDMKLLHTIETT------------------------------------------------------------P 126 (391)
T ss_pred -EEEEecccceeehhhhcc------------------------------------------------------------C
Confidence 888888875544332210 0
Q ss_pred cCCCCeEEEEEcCCCCEEEE-E--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc-E
Q 007489 273 KASRKIICSTISNSGMLFAY-S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR-I 348 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~-~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~-i 348 (601)
++...+.++++++.+.++|. + +.|.|.+||... -+.. ..+..|.+.+-+++|+++|.+||++++.|+ |
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v-----~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQPV-----NTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ceee-----eEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 12244667777777789998 3 678999999975 2221 456689999999999999999999999997 7
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
|||.+.+|+.+.+|.... ....|.+++||||+++|++.+..++|+||.++
T Consensus 199 RVf~v~~G~kl~eFRRG~---------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGT---------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEEcCCccEeeeeeCCc---------eeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 999999999999998633 35678999999999999999999999999985
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.2e-16 Score=135.61 Aligned_cols=280 Identities=13% Similarity=0.129 Sum_probs=192.3
Q ss_pred CCCcEEEeeCCcc--chh-hhccccccceEEEEEeCCCC-EEEEEeeC-------CeEEEEEeccCcCCCCCCCCCcccc
Q 007489 56 STGSVQFWDSRHG--TLL-QAHSFHKGDVNALAAAPSHN-RVFSTGSD-------GQVILYKASCESIGPNDGLSSSEVI 124 (601)
Q Consensus 56 ~dg~i~vwd~~~~--~~~-~~~~~h~~~V~~l~~s~~~~-~l~s~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~ 124 (601)
.|+.|.+.++..+ .+. ..|..|.+.|+.++-+|-.+ .|+|+-.+ -.+.||.+..... .+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~--------~S~~ 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG--------QSNS 109 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC--------cccc
Confidence 4677887776543 332 56777899999999999554 45554332 2467998876432 1222
Q ss_pred ceeEEecCcc-ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC
Q 007489 125 KKWIYVGSVR-AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 203 (601)
Q Consensus 125 ~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~ 203 (601)
..|.++..+. .+-..|.++.|. |++. .+++-. |..|.+|++....
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~---------Pns~------------------------klasm~-dn~i~l~~l~ess 155 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWE---------PNSD------------------------KLASMD-DNNIVLWSLDESS 155 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEc---------CCCC------------------------eeEEec-cCceEEEEcccCc
Confidence 3344555554 455689999998 8775 666655 7889999987633
Q ss_pred CcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 007489 204 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 283 (601)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 283 (601)
..... ........+....++-+|
T Consensus 156 ~~vae---------------------------------------------------------v~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 156 KIVAE---------------------------------------------------------VLSSESAEMRHSFTSGAW 178 (370)
T ss_pred chhee---------------------------------------------------------ecccccccccceeccccc
Confidence 21000 000011112355677788
Q ss_pred cC--CCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCe-EEEEecCCcEEEEEcCCC-cee
Q 007489 284 SN--SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ-LIIAGHDRRIYVVDVSSS-ELL 359 (601)
Q Consensus 284 s~--~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~-l~~~~~dg~i~vwd~~~~-~~~ 359 (601)
|| +|..+++..++++..||+++ ..+.|.+ -..|...+..+.|+|+-++ |++|+.||.|++||.+.- .++
T Consensus 179 spHHdgnqv~tt~d~tl~~~D~RT---~~~~~sI----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 179 SPHHDGNQVATTSDSTLQFWDLRT---MKKNNSI----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred CCCCccceEEEeCCCcEEEEEccc---hhhhcch----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 88 78999999999999999997 3343322 2456778999999998764 788999999999998644 477
Q ss_pred eeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCce---------------------EEEEe--
Q 007489 360 HTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQR---------------------QHWFI-- 415 (601)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~~---------------------~~~~~-- 415 (601)
.++.+ |..+|.++.|.|. .++|.+|+.|..|.+|....-. ....+
T Consensus 252 ~el~~-----------HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 252 QELPG-----------HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred cccCC-----------CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 77777 9999999999994 5688899999999999763111 00011
Q ss_pred ---ecc--CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 416 ---SRL--EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 416 ---~~~--~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
..+ |...|.+++|+..|.=.+|+-+.||.+.|=.+..
T Consensus 321 g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111 3468999999984555566778999998877654
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=4.6e-17 Score=143.99 Aligned_cols=234 Identities=13% Similarity=0.182 Sum_probs=162.3
Q ss_pred ecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEE
Q 007489 318 RQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAV 395 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~ 395 (601)
....+|..+|..++|+| +...||+|++|.+|.||++..+-+.+.+.. ...++.+|...|-.++|+|.. +.|+++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----pvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----PVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc----ceEEEeecceeEEEEeecccchhhHhhc
Confidence 45678999999999999 667899999999999999966543333221 112233499999999999964 588999
Q ss_pred ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhccc-CCcCc-ccccC
Q 007489 396 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHT-FVLPR-RYQEF 473 (601)
Q Consensus 396 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~-~~~~~ 473 (601)
+.|..|.|||+.+++.+..+. |...|.++.|+. +|.+|++++.|..|+|||..++++..-...+. ....+ .|.++
T Consensus 151 g~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred cCCceEEEEeccCCceeeecC--CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999999999999877766 667999999999 99999999999999999999998633211111 01111 11121
Q ss_pred CCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCCCCCCCccCccccCCchhhhhhccCCccccccccccccccccccccCC
Q 007489 474 PGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGR 553 (601)
Q Consensus 474 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 553 (601)
+.+..--|+.- ++..+.+|+.. +++.|+...+ -....+
T Consensus 228 -g~i~tTGfsr~-seRq~aLwdp~-----nl~eP~~~~e-----------------------------------lDtSnG 265 (472)
T KOG0303|consen 228 -GKIFTTGFSRM-SERQIALWDPN-----NLEEPIALQE-----------------------------------LDTSNG 265 (472)
T ss_pred -Cceeeeccccc-cccceeccCcc-----cccCcceeEE-----------------------------------eccCCc
Confidence 12334444443 34455555543 3333322111 111234
Q ss_pred cceEEEeeccceEEeeecCCCeEEEEe----cCHHHHHhcCCCCcccccCC
Q 007489 554 KNFEFFAFRDPVLFIGHLSKSSMLIID----KPWLEVVKTFDAPVHRHIYG 600 (601)
Q Consensus 554 ~~~~~~~~~~~~l~~~~~~~~~lv~~e----~p~~~~~~~lp~~~~~~~~g 600 (601)
.-|.|.+....++|+..-+++.|--+| .|+...+.++...=.|+.+|
T Consensus 266 vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g 316 (472)
T KOG0303|consen 266 VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMG 316 (472)
T ss_pred eEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccc
Confidence 567888888999999999999998776 46666777766555555444
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.2e-15 Score=134.31 Aligned_cols=158 Identities=15% Similarity=0.221 Sum_probs=125.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeee-cCCcCccceeEEEEccCCCeEEEEec--CCcEEEEE
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR-QLPRKLQFAHSMIFSYDSSQLIIAGH--DRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~s~d~~~l~~~~~--dg~i~vwd 352 (601)
..|.++.++. +.|++.-...|+|||++. ...+ ... ..+.+...+.++.+++++.+||.-+. .|.|.+||
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~IyIydI~~---MklL---hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEESIYIYDIKD---MKLL---HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEcc--ceEEEEEcccEEEEeccc---ceee---hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 5577777654 455555455599999986 2222 222 22344556777777777789887543 58999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe-EEEEEcCCceEEEEeeccCC-CceeEEEecC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD-VYIFNLEIQRQHWFISRLEG-ASVTAAGFPP 430 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~-i~iwd~~~~~~~~~~~~~~~-~~v~~l~~~p 430 (601)
+.+.+.+.++.. |.+.+.+++|+++|.+||+++..|+ ||||.+.+++....+.+.-. ..|.+++|+|
T Consensus 160 ~~nl~~v~~I~a-----------H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 160 TINLQPVNTINA-----------HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred cccceeeeEEEe-----------cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 999999999998 9999999999999999999999998 69999999998877765322 5789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Q 007489 431 QNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
++++|++.+..++|+||.++..
T Consensus 229 -ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 229 -DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -CCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999754
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=3.3e-16 Score=152.88 Aligned_cols=281 Identities=16% Similarity=0.163 Sum_probs=187.4
Q ss_pred CcEEEEECCCC-ceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccch--hhhc----ccccc
Q 007489 9 GYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL--LQAH----SFHKG 79 (601)
Q Consensus 9 g~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~--~~~~----~~h~~ 79 (601)
+.+.||++... ..-..+. -...|.|+.|+|.. .++.|..+|.|.+||+..+.. ...+ ..|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~---------~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~ 292 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE---------SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE 292 (555)
T ss_pred ceEEEEecCCCCCceEEEe---------cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence 47999999765 3333343 56789999999987 788899999999999987665 3222 35899
Q ss_pred ceEEEEEeCCC--CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 80 DVNALAAAPSH--NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 80 ~V~~l~~s~~~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
+|+.+.|..+. .-+++++.||.|+.|+++.-.......+...... ...-..-...+.+++|. +.
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~-----~~~~~~~~~~~t~~~F~---------~~ 358 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH-----KGQQSSKAVGATSLKFE---------PT 358 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc-----cccccccccceeeEeec---------cC
Confidence 99999997754 4499999999999998776443111100000000 00111123456677775 33
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
.. ..++.|+.+|.|..-+-.....-..
T Consensus 359 ~p-----------------------~~FiVGTe~G~v~~~~r~g~~~~~~------------------------------ 385 (555)
T KOG1587|consen 359 DP-----------------------NHFIVGTEEGKVYKGCRKGYTPAPE------------------------------ 385 (555)
T ss_pred CC-----------------------ceEEEEcCCcEEEEEeccCCccccc------------------------------
Confidence 22 4899999999887643332110000
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
.++ ........|.+.|.++.++|=+. .+.++.|-+++||.... ....+
T Consensus 386 ----~~~---------------------~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl---- 434 (555)
T KOG1587|consen 386 ----VSY---------------------KGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPL---- 434 (555)
T ss_pred ----ccc---------------------cccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcc----
Confidence 000 01112223468899999999774 44556799999998873 12222
Q ss_pred eecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCC--ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 317 KRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
..+..+...+++++|||-. ..++++..+|.|.+||+... .++.+... +....+.+.|+++|+.|+
T Consensus 435 -~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-----------~~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 435 -LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-----------CSPALTRVRWSPNGKLLA 502 (555)
T ss_pred -hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc-----------cccccceeecCCCCcEEE
Confidence 2233445569999999955 56788888999999999543 34444433 456678889999999999
Q ss_pred EEecCCeEEEEEcCC
Q 007489 394 AVNCFGDVYIFNLEI 408 (601)
Q Consensus 394 s~~~dg~i~iwd~~~ 408 (601)
+|+..|++++|++..
T Consensus 503 vGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 503 VGDANGTTHILKLSE 517 (555)
T ss_pred EecCCCcEEEEEcCc
Confidence 999999999999864
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.9e-16 Score=139.88 Aligned_cols=320 Identities=9% Similarity=0.053 Sum_probs=209.1
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc-cccccceeEEEeecccc
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRALTVAVPIS 150 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~ 150 (601)
+.+.+|.+.|++|.|+.++++|++||.|..+++|.+...-....+ .+++.. ..|...|.+++|.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-----------KPI~~~~~~H~SNIF~L~F~---- 114 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-----------KPIGVMEHPHRSNIFSLEFD---- 114 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-----------CCceeccCccccceEEEEEc----
Confidence 456789999999999999999999999999999998754321100 001211 2355789999996
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
.... .+++|+.+++|...|+++.+.+.
T Consensus 115 -----~~N~------------------------~~~SG~~~~~VI~HDiEt~qsi~------------------------ 141 (609)
T KOG4227|consen 115 -----LENR------------------------FLYSGERWGTVIKHDIETKQSIY------------------------ 141 (609)
T ss_pred -----cCCe------------------------eEecCCCcceeEeeecccceeee------------------------
Confidence 4443 99999999999999998733211
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
+..-. ...+.|..+..+|-.+.+++ +.++.|.+||.+...+.
T Consensus 142 ------------V~~~~-------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 142 ------------VANEN-------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred ------------eeccc-------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 11100 11256778888887777777 78999999999864322
Q ss_pred cceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
..+ ..+.........+.|+|.. .+|++.+..+-+-+||....+ .+....+... +......-..+.|+|
T Consensus 185 ~~~-----~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~-----L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 185 ISL-----VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG-----LPQENTEWMGSLWSP 254 (609)
T ss_pred Cce-----eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc-----CcccchhhhheeeCC
Confidence 222 1222334467888999955 567888888899999986432 2221111100 000122336789999
Q ss_pred CCCEEEEEecCCeEEEEEcCCceEEEEeeccCC-------CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC----Ccc
Q 007489 388 DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG-------ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK----QLG 456 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~----~~~ 456 (601)
+|..|.+--....-.+||+.+.++. +++.-|. ..+.+++|.- | ..+++|+.+-.|++|.+... ..+
T Consensus 255 ~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 255 SGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred CCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCcc
Confidence 9998888776666778888876654 2332221 3577889985 4 45999999999999998643 222
Q ss_pred cchhc--------ccCCcCcccccCCCcEEEEEeCCC-------CCCCEEEEEcCceEEEEeCCCCCCC
Q 007489 457 EWSMQ--------HTFVLPRRYQEFPGEVIGLSFSPS-------PSSSSVIIYSARAMCVIDFGRPVDP 510 (601)
Q Consensus 457 ~~~~~--------~~~~~~~~~~~~~~~v~~i~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (601)
+..+. -.......+++|..-+..+.|+|. |-.+.+.+|++..+- .+++.|+..
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P-~~~D~~~E~ 399 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLP-WSYDLPFER 399 (609)
T ss_pred ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCC-cccCCcccc
Confidence 22210 011233468899999999999997 335566777654332 445555443
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.8e-17 Score=146.32 Aligned_cols=205 Identities=14% Similarity=0.161 Sum_probs=144.0
Q ss_pred EEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCC
Q 007489 41 WSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS 119 (601)
Q Consensus 41 ~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 119 (601)
-+++|+.+| .|++|+.||.+|||++.+...+.....|.+.|.+|.|+|||++|++-+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~------- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA------- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-------
Confidence 678999998 99999999999999988888888888899999999999999999999999 999999998753
Q ss_pred CccccceeEEecCcccc--ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEE
Q 007489 120 SSEVIKKWIYVGSVRAH--THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 197 (601)
Q Consensus 120 ~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~ 197 (601)
+...... ......+.|. .|+. . ..+++.
T Consensus 220 ----------~a~~t~~~k~~~~~~cRF~---------~d~~------------------------------~-~~l~la 249 (398)
T KOG0771|consen 220 ----------LARKTPFSKDEMFSSCRFS---------VDNA------------------------------Q-ETLRLA 249 (398)
T ss_pred ----------hhhcCCcccchhhhhceec---------ccCC------------------------------C-ceEEEE
Confidence 1111100 0000111111 0000 0 011111
Q ss_pred eccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 198 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
...
T Consensus 250 a~~----------------------------------------------------------------------------- 252 (398)
T KOG0771|consen 250 ASQ----------------------------------------------------------------------------- 252 (398)
T ss_pred Eec-----------------------------------------------------------------------------
Confidence 000
Q ss_pred eEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc
Q 007489 278 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 357 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~ 357 (601)
...+.++.|++...+.. .. +...........|++++.++||+++|.|+.||.|.|++..+.+
T Consensus 253 ---------------~~~~~v~~~~~~~w~~~-~~--l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq 314 (398)
T KOG0771|consen 253 ---------------FPGGGVRLCDISLWSGS-NF--LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ 314 (398)
T ss_pred ---------------CCCCceeEEEeeeeccc-cc--cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee
Confidence 12233344444331111 11 0112222334589999999999999999999999999998888
Q ss_pred eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 358 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
.++-.+.. |...|+.+.|+||.+++++.+.+.++.|..+..
T Consensus 315 ~~~~vk~a----------H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 315 RLQYVKEA----------HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEeehhh----------heeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 87766654 899999999999999999999999999888765
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.6e-16 Score=127.83 Aligned_cols=263 Identities=17% Similarity=0.229 Sum_probs=185.8
Q ss_pred cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 79 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
..|.+-+++|.+++|++|..+|.|.++.+..-..... ....+- .+...++|..++..++|. |
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------~~~gk~-~iv~eqahdgpiy~~~f~----------d- 72 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------EPPGKL-KIVPEQAHDGPIYYLAFH----------D- 72 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------CCCCCc-ceeeccccCCCeeeeeee----------h-
Confidence 4567778999999999999999999999876432111 001111 133458899999999985 2
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
.+|++|+. |.|+-|..++.....
T Consensus 73 ------------------------~~Lls~gd-G~V~gw~W~E~~es~-------------------------------- 95 (325)
T KOG0649|consen 73 ------------------------DFLLSGGD-GLVYGWEWNEEEESL-------------------------------- 95 (325)
T ss_pred ------------------------hheeeccC-ceEEEeeehhhhhhc--------------------------------
Confidence 27777776 999999877643211
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEee
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
+.-++|.+..+... ..-.-..|+++.+.|..+-+.. +.|+.++.||+.. +.. +
T Consensus 96 ~~K~lwe~~~P~~~------------------~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~---G~i-----~ 149 (325)
T KOG0649|consen 96 ATKRLWEVKIPMQV------------------DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED---GRI-----Q 149 (325)
T ss_pred cchhhhhhcCcccc------------------CcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---CEE-----E
Confidence 11223433322111 0111256888888887655554 8999999999986 433 2
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCC-CCCCeeEEEEccCCCEEEEEe
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP-SEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~spd~~~las~~ 396 (601)
..+.+|..-+.+++--.....+++|++||++++||+++++.+..+..-... ..+.+ ...+|.+++. +..+|++|+
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~--~~lRp~~g~wigala~--~edWlvCGg 225 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP--NLLRPDWGKWIGALAV--NEDWLVCGG 225 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh--hhcCcccCceeEEEec--cCceEEecC
Confidence 678899999999998665667899999999999999999998887653211 11111 3456777877 556998876
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.- .+.+|++...++.+.++-. .++..+.|.. +.+++++..+.|.-|.+..
T Consensus 226 Gp-~lslwhLrsse~t~vfpip--a~v~~v~F~~---d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 226 GP-KLSLWHLRSSESTCVFPIP--ARVHLVDFVD---DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CC-ceeEEeccCCCceEEEecc--cceeEeeeec---ceEEEeccccceeeeeecc
Confidence 54 5999999999998887743 4899999964 5788888888899998765
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.3e-16 Score=139.62 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=122.6
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC---Ce--EEEEecCCc
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS---SQ--LIIAGHDRR 347 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~---~~--l~~~~~dg~ 347 (601)
|...|.++.|||||++|++ +.+ ..++|+.+. +..+ ....-.........+.|+.|+ .+ ++.....+.
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~---g~~~---a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~ 257 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT---GAAL---ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG 257 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEecc---Cchh---hhcCCcccchhhhhceecccCCCceEEEEEecCCCCc
Confidence 4577999999999999999 777 999999987 4332 112212333456677888777 33 333334466
Q ss_pred EEEEEcCCCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCcee
Q 007489 348 IYVVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT 424 (601)
Q Consensus 348 i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 424 (601)
|+.|++....- ++..+.. .-...|++++.|+||+++|.|+.||.|.|++..+.+....++..|...|+
T Consensus 258 v~~~~~~~w~~~~~l~~~~~~---------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 258 VRLCDISLWSGSNFLRLRKKI---------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVT 328 (398)
T ss_pred eeEEEeeeeccccccchhhhh---------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeee
Confidence 77777643221 1111110 03457999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 425 AAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
.+.|+| +.+++++.+.|.+..|..+.-.
T Consensus 329 ~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 329 GLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999 9999999999999999988763
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.2e-17 Score=151.81 Aligned_cols=241 Identities=15% Similarity=0.168 Sum_probs=162.2
Q ss_pred EEeeecCCcEEEEECCC--------CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc----
Q 007489 2 LYSGSSDGYIRSWDAKL--------GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---- 68 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~---- 68 (601)
|++++.||+|.+|+++. -+.+.++. +|.++|.|+++.+++ .+.+|+.||+|+.|++...
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr--------aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ 380 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFR--------AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD 380 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEe--------cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc
Confidence 79999999999999932 24577777 999999999999999 9999999999999965321
Q ss_pred ------chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc--ccce
Q 007489 69 ------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH--THDV 140 (601)
Q Consensus 69 ------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v 140 (601)
.+...+.||+..|+.+++|+....|++++.||+++.|+...... ..+... ...-
T Consensus 381 ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~------------------~~f~~~~e~g~P 442 (577)
T KOG0642|consen 381 DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP------------------CTFGEPKEHGYP 442 (577)
T ss_pred cccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc------------------cccCCccccCCc
Confidence 23456789999999999999999999999999999999876552 111111 1111
Q ss_pred eEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcccee
Q 007489 141 RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 220 (601)
Q Consensus 141 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (601)
.++.+. +.+ + .+.++ +..+..+++..+.......
T Consensus 443 lsvd~~----------ss~-------------------~---a~~~~---s~~~~~~~~~~~ev~s~~~----------- 476 (577)
T KOG0642|consen 443 LSVDRT----------SSR-------------------P---AHSLA---SFRFGYTSIDDMEVVSDLL----------- 476 (577)
T ss_pred ceEeec----------cch-------------------h---Hhhhh---hcccccccchhhhhhhhee-----------
Confidence 223321 000 0 01111 1222222222211111000
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccE
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPS 299 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~ 299 (601)
+..-.... + ......+.-+..+|.+.+..+ ..++.|+
T Consensus 477 ----------------------~~~s~~~~---------~-----------~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 477 ----------------------IFESSASP---------G-----------PRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred ----------------------eccccCCC---------c-----------ccccCccceEEecCCCCeeEecccCCcee
Confidence 00000000 0 000144566677787777777 5899999
Q ss_pred EEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 300 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
+++... +..+ .....|...++++++.|+|-+|++++.|+.+++|.+....++.....
T Consensus 515 ~~dn~~---~~~l-----~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 515 FFDNKT---GKIL-----HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cccccc---cccc-----hheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 999886 4444 45567788999999999999999999999999999987777666555
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=144.79 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=117.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC---eEEEEcCCCcEEEeeCCc----------
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRH---------- 67 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~l~s~~~dg~i~vwd~~~---------- 67 (601)
+||+||+|-.+.|||....+.++.+.+ ||...|.|+.|.|.. .+++|..|..|+++|+..
T Consensus 64 lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred EEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 589999999999999999999999986 899999999999854 789999999999999974
Q ss_pred cchhhhccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEee
Q 007489 68 GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 146 (601)
Q Consensus 68 ~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 146 (601)
.+....+..|...|..|+..|++ +.+.+++.||+|+.+|++....-... .. --..+..+...--...++.++
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~------~~-~~~~l~ny~~~lielk~ltis 209 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD------ED-CPSILVNYNPQLIELKCLTIS 209 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc------cc-ccHHHHHhchhhheeeeeeec
Confidence 23456677899999999999998 78889999999999999874321100 00 000000111111234566665
Q ss_pred ccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc
Q 007489 147 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 201 (601)
Q Consensus 147 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~ 201 (601)
|... .+|+.|+.|...++||.+.
T Consensus 210 ---------p~rp-----------------------~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 210 ---------PSRP-----------------------YYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred ---------CCCC-----------------------ceEEecCCCchhhhhhhhh
Confidence 4433 5999999999999999653
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=5e-16 Score=151.64 Aligned_cols=288 Identities=12% Similarity=0.080 Sum_probs=188.9
Q ss_pred CcEEEeeCCcc-chhhhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc
Q 007489 58 GSVQFWDSRHG-TLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 135 (601)
Q Consensus 58 g~i~vwd~~~~-~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (601)
+.+.||++... .+-..+. -...|.|++|+| +..+++.|..+|.|.+||++.+.... .+........
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------~s~ls~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------PSGLSALEVS 289 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------Cccccccccc
Confidence 47999999865 3333333 467999999999 66788888999999999999876311 1111233456
Q ss_pred cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCC
Q 007489 136 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 215 (601)
Q Consensus 136 h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 215 (601)
|..++.++.|. .+.. +.-+++++.||.|..|+++..............
T Consensus 290 h~~~v~~vvW~---------~~~~----------------------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~- 337 (555)
T KOG1587|consen 290 HSEPVTAVVWL---------QNEH----------------------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK- 337 (555)
T ss_pred CCcCeEEEEEe---------ccCC----------------------CCceEEEecCCcEeeeeccccccchhhcccccc-
Confidence 77788888886 2221 126899999999999987753321110000000
Q ss_pred ccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEEE
Q 007489 216 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYS 293 (601)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~ 293 (601)
.-..........+++++|.+.. .+++..
T Consensus 338 --------------------------------------------------~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 338 --------------------------------------------------KHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred --------------------------------------------------cccccccccccceeeEeeccCCCceEEEEc
Confidence 0000011112557778887643 344446
Q ss_pred cCCccEEEEeecCCCCc-ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC-CCceeeeeccCcccccc
Q 007489 294 DHVKPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDR 371 (601)
Q Consensus 294 ~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~ 371 (601)
.+|.|.--......... .+++.. .....|.++|+++.++|=+..++..+.|.+|+||... ...++..+..
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~-~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~------- 439 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGH-STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS------- 439 (555)
T ss_pred CCcEEEEEeccCCccccccccccc-ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-------
Confidence 77776652222111111 111111 2456678899999999977666555559999999977 5567766666
Q ss_pred cCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCCceE--EEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 372 EIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQ--HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 372 ~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
+...+++++|||-.. .+|+++.||.|.|||+..... ....+ .+....+.+.|++ .++.|++|...|++++|
T Consensus 440 ----~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 440 ----SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSP-NGKLLAVGDANGTTHIL 513 (555)
T ss_pred ----ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCC-CCcEEEEecCCCcEEEE
Confidence 677799999999764 678888999999999864432 22222 2234567788888 89999999999999999
Q ss_pred EcCCC
Q 007489 449 DVEAK 453 (601)
Q Consensus 449 d~~~~ 453 (601)
++...
T Consensus 514 ~l~~~ 518 (555)
T KOG1587|consen 514 KLSES 518 (555)
T ss_pred EcCch
Confidence 99653
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.8e-16 Score=153.16 Aligned_cols=288 Identities=16% Similarity=0.148 Sum_probs=191.2
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC---eEEEEcCCCcEEEeeCC-c----cchhhh
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSR-H----GTLLQA 73 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~l~s~~~dg~i~vwd~~-~----~~~~~~ 73 (601)
|+++...-.|+|||.+.++.+..+..+. .....|+.+.+..+. .+++|+.||.|+||+-- + .+++..
T Consensus 1079 i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred eEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe
Confidence 6777767799999999999998887432 346789999987543 79999999999999642 2 233322
Q ss_pred ccc---c----ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc-ccccceeEEEe
Q 007489 74 HSF---H----KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTV 145 (601)
Q Consensus 74 ~~~---h----~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~ 145 (601)
+.+ + .+.=.-+.|.....+|+++|.-..|+|||...... ...+. +....|+++.-
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~-----------------~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV-----------------VADIPYGSSTLVTALSA 1216 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee-----------------EeecccCCCccceeecc
Confidence 221 1 11114467877777787777788999999988664 22222 22334555542
Q ss_pred eccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecc
Q 007489 146 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 225 (601)
Q Consensus 146 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (601)
. -. .++++++|..||.|++||.+....
T Consensus 1217 ~-----------~~---------------------~gn~i~AGfaDGsvRvyD~R~a~~--------------------- 1243 (1387)
T KOG1517|consen 1217 D-----------LV---------------------HGNIIAAGFADGSVRVYDRRMAPP--------------------- 1243 (1387)
T ss_pred c-----------cc---------------------CCceEEEeecCCceEEeecccCCc---------------------
Confidence 2 10 135999999999999999875110
Q ss_pred ccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEEEcCCccEEEEe
Q 007489 226 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSLFEL 303 (601)
Q Consensus 226 ~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~v~l~~~ 303 (601)
+ ..+.+|+-... ...|..+.+.+.| .++..+.+|.|++||+
T Consensus 1244 ----d--------s~v~~~R~h~~-------------------------~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1244 ----D--------SLVCVYREHND-------------------------VEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred ----c--------ccceeecccCC-------------------------cccceeEEeecCCCcceeeeccCCeEEEEec
Confidence 0 11222221111 1237777787765 3444489999999999
Q ss_pred ecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEE
Q 007489 304 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
+.. ......++... -...+..+++..+++...+|+|+. +.|+||++. |+.+..+.... .-+......+.|+
T Consensus 1287 R~~-~~e~~~~iv~~--~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~----~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1287 RMS-SKETFLTIVAH--WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNP----GFMGQRIGSVSCL 1357 (1387)
T ss_pred ccC-cccccceeeec--cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCc----ccccCcCCCccee
Confidence 973 12222111110 011124899999999999999998 999999986 66666655421 1112245667999
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCce
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~~~~~ 410 (601)
+|+|..-+||+|+.|.+|.||......
T Consensus 1358 ~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999999876543
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=9.3e-15 Score=126.17 Aligned_cols=178 Identities=12% Similarity=0.151 Sum_probs=129.1
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|.+||-....... .-.....+.++.++++.. ++.-.+.+.||...... +++..+..
T Consensus 76 kviIWDD~k~~~i~--------el~f~~~I~~V~l~r~ri-Vvvl~~~I~VytF~~n~--------------k~l~~~et 132 (346)
T KOG2111|consen 76 KVIIWDDLKERCII--------ELSFNSEIKAVKLRRDRI-VVVLENKIYVYTFPDNP--------------KLLHVIET 132 (346)
T ss_pred eEEEEecccCcEEE--------EEEeccceeeEEEcCCeE-EEEecCeEEEEEcCCCh--------------hheeeeec
Confidence 89999933211111 111224566666766544 44555889999887432 34444444
Q ss_pred cC-CCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc-E
Q 007489 273 KA-SRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR-I 348 (601)
Q Consensus 273 ~~-~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~-i 348 (601)
.. .....+++-+.+..+||. | .-|.|+|-++.....+ ....+..|...|.+++.+-+|.++|+++..|+ |
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 33 344555555555567777 5 6699999999863222 12456789999999999999999999999998 8
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
||||..+|+.+.++.... ....|.+|+||||+.+||++|.-|+|+||.+..
T Consensus 207 RIFdt~~g~~l~E~RRG~---------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 207 RIFDTEDGTLLQELRRGV---------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCcEeeeeecCC---------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999987643 467799999999999999999999999999864
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=1.5e-15 Score=131.00 Aligned_cols=249 Identities=14% Similarity=0.165 Sum_probs=183.3
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
-..+|+|.+|++|++.++.+.....|.||....... |.....+..|...|+.+.|+ |
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------w~~~htls~Hd~~vtgvdWa---------p 65 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------WEPAHTLSEHDKIVTGVDWA---------P 65 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------ceeceehhhhCcceeEEeec---------C
Confidence 457999999999999999999999999999888654 88889999999999999998 6
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
... .|++++.|..-++|.........+.
T Consensus 66 ~sn------------------------rIvtcs~drnayVw~~~~~~~Wkpt---------------------------- 93 (361)
T KOG1523|consen 66 KSN------------------------RIVTCSHDRNAYVWTQPSGGTWKPT---------------------------- 93 (361)
T ss_pred CCC------------------------ceeEccCCCCccccccCCCCeeccc----------------------------
Confidence 665 9999999999999987432211110
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
+ .+.++ ....+++.|+|.++.+|+ +....|.++-+.. .+. |=+
T Consensus 94 ----l------------------------vLlRi----NrAAt~V~WsP~enkFAVgSgar~isVcy~E~---ENd-WWV 137 (361)
T KOG1523|consen 94 ----L------------------------VLLRI----NRAATCVKWSPKENKFAVGSGARLISVCYYEQ---END-WWV 137 (361)
T ss_pred ----e------------------------eEEEe----ccceeeEeecCcCceEEeccCccEEEEEEEec---ccc-eeh
Confidence 0 12222 377899999999999999 5667788888874 333 445
Q ss_pred eeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCc-------cccc----ccCCCCCCCeeEEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR-------EEHD----REIQPSEPPITKMF 384 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~i~~l~ 384 (601)
.+..-..+...|+++.|+|++-+|++|+.|+..+||..- ++...... +.+. .+.....+.+..+.
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 545455567789999999999999999999999999742 11111000 0000 01113678899999
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCceE-EEEeeccCCCceeEEEecCCCCCEEEEEeCCC
Q 007489 385 TSSDGQWLAAVNCFGDVYIFNLEIQRQ-HWFISRLEGASVTAAGFPPQNNNVLIITTSSN 443 (601)
Q Consensus 385 ~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg 443 (601)
|+|+|..|+-.+.|..+.+-|...... ...+...+ -+..++.|-. + ..++.++.|.
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~is-e-~~vv~ag~~c 270 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWIS-E-NSVVAAGYDC 270 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeec-C-CceeecCCCC
Confidence 999999999999999999999877652 22333223 5778888875 3 4566666664
No 204
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.7e-14 Score=127.64 Aligned_cols=292 Identities=12% Similarity=0.194 Sum_probs=200.5
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE----cCCccEEEEeecCCCCcceE
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS----DHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~~~v~l~~~~~~~~~~~~~ 313 (601)
+..|.+|+++...+.. -.........+++-++++|+++.|.+. ..+.|..|.++..++.-.+
T Consensus 15 s~gI~v~~ld~~~g~l-------------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~- 80 (346)
T COG2706 15 SQGIYVFNLDTKTGEL-------------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF- 80 (346)
T ss_pred CCceEEEEEeCccccc-------------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-
Confidence 4678899988665442 111122335778899999999887772 3688889988862222222
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEcCC-Ccee---eeeccCcc-cccccCCCCCCCeeEEEEcc
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SELL---HTFTPCRE-EHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~-~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~sp 387 (601)
+......++.. +.++++++|++++++.. .|.|.++.++. |.+. ..+..... ..+++ ....+....+.|
T Consensus 81 -ln~~~~~g~~p--~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ---~~~h~H~a~~tP 154 (346)
T COG2706 81 -LNRQTLPGSPP--CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ---ESPHVHSANFTP 154 (346)
T ss_pred -eeccccCCCCC--eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc---cCCccceeeeCC
Confidence 34344444333 89999999999999887 48899999854 4332 22221000 00011 122278889999
Q ss_pred CCCEEEEEec-CCeEEEEEcCCceEEEEe--eccCCCceeEEEecCCCCCEEEEEeC-CCeEEEEEcCC--CCcccchhc
Q 007489 388 DGQWLAAVNC-FGDVYIFNLEIQRQHWFI--SRLEGASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEA--KQLGEWSMQ 461 (601)
Q Consensus 388 d~~~las~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~~p~~~~~l~~~~~-dg~v~vwd~~~--~~~~~~~~~ 461 (601)
++++|++.+. --+|.+|+++.++....- ....+.....|.|+| ++++..+.++ +++|-+|..+. +++...+..
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 9999998863 346999999977653221 112457899999999 9998887775 89999999987 454443333
Q ss_pred ccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--cCceEEEEeCCCCCCCCccCccccCCchhhhhhccCCcccccccc
Q 007489 462 HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRK 539 (601)
Q Consensus 462 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 539 (601)
. .+|..|.+ ......|..+|| +.-+++. +.+.|..|.++. .++.|+..+..+.++..||
T Consensus 234 ~--tlP~dF~g-~~~~aaIhis~d--GrFLYasNRg~dsI~~f~V~~-------------~~g~L~~~~~~~teg~~PR- 294 (346)
T COG2706 234 D--TLPEDFTG-TNWAAAIHISPD--GRFLYASNRGHDSIAVFSVDP-------------DGGKLELVGITPTEGQFPR- 294 (346)
T ss_pred c--cCccccCC-CCceeEEEECCC--CCEEEEecCCCCeEEEEEEcC-------------CCCEEEEEEEeccCCcCCc-
Confidence 2 36777665 356889999998 5556555 567788888776 3344666677777888788
Q ss_pred ccccccccccccCCcceEEEeeccceEEeeecCCCeEEEEecCHHH
Q 007489 540 LRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLE 585 (601)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lv~~e~p~~~ 585 (601)
.|. +.+.+.+|.++..+++.|.|++|--..
T Consensus 295 ---------------~F~-i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 295 ---------------DFN-INPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ---------------cce-eCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 677 788999999999999999999997643
No 205
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=7.8e-16 Score=136.33 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=150.5
Q ss_pred CCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccc-------hhhhccccccceEEEEEeCC-CCEEEEEeeCCeE
Q 007489 33 GSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT-------LLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQV 102 (601)
Q Consensus 33 ~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i 102 (601)
..||.+.|..++|+|-+ .||||+.|.+|.||++..+. ++..+.+|...|--++|+|. .+.|+|+|.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 46999999999999966 89999999999999996553 34567799999999999994 5788999999999
Q ss_pred EEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCC
Q 007489 103 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 182 (601)
Q Consensus 103 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (601)
.+|++.+++. +..+. |..-|.++.|+ .||.
T Consensus 157 ~iWnv~tgea-----------------li~l~-hpd~i~S~sfn---------~dGs----------------------- 186 (472)
T KOG0303|consen 157 SIWNVGTGEA-----------------LITLD-HPDMVYSMSFN---------RDGS----------------------- 186 (472)
T ss_pred EEEeccCCce-----------------eeecC-CCCeEEEEEec---------cCCc-----------------------
Confidence 9999999985 44444 99999999998 7776
Q ss_pred CEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCC
Q 007489 183 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 262 (601)
Q Consensus 183 ~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 262 (601)
+|++.+.|..|++||.++.+......
T Consensus 187 -~l~TtckDKkvRv~dpr~~~~v~e~~----------------------------------------------------- 212 (472)
T KOG0303|consen 187 -LLCTTCKDKKVRVIDPRRGTVVSEGV----------------------------------------------------- 212 (472)
T ss_pred -eeeeecccceeEEEcCCCCcEeeecc-----------------------------------------------------
Confidence 99999999999999998743221110
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEEE----cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCe
Q 007489 263 STSLLVQVKSKASRKIICSTISNSGMLFAYS----DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 338 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~ 338 (601)
.........+.|-.+|.++.+| ++..+-||+...-+....+ .++.. .+.|.---|.+|.+.
T Consensus 213 ---------~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~-----~elDt-SnGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 213 ---------AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL-----QELDT-SNGVLLPFYDPDTSI 277 (472)
T ss_pred ---------cccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee-----EEecc-CCceEEeeecCCCCE
Confidence 0001122333455666644444 5667888887652222221 22222 345666668888888
Q ss_pred EEEEe-cCCcEEEEEcCCCc
Q 007489 339 LIIAG-HDRRIYVVDVSSSE 357 (601)
Q Consensus 339 l~~~~-~dg~i~vwd~~~~~ 357 (601)
++.++ .|+.|+.|.+....
T Consensus 278 vYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEEEecCCcceEEEEecCCC
Confidence 76554 58999999987554
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-15 Score=123.81 Aligned_cols=230 Identities=12% Similarity=0.154 Sum_probs=166.7
Q ss_pred eeeccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCcc
Q 007489 221 LVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP 298 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v 298 (601)
.+.+-+++|.+++++.++ |.+.+..+....... ...+.+...-....|+.++..++|. ..+|+++.||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s------a~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS------AEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc------cCCCCCcceeeccccCCCeeeeeee--hhheeeccCceE
Confidence 345567888888888776 788888876543221 1222233333446788999999998 467788888999
Q ss_pred EEEEeecCC---CCcceEEEeeecC--CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccC
Q 007489 299 SLFELKKGK---VGQGEWIINKRQL--PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREI 373 (601)
Q Consensus 299 ~l~~~~~~~---~~~~~~~~~~~~~--~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 373 (601)
+-|..+... ..+.+|++....- .-..+.|+++...|..+-++.++.|+.++-||+++|+..+++.+
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG--------- 154 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG--------- 154 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC---------
Confidence 999887522 2345554432111 12235789999999777777777999999999999999999999
Q ss_pred CCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC---------CCceeEEEecCCCCCEEEEEeCCCe
Q 007489 374 QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE---------GASVTAAGFPPQNNNVLIITTSSNQ 444 (601)
Q Consensus 374 ~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~v~~l~~~p~~~~~l~~~~~dg~ 444 (601)
|.+.|.+++--.....+.+|+.||+++|||+++++....+..+. +..|-+++- +..+|++|+. -.
T Consensus 155 --HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p~ 228 (325)
T KOG0649|consen 155 --HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PK 228 (325)
T ss_pred --CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-Cc
Confidence 99999999985555568899999999999999999887765442 244666665 4568877764 46
Q ss_pred EEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 445 VYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+.+|++.+.+.+. .-..+.++..+.|..+
T Consensus 229 lslwhLrsse~t~------------vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 229 LSLWHLRSSESTC------------VFPIPARVHLVDFVDD 257 (325)
T ss_pred eeEEeccCCCceE------------EEecccceeEeeeecc
Confidence 9999999987543 1234567888888776
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=6.9e-15 Score=135.51 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=151.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
++.+++||.+.|.+ ..|+.-+.+. .|.+.|.|-.|+||| -|++++.||.|++|.-. |-+..++-....+
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~--------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSIS--------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEES 147 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhh--------hhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCce
Confidence 67788999999998 5677777776 899999999999999 89999999999999854 8777777778889
Q ss_pred eEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 81 VNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 81 V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
|.|++|.|+.+.++ +.+ +.+.+=.+..... .-..+.|.+-|.++.|+ +...
T Consensus 148 v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-----------------~i~WkAHDGiiL~~~W~---------~~s~ 199 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG--GHISIKPLAANSK-----------------IIRWRAHDGLVLSLSWS---------TQSN 199 (737)
T ss_pred eEEEEECCCCCceEEecC--CeEEEeecccccc-----------------eeEEeccCcEEEEeecC---------cccc
Confidence 99999999876555 444 3444444433322 44668899999999998 5543
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
++++||.|-..++||......+ ........+++++|+|+..+++..-+
T Consensus 200 ------------------------lI~sgGED~kfKvWD~~G~~Lf--------~S~~~ey~ITSva~npd~~~~v~S~n 247 (737)
T KOG1524|consen 200 ------------------------IIASGGEDFRFKIWDAQGANLF--------TSAAEEYAITSVAFNPEKDYLLWSYN 247 (737)
T ss_pred ------------------------ceeecCCceeEEeecccCcccc--------cCChhccceeeeeeccccceeeeeee
Confidence 9999999999999998753322 22233367889999999655554434
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccE
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPS 299 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~ 299 (601)
..+ +..+..+.|..++||+||..++++ ..|.+.
T Consensus 248 t~R---------------------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 248 TAR---------------------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eee---------------------------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 443 233335779999999999999994 555544
No 208
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.70 E-value=6.3e-15 Score=128.38 Aligned_cols=305 Identities=11% Similarity=0.133 Sum_probs=188.4
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc------------cceeEEEe
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT------------HDVRALTV 145 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~ 145 (601)
..-|.++.|...|.+|++|..+|+|.+|.-..... ..+.....+..|. ..|..+.|
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------~ey~~~t~fqshepEFDYLkSleieEKinkIrw 92 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW 92 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc------------cceeeeeeeeccCcccchhhhhhhhhhhhhcee
Confidence 45688999999999999999999999997654321 0122223333343 23344444
Q ss_pred eccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecc
Q 007489 146 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 225 (601)
Q Consensus 146 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (601)
. +++ +...++..+.|.+|++|.+........ ....+.......+.+
T Consensus 93 ~---------~~~----------------------n~a~FLlstNdktiKlWKi~er~~k~~--~~~~~~~~~~~~~~~- 138 (433)
T KOG1354|consen 93 L---------DDG----------------------NLAEFLLSTNDKTIKLWKIRERGSKKE--GYNLPEEGPPGTITS- 138 (433)
T ss_pred c---------CCC----------------------CccEEEEecCCcceeeeeeeccccccc--cccccccCCCCccce-
Confidence 3 222 234777888999999999876432220 000111101111111
Q ss_pred ccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeec
Q 007489 226 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK 305 (601)
Q Consensus 226 ~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~ 305 (601)
+++-.+...... -...........|...|.+++++.|+..+++++|-.|.+|++..
T Consensus 139 ---------------lr~p~~~~~~~~---------vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei 194 (433)
T KOG1354|consen 139 ---------------LRLPVEGRHDLE---------VEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI 194 (433)
T ss_pred ---------------eeceeeccccce---------eeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence 111110000000 00012333445677889999999999999999999999999987
Q ss_pred CCCCcceEEEeeecCCcCccceeEEEEccC-CCeEEEEecCCcEEEEEcCCCcee----eeeccCccccc-ccCCCCCCC
Q 007489 306 GKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELL----HTFTPCREEHD-REIQPSEPP 379 (601)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d-~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~-~~~~~~~~~ 379 (601)
.++.-.+.++....+.....-|++..|+|. .+.++..+..|+|++-|++...+. +.|..+..... .-...--..
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsS 274 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISS 274 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhh
Confidence 555555544444444444557899999994 567888888999999999744321 12221110000 001123467
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEEEcC-CceEEEEeeccC-----------CCc---eeEEEecCCCCCEEEEEeCCCe
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLE-----------GAS---VTAAGFPPQNNNVLIITTSSNQ 444 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~-----------~~~---v~~l~~~p~~~~~l~~~~~dg~ 444 (601)
|..+.||++|+||++-+.- +|+|||+. ..++..+.+.+. ... -..++|+- ++.++++|+..+.
T Consensus 275 ISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~ 352 (433)
T KOG1354|consen 275 ISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNV 352 (433)
T ss_pred hhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccce
Confidence 8899999999999987654 69999994 334443443221 112 24578998 8889999999999
Q ss_pred EEEEEcCCCC
Q 007489 445 VYVFDVEAKQ 454 (601)
Q Consensus 445 v~vwd~~~~~ 454 (601)
+++|++..+.
T Consensus 353 frvf~~~~gs 362 (433)
T KOG1354|consen 353 FRVFNLARGS 362 (433)
T ss_pred EEEecCCCCc
Confidence 9999977664
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2e-15 Score=149.17 Aligned_cols=233 Identities=17% Similarity=0.115 Sum_probs=154.5
Q ss_pred CCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---CeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 57 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 57 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
+..|.+||.. |...+.+..|...+.+++|+|||+.|+.++.+ ..|.+||+.++.. ..+..+
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---------------~~l~~~ 246 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---------------KVVASF 246 (429)
T ss_pred eEEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---------------EEEecC
Confidence 4789999987 44456677788899999999999999987654 4699999987652 012222
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe-cCCCeEEEE--eccccCCcCCCcc
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKLFAY--CANEFTKFSPHEI 210 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~~~--~~~~~~~~~~~~~ 210 (601)
.+| ....+|+ |||+ .|+.+ ..++.+.+| |+.+..
T Consensus 247 ~g~---~~~~~wS---------PDG~------------------------~La~~~~~~g~~~Iy~~d~~~~~------- 283 (429)
T PRK01742 247 RGH---NGAPAFS---------PDGS------------------------RLAFASSKDGVLNIYVMGANGGT------- 283 (429)
T ss_pred CCc---cCceeEC---------CCCC------------------------EEEEEEecCCcEEEEEEECCCCC-------
Confidence 232 3356777 8886 66554 456654444 443210
Q ss_pred CCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 007489 211 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 290 (601)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 290 (601)
+.++ ..+...+.+.+|+|||+.|
T Consensus 284 --------------------------------------------------------~~~l-t~~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 284 --------------------------------------------------------PSQL-TSGAGNNTEPSWSPDGQSI 306 (429)
T ss_pred --------------------------------------------------------eEee-ccCCCCcCCEEECCCCCEE
Confidence 0011 1123456778999999987
Q ss_pred EE-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCccc
Q 007489 291 AY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE 368 (601)
Q Consensus 291 ~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 368 (601)
+. + .++...||+++........ + .+.. ....|+|||++|++.+.++ +.+||+.+++.......
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~-------l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~---- 371 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASL-------V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST---- 371 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEE-------e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC----
Confidence 76 3 5678999998752221111 1 1122 3568999999998887765 66799988765432221
Q ss_pred ccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC--CceEEEEeeccCCCceeEEEecC
Q 007489 369 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE--IQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 369 ~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
. ....+.|+|||++|++++.++.+.+|.+. +++....+.. +.+.+...+|+|
T Consensus 372 -------~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~-~~g~~~~p~wsp 425 (429)
T PRK01742 372 -------F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG-SDGQVKFPAWSP 425 (429)
T ss_pred -------C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC-CCCCCCCcccCC
Confidence 1 23467899999999999999988888753 4555556654 345788899998
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=4.1e-15 Score=126.50 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=169.8
Q ss_pred CCceEEEEEEEeeCC-----eEEEEcCCCcEEEeeCCc--cc--hhhhc-----cccccceEEEEEeC-CCCEEEEEeeC
Q 007489 35 GPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRH--GT--LLQAH-----SFHKGDVNALAAAP-SHNRVFSTGSD 99 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-----~l~s~~~dg~i~vwd~~~--~~--~~~~~-----~~h~~~V~~l~~s~-~~~~l~s~~~d 99 (601)
.|.-+++.+.|.|+. .|++.+. -.+++|.+.. .+ +...+ ..+.+++++..|+. |-++|.+++.|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 689999999999875 2333333 3799998863 22 12222 24678999999988 67889999999
Q ss_pred CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccccccc
Q 007489 100 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 100 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
-+..|||++++.. .....++-.|...|..++|. .++.
T Consensus 173 TTCTiWdie~~~~--------------~~vkTQLIAHDKEV~DIaf~---------~~s~-------------------- 209 (364)
T KOG0290|consen 173 TTCTIWDIETGVS--------------GTVKTQLIAHDKEVYDIAFL---------KGSR-------------------- 209 (364)
T ss_pred CeEEEEEEeeccc--------------cceeeEEEecCcceeEEEec---------cCcc--------------------
Confidence 9999999999732 11145678999999999997 4333
Q ss_pred CCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCC
Q 007489 180 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 259 (601)
Q Consensus 180 ~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 259 (601)
+.+++.|.||.+++||++...- . --||.-.
T Consensus 210 ---~~FASvgaDGSvRmFDLR~leH----S-------------------------------TIIYE~p------------ 239 (364)
T KOG0290|consen 210 ---DVFASVGADGSVRMFDLRSLEH----S-------------------------------TIIYEDP------------ 239 (364)
T ss_pred ---ceEEEecCCCcEEEEEeccccc----c-------------------------------eEEecCC------------
Confidence 5999999999999999986321 0 0011100
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC-
Q 007489 260 GHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD- 335 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d- 335 (601)
....+...++|+++. +++|+ . +...|.|.|++. ....+ ..+.+|...|+.|+|.|.
T Consensus 240 -------------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--P~tpv-----a~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 240 -------------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--PCTPV-----ARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred -------------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--CCcce-----ehhhcCcccccceEecCCC
Confidence 002445666777644 67777 3 667889999986 33333 678899999999999995
Q ss_pred CCeEEEEecCCcEEEEEcCCCce------eeeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecC
Q 007489 336 SSQLIIAGHDRRIYVVDVSSSEL------LHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCF 398 (601)
Q Consensus 336 ~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~d 398 (601)
...|++++.|..+.+||+.+.-. +..+. ....|+.+.|++ ...+|+.+...
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~------------a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYT------------AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CceeeecCCcceEEEEecccccccCCCCchhhhh------------ccceeeeeeecccCCCEEEEEecC
Confidence 46799999999999999964321 11111 467899999996 56788877644
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=3.6e-15 Score=126.85 Aligned_cols=251 Identities=16% Similarity=0.157 Sum_probs=169.6
Q ss_pred eeeccccCCCe-----EEEEEeCCeeEEeeccccCCcc-cCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-
Q 007489 221 LVHNTIFSHTS-----LLLVQYSCRLDILSVRLENNVE-SRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY- 292 (601)
Q Consensus 221 ~~~~~~~~~~~-----~~l~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~- 292 (601)
.++.+.|.|+. .+|++.+..+++|++...+... ....+ ..........++++..|+. +-++|.+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L--------~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVL--------NNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhh--------ccCcccccCCcccccccccCCcceeEee
Confidence 44455566654 4889999999999998654321 00000 0011223346788888876 4467777
Q ss_pred EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCceeeeeccCcccccc
Q 007489 293 SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR 371 (601)
Q Consensus 293 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 371 (601)
+-|.+..||++.....+. + +..+..|...|..|+|...+ +.+|+.+.||.|++||++..+.-..+.....
T Consensus 170 SiDTTCTiWdie~~~~~~----v-kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~---- 240 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGT----V-KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS---- 240 (364)
T ss_pred cccCeEEEEEEeeccccc----e-eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC----
Confidence 689999999999721111 1 35678899999999999865 4689999999999999987765443332110
Q ss_pred cCCCCCCCeeEEEEccC-CCEEEEEecC-CeEEEEEcCCce-EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 372 EIQPSEPPITKMFTSSD-GQWLAAVNCF-GDVYIFNLEIQR-QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 372 ~~~~~~~~i~~l~~spd-~~~las~~~d-g~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
...+...++|++. -+|+|+-..| ..|.|.|+.... ....+.. |.+.|.+++|.|.....|.+++.|.++.+|
T Consensus 241 ----~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 241 ----PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ----CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEecCCCCceeeecCCcceEEEE
Confidence 3567888999884 5678875544 469999987653 3444554 668999999999778899999999999999
Q ss_pred EcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEE
Q 007489 449 DVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMC 500 (601)
Q Consensus 449 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~ 500 (601)
|+.+.-. .+.....-.+. -.+.|..+.|+|. .++-+-+...+.+-
T Consensus 316 Dl~q~~~-----~~~~dPilay~-a~~EVNqi~Ws~~-~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 316 DLQQMPR-----ENGEDPILAYT-AGGEVNQIQWSSS-QPDWIAICFGKKLE 360 (364)
T ss_pred ecccccc-----cCCCCchhhhh-ccceeeeeeeccc-CCCEEEEEecCeee
Confidence 9986421 00001111222 3468999999988 55555544444433
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=144.29 Aligned_cols=296 Identities=18% Similarity=0.195 Sum_probs=210.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC---eEEEEcCCCcEEEeeCCc-cch--hhhc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRH-GTL--LQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~l~s~~~dg~i~vwd~~~-~~~--~~~~ 74 (601)
.|++||.|..|.+||..++....++.. +|...|..-.|.|.. .|++++.||.|++=.+.. +.+ ...+
T Consensus 156 ~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 156 VLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred eeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 489999999999999999999888874 899999999998854 899999999999987643 332 3456
Q ss_pred cccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc---ceeEEEeecccc
Q 007489 75 SFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH---DVRALTVAVPIS 150 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~ 150 (601)
..|.++|.-++.-|+. ..|+++|.|+.+.-+|++.+..... . .....+.. ...+++..
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~-----------~---~cr~~~~~~~v~L~~Ia~~---- 290 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK-----------F---VCREADEKERVGLYTIAVD---- 290 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-----------e---eeeccCCccceeeeeEecC----
Confidence 6799999999999965 5678999999999999988764111 1 12222333 34555554
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|-.. ..+++++.|..+++||.+......... .+.. |.|.
T Consensus 291 -----P~nt-----------------------~~faVgG~dqf~RvYD~R~~~~e~~n~-----------~~~~--f~p~ 329 (559)
T KOG1334|consen 291 -----PRNT-----------------------NEFAVGGSDQFARVYDQRRIDKEENNG-----------VLDK--FCPH 329 (559)
T ss_pred -----CCCc-----------------------cccccCChhhhhhhhcccchhhccccc-----------hhhh--cCCc
Confidence 3332 489999999999999988643211100 0000 0000
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEEcCCccEEEEeecCCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYSDHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~~~v~l~~~~~~~~~ 309 (601)
.+.......|+|++++.++ .+|++-.|-.|++|.-....+.
T Consensus 330 --------------------------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 330 --------------------------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred --------------------------------------cccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 0111224679999999666 5566668888999965543221
Q ss_pred cce-----EEEeeecCCcCcc--ceeEEE-EccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCee
Q 007489 310 QGE-----WIINKRQLPRKLQ--FAHSMI-FSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 310 ~~~-----~~~~~~~~~~~~~--~v~~i~-~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 381 (601)
... -+..+....+|.+ .|..+- |-|...|+++|+.-|.|.||+-.+++.++-+.+. ..-|+
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-----------r~VVN 440 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-----------RHVVN 440 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-----------cceEe
Confidence 110 0011222455644 355554 5678899999999999999999999999988883 44899
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCceE
Q 007489 382 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 382 ~l~~spd~~~las~~~dg~i~iwd~~~~~~ 411 (601)
||.=+|.-..||+++.|..|+||-..+.+.
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCcccc
Confidence 999999999999999999999998755443
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.4e-15 Score=147.57 Aligned_cols=170 Identities=17% Similarity=0.149 Sum_probs=117.0
Q ss_pred EEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCC
Q 007489 279 ICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSS 355 (601)
Q Consensus 279 ~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~ 355 (601)
..++|+|||+.|++ + .++.+.||.++.. +..+ ..+..+...+....|+|||+.|+..+ .+|...||++..
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~--~~~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGAN--GGTP-----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECC--CCCe-----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 46789999998887 3 5777777766541 2222 22333445577899999999877665 568888887643
Q ss_pred C-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCC
Q 007489 356 S-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 356 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
. .....+ . +.. ..+.|||||++|+..+.++ +.+||+.+++........ ...++.|+| +++
T Consensus 324 ~~~~~~~l-~-----------~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sP-dG~ 384 (429)
T PRK01742 324 SGGGASLV-G-----------GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISP-NGI 384 (429)
T ss_pred CCCCeEEe-c-----------CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECC-CCC
Confidence 2 222222 2 332 3578999999999887765 666999988764332221 345678999 999
Q ss_pred EEEEEeCCCeEEEEEcC--CCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 435 VLIITTSSNQVYVFDVE--AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+|+.++.++.+.+|.+. ++. ..+.+..|.+.+..++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~-----------~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGR-----------FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCC-----------ceEEccCCCCCCCCcccCCC
Confidence 99999999988888763 233 24456677788899999985
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=6e-15 Score=148.94 Aligned_cols=318 Identities=10% Similarity=0.065 Sum_probs=196.4
Q ss_pred EECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCcc-------chhhhccccccceEEE
Q 007489 14 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG-------TLLQAHSFHKGDVNAL 84 (601)
Q Consensus 14 wd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l 84 (601)
|++ +|..+..+. .|...|..++.++.. +++||+.||+|++||...- +...++......+.++
T Consensus 1034 W~p-~G~lVAhL~--------Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH--------EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCc-cceEeehhh--------hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence 664 377777777 799999999888554 9999999999999998531 1222333346789999
Q ss_pred EEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc-ceeEE-EeeccccCCCCCCcccccc
Q 007489 85 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-DVRAL-TVAVPISREDPLPEDKVKR 162 (601)
Q Consensus 85 ~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l-~~~~~~~~~~~~~d~~~~~ 162 (601)
...+.++.++.++.||.|.+.+++....... .-.+......+.. .+.+| ++. ...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~----------~~~~~ri~n~~~~g~vv~m~a~~---------~~~---- 1161 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKR----------VATQVRIPNLKKDGVVVSMHAFT---------AIV---- 1161 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccc----------eeeeeecccccCCCceEEeeccc---------ccc----
Confidence 9999999999999999999999887321000 0000111111111 11111 111 000
Q ss_pred cCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeE
Q 007489 163 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 242 (601)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~ 242 (601)
....++.+..-+.|..||++... .
T Consensus 1162 ------------------~S~~lvy~T~~~~iv~~D~r~~~--------------------------------------~ 1185 (1431)
T KOG1240|consen 1162 ------------------QSHVLVYATDLSRIVSWDTRMRH--------------------------------------D 1185 (1431)
T ss_pred ------------------cceeEEEEEeccceEEecchhhh--------------------------------------h
Confidence 01256666666777777776421 1
Q ss_pred EeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCC
Q 007489 243 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLP 321 (601)
Q Consensus 243 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 321 (601)
+|.+.... ..+.|++++++|.+.+++.| +.|.+.+||++. ...+ ..-..+
T Consensus 1186 ~w~lk~~~-----------------------~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF---~~~i---~sw~~P 1236 (1431)
T KOG1240|consen 1186 AWRLKNQL-----------------------RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF---RVPI---LSWEHP 1236 (1431)
T ss_pred HHhhhcCc-----------------------cccceeEEEecCCceEEEEecCCceEEEEEeec---Ccee---ecccCc
Confidence 22222111 13779999999999999995 788999999997 2221 112223
Q ss_pred cCccceeEEEEcc---CCCeEEEEe--cCCcEEEEEcCCCceeeeeccCcccc-c-------ccCCCCCCCeeEEEEccC
Q 007489 322 RKLQFAHSMIFSY---DSSQLIIAG--HDRRIYVVDVSSSELLHTFTPCREEH-D-------REIQPSEPPITKMFTSSD 388 (601)
Q Consensus 322 ~~~~~v~~i~~s~---d~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~i~~l~~spd 388 (601)
. ..+++.+..+| .....++++ ..+.|.+|++.+|....+|....... . ....++.-.....++..-
T Consensus 1237 ~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1237 A-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK 1315 (1431)
T ss_pred c-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC
Confidence 3 35666666665 334555444 46789999999997777776541100 0 000122222333444445
Q ss_pred CCEEEEEecCCeEEEEEcCCceEE------------------------------------------------EE------
Q 007489 389 GQWLAAVNCFGDVYIFNLEIQRQH------------------------------------------------WF------ 414 (601)
Q Consensus 389 ~~~las~~~dg~i~iwd~~~~~~~------------------------------------------------~~------ 414 (601)
+.++.+|+.|..|+.||....... ..
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred CceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 668899999999999997321110 00
Q ss_pred -eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 415 -ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 415 -~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
....|..+|++|++...+..+|++++.||.|.||.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 01123467888888774556889999999999993
No 215
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=126.92 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=174.9
Q ss_pred CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccc
Q 007489 91 NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 170 (601)
Q Consensus 91 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 170 (601)
+.++++-..|.|++||..+++. +..+.+|...+..+.|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----------------l~~fk~~~~~~N~vrf~---------~~d------------ 82 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----------------LEEFKGPPATTNGVRFI---------SCD------------ 82 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----------------hheecCCCCcccceEEe---------cCC------------
Confidence 5678888899999999999875 77888898888888886 211
Q ss_pred cccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccC
Q 007489 171 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 250 (601)
Q Consensus 171 ~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~ 250 (601)
....+++|+.||+|++||++............
T Consensus 83 ----------s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-------------------------------------- 114 (376)
T KOG1188|consen 83 ----------SPHGVISCSSDGTVRLWDIRSQAESARISWTQ-------------------------------------- 114 (376)
T ss_pred ----------CCCeeEEeccCCeEEEEEeecchhhhheeccC--------------------------------------
Confidence 12489999999999999999744222111000
Q ss_pred CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-----cCCccEEEEeecCCCCcceEEEeeecCCcCcc
Q 007489 251 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-----DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ 325 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (601)
.......|++..-.++.++++ .+-.+.+||.+..+. .+ ..-...|..
T Consensus 115 ----------------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l----~~~~eSH~D 166 (376)
T KOG1188|consen 115 ----------------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LL----RQLNESHND 166 (376)
T ss_pred ----------------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hh----hhhhhhccC
Confidence 001345566666667777764 456789999997221 11 234567889
Q ss_pred ceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCc----eeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCC
Q 007489 326 FAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSE----LLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFG 399 (601)
Q Consensus 326 ~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg 399 (601)
.|+++.|+| +-++|++|+.||-|.+||+.... ++.++. +...|.++.|..++ +.|.+-+..+
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN------------~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN------------HGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred cceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc------------ccceeeeeeeecCCcceEEEEEccC
Confidence 999999999 55789999999999999986432 334443 77889999999887 4588888999
Q ss_pred eEEEEEcCCceEEEEeeccCC-----------CceeEEEecCCCCCEEEEEeC-CCeEEEEEcCCCCcccchhcccCCcC
Q 007489 400 DVYIFNLEIQRQHWFISRLEG-----------ASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~-----------~~v~~l~~~p~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
...+|+++.+.....++...- ..+.. +.+|.+....++++. -|...++-+...+.. .....+
T Consensus 235 tf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~-----~~~~~~ 308 (376)
T KOG1188|consen 235 TFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSG-----SLLTEP 308 (376)
T ss_pred ceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccc-----cccCcc
Confidence 999999998875444333210 11112 123435666666665 566666554421110 011123
Q ss_pred ccccc-CCCcEEEEEeCCC
Q 007489 468 RRYQE-FPGEVIGLSFSPS 485 (601)
Q Consensus 468 ~~~~~-~~~~v~~i~~~p~ 485 (601)
..+.+ |..-|.++.|...
T Consensus 309 a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 309 AILQGGHEEIVRDILFDVK 327 (376)
T ss_pred ccccCCcHHHHHHHhhhcc
Confidence 44555 5567788888754
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.2e-14 Score=122.08 Aligned_cols=291 Identities=12% Similarity=0.131 Sum_probs=188.2
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCc----cch-----
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH----GTL----- 70 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~----~~~----- 70 (601)
+|++..|-.||+||-.. .+...++. .-+..|.|++|-|.+ .|+.|+.. -|+||.... ++.
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s 183 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMS 183 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccc
Confidence 56788888999999665 66666663 456789999999988 56666665 599997642 111
Q ss_pred ---hh--hccccccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEE
Q 007489 71 ---LQ--AHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 144 (601)
Q Consensus 71 ---~~--~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 144 (601)
.+ ..++| .+|++|.|++||..+++++. |..|.|||.+++.. ..........+.-+.
T Consensus 184 ~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-----------------~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 184 THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-----------------IPLIPKGLGGFSLLK 245 (445)
T ss_pred ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-----------------ccccccCCCceeeEE
Confidence 11 22345 68999999999999998875 57799999999874 222223456677889
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeec
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN 224 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (601)
|+ ||+. .|+++.-|+..++|+....-....
T Consensus 246 wS---------Pdgd------------------------~lfaAt~davfrlw~e~q~wt~er----------------- 275 (445)
T KOG2139|consen 246 WS---------PDGD------------------------VLFAATCDAVFRLWQENQSWTKER----------------- 275 (445)
T ss_pred Ec---------CCCC------------------------EEEEecccceeeeehhcccceecc-----------------
Confidence 98 8886 999999999999996543110000
Q ss_pred cccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEee
Q 007489 225 TIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELK 304 (601)
Q Consensus 225 ~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~ 304 (601)
|- -..+.|...+|+|+|++|..+..++-++|.+.
T Consensus 276 -------------------w~---------------------------lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 276 -------------------WI---------------------------LGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred -------------------ee---------------------------ccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 00 11257888999999999999888888888887
Q ss_pred cCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEE
Q 007489 305 KGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF 384 (601)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 384 (601)
...+... +.. .++......+-|+..- ....+.+ ...+.+.+++
T Consensus 310 f~~~~~~--------~~~------------------~~~~k~~lliaDL~e~---ti~ag~~--------l~cgeaq~la 352 (445)
T KOG2139|consen 310 FDGEDSV--------FLR------------------PQSIKRVLLIADLQEV---TICAGQR--------LCCGEAQCLA 352 (445)
T ss_pred ecCCCcc--------ccC------------------cccceeeeeeccchhh---hhhcCcc--------cccCccceee
Confidence 5111100 000 1111112223333211 0111100 0456789999
Q ss_pred EccCCCEEEEEecCC--------eEEEEEcCCceEEEEee-cc-CCCceeEEEecC--CCCCEEEEEeCCCeEEEEEcCC
Q 007489 385 TSSDGQWLAAVNCFG--------DVYIFNLEIQRQHWFIS-RL-EGASVTAAGFPP--QNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 385 ~spd~~~las~~~dg--------~i~iwd~~~~~~~~~~~-~~-~~~~v~~l~~~p--~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
|.|.|.|||+.-..+ .|.+||....-...... .+ .+.....++|+| .++.+|.++=..|.+.-|++.-
T Consensus 353 wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 353 WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred ECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 999999999865433 46677766544432221 11 223466677777 3566777777788888887653
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3.1e-14 Score=143.87 Aligned_cols=277 Identities=13% Similarity=0.168 Sum_probs=183.8
Q ss_pred eeCCccchhhhccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccccee
Q 007489 63 WDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR 141 (601)
Q Consensus 63 wd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 141 (601)
|+.+ |.++..+..|...|..++.++.. .+++|||.||+|++|+...-... ........++..-...+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----------~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----------GGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----------cceeeeeEEEeccCCceE
Confidence 7766 88999999999999999998855 99999999999999998764320 001111111222345666
Q ss_pred EEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceee
Q 007489 142 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 221 (601)
Q Consensus 142 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (601)
.+.+. +.+. .++.++.||.|.+.++.........
T Consensus 1103 ~vt~~---------~~~~------------------------~~Av~t~DG~v~~~~id~~~~~~~~------------- 1136 (1431)
T KOG1240|consen 1103 KVTMC---------GNGD------------------------QFAVSTKDGSVRVLRIDHYNVSKRV------------- 1136 (1431)
T ss_pred EEEec---------cCCC------------------------eEEEEcCCCeEEEEEccccccccce-------------
Confidence 66665 5554 8999999999999988752100000
Q ss_pred eeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeE-EEEEcC-CCC-EEEE-EcCCc
Q 007489 222 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII-CSTISN-SGM-LFAY-SDHVK 297 (601)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~-~g~-~l~~-~~~~~ 297 (601)
+. .++ .......+.+. .-++.. .+. .+++ ...+.
T Consensus 1137 -------------~~---~~r--------------------------i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1137 -------------AT---QVR--------------------------IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred -------------ee---eee--------------------------cccccCCCceEEeecccccccceeEEEEEeccc
Confidence 00 000 00111112222 222222 122 4455 57788
Q ss_pred cEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCC
Q 007489 298 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 377 (601)
Q Consensus 298 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (601)
+..||.+. ...+|.++ .....+.|++++.+|.+.++++|+..|.+.+||++-+.++.....+ +.
T Consensus 1175 iv~~D~r~---~~~~w~lk---~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P----------~~ 1238 (1431)
T KOG1240|consen 1175 IVSWDTRM---RHDAWRLK---NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP----------AR 1238 (1431)
T ss_pred eEEecchh---hhhHHhhh---cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc----------cc
Confidence 99999986 44455433 3444568999999999999999999999999999988887777654 56
Q ss_pred CCeeEEEEccCC---CEEEEEe--cCCeEEEEEcCCceEEEEeeccCC------------------CceeEEEecCCCCC
Q 007489 378 PPITKMFTSSDG---QWLAAVN--CFGDVYIFNLEIQRQHWFISRLEG------------------ASVTAAGFPPQNNN 434 (601)
Q Consensus 378 ~~i~~l~~spd~---~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~~p~~~~ 434 (601)
.+|..+..+|-. .+.++++ ..+.|.+|++.++.+..++....+ -......+.. .+.
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~ 1317 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNG 1317 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCc
Confidence 788888877643 4555444 578899999999877666543311 0112233443 567
Q ss_pred EEEEEeCCCeEEEEEcCCCCc
Q 007489 435 VLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~~~ 455 (601)
++++|+.|..|+.||....+.
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeecCCccceeeccCCCccc
Confidence 899999999999999987653
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.64 E-value=8.1e-13 Score=132.02 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=116.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh-hccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-AHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~-~~~~h~ 78 (601)
++++|+.-+.|.+|+...-..-.++. +|++.|.++.++-|| ++++.+.|.++++|++.+++... +.-+|+
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~--------GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLK--------GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEeccccccEEEEeccccCCcceec--------ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 47899999999999987333333455 999999999999999 99999999999999999988776 666899
Q ss_pred cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc-cceeEEEeeccccCCCCCCc
Q 007489 79 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~d 157 (601)
+.|+.++|.|+ .++|++.|.+.++|+.+..+ +..+..|. ..+..++.. ++
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~------------------l~~y~~h~g~~iw~~~~~---------~~ 269 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ------------------LEVYDEHSGKGIWKIAVP---------IG 269 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecccce------------------ehhhhhhhhcceeEEEEc---------CC
Confidence 99999999988 99999999999999777655 34566664 467888875 33
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 201 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~ 201 (601)
. ..+++++.|+.+++|+...
T Consensus 270 ~------------------------~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 V------------------------IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c------------------------eEEEeeccCcchhhhhhhc
Confidence 3 3899999999999999875
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=5.5e-14 Score=121.40 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=113.0
Q ss_pred EEEEEcCCCCEEEE-Ec----------CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe--cC
Q 007489 279 ICSTISNSGMLFAY-SD----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--HD 345 (601)
Q Consensus 279 ~~~~~s~~g~~l~~-~~----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~--~d 345 (601)
..+.|+++|.+|++ .. .+...+|.++..+..... ..+.. .++|.+++|+|+|+.||+.. .+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~-----i~l~~-~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES-----IELKK-EGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce-----eeccC-CCceEEEEECcCCCEEEEEEccCC
Confidence 45779999988887 32 234667777652222221 22222 34699999999999976653 56
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec---CCeEEEEEcCCceEEEEeeccCCCc
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGAS 422 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 422 (601)
+.|.+||++ ++.+..+. ...++.+.|||+|++|++++. .|.|.+||+++.+.+.... ...
T Consensus 83 ~~v~lyd~~-~~~i~~~~-------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~ 145 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG-------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSD 145 (194)
T ss_pred cccEEEcCc-ccEeEeec-------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCc
Confidence 789999996 66666664 346788999999999998874 4679999999888754433 346
Q ss_pred eeEEEecCCCCCEEEEEeC------CCeEEEEEcCCCCc
Q 007489 423 VTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 455 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~------dg~v~vwd~~~~~~ 455 (601)
++.++|+| +|++|+++.. |+.++||+.....+
T Consensus 146 ~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 146 ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 89999999 9999999874 78899999987654
No 220
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=3e-12 Score=122.63 Aligned_cols=291 Identities=15% Similarity=0.214 Sum_probs=185.1
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-c----CCccEEEEeecCCCCcceE
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-D----HVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~----~~~v~l~~~~~~~~~~~~~ 313 (601)
+.|.+++++...... ..+.. .........++++|++++|.+. . .+.|..|++... ...+-
T Consensus 13 ~gI~~~~~d~~~g~l-----------~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~--~g~L~ 77 (345)
T PF10282_consen 13 GGIYVFRFDEETGTL-----------TLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD--TGTLT 77 (345)
T ss_dssp TEEEEEEEETTTTEE-----------EEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT--TTEEE
T ss_pred CcEEEEEEcCCCCCc-----------eEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC--cceeE
Confidence 567777775444321 11222 2234677889999999988883 2 568888888862 12221
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEcCC-Cceeeeec--cCcccccccCCCCCCCeeEEEEccCC
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SELLHTFT--PCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
.+...... ......++++|++++|+++.. +|.|.++++.. +.+..... .+................++.|+|||
T Consensus 78 ~~~~~~~~--g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 78 LLNSVPSG--GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEEEEES--SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred EeeeeccC--CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 23322222 234478999999999999885 79999999976 44332211 00000000001134568899999999
Q ss_pred CEEEEEec-CCeEEEEEcCCce--E--EEEeeccCCCceeEEEecCCCCCEEEEEe-CCCeEEEEEcC--CCCcccchhc
Q 007489 390 QWLAAVNC-FGDVYIFNLEIQR--Q--HWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVE--AKQLGEWSMQ 461 (601)
Q Consensus 390 ~~las~~~-dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~~--~~~~~~~~~~ 461 (601)
++|++.+. ...|++|+++... . ...+....+....++.|+| +++++.+.. .+++|.+|++. .+.+......
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 99888753 4579999997654 3 2233444567899999999 998887776 47889999998 5544443332
Q ss_pred ccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--cCceEEEEeCCCCCCCCccCccccCCchhhhhhccCCcccccccc
Q 007489 462 HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRK 539 (601)
Q Consensus 462 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 539 (601)
.. ++..+.+ .....+|+++|| ++.+++- +.+.+.+|+++. +++.++.++..+..++.||
T Consensus 235 ~~--~~~~~~~-~~~~~~i~ispd--g~~lyvsnr~~~sI~vf~~d~-------------~~g~l~~~~~~~~~G~~Pr- 295 (345)
T PF10282_consen 235 ST--LPEGFTG-ENAPAEIAISPD--GRFLYVSNRGSNSISVFDLDP-------------ATGTLTLVQTVPTGGKFPR- 295 (345)
T ss_dssp ES--CETTSCS-SSSEEEEEE-TT--SSEEEEEECTTTEEEEEEECT-------------TTTTEEEEEEEEESSSSEE-
T ss_pred ee--ccccccc-cCCceeEEEecC--CCEEEEEeccCCEEEEEEEec-------------CCCceEEEEEEeCCCCCcc-
Confidence 22 2222222 237899999999 6677776 578899999854 1233455555555666676
Q ss_pred ccccccccccccCCcceEEEeeccceEEeeecCCCeEEEEecC
Q 007489 540 LRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKP 582 (601)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lv~~e~p 582 (601)
.|. +++.+.+|+++..+++.|.++++-
T Consensus 296 ---------------~~~-~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 ---------------HFA-FSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ---------------EEE-E-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ---------------EEE-EeCCCCEEEEEecCCCeEEEEEEe
Confidence 677 678899999999999999999884
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=5.8e-13 Score=126.96 Aligned_cols=323 Identities=14% Similarity=0.171 Sum_probs=187.5
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEE
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 129 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 129 (601)
.+++-..+|.|.|.|..+.+.+.++....+.-..+.|+|||+++++++.||.|.++|+.+.+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----------------- 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----------------- 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------
Confidence 346677889999999999999999986554445578999999999999999999999999874
Q ss_pred ecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe-cCCCeEEEEeccccCCcCCC
Q 007489 130 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKLFAYCANEFTKFSPH 208 (601)
Q Consensus 130 ~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~~~~~~~~~~~~~~ 208 (601)
+..+.. .....+++++ +||+ +++++ ..++.+.++|.++.+.+...
T Consensus 71 v~~i~~-G~~~~~i~~s---------~DG~------------------------~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVS---------PDGK------------------------YVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEEE--SSEEEEEEE-----------TTT------------------------EEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEEec-CCCcceEEEc---------CCCC------------------------EEEEEecCCCceeEeccccccceeec
Confidence 444443 4456788988 8987 66655 46789999998874422211
Q ss_pred ccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC
Q 007489 209 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM 288 (601)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 288 (601)
..... .. ......+.++..+|...
T Consensus 117 ~~~~~---------------------------------~~-----------------------~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 117 PTGGM---------------------------------PV-----------------------DGPESRVAAIVASPGRP 140 (369)
T ss_dssp E--EE----------------------------------T-----------------------TTS---EEEEEE-SSSS
T ss_pred ccccc---------------------------------cc-----------------------cccCCCceeEEecCCCC
Confidence 10000 00 00124567777788887
Q ss_pred EEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE-ecCCcEEEEEcCCCceeeeeccCcc
Q 007489 289 LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 289 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~ 367 (601)
.++++-...-++|-++..+. ..+ ...... .........|+|++++++++ ..++.|-++|..+++.+..+.....
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~-~~~-~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDP-KNL-KVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp EEEEEETTTTEEEEEETTTS-SCE-EEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred EEEEEEccCCeEEEEEeccc-ccc-ceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc
Confidence 66654332334454443222 221 111111 12244678999999987665 4567899999998887766543211
Q ss_pred cccccCCCCCCCeeEE-------EE--ccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEE
Q 007489 368 EHDREIQPSEPPITKM-------FT--SSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLII 438 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l-------~~--spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~ 438 (601)
. |..+...+ .| +..+...++.-....+.+|+....+....++.. +.+ .-+.-+| ++++|.+
T Consensus 216 p-------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~-G~g-lFi~thP-~s~~vwv 285 (369)
T PF02239_consen 216 P-------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ-GGG-LFIKTHP-DSRYVWV 285 (369)
T ss_dssp B-------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S-SSS---EE--T-T-SEEEE
T ss_pred c-------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC-CCc-ceeecCC-CCccEEe
Confidence 1 33333322 12 223333333333345778999999988888863 444 6778899 9999999
Q ss_pred E----eCCCeEEEEEcCCCCcccchhcccCCcCcccccC-CCcEEEEEeCCCCCCCEEEEEcCc-eEEEEeCC
Q 007489 439 T----TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF-PGEVIGLSFSPSPSSSSVIIYSAR-AMCVIDFG 505 (601)
Q Consensus 439 ~----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~~~~~~~~~-~~~~~~~~ 505 (601)
. ...++|.++|.++.+.. ..+... ...+..+.|+++|..-.+-+|+.+ .+.++|-.
T Consensus 286 d~~~~~~~~~v~viD~~tl~~~-----------~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTLKVV-----------KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp E-TT-SSHT-EEEEECCGTEEE-----------E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred eccCCCCCceEEEEECcCccee-----------EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 8 34589999999987531 122211 135999999999433344466777 78888854
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=3.7e-14 Score=130.88 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 276 RKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
..|...+|+|||++||+ +.||.+|||+... +.+. ..+....+...|++|||||+||++|++|.-|.||.+.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt----~eLl----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT----QELL----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccH----HHHH----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 57889999999999999 9999999999985 2221 3344456788999999999999999999999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
..+.+..=++ |..+|+.++|.|
T Consensus 363 erRVVARGqG-----------HkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQG-----------HKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccc-----------cccceeeEeecc
Confidence 9998888777 999999999976
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.2e-14 Score=138.05 Aligned_cols=236 Identities=12% Similarity=0.111 Sum_probs=147.5
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---CeEEEEEeccCcCCCCCCCCCccccceeEEecCcc
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 134 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (601)
..|.+||.. +.....+..|...+.+.+|+|||+.|+..+.+ ..|.+|++.++.. ..+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------------------~~l~ 244 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------------------ELVA 244 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------------------EEec
Confidence 469999986 55555666778889999999999999877643 4699999987652 2222
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC--eEEEEeccccCCcCCCccCC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--KLFAYCANEFTKFSPHEICP 212 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~~~~~~~~~~~~~~~~~~ 212 (601)
.+.....+.+|+ |||+ .++++.+.++ .|++||+.+...
T Consensus 245 ~~~g~~~~~~~S---------pDG~-----------------------~l~~~~s~~g~~~Iy~~d~~~g~~-------- 284 (433)
T PRK04922 245 SFRGINGAPSFS---------PDGR-----------------------RLALTLSRDGNPEIYVMDLGSRQL-------- 284 (433)
T ss_pred cCCCCccCceEC---------CCCC-----------------------EEEEEEeCCCCceEEEEECCCCCe--------
Confidence 223334466777 8886 2344555555 577777654210
Q ss_pred CCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE
Q 007489 213 APQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY 292 (601)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 292 (601)
.++. .+.......+|+|||+.|++
T Consensus 285 -------------------------------------------------------~~lt-~~~~~~~~~~~spDG~~l~f 308 (433)
T PRK04922 285 -------------------------------------------------------TRLT-NHFGIDTEPTWAPDGKSIYF 308 (433)
T ss_pred -------------------------------------------------------EECc-cCCCCccceEECCCCCEEEE
Confidence 0000 11123356789999998887
Q ss_pred E--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC---cEEEEEcCCCceeeeeccCcc
Q 007489 293 S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR---RIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 293 ~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~ 367 (601)
. .++...+|.++........ ....+ ......+|+|||++|+..+.++ .|.+||+.+++.. .+..
T Consensus 309 ~sd~~g~~~iy~~dl~~g~~~~-----lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--- 377 (433)
T PRK04922 309 TSDRGGRPQIYRVAASGGSAER-----LTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--- 377 (433)
T ss_pred EECCCCCceEEEEECCCCCeEE-----eecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---
Confidence 4 3445556655431111111 11111 2234689999999998876543 5999999877654 3332
Q ss_pred cccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 368 EHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
........|+|||++|+..+.+ +.|.++++++... ..+.. +...+...+|+|
T Consensus 378 ---------~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l~~-~~g~~~~p~wsp 432 (433)
T PRK04922 378 ---------GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRLVS-ADGEVREPAWSP 432 (433)
T ss_pred ---------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEccc-CCCCCCCCccCC
Confidence 2234457999999998876653 4688888876543 34443 234677778887
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.7e-13 Score=126.33 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=131.3
Q ss_pred CCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 285 NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 285 ~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
|...+++++....|+-++|.. |.-+ ..+....+.++++..++...+|++|+.+|.|..||..+...+.++..
T Consensus 144 ~scDly~~gsg~evYRlNLEq---GrfL-----~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 144 PSCDLYLVGSGSEVYRLNLEQ---GRFL-----NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred CCccEEEeecCcceEEEEccc---cccc-----cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 344566666666777777764 5544 33444457899999999999999999999999999988777777665
Q ss_pred CcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCe
Q 007489 365 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ 444 (601)
Q Consensus 365 ~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~ 444 (601)
........-......|+++.|+.||-.+++|..+|.|.|||+.+.++...-......+|..+.|.+.+.+--++......
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~ 295 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRI 295 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHH
Confidence 33211111111334599999999999999999999999999999988643332233789999998833333344445678
Q ss_pred EEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE
Q 007489 445 VYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY 494 (601)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 494 (601)
++|||-.+|+... .+ .....+..+++-|+ .+.+++.
T Consensus 296 ~kiWd~~~Gk~~a-----------si-Ept~~lND~C~~p~--sGm~f~A 331 (703)
T KOG2321|consen 296 LKIWDECTGKPMA-----------SI-EPTSDLNDFCFVPG--SGMFFTA 331 (703)
T ss_pred hhhcccccCCcee-----------ec-cccCCcCceeeecC--CceEEEe
Confidence 9999999987422 12 22345888888887 4444444
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=5.1e-12 Score=121.10 Aligned_cols=307 Identities=18% Similarity=0.199 Sum_probs=188.4
Q ss_pred EEEEcCC----CcEEEeeC--Cccchh--hhccccccceEEEEEeCCCCEEEEEee----CCeEEEEEeccCcCCCCCCC
Q 007489 51 LVSADST----GSVQFWDS--RHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGS----DGQVILYKASCESIGPNDGL 118 (601)
Q Consensus 51 l~s~~~d----g~i~vwd~--~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~----dg~i~vw~~~~~~~~~~~~~ 118 (601)
++.|+.. +.|.+|++ .++++. ..+. -......++++|++++|++... ++.|..|++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------- 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------- 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-------
Confidence 4455544 67888877 444432 2222 3445677999999999998876 5789999988741
Q ss_pred CCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec-CCCeEEEE
Q 007489 119 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAY 197 (601)
Q Consensus 119 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~ 197 (601)
.....+............++++ |+++ +|+++. .+|.|.++
T Consensus 74 ------g~L~~~~~~~~~g~~p~~i~~~---------~~g~------------------------~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 74 ------GTLTLLNSVPSGGSSPCHIAVD---------PDGR------------------------FLYVANYGGGSVSVF 114 (345)
T ss_dssp ------TEEEEEEEEEESSSCEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEE
T ss_pred ------ceeEEeeeeccCCCCcEEEEEe---------cCCC------------------------EEEEEEccCCeEEEE
Confidence 0122233333234455677776 7876 666665 57799999
Q ss_pred eccccCCcCCC-------ccCCCCCccceeeeeccccCCCeEEEEEeC---CeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 198 CANEFTKFSPH-------EICPAPQRVPIHLVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 198 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
++.....+... ...+.+.+........+.++|++++++..+ ..|.+|+++..... ....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----------l~~~ 183 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-----------LTPV 183 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-----------EEEE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-----------EEEe
Confidence 98763322111 011222233334556778999988766643 67778877654421 1124
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEEeee-cCCc---CccceeEEEEccCCCeEEE
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKR-QLPR---KLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~---~~~~v~~i~~s~d~~~l~~ 341 (601)
..+..+.....+.++|+|+++++.+ . .+++|.+|++.... + .+-.+... .++. .......|+++|||++|++
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-G-SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-T-EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-C-ceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 4556666788999999999998877 3 67889999998422 2 11112211 1211 1225789999999999888
Q ss_pred Eec-CCcEEEEEcC--CCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEc--CCceEEE
Q 007489 342 AGH-DRRIYVVDVS--SSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQHW 413 (601)
Q Consensus 342 ~~~-dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~--~~~~~~~ 413 (601)
+.. .+.|.+|++. +++ .+..+.. .......++++|+|++|+++. .++.|.+|++ +++....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~-----------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPT-----------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEE-----------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeC-----------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 775 5789999993 333 2333332 344588999999999999877 5678999977 4666544
Q ss_pred EeeccCCCceeEEEe
Q 007489 414 FISRLEGASVTAAGF 428 (601)
Q Consensus 414 ~~~~~~~~~v~~l~~ 428 (601)
.-.......+.||.|
T Consensus 331 ~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 331 VGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEESSSEEEEEE
T ss_pred ecccccCCCCEEEeC
Confidence 433233346777766
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-12 Score=119.23 Aligned_cols=319 Identities=11% Similarity=0.135 Sum_probs=194.3
Q ss_pred eEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEE-----ee-----CCeEEEEEe
Q 007489 38 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST-----GS-----DGQVILYKA 107 (601)
Q Consensus 38 ~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~-----dg~i~vw~~ 107 (601)
..+...++|++|++.+.+.+..++|++..++..+.+... ..+.++.|+|-|++|.+- -. ...+.+|++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 336777889999888888888999999988864333332 288999999999988753 11 245779998
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
.++.. ...+..-...-++..|+ +|. .+++
T Consensus 113 et~~~-----------------~s~~q~k~Q~~W~~qfs---------~dE-------------------------sl~a 141 (566)
T KOG2315|consen 113 ETGVQ-----------------RSQIQKKMQNGWVPQFS---------IDE-------------------------SLAA 141 (566)
T ss_pred cccee-----------------hhheehhhhcCcccccc---------cch-------------------------hhhh
Confidence 88442 11111111111345554 554 3333
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC--eEEEEEe-------CCeeEEeeccccCCcccCCCC
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT--SLLLVQY-------SCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~-------~~~i~i~~~~~~~~~~~~~~~ 258 (601)
--..+.+.+|++..+...... -....+....++|. ...++.. .+.++||.+.......
T Consensus 142 rlv~nev~f~~~~~f~~~~~k--------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~----- 208 (566)
T KOG2315|consen 142 RLVSNEVQFYDLGSFKTIQHK--------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ----- 208 (566)
T ss_pred hhhcceEEEEecCCccceeee--------eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-----
Confidence 344457888887764322111 01133444455554 2233331 2678888877332221
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--Ec--C-------CccEEEEeecCCCCcceEEEeeecCCcCccce
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SD--H-------VKPSLFELKKGKVGQGEWIINKRQLPRKLQFA 327 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~--~-------~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 327 (601)
......+.. ..=..+.|++-|.-|.+ +. | |.-.+|-+... +.... ..+ ...++|
T Consensus 209 -----~~a~ksFFk---adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~-----V~L-~k~GPV 273 (566)
T KOG2315|consen 209 -----PVANKSFFK---ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVS-----VPL-LKEGPV 273 (566)
T ss_pred -----hhhhccccc---cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEE-----Eec-CCCCCc
Confidence 000011110 11223456655543222 21 1 22333333331 12222 112 226799
Q ss_pred eEEEEccCCCeEEEE--ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec---CCeEE
Q 007489 328 HSMIFSYDSSQLIIA--GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVY 402 (601)
Q Consensus 328 ~~i~~s~d~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~---dg~i~ 402 (601)
.++.|+|+++.++++ -.-..+.|||++ ++++..|. .++-+++-|+|.|++|+.++- -|.|-
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-------------egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-------------EGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-------------CCCccceEECCCCCEEEEeecCCCCCceE
Confidence 999999999876554 446789999987 77877774 456788999999999987764 58899
Q ss_pred EEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeC------CCeEEEEEcCCCCc
Q 007489 403 IFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 455 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~------dg~v~vwd~~~~~~ 455 (601)
|||+.+.+++..+. ...-+-+.|+| ||++++|++. |+.++||+.....+
T Consensus 340 vwDv~n~K~i~~~~---a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFK---AANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEeccchhhccccc---cCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 99999987754443 33456789999 9999999974 78899999988754
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.1e-13 Score=133.17 Aligned_cols=235 Identities=11% Similarity=0.099 Sum_probs=148.9
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee---CCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 134 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (601)
..|.+||.... ..+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++. ..+.
T Consensus 179 ~~l~~~d~dg~-~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------------------~~l~ 239 (429)
T PRK03629 179 YELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------------RQVA 239 (429)
T ss_pred eeEEEEcCCCC-CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------------------EEcc
Confidence 47999998743 34445556778999999999999886542 45789999987652 1222
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE-EecCCC--eEEEEeccccCCcCCCccC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-SAGDDT--KLFAYCANEFTKFSPHEIC 211 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~--~v~~~~~~~~~~~~~~~~~ 211 (601)
.....+.+.+|+ |||+ .|+ +...++ .|++||+.+..
T Consensus 240 ~~~~~~~~~~~S---------PDG~------------------------~La~~~~~~g~~~I~~~d~~tg~-------- 278 (429)
T PRK03629 240 SFPRHNGAPAFS---------PDGS------------------------KLAFALSKTGSLNLYVMDLASGQ-------- 278 (429)
T ss_pred CCCCCcCCeEEC---------CCCC------------------------EEEEEEcCCCCcEEEEEECCCCC--------
Confidence 222334467787 8887 554 334444 57777765411
Q ss_pred CCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 007489 212 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 291 (601)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 291 (601)
+.++. .+...+....|+|||+.|+
T Consensus 279 -------------------------------------------------------~~~lt-~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 279 -------------------------------------------------------IRQVT-DGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred -------------------------------------------------------EEEcc-CCCCCcCceEECCCCCEEE
Confidence 00110 1123456788999999887
Q ss_pred E-Ec-CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---CcEEEEEcCCCceeeeeccCc
Q 007489 292 Y-SD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSELLHTFTPCR 366 (601)
Q Consensus 292 ~-~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~ 366 (601)
. +. ++...+|.++... + .. ..+...........|+|||++|+..+.+ ..|.+||+.+++.. .+..
T Consensus 303 f~s~~~g~~~Iy~~d~~~-g-~~-----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-- 372 (429)
T PRK03629 303 YTSDQAGRPQVYKVNING-G-AP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-- 372 (429)
T ss_pred EEeCCCCCceEEEEECCC-C-Ce-----EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--
Confidence 7 43 3556777665421 2 11 1111122234578899999999887654 35888999877643 3332
Q ss_pred ccccccCCCCCCCeeEEEEccCCCEEEEEecCCe---EEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 367 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD---VYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 367 ~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
. .......|||||++|+.++.++. +.++++++... ..+.. +...+...+|+|
T Consensus 373 ---------~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 373 ---------T-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPA-TDGQVKFPAWSP 427 (429)
T ss_pred ---------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EECcc-CCCCcCCcccCC
Confidence 1 12345789999999999887764 77788865544 34554 345788889987
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.7e-12 Score=121.04 Aligned_cols=323 Identities=14% Similarity=0.125 Sum_probs=204.8
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEE-----cC-----CCcEEEeeCCccch
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-----DS-----TGSVQFWDSRHGTL 70 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~-----~~-----dg~i~vwd~~~~~~ 70 (601)
+.+.+.+..++|++..++..+.+.. -. .++++.|+|-| +|.+= .. .-.+++|+++++..
T Consensus 48 lfA~~~~~~v~i~~~~~~~~~lt~~---------~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~ 117 (566)
T KOG2315|consen 48 LFAYSDNQVVKVFEIATLKVVLCVE---------LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQ 117 (566)
T ss_pred EEEEEcCCeEEEEEccCCcEEEEec---------cc-eeeeeeecccccccccccccccccCCCCCCCceeeeeecccee
Confidence 4455667789999988876555544 22 79999999999 55431 11 23588999999766
Q ss_pred hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 71 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
...+..-...-+++.|++|..+.+ =-..+.+.+|++.+.. ......|...+..++++
T Consensus 118 ~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~------------------~~~~kl~~~~i~~f~lS---- 174 (566)
T KOG2315|consen 118 RSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFK------------------TIQHKLSVSGITMLSLS---- 174 (566)
T ss_pred hhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcc------------------ceeeeeeccceeeEEec----
Confidence 665553222227999999876443 2224679999988744 23344567788888887
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEE-----EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecc
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-----SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 225 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (601)
|.+. ...++ +.|.-+.|++|.................. ..-..+
T Consensus 175 -----pgp~----------------------~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk----adkvqm 223 (566)
T KOG2315|consen 175 -----PGPE----------------------PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK----ADKVQM 223 (566)
T ss_pred -----CCCC----------------------CceEEEEccCCCCCCcEEEEeccccccccchhhhccccc----cceeEE
Confidence 4432 01222 24555588998876322111111101111 111133
Q ss_pred ccCCCeE--EEE-EeC---------CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 007489 226 IFSHTSL--LLV-QYS---------CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 226 ~~~~~~~--~l~-~~~---------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~- 292 (601)
.|++.|. +++ +.+ |.-.++-+.+.. .-..+.....++|.++.|+|+|+.+++
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g---------------~s~~V~L~k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG---------------ESVSVPLLKEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecC---------------ceEEEecCCCCCceEEEECCCCCEEEEE
Confidence 4555433 222 221 334444444332 123445556799999999999987776
Q ss_pred -E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---CcEEEEEcCCCceeeeeccCcc
Q 007489 293 -S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 293 -~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~ 367 (601)
| .-.++.+|+++. ..+++ + ..++-+++-|+|.|++|+.++-+ |.|.|||+.+.+++..+..
T Consensus 289 yGfMPAkvtifnlr~----~~v~d-----f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--- 354 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLRG----KPVFD-----F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--- 354 (566)
T ss_pred EecccceEEEEcCCC----CEeEe-----C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---
Confidence 4 567899999984 33321 1 23455889999999999888764 8899999998888887765
Q ss_pred cccccCCCCCCCeeEEEEccCCCEEEEEec------CCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 368 EHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l~~spd~~~las~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
..-+-+.|+|||+++++++. |+.++||+..+...... .+. +....+.|-|
T Consensus 355 ----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~--~f~-sEL~qv~W~P 410 (566)
T KOG2315|consen 355 ----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK--MFK-SELLQVEWRP 410 (566)
T ss_pred ----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh--hhh-HhHhheeeee
Confidence 23566899999999998864 67799999887665322 122 2477788887
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1e-12 Score=129.56 Aligned_cols=171 Identities=17% Similarity=0.203 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCEEEEE--cCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-C--cEEE
Q 007489 278 IICSTISNSGMLFAYS--DHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-R--RIYV 350 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~--~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g--~i~v 350 (601)
....+|||||+.|+.. .++ .|++|++.. +. + ..+..+...+....|+|||+.|+..+.+ + .|++
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---g~-~-----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQ-I-----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---CC-E-----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 3457899999988863 344 466667654 22 1 1222233456788999999998877764 4 4555
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+|+.+++.. .+.. .........|||||++|+..+.+ ..|.+||+++++.. .+... .......
T Consensus 316 ~d~~~g~~~-~lt~-----------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~ 380 (429)
T PRK03629 316 VNINGGAPQ-RITW-----------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPS 380 (429)
T ss_pred EECCCCCeE-Eeec-----------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCce
Confidence 576665443 3332 33345678999999999876543 35889999888754 33322 2334678
Q ss_pred ecCCCCCEEEEEeCCCe---EEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 428 FPPQNNNVLIITTSSNQ---VYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~---v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
|+| |+++|+.++.++. +.+++++.+. ...+.+|.+.+...+|+|-
T Consensus 381 ~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~------------~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 381 IAP-NGTMVIYSSSQGMGSVLNLVSTDGRF------------KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ECC-CCCEEEEEEcCCCceEEEEEECCCCC------------eEECccCCCCcCCcccCCC
Confidence 999 9999999988764 7778886654 2345567788889999883
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=3.4e-14 Score=131.14 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=126.6
Q ss_pred CCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCC------
Q 007489 285 NSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSS------ 356 (601)
Q Consensus 285 ~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~------ 356 (601)
|.+--+.+ -..|.+.+.+... ..-.+++. ....-....++++.|-|.+ ..++++-.+|.+++||..-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfn---e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFN---EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCcceEEeeccCceEEecchh-hHHHHhhh---hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 44544444 4677788777654 11111111 1111123689999999944 45667788999999976311
Q ss_pred --------ceeeeeccCcc---cccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 357 --------ELLHTFTPCRE---EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 357 --------~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
........... .+..........|+..+|||||++||+.+.||.++|||.++.+.+..++.+- +...+
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLLC 337 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLLC 337 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceEE
Confidence 01111110000 0000011134578999999999999999999999999999999877766665 47899
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCC
Q 007489 426 AGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 484 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p 484 (601)
++||| |+++|++|++|--|.||.+..+++.. .-.+|+.+|..|+|+|
T Consensus 338 vcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA-----------RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA-----------RGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcC-CccEEEecCCcceEEEEEeccceEEE-----------eccccccceeeEeecc
Confidence 99999 99999999999999999999988643 4568999999999994
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1.2e-11 Score=107.29 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=125.4
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-c
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-H 344 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~ 344 (601)
.+.++... ..|.++.+++ ..|++-..+.|++|.... +.+.+..+..... .....+++-+.+..+||.-+ .
T Consensus 87 ~i~el~f~--~~I~~V~l~r--~riVvvl~~~I~VytF~~--n~k~l~~~et~~N---PkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 87 CIIELSFN--SEIKAVKLRR--DRIVVVLENKIYVYTFPD--NPKLLHVIETRSN---PKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred EEEEEEec--cceeeEEEcC--CeEEEEecCeEEEEEcCC--ChhheeeeecccC---CCceEeecCCCCceEEEcCCCc
Confidence 45555443 7788888876 456777788999999874 3334332332221 22345554444555565543 3
Q ss_pred CCcEEEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe-EEEEEcCCceEEEEeecc-CC
Q 007489 345 DRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD-VYIFNLEIQRQHWFISRL-EG 420 (601)
Q Consensus 345 dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~-i~iwd~~~~~~~~~~~~~-~~ 420 (601)
-|.|+|-|+...+. -..+.. |...|.|++.+-+|.++|++|..|+ |+|||..++..+..+.+. ..
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~A-----------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINA-----------HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEc-----------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence 59999999976554 245555 9999999999999999999999998 799999999998887654 23
Q ss_pred CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
..|.+|+||| +..+|++++.-|+|+||.+.....
T Consensus 227 A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 227 ADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred heEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCC
Confidence 6899999999 999999999999999999987543
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.4e-13 Score=132.91 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCEEEE--EcCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCc--EEE
Q 007489 278 IICSTISNSGMLFAY--SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRR--IYV 350 (601)
Q Consensus 278 i~~~~~s~~g~~l~~--~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~--i~v 350 (601)
..+.+|+|||+.|+. +.++ .|++|++.. +. . ..+..+.......+|+|||++|+..+. +|. |++
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---g~-~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS---RQ-L-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCC---CC-e-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 346789999988765 3444 466777654 22 1 122333334467899999999887764 444 777
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC---eEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+|+.+++... +.. +......++|||||++|+..+.++ .|.+||+.+++.. .+. ++.......
T Consensus 321 ~dl~~g~~~~-lt~-----------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~ 385 (433)
T PRK04922 321 VAASGGSAER-LTF-----------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPS 385 (433)
T ss_pred EECCCCCeEE-eec-----------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCce
Confidence 7776665432 222 223345689999999998765443 6999999888765 332 222455679
Q ss_pred ecCCCCCEEEEEeCC---CeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCC
Q 007489 428 FPPQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP 484 (601)
Q Consensus 428 ~~p~~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p 484 (601)
|+| |+++|+..+.+ +.|+++++..+.. ..+..+.+.+..++|+|
T Consensus 386 ~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~~------------~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 386 FAP-NGSMVLYATREGGRGVLAAVSTDGRVR------------QRLVSADGEVREPAWSP 432 (433)
T ss_pred ECC-CCCEEEEEEecCCceEEEEEECCCCce------------EEcccCCCCCCCCccCC
Confidence 999 99988877653 4688888866532 23334456677778876
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3e-12 Score=112.71 Aligned_cols=298 Identities=14% Similarity=0.123 Sum_probs=183.7
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
+..+..++|++.-..++++..|-.|++|+-..... .........+|.+++|- |.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-----------------t~Lks~sQrnvtclawR---------Pl 151 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-----------------TKLKSVSQRNVTCLAWR---------PL 151 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-----------------ceecchhhcceeEEEec---------cC
Confidence 45778899998666788999999999999776332 11122336789999998 66
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
+. ..|+.|+..| |.+|.......... . + .. .+
T Consensus 152 sa-----------------------selavgCr~g-IciW~~s~tln~~r-~------------~---------~~--~s 183 (445)
T KOG2139|consen 152 SA-----------------------SELAVGCRAG-ICIWSDSRTLNANR-N------------I---------RM--MS 183 (445)
T ss_pred Cc-----------------------ceeeeeecce-eEEEEcCccccccc-c------------c---------cc--cc
Confidence 54 3666666554 67776543110000 0 0 00 00
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEE
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
.. ...-+..++...|+++.|.+||..++++ .+..|.|||.++ +.++
T Consensus 184 ~~--------------------------~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt---g~~~--- 231 (445)
T KOG2139|consen 184 TH--------------------------HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT---GQKI--- 231 (445)
T ss_pred cc--------------------------chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC---CCcc---
Confidence 00 1112233445789999999999999883 778899999987 3332
Q ss_pred eeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC-CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
.-.....+.++-+.||||+.+|++++-|+..++|+.. +....+-.. ..+.|...+|+|+|++|..
T Consensus 232 --pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l------------gsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 232 --PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL------------GSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred --cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec------------cCCceeeeeecCCCCEEEE
Confidence 1112345678899999999999999999999999653 333322222 3458999999999998765
Q ss_pred EecCCeEEEEEcCC------------ceEEEEee-----------ccCCCceeEEEecCCCCCEEEEEeCCCe-------
Q 007489 395 VNCFGDVYIFNLEI------------QRQHWFIS-----------RLEGASVTAAGFPPQNNNVLIITTSSNQ------- 444 (601)
Q Consensus 395 ~~~dg~i~iwd~~~------------~~~~~~~~-----------~~~~~~v~~l~~~p~~~~~l~~~~~dg~------- 444 (601)
... |.-++|.+.- .+.+..+. ..-++++.+|+|.| .|.+||+....+.
T Consensus 298 ~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 298 ACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhh
Confidence 443 2234555421 01111110 11136789999999 9999999865432
Q ss_pred -EEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCE--EEEEcCceEEEEeCC
Q 007489 445 -VYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSS--VIIYSARAMCVIDFG 505 (601)
Q Consensus 445 -v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~--~~~~~~~~~~~~~~~ 505 (601)
|.+||....-....+ +..+.+ .....-|.|+|..++.+ .+.|+...++.+++.
T Consensus 376 ~i~~fdtr~sp~vels-------~cg~i~-ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 376 HISRFDTRKSPPVELS-------YCGMIG-GEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhcccccCceEEE-------eccccc-CCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 555665543221110 111111 12356677777633333 346777778877764
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.4e-12 Score=116.14 Aligned_cols=224 Identities=13% Similarity=0.177 Sum_probs=162.2
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE-EE-EcC--C
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF-AY-SDH--V 296 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~-~~~--~ 296 (601)
.+..+.....-.+++..+|.+.+|........ ...+..+... ..+..+.-++....| |+ |.. .
T Consensus 107 ~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~h-----------ss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 107 SIKGLKLADGTLITCVSSGNLQVRHDKSGDLH-----------SSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred cccchhhcCCEEEEEecCCcEEEEeccCCccc-----------cccceeeecC--CceeeeccCCCCCceEecCchhccc
Confidence 34444444444566667799999998754411 1133333333 455566656655444 44 455 7
Q ss_pred ccEEEEeecCCCCcceEEEeeecCCc----CccceeEEEEccC--CCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccc
Q 007489 297 KPSLFELKKGKVGQGEWIINKRQLPR----KLQFAHSMIFSYD--SSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEH 369 (601)
Q Consensus 297 ~v~l~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~s~d--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~ 369 (601)
.+++||+.. ..++|......... -.-+++.+.|-+. ...||+++.-+.+++||...+ +++..|.-
T Consensus 174 ~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~----- 245 (412)
T KOG3881|consen 174 ELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF----- 245 (412)
T ss_pred ceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-----
Confidence 899999986 57777654322111 1126788899887 789999999999999999755 47778876
Q ss_pred cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE-eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 370 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
...+|+++...|++++|++|..-|.+..||+.+++.... +... .+.|+++..+| ...+|++++-|..|+|+
T Consensus 246 ------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp-~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 246 ------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHP-THPVLASCGLDRYVRIH 317 (412)
T ss_pred ------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcC-CCceEEeeccceeEEEe
Confidence 678899999999999999999999999999999998655 4433 36899999999 98999999999999999
Q ss_pred EcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 449 DVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 449 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
|+++.++ +.+.|. ...++.|.+.++
T Consensus 318 D~ktrkl----------l~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 318 DIKTRKL----------LHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred ecccchh----------hhhhhh--hccccEEEecCC
Confidence 9999765 222222 346777777665
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=9.4e-13 Score=130.02 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=146.7
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---CeEEEEEeccCcCCCCCCCCCccccceeEEecCcc
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 134 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (601)
..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++. ..+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~------------------~~l~ 236 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR------------------RVVA 236 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE------------------EEee
Confidence 467888875 55555666778899999999999999876643 4599999988752 2222
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP 214 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~ 214 (601)
.....+.+.+|+ |||+ .++++.+.++...+|.+.....
T Consensus 237 ~~~g~~~~~~~S---------PDG~-----------------------~la~~~~~~g~~~Iy~~d~~~~---------- 274 (427)
T PRK02889 237 NFKGSNSAPAWS---------PDGR-----------------------TLAVALSRDGNSQIYTVNADGS---------- 274 (427)
T ss_pred cCCCCccceEEC---------CCCC-----------------------EEEEEEccCCCceEEEEECCCC----------
Confidence 223345577787 8886 2334566677544444321000
Q ss_pred CccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E
Q 007489 215 QRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S 293 (601)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~ 293 (601)
.+.++ ..+........|+|||+.|+. +
T Consensus 275 ---------------------------------------------------~~~~l-t~~~~~~~~~~wSpDG~~l~f~s 302 (427)
T PRK02889 275 ---------------------------------------------------GLRRL-TQSSGIDTEPFFSPDGRSIYFTS 302 (427)
T ss_pred ---------------------------------------------------CcEEC-CCCCCCCcCeEEcCCCCEEEEEe
Confidence 00000 011123445679999998887 4
Q ss_pred -cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC---cEEEEEcCCCceeeeeccCcccc
Q 007489 294 -DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR---RIYVVDVSSSELLHTFTPCREEH 369 (601)
Q Consensus 294 -~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~ 369 (601)
..+...+|.++....... .....+ ......+|+|||++|+..+.++ .|.+||+.+++.. .+..
T Consensus 303 ~~~g~~~Iy~~~~~~g~~~-----~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~----- 369 (427)
T PRK02889 303 DRGGAPQIYRMPASGGAAQ-----RVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD----- 369 (427)
T ss_pred cCCCCcEEEEEECCCCceE-----EEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-----
Confidence 346778888764211111 111122 2234578999999998877654 5999999877653 3332
Q ss_pred cccCCCCCCCeeEEEEccCCCEEEEEecCC---eEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 370 DREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
. .......|+|||++|+.++.++ .+.+.++++ .....+.. +.+.+...+|+|
T Consensus 370 ------~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~-~~g~~~~p~wsp 424 (427)
T PRK02889 370 ------T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSV-QGGDVREPSWGP 424 (427)
T ss_pred ------C-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeec-CCCCCCCCccCC
Confidence 1 2235679999999998776543 366666744 33334443 334677788887
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=7e-13 Score=117.94 Aligned_cols=274 Identities=12% Similarity=0.064 Sum_probs=180.1
Q ss_pred CCceEEEEEEEeeCC--eEEEEc-CCCcEEEeeCCccchhhhc------cccccceEEEEEeCCCCEEEEEeeCCeEEEE
Q 007489 35 GPELCIWSLLSLRCG--TLVSAD-STGSVQFWDSRHGTLLQAH------SFHKGDVNALAAAPSHNRVFSTGSDGQVILY 105 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~-~dg~i~vwd~~~~~~~~~~------~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 105 (601)
.....|.+++|-.++ .++.+. .+-.+.........+...+ ....++|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 345678889998777 444444 6667777777665544432 3456677777664 4568888889999999
Q ss_pred EeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEE
Q 007489 106 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 185 (601)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (601)
....+...... +..+.. ...+..+.-+ +.. ..++
T Consensus 131 ~~k~~d~hss~-------------l~~la~-g~g~~~~r~~---------~~~-----------------------p~Iv 164 (412)
T KOG3881|consen 131 HDKSGDLHSSK-------------LIKLAT-GPGLYDVRQT---------DTD-----------------------PYIV 164 (412)
T ss_pred eccCCcccccc-------------ceeeec-CCceeeeccC---------CCC-----------------------CceE
Confidence 98865421000 011111 1222222211 221 1377
Q ss_pred EEecCC--CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 186 ISAGDD--TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 186 ~s~~~d--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
++||.. ..+.+||+++.++ ||........
T Consensus 165 a~GGke~~n~lkiwdle~~~q--------------------------------------iw~aKNvpnD----------- 195 (412)
T KOG3881|consen 165 ATGGKENINELKIWDLEQSKQ--------------------------------------IWSAKNVPND----------- 195 (412)
T ss_pred ecCchhcccceeeeeccccee--------------------------------------eeeccCCCCc-----------
Confidence 779999 7999999986321 2211110000
Q ss_pred cceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEE
Q 007489 264 TSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI 340 (601)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~ 340 (601)
...+. -.-.++++.|-+. ...||+ ...+.+++||.+. +...+ ..+.....+++++...|++++++
T Consensus 196 ---~L~Lr--VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--qRRPV-----~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 196 ---RLGLR--VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--QRRPV-----AQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred ---cccce--eeeeeccceecCCCCCceEEEEecceeEEEecCcc--cCcce-----eEeccccCcceeeeecCCCcEEE
Confidence 00000 1133556666665 556666 6889999999986 22222 23344466899999999999999
Q ss_pred EEecCCcEEEEEcCCCceeee-eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC
Q 007489 341 IAGHDRRIYVVDVSSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE 419 (601)
Q Consensus 341 ~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~ 419 (601)
+|...|.+..||++.+++... +.+ ..+.|.+|..+|.+++||+++.|..|+|+|+++.+.... .+-
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg-----------~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k--vYv 330 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKG-----------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK--VYV 330 (412)
T ss_pred EecccchhheecccCceeeccccCC-----------ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh--hhh
Confidence 999999999999999987766 666 789999999999999999999999999999999665322 223
Q ss_pred CCceeEEEecC
Q 007489 420 GASVTAAGFPP 430 (601)
Q Consensus 420 ~~~v~~l~~~p 430 (601)
.+.++.+-+.+
T Consensus 331 Ks~lt~il~~~ 341 (412)
T KOG3881|consen 331 KSRLTFILLRD 341 (412)
T ss_pred hccccEEEecC
Confidence 35677777765
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.8e-12 Score=127.98 Aligned_cols=175 Identities=18% Similarity=0.238 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEE
Q 007489 276 RKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd 352 (601)
..+.+.+|+|||+.|+. +.++...||.++.. +... ..+..+........|+|||++|+..+. +|...+|.
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--~~~~-----~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--GSGL-----RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECC--CCCc-----EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence 34557889999998875 46777888887652 2222 223333334566789999999887664 45556665
Q ss_pred c--CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC---eEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 353 V--SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 353 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+ .+++... +.. ........+|||||++|+..+.++ .|.+||+.+++... +.. +.......
T Consensus 313 ~~~~~g~~~~-lt~-----------~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~ 377 (427)
T PRK02889 313 MPASGGAAQR-VTF-----------TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPS 377 (427)
T ss_pred EECCCCceEE-Eec-----------CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCce
Confidence 4 4444322 221 222334678999999999877554 69999999887643 222 22346789
Q ss_pred ecCCCCCEEEEEeCCC---eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 428 FPPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
|+| |++.|+.++.++ .+++.++.... ...+..+.+.+...+|+|-
T Consensus 378 ~sp-dg~~l~~~~~~~g~~~l~~~~~~g~~------------~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 378 FAP-NGRYILYATQQGGRSVLAAVSSDGRI------------KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECC-CCCEEEEEEecCCCEEEEEEECCCCc------------eEEeecCCCCCCCCccCCC
Confidence 999 999988887554 46666664322 2233345566777888874
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=6.9e-12 Score=115.58 Aligned_cols=320 Identities=14% Similarity=0.159 Sum_probs=196.4
Q ss_pred CCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCC--------------
Q 007489 35 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-------------- 100 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-------------- 100 (601)
...-++..++|||.|+++....-..|.+|....+..+.++. ...|..+.|+|.+++|.+-+..+
T Consensus 30 ~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 30 SENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred ccCcchhheeecCcchheehhhccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 35678899999999944444444569999988877666665 35899999999999999876443
Q ss_pred -eEEEEEeccCcCCCCCCCCCccccceeEEecCccccccc--ee-EEEeeccccCCCCCCcccccccCCCCccccccccc
Q 007489 101 -QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD--VR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK 176 (601)
Q Consensus 101 -~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 176 (601)
.+.+||..++.. +..+...... .+ -+.|+ .+++
T Consensus 108 n~~~vwd~~sg~i-----------------v~sf~~~~q~~~~Wp~~k~s---------~~D~----------------- 144 (561)
T COG5354 108 NNVFVWDIASGMI-----------------VFSFNGISQPYLGWPVLKFS---------IDDK----------------- 144 (561)
T ss_pred CceeEEeccCcee-----------------EeeccccCCcccccceeeee---------ecch-----------------
Confidence 489999988874 3333322222 22 33343 3332
Q ss_pred cccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC--eEEEEEe-------CCeeEEeecc
Q 007489 177 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT--SLLLVQY-------SCRLDILSVR 247 (601)
Q Consensus 177 ~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~-------~~~i~i~~~~ 247 (601)
+++-- ....+.++++.. .+..+...... ...+....++|. +..++.. ...+++|.+.
T Consensus 145 -------y~ARv-v~~sl~i~e~t~--n~~~~p~~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 145 -------YVARV-VGSSLYIHEITD--NIEEHPFKNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred -------hhhhh-ccCeEEEEecCC--ccccCchhhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 22111 234677777521 11111111111 134445555654 2233322 2577788776
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-----------cCCccEEEEeecCCCCcceEEE
Q 007489 248 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-----------DHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-----------~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
... .+.+...- ...-..+.|.+.|+++++ . ....++|+++.. ....
T Consensus 211 ~~s---------------~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~---- 268 (561)
T COG5354 211 KNS---------------VLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIP---- 268 (561)
T ss_pred CCC---------------eeeeeeeE-eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccc----
Confidence 332 11111111 122345678888887765 1 123455666653 1111
Q ss_pred eeecCCcCccceeEEEEccCCCeEEEEe--cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSSQLIIAG--HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
.. ....++|...+|.|.++.+++.+ .+..+.++|+.. .+...+. ...-+.+.|||.++|++
T Consensus 269 --V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~-Nl~~~~P-------------e~~rNT~~fsp~~r~il 331 (561)
T COG5354 269 --VE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG-NLRFYFP-------------EQKRNTIFFSPHERYIL 331 (561)
T ss_pred --ee-ccccccceeeeecccCCceeEEecccccceeeccccc-ceEEecC-------------CcccccccccCcccEEE
Confidence 11 13466999999999999887766 577899999874 4554443 23445688999999999
Q ss_pred EEecC---CeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe------CCCeEEEEEcCCCCc
Q 007489 394 AVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT------SSNQVYVFDVEAKQL 455 (601)
Q Consensus 394 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~------~dg~v~vwd~~~~~~ 455 (601)
.++-| |.|.+||..+..... ..+.+...+-+.|+| |++++.+.. .|+.|.|||+.....
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~--~~~~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVA--GAFNGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EecCCccccceEEeccCCceEEE--EEeecCCceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence 87654 789999988766542 223344556678999 999988875 378999999987653
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.4e-12 Score=126.75 Aligned_cols=156 Identities=14% Similarity=0.217 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CC--cEEE
Q 007489 276 RKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYV 350 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg--~i~v 350 (601)
..+.+.+|+|||+.|+. ..++...||.++.. +... ..+..+........|+|||++|+..+. +| .|++
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR--SGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECC--CCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 34567789999988765 34555445544321 1122 223333444567899999999887774 33 5888
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+|+..++.. .+.. +...+....|||||++|+..+.+ ..|.+||+.++... .+.. +..+..+.
T Consensus 319 ~d~~g~~~~-~lt~-----------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~--~~~~~~p~ 383 (435)
T PRK05137 319 MNADGSNPR-RISF-----------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS--GFLVEGPT 383 (435)
T ss_pred EECCCCCeE-Eeec-----------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC--CCCCCCCe
Confidence 888765543 3332 33456678999999999877643 36888998766543 3322 23467889
Q ss_pred ecCCCCCEEEEEeCC------CeEEEEEcCCCC
Q 007489 428 FPPQNNNVLIITTSS------NQVYVFDVEAKQ 454 (601)
Q Consensus 428 ~~p~~~~~l~~~~~d------g~v~vwd~~~~~ 454 (601)
|+| |+++|+..+.+ ..|+++|+.++.
T Consensus 384 ~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 384 WAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECC-CCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 999 99988876543 368888887765
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=3.2e-14 Score=129.01 Aligned_cols=258 Identities=12% Similarity=0.127 Sum_probs=183.3
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
.-....+.++.+|++|+.||.-|.|..+|..++.+ ...+ .-...|+.+.|. .+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-----------------~~Ei-~v~Etv~Dv~~L---------Hn 181 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-----------------HFEI-NVMETVRDVTFL---------HN 181 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee-----------------eeee-ehhhhhhhhhhh---------cc
Confidence 34557899999999999999999999999999874 1211 123456666664 22
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
. .+++......+++||-....
T Consensus 182 e-------------------------q~~AVAQK~y~yvYD~~GtE---------------------------------- 202 (545)
T KOG1272|consen 182 E-------------------------QFFAVAQKKYVYVYDNNGTE---------------------------------- 202 (545)
T ss_pred h-------------------------HHHHhhhhceEEEecCCCcE----------------------------------
Confidence 2 45555566678888755311
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
+..+. ....+..+.|-|.--+|++ +..|-++--|+.. +..+
T Consensus 203 -----------------------------lHClk--~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~---GklV---- 244 (545)
T KOG1272|consen 203 -----------------------------LHCLK--RHIRVARLEFLPYHFLLVAASEAGFLKYQDVST---GKLV---- 244 (545)
T ss_pred -----------------------------Eeehh--hcCchhhhcccchhheeeecccCCceEEEeech---hhhh----
Confidence 11111 1255677778887777777 6778888888886 4433
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
..+....+.+..+.-+|-+..+-+|...|+|.+|.-.+.+++..+.. |.++|.+|++.++|+|+|+.+
T Consensus 245 -a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc-----------H~g~V~siAv~~~G~YMaTtG 312 (545)
T KOG1272|consen 245 -ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC-----------HRGPVSSIAVDRGGRYMATTG 312 (545)
T ss_pred -HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh-----------cCCCcceEEECCCCcEEeecc
Confidence 33444456778888889888999999999999999988888777777 999999999999999999999
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE-cCCCCcccchhcccCCcCcccccCC-
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD-VEAKQLGEWSMQHTFVLPRRYQEFP- 474 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~- 474 (601)
.|..++|||+.......++... .+...++||. .+ +||.+ ....|.||. .-.+.. . .-..+..|.
T Consensus 313 ~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~Sq-kg-lLA~~-~G~~v~iw~d~~~~s~----~-----~~~pYm~H~~ 378 (545)
T KOG1272|consen 313 LDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQ-KG-LLALS-YGDHVQIWKDALKGSG----H-----GETPYMNHRC 378 (545)
T ss_pred cccceeEeeeccccccceeecC--CCcccccccc-cc-ceeee-cCCeeeeehhhhcCCC----C-----CCcchhhhcc
Confidence 9999999999988765555543 3678889986 44 45444 445699994 333211 0 011233443
Q ss_pred -CcEEEEEeCCC
Q 007489 475 -GEVIGLSFSPS 485 (601)
Q Consensus 475 -~~v~~i~~~p~ 485 (601)
+.|.++.|.|-
T Consensus 379 ~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 379 GGPVEDLRFCPY 390 (545)
T ss_pred CcccccceeccH
Confidence 68999999996
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.4e-12 Score=127.81 Aligned_cols=235 Identities=11% Similarity=0.117 Sum_probs=148.8
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee---CCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 134 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (601)
..|.+||.. |.....+..|...+.+.+|+|||+.|+..+. +..|.+|++.++.. ..+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------------------~~l~ 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------------------ELVG 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------------------EEee
Confidence 479999986 5556667778889999999999999887654 46899999988752 2333
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC--eEEEEeccccCCcCCCccCC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--KLFAYCANEFTKFSPHEICP 212 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~~~~~~~~~~~~~~~~~~ 212 (601)
.+...+.+.+|+ |||+ .++++.+.++ .|++||+.+...
T Consensus 243 ~~~g~~~~~~~S---------PDG~-----------------------~la~~~~~~g~~~Iy~~d~~~~~~-------- 282 (435)
T PRK05137 243 NFPGMTFAPRFS---------PDGR-----------------------KVVMSLSQGGNTDIYTMDLRSGTT-------- 282 (435)
T ss_pred cCCCcccCcEEC---------CCCC-----------------------EEEEEEecCCCceEEEEECCCCce--------
Confidence 445566677787 8886 2445555555 466666654110
Q ss_pred CCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE
Q 007489 213 APQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY 292 (601)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 292 (601)
.++ ..+.......+|+|||+.|+.
T Consensus 283 -------------------------------------------------------~~L-t~~~~~~~~~~~spDG~~i~f 306 (435)
T PRK05137 283 -------------------------------------------------------TRL-TDSPAIDTSPSYSPDGSQIVF 306 (435)
T ss_pred -------------------------------------------------------EEc-cCCCCccCceeEcCCCCEEEE
Confidence 000 011223456789999998887
Q ss_pred E--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---CcEEEEEcCCCceeeeeccCcc
Q 007489 293 S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 293 ~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~ 367 (601)
. .++...+|.++.. +... ..+......+....|+|||++|+..+.+ ..|.+||+..+. .+.+..
T Consensus 307 ~s~~~g~~~Iy~~d~~--g~~~-----~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~--- 375 (435)
T PRK05137 307 ESDRSGSPQLYVMNAD--GSNP-----RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS--- 375 (435)
T ss_pred EECCCCCCeEEEEECC--CCCe-----EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---
Confidence 3 3344444444331 2121 1111122345667899999999887654 358888876443 333332
Q ss_pred cccccCCCCCCCeeEEEEccCCCEEEEEecC------CeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 368 EHDREIQPSEPPITKMFTSSDGQWLAAVNCF------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l~~spd~~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
...+..+.|+|||++|+..+.+ ..+++++++++... .+.. . ..+...+|+|
T Consensus 376 ---------~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~-~-~~~~~p~Wsp 432 (435)
T PRK05137 376 ---------GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVPT-P-GDASDPAWSP 432 (435)
T ss_pred ---------CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-EccC-C-CCccCcccCC
Confidence 2246678999999998865542 36888888877653 4442 2 3467778887
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.54 E-value=1e-10 Score=107.02 Aligned_cols=201 Identities=12% Similarity=0.113 Sum_probs=134.4
Q ss_pred CCCeE-EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecC
Q 007489 228 SHTSL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG 306 (601)
Q Consensus 228 ~~~~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~ 306 (601)
+.||+ ++.+..|.|.+++-.+..-......++-..+.+ ..++..+ .......+. .+|.+++.-+.|...+.+...
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k-~~k~~~p-skyledfa~-~~Gd~ia~VSRGkaFi~~~~~- 350 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKK-QPKFVNP-SKYLEDFAV-VNGDYIALVSRGKAFIMRPWD- 350 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccc-cccccCH-HHhhhhhcc-CCCcEEEEEecCcEEEECCCC-
Confidence 34555 556677999999877655332111111110000 0000000 000111111 257888887777777765542
Q ss_pred CCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC-cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEE
Q 007489 307 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT 385 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 385 (601)
+-. .. .++...|.-..+..+++-++.|..|| .+-|||..+++.. .+.. .-+.|.++..
T Consensus 351 --~~~------iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~-----------~lg~I~av~v 409 (668)
T COG4946 351 --GYS------IQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEK-----------DLGNIEAVKV 409 (668)
T ss_pred --Cee------EE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeC-----------CccceEEEEE
Confidence 111 11 23455688888888888899999998 8999999877654 4444 5678999999
Q ss_pred ccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCC----eEEEEEcCCCCc
Q 007489 386 SSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN----QVYVFDVEAKQL 455 (601)
Q Consensus 386 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg----~v~vwd~~~~~~ 455 (601)
+|||++++.+.....|.++|+++++... +....-+-|+.++||| +++++|-+--+| .|++||+.+++.
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999999999999999998753 3333336799999999 999999987765 699999999874
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=5.3e-13 Score=116.58 Aligned_cols=288 Identities=14% Similarity=0.138 Sum_probs=168.5
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc-----hhhhccccc------------cceEEEEEeCCCC--EEEE
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-----LLQAHSFHK------------GDVNALAAAPSHN--RVFS 95 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~~~~--~l~s 95 (601)
....|.+|.|..+| +|++|+.+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 55679999999999 99999999999999653221 222333343 4688999998664 5667
Q ss_pred EeeCCeEEEEEeccCcCCCCCC-------------C-----CCccccceeEEec-CccccccceeEEEeeccccCCCCCC
Q 007489 96 TGSDGQVILYKASCESIGPNDG-------------L-----SSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 96 ~~~dg~i~vw~~~~~~~~~~~~-------------~-----~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
.+.|.+|++|.+.......... | ..-.......+.+ .-.+|+-.|.++.+. .
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N---------s 174 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN---------S 174 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec---------C
Confidence 7789999999987654322100 0 0000000011111 113566677777775 5
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC-CcCCCccCCCCCccceeeeeccccCCCeE--E
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-KFSPHEICPAPQRVPIHLVHNTIFSHTSL--L 233 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 233 (601)
|.. .++| ..|=.|.+|.++-.. .+....+.+.........+++..|+|..- +
T Consensus 175 D~E------------------------t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 175 DKE------------------------TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF 229 (433)
T ss_pred ccc------------------------eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence 543 5554 466789999887422 22222222233333445677888888533 3
Q ss_pred EEEeC-CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcce
Q 007489 234 LVQYS-CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~ 312 (601)
+.+.+ |.|++-+++...--.....+.....-..-..+...--..|..+.|+++|+++++-+--+|++||+.........
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVET 309 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceE
Confidence 33333 89999998843211100000000000000011111135688899999999999988899999999763222222
Q ss_pred EEEeee---cCCc--Ccc---ceeEEEEccCCCeEEEEecCCcEEEEEcCCCc
Q 007489 313 WIINKR---QLPR--KLQ---FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 357 (601)
Q Consensus 313 ~~~~~~---~~~~--~~~---~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~ 357 (601)
+++... .+.. ... .-..++|+.++.++++|+.....++|++..|.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 221110 0000 001 22467899999999999999999999976664
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=1.1e-12 Score=113.25 Aligned_cols=134 Identities=21% Similarity=0.268 Sum_probs=98.9
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--E-cCCccEEEEeecCCCCcceEEE
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--S-DHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~-~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
+...+|.++.... ....+.......|.+++|+|+|+.+|+ + .+..+.+|+++ +..+.
T Consensus 37 ~~~~l~~~~~~~~--------------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~-- 96 (194)
T PF08662_consen 37 GEFELFYLNEKNI--------------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIF-- 96 (194)
T ss_pred eeEEEEEEecCCC--------------ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeE--
Confidence 4567777754432 233444444567999999999988766 3 46789999996 33331
Q ss_pred eeecCCcCccceeEEEEccCCCeEEEEec---CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 392 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l 392 (601)
.+. ...++.+.|+|+|++|++++. .|.|.+||+.+.+.+.++. |. .++.++|||||++|
T Consensus 97 ---~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~------------~~-~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 97 ---SFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE------------HS-DATDVEWSPDGRYL 158 (194)
T ss_pred ---eec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc------------cC-cEEEEEEcCCCCEE
Confidence 222 346688999999999999875 4679999999888877765 33 47899999999999
Q ss_pred EEEec------CCeEEEEEcCCce
Q 007489 393 AAVNC------FGDVYIFNLEIQR 410 (601)
Q Consensus 393 as~~~------dg~i~iwd~~~~~ 410 (601)
+++.. |..++||+..+..
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEEEeccceeccccEEEEEecCeE
Confidence 98864 6779999986543
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=2.3e-10 Score=106.41 Aligned_cols=269 Identities=14% Similarity=0.083 Sum_probs=168.7
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEc---------CCCcEEEeeCCccchhhhcccc
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSAD---------STGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~---------~dg~i~vwd~~~~~~~~~~~~h 77 (601)
++|.+.|..+++.+.++..+. .... + +|||| .| ++.+ .+..|.+||..+++.+..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-------~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-------LPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-------CCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 899999999999999998632 2222 3 89999 54 4444 5789999999999988777631
Q ss_pred -------ccceEEEEEeCCCCEEEEEe-e-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecc
Q 007489 78 -------KGDVNALAAAPSHNRVFSTG-S-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 148 (601)
Q Consensus 78 -------~~~V~~l~~s~~~~~l~s~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 148 (601)
......++++|||++|+... . +..|.+.|+.+++. +..+. .
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----------------v~ei~----------v--- 146 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----------------VRMMD----------V--- 146 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----------------EEEEe----------C---
Confidence 22344789999999999776 3 68999999998764 22221 1
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec--------CCCeEEEEeccccCCcCCCccCCCCCcccee
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--------DDTKLFAYCANEFTKFSPHEICPAPQRVPIH 220 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (601)
|++. .++..+ .||......+..
T Consensus 147 -------p~~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d~------------------- 176 (352)
T TIGR02658 147 -------PDCY------------------------HIFPTANDTFFMHCRDGSLAKVGYGT------------------- 176 (352)
T ss_pred -------CCCc------------------------EEEEecCCccEEEeecCceEEEEecC-------------------
Confidence 3332 233222 233222222111
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEEEcCCccE
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYSDHVKPS 299 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~v~ 299 (601)
+|... .....+++-+.. ... ..+ .+++ +|+++.++..|+|.
T Consensus 177 ---------~g~~~---~~~~~vf~~~~~--------------------~v~--~rP----~~~~~dg~~~~vs~eG~V~ 218 (352)
T TIGR02658 177 ---------KGNPK---IKPTEVFHPEDE--------------------YLI--NHP----AYSNKSGRLVWPTYTGKIF 218 (352)
T ss_pred ---------CCceE---EeeeeeecCCcc--------------------ccc--cCC----ceEcCCCcEEEEecCCeEE
Confidence 11100 000011110000 000 011 3455 88888887779999
Q ss_pred EEEeecCCC-CcceEEEeeecCC---cCccceeEEEEccCCCeEEEEec----------CCcEEEEEcCCCceeeeeccC
Q 007489 300 LFELKKGKV-GQGEWIINKRQLP---RKLQFAHSMIFSYDSSQLIIAGH----------DRRIYVVDVSSSELLHTFTPC 365 (601)
Q Consensus 300 l~~~~~~~~-~~~~~~~~~~~~~---~~~~~v~~i~~s~d~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~ 365 (601)
+.|+..... ....|........ -......-++++++++++++... .+.|.++|..+++.+..+..
T Consensus 219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 999754111 1122222111100 01223445999999999888532 25799999999999988874
Q ss_pred cccccccCCCCCCCeeEEEEccCCC-EEEEEe-cCCeEEEEEcCCceEEEEeec
Q 007489 366 REEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~spd~~-~las~~-~dg~i~iwd~~~~~~~~~~~~ 417 (601)
...+..+++|||++ +|++.+ .++.|.++|+.+++....+..
T Consensus 298 -----------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 298 -----------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred -----------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 45789999999999 777666 678899999999998877733
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6e-11 Score=110.55 Aligned_cols=315 Identities=14% Similarity=0.215 Sum_probs=200.7
Q ss_pred EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee-----------CCeEEEEE
Q 007489 39 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-----------DGQVILYK 106 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----------dg~i~vw~ 106 (601)
.=+-+.|||-| +|+|--..| |.+|-..+...++++. |. .|.-+.|||..+||+|=+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 34668999999 777776665 8999988888888886 54 6889999999999998652 25799999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccc--cccce-eEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCC
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDV-RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 183 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (601)
+.+|.. ...+.. ....+ .-..|+ .|++
T Consensus 289 I~tG~l-----------------krsF~~~~~~~~~WP~frWS---------~DdK------------------------ 318 (698)
T KOG2314|consen 289 IATGLL-----------------KRSFPVIKSPYLKWPIFRWS---------HDDK------------------------ 318 (698)
T ss_pred ccccch-----------------hcceeccCCCccccceEEec---------cCCc------------------------
Confidence 999985 222221 11111 122344 4554
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC-------CeeEEeeccccCCcccCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-------CRLDILSVRLENNVESRS 256 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~i~i~~~~~~~~~~~~~ 256 (601)
+++.-.. ..|.+|+...+..+....+ .+..+....|+|.+.+||... ..+.+..+....
T Consensus 319 y~Arm~~-~sisIyEtpsf~lld~Ksl-------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~------ 384 (698)
T KOG2314|consen 319 YFARMTG-NSISIYETPSFMLLDKKSL-------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR------ 384 (698)
T ss_pred eeEEecc-ceEEEEecCceeeeccccc-------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc------
Confidence 6655444 5678888776554433322 124567788999988888654 233344333221
Q ss_pred CCCCCCCcceEEEEEecCCCCeE--EEEEcCCCCEEEEEcC-----------CccEEEEeecCCCCcceEEEeeecCCcC
Q 007489 257 SSGGHASTSLLVQVKSKASRKII--CSTISNSGMLFAYSDH-----------VKPSLFELKKGKVGQGEWIINKRQLPRK 323 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~l~~~~~-----------~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (601)
++....-.+|. .+-|-.+|.+|++--+ ..+.||.++. .... +....+
T Consensus 385 ------------~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--KdIp---ve~vel--- 444 (698)
T KOG2314|consen 385 ------------EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--KDIP---VEVVEL--- 444 (698)
T ss_pred ------------eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec--cCCC---ceeeec---
Confidence 22222222233 3456778888887211 1244666654 1111 111222
Q ss_pred ccceeEEEEccCCCeEEEEecC---CcEEEEEcCCC----ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE-
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV- 395 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~- 395 (601)
...|...+|-|.|..+++-+.+ .++.+|.+++. +++..|. ....+.+.|||.|++++.+
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-------------k~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-------------KKFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-------------ccccceEEEcCCCcEEEEEE
Confidence 3478899999999998776643 56889987632 2334443 2456789999999998865
Q ss_pred --ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeC------CCeEEEEEcCCCCc
Q 007489 396 --NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 455 (601)
Q Consensus 396 --~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~------dg~v~vwd~~~~~~ 455 (601)
+..|.+..+|++-.....+ ........+.+.|.| .|+++++++. |.--++|++.+..+
T Consensus 512 l~s~~g~l~F~D~~~a~~k~~-~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 512 LVSRRGDLEFYDTDYADLKDT-ASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred ecccccceEEEecchhhhhhc-cCccccccccceECC-CCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 4578999999885333211 112124678899999 9999999975 56678888887653
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=4.2e-11 Score=120.06 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=136.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEE---EEeeCC-eEEEEcCCCcEEEeeCCccchhhhccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL---LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v---~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 76 (601)
+++.++.+..+.+||...+.....+.. .......++ -++++. ++++|+.-+.|.+|++...+.-..+.+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~-------~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQS-------DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCC-------CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 467888889999999988887777752 122222222 334555 899999999999999973333336889
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
|.+.|.++.|+.||.++++.+.|.++++|++++.+.. .....+|+..|..+.|. |
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~----------------~~~~fgHsaRvw~~~~~---------~ 228 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL----------------GCTGFGHSARVWACCFL---------P 228 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeeccccccc----------------CcccccccceeEEEEec---------c
Confidence 9999999999999999999999999999999998751 13567899999999986 3
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecccc--CCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF--TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
+ .+++++.|-+.++|+.+.. +.+..|. ...++.++..++...+
T Consensus 229 n--------------------------~i~t~gedctcrvW~~~~~~l~~y~~h~---------g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 229 N--------------------------RIITVGEDCTCRVWGVNGTQLEVYDEHS---------GKGIWKIAVPIGVIIK 273 (967)
T ss_pred c--------------------------eeEEeccceEEEEEecccceehhhhhhh---------hcceeEEEEcCCceEE
Confidence 3 7999999999999965432 1222222 2456677777766666
Q ss_pred EEeC--CeeEEeeccccC
Q 007489 235 VQYS--CRLDILSVRLEN 250 (601)
Q Consensus 235 ~~~~--~~i~i~~~~~~~ 250 (601)
+++. +.+++|++....
T Consensus 274 vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EeeccCcchhhhhhhccc
Confidence 6543 889999876543
No 248
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.9e-11 Score=114.98 Aligned_cols=367 Identities=13% Similarity=0.145 Sum_probs=225.4
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC------------C-eEEEEcCCCcEEEeeCCcc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC------------G-TLVSADSTGSVQFWDSRHG 68 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~------------g-~l~s~~~dg~i~vwd~~~~ 68 (601)
||-||. +.|.+-|..+.+.++.+. -|...|+.|.|.|- . .|++++..|.|.+||...+
T Consensus 29 iAygsh-slV~VVDs~s~q~iqsie--------~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 29 IAYGSH-SLVSVVDSRSLQLIQSIE--------LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred EEEecC-ceEEEEehhhhhhhhccc--------cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 455554 489999999999999998 79999999999862 1 5788889999999999999
Q ss_pred chhhhccccccceEEEEEeC---CC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEE
Q 007489 69 TLLQAHSFHKGDVNALAAAP---SH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 144 (601)
Q Consensus 69 ~~~~~~~~h~~~V~~l~~s~---~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 144 (601)
..+..+..|..+|..++|-+ +. ..|++-..-..+.+|+..+|+. .|. .........++.
T Consensus 100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------------~Wk----~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------------FWK----YDYSHEILSCFR 162 (1062)
T ss_pred hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------------eec----cccCCcceeeee
Confidence 99999999999999999977 33 4566666678999999999874 232 222233334455
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC-------Cc---CCCcc----
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-------KF---SPHEI---- 210 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~-------~~---~~~~~---- 210 (601)
+. |-+. ..+..-+..|.+.+-+.-... .+ ..+..
T Consensus 163 ~D---------Pfd~-----------------------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 163 VD---------PFDS-----------------------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred eC---------CCCc-----------------------ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence 54 2111 133333333333333221100 00 00000
Q ss_pred ----------CC-CCCccceeeeeccccCC--CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 211 ----------CP-APQRVPIHLVHNTIFSH--TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 211 ----------~~-~~~~~~~~~~~~~~~~~--~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
.. .+..........++|+| .+.++++..+.+.++++..... +..+..+ ...
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~---------------l~vvpie-r~~ 274 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC---------------LAVVPIE-RGG 274 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce---------------eEEEEec-cCC
Confidence 00 00000111223445677 3457777889999998876542 2222222 233
Q ss_pred eEEEEEcCCC--CEEEE-EcCCccEEEEeecCCC-------------C--------------------------------
Q 007489 278 IICSTISNSG--MLFAY-SDHVKPSLFELKKGKV-------------G-------------------------------- 309 (601)
Q Consensus 278 i~~~~~s~~g--~~l~~-~~~~~v~l~~~~~~~~-------------~-------------------------------- 309 (601)
+.-+.+-|++ ..|.+ -.+|.+.+|.-..... +
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s 354 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYS 354 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhh
Confidence 3444455554 33444 4667777665543100 0
Q ss_pred ---cceEEEeeec-----------------------------------CCcCccceeEEEEc-----------cCC----
Q 007489 310 ---QGEWIINKRQ-----------------------------------LPRKLQFAHSMIFS-----------YDS---- 336 (601)
Q Consensus 310 ---~~~~~~~~~~-----------------------------------~~~~~~~v~~i~~s-----------~d~---- 336 (601)
..+|++.... ..+|..+..+.... |-+
T Consensus 355 ~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~ 434 (1062)
T KOG1912|consen 355 SGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPA 434 (1062)
T ss_pred cchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccc
Confidence 0001111000 00111111111111 111
Q ss_pred ---CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE---------EecCCeEEEE
Q 007489 337 ---SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA---------VNCFGDVYIF 404 (601)
Q Consensus 337 ---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las---------~~~dg~i~iw 404 (601)
.++|.|...|+|.++|+.++..-..|.. |...|.++.|-...+++-. +..-+.+.|-
T Consensus 435 ~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv-----------ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vt 503 (1062)
T KOG1912|consen 435 GTVPLVAVGTNSGTVDVVDVSTNAVAASFSV-----------HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVT 503 (1062)
T ss_pred eeeeeEEeecCCceEEEEEecchhhhhhhcc-----------cccceeeeeeccceeEEEeeeccccccccceeeeEEEE
Confidence 1578999999999999999998888888 9999999999766655532 2233467888
Q ss_pred EcCCceEEE--EeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 405 NLEIQRQHW--FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 405 d~~~~~~~~--~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
|+.+|.... .++....++|+.+..+. .++||+....|.-+.+||+++-.
T Consensus 504 dLrtGlsk~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 504 DLRTGLSKRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred EcccccccccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccch
Confidence 888886542 23444558999999999 99999999999999999997654
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=1.4e-11 Score=107.96 Aligned_cols=339 Identities=12% Similarity=0.181 Sum_probs=208.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEee-CCccchhhhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWD-SRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd-~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
||.+.|++...-|-. .+++.+.|.+++||- .+.++.-..+. .-..++.++.+.++...|+.|-..|++.-+.+...-
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 899999998887776 899999999999994 34455444443 235688999999999999999999999999776543
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
.. -...+....|...+..+.|+ ...+ .+++.+.|
T Consensus 102 nk-------------m~~~r~~~~h~~~v~~~if~---------~~~e------------------------~V~s~~~d 135 (404)
T KOG1409|consen 102 NK-------------MTFLKDYLAHQARVSAIVFS---------LTHE------------------------WVLSTGKD 135 (404)
T ss_pred hh-------------cchhhhhhhhhcceeeEEec---------CCce------------------------eEEEeccc
Confidence 21 11245667888999999886 2222 88899998
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
..+.---.+....+..+...... ....+.-.-.++....+.+.+-++..... .+....
T Consensus 136 k~~~~hc~e~~~~lg~Y~~~~~~--------t~~~~d~~~~fvGd~~gqvt~lr~~~~~~--------------~~i~~~ 193 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYNFETPA--------SALQFDALYAFVGDHSGQITMLKLEQNGC--------------QLITTF 193 (404)
T ss_pred cceEEEeeccCCcccceEeeccC--------CCCceeeEEEEecccccceEEEEEeecCC--------------ceEEEE
Confidence 87765544443333332211110 01111111111112225555555443321 234445
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
.+|...+.+++|.+..+.+.+ ..+..+.+||+-... + ...++.+|...|..+..-+--+.+.+++.||.|.+
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-g------~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-G------TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-c------eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 577899999999998888888 689999999997411 1 12567788888999888888889999999999999
Q ss_pred EEcCCCceee-eecc-------Cccc----------ccccCC-C---CC-CCeeEEEEccCCCEEEEEecCCeEEEEE--
Q 007489 351 VDVSSSELLH-TFTP-------CREE----------HDREIQ-P---SE-PPITKMFTSSDGQWLAAVNCFGDVYIFN-- 405 (601)
Q Consensus 351 wd~~~~~~~~-~~~~-------~~~~----------~~~~~~-~---~~-~~i~~l~~spd~~~las~~~dg~i~iwd-- 405 (601)
|+.+...... .... +... ..-.+. . +. ..+...+- .......+.+..-.+++-|
T Consensus 267 w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~-s~~~~~p~mg~e~~vR~~~~c 345 (404)
T KOG1409|consen 267 WNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCS-SNRSSYPTMGFEFSVRVCDSC 345 (404)
T ss_pred EeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccc-cCccccccccceeEEEEeccc
Confidence 9986432110 0000 0000 000000 0 11 11111221 1111222222222344443
Q ss_pred ------cCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 406 ------LEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 406 ------~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.+. .+.......| ..|++|.+.. +-.+|++++.|..|+|||+..
T Consensus 346 ~~~i~~~~~-t~LA~phei~-tgItamhlqe-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 346 YPTIKDEER-TPLAIPHEIK-TGITAMHLQE-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred chhhhcCCC-Cccccccccc-cceeEEEhhh-hccceeecCCceEEEEEechh
Confidence 322 1111111222 5799999998 888999999999999999975
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.5e-11 Score=113.44 Aligned_cols=292 Identities=12% Similarity=0.101 Sum_probs=189.6
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhcccc-cc-ceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFH-KG-DVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h-~~-~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
.|...-+.|..+||| .+++|...-.|++||+..-.+. |.-| .+ .|.-.-.+.|-..++---.|.+|-+-...+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 578888999999999 5788889999999999854332 3323 22 3333334444444554555666554432221
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
. ..++. ...-+.|+++. |.. -|++++.
T Consensus 127 h-------------------y~~RI-P~~GRDm~y~~--------~sc-------------------------Dly~~gs 153 (703)
T KOG2321|consen 127 H-------------------YRTRI-PKFGRDMKYHK--------PSC-------------------------DLYLVGS 153 (703)
T ss_pred e-------------------eeeec-CcCCccccccC--------CCc-------------------------cEEEeec
Confidence 1 00000 11123333320 111 4666666
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
...|+-++++.+.-+.+...
T Consensus 154 g~evYRlNLEqGrfL~P~~~------------------------------------------------------------ 173 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFET------------------------------------------------------------ 173 (703)
T ss_pred CcceEEEEcccccccccccc------------------------------------------------------------
Confidence 66777777765433322220
Q ss_pred EecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcC-----ccceeEEEEccCCCeEEEEec
Q 007489 271 KSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRK-----LQFAHSMIFSYDSSQLIIAGH 344 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~s~d~~~l~~~~~ 344 (601)
....++++.+++...+|++| .+|.|..||.+... ....+++.. ....+ ...|+++.|+.||-.+++|+.
T Consensus 174 ---~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~-~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 174 ---DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAAS-SVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred ---ccccceeeeecCccceEEecccCceEEEecchhhh-hheeeeccc-ccCCCccccccCcceEEEecCCceeEEeecc
Confidence 12568888899988999995 69999999998622 111122211 12222 345999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC--CCEEEEEecCCeEEEEEcCCceEEEEeeccCCCc
Q 007489 345 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD--GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS 422 (601)
Q Consensus 345 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 422 (601)
+|.|.|||+.+.+++..-... ..-+|..+.|-+. ...|++. ....++|||-.+++....+... ..
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~----------~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt--~~ 315 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHG----------YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT--SD 315 (703)
T ss_pred CCcEEEEEcccCCceeecccC----------CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc--CC
Confidence 999999999988876544321 5667899999775 3455554 3457999999999987776543 46
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC-cccchh
Q 007489 423 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ-LGEWSM 460 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~ 460 (601)
+..+++-| ++.+++++-.+..+..|=+..-. ...|.+
T Consensus 316 lND~C~~p-~sGm~f~Ane~~~m~~yyiP~LGPaPrWCS 353 (703)
T KOG2321|consen 316 LNDFCFVP-GSGMFFTANESSKMHTYYIPSLGPAPRWCS 353 (703)
T ss_pred cCceeeec-CCceEEEecCCCcceeEEccccCCCchhhh
Confidence 99999999 88899999999988888776543 344643
No 251
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.46 E-value=9e-11 Score=114.91 Aligned_cols=307 Identities=16% Similarity=0.187 Sum_probs=182.0
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
|++++.+|.|.-+|..+|+.+.+..... .....+.. .++.++.++.+|.+..+|..+|+.+...... +.+
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~~--------~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~ 137 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLDE--------RLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEV 137 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCCC--------CcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-cee
Confidence 6778889999999999999998887421 11112222 2448888999999999999999987655432 222
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc-ceeEEEeeccccCCCCCCcccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-DVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
.+.-.. .+..++.++.++.+..||..+++. .|........... ...+..+ .+
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~-------------~W~~~~~~~~~~~~~~~sp~~----------~~--- 190 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGER-------------LWTYSRVTPALTLRGSASPVI----------AD--- 190 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCce-------------eeEEccCCCceeecCCCCCEE----------EC---
Confidence 221111 355677788899999999988873 3432211100000 0000011 01
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
..++.+..++.+..+|..+...
T Consensus 191 ----------------------~~v~~~~~~g~v~ald~~tG~~------------------------------------ 212 (377)
T TIGR03300 191 ----------------------GGVLVGFAGGKLVALDLQTGQP------------------------------------ 212 (377)
T ss_pred ----------------------CEEEEECCCCEEEEEEccCCCE------------------------------------
Confidence 2677788888998888876332
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe-EEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI-ICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
+|........ +.. ..... ..+ ....+ .++..++.+.++.++.|+..+ +..+|....
T Consensus 213 --~W~~~~~~~~-------g~~---~~~~~-----~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~t---G~~~W~~~~-- 269 (377)
T TIGR03300 213 --LWEQRVALPK-------GRT---ELERL-----VDVDGDPVV-DGGQVYAVSYQGRVAALDLRS---GRVLWKRDA-- 269 (377)
T ss_pred --eeeeccccCC-------CCC---chhhh-----hccCCccEE-ECCEEEEEEcCCEEEEEECCC---CcEEEeecc--
Confidence 1211100000 000 00000 000 00111 134444457788999999875 677776541
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
.. ..... .++..+++++.+|.+..+|..+++.+...... .......... .+..|++++.+|
T Consensus 270 -~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~----------~~~~~ssp~i--~g~~l~~~~~~G 330 (377)
T TIGR03300 270 -SS----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL----------KYRQLTAPAV--VGGYLVVGDFEG 330 (377)
T ss_pred -CC----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc----------cCCccccCEE--ECCEEEEEeCCC
Confidence 11 11122 24667888889999999999999877655321 1111222222 467899999999
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
.|+++|..+++..+.++........+..+. + +.|++++.||.|+.|
T Consensus 331 ~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999887764332122333443 3 458899999998876
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.7e-09 Score=95.13 Aligned_cols=302 Identities=13% Similarity=0.108 Sum_probs=187.5
Q ss_pred CCcEEEeeCCc--cchh-hhccccccceEEEEEeCCCCEEEEEee---CCeEEEEEecc--CcCCCCCCCCCccccceeE
Q 007489 57 TGSVQFWDSRH--GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASC--ESIGPNDGLSSSEVIKKWI 128 (601)
Q Consensus 57 dg~i~vwd~~~--~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vw~~~~--~~~~~~~~~~~~~~~~~~~ 128 (601)
+.-|.+|++.+ |++- ..+-.+.+.++-|+|+|++++|+++-. +|.|..|.++. +.+ .
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L---------------t 79 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL---------------T 79 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE---------------E
Confidence 46699998863 3321 222346788899999999999998855 47788888775 332 1
Q ss_pred EecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC-CeEEEEeccccCCcCC
Q 007489 129 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD-TKLFAYCANEFTKFSP 207 (601)
Q Consensus 129 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~v~~~~~~~~~~~~~ 207 (601)
.+.......+.-..++++ ++++ +++++... |.|.++.++....+..
T Consensus 80 ~ln~~~~~g~~p~yvsvd---------~~g~------------------------~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 80 FLNRQTLPGSPPCYVSVD---------EDGR------------------------FVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred EeeccccCCCCCeEEEEC---------CCCC------------------------EEEEEEccCceEEEEEcccCCcccc
Confidence 122222223333677776 7776 77777665 5999999876443332
Q ss_pred C------ccCCCCCccceeeeeccccCCCeEEEEEeC---CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 208 H------EICPAPQRVPIHLVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 208 ~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
. .......+....-+....+.|++++++..+ ..+.+|++....-. .......+.....
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~-------------~~~~~~v~~G~GP 193 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT-------------PADPAEVKPGAGP 193 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc-------------cccccccCCCCCc
Confidence 2 111111222223356677899998888766 67888888733211 1122222445778
Q ss_pred EEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeee-cCCc---CccceeEEEEccCCCeEEEEecC-CcEEEE
Q 007489 279 ICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKR-QLPR---KLQFAHSMIFSYDSSQLIIAGHD-RRIYVV 351 (601)
Q Consensus 279 ~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~---~~~~v~~i~~s~d~~~l~~~~~d-g~i~vw 351 (601)
+.++|+|++++..+ --+++|.+|..+.. ...+-.++.. .++. ...+...|.+++||++|.++.+. ..|.+|
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 89999999998776 37889999999862 2232222221 1221 13467889999999999887653 468888
Q ss_pred EcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-CeEEEEEcC--CceEEEEeeccCCCceeEEE
Q 007489 352 DVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-GDVYIFNLE--IQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 352 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~v~~l~ 427 (601)
.+... ..+..+..... +........|+|+|++|+++..+ ..|.+|.++ +|+............+.||.
T Consensus 272 ~V~~~~g~L~~~~~~~t--------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 272 SVDPDGGKLELVGITPT--------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred EEcCCCCEEEEEEEecc--------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEE
Confidence 87433 22222221100 34447789999999999888754 458888775 55554333333445567777
Q ss_pred ec
Q 007489 428 FP 429 (601)
Q Consensus 428 ~~ 429 (601)
|.
T Consensus 344 f~ 345 (346)
T COG2706 344 FL 345 (346)
T ss_pred Ec
Confidence 64
No 253
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=8.2e-13 Score=119.99 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=149.1
Q ss_pred cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEE
Q 007489 7 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 85 (601)
Q Consensus 7 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~ 85 (601)
....+.||| ..|..++.++ ....|..+.|.|.- .|++++..|.++--|+.+|+++..+..-.+.+..|+
T Consensus 189 QK~y~yvYD-~~GtElHClk---------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 189 QKKYVYVYD-NNGTELHCLK---------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK 258 (545)
T ss_pred hhceEEEec-CCCcEEeehh---------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence 345899999 5688888887 44679999999999 889999999999999999999999998899999999
Q ss_pred EeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCC
Q 007489 86 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 165 (601)
Q Consensus 86 ~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~ 165 (601)
-+|-+..+-+|...|+|.+|.....+. +..+..|...|.++++. ++|.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skeP-----------------LvKiLcH~g~V~siAv~---------~~G~------ 306 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEP-----------------LVKILCHRGPVSSIAVD---------RGGR------ 306 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcch-----------------HHHHHhcCCCcceEEEC---------CCCc------
Confidence 999999999999999999999988775 77788999999999998 8886
Q ss_pred CCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEee
Q 007489 166 REKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILS 245 (601)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~ 245 (601)
++++.|.|..+++||++.+..+..+.. + ..+..+++|..|.+.++.+..+.||.
T Consensus 307 ------------------YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p-------~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 307 ------------------YMATTGLDRKVKIWDLRNFYQLHTYRT-P-------HPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred ------------------EEeecccccceeEeeeccccccceeec-C-------CCccccccccccceeeecCCeeeeeh
Confidence 999999999999999998774443332 1 34557788888998888889999997
Q ss_pred cc
Q 007489 246 VR 247 (601)
Q Consensus 246 ~~ 247 (601)
=.
T Consensus 361 d~ 362 (545)
T KOG1272|consen 361 DA 362 (545)
T ss_pred hh
Confidence 44
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.5e-10 Score=113.68 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---CcEEEEE
Q 007489 278 IICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVD 352 (601)
Q Consensus 278 i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd 352 (601)
....+|+|||+.|+. + .++...+|.+.....+... ..+......+....|||||++|+..+.+ ..|.+||
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~-----~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~d 357 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP-----RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYD 357 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccce-----EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEE
Confidence 356789999998887 3 3566677766531112111 1122223455778999999999877653 3699999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec---CCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
+.+++... +.. ....+....|+|||++|+.... ...|+++|+++++...... .. ..+...+|+
T Consensus 358 l~~g~~~~-Lt~-----------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~-g~~~~p~Ws 423 (428)
T PRK01029 358 LATGRDYQ-LTT-----------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GS-GEKRFPSWG 423 (428)
T ss_pred CCCCCeEE-ccC-----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC-CcccCceec
Confidence 98876543 332 2234667899999998875443 3568999998887654332 22 356677888
Q ss_pred C
Q 007489 430 P 430 (601)
Q Consensus 430 p 430 (601)
|
T Consensus 424 ~ 424 (428)
T PRK01029 424 A 424 (428)
T ss_pred C
Confidence 7
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=2.1e-09 Score=100.11 Aligned_cols=236 Identities=10% Similarity=0.131 Sum_probs=141.5
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe----CCeeEEeeccccCCcccCCCCCCCCCcc
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY----SCRLDILSVRLENNVESRSSSGGHASTS 265 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 265 (601)
.+..|.+||..+.+..........|..........++++|||+.+... +..+.+.++....
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k--------------- 139 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA--------------- 139 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------------
Confidence 477999999999776655554444332333444567789999866643 3678888887554
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecC-CcCccce-eEEEEcc-CCCeEEEE
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-PRKLQFA-HSMIFSY-DSSQLIIA 342 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v-~~i~~s~-d~~~l~~~ 342 (601)
.+.++..+....+. . .++..+.+.+.|+......+.. .+... .....+ .....++ ..-.|++ +|+++.+.
T Consensus 140 vv~ei~vp~~~~vy--~-t~e~~~~~~~~Dg~~~~v~~d~--~g~~~--~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 140 FVRMMDVPDCYHIF--P-TANDTFFMHCRDGSLAKVGYGT--KGNPK--IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EEEEEeCCCCcEEE--E-ecCCccEEEeecCceEEEEecC--CCceE--EeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 45555554322221 1 2223333445555555544443 11111 111111 1100000 0004566 88888776
Q ss_pred ecCCcEEEEEcCCCc-----eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe----------cCCeEEEEEcC
Q 007489 343 GHDRRIYVVDVSSSE-----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN----------CFGDVYIFNLE 407 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~----------~dg~i~iwd~~ 407 (601)
.. |.|.+.|+...+ ....+.... .........+.-++++|+++.|+... ..+.|.++|..
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~----~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAE----KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccc----cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 66 999999964332 222222100 00001233445599999999888743 22579999999
Q ss_pred CceEEEEeeccCCCceeEEEecCCCCC-EEEEEe-CCCeEEEEEcCCCCc
Q 007489 408 IQRQHWFISRLEGASVTAAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 408 ~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~~~~-~dg~v~vwd~~~~~~ 455 (601)
+++....++. +..+..++++| |++ +|++.. .++.|.++|+.+++.
T Consensus 288 t~kvi~~i~v--G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 288 TGKRLRKIEL--GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCeEEEEEeC--CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999888775 35899999999 988 777776 578899999999874
No 256
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6e-10 Score=108.21 Aligned_cols=364 Identities=14% Similarity=0.061 Sum_probs=207.6
Q ss_pred EEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCC------------CEEEEEeeCCeEEEEEe
Q 007489 40 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH------------NRVFSTGSDGQVILYKA 107 (601)
Q Consensus 40 V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~------------~~l~s~~~dg~i~vw~~ 107 (601)
-.++.|+|.|.|+-|+. ..|.+-|..+-+.++++..|...|+.+.|.|.. -.|+++...|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 67889999998888776 468899999999999999999999999998732 25678888999999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
..+.. ...+..|...+..++|.+.. ++. ...|+.
T Consensus 97 ~~~s~-----------------~~~l~~~~~~~qdl~W~~~r------d~S-----------------------rd~Lla 130 (1062)
T KOG1912|consen 97 VLASV-----------------INWLSHSNDSVQDLCWVPAR------DDS-----------------------RDVLLA 130 (1062)
T ss_pred hhhhh-----------------hhhhcCCCcchhheeeeecc------Ccc-----------------------hheeEE
Confidence 98764 45667788889999987221 111 247777
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC---CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCc
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS---HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 264 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 264 (601)
-....+|.+|+..+++.+-.+...... ..++.+. +....+.+..|.+-+-+.-...... .+
T Consensus 131 Ih~ss~lvLwntdtG~k~Wk~~ys~~i-------Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~---------~p 194 (1062)
T KOG1912|consen 131 IHGSSTLVLWNTDTGEKFWKYDYSHEI-------LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD---------VP 194 (1062)
T ss_pred ecCCcEEEEEEccCCceeeccccCCcc-------eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC---------CC
Confidence 777889999999988776655533221 1222233 3333333333443333322111100 00
Q ss_pred ceEEEEEecCCC-------------------------CeEEEEEcCCCCEEE-EEcCCccEEEEeecCCCCcceEEEeee
Q 007489 265 SLLVQVKSKASR-------------------------KIICSTISNSGMLFA-YSDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 265 ~~~~~~~~~~~~-------------------------~i~~~~~s~~g~~l~-~~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+..++...|.. ....++|+|.-+-+. ..-...+.++|++. ...+- ..
T Consensus 195 gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~---~~~l~---vv 268 (1062)
T KOG1912|consen 195 GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY---ECCLA---VV 268 (1062)
T ss_pred ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh---hceeE---EE
Confidence 111122211110 011345677654433 36778899999986 33431 12
Q ss_pred cCCcCccceeEEEEccCCC--eEEEEecCCcEEEEEcCCCceee-----eeccCcccccccCC-CCCCCeeEEEEccC-C
Q 007489 319 QLPRKLQFAHSMIFSYDSS--QLIIAGHDRRIYVVDVSSSELLH-----TFTPCREEHDREIQ-PSEPPITKMFTSSD-G 389 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~--~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~i~~l~~spd-~ 389 (601)
.++ .+.+.-+.+-|+++ .|++...||.+.+|-.+...... .|......+...+. -.+-.+...+..|. .
T Consensus 269 pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~ 346 (1062)
T KOG1912|consen 269 PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTP 346 (1062)
T ss_pred Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCCh
Confidence 222 23445566666654 58899999999999765421111 11100000000000 00111111222333 2
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEE-------------------------ee-----ccCCCceeEEEecCC--------
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWF-------------------------IS-----RLEGASVTAAGFPPQ-------- 431 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~-------------------------~~-----~~~~~~v~~l~~~p~-------- 431 (601)
..++.--.+|.+.+|.+.+++.... +. ..|.+..++....|-
T Consensus 347 sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~ 426 (1062)
T KOG1912|consen 347 SALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVEN 426 (1062)
T ss_pred hhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeec
Confidence 2333333456666776654332110 00 001112222222210
Q ss_pred --CC-------CEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 432 --NN-------NVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 432 --~~-------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.+ .++|+|+..|+|.++|+.++.+ .+.+.-|...|.++.|--.
T Consensus 427 ~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v-----------~~~fsvht~~VkgleW~g~ 478 (1062)
T KOG1912|consen 427 DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAV-----------AASFSVHTSLVKGLEWLGN 478 (1062)
T ss_pred CCCCCccceeeeeEEeecCCceEEEEEecchhh-----------hhhhcccccceeeeeeccc
Confidence 11 3678899999999999999874 5578889999999999654
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.2e-10 Score=111.42 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCEEEEEc--CC--ccEE--EEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEE
Q 007489 278 IICSTISNSGMLFAYSD--HV--KPSL--FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYV 350 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~~--~~--~v~l--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~v 350 (601)
....+|||||+.|+... .+ .+.+ |++.....+. ...+ ...........+|+|||+.|+..+ .+|...+
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~-~~~l----t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK-PRRL----LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc-ceEe----ecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 44578999999888733 23 3333 4444311111 1011 111122335679999999888766 4565445
Q ss_pred E--EcCC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEEEEeeccCCCcee
Q 007489 351 V--DVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVT 424 (601)
Q Consensus 351 w--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~ 424 (601)
| ++.. +.....+.. +...+....|||||++|+..+.+ ..|.+||+.+++...... . ...+.
T Consensus 308 y~~~~~~~g~~~~~lt~-----------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~-~~~~~ 374 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTK-----------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-S-PENKE 374 (428)
T ss_pred EEEECcccccceEEecc-----------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-C-CCCcc
Confidence 4 4432 222333433 34566788999999999876543 469999999987753322 2 23567
Q ss_pred EEEecCCCCCEEEEEeC---CCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 425 AAGFPPQNNNVLIITTS---SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
...|+| |++.|+.... ...|+++|+.+++... +....+.+...+|+|-
T Consensus 375 ~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~~~------------Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAI-DSLHLVYSAGNSNESELYLISLITKKTRK------------IVIGSGEKRFPSWGAF 425 (428)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE------------eecCCCcccCceecCC
Confidence 889999 9988876543 3579999998876422 2223445667788875
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=3e-10 Score=113.29 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=99.5
Q ss_pred CCeEEEEEcCCCCEEEE--EcCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-C--cE
Q 007489 276 RKIICSTISNSGMLFAY--SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-R--RI 348 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~--~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g--~i 348 (601)
..+.+++|+|||+.|++ ..++ .|++|++.. +. . ..+..+........|+|||++|+..+.. + .|
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~---~~-~-----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~i 304 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG---KQ-L-----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQI 304 (417)
T ss_pred CCccceEECCCCCEEEEEECCCCCccEEEEECCC---CC-E-----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceE
Confidence 33556789999987775 2334 466666653 21 1 1122223334567899999998876653 3 58
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC---eEEEEEcCCceEEEEeeccCCCceeE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
+++|+.+++.. .+.. +...+..+.|+|||++|+.++.++ .|.+||+.++... .+... .....
T Consensus 305 y~~d~~~~~~~-~l~~-----------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~ 369 (417)
T TIGR02800 305 YMMDADGGEVR-RLTF-----------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT--GLDES 369 (417)
T ss_pred EEEECCCCCEE-Eeec-----------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC--CCCCC
Confidence 88888766543 3332 345567889999999999888776 7999999886543 23221 23455
Q ss_pred EEecCCCCCEEEEEeCCC---eEEEEEcCCC
Q 007489 426 AGFPPQNNNVLIITTSSN---QVYVFDVEAK 453 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~dg---~v~vwd~~~~ 453 (601)
..|+| ++++|+.++.++ .+++.+....
T Consensus 370 p~~sp-dg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 370 PSFAP-NGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred ceECC-CCCEEEEEEeCCCcEEEEEEECCCc
Confidence 68999 999888887654 4666665543
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=5.3e-08 Score=103.71 Aligned_cols=325 Identities=14% Similarity=0.117 Sum_probs=187.7
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEe----eCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFW----DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vw----d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
..+.|.++.|.++. .++.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+....++++.+.+..-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 34679999999998 89999999999999 554322 2222334678999999999999999888998887753211
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
.+.....+..+.. ....++.|.
T Consensus 153 ------------------~i~E~~l~~~~~~----------------------------------------~~~~VsVGW 174 (928)
T PF04762_consen 153 ------------------PISEVPLDSDDFG----------------------------------------ESKHVSVGW 174 (928)
T ss_pred ------------------EEEEeecCccccC----------------------------------------CCceeeecc
Confidence 1222221111110 012333332
Q ss_pred CCeEEEEeccccCC----cCCCccC---CCCCccceeeeeccccCCCeEEEEEeC--------CeeEEeeccccCCcccC
Q 007489 191 DTKLFAYCANEFTK----FSPHEIC---PAPQRVPIHLVHNTIFSHTSLLLVQYS--------CRLDILSVRLENNVESR 255 (601)
Q Consensus 191 d~~v~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~i~i~~~~~~~~~~~~ 255 (601)
..+=.-+.....+. ....... ..... .......++|.+||.+++... +.++||+-. +
T Consensus 175 GkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re---G---- 246 (928)
T PF04762_consen 175 GKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE---G---- 246 (928)
T ss_pred CcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC---c----
Confidence 22211111111110 0000000 00000 112445677999999877543 456677654 1
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc----CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEE
Q 007489 256 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD----HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMI 331 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 331 (601)
.+.....+-.+--.+++|.|.|++||+.. ...|.+|.-+ |.+--+.. .........|..++
T Consensus 247 ----------~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN----GLrhgeF~-l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 247 ----------ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN----GLRHGEFT-LRFDPEEEKVIELA 311 (928)
T ss_pred ----------eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC----CcEeeeEe-cCCCCCCceeeEEE
Confidence 12222222233345789999999999942 2445555543 22211111 11223455789999
Q ss_pred EccCCCeEEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcC-
Q 007489 332 FSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLE- 407 (601)
Q Consensus 332 ~s~d~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~- 407 (601)
|++|+..||+...|. |.+|-..+.. +.+.+.-. ....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~----------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS----------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc----------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 999999999977665 9999987664 34444431 23345558998854 346666666666655541
Q ss_pred ---C----------------ceEEEE-------eecc-------CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 408 ---I----------------QRQHWF-------ISRL-------EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 408 ---~----------------~~~~~~-------~~~~-------~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
. |..... +|.. -..+|.+++|++ ++..+++-..||.|.+|......
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCC
Confidence 0 110000 1100 125799999999 88789999999999999976543
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2e-10 Score=113.78 Aligned_cols=235 Identities=11% Similarity=0.113 Sum_probs=135.9
Q ss_pred cEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC-C--eEEEEEeccCcCCCCCCCCCccccceeEEecCccc
Q 007489 59 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-G--QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 135 (601)
Q Consensus 59 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (601)
.|.++|.. |...+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++. ..+..
T Consensus 199 ~l~i~d~d-G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~------------------~~lt~ 259 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR------------------EKVTS 259 (448)
T ss_pred EEEEEeCC-CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe------------------EEecC
Confidence 67777876 33334555667789999999999998866543 3 588888877652 11111
Q ss_pred cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC--eEEEEeccccCCcCCCccCCC
Q 007489 136 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--KLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 136 h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~~~~~~~~~~~~~~~~~~~ 213 (601)
........+|+ |||+ .++++...++ .|+++|+.+..
T Consensus 260 ~~g~~~~~~wS---------PDG~-----------------------~La~~~~~~g~~~Iy~~dl~tg~---------- 297 (448)
T PRK04792 260 FPGINGAPRFS---------PDGK-----------------------KLALVLSKDGQPEIYVVDIATKA---------- 297 (448)
T ss_pred CCCCcCCeeEC---------CCCC-----------------------EEEEEEeCCCCeEEEEEECCCCC----------
Confidence 12223356777 8886 2334455555 46666654311
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~- 292 (601)
+.++. .+.......+|+|||+.|+.
T Consensus 298 -----------------------------------------------------~~~lt-~~~~~~~~p~wSpDG~~I~f~ 323 (448)
T PRK04792 298 -----------------------------------------------------LTRIT-RHRAIDTEPSWHPDGKSLIFT 323 (448)
T ss_pred -----------------------------------------------------eEECc-cCCCCccceEECCCCCEEEEE
Confidence 00000 11123456789999998877
Q ss_pred E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-C--cEEEEEcCCCceeeeeccCccc
Q 007489 293 S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-R--RIYVVDVSSSELLHTFTPCREE 368 (601)
Q Consensus 293 ~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~ 368 (601)
+ .++...+|.++... +. .- .....+. .....+|+|||++|+..+.+ + .|.++|+.+++.. .+..
T Consensus 324 s~~~g~~~Iy~~dl~~-g~-~~---~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~---- 391 (448)
T PRK04792 324 SERGGKPQIYRVNLAS-GK-VS---RLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS---- 391 (448)
T ss_pred ECCCCCceEEEEECCC-CC-EE---EEecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC----
Confidence 3 34555666555411 21 11 1111221 22356899999998877653 3 4666788776543 2322
Q ss_pred ccccCCCCCCCeeEEEEccCCCEEEEEecC-C--eEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 369 HDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 369 ~~~~~~~~~~~i~~l~~spd~~~las~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
. .......|+|||++|+..+.+ | .++++++++.. ...++.. ...+...+|+|
T Consensus 392 -------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~-~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 392 -------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF-KARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred -------C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCC-CCCcCCCccCC
Confidence 1 112234799999998866543 3 37778875443 3345432 34677788887
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=2.2e-10 Score=114.26 Aligned_cols=235 Identities=12% Similarity=0.110 Sum_probs=139.4
Q ss_pred CCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---CeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 57 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 57 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
...|.++|.. +.....+..+...+.+.+|+|||++|+.+..+ ..|.+|++.++.. ..+
T Consensus 169 ~~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------------------~~~ 229 (417)
T TIGR02800 169 RYELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------------------EKV 229 (417)
T ss_pred cceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------------------EEe
Confidence 3468888886 44455566677789999999999999876644 4799999988652 222
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC--eEEEEeccccCCcCCCccC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--KLFAYCANEFTKFSPHEIC 211 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~~~~~~~~~~~~~~~~~ 211 (601)
..+...+.+++|+ ||++ .++++.+.++ .|++|++.+...
T Consensus 230 ~~~~~~~~~~~~s---------pDg~-----------------------~l~~~~~~~~~~~i~~~d~~~~~~------- 270 (417)
T TIGR02800 230 ASFPGMNGAPAFS---------PDGS-----------------------KLAVSLSKDGNPDIYVMDLDGKQL------- 270 (417)
T ss_pred ecCCCCccceEEC---------CCCC-----------------------EEEEEECCCCCccEEEEECCCCCE-------
Confidence 3334455667777 8876 2444555444 577777654210
Q ss_pred CCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 007489 212 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 291 (601)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 291 (601)
..+. .+........|+|||+.|+
T Consensus 271 --------------------------------------------------------~~l~-~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 271 --------------------------------------------------------TRLT-NGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred --------------------------------------------------------EECC-CCCCCCCCEEECCCCCEEE
Confidence 0000 0112223457899999887
Q ss_pred E-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC---cEEEEEcCCCceeeeeccCc
Q 007489 292 Y-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR---RIYVVDVSSSELLHTFTPCR 366 (601)
Q Consensus 292 ~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~ 366 (601)
. + ..+...||.++.. +... ..+..+........|+|+|++|+.++.++ .|.+||+.++.. ..+..
T Consensus 294 ~~s~~~g~~~iy~~d~~--~~~~-----~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~-- 363 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDAD--GGEV-----RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTD-- 363 (417)
T ss_pred EEECCCCCceEEEEECC--CCCE-----EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccC--
Confidence 6 3 2344345544431 1111 11122233456789999999999888776 789999887543 22322
Q ss_pred ccccccCCCCCCCeeEEEEccCCCEEEEEecCC---eEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 367 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 367 ~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
........|+|||++|+..+.++ .+++.+.+.... ..+... ...+..++|
T Consensus 364 ----------~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~-~~~~~~-~g~~~~~~w 416 (417)
T TIGR02800 364 ----------TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR-ARLPLG-NGDVREPAW 416 (417)
T ss_pred ----------CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee-eECCCC-CCCcCCCCC
Confidence 11234568999999998777654 466666554433 333322 234444444
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=5.2e-10 Score=110.91 Aligned_cols=172 Identities=18% Similarity=0.242 Sum_probs=103.8
Q ss_pred EEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CC--cEEEEEc
Q 007489 279 ICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYVVDV 353 (601)
Q Consensus 279 ~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg--~i~vwd~ 353 (601)
...+|+|||+.|+. ..++...||.++.. +... ..+..+.......+|+|||++|+..+. ++ .|+++|+
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~--tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIA--TKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECC--CCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 35789999998876 35565445544331 1121 122233334567899999998877664 33 4777787
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CC--eEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG--DVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
.+++... +.. ........+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......|+|
T Consensus 338 ~~g~~~~-Lt~-----------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~sp 402 (448)
T PRK04792 338 ASGKVSR-LTF-----------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAP 402 (448)
T ss_pred CCCCEEE-Eec-----------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECC
Confidence 7776433 221 1122345789999999987654 33 4666788887654 22221 1223458999
Q ss_pred CCCCEEEEEeCC-C--eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 431 QNNNVLIITTSS-N--QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 431 ~~~~~l~~~~~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+++.|+....+ + .+++++++.+. ...+..+.+.+...+|+|-
T Consensus 403 -dG~~I~~~~~~~g~~~l~~~~~~G~~------------~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 403 -NGTMVIYSTTYQGKQVLAAVSIDGRF------------KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCCc------------eEECcCCCCCcCCCccCCC
Confidence 99888776643 3 47777875543 2223344456777788873
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.6e-10 Score=110.38 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCEEEE--EcCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CC--cEEE
Q 007489 278 IICSTISNSGMLFAY--SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYV 350 (601)
Q Consensus 278 i~~~~~s~~g~~l~~--~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg--~i~v 350 (601)
+...+|+|||+.|+. ..++ .|+++++.. + .. ..+..+........|+|||+.|+..+. +| .|++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~---~-~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS---R-QL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCC---C-Ce-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 345789999998875 3344 455556653 2 11 112223334466789999998877664 33 5777
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-C--eEEEEEcCCceEEEEeeccCCCceeEEE
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVTAAG 427 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 427 (601)
+++.+++.... .. .........|||||++|+..+.+ + .|.+||+.+++... +... .......
T Consensus 316 ~d~~~g~~~~l-t~-----------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~ 380 (430)
T PRK00178 316 VNVNGGRAERV-TF-----------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPS 380 (430)
T ss_pred EECCCCCEEEe-ec-----------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCce
Confidence 88877764332 21 11223457899999999877643 3 58899999887543 3221 1233568
Q ss_pred ecCCCCCEEEEEeCC---CeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 428 FPPQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 428 ~~p~~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
|+| ++++|+.++.+ ..|+++++..+.. ..+..+.+.+...+|+|-
T Consensus 381 ~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~------------~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 381 VAP-NGTMLIYATRQQGRGVLMLVSINGRVR------------LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECC-CCCEEEEEEecCCceEEEEEECCCCce------------EECcCCCCCcCCCccCCC
Confidence 999 99988877654 3577778765432 123334456677778774
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=3.1e-09 Score=102.39 Aligned_cols=455 Identities=13% Similarity=0.125 Sum_probs=250.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEE-------eccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRIT-------VGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ 72 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~ 72 (601)
+||.|+.||.++|..+.+...-...+ ......+.||.+.|.-+.|+.+. .|-+++.+|.|.||-+-.|.-..
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E 107 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE 107 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH
Confidence 58999999999999875432111000 00122345999999999999888 89999999999999998887655
Q ss_pred hcc--ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 73 AHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 73 ~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
... ...+.|.+++|+.||+.+...-.||.|.+=.+++.+.-.++ +.+ .....+.|+
T Consensus 108 EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKe----------------Lkg--~~l~hv~ws---- 165 (1189)
T KOG2041|consen 108 EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKE----------------LKG--QLLAHVLWS---- 165 (1189)
T ss_pred HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchh----------------cch--heccceeec----
Confidence 443 35678999999999999999989998888777765531111 100 001122222
Q ss_pred CCCCCCccccccc----------------------------CC--CCcccccccccc-------ccCCCCEEEEecCCCe
Q 007489 151 REDPLPEDKVKRS----------------------------RG--REKPIDFSYHKW-------AHLGVPMLISAGDDTK 193 (601)
Q Consensus 151 ~~~~~~d~~~~~~----------------------------~~--~~~~~~~~~~~~-------~~~~~~~l~s~~~d~~ 193 (601)
+|.+..-+ .+ .+.+....-..| .+++.+.|+.+-..|.
T Consensus 166 -----~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 166 -----EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred -----ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 22211000 00 000000101112 2445677888877777
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
+.+..-.+...... . .....+....|+++|.+|+..+....--.-...+...... ..| +.+..++.+
T Consensus 241 ~QiMR~eND~~Pvv-------~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G----~i~gtlkvp 307 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVV-------V-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYG----HIVGTLKVP 307 (1189)
T ss_pred ehhhhhcCCCCCeE-------E-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cch----hheEEEecC
Confidence 66654332110000 0 0013556778999999888765322111100000000000 011 134444444
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCccEEEEeecC-----------------C---CCcceEEEeee---------------
Q 007489 274 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKG-----------------K---VGQGEWIINKR--------------- 318 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~-----------------~---~~~~~~~~~~~--------------- 318 (601)
...|++++|-..|-.+|.+-|+.|++-+++.. + -+...|+....
T Consensus 308 -g~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~ 386 (1189)
T KOG2041|consen 308 -GSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAF 386 (1189)
T ss_pred -CceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehhe
Confidence 36688888877776666666655555444320 0 00111111000
Q ss_pred ----------cCCcCcc---------ceeEE--------------------EEccCCCeEEEEecCCcEEEEEcCCCcee
Q 007489 319 ----------QLPRKLQ---------FAHSM--------------------IFSYDSSQLIIAGHDRRIYVVDVSSSELL 359 (601)
Q Consensus 319 ----------~~~~~~~---------~v~~i--------------------~~s~d~~~l~~~~~dg~i~vwd~~~~~~~ 359 (601)
...++.. .+..+ -..-++.+++.++.+ .+.+|.....+..
T Consensus 387 ~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~ 465 (1189)
T KOG2041|consen 387 YREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFN 465 (1189)
T ss_pred ecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchh
Confidence 0000000 01000 011134455556655 4778876544322
Q ss_pred eeecc-----------Ccccc----------cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 360 HTFTP-----------CREEH----------DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 360 ~~~~~-----------~~~~~----------~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
..+.+ ..... ...+.+..++|..++. ..++|..+-..|.|.-|.+...-.....+.
T Consensus 466 s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~--sdk~l~vareSG~I~rySl~nv~l~n~y~~- 542 (1189)
T KOG2041|consen 466 SVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI--SDKFLMVARESGGIYRYSLNNVVLTNSYPV- 542 (1189)
T ss_pred hhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee--cceEEEEEeccCceEEEEecceeeeecccc-
Confidence 22211 00000 0123456778888888 567999999999999999988765433332
Q ss_pred CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCce
Q 007489 419 EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 498 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~ 498 (601)
...+.++..+- +...++....-|.+-+.|+.-.... .++..-+.....-|.++.|..| +++.+.+-....
T Consensus 543 -n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g-------~ql~~~~~~errDVWd~~Wa~d-Np~llAlmeKtr 612 (1189)
T KOG2041|consen 543 -NPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDG-------DQLKLIYTSERRDVWDYEWAQD-NPNLLALMEKTR 612 (1189)
T ss_pred -CchheeEeecc-CcchhhhhhhhceeeeeecccccCc-------ceeeeeehhhhhhhhhhhhccC-CchHHhhhhhce
Confidence 24789999998 8888999988899999888731100 0011122233456888999888 666666666666
Q ss_pred EEEEeCCCCCCC
Q 007489 499 MCVIDFGRPVDP 510 (601)
Q Consensus 499 ~~~~~~~~~~~~ 510 (601)
+++|+=+.|.++
T Consensus 613 myifrgndpeEp 624 (1189)
T KOG2041|consen 613 MYIFRGNDPEEP 624 (1189)
T ss_pred EEEecCcCcccc
Confidence 777766555443
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.2e-10 Score=113.06 Aligned_cols=235 Identities=10% Similarity=0.121 Sum_probs=139.4
Q ss_pred cEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---CeEEEEEeccCcCCCCCCCCCccccceeEEecCccc
Q 007489 59 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 135 (601)
Q Consensus 59 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (601)
.|.++|.. |...+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.. ..+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------------~~l~~ 240 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------------EQITN 240 (430)
T ss_pred EEEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------------EEccC
Confidence 48888887 44445566677889999999999998866543 3688899987752 22222
Q ss_pred cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC--eEEEEeccccCCcCCCccCCC
Q 007489 136 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--KLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 136 h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~~~~~~~~~~~~~~~~~~~ 213 (601)
....+...+|+ |||+ .++++...++ .|+++|+.+...
T Consensus 241 ~~g~~~~~~~S---------pDG~-----------------------~la~~~~~~g~~~Iy~~d~~~~~~--------- 279 (430)
T PRK00178 241 FEGLNGAPAWS---------PDGS-----------------------KLAFVLSKDGNPEIYVMDLASRQL--------- 279 (430)
T ss_pred CCCCcCCeEEC---------CCCC-----------------------EEEEEEccCCCceEEEEECCCCCe---------
Confidence 22334456777 8886 2334555454 567777654210
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~- 292 (601)
..+ ..+........|+|||+.|+.
T Consensus 280 ------------------------------------------------------~~l-t~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 280 ------------------------------------------------------SRV-TNHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred ------------------------------------------------------EEc-ccCCCCcCCeEECCCCCEEEEE
Confidence 000 001122345679999998877
Q ss_pred E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-C--cEEEEEcCCCceeeeeccCccc
Q 007489 293 S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-R--RIYVVDVSSSELLHTFTPCREE 368 (601)
Q Consensus 293 ~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~ 368 (601)
+ .++...+|.++... +.. - .....+ .......|+|||++|+..+.+ + .|.+||+.+++. ..+..
T Consensus 305 s~~~g~~~iy~~d~~~-g~~-~---~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~---- 372 (430)
T PRK00178 305 SDRGGKPQIYKVNVNG-GRA-E---RVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD---- 372 (430)
T ss_pred ECCCCCceEEEEECCC-CCE-E---EeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC----
Confidence 3 33444555444311 211 0 111111 122456899999999887754 3 488899987764 33332
Q ss_pred ccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 369 HDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 369 ~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
........|||||++|+..+.+ ..|.++++++... ..++. +.+.+...+|+|
T Consensus 373 --------~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l~~-~~g~~~~p~ws~ 427 (430)
T PRK00178 373 --------TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR-LPLPT-AQGEVREPSWSP 427 (430)
T ss_pred --------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EECcC-CCCCcCCCccCC
Confidence 1112245899999999876643 3577778865544 23443 334677778887
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=8.7e-10 Score=102.03 Aligned_cols=319 Identities=14% Similarity=0.136 Sum_probs=198.4
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC---------------CcEEEeeCCccchhh
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---------------GSVQFWDSRHGTLLQ 72 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d---------------g~i~vwd~~~~~~~~ 72 (601)
..|.+|.-..+..+.++. | ..|..+.|||.+ +|++=+.. ..+.+||..+|..+.
T Consensus 53 ~~V~~~~g~~~~~l~~~~---------~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~ 122 (561)
T COG5354 53 AGVECWGGPSKAKLVRFR---------H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF 122 (561)
T ss_pred cceEEccccchhheeeee---------c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEe
Confidence 468899887777666775 3 348999999999 77765433 359999999999999
Q ss_pred hccccccc--eE-EEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 73 AHSFHKGD--VN-ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 73 ~~~~h~~~--V~-~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
.+.+-..+ .+ -+.|+.+.++++=- ....+.|+++ +......+ ...++ ...+....++
T Consensus 123 sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p-------------~~~lr--~~gi~dFsis--- 182 (561)
T COG5354 123 SFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHP-------------FKNLR--PVGILDFSIS--- 182 (561)
T ss_pred eccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCc-------------hhhcc--ccceeeEEec---
Confidence 88876555 55 68899988877633 3356899997 44421111 11222 3456666666
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEE-----EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeec
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-----SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN 224 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (601)
|.+. +..|+ ..+.++.+++|.+.....+..+..... .-..
T Consensus 183 ------P~~n----------------------~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-------~~~q 227 (561)
T COG5354 183 ------PEGN----------------------HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-------SGVQ 227 (561)
T ss_pred ------CCCC----------------------CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-------cccE
Confidence 5432 01221 145566777777764333322221111 0112
Q ss_pred cccCCCeEEEEEe-------------CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 007489 225 TIFSHTSLLLVQY-------------SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 291 (601)
Q Consensus 225 ~~~~~~~~~l~~~-------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 291 (601)
+.|++.|.+++.- ...+.|+++..... .....-.+.|...+|.|.++.++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----------------~V~~~~~~pVhdf~W~p~S~~F~ 290 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-----------------PVEKDLKDPVHDFTWEPLSSRFA 290 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-----------------ceeccccccceeeeecccCCcee
Confidence 3355555443321 13344554442111 11112247899999999998777
Q ss_pred E-E--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---CcEEEEEcCCCc-eeeeecc
Q 007489 292 Y-S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSE-LLHTFTP 364 (601)
Q Consensus 292 ~-~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~~-~~~~~~~ 364 (601)
+ + ....+.+|+++. ... ..++. ..=+.+.|+|.++++++++-+ |.|.+||..... +...+.+
T Consensus 291 vi~g~~pa~~s~~~lr~----Nl~-----~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~ 359 (561)
T COG5354 291 VISGYMPASVSVFDLRG----NLR-----FYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG 359 (561)
T ss_pred EEecccccceeeccccc----ceE-----EecCC--cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec
Confidence 6 3 567788898874 211 12222 233678899999999987765 789999976443 3335554
Q ss_pred CcccccccCCCCCCCeeEEEEccCCCEEEEEe------cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEE
Q 007489 365 CREEHDREIQPSEPPITKMFTSSDGQWLAAVN------CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLII 438 (601)
Q Consensus 365 ~~~~~~~~~~~~~~~i~~l~~spd~~~las~~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~ 438 (601)
...+-+.||||++++.+.. .|..|.|||+.+.... ..+.+.|.| .+++..+
T Consensus 360 -------------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p-~~~~~tt 416 (561)
T COG5354 360 -------------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDP-SGQYVTT 416 (561)
T ss_pred -------------CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---------hhhhccccC-Cccccee
Confidence 2345678999999987654 3778999998765531 466788998 7777766
Q ss_pred EeCCC
Q 007489 439 TTSSN 443 (601)
Q Consensus 439 ~~~dg 443 (601)
.+.+.
T Consensus 417 sSs~~ 421 (561)
T COG5354 417 SSSCP 421 (561)
T ss_pred eccCC
Confidence 66554
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=7.7e-11 Score=101.87 Aligned_cols=304 Identities=11% Similarity=0.157 Sum_probs=181.5
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc------------cceeEEE
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT------------HDVRALT 144 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~ 144 (601)
....|+++.|...|.||++|...|+|.+|.-....- ..+.....+++|. ..|..+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~------------ceykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG------------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccc------------cchhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 346789999999999999999999999997655331 1111223344443 2344444
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC--CcCCCccCC---CCCccce
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT--KFSPHEICP---APQRVPI 219 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~--~~~~~~~~~---~~~~~~~ 219 (601)
|. .+ .+...++..+.|.+|++|.+.... ......... .|...+.
T Consensus 93 w~---------~~----------------------t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~ 141 (460)
T COG5170 93 WF---------DD----------------------TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPL 141 (460)
T ss_pred ee---------cC----------------------CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCc
Confidence 43 11 123477788899999999987632 111111000 0000000
Q ss_pred eeeec---cccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 007489 220 HLVHN---TIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 296 (601)
Q Consensus 220 ~~~~~---~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 296 (601)
..... ...+....+++.. ........|...|.++++..|.+.++++++-
T Consensus 142 ~s~~~l~lprls~hd~iiaa~----------------------------p~rvyaNaH~yhiNSiS~NsD~et~lSaDdL 193 (460)
T COG5170 142 TSTKELLLPRLSEHDEIIAAK----------------------------PCRVYANAHPYHINSISFNSDKETLLSADDL 193 (460)
T ss_pred CCHHHhhcccccccceEEEec----------------------------cceeccccceeEeeeeeecCchheeeeccce
Confidence 00000 0011111111111 0111123466789999999999999999999
Q ss_pred ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCcee----eeeccCcc-ccc
Q 007489 297 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELL----HTFTPCRE-EHD 370 (601)
Q Consensus 297 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~-~~~ 370 (601)
.|.+|++...++.-.+.++....+.....-|++..|+|.. ..+...+..|.|++-|++...+. ..+..... ...
T Consensus 194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 9999999876655555444433334444578899999954 56677788999999999743211 11110000 000
Q ss_pred ccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce-EEEEeecc-----------CCCce---eEEEecCCCCCE
Q 007489 371 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-QHWFISRL-----------EGASV---TAAGFPPQNNNV 435 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~~-----------~~~~v---~~l~~~p~~~~~ 435 (601)
.-.......|..+.|+++|+|+++-+.. +|+|||+...+ ++.+++-+ ....| ..+.|+- |...
T Consensus 274 ~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~ 351 (460)
T COG5170 274 DFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKH 351 (460)
T ss_pred hhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Cccc
Confidence 0111245678999999999999987765 69999997654 34444321 11222 3478888 8888
Q ss_pred EEEEeCCCeEEEEEcCCC
Q 007489 436 LIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 436 l~~~~~dg~v~vwd~~~~ 453 (601)
+++|+..+..-+|-..+.
T Consensus 352 v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 352 VLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred ccccccccceeeeccccC
Confidence 999998888888875543
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=3.8e-08 Score=90.55 Aligned_cols=172 Identities=9% Similarity=0.178 Sum_probs=120.4
Q ss_pred EcCCCCEEEEEcCCccEEEEeecCCCCcceEEEe-----eecCCcCccceeEEE-Ecc-CCCeEEEEecCCcEEEEEcCC
Q 007489 283 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN-----KRQLPRKLQFAHSMI-FSY-DSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 283 ~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~i~-~s~-d~~~l~~~~~dg~i~vwd~~~ 355 (601)
.+.||+.++....|.|.+||..+. ....+++. +...+....+..-+. |++ +|.+++..+ .|...|.+...
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 356899999999999999998761 11212221 011111111222222 444 688888877 46677777654
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC-eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCC
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
+-.++ +. +...|.-..+.-+++-++.|..|| .+-|||.++++.....+.+ +.|.++..+| +|+
T Consensus 351 ~~~iq-v~------------~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l--g~I~av~vs~-dGK 414 (668)
T COG4946 351 GYSIQ-VG------------KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL--GNIEAVKVSP-DGK 414 (668)
T ss_pred CeeEE-cC------------CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc--cceEEEEEcC-CCc
Confidence 43332 22 566688888888888999999999 8999999999876554433 5899999999 999
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccc-cCCCcEEEEEeCCC
Q 007489 435 VLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ-EFPGEVIGLSFSPS 485 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~ 485 (601)
+++++....+|.+.|++++.... .. ..-+-|+++.|+|+
T Consensus 415 ~~vvaNdr~el~vididngnv~~------------idkS~~~lItdf~~~~n 454 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRL------------IDKSEYGLITDFDWHPN 454 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeE------------ecccccceeEEEEEcCC
Confidence 99999999999999999997422 21 23367999999998
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=7.5e-09 Score=101.41 Aligned_cols=274 Identities=16% Similarity=0.150 Sum_probs=161.0
Q ss_pred CCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCcccccee
Q 007489 48 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 127 (601)
Q Consensus 48 ~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 127 (601)
+++++.++.+|.|..+|..+|+.+..+.........+. .++..++.++.++.+..+|..+++. .|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~-------------~W 129 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKE-------------LW 129 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcE-------------ee
Confidence 55888999999999999999998866553332112222 2577888888999999999988873 34
Q ss_pred EEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCC
Q 007489 128 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP 207 (601)
Q Consensus 128 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~ 207 (601)
.... ...+.+.... .+ ..++.+..++.|..+|.++.+.
T Consensus 130 ~~~~-----~~~~~~~p~v---------~~-------------------------~~v~v~~~~g~l~a~d~~tG~~--- 167 (377)
T TIGR03300 130 RAKL-----SSEVLSPPLV---------AN-------------------------GLVVVRTNDGRLTALDAATGER--- 167 (377)
T ss_pred eecc-----CceeecCCEE---------EC-------------------------CEEEEECCCCeEEEEEcCCCce---
Confidence 3211 1111110000 11 2677778889999999876332
Q ss_pred CccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 007489 208 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 287 (601)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 287 (601)
+|......... ... .. .+..+ .++
T Consensus 168 -----------------------------------~W~~~~~~~~~---------------~~~----~~-~sp~~-~~~ 191 (377)
T TIGR03300 168 -----------------------------------LWTYSRVTPAL---------------TLR----GS-ASPVI-ADG 191 (377)
T ss_pred -----------------------------------eeEEccCCCce---------------eec----CC-CCCEE-ECC
Confidence 22222111000 000 00 00011 123
Q ss_pred CEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCc--cceeEEEEcc--CCCeEEEEecCCcEEEEEcCCCceeeeec
Q 007489 288 MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSY--DSSQLIIAGHDRRIYVVDVSSSELLHTFT 363 (601)
Q Consensus 288 ~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~s~--d~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 363 (601)
.+++...++.+..+|+.+ +..+|+.......+.. .....+.-+| .+..+++++.+|.++.||..+|+.+....
T Consensus 192 ~v~~~~~~g~v~ald~~t---G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQT---GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred EEEEECCCCEEEEEEccC---CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 333334566777777664 5566654321111100 0000011111 34578888889999999999998776554
Q ss_pred cCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCC
Q 007489 364 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 443 (601)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg 443 (601)
. . . ...+. .++..++.++.+|.|+.+|..+++..+...........+... .+..|++++.+|
T Consensus 269 ~-----------~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G 330 (377)
T TIGR03300 269 A-----------S-S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEG 330 (377)
T ss_pred c-----------C-C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCC
Confidence 2 1 1 11222 256788888899999999999998877654333222333333 346889999999
Q ss_pred eEEEEEcCCCCc
Q 007489 444 QVYVFDVEAKQL 455 (601)
Q Consensus 444 ~v~vwd~~~~~~ 455 (601)
.|+++|..+++.
T Consensus 331 ~l~~~d~~tG~~ 342 (377)
T TIGR03300 331 YLHWLSREDGSF 342 (377)
T ss_pred EEEEEECCCCCE
Confidence 999999998875
No 270
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.24 E-value=3e-08 Score=97.45 Aligned_cols=316 Identities=15% Similarity=0.182 Sum_probs=179.9
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCC-CCC-CCceEEEE-EEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGG-LGS-GPELCIWS-LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~-~h~~~V~~-v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
|++++.+|.|.-+|..+|+.+.+....... ... .+...+.+ +.. .++.++.++.+|.+.-+|.++|+.+.+.....
T Consensus 72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 567788899999999999999887643210 000 00001111 111 24578888899999999999999887766432
Q ss_pred cceEE-EEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc-cceeEEEeeccccCCCCCC
Q 007489 79 GDVNA-LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLP 156 (601)
Q Consensus 79 ~~V~~-l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~ 156 (601)
.+.+ ... .+..++.+..++.+..+|..+++. .|.......... ....+-.+ .
T Consensus 151 -~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-------------~W~~~~~~~~~~~~~~~sP~v----------~ 204 (394)
T PRK11138 151 -EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-------------KWTVNLDVPSLTLRGESAPAT----------A 204 (394)
T ss_pred -ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-------------eeeecCCCCcccccCCCCCEE----------E
Confidence 2221 122 245677778899999999999873 454322100000 00000000 0
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
+ ..++.++.++.+..+|..+.+..
T Consensus 205 ~-------------------------~~v~~~~~~g~v~a~d~~~G~~~------------------------------- 228 (394)
T PRK11138 205 F-------------------------GGAIVGGDNGRVSAVLMEQGQLI------------------------------- 228 (394)
T ss_pred C-------------------------CEEEEEcCCCEEEEEEccCChhh-------------------------------
Confidence 1 25666778888888887763321
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEe
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
|......... .. .+.++......++ + .++..++.+.++.+..+|..+ +..+|+..
T Consensus 229 -------W~~~~~~~~~------~~----~~~~~~~~~~sP~----v-~~~~vy~~~~~g~l~ald~~t---G~~~W~~~ 283 (394)
T PRK11138 229 -------WQQRISQPTG------AT----EIDRLVDVDTTPV----V-VGGVVYALAYNGNLVALDLRS---GQIVWKRE 283 (394)
T ss_pred -------heeccccCCC------cc----chhcccccCCCcE----E-ECCEEEEEEcCCeEEEEECCC---CCEEEeec
Confidence 2111000000 00 0000000000111 1 134455557778888888875 77778643
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
. .. ...+. .++..+++++.+|.+..+|..+|+.+...... ......+... .+.+|+.++
T Consensus 284 ~---~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 284 Y---GS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------LHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred C---CC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc----------CCCcccCCEE--ECCEEEEEe
Confidence 2 11 11122 24667888889999999999999876544321 0111222222 356788899
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCcee-EEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
.+|.|+++|..+++..+...... ..+. ...+. +..|++++.||.|+.+++
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDS-SGFLSEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCC-CcceeCCEEE---CCEEEEEeCCceEEEEeC
Confidence 99999999999999887765422 2222 22332 347889999999998875
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.7e-09 Score=101.86 Aligned_cols=277 Identities=10% Similarity=0.046 Sum_probs=176.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc---------------hhhhccccccceEEEEEeCCCCEEEEEee
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT---------------LLQAHSFHKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
.......|+.|+... +|+.|+.||.++|-.+.+.+ .-+++.||.+.|.-+.|+.+.+.|-|...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345678999999766 99999999999999875432 23678899999999999999999999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
+|.|.+|-+-.+. |..-..-....+-|.+++|. .||.
T Consensus 92 ~GlIiVWmlykgs---------------W~EEMiNnRnKSvV~SmsWn---------~dG~------------------- 128 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGS---------------WCEEMINNRNKSVVVSMSWN---------LDGT------------------- 128 (1189)
T ss_pred CceEEEEeeeccc---------------HHHHHhhCcCccEEEEEEEc---------CCCc-------------------
Confidence 9999999998865 43323333346678899997 7776
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
.+...-.||.|.+=.+.. -+||.-...
T Consensus 129 -----kIcIvYeDGavIVGsvdG---------------------------------------NRIwgKeLk--------- 155 (1189)
T KOG2041|consen 129 -----KICIVYEDGAVIVGSVDG---------------------------------------NRIWGKELK--------- 155 (1189)
T ss_pred -----EEEEEEccCCEEEEeecc---------------------------------------ceecchhcc---------
Confidence 666666777665544332 122321100
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC----CcceEEEeeecCCcCccceeEEEE-
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV----GQGEWIINKRQLPRKLQFAHSMIF- 332 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~- 332 (601)
......+.|++|.+.+.. -..|.+.+||...+-. ..+..... ..+......|..+.|
T Consensus 156 ----------------g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t-g~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 156 ----------------GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGT-GIFSNFPTKIAEIEWN 218 (1189)
T ss_pred ----------------hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeee-eeecCCCccccceeec
Confidence 012335667777766655 3667777777653100 00110010 011111112333433
Q ss_pred -------ccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC------
Q 007489 333 -------SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG------ 399 (601)
Q Consensus 333 -------s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg------ 399 (601)
-||...|+++-.+|.+.|..-.+...-..+. ..-.+..+.|+++|..||.++.+.
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d------------tgm~~vgakWnh~G~vLAvcG~~~da~~~~ 286 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD------------TGMKIVGAKWNHNGAVLAVCGNDSDADEPT 286 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe------------cccEeecceecCCCcEEEEccCcccccCcc
Confidence 2577889999999999887654333222232 345688999999999999887642
Q ss_pred ---eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEE
Q 007489 400 ---DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 400 ---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
.|++|..- |+...++.. .+..|++++|-. .+-.++.+
T Consensus 287 d~n~v~Fysp~-G~i~gtlkv-pg~~It~lsWEg-~gLriA~A 326 (1189)
T KOG2041|consen 287 DSNKVHFYSPY-GHIVGTLKV-PGSCITGLSWEG-TGLRIAIA 326 (1189)
T ss_pred ccceEEEeccc-hhheEEEec-CCceeeeeEEcC-CceEEEEE
Confidence 45555533 333445553 457899999976 55444433
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=3.6e-07 Score=97.56 Aligned_cols=371 Identities=14% Similarity=0.135 Sum_probs=203.7
Q ss_pred eEEEEEEEeeCC---eEEEEcCCC--cEEEeeCCccc---hhhhcc-----ccccceEEEEEeCCCCEEEEEeeCCeEEE
Q 007489 38 LCIWSLLSLRCG---TLVSADSTG--SVQFWDSRHGT---LLQAHS-----FHKGDVNALAAAPSHNRVFSTGSDGQVIL 104 (601)
Q Consensus 38 ~~V~~v~~s~~g---~l~s~~~dg--~i~vwd~~~~~---~~~~~~-----~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 104 (601)
..+...+|.+.. +++++.... .|.+-...... .+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 346666666554 334443333 34443333222 222332 24578999999999999999999999999
Q ss_pred E----EeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccC
Q 007489 105 Y----KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 180 (601)
Q Consensus 105 w----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (601)
. +..... ......-...|.+++|+ ||+.
T Consensus 102 ~~~~~~~~~~~------------------~E~VG~vd~GI~a~~WS---------PD~E--------------------- 133 (928)
T PF04762_consen 102 VREDPDPDEDE------------------IEIVGSVDSGILAASWS---------PDEE--------------------- 133 (928)
T ss_pred EEccCCCCCce------------------eEEEEEEcCcEEEEEEC---------CCcC---------------------
Confidence 9 444433 12222336789999999 9987
Q ss_pred CCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCC
Q 007489 181 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGG 260 (601)
Q Consensus 181 ~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~ 260 (601)
.|+....+++|.+.. +++..+........... ....-++-|. ..+...-...|
T Consensus 134 ---lla~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~--~~~~VsVGWG---------------------kKeTQF~Gs~g 186 (928)
T PF04762_consen 134 ---LLALVTGEGNLLLMT-RDFDPISEVPLDSDDFG--ESKHVSVGWG---------------------KKETQFHGSAG 186 (928)
T ss_pred ---EEEEEeCCCEEEEEe-ccceEEEEeecCccccC--CCceeeeccC---------------------cccCccCcchh
Confidence 888887788777664 22221111111000000 0000011111 00000000001
Q ss_pred CCC------cce--EEEEEecCCCCeEEEEEcCCCCEEEEE----cC---CccEEEEeecCCCCcceEEEeeecCCcCcc
Q 007489 261 HAS------TSL--LVQVKSKASRKIICSTISNSGMLFAYS----DH---VKPSLFELKKGKVGQGEWIINKRQLPRKLQ 325 (601)
Q Consensus 261 ~~~------~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~---~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (601)
... +.. +.+-....+..-..++|-.||+++|++ .. ..+|+|+-+ |. + +.......+
T Consensus 187 K~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----G~-L-~stSE~v~g--- 257 (928)
T PF04762_consen 187 KAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----GE-L-QSTSEPVDG--- 257 (928)
T ss_pred hhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC----ce-E-EeccccCCC---
Confidence 100 000 000011134567789999999999984 12 356677654 22 1 111112222
Q ss_pred ceeEEEEccCCCeEEEEec---CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 326 FAHSMIFSYDSSQLIIAGH---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
--.+++|.|.|++||+... ...|.+|.- +|-.-..|.-.. ......|..++|++|+..||..-.|. |.
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~-------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vq 328 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF-------DPEEEKVIELAWNSDSEILAVWLEDR-VQ 328 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC-------CCCCceeeEEEECCCCCEEEEEecCC-ce
Confidence 2357899999999998775 345778874 455444444321 01466799999999999999977665 99
Q ss_pred EEEcCCceEE--EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc----CCC-------------------Cccc
Q 007489 403 IFNLEIQRQH--WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV----EAK-------------------QLGE 457 (601)
Q Consensus 403 iwd~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~----~~~-------------------~~~~ 457 (601)
+|-..+.... ..+.-.....+..+.|+|.+...|.+.+.+|.+..+++ ..+ .+++
T Consensus 329 LWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp 408 (928)
T PF04762_consen 329 LWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP 408 (928)
T ss_pred EEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence 9988765421 12221122345569999966677888877677665553 211 1223
Q ss_pred chhcccCCcCccc----ccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeCCC
Q 007489 458 WSMQHTFVLPRRY----QEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDFGR 506 (601)
Q Consensus 458 ~~~~~~~~~~~~~----~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~~~ 506 (601)
+.... .|-.+ ......|.+++|+++ ...+.+. ....+.++.+..
T Consensus 409 f~~a~---VPPPMs~~~l~~~~~v~~vaf~~~--~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 409 FRRAV---VPPPMSSYELELPSPVNDVAFSPS--NSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ccccC---CCchHhceEEcCCCCcEEEEEeCC--CCeEEEEECCCCEEEEEecC
Confidence 22221 11111 123578999999998 3334444 445477777544
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=4.2e-09 Score=92.73 Aligned_cols=256 Identities=14% Similarity=0.166 Sum_probs=173.0
Q ss_pred cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeec
Q 007489 68 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 147 (601)
Q Consensus 68 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 147 (601)
..++..++||.+.|+....-|...-+++.+.|.++++|--+... +.|..+. ..-...++++.+.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-------------q~wpsI~--~~mP~~~~~~~y~- 77 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-------------QYWPSIY--HYMPSPCSAMEYV- 77 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-------------ccCchhh--hhCCCCceEeeee-
Confidence 34667889999999999999988899999999999999654422 1232222 1225567777776
Q ss_pred cccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecccc-CCcCCCccCCCCCccceeeeeccc
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF-TKFSPHEICPAPQRVPIHLVHNTI 226 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 226 (601)
++.. .|+.|-..|++.-+..... .+.
T Consensus 78 --------~e~~------------------------~L~vg~~ngtvtefs~sedfnkm--------------------- 104 (404)
T KOG1409|consen 78 --------SESR------------------------RLYVGQDNGTVTEFALSEDFNKM--------------------- 104 (404)
T ss_pred --------ccce------------------------EEEEEEecceEEEEEhhhhhhhc---------------------
Confidence 5544 8888888888877765430 000
Q ss_pred cCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecC
Q 007489 227 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG 306 (601)
Q Consensus 227 ~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~ 306 (601)
...+....|...+..+.|+....++++..-.+-..|.....
T Consensus 105 ---------------------------------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 105 ---------------------------------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred ---------------------------------------chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 11223334567777888877777777743333344444321
Q ss_pred CCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc--CCCceeeeeccCcccccccCCCCCCCeeEEE
Q 007489 307 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV--SSSELLHTFTPCREEHDREIQPSEPPITKMF 384 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 384 (601)
+..+ ....+.. ..+++.+.-. +...|...|.|.+..+ ....++.++.+ |.+.+.+++
T Consensus 146 --~~~l---g~Y~~~~---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-----------h~~~~~~l~ 204 (404)
T KOG1409|consen 146 --GNRL---GGYNFET---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNG-----------HTGEVTCLK 204 (404)
T ss_pred --CCcc---cceEeec---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcC-----------cccceEEEE
Confidence 2211 0000000 1111111111 5566777777777665 33457778888 999999999
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 385 TSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 385 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
|.|..+.|.+|..|..|.+||+...+-.......|...|..+...+ .-+.|++++.||.|.+|+++..
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccce
Confidence 9999999999999999999999877765555556667888888888 7889999999999999998754
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.4e-09 Score=102.82 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=132.0
Q ss_pred CCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEE--------------------ccCCCeEEEEe
Q 007489 285 NSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF--------------------SYDSSQLIIAG 343 (601)
Q Consensus 285 ~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--------------------s~d~~~l~~~~ 343 (601)
|...++|. ..+|.+++|+...+.-.+.. .......+..++..| +.|-..++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~-----~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEF-----APIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeee-----ccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 44577888 68999999998762111111 111111112222222 12334688889
Q ss_pred cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCce
Q 007489 344 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASV 423 (601)
Q Consensus 344 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 423 (601)
..|.|.+|++..++....+.... |.+.|+++.++.+-..|.+++.|+.+..|+....+..+..... ...+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~---------h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~ 147 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDK---------HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLV 147 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCC---------CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCcc
Confidence 99999999999999988888543 9999999999999999999999999999999999887665543 3578
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 424 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.+++.+| |+..|++++ ++|.+||+++++. ...|.+|.++|..++|-.+
T Consensus 148 ~sl~is~-D~~~l~~as--~~ik~~~~~~kev-----------v~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 148 SSLCISP-DGKILLTAS--RQIKVLDIETKEV-----------VITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ceEEEcC-CCCEEEecc--ceEEEEEccCceE-----------EEEecCCCcceEEEEEEEe
Confidence 9999999 999999886 7899999999985 6689999999999999765
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=7e-08 Score=90.62 Aligned_cols=339 Identities=12% Similarity=0.163 Sum_probs=196.3
Q ss_pred eEEEEcCCCc--EEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCcccccee
Q 007489 50 TLVSADSTGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 127 (601)
Q Consensus 50 ~l~s~~~dg~--i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 127 (601)
++++....+. ..+|+.........-....=.-+-+.|||-|.||+|--.- -|.+|--..-.
T Consensus 180 Qf~v~~d~~~~~svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~---------------- 242 (698)
T KOG2314|consen 180 QFVVQDDVKTTVSVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQ-GIALWGGESFD---------------- 242 (698)
T ss_pred eEEEEecCcceeEEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEecc-ceeeecCccHH----------------
Confidence 3444443333 6678766433222111112233678999999999987654 47888543321
Q ss_pred EEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC----------C-CeEEE
Q 007489 128 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD----------D-TKLFA 196 (601)
Q Consensus 128 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----------d-~~v~~ 196 (601)
.. ....| ..|.-+.|+ |+.+ +|++-+. + ..+++
T Consensus 243 -r~-~RF~H-p~Vq~idfS---------P~Ek------------------------YLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 243 -RI-QRFYH-PGVQFIDFS---------PNEK------------------------YLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred -HH-HhccC-CCceeeecC---------Cccc------------------------eEEEecCCccccCcccCCCceEEE
Confidence 11 22233 367888888 8887 6665442 2 38999
Q ss_pred EeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC-CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCC
Q 007489 197 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 275 (601)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (601)
||+.++...........+ ...-.-+.||.|.+++|.-. ..+.|+....-. +...+.-..
T Consensus 287 WDI~tG~lkrsF~~~~~~----~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~----------------lld~Kslki 346 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP----YLKWPIFRWSHDDKYFARMTGNSISIYETPSFM----------------LLDKKSLKI 346 (698)
T ss_pred EEccccchhcceeccCCC----ccccceEEeccCCceeEEeccceEEEEecCcee----------------eecccccCC
Confidence 999987655544432111 11222345888999888754 788888755321 112222224
Q ss_pred CCeEEEEEcCCCCEEEE-E--cCC---ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-----
Q 007489 276 RKIICSTISNSGMLFAY-S--DHV---KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH----- 344 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~--~~~---~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~----- 344 (601)
..|....|+|.+++||. . .+. .+.|..+.. .+.+ ....+ +.-.-..+-|-.+|.+|+.--.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---~~~i---Rt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---KREI---RTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCcceEEEEecCc---ccee---eeccc--eeeeccEEEeccCCcEEEEEEEeeccc
Confidence 67889999999999998 3 221 233333332 2221 11111 1112245677788888876332
Q ss_pred --C---CcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec---CCeEEEEEcCC-ceEEEE
Q 007489 345 --D---RRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEI-QRQHWF 414 (601)
Q Consensus 345 --d---g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~---dg~i~iwd~~~-~~~~~~ 414 (601)
. ..+.|+.+.... ++..+. ....|...+|-|.|..+++-+. ..++.+|.+++ ......
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~ve------------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVE------------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeee------------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 1 124455554332 222222 5677999999999998776543 35789998873 332223
Q ss_pred eeccCCCceeEEEecCCCCCEEEEEe---CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEE
Q 007489 415 ISRLEGASVTAAGFPPQNNNVLIITT---SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSV 491 (601)
Q Consensus 415 ~~~~~~~~v~~l~~~p~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~ 491 (601)
+..+.....+.+.|+| .|++++++. ..|.+..+|..-..+..- ....| ...+.+.|.|. +..+
T Consensus 487 Vk~~dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~----------~~~eh-~~at~veWDPt--GRYv 552 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDT----------ASPEH-FAATEVEWDPT--GRYV 552 (698)
T ss_pred hhhhcccccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhc----------cCccc-cccccceECCC--CCEE
Confidence 3334445678899999 999998874 468899999885332110 01122 35678899998 4555
Q ss_pred EEEc
Q 007489 492 IIYS 495 (601)
Q Consensus 492 ~~~~ 495 (601)
..++
T Consensus 553 vT~s 556 (698)
T KOG2314|consen 553 VTSS 556 (698)
T ss_pred EEee
Confidence 5443
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=2.6e-08 Score=84.75 Aligned_cols=239 Identities=11% Similarity=-0.011 Sum_probs=154.7
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
+|+.||.-|.+.+|...+.+...... .....-...+...+-+.-...+++.+.++++..+.......
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~c---d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---------- 152 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQC---DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---------- 152 (344)
T ss_pred EEEeccccceeeeecccCcccceeee---cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc----------
Confidence 89999999999999888644221111 00111112233333444456677777888888776443221
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 264 TSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
...-.+-.+.++++++|++++++ ++...|-.|.++. .+..+.. .........-.+..|+.....+|++
T Consensus 153 ------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~--~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 153 ------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD--ESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred ------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC--ccceeee---eEecccCCCceeeeeccCcceEEEE
Confidence 11111134789999999999999 8888999999986 3444322 2222333344678899999999999
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC--EEEEEecCCeEEEEEcCCceEEEEeeccC-
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQRQHWFISRLE- 419 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~--~las~~~dg~i~iwd~~~~~~~~~~~~~~- 419 (601)
..||++.|||++.......+... ....|.+.+..+.|++-|. +|...-.-+.+++.|+.+++....+.-..
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~ss------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISS------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred ecCCcEEEEEecccccchhhhcc------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 99999999999765433222211 1122899999999998664 56666677889999999887665543222
Q ss_pred ------CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 420 ------GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 420 ------~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
...|..-.|+. ++.-+.+.+++. +.-|++.++.
T Consensus 296 ~~~~~~tq~ifgt~f~~-~n~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNN-ENESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred ccccccccccccccccC-CCcccccccchh-hheeeccccc
Confidence 12366777777 666666666553 6777776654
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=8.3e-08 Score=104.36 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=59.8
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc------------CCCceeEEEecCCCCCEEEEEeCCCeEEE
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL------------EGASVTAAGFPPQNNNVLIITTSSNQVYV 447 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~~~p~~~~~l~~~~~dg~v~v 447 (601)
...++++++|+++++-..+++|++||..++......... .-..+..|++++ +++++++-+.++.|++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEE
Confidence 468999999998888889999999999887765332211 012578899999 9998888888999999
Q ss_pred EEcCCCCc
Q 007489 448 FDVEAKQL 455 (601)
Q Consensus 448 wd~~~~~~ 455 (601)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=1.1e-09 Score=98.55 Aligned_cols=160 Identities=13% Similarity=0.176 Sum_probs=111.9
Q ss_pred CeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE---
Q 007489 277 KIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD--- 352 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd--- 352 (601)
....+..++.++++|++ .+....++++..+.++.++++.. ..+. .-+++.|..+.....++..-|.++-+|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~---~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPK---RPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--eccc---CcceeeeeeccceEEEEeecCCceeeeeec
Confidence 34456678889999995 44455588887644434443322 2222 224555555555655555555555444
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 432 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~ 432 (601)
...+.+... -+ |-..++.++||||+++|++++.|..|+|-.......+..+...|..-|..++.-+
T Consensus 139 ~~~~~~~~~-lG-----------hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-- 204 (390)
T KOG3914|consen 139 ADSGRCEPI-LG-----------HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-- 204 (390)
T ss_pred ccccCcchh-hh-----------hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--
Confidence 333433322 23 8899999999999999999999999999988776665556655777899999986
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCc
Q 007489 433 NNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+..|++++.|++|++||+.+++.
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred CceeeecCCCCcEEEEecccCCc
Confidence 56799999999999999999874
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=2.4e-10 Score=120.69 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=146.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.+-..|.++.-+|.. ..++|+.||.|++|....++.+..++ .-.+.|+.+.|+.+|+.+..+..||.+.+|.....-
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc-
Confidence 345567888778888 89999999999999999888887765 234899999999999999999999999999987422
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
....+.|......+.|- . ..+++++..
T Consensus 2285 -----------------~~s~qchnk~~~Df~Fi---------~--------------------------s~~~tag~s- 2311 (2439)
T KOG1064|consen 2285 -----------------YTSWQCHNKALSDFRFI---------G--------------------------SLLATAGRS- 2311 (2439)
T ss_pred -----------------eeccccCCccccceeee---------e--------------------------hhhhccccC-
Confidence 33444555554444442 0 022222211
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
T Consensus 2312 -------------------------------------------------------------------------------- 2311 (2439)
T KOG1064|consen 2312 -------------------------------------------------------------------------------- 2311 (2439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 273 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
..++.+.+||.... + ..|-+. ..|.+.++++++.|..+.|++|+.+|.|++||
T Consensus 2312 --------------------~d~~n~~lwDtl~~--~-~~s~v~----~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2312 --------------------SDNRNVCLWDTLLP--P-MNSLVH----TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred --------------------CCCCcccchhcccC--c-ccceee----eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 12334445544331 1 111121 56778899999999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE 419 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~ 419 (601)
++..+++++++. +. ...++++|+..|.|+||++........++..|
T Consensus 2365 ~rqrql~h~~~~--------------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA--------------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred hHHHHHHHHhhh--------------------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 998888776652 33 55689999999999999999887766665444
No 280
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.7e-09 Score=97.54 Aligned_cols=144 Identities=11% Similarity=0.201 Sum_probs=115.7
Q ss_pred CEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCc
Q 007489 288 MLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR 366 (601)
Q Consensus 288 ~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 366 (601)
..++-| ..|.|.+|+... +...|. ..-..|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+..
T Consensus 71 ~~lvlgt~~g~v~~ys~~~---g~it~~---~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-- 142 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAG---GEITAK---LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-- 142 (541)
T ss_pred eEEEeecCCccEEEEEecC---CeEEEE---EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc--
Confidence 344444 677888888875 444333 33456788999999999999999999999999999999999999988
Q ss_pred ccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCC-----CCEEEE-Ee
Q 007489 367 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN-----NNVLII-TT 440 (601)
Q Consensus 367 ~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-----~~~l~~-~~ 440 (601)
.+..+.+++.+|||+.|++++. .|++||+++++....++. |+++|.+++|.. + |.++++ ..
T Consensus 143 ---------~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~-~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 143 ---------QKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTG-HGSPVRTLSFTT-LIDGIIGKYVLSSAA 209 (541)
T ss_pred ---------CCCccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecC-CCcceEEEEEEE-eccccccceeeeccc
Confidence 6788999999999999998864 699999999999888875 678999999987 5 455554 45
Q ss_pred CCCeEEEEEcCC
Q 007489 441 SSNQVYVFDVEA 452 (601)
Q Consensus 441 ~dg~v~vwd~~~ 452 (601)
.+.-+.+|-++.
T Consensus 210 ~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 210 AERGITVWVVEK 221 (541)
T ss_pred cccceeEEEEEc
Confidence 566788887765
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1e-08 Score=93.57 Aligned_cols=305 Identities=14% Similarity=0.141 Sum_probs=198.0
Q ss_pred CCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCc--c-chhhhccccccceEEEEEeCCCCEEEEEee-CCeEEEEEeccC
Q 007489 35 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH--G-TLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCE 110 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~--~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~ 110 (601)
-|.+.|+.+..+....+++++.||.+++|--.. | +.+..+..|.+.|.+++.+.++..+.|.+. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 488889998887777999999999999997653 2 455677889999999999999999999777 999999999875
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
.. ...+.. ..-...+.|.. ++...+ ..+-++.-.
T Consensus 87 Dm-----------------inmiKL-~~lPg~a~wv~-------skGd~~---------------------s~IAVs~~~ 120 (558)
T KOG0882|consen 87 DM-----------------INMIKL-VDLPGFAEWVT-------SKGDKI---------------------SLIAVSLFK 120 (558)
T ss_pred ch-----------------hhhccc-ccCCCceEEec-------CCCCee---------------------eeEEeeccc
Confidence 43 111100 00001111110 011110 013344455
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
++.+.++|...... ...-.
T Consensus 121 sg~i~VvD~~~d~~-------------------------------------------------------------q~~~f 139 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFC-------------------------------------------------------------QDGYF 139 (558)
T ss_pred CCCcEEECCcCCcC-------------------------------------------------------------cccee
Confidence 66777877553110 11122
Q ss_pred EecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecC---CCCcceEEEeee----cCCcCccceeEEEEccCCCeEEEE
Q 007489 271 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKG---KVGQGEWIINKR----QLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~---~~~~~~~~~~~~----~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
..-|..+|.++.+++-+..+++ ...|.|.-|..... ......|.+... .++.......++.|+|++..+.+-
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 2334577888888888887777 46788999987620 012222322221 122223456899999999999999
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccc---------------------cccCCCCCC-CeeEEEEccCCCEEEEEecCCe
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEH---------------------DREIQPSEP-PITKMFTSSDGQWLAAVNCFGD 400 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~i~~l~~spd~~~las~~~dg~ 400 (601)
+.|..|+++++.+|++++.+....... +.++..|.. .-+.+.|...|++|+.|+--|
T Consensus 220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 999999999999998877665422110 122333333 345688999999999998887
Q ss_pred EEEEEcCCceEEEEeeccCCC------------------------ceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 401 VYIFNLEIQRQHWFISRLEGA------------------------SVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 401 i~iwd~~~~~~~~~~~~~~~~------------------------~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
|+|.++.++...+.+.....- .--.+.+.+ |..++.++-.-+.+++|
T Consensus 299 ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-CCeEEEeeeecceEEEE
Confidence 999999998877665332100 001233556 77777777788889998
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=2.3e-08 Score=86.34 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=90.6
Q ss_pred EEEEEEeeCC-eEEEEcCCCcEEEeeCCccch--hhhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCC
Q 007489 40 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPN 115 (601)
Q Consensus 40 V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~--~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~ 115 (601)
-.++.|++.+ .++++.++|.+.+-+.....+ ++.++.|.-+++...|+. +.+.+++||.|+.+..||++....
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence 4567788888 899999999999766655544 358899999999999987 457888999999999999993221
Q ss_pred CCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEE
Q 007489 116 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 195 (601)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~ 195 (601)
|. -...+.|...|.++.-++ |.+ ..+++|+.|..|+
T Consensus 201 -----------~i-~~n~kvH~~GV~SI~ss~--------~~~------------------------~~I~TGsYDe~i~ 236 (339)
T KOG0280|consen 201 -----------FI-WHNSKVHTSGVVSIYSSP--------PKP------------------------TYIATGSYDECIR 236 (339)
T ss_pred -----------ee-eecceeeecceEEEecCC--------CCC------------------------ceEEEecccccee
Confidence 11 123567888898888652 222 4999999999999
Q ss_pred EEeccccC
Q 007489 196 AYCANEFT 203 (601)
Q Consensus 196 ~~~~~~~~ 203 (601)
+||.+...
T Consensus 237 ~~DtRnm~ 244 (339)
T KOG0280|consen 237 VLDTRNMG 244 (339)
T ss_pred eeehhccc
Confidence 99998643
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=3.4e-08 Score=85.86 Aligned_cols=274 Identities=13% Similarity=0.166 Sum_probs=160.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc-----hhhhccccc------------cceEEEEEeCCC--CEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-----LLQAHSFHK------------GDVNALAAAPSH--NRVF 94 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~~~--~~l~ 94 (601)
.....|++|.|...| +|++|+..|.|.++.-.... ....+++|. ..|..+.|..++ ..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 356789999999999 99999999999999765322 233455554 358888987654 3566
Q ss_pred EEeeCCeEEEEEeccCcCCCCC--------------C--------CCCccccceeEEecCc----cccccceeEEEeecc
Q 007489 95 STGSDGQVILYKASCESIGPND--------------G--------LSSSEVIKKWIYVGSV----RAHTHDVRALTVAVP 148 (601)
Q Consensus 95 s~~~dg~i~vw~~~~~~~~~~~--------------~--------~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~ 148 (601)
..+.|.+|++|.+......... . +..-......++.... ..|.-.+.++.+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-- 181 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-- 181 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence 6778999999998765321100 0 0000011111111111 3455566666664
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCC-cCCCccCCCCCccceeeeecccc
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK-FSPHEICPAPQRVPIHLVHNTIF 227 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 227 (601)
.|.+ .++ ...|-.|.+|++.-... +....+.+.........+++..|
T Consensus 182 -------sD~e------------------------t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeF 229 (460)
T COG5170 182 -------SDKE------------------------TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEF 229 (460)
T ss_pred -------Cchh------------------------eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhccc
Confidence 3332 444 45667899998875321 11111111222233456677788
Q ss_pred CCCeE--EEEE-eCCeeEEeeccccCCcccCCCCCCCCCcceEEEE---------EecCCCCeEEEEEcCCCCEEEEEcC
Q 007489 228 SHTSL--LLVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLVQV---------KSKASRKIICSTISNSGMLFAYSDH 295 (601)
Q Consensus 228 ~~~~~--~l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~s~~g~~l~~~~~ 295 (601)
+|..- ++.+ ..|.|++-+++...--. +++.+... ...-...|..+.|+++|+++++-+-
T Consensus 230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcd---------n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 230 HPEMCNVFMYSSSKGEIKLNDLRQSALCD---------NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred CHhHcceEEEecCCCcEEehhhhhhhhcc---------CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 88543 3333 33899999887432111 00011111 1111356888999999999999888
Q ss_pred CccEEEEeecCCCCcceEEEeee-----cCCc--Ccc---ceeEEEEccCCCeEEEEecCCcEEEEEc
Q 007489 296 VKPSLFELKKGKVGQGEWIINKR-----QLPR--KLQ---FAHSMIFSYDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 296 ~~v~l~~~~~~~~~~~~~~~~~~-----~~~~--~~~---~v~~i~~s~d~~~l~~~~~dg~i~vwd~ 353 (601)
.++++||.+... .++..+... .+.. ... .-..+.||-|.+.+++|+..+..-+|-.
T Consensus 301 ltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 301 LTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 999999998732 232212110 0000 011 1245788999999999999888888874
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.00 E-value=4.3e-07 Score=89.34 Aligned_cols=273 Identities=15% Similarity=0.161 Sum_probs=157.2
Q ss_pred CCeEEEEcCCCcEEEeeCCccchhhhccccc--c--------ceE-EEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC
Q 007489 48 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK--G--------DVN-ALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 116 (601)
Q Consensus 48 ~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~--~--------~V~-~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 116 (601)
+++++.++.+|.+.-+|..+|+.+-+..... . .+. .+.. ++..++.++.++.+..+|..+++.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~---- 142 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEV---- 142 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCC----
Confidence 5588888889999999999998775543211 0 000 0111 456788888899999999998874
Q ss_pred CCCCccccceeEEecCccccccceeE-EEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEE
Q 007489 117 GLSSSEVIKKWIYVGSVRAHTHDVRA-LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 195 (601)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~ 195 (601)
.|.... . ..+.+ ..+ .+ ..++.+..++.|.
T Consensus 143 ---------~W~~~~----~-~~~~ssP~v----------~~-------------------------~~v~v~~~~g~l~ 173 (394)
T PRK11138 143 ---------AWQTKV----A-GEALSRPVV----------SD-------------------------GLVLVHTSNGMLQ 173 (394)
T ss_pred ---------cccccC----C-CceecCCEE----------EC-------------------------CEEEEECCCCEEE
Confidence 343221 1 11111 111 11 2677777888999
Q ss_pred EEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCC
Q 007489 196 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (601)
.+|..+.+. +|......... ... ...
T Consensus 174 ald~~tG~~--------------------------------------~W~~~~~~~~~---------------~~~-~~~ 199 (394)
T PRK11138 174 ALNESDGAV--------------------------------------KWTVNLDVPSL---------------TLR-GES 199 (394)
T ss_pred EEEccCCCE--------------------------------------eeeecCCCCcc---------------ccc-CCC
Confidence 999876432 23322110000 000 000
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCc--cceeEEEEcc--CCCeEEEEecCCcEEEE
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSY--DSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~s~--d~~~l~~~~~dg~i~vw 351 (601)
.++ +. ++..++...++.+..++..+ +..+|+.......+.. .....+..+| .+..+++++.+|.+..+
T Consensus 200 sP~----v~-~~~v~~~~~~g~v~a~d~~~---G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 200 APA----TA-FGGAIVGGDNGRVSAVLMEQ---GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred CCE----EE-CCEEEEEcCCCEEEEEEccC---ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 111 11 23334445666776666654 6666754321111000 0011111122 24567778889999999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCC
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 431 (601)
|..+|+.+..... .. ...+.. ++..|+.++.+|.+..+|..+++..+...........+....
T Consensus 272 d~~tG~~~W~~~~------------~~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-- 334 (394)
T PRK11138 272 DLRSGQIVWKREY------------GS-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-- 334 (394)
T ss_pred ECCCCCEEEeecC------------CC-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--
Confidence 9999987655432 11 112222 566788888999999999999988776543222222333332
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 432 NNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 432 ~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+..|++++.||.|+++|..+++.
T Consensus 335 -~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 335 -NGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred -CCEEEEEeCCCEEEEEECCCCCE
Confidence 35788899999999999999874
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.2e-09 Score=100.34 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=165.7
Q ss_pred ecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCc
Q 007489 130 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 209 (601)
Q Consensus 130 ~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~ 209 (601)
+..+.+|+..|++++-- .+. +-+++++.|.+|++|.++....-.+..
T Consensus 728 L~nf~GH~~~iRai~Ai---------dNE------------------------NSFiSASkDKTVKLWSik~EgD~~~ts 774 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAI---------DNE------------------------NSFISASKDKTVKLWSIKPEGDEIGTS 774 (1034)
T ss_pred eecccCcHHHhHHHHhc---------ccc------------------------cceeeccCCceEEEEEeccccCccccc
Confidence 56678888888888743 222 489999999999999998744333333
Q ss_pred cCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE----EecCCCCeEEEEEcC
Q 007489 210 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV----KSKASRKIICSTISN 285 (601)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~ 285 (601)
.+......+...+.++.|-.+.+.+++.++.+.+|+--.... +.+. +.+....|.|+. +-
T Consensus 775 aCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~---------------Laq~~dapk~~a~~~ikcl~-nv 838 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRL---------------LAQMEDAPKEGAGGNIKCLE-NV 838 (1034)
T ss_pred eeeeEhhhccCcccceeeeeccceeeeccCcceeecccccch---------------hHhhhcCcccCCCceeEecc-cC
Confidence 333444445567788888889999999999999998543321 1111 111123344432 11
Q ss_pred CCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeec
Q 007489 286 SGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT 363 (601)
Q Consensus 286 ~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 363 (601)
+.. +++. +...+|+++|.+.. +-.+-|++.. .++....+++++..+.|++++++-.+|.|.+.|.++|+.+..+.
T Consensus 839 ~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcn--a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 839 DRHILIAGCSAESTVKLFDARSC-EWTCELKVCN--APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred cchheeeeccchhhheeeecccc-cceeeEEecc--CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 223 3333 47889999998861 1122233222 24445678999999999999999999999999999999988877
Q ss_pred cCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEE-EEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCC
Q 007489 364 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI-FNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
+ -.-....++ .|..+.|+....|.++.| |..-.+..+....... .+. .|-..-|..|+++...
T Consensus 916 p-----------mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp-epa---hflqsvgpSLV~a~~G 979 (1034)
T KOG4190|consen 916 P-----------MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP-EPA---HFLQSVGPSLVTAQNG 979 (1034)
T ss_pred c-----------ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC-cch---hhhhccCceeEEeccC
Confidence 6 333444444 367788888888999998 9877766554433221 111 2222135568888777
Q ss_pred CeEEEEE
Q 007489 443 NQVYVFD 449 (601)
Q Consensus 443 g~v~vwd 449 (601)
+.+.||.
T Consensus 980 n~lgVYa 986 (1034)
T KOG4190|consen 980 NILGVYA 986 (1034)
T ss_pred cEEEEEe
Confidence 7888884
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3.9e-07 Score=89.10 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=66.2
Q ss_pred EEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---------CcE
Q 007489 280 CSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---------RRI 348 (601)
Q Consensus 280 ~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---------g~i 348 (601)
...|+|||+.|+.. ..+...||.++... +.. ......+. ....|||||++|+..... ..|
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~----~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV----EQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCC-CCe----EeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 44699999988873 33444455544311 221 01111111 124899999998877654 268
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQH 412 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~ 412 (601)
.+.|+.+++. +.+.. . .......|||||++|+..+.+ ..+.+.+++.....
T Consensus 352 ~v~d~~~g~~-~~LT~-----------~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 352 YLISTNSDYI-RRLTA-----------N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred EEEECCCCCe-EECCC-----------C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 8889887764 33432 1 122358899999988766543 24777788775543
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.1e-06 Score=85.97 Aligned_cols=189 Identities=15% Similarity=0.196 Sum_probs=115.4
Q ss_pred CeEEEEEcCCCCE-EEE-Ec---CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-C--CcE
Q 007489 277 KIICSTISNSGML-FAY-SD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-D--RRI 348 (601)
Q Consensus 277 ~i~~~~~s~~g~~-l~~-~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-d--g~i 348 (601)
......|||||+. ++. +. ...|.++++.. +.. ..+....+......|+|||+.|+.... + ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---g~~------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---GKK------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---CcE------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6778999999984 554 43 23466666654 221 111112234456789999988765433 3 468
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CC--eEEEEEcCCceEEEEeeccCCCceeE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG--DVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
.++|+.+++.. .+.. +........|+|||+.|+..+. .+ .|+++|+++++...... .+.. .
T Consensus 260 y~~dl~~g~~~-~LT~-----------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~~--~ 323 (419)
T PRK04043 260 YLYDTNTKTLT-QITN-----------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGKN--N 323 (419)
T ss_pred EEEECCCCcEE-Eccc-----------CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCCc--C
Confidence 88898777643 3433 2222345689999998876653 23 68888998887643322 2222 2
Q ss_pred EEecCCCCCEEEEEeCC---------CeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--
Q 007489 426 AGFPPQNNNVLIITTSS---------NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-- 494 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~-- 494 (601)
..|+| +++.|+..... ..|++.|+++++... +... +......|+|| +..|++.
T Consensus 324 ~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~------------LT~~-~~~~~p~~SPD--G~~I~f~~~ 387 (419)
T PRK04043 324 SSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR------------LTAN-GVNQFPRFSSD--GGSIMFIKY 387 (419)
T ss_pred ceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE------------CCCC-CCcCCeEECCC--CCEEEEEEc
Confidence 48999 99988877643 378888998886432 1111 12335789998 4444433
Q ss_pred --cCceEEEEeCCC
Q 007489 495 --SARAMCVIDFGR 506 (601)
Q Consensus 495 --~~~~~~~~~~~~ 506 (601)
+...+..++++.
T Consensus 388 ~~~~~~L~~~~l~g 401 (419)
T PRK04043 388 LGNQSALGIIRLNY 401 (419)
T ss_pred cCCcEEEEEEecCC
Confidence 233466666654
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=3.9e-09 Score=98.68 Aligned_cols=281 Identities=12% Similarity=0.130 Sum_probs=169.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc-------cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~ 106 (601)
||+..|.+++-..+. .+++++.|.+|++|.++. ..+..+++.|+.+|..+.|-.+-++++++ ||.|.+||
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD 810 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD 810 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence 899999998776555 899999999999999853 23556778899999999999998888766 78999999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
.--+....+ ..| ....+....|.++.- -+. ..++
T Consensus 811 PFigr~Laq---------~~d---apk~~a~~~ikcl~n----------v~~------------------------~ili 844 (1034)
T KOG4190|consen 811 PFIGRLLAQ---------MED---APKEGAGGNIKCLEN----------VDR------------------------HILI 844 (1034)
T ss_pred ccccchhHh---------hhc---CcccCCCceeEeccc----------Ccc------------------------hhee
Confidence 876654110 000 011112233333321 011 2444
Q ss_pred Ee-cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcc
Q 007489 187 SA-GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 265 (601)
Q Consensus 187 s~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 265 (601)
.| +...+|+++|.+...- ..-|++-....
T Consensus 845 AgcsaeSTVKl~DaRsce~------------------------------------~~E~kVcna~~-------------- 874 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEW------------------------------------TCELKVCNAPG-------------- 874 (1034)
T ss_pred eeccchhhheeeecccccc------------------------------------eeeEEeccCCC--------------
Confidence 44 6677999999875321 11222211111
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcc--eEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQG--EWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
....++++++.+.|++++.+ +.|.+.+.|.++ +.. .|.... -....++ .|..+.|+..
T Consensus 875 --------Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~---G~vINswrpme-------cdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 875 --------PNALTRAIAVADKGNKLAAALSNGCIAILDARN---GKVINSWRPME-------CDLLQLA-APSDQALAQS 935 (1034)
T ss_pred --------CchheeEEEeccCcchhhHHhcCCcEEEEecCC---CceeccCCccc-------chhhhhc-CchhHHHHhh
Confidence 12557899999999999995 889999999886 332 221111 1111222 3556677777
Q ss_pred ecCCcEEE-EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce-EEEE---e--
Q 007489 343 GHDRRIYV-VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-QHWF---I-- 415 (601)
Q Consensus 343 ~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~---~-- 415 (601)
..|..+.+ |..-++....+.+++. .+..-+ -.-|.-|+++.....+.||.-.... ...+ +
T Consensus 936 aldHslaVnWhaldgimh~q~kppp-----------epahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~ 1002 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDKPPP-----------EPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP 1002 (1034)
T ss_pred cccceeEeeehhcCCeeeeccCCCC-----------cchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccc
Confidence 77888888 8876666555555422 111111 1124456666666666777421110 0001 1
Q ss_pred eccCCCceeEEEecCCCCCEEEEEeCCCeEEE
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITTSSNQVYV 447 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~v 447 (601)
..+. +..++++.-| -+.-++.|...|.|.+
T Consensus 1003 d~f~-G~lTala~LP-LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1003 DEFP-GTLTALAPLP-LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cccC-Cccceeeecc-ccchhhccCCCCceee
Confidence 1122 4678888888 6666777888887765
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=5.1e-07 Score=77.11 Aligned_cols=245 Identities=15% Similarity=0.133 Sum_probs=157.3
Q ss_pred CCeEEEEcCCCcEEEeeCCccc-hhhhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccc
Q 007489 48 CGTLVSADSTGSVQFWDSRHGT-LLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIK 125 (601)
Q Consensus 48 ~g~l~s~~~dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 125 (601)
+++|+.|+..|...+|...+.+ .++....|...|+-+.=..+ .-.+..++.|.++++.+++.+..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~------------- 150 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN------------- 150 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc-------------
Confidence 4489999999999999998554 34444455555443322222 23466788899999999887653
Q ss_pred eeEEecCccccccc--eeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC
Q 007489 126 KWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 203 (601)
Q Consensus 126 ~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~ 203 (601)
....|... +.+++++ +|++ .+++.|....|..|.+....
T Consensus 151 ------~~~~h~~~~~~ns~~~s---------nd~~------------------------~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 151 ------KFAVHNQNLTQNSLHYS---------NDPS------------------------WGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred ------cceeeccccceeeeEEc---------CCCc------------------------eEEEecCCCcceEEEeCCcc
Confidence 22334333 6777777 8877 88898988889888876511
Q ss_pred CcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 007489 204 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 283 (601)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 283 (601)
.+ .+.....+....-.+..|
T Consensus 192 ey------------------------------------------------------------~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 192 EY------------------------------------------------------------IENIYEAPTSDHGFYNSF 211 (344)
T ss_pred ce------------------------------------------------------------eeeeEecccCCCceeeee
Confidence 10 011111122344567889
Q ss_pred cCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCC--eEEEEecCCcEEEEEcCCCceee
Q 007489 284 SNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS--QLIIAGHDRRIYVVDVSSSELLH 360 (601)
Q Consensus 284 s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~--~l~~~~~dg~i~vwd~~~~~~~~ 360 (601)
+.....+|+ ..||++.|||++.. +.... .....-+.|.+.++.+.|++-|. +|+..-.-+.+.+.|+++++..+
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~--~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNM--ATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ccCcceEEEEecCCcEEEEEeccc--ccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 888888888 69999999999972 22221 12234466889999999998663 45555556789999999887555
Q ss_pred eeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE
Q 007489 361 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~ 411 (601)
.+.... +.+.......|..-.|+.++.-+.+.+.+. +.=|++.....
T Consensus 289 ~I~i~~---d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 289 VIVIPD---DVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred EEecCc---cccccccccccccccccCCCcccccccchh-hheeeccccce
Confidence 444321 111112233488888888877766665543 55566655443
No 290
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=2.5e-07 Score=80.07 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=116.1
Q ss_pred EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceee--eeccCccccc
Q 007489 293 SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH--TFTPCREEHD 370 (601)
Q Consensus 293 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~ 370 (601)
-..|.|.+|..........+-.+....+.. ....++.|++.+..++++..+|.+.+.+.....+.. ++++
T Consensus 92 ~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~--~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~------ 163 (339)
T KOG0280|consen 92 HARGQIQLYRNDEDESSVHLRGLSSKKISV--VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV------ 163 (339)
T ss_pred cccceEEEEeeccceeeeeecccchhhhhh--eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc------
Confidence 367778888776522111110011011111 134678899999999999999999976655444433 6666
Q ss_pred ccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 371 REIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
|.-++....|+.. .+++.+|+.|+.+..||+. .++..+.-...|...|.++.-+|..+.+|++|+.|-.|++|
T Consensus 164 -----He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 164 -----HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred -----cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 8888999999763 4688999999999999998 44444443345667899998888578899999999999999
Q ss_pred EcCCC-CcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 449 DVEAK-QLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 449 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
|..+- ++ +. -..-.+.|..+.++|.
T Consensus 239 DtRnm~kP----------l~--~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 239 DTRNMGKP----------LF--KAKVGGGVWRIKHHPE 264 (339)
T ss_pred ehhcccCc----------cc--cCccccceEEEEecch
Confidence 99843 21 00 0122488999999998
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.5e-07 Score=86.10 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=169.1
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
|...|+.+..+ -.+++.+++.||.++.|.-..-.- -..+..++.|-..+.+++.+ .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG--------------vEfVKhFraHL~~I~sl~~S---------~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG--------------VEFVKHFRAHLGVILSLAVS---------Y 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc--------------eeehhhhHHHHHHHHhhhcc---------c
Confidence 77777766554 568999999999999997554211 11256678888888888887 6
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecC-CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
++. .+.|.+. |..++++|+.+............|
T Consensus 64 dg~------------------------L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP--------------------- 98 (558)
T KOG0882|consen 64 DGW------------------------LFRSVEDPDHSVKVFDVENFDMINMIKLVDLP--------------------- 98 (558)
T ss_pred cce------------------------eEeeccCcccceeEEEeeccchhhhcccccCC---------------------
Confidence 664 7788777 999999998874432222111111
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEE--EcCCccEEEEeecCCCCcc
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAY--SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~--~~~~~v~l~~~~~~~~~~~ 311 (601)
. ..+...++.. ..|++ ..++.+.++|-.. +..+.
T Consensus 99 ----------------------------------------g-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~-d~~q~ 136 (558)
T KOG0882|consen 99 ----------------------------------------G-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG-DFCQD 136 (558)
T ss_pred ----------------------------------------C-ceEEecCCCCeeeeEEeecccCCCcEEECCcC-CcCcc
Confidence 0 0111111211 23444 3667788887654 11111
Q ss_pred eEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC-Cceee---eeccCcccccccCCCCCCCeeEEEEcc
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLH---TFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
. ..-.-|..+|..+.+.+-+..+++....|.|.-|.... .+... .+....+....+........+++.|+|
T Consensus 137 ~-----~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp 211 (558)
T KOG0882|consen 137 G-----YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP 211 (558)
T ss_pred c-----eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc
Confidence 1 23345678999999999999999999999999999762 11100 111111111122334667789999999
Q ss_pred CCCEEEEEecCCeEEEEEcCCceEEEEeec--------------------------------cCCCceeEEEecCCCCCE
Q 007489 388 DGQWLAAVNCFGDVYIFNLEIQRQHWFISR--------------------------------LEGASVTAAGFPPQNNNV 435 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~l~~~p~~~~~ 435 (601)
+|..+++-+.|..|+++++.+++....+.. .....-+.+.|.. .+++
T Consensus 212 ~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~f 290 (558)
T KOG0882|consen 212 DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNF 290 (558)
T ss_pred ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCE
Confidence 999999999999999999988765433211 0112334567888 8999
Q ss_pred EEEEeCCCeEEEEEcCCCCc
Q 007489 436 LIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 436 l~~~~~dg~v~vwd~~~~~~ 455 (601)
|+.++.=| |+|.++.++..
T Consensus 291 lly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 291 LLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred EEeeccee-EEEEEeecCeE
Confidence 99998777 88999887753
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=1e-06 Score=80.35 Aligned_cols=97 Identities=21% Similarity=0.335 Sum_probs=67.9
Q ss_pred cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEE
Q 007489 7 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA 86 (601)
Q Consensus 7 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~ 86 (601)
.+|+|..||..+|+.+.+..... .....+ +..+..++.+++++.++.|..||..+|+.+.++.. ...+....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-----GIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-----SCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-
T ss_pred CCCEEEEEECCCCCEEEEEECCC-----CCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-
Confidence 47899999999999999997421 122222 22333566888889999999999999998876664 22211111
Q ss_pred eCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 87 APSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 87 s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
..++..++.++.++.+..+|..+++
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGK 97 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSC
T ss_pred eecccccccccceeeeEecccCCcc
Confidence 2246667777788899999988887
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=5.7e-06 Score=72.10 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=50.1
Q ss_pred EEEEEeeCCeEEEEcCCCcEEEeeCCcc--chhhhc---cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 41 WSLLSLRCGTLVSADSTGSVQFWDSRHG--TLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 41 ~~v~~s~~g~l~s~~~dg~i~vwd~~~~--~~~~~~---~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
|.++.+++|.+++.-.|..|.|=..++. ..+... +...-.=..++||||+..|+.+...|+|++||+.+..
T Consensus 1 W~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 1 WHLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred CceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 3466778887777777777777665432 111111 2222344679999999999999999999999998755
No 294
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.82 E-value=2e-08 Score=106.75 Aligned_cols=172 Identities=16% Similarity=0.240 Sum_probs=133.9
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
-+||+.||.|++|....++.+..+... |. ..|+.+.|+.+| .+..+..||.+.+|.+. .++....+.|...
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~~~rt~------g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFRTA------GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKA 2294 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEEEeecc------Cc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcc
Confidence 479999999999999999999988853 44 899999999999 99999999999999988 6677778889999
Q ss_pred eEEEEEeCCCCEEEEEe---eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 81 VNALAAAPSHNRVFSTG---SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
....+|-. ..+++++ .++.+.+||..-... .|. +. ..|.+.++++++. |.
T Consensus 2295 ~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-------------~s~-v~--~~H~~gaT~l~~~---------P~ 2347 (2439)
T KOG1064|consen 2295 LSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-------------NSL-VH--TCHDGGATVLAYA---------PK 2347 (2439)
T ss_pred ccceeeee--hhhhccccCCCCCcccchhcccCcc-------------cce-ee--eecCCCceEEEEc---------Cc
Confidence 99999974 6677765 468899999654331 121 22 7899999999998 77
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE-
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ- 236 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 236 (601)
-+ .|++||.+|.|++||++..+....... +. ...++++
T Consensus 2348 ~q------------------------llisggr~G~v~l~D~rqrql~h~~~~----------------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2348 HQ------------------------LLISGGRKGEVCLFDIRQRQLRHTFQA----------------LD-TREYFVTG 2386 (2439)
T ss_pred ce------------------------EEEecCCcCcEEEeehHHHHHHHHhhh----------------hh-hhheeecc
Confidence 65 999999999999999987544333221 11 2233333
Q ss_pred -eCCeeEEeecccc
Q 007489 237 -YSCRLDILSVRLE 249 (601)
Q Consensus 237 -~~~~i~i~~~~~~ 249 (601)
..|.++||++...
T Consensus 2387 ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcccceEEEEcccc
Confidence 3389999999855
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.81 E-value=2.4e-06 Score=93.24 Aligned_cols=271 Identities=13% Similarity=0.066 Sum_probs=145.7
Q ss_pred EeeecCCcEEEEECCCCceEEEEEe-ccCC-----CCCCCceEEEEEEEeeCC-eEEEE-cCCCcEEEeeCCccchhhhc
Q 007489 3 YSGSSDGYIRSWDAKLGYEIYRITV-GLGG-----LGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAH 74 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~-----~~~~h~~~V~~v~~s~~g-~l~s~-~~dg~i~vwd~~~~~~~~~~ 74 (601)
++-+.++.|++||.. |..+..+.. +..+ ....+-..-..|++.+++ .|+.+ ...+.|+++|..++. +.++
T Consensus 584 VaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tl 661 (1057)
T PLN02919 584 ISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTL 661 (1057)
T ss_pred EEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEE
Confidence 445566788899864 665554432 1100 011122345788999887 55554 456789999987654 2222
Q ss_pred cc----------c-------ccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc
Q 007489 75 SF----------H-------KGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 136 (601)
Q Consensus 75 ~~----------h-------~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 136 (601)
.+ . -.....++|+| ++..+++.+.++.|++|+..++...... .........-.......
T Consensus 662 ag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~---G~G~~~~~~g~~~~~~~ 738 (1057)
T PLN02919 662 AGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS---GDGYERNLNGSSGTSTS 738 (1057)
T ss_pred eccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe---cCCccccCCCCcccccc
Confidence 11 0 12346899999 5556667777899999998775420000 00000000000000001
Q ss_pred ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCc
Q 007489 137 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 216 (601)
Q Consensus 137 ~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 216 (601)
-.....++++ |+++ .++++-+.++.|++||+.+...
T Consensus 739 ~~~P~GIavs---------pdG~-----------------------~LYVADs~n~~Irv~D~~tg~~------------ 774 (1057)
T PLN02919 739 FAQPSGISLS---------PDLK-----------------------ELYIADSESSSIRALDLKTGGS------------ 774 (1057)
T ss_pred ccCccEEEEe---------CCCC-----------------------EEEEEECCCCeEEEEECCCCcE------------
Confidence 1234456666 6654 2556666778999999875221
Q ss_pred cceeeeeccccCCCeEEEEEeCCe--eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E
Q 007489 217 VPIHLVHNTIFSHTSLLLVQYSCR--LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S 293 (601)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~ 293 (601)
..++.++.. ..+..+....+. + . . ..-.....++++++|+++++ .
T Consensus 775 ---------------~~~~gg~~~~~~~l~~fG~~dG~-------g-----~--~---~~l~~P~Gvavd~dG~LYVADs 822 (1057)
T PLN02919 775 ---------------RLLAGGDPTFSDNLFKFGDHDGV-------G-----S--E---VLLQHPLGVLCAKDGQIYVADS 822 (1057)
T ss_pred ---------------EEEEecccccCcccccccCCCCc-------h-----h--h---hhccCCceeeEeCCCcEEEEEC
Confidence 000000000 000000000000 0 0 0 00123468889999987777 6
Q ss_pred cCCccEEEEeecCCCCcceEEEeee---------cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce
Q 007489 294 DHVKPSLFELKKGKVGQGEWIINKR---------QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL 358 (601)
Q Consensus 294 ~~~~v~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~ 358 (601)
.++.|++|+... +... .+... ...........++++++|+.+++-+.++.|++||+.+++.
T Consensus 823 ~N~rIrviD~~t---g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 823 YNHKIKKLDPAT---KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCC---CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999864 2111 11110 0122233567899999999888888899999999988765
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=2.5e-05 Score=71.43 Aligned_cols=186 Identities=12% Similarity=0.144 Sum_probs=113.6
Q ss_pred eEEEEEc-CCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCc-CccceeEEEEccCCCeEEEEecC--------Cc
Q 007489 278 IICSTIS-NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHD--------RR 347 (601)
Q Consensus 278 i~~~~~s-~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~s~d~~~l~~~~~d--------g~ 347 (601)
...+++. +++.++++. .+.+.++|+.. +... .+....... .....+.+++.|+|++.++.... |.
T Consensus 42 ~~G~~~~~~~g~l~v~~-~~~~~~~d~~~---g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVAD-SGGIAVVDPDT---GKVT-VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTTSEEEEEE-TTCEEEEETTT---TEEE-EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccCCEEEEEE-cCceEEEecCC---CcEE-EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 6667777 665555554 45566666654 2111 111121122 35577899999999977765543 55
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE-EEecCCeEEEEEcCCceE----EEEeeccCC--
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCFGDVYIFNLEIQRQ----HWFISRLEG-- 420 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la-s~~~dg~i~iwd~~~~~~----~~~~~~~~~-- 420 (601)
|..++.. ++...... .-...+.|+|+||++.|+ +-+..+.|..|+++.... ...+.....
T Consensus 117 v~~~~~~-~~~~~~~~------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVAD------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP 183 (246)
T ss_dssp EEEEETT-SEEEEEEE------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS
T ss_pred eEEECCC-CeEEEEec------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC
Confidence 7777766 55433333 234578999999999776 556788899999863221 122222222
Q ss_pred CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
..+-.+++.. ++++.++....+.|.+++.+ +++. ..+.-....+++++|.-. ..+.|++-+
T Consensus 184 g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~-----------~~i~~p~~~~t~~~fgg~-~~~~L~vTt 244 (246)
T PF08450_consen 184 GYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLL-----------REIELPVPRPTNCAFGGP-DGKTLYVTT 244 (246)
T ss_dssp CEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEE-----------EEEE-SSSSEEEEEEEST-TSSEEEEEE
T ss_pred cCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEE-----------EEEcCCCCCEEEEEEECC-CCCEEEEEe
Confidence 2478899999 99888887889999999998 5531 122222347999999432 256676654
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=3.7e-05 Score=70.27 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEee-ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 276 RKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
...+.++|+|+++.|.++ ..+.|..|++.. .+..+-.... ..+.......-.+++..+|++.++....+.|.+++
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA--DGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEET--TTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccc--cccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 557899999999987764 556666666654 2221211111 12233223467899999999888877889999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEc-cCCCEEEEEe
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTS-SDGQWLAAVN 396 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd~~~las~~ 396 (601)
.. |+.+..+.. ....+++++|. ++.+.|+..+
T Consensus 212 p~-G~~~~~i~~-----------p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIEL-----------PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE------------SSSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcC-----------CCCCEEEEEEECCCCCEEEEEe
Confidence 77 998888876 33579999994 6766665443
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=3e-07 Score=83.23 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=103.4
Q ss_pred eccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEEcCCccE
Q 007489 223 HNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYSDHVKPS 299 (601)
Q Consensus 223 ~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~~~v~ 299 (601)
..+..++.+++++.+. ....++++...... .+++.....+ ..-+++.+-.+. ..+++-..|.++
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~ 132 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------AKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVY 132 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc-----------ceeeeEeecc--cCcceeeeeeccceEEEEeecCCce
Confidence 3445667788887765 34445555543321 1122222222 223333333333 333333344444
Q ss_pred EEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCC
Q 007489 300 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 379 (601)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (601)
.++.-..+.+.. ..+.+|...++.++++||+++|+++..|..|+|-.....-.+..|.-. |..-
T Consensus 133 ~~di~s~~~~~~------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG----------H~eF 196 (390)
T KOG3914|consen 133 SFDILSADSGRC------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG----------HKEF 196 (390)
T ss_pred eeeeecccccCc------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc----------cHhh
Confidence 444433111211 456788999999999999999999999999999887655555555432 8899
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~ 414 (601)
|..++.-++ +.|++++.|++|++||+.+++...+
T Consensus 197 VS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 197 VSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred eeeeeeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence 999998655 5589999999999999999987544
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=8.2e-06 Score=71.13 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=126.9
Q ss_pred cccCCCeEEEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe--cCCCCeEEEEEcCCCCEEEE-EcCCccEE
Q 007489 225 TIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS--KASRKIICSTISNSGMLFAY-SDHVKPSL 300 (601)
Q Consensus 225 ~~~~~~~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~-~~~~~v~l 300 (601)
++.+.+|++||.. +..++|-.....-.. .+.+... .....-+.++||||+.+||. .+.|+|++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-------------i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSS-------------IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchh-------------eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence 3456778777654 466666654432211 1222222 22345678999999999999 58899999
Q ss_pred EEeecCCCCcceEEEeeec-CCc-CccceeEEEEccCC------CeEEEEecCCcEEEEEcCC-----CceeeeeccCcc
Q 007489 301 FELKKGKVGQGEWIINKRQ-LPR-KLQFAHSMIFSYDS------SQLIIAGHDRRIYVVDVSS-----SELLHTFTPCRE 367 (601)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~i~~s~d~------~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~ 367 (601)
||+. +..++.+.... ..+ ....|..+.|-+-. ..|++-..+|.++-|-+.. .+..++|.-...
T Consensus 70 fdl~----g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~ 145 (282)
T PF15492_consen 70 FDLM----GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH 145 (282)
T ss_pred Eecc----cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc
Confidence 9997 44454443321 122 12356666665421 2466677788887776532 234444443211
Q ss_pred cccccCCCCCCCeeEEEEccCCCEEEEEec----CC-------eEEEEEcCCceEEEE--------------------ee
Q 007489 368 EHDREIQPSEPPITKMFTSSDGQWLAAVNC----FG-------DVYIFNLEIQRQHWF--------------------IS 416 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l~~spd~~~las~~~----dg-------~i~iwd~~~~~~~~~--------------------~~ 416 (601)
+...|+++.++|..++|+.|+. ++ -+..|.+-.+.+... +.
T Consensus 146 --------yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~ 217 (282)
T PF15492_consen 146 --------YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP 217 (282)
T ss_pred --------CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeecc
Confidence 5778999999999998887653 11 266776632211100 00
Q ss_pred --------ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 417 --------RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 417 --------~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
......|..|..|| |+..||+...+|.|.+|++.+-.
T Consensus 218 ~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcch
Confidence 11235788999999 99999999999999999998754
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=4e-05 Score=65.67 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=77.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+++.||..+.+.--|..+|..+.+-. -...|-+-+.--.+.++.|+..|.+.+.+.++|.+...+..-..-
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 36778888889999999998877664 234454444443448999999999999999999888777643322
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
=......+++..++.|+.|++....|..+..+
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 22334567899999999999999999887653
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=1.5e-08 Score=61.99 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=36.6
Q ss_pred cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEE
Q 007489 68 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 68 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~ 106 (601)
|+++.++.+|.+.|.+|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457788999999999999999999999999999999997
No 302
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.74 E-value=7.6e-06 Score=74.59 Aligned_cols=242 Identities=11% Similarity=0.113 Sum_probs=133.0
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC----CeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS----CRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
...|.+||..+........+...+...........+++.+++++.... ..+.|.++.... .
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k---------------v 130 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK---------------V 130 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE---------------E
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc---------------e
Confidence 348999999986544333333222222223444556777777655432 577777776433 4
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
+.++..++-..|. -+++..+.+.|.||++.-..+.. .++..-.............+..-+++..+..++--+.+|
T Consensus 131 v~ei~~PGC~~iy---P~~~~~F~~lC~DGsl~~v~Ld~--~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G 205 (342)
T PF06433_consen 131 VGEIDTPGCWLIY---PSGNRGFSMLCGDGSLLTVTLDA--DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG 205 (342)
T ss_dssp EEEEEGTSEEEEE---EEETTEEEEEETTSCEEEEEETS--TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS
T ss_pred eeeecCCCEEEEE---ecCCCceEEEecCCceEEEEECC--CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC
Confidence 5555544311111 12233455559999999999985 344332222222223233334445666666666688999
Q ss_pred cEEEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC----------CeEEEEEcCCceEEEE
Q 007489 347 RIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF----------GDVYIFNLEIQRQHWF 414 (601)
Q Consensus 347 ~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d----------g~i~iwd~~~~~~~~~ 414 (601)
.|+-.|+..... ...+...... +.....-.+.-.-+++++..+.|++.-.. ..|.+||+.+++.+..
T Consensus 206 ~v~~~dlsg~~~~~~~~~~~~t~~-e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 206 NVYSADLSGDSAKFGKPWSLLTDA-EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp EEEEEEETTSSEEEEEEEESS-HH-HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCcccccCcccccCcc-ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence 999999865432 2222211000 00001112334557888776666553322 1588999999999888
Q ss_pred eeccCCCceeEEEecCCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 007489 415 ISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 415 ~~~~~~~~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~ 455 (601)
++.. .++.+|..+.++..+|++.+ .++.|.+||..++++
T Consensus 285 i~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 285 IPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 7753 36889999994445665554 579999999999985
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.74 E-value=9.4e-06 Score=84.19 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=94.3
Q ss_pred eeEEEEccCCCeEEEEe-----cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe---cC
Q 007489 327 AHSMIFSYDSSQLIIAG-----HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---CF 398 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~---~d 398 (601)
-++|.|--||+++|+.. ....|+|||.+ |.+-.+-.+ ..+.-.+++|-|.|.++|+-- .|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~-----------~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP-----------VEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc-----------ccccccceeecCCCCeEeeeeecCCC
Confidence 36789999999998833 23689999976 544322222 334456899999999998753 46
Q ss_pred CeEEEEEcCCceEEE-EeeccCC-CceeEEEecCCCCCEEEE---EeCCCeEEEEEcCCCCcccchhcccCCcCcccccC
Q 007489 399 GDVYIFNLEIQRQHW-FISRLEG-ASVTAAGFPPQNNNVLII---TTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF 473 (601)
Q Consensus 399 g~i~iwd~~~~~~~~-~~~~~~~-~~v~~l~~~p~~~~~l~~---~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 473 (601)
+.|.+|.-.+.+.-. .++-... ..+..++|+. ++..|++ ......|++|-+.+-. |.... .+. .
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh---WYLKq------~l~-~ 334 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH---WYLKQ------ELQ-F 334 (1265)
T ss_pred CcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE---EEEEE------EEe-c
Confidence 679999876544321 1222112 3489999999 9999988 4445569999988754 32111 111 1
Q ss_pred CCcEEEEEeCCCCCCCEEEEEcC
Q 007489 474 PGEVIGLSFSPSPSSSSVIIYSA 496 (601)
Q Consensus 474 ~~~v~~i~~~p~~~~~~~~~~~~ 496 (601)
+.. .-+.|+|. ....+.++..
T Consensus 335 ~~~-~~~~W~p~-~~~~L~v~~~ 355 (1265)
T KOG1920|consen 335 SQK-ALLMWDPV-TEKTLHVLRE 355 (1265)
T ss_pred ccc-ccccccCC-CceeEEEEec
Confidence 111 11889987 7888888853
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.6e-06 Score=77.28 Aligned_cols=271 Identities=12% Similarity=0.083 Sum_probs=154.0
Q ss_pred EEEeeCCccchhhhccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc
Q 007489 60 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 138 (601)
Q Consensus 60 i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 138 (601)
+++.+..+.+..+-+.+|...|..++|||..+ .+..++.+..|+|.|+++... ...+..| .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------vssy~a~-~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------VSSYIAY-N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------eeheecc-C
Confidence 66666666666677778999999999999776 788999999999999999774 5555555 7
Q ss_pred ceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcc-
Q 007489 139 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV- 217 (601)
Q Consensus 139 ~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~- 217 (601)
.+++++|. -|.. ++++.|-..|.|.+||++................+
T Consensus 237 ~~wSC~wD---------lde~-----------------------h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv 284 (463)
T KOG1645|consen 237 QIWSCCWD---------LDER-----------------------HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPV 284 (463)
T ss_pred Cceeeeec---------cCCc-----------------------ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcc
Confidence 88999987 4443 59999999999999999874432111111000000
Q ss_pred -ceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cC
Q 007489 218 -PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DH 295 (601)
Q Consensus 218 -~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~ 295 (601)
....+..-...+-+-+++...-....|.+....... ..+ +.....+...+++..+-.+.++.+ ..
T Consensus 285 ~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~-----------p~v--lele~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 285 HKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECL-----------PCV--LELEPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred eeecccCccccccccceEEeeehhhhhhhhhccccCC-----------Ccc--cccCCCcceeeeeecCccceEEEEecC
Confidence 001111112334455666666677778776554332 111 122222344444554433333331 11
Q ss_pred ----CccE--EEEeecCCCCcceEEEeeecCCcCc---cceeEEEEccCCCeEE-EEecCCcEEEEEcCCCceeeeeccC
Q 007489 296 ----VKPS--LFELKKGKVGQGEWIINKRQLPRKL---QFAHSMIFSYDSSQLI-IAGHDRRIYVVDVSSSELLHTFTPC 365 (601)
Q Consensus 296 ----~~v~--l~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~s~d~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~ 365 (601)
-.++ +-+.+. ..+..+|........... ..-..+.-.++.++++ ++...+.+.+||..+++.++++.-
T Consensus 352 ~pn~p~~r~il~~~d~-~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~- 429 (463)
T KOG1645|consen 352 NPNFPQSRFILGRIDF-RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL- 429 (463)
T ss_pred CCCCccceeeeeeecc-ccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeeccc-
Confidence 0111 011111 123333322211111100 0112222234555544 444567899999999999999884
Q ss_pred cccccccCCCCCCCeeEEEEcc-C-CCEEEEEecCCeEEEEEcC
Q 007489 366 REEHDREIQPSEPPITKMFTSS-D-GQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~sp-d-~~~las~~~dg~i~iwd~~ 407 (601)
..+|..++... + +.||++-. |..++||..+
T Consensus 430 -----------~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 430 -----------SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred -----------CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 56777776544 2 34666665 4468888654
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=1.2e-07 Score=83.93 Aligned_cols=169 Identities=12% Similarity=0.202 Sum_probs=117.2
Q ss_pred CCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-----ceeee
Q 007489 287 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-----ELLHT 361 (601)
Q Consensus 287 g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~-----~~~~~ 361 (601)
|-.+++|.+..+-+-++.+ +.. ..+. ..+.|.++.|...+.++..|+.+|.|..+|++.+ .+.+.
T Consensus 225 gyhfs~G~sqqv~L~nvet---g~~------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVET---GHQ------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred eeeecccccceeEEEEeec---ccc------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3344557777777877776 211 1222 3557888889888899999999999999999654 34555
Q ss_pred eccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCceEEEEeeccCC----CceeEEEecCCCCCEE
Q 007489 362 FTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG----ASVTAAGFPPQNNNVL 436 (601)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~~~p~~~~~l 436 (601)
+. |...|+++..-. ++++|.+.+.+|.|.+||+..-++...+..+.+ ....-+...+ ....+
T Consensus 295 ly------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I 361 (425)
T KOG2695|consen 295 LY------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSI 361 (425)
T ss_pred EE------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceE
Confidence 55 888899987766 889999999999999999987776333333332 1222334556 67789
Q ss_pred EEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 437 IITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 437 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
++++.|...+||.++.+.+..- +|........-+.+++|+..
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~t-------ipf~~s~~e~d~~sv~~~sr 403 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCT-------IPFPYSASEVDIPSVAFDSR 403 (425)
T ss_pred EEccCeeEEEEEecccCceeec-------cCCCCccccccccceehhcc
Confidence 9999999999999999986321 12222222335667777654
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=1.1e-05 Score=73.61 Aligned_cols=159 Identities=17% Similarity=0.244 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccC
Q 007489 286 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC 365 (601)
Q Consensus 286 ~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 365 (601)
++..++...++.++.+|..+ +..+|.......+... .........++..++++..++.|..+|..+|+.+......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~t---G~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKT---GKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TTEEEEEETTSEEEEEETTT---SCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred ccccccccceeeeEecccCC---cceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 34444446677777777655 7888874332211111 1122223334778888888999999999999998777652
Q ss_pred cccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeE
Q 007489 366 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV 445 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v 445 (601)
......... ....+..-....++ .+..++.++.+.-+|+.+++..+..+ .+ .+..+ ... ++..|++++.++.|
T Consensus 152 ~~~~~~~~~-~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~--~~~~~-~~~-~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 152 EPRGSSPIS-SFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS--GIYSL-PSV-DGGTLYVTSSDGRL 224 (238)
T ss_dssp TT-SS--EE-EETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS---ECEC-EEC-CCTEEEEEETTTEE
T ss_pred CCCCCccee-eecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC--CccCC-cee-eCCEEEEEeCCCEE
Confidence 110000000 00111222222344 77777777764444999999776444 33 23331 344 67788888899999
Q ss_pred EEEEcCCCCc
Q 007489 446 YVFDVEAKQL 455 (601)
Q Consensus 446 ~vwd~~~~~~ 455 (601)
..||+++++.
T Consensus 225 ~~~d~~tG~~ 234 (238)
T PF13360_consen 225 YALDLKTGKV 234 (238)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCCE
Confidence 9999999873
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.69 E-value=2.6e-06 Score=76.65 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=132.8
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEE-----cCCCcEEEeeCC-ccchhhhccccccceE
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-----DSTGSVQFWDSR-HGTLLQAHSFHKGDVN 82 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~-----~~dg~i~vwd~~-~~~~~~~~~~h~~~V~ 82 (601)
...+||..+|+.++.+..+.+....||. +||+|| +|++. ...|.|-|||.. +.+.+..+..|.-...
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH 102 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH 102 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh
Confidence 3678999999999999876665555664 799999 66654 346899999998 5677788888887788
Q ss_pred EEEEeCCCCEEEEEe------------------eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc--cccccceeE
Q 007489 83 ALAAAPSHNRVFSTG------------------SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV--RAHTHDVRA 142 (601)
Q Consensus 83 ~l~~s~~~~~l~s~~------------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~ 142 (601)
.+.+.|||+.|+.+- .+..+...|..++++ .....+ ..|...++.
T Consensus 103 el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l---------------l~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 103 ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL---------------LEQVELPPDLHQLSIRH 167 (305)
T ss_pred hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce---------------eeeeecCccccccceee
Confidence 899999998887662 233344444444442 011123 347778999
Q ss_pred EEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeee
Q 007489 143 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 222 (601)
Q Consensus 143 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (601)
|++. ++|.+..-. .++.-.....++++.-..++.+...+... .........+
T Consensus 168 La~~---------~~G~V~~a~--------Q~qg~~~~~~PLva~~~~g~~~~~~~~p~-----------~~~~~l~~Y~ 219 (305)
T PF07433_consen 168 LAVD---------GDGTVAFAM--------QYQGDPGDAPPLVALHRRGGALRLLPAPE-----------EQWRRLNGYI 219 (305)
T ss_pred EEec---------CCCcEEEEE--------ecCCCCCccCCeEEEEcCCCcceeccCCh-----------HHHHhhCCce
Confidence 9987 776511100 00000000112333333333333333221 1112233577
Q ss_pred eccccCCCeEEEEEeC---CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCc
Q 007489 223 HNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVK 297 (601)
Q Consensus 223 ~~~~~~~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 297 (601)
-++++++++..++.++ +.+.+|+..+.. .+.... -..+..++..+++ +++++..|.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~---------------~~~~~~---l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGR---------------LLGSVP---LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCC---------------Eeeccc---cCceeeeeecCCc-eEEeCCCcc
Confidence 7899999987666554 789999877554 222222 2446666666666 666655544
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=5.4e-05 Score=78.83 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=110.8
Q ss_pred CCeEEEEEcCCCCEEEEE-----cC-CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec---CC
Q 007489 276 RKIICSTISNSGMLFAYS-----DH-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DR 346 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~-----~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---dg 346 (601)
..=+.+.|--||+++|++ .+ ..+++|+-.. .+ + ..-......-.+++|-|.|..+++-.. |+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-----~L---n-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-----AL---N-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-----hh---h-cccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 334578899999999882 44 7899998762 10 0 001111223368899999999887643 56
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE---EecCCeEEEEEcCCceEEEEeec---cCC
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA---VNCFGDVYIFNLEIQRQHWFISR---LEG 420 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las---~~~dg~i~iwd~~~~~~~~~~~~---~~~ 420 (601)
.|.+|.-+ |-.-..|.-..+. ....+..++|+.++..||. ......|++|-+.+.. |.++. +..
T Consensus 267 ~IvffErN-GL~hg~f~l~~p~-------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--WYLKq~l~~~~ 336 (1265)
T KOG1920|consen 267 DIVFFERN-GLRHGEFVLPFPL-------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--WYLKQELQFSQ 336 (1265)
T ss_pred cEEEEecC-CccccccccCCcc-------cccchheeeecCCCCceeeeecccccceEEEEEecCeE--EEEEEEEeccc
Confidence 79999843 4433333321110 3344899999999999997 4445559999876643 23322 222
Q ss_pred CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEE
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMC 500 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~ 500 (601)
... +.|+|.....|.+-..+|...++|+.-. .+++|+ ....+.+.+.+.+.
T Consensus 337 ~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~--------------------------t~~s~~-d~S~~~VIDgs~ll 387 (1265)
T KOG1920|consen 337 KAL--LMWDPVTEKTLHVLRESGQRLVRDFAWT--------------------------TDRSPN-DGSTVYVIDGSRLL 387 (1265)
T ss_pred ccc--ccccCCCceeEEEEecCCcEEEEEEEEe--------------------------eeccCC-CCceEEEEeCCEEE
Confidence 122 7898844555555556777777665321 233344 34556666666676
Q ss_pred EEeCCC
Q 007489 501 VIDFGR 506 (601)
Q Consensus 501 ~~~~~~ 506 (601)
+-+++.
T Consensus 388 vT~ls~ 393 (1265)
T KOG1920|consen 388 VTPLSL 393 (1265)
T ss_pred Eecchh
Confidence 667765
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=1e-07 Score=58.19 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=35.8
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
++++.++.+ |...|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~-----------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-----------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-----------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-----------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356778887 999999999999999999999999999997
No 310
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.65 E-value=8.2e-05 Score=75.09 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=66.9
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceE-E-EEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC-I-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-V-~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
|+.++.++.|.-.|..+|+.+.+........ ..... + ..+++..+++++.++.+|.|.-+|.++|+.+-.+.....
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 5677888999999999999998886421100 00001 1 112222226888888999999999999998866653221
Q ss_pred c-----eE-EEEEeCCCCEEEEEe---------eCCeEEEEEeccCcC
Q 007489 80 D-----VN-ALAAAPSHNRVFSTG---------SDGQVILYKASCESI 112 (601)
Q Consensus 80 ~-----V~-~l~~s~~~~~l~s~~---------~dg~i~vw~~~~~~~ 112 (601)
. +. +..+. +..++.++ .++.+..+|..+++.
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 1 11 11222 34455543 367889999988873
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=1.3e-06 Score=74.43 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=92.0
Q ss_pred EEeeecCCcEEEEECCCCc-eEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcC------CCcEEEeeCCccc-hhhh
Q 007489 2 LYSGSSDGYIRSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGT-LLQA 73 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~------dg~i~vwd~~~~~-~~~~ 73 (601)
+++|..||.+.+.+.+.-. ..+++.. .|.+ -.+.+....+.++.+.. -+..+.|+++--+ ++..
T Consensus 104 V~~~~~dg~~~v~s~~~~~~~~~~i~~-------~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDKDLALMSRIPS-------IHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred eEecCCCceEEEEechHHHhhhhhccc-------cccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence 6889999999999976411 1111110 1211 12223333443333322 3455666665322 2222
Q ss_pred ccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 74 HSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
.+. ...|.+++-+|.. +.+++|+.||.+.+||.+.... +...+..|...+..+-|+
T Consensus 176 ~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----------------p~S~l~ahk~~i~eV~FH------ 232 (319)
T KOG4714|consen 176 KKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----------------PVSLLKAHKAEIWEVHFH------ 232 (319)
T ss_pred ccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccc----------------hHHHHHHhhhhhhheecc------
Confidence 222 2349999999954 5666888999999999998653 255778999999999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 201 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~ 201 (601)
|... ..|++++.||.++.||..+
T Consensus 233 ---pk~p-----------------------~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 233 ---PKNP-----------------------EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---CCCc-----------------------hheeEecCCCcEEEEcCCC
Confidence 4432 4899999999999999874
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=5e-05 Score=68.54 Aligned_cols=247 Identities=16% Similarity=0.176 Sum_probs=135.0
Q ss_pred EEEEEeeCC--eEEEEcCCC-cEEEeeCCccchhhhccccccce--EEEEEeCCCCEEEEEe-----eCCeEEEEEeccC
Q 007489 41 WSLLSLRCG--TLVSADSTG-SVQFWDSRHGTLLQAHSFHKGDV--NALAAAPSHNRVFSTG-----SDGQVILYKASCE 110 (601)
Q Consensus 41 ~~v~~s~~g--~l~s~~~dg-~i~vwd~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~~-----~dg~i~vw~~~~~ 110 (601)
..++.+|+. .++.+-.-| ...+||..+++..+.+....+.- =.-+||+||++|++.- ..|.|-|||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 456778855 455555555 47789999998877665322221 1358999999999863 3588999999833
Q ss_pred cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec-
Q 007489 111 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG- 189 (601)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~- 189 (601)
- ..+..+..|.-.--.+.+. |||+ .|+.+.
T Consensus 88 ~----------------~ri~E~~s~GIGPHel~l~---------pDG~------------------------tLvVANG 118 (305)
T PF07433_consen 88 Y----------------RRIGEFPSHGIGPHELLLM---------PDGE------------------------TLVVANG 118 (305)
T ss_pred c----------------EEEeEecCCCcChhhEEEc---------CCCC------------------------EEEEEcC
Confidence 2 1255566665555556666 8885 444432
Q ss_pred -CC-----CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC-eeEEeeccccCCcccCCCCCCCC
Q 007489 190 -DD-----TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC-RLDILSVRLENNVESRSSSGGHA 262 (601)
Q Consensus 190 -~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~i~i~~~~~~~~~~~~~~~~~~~ 262 (601)
.. |..++ ++.+ ..|+-.+|=..+| -+.-|.+..
T Consensus 119 GI~Thpd~GR~kL-Nl~t-------------------------M~psL~~ld~~sG~ll~q~~Lp~-------------- 158 (305)
T PF07433_consen 119 GIETHPDSGRAKL-NLDT-------------------------MQPSLVYLDARSGALLEQVELPP-------------- 158 (305)
T ss_pred CCccCcccCceec-Chhh-------------------------cCCceEEEecCCCceeeeeecCc--------------
Confidence 11 00000 1110 0011111101111 122222210
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCc-----cEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC
Q 007489 263 STSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVK-----PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 336 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~-----v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~ 336 (601)
..++..|..+++.++|..++.. ..+. --+.-.+. +....+.............-+-+|++++++
T Consensus 159 ---------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 159 ---------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred ---------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCC
Confidence 1134568888888888766653 1111 11222221 111121111111122334578899999999
Q ss_pred CeEEEEe-cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 337 SQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 337 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
.++++.+ ..+.+.+||..+++.+....- ..+..++..+++ ++++.+ .|.+
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-------------~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGRLLGSVPL-------------PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCCEeecccc-------------CceeeeeecCCc-eEEeCC-CccE
Confidence 8876555 467899999999998766543 346777777776 555544 4443
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=3.7e-06 Score=83.47 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=63.7
Q ss_pred eEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc
Q 007489 38 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~ 109 (601)
-.+.+++|+|.. .|++|-.-|.+.+|...+.+.......|..+|..+.||++|..++|+..-|.|.+|....
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 346779999999 888999999999999987766666667999999999999999999999999999998773
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=4.8e-07 Score=76.92 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=63.5
Q ss_pred eEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchh-hhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccC
Q 007489 38 LCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL-QAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 38 ~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~-~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
..|.+++-+|.. .+++|+.||.+-+||.+..... ..++.|+++|+.+-|+| ++..|++++.||.+..||..+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 349999999876 7889999999999999887544 56778999999999999 6789999999999999998863
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=0.00046 Score=59.43 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=70.6
Q ss_pred EeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCcc
Q 007489 45 SLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 122 (601)
Q Consensus 45 ~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 122 (601)
..+|. +++.|+..+.+.--|.++|.++..-. -...|.+-+.- -|++++.|...|.+.+.+..++..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~---------- 85 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ---------- 85 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh----------
Confidence 34555 67888999999999999998764322 12233322222 478899999999999999999863
Q ss_pred ccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecccc
Q 007489 123 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 202 (601)
Q Consensus 123 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~ 202 (601)
-|.... ...|.+-+.. .+++. .++.|+.|++++..|.++.
T Consensus 86 ---~w~f~~-----~~~vk~~a~~--------d~~~g------------------------lIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 86 ---IWNFVI-----LETVKVRAQC--------DFDGG------------------------LIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred ---eeeeee-----hhhhccceEE--------cCCCc------------------------eEEEecCCCcEEEeccccc
Confidence 232211 1122211111 04554 9999999999999999875
Q ss_pred CC
Q 007489 203 TK 204 (601)
Q Consensus 203 ~~ 204 (601)
..
T Consensus 126 ~c 127 (354)
T KOG4649|consen 126 GC 127 (354)
T ss_pred ce
Confidence 43
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=6.3e-05 Score=68.74 Aligned_cols=275 Identities=13% Similarity=0.117 Sum_probs=151.3
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe----------eCCeEEEEEeccCcCCCCCCCCCcccccee
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPNDGLSSSEVIKKW 127 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 127 (601)
+++.|.|..+++.+-.+.. +-.-.+..+||++.+++++ +.-.|.+||..+-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~--------------- 79 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP--------------- 79 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE---------------
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc---------------
Confidence 4799999999988776663 2333467899999998764 344689999888642
Q ss_pred EEecCc--cc-----cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec--CCCeEEEEe
Q 007489 128 IYVGSV--RA-----HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--DDTKLFAYC 198 (601)
Q Consensus 128 ~~~~~~--~~-----h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~v~~~~ 198 (601)
...+ .. .......++++ .|++ +++... -...|.+.|
T Consensus 80 --~~EI~iP~k~R~~~~~~~~~~~ls---------~dgk------------------------~~~V~N~TPa~SVtVVD 124 (342)
T PF06433_consen 80 --TGEIEIPPKPRAQVVPYKNMFALS---------ADGK------------------------FLYVQNFTPATSVTVVD 124 (342)
T ss_dssp --EEEEEETTS-B--BS--GGGEEE----------TTSS------------------------EEEEEEESSSEEEEEEE
T ss_pred --cceEecCCcchheecccccceEEc---------cCCc------------------------EEEEEccCCCCeEEEEE
Confidence 1100 00 01111222333 4554 333332 233667777
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
+...+......... +..-.-..+++...++++|.+....++..... . .....+.......+
T Consensus 125 l~~~kvv~ei~~PG--------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~----------~-~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 125 LAAKKVVGEIDTPG--------CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE----------A-QKSTKVFDPDDDPL 185 (342)
T ss_dssp TTTTEEEEEEEGTS--------EEEEEEEETTEEEEEETTSCEEEEEETSTSSE----------E-EEEEEESSTTTS-B
T ss_pred CCCCceeeeecCCC--------EEEEEecCCCceEEEecCCceEEEEECCCCCE----------e-EeeccccCCCCccc
Confidence 76544332222111 11111123467777888888888888744321 1 11112222222222
Q ss_pred -EEEEEcCC-CCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCc--------CccceeEEEEccCCCeEEEEecCC--
Q 007489 279 -ICSTISNS-GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR--------KLQFAHSMIFSYDSSQLIIAGHDR-- 346 (601)
Q Consensus 279 -~~~~~s~~-g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~i~~s~d~~~l~~~~~dg-- 346 (601)
..-+++.. +.++..+-+|.|+-.++.. ....+.. ...+.. ..+.-.-+++++..++|++.-..|
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg---~~~~~~~-~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSG---DSAKFGK-PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETT---SSEEEEE-EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccC---CcccccC-cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 23344444 4566668888888888875 2211111 111111 012345678887666665533221
Q ss_pred --------cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEE-ecCCeEEEEEcCCceEEEEee
Q 007489 347 --------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAV-NCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 347 --------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~-~~dg~i~iwd~~~~~~~~~~~ 416 (601)
.|.++|+.+++.+..+.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+++....+.
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPL------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEE------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCccCCceEEEEEECCCCeEEEEEeC------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 489999999999998874 34588999999887 55554 457999999999999988877
Q ss_pred ccC
Q 007489 417 RLE 419 (601)
Q Consensus 417 ~~~ 419 (601)
.+.
T Consensus 330 ~lG 332 (342)
T PF06433_consen 330 QLG 332 (342)
T ss_dssp --S
T ss_pred ccC
Confidence 653
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.48 E-value=0.00023 Score=71.96 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=66.8
Q ss_pred eEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE------------------EecCC
Q 007489 338 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA------------------VNCFG 399 (601)
Q Consensus 338 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las------------------~~~dg 399 (601)
.+++++.+|.+..+|..+|+.+...... ...++.+| ..++. ...+|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV--------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee--------------ccccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence 5778888999999999999988766531 11123333 22222 12467
Q ss_pred eEEEEEcCCceEEEEeeccCC-------Cce--eEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 400 DVYIFNLEIQRQHWFISRLEG-------ASV--TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~-------~~v--~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.|.-.|+.+++.++....... .+. ..+.. .+..|++++.||.|+.+|.++++.
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCce
Confidence 899999999998887654310 111 12222 456899999999999999999974
No 318
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=7.6e-07 Score=86.79 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=105.1
Q ss_pred CcEEEEECCC--CceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCcc-chhhhccccccceEE
Q 007489 9 GYIRSWDAKL--GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG-TLLQAHSFHKGDVNA 83 (601)
Q Consensus 9 g~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~V~~ 83 (601)
..-.+|++.. .+.+.-+. .+|...|+.+-|.|.. .+++++.|..+..||+.+- .++..+..-...-..
T Consensus 91 qkaiiwnlA~ss~~aIef~l-------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq 163 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVL-------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ 163 (1081)
T ss_pred chhhhhhhhcCCccceEEEE-------ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence 3456787742 22232222 2899999999999988 7899999999999999864 445555544455678
Q ss_pred EEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccccc
Q 007489 84 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 163 (601)
Q Consensus 84 l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~ 163 (601)
++|+.....+.+.+..+.|.+||++.+.. ++..+.+|...|..++|. .--
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~----------------pl~s~K~~vs~vn~~~fn---------r~~----- 213 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGST----------------PLCSLKGHVSSVNSIDFN---------RFK----- 213 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCc----------------ceEEecccceeeehHHHh---------hhh-----
Confidence 99998665666667778899999998764 256677788888888875 111
Q ss_pred CCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCC
Q 007489 164 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH 208 (601)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~ 208 (601)
...+.+.+.|++|+.||.........+
T Consensus 214 ------------------~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 214 ------------------YSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ------------------hhhhcccCCCCceeeecccccccccce
Confidence 137889999999999998864444333
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=5.8e-05 Score=75.63 Aligned_cols=126 Identities=6% Similarity=0.018 Sum_probs=84.8
Q ss_pred CCCeEEEEEcCCCCEEEEE-cCCccEEEEeecC-CCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 275 SRKIICSTISNSGMLFAYS-DHVKPSLFELKKG-KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
..++.++++|.+-+.+|+| .+|.|.++.=+.. +.+.+. .-......+|+.+++..+++.++.+.....|.+|.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~ 199 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYS 199 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCCceeEEEEecceeEEEE
Confidence 4678889999998999997 7888888753321 112221 11223356899999999998743344456699999
Q ss_pred cCCCce-eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec
Q 007489 353 VSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 353 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 417 (601)
+....+ +..+.. |...+.|..+++...-+++++.. .|.+|+.+..+....+..
T Consensus 200 l~gr~p~~~~ld~-----------~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 200 LSGRTPSLKVLDN-----------NGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred ecCCCcceeeecc-----------CCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecC
Confidence 873332 333554 78889999998876645555444 499999987777666553
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.7e-07 Score=91.65 Aligned_cols=216 Identities=10% Similarity=0.124 Sum_probs=134.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCC--eEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vw~~~~~~ 111 (601)
.|....+|++|+-+. .|+.|+..|.|+++++.+|.......+|.++|+-+.-+.||..+++.+.-. ...+|+...-.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 788899999999777 999999999999999999999999999999999999999998887655432 46789876521
Q ss_pred CCCCCCCCCccccceeEEecCccccc-cceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 190 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 190 (601)
. ..|+ ..-.++.|+ ...+ .-+.|..
T Consensus 1179 --------------------~-~~Hsf~ed~~vkFs---------n~~q------------------------~r~~gt~ 1204 (1516)
T KOG1832|consen 1179 --------------------G-PRHSFDEDKAVKFS---------NSLQ------------------------FRALGTE 1204 (1516)
T ss_pred --------------------C-ccccccccceeehh---------hhHH------------------------HHHhccc
Confidence 1 1122 123455554 1111 2233444
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 270 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (601)
.....+||+.+...+...-....... ..-....|+|+..++. +..-+|+++..+.. ..+
T Consensus 1205 ~d~a~~YDvqT~~~l~tylt~~~~~~---y~~n~a~FsP~D~LIl---ndGvLWDvR~~~aI---------------h~F 1263 (1516)
T KOG1832|consen 1205 ADDALLYDVQTCSPLQTYLTDTVTSS---YSNNLAHFSPCDTLIL---NDGVLWDVRIPEAI---------------HRF 1263 (1516)
T ss_pred ccceEEEecccCcHHHHhcCcchhhh---hhccccccCCCcceEe---eCceeeeeccHHHH---------------hhh
Confidence 45778899988665443221111111 1114556888766654 34468888755321 111
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEE
Q 007489 271 KSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 271 ~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~ 341 (601)
..- ..-..-.|+|.|..++..+. |||+++ -..+ ...+.... +.+.|+..|..++.
T Consensus 1264 D~f--t~~~~G~FHP~g~eVIINSE----IwD~RT---F~lL-----h~VP~Ldq--c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1264 DQF--TDYGGGGFHPSGNEVIINSE----IWDMRT---FKLL-----HSVPSLDQ--CAVTFNSTGDVMYA 1318 (1516)
T ss_pred hhh--eecccccccCCCceEEeech----hhhhHH---HHHH-----hcCccccc--eEEEeccCccchhh
Confidence 100 01112348999999888665 888876 1111 11222122 67788887776543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=7.6e-05 Score=74.85 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=134.3
Q ss_pred EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc-eEEEEEeCCCCEEEEEeeCCe-----EEEEEeccCc
Q 007489 39 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD-VNALAAAPSHNRVFSTGSDGQ-----VILYKASCES 111 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~-----i~vw~~~~~~ 111 (601)
.|.| |++.+ .+|.|+.+|.|.+.+-. .+.++.++.+... |..+-...+..+|++.+.|.. +++|+++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 45666 99999999999998754 5566788887777 555544445578888887754 8999998653
Q ss_pred CCCCCCCCCccccceeEEecCcc-----ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVR-----AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
.... ........+. ..+.++.+++++ .+-+ .++
T Consensus 104 ~n~s---------P~c~~~~ri~~~~np~~~~p~s~l~Vs---------~~l~------------------------~Iv 141 (933)
T KOG2114|consen 104 KNNS---------PQCLYEHRIFTIKNPTNPSPASSLAVS---------EDLK------------------------TIV 141 (933)
T ss_pred CCCC---------cceeeeeeeeccCCCCCCCcceEEEEE---------cccc------------------------EEE
Confidence 2100 0111001111 124456677776 3332 888
Q ss_pred EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 187 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 187 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
+|-.+|.|..+...-... +. .
T Consensus 142 ~Gf~nG~V~~~~GDi~RD----------------------------------rg-------------------------s 162 (933)
T KOG2114|consen 142 CGFTNGLVICYKGDILRD----------------------------------RG-------------------------S 162 (933)
T ss_pred EEecCcEEEEEcCcchhc----------------------------------cc-------------------------c
Confidence 999999888876442000 00 0
Q ss_pred EEEEEecCCCCeEEEEEcCCCCE-EEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 267 LVQVKSKASRKIICSTISNSGML-FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
-..+......+|+.+++..+++. +.+.+...|.+|.+.. .+..+ ..+..+....+|..+++....+++++.
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g--r~p~~-----~~ld~~G~~lnCss~~~~t~qfIca~~- 234 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG--RTPSL-----KVLDNNGISLNCSSFSDGTYQFICAGS- 234 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC--CCcce-----eeeccCCccceeeecCCCCccEEEecC-
Confidence 11223344588999999998877 3446777899999984 22111 334555667888888876554666554
Q ss_pred CcEEEEEcCCCceeeeec
Q 007489 346 RRIYVVDVSSSELLHTFT 363 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~ 363 (601)
..+.+|+....++..+|.
T Consensus 235 e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 235 EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ceEEEEcCCCcceeeeec
Confidence 459999987666666666
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=1.5e-06 Score=77.02 Aligned_cols=130 Identities=10% Similarity=0.067 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEc
Q 007489 276 RKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~ 353 (601)
..|.+..|...+.++.. +.+|.|..+|++....+. .|... ...|...|+++..-. ++++|++.+.+|+|.+||+
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~-~~~a~---rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN-GWCAQ---RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-CcceE---EEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 55777777777777777 699999999999843333 23333 234667888887666 7889999999999999999
Q ss_pred CCCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 354 SSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 354 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
+--++ +.++.+|.+ ...-.-+...+....+++++.|...+||.++.+....+++..
T Consensus 329 R~~K~~~~V~qYeGHvN---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVN---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhhcccceeeeecccc---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 76666 788888432 122223445667778999999999999999999998887754
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=9.1e-05 Score=73.45 Aligned_cols=158 Identities=15% Similarity=0.037 Sum_probs=101.4
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEc---CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
...++... .....++++++|+++.++. .....+-.+...+.. .+.. .... . .-++.++|++..+
T Consensus 227 V~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vv---fni~----~--iea~vkdGK~~~V- 293 (635)
T PRK02888 227 VAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVV---FNIA----R--IEEAVKAGKFKTI- 293 (635)
T ss_pred EEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEE---EchH----H--HHHhhhCCCEEEE-
Confidence 44455544 3567788999999988742 211222222211100 0000 0000 0 0134567887766
Q ss_pred ecCCcEEEEEcCC-----CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceE-----
Q 007489 343 GHDRRIYVVDVSS-----SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ----- 411 (601)
Q Consensus 343 ~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~----- 411 (601)
.++.|.++|..+ .+.+..+. -......+.+||||+++++++ .+.+|.|+|+.+.+.
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIP------------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVP------------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEE------------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 367899999887 34555555 355678999999999987665 588999999987653
Q ss_pred -------EEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 412 -------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 412 -------~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
...+.. +......+|.+ ++....+-..|.+|..||++.
T Consensus 361 ~~~~~~vvaevev--GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL--GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc--CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 222222 44567789999 888888888999999999986
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.38 E-value=3.1e-05 Score=75.80 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=77.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh-----hc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-----AH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~-----~~ 74 (601)
+|+.|++-|.+.+|+-..|+. +.++.+ +-.+.+..+..+++. ++|.|+..|.|.++-++.+.+.. ..
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~-~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEM-RKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred eEEEecccceEEEEecCchhh-hccccc------CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 478999999999999665544 333321 345556666778888 77888889999999887643221 11
Q ss_pred -cccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc
Q 007489 75 -SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 75 -~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~ 109 (601)
+.|...|+|++|++++..+++|...|+|..-.++.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23788999999999999999999999999988887
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.00027 Score=69.51 Aligned_cols=122 Identities=17% Similarity=0.116 Sum_probs=91.2
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhc-cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.|...|.--++...+ +++.|++.|.+.+++-..+.....- .+-.+.+..++.+++..+++.|+..|.|.++.+.....
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 456667666777777 9999999999999998866654322 23455666777888888899999999999999887443
Q ss_pred CCCCCCCCccccceeEEecC-ccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
.... +... -..|...|++++|+ +|++ .+++|...
T Consensus 111 ~~~~------------~~t~~d~~~~~rVTal~Ws---------~~~~------------------------k~ysGD~~ 145 (726)
T KOG3621|consen 111 RDLD------------YVTPCDKSHKCRVTALEWS---------KNGM------------------------KLYSGDSQ 145 (726)
T ss_pred Ccce------------eeccccccCCceEEEEEec---------cccc------------------------EEeecCCC
Confidence 1111 1111 12378899999999 8887 99999999
Q ss_pred CeEEEEeccc
Q 007489 192 TKLFAYCANE 201 (601)
Q Consensus 192 ~~v~~~~~~~ 201 (601)
|+|....+..
T Consensus 146 Gkv~~~~L~s 155 (726)
T KOG3621|consen 146 GKVVLTELDS 155 (726)
T ss_pred ceEEEEEech
Confidence 9998877765
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=0.003 Score=61.47 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=61.2
Q ss_pred ccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEE
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI 403 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~i 403 (601)
...+.+++++|+...|+.|+.||.|.+||...+... +.. ..-.++.++|+|+|.++++|+..|.+.+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~k-----------a~~~P~~iaWHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAK-----------AEFIPTLIAWHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eee-----------ecccceEEEEcCCCcEEEEEcCCceEEE
Confidence 458899999999999999999999999998655322 222 4456789999999999999999999999
Q ss_pred EEcCCc
Q 007489 404 FNLEIQ 409 (601)
Q Consensus 404 wd~~~~ 409 (601)
||+.-.
T Consensus 326 FD~ALs 331 (545)
T PF11768_consen 326 FDMALS 331 (545)
T ss_pred EEeecC
Confidence 998543
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.4e-05 Score=77.64 Aligned_cols=185 Identities=12% Similarity=0.147 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 276 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
..+.|++++ +++++.| .+|.+++++... .. .....|... .-+|.++++|+.||+|.|-.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~----~~------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG----NP------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC----cc------ccccccccc------ccCCceEEEecCCCcEEEeecc
Confidence 345555554 4778874 778899988764 10 111112221 5689999999999999999998
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccC-----CCEEEEEecCCeEEEEEcCCceE--EEEeeccCCCceeEEE
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQWLAAVNCFGDVYIFNLEIQRQ--HWFISRLEGASVTAAG 427 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----~~~las~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~ 427 (601)
+.+...++. ...++.+++++|| .+.+++|+..| +.++.-.-... ...+.... ++|.++.
T Consensus 102 ~~~~~~~~d------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e-G~I~~i~ 167 (846)
T KOG2066|consen 102 TDDEITQYD------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE-GPIHSIK 167 (846)
T ss_pred CCccceeEe------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc-cceEEEE
Confidence 888777666 5678999999998 56889999988 88876432111 11233323 6899999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc-CceEEEEe
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS-ARAMCVID 503 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~-~~~~~~~~ 503 (601)
| .++++|-++.+| |+|||+..++.-... . .+.......-....+.|.++ +..++=|+ .=++|.+.
T Consensus 168 W---~g~lIAWand~G-v~vyd~~~~~~l~~i--~---~p~~~~R~e~fpphl~W~~~--~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 168 W---RGNLIAWANDDG-VKVYDTPTRQRLTNI--P---PPSQSVRPELFPPHLHWQDE--DRLVIGWGDSVKICSIK 233 (846)
T ss_pred e---cCcEEEEecCCC-cEEEeccccceeecc--C---CCCCCCCcccCCCceEecCC--CeEEEecCCeEEEEEEe
Confidence 9 468899998888 999999887631110 0 01100011123456788876 55555564 33455555
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=5.5e-07 Score=89.55 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=146.8
Q ss_pred chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecc
Q 007489 69 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 148 (601)
Q Consensus 69 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 148 (601)
+...+|..|...-+|++|+-+.++|+.|+..|.|++|++.+|.. ......|...|+.+.-+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------e~s~ncH~SavT~vePs-- 1152 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------EESVNCHQSAVTLVEPS-- 1152 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------ccccccccccccccccc--
Confidence 34566778999999999999999999999999999999999885 56778899988888754
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC-eEEEEeccccCCcCCCccCCCCCccceeeeecccc
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF 227 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (601)
.||. -+|.+++... -..+|++..... ..|.
T Consensus 1153 -------~dgs-----------------------~~Ltsss~S~PlsaLW~~~s~~~-~~Hs------------------ 1183 (1516)
T KOG1832|consen 1153 -------VDGS-----------------------TQLTSSSSSSPLSALWDASSTGG-PRHS------------------ 1183 (1516)
T ss_pred -------CCcc-----------------------eeeeeccccCchHHHhccccccC-cccc------------------
Confidence 4543 1344443333 445666553100 0000
Q ss_pred CCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecC
Q 007489 228 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKG 306 (601)
Q Consensus 228 ~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~ 306 (601)
-..-.++.|+...++-+. .......+||+.+
T Consensus 1184 -----------------------------------------------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT- 1215 (1516)
T KOG1832|consen 1184 -----------------------------------------------FDEDKAVKFSNSLQFRALGTEADDALLYDVQT- 1215 (1516)
T ss_pred -----------------------------------------------ccccceeehhhhHHHHHhcccccceEEEeccc-
Confidence 012335556554433333 3345678999987
Q ss_pred CCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc
Q 007489 307 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 386 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 386 (601)
+..+...-...... .-.-+...|+|+..+++ .|| .+||++..+.++.|.. ... -..=.|+
T Consensus 1216 --~~~l~tylt~~~~~-~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~-----------ft~-~~~G~FH 1275 (1516)
T KOG1832|consen 1216 --CSPLQTYLTDTVTS-SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQ-----------FTD-YGGGGFH 1275 (1516)
T ss_pred --CcHHHHhcCcchhh-hhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhh-----------hee-ccccccc
Confidence 33321100111111 11226778999988775 466 5899988888887775 231 2233699
Q ss_pred cCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEE
Q 007489 387 SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 387 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
|+|.-++.-+ .|||+.+.+....++.+. -..+.|+. .|..+...
T Consensus 1276 P~g~eVIINS-----EIwD~RTF~lLh~VP~Ld---qc~VtFNs-tG~VmYa~ 1319 (1516)
T KOG1832|consen 1276 PSGNEVIINS-----EIWDMRTFKLLHSVPSLD---QCAVTFNS-TGDVMYAM 1319 (1516)
T ss_pred CCCceEEeec-----hhhhhHHHHHHhcCcccc---ceEEEecc-Cccchhhh
Confidence 9999888765 489999998876766654 36678998 88766544
No 329
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.26 E-value=9.6e-06 Score=79.42 Aligned_cols=219 Identities=11% Similarity=0.115 Sum_probs=138.1
Q ss_pred EEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEeecCCCC
Q 007489 233 LLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 233 ~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
.+++. ...-.+|++...... .+.-...+|...|+.+.|.|.. ..+++ +-|..+..|+++...
T Consensus 84 wiVsts~qkaiiwnlA~ss~~-------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-- 148 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSN-------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-- 148 (1081)
T ss_pred eEEecCcchhhhhhhhcCCcc-------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--
Confidence 44443 366778888765533 3555567788999999999977 45666 689999999998722
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEcc-
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSS- 387 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp- 387 (601)
..+ .....-......+.|+--..-+.+.+....|++||+..| .++..+++ |...|..+.|..
T Consensus 149 ~p~-----ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~-----------~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 149 RPF-----YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG-----------HVSSVNSIDFNRF 212 (1081)
T ss_pred cce-----eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-----------cceeeehHHHhhh
Confidence 222 111122335577888874444445566778999999665 47788887 888888888854
Q ss_pred CCCEEEEEecCCeEEEEEcCCceEE--EEeeccCCCceeEEEecCC-CCCEEEEEeCCCeEEEEEcCCCCcccchhcccC
Q 007489 388 DGQWLAAVNCFGDVYIFNLEIQRQH--WFISRLEGASVTAAGFPPQ-NNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTF 464 (601)
Q Consensus 388 d~~~las~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 464 (601)
....+.+.+.||+|+.||.+..... ..++ ...+|+.-.+.|. ++.++.-.-.++.+.+++-+... ..|-.....
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d-~e~n~~~~~ 289 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD-LEWNVFDLN 289 (1081)
T ss_pred hhhhhcccCCCCceeeecccccccccceecc--ccCcceeccccccCceeEeccccCCeeeeeccccchh-hhhccccCC
Confidence 2345778899999999998754322 2222 2356777777772 22222222223355555544432 233333233
Q ss_pred CcCcccccCCCcEEEEEeCCC
Q 007489 465 VLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 465 ~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.....|.||.+.|....|...
T Consensus 290 ~pVh~F~GH~D~V~eFlWR~r 310 (1081)
T KOG0309|consen 290 TPVHTFVGHDDVVLEFLWRKR 310 (1081)
T ss_pred cceeeecCcchHHHHHhhhhc
Confidence 345678899988888777553
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00013 Score=72.68 Aligned_cols=177 Identities=13% Similarity=0.135 Sum_probs=121.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|+-|..+|.|++.+.. |.. .+.. .|... .-+| +++||+.||+|.|-.+-+.+...++.- ..
T Consensus 51 ~~~~GtH~g~v~~~~~~-~~~-~~~~--------~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~r 113 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQ-GNP-KTNF--------DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KR 113 (846)
T ss_pred eeeeccccceEEEEecC-Ccc-cccc--------ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-CC
Confidence 46778888888888865 444 3332 34433 4467 999999999999999988887777663 56
Q ss_pred ceEEEEEeCC-----CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 80 DVNALAAAPS-----HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 80 ~V~~l~~s~~-----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
++.+++++|+ .+.+++||.-| +.++.-+=-.. |. ...+..-.+.|.++.|.
T Consensus 114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--------------k~-~v~l~~~eG~I~~i~W~-------- 169 (846)
T KOG2066|consen 114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--------------KD-SVVLSEGEGPIHSIKWR-------- 169 (846)
T ss_pred cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--------------cc-ceeeecCccceEEEEec--------
Confidence 9999999997 57899999888 77765332110 00 11234446788999885
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
| ++++-++.+ -|++||....+.+...+... ....+......+.|.++.+++
T Consensus 170 ---g------------------------~lIAWand~-Gv~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 170 ---G------------------------NLIAWANDD-GVKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred ---C------------------------cEEEEecCC-CcEEEeccccceeeccCCCC-CCCCcccCCCceEecCCCeEE
Confidence 1 255555554 47889988765544333222 233333455677788999999
Q ss_pred EEeCCeeEEeecc
Q 007489 235 VQYSCRLDILSVR 247 (601)
Q Consensus 235 ~~~~~~i~i~~~~ 247 (601)
...+.+|.|..+.
T Consensus 221 IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 221 IGWGDSVKICSIK 233 (846)
T ss_pred EecCCeEEEEEEe
Confidence 9999999999988
No 331
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.21 E-value=0.011 Score=61.15 Aligned_cols=154 Identities=9% Similarity=0.150 Sum_probs=100.9
Q ss_pred eEEEEEcCC-CCEEEEEc-----------CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 278 IICSTISNS-GMLFAYSD-----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 278 i~~~~~s~~-g~~l~~~~-----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
+.++.|..| +.++++|. .|.|.+|.... ...+-.+...... +.+.++.. -+|+++| +-+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e---~~~L~~v~e~~v~---Gav~aL~~-fngkllA--~In 847 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE---LNSLELVAETVVK---GAVYALVE-FNGKLLA--GIN 847 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec---CCceeeeeeeeec---cceeehhh-hCCeEEE--ecC
Confidence 444557766 56666642 36677777764 2232112222222 24444432 2566654 456
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce--EEEEeeccCCCce
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR--QHWFISRLEGASV 423 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v 423 (601)
..|++|+..+.+.++.-.. +..++..+...-.|..+|+|+.-+.+.+......+ ....-...+..+.
T Consensus 848 ~~vrLye~t~~~eLr~e~~-----------~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wm 916 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECN-----------ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWM 916 (1096)
T ss_pred cEEEEEEccccceehhhhc-----------ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccce
Confidence 7899999987766655554 77788889888899999999999988776655444 5544455566788
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 424 TAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+++.+-. .+..+.+..+|.+++-..++.
T Consensus 917 taveil~--~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 917 TAVEILD--DDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred eeEEEec--CceEEeecccccEEEEEecCC
Confidence 8888874 556677778888888877644
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.19 E-value=0.0012 Score=58.94 Aligned_cols=207 Identities=11% Similarity=0.161 Sum_probs=112.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
..+..++|.|+...|++-.|..-.|+.++. .+.. +.+..+.+ ....-.|++..++.++++--.++.+.++++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~v---lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKV---LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--E---EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCE---EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 569999999987766665555566677775 2433 33344444 34567888888887666655689999999843
Q ss_pred Cc-e-----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC---ceEEEEe-----e--ccC
Q 007489 356 SE-L-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI---QRQHWFI-----S--RLE 419 (601)
Q Consensus 356 ~~-~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~---~~~~~~~-----~--~~~ 419 (601)
.. . ...+.-.. ...++..+-.++|+|.++.|+.+-...-..||.+.. ....... . ...
T Consensus 96 ~~~~~~~~~~~~~~l~~------~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGF------PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp --TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred cccccchhhceEEeccc------ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 21 1 11222100 011556689999999888877777766677777654 1111110 0 112
Q ss_pred CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccccc---CCCcEEEEEeCCCCCCCEEEEEcC
Q 007489 420 GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE---FPGEVIGLSFSPSPSSSSVIIYSA 496 (601)
Q Consensus 420 ~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~~~~~~~~~ 496 (601)
...+.+++++|.++.+++.+..+..|.++|.+..-...++ +...+.+ .-...-+|+|+++ ++..++.-+
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~------L~~g~~gl~~~~~QpEGIa~d~~--G~LYIvsEp 241 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLS------LDRGFHGLSKDIPQPEGIAFDPD--GNLYIVSEP 241 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-------STTGGG-SS---SEEEEEE-TT----EEEEETT
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEE------eCCcccCcccccCCccEEEECCC--CCEEEEcCC
Confidence 2467899999977778888888999999995544222111 1111111 1135889999998 344444456
Q ss_pred ceEEEE
Q 007489 497 RAMCVI 502 (601)
Q Consensus 497 ~~~~~~ 502 (601)
+-+++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 666655
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.14 E-value=2.2e-05 Score=75.66 Aligned_cols=105 Identities=10% Similarity=0.195 Sum_probs=75.9
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
....|.+++++|+...|+.|+.||.|.+||...+..... . ..-.++.++|+| ++.++++|+..|.+.+||+.-...
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k-a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K-AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e-ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCcc
Confidence 678899999999999999999999999999987754322 2 224689999999 999999999999999999864422
Q ss_pred cc------chhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 456 GE------WSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 456 ~~------~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.- .......++.. +-.+......+.|.+.
T Consensus 334 ~~qLlsEd~~P~~~L~Ls~-yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 334 KMQLLSEDATPKSTLQLSK-YFRVSSSLVHIQWAPA 368 (545)
T ss_pred ceeeccccCCCccEEeeeh-hccCcchhheeEeccC
Confidence 11 00111111222 2234566778888844
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=6.1e-05 Score=75.90 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=127.2
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEE
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 129 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 129 (601)
.++-|+-...+...|+.+.+..+...-..+.|.-|+. +++++++|...|+|.+-|.++.+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~----------------- 209 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET----------------- 209 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce-----------------
Confidence 5666766677888888877766665544445666665 588999999999999999998775
Q ss_pred ecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC---------CeEEEEecc
Q 007489 130 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD---------TKLFAYCAN 200 (601)
Q Consensus 130 ~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------~~v~~~~~~ 200 (601)
...+..|++.|.++.+. | +.|+++|.. ..|++||++
T Consensus 210 iht~~aHs~siSDfDv~-----------G------------------------NlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 210 IHTFDAHSGSISDFDVQ-----------G------------------------NLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred eeeeeccccceeeeecc-----------C------------------------CeEEEeecccccccccccchhhhhhhh
Confidence 78899999999998864 2 388888854 468899999
Q ss_pred ccCCcCCCccCCCCCccceeeeeccccCC---CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 201 EFTKFSPHEICPAPQRVPIHLVHNTIFSH---TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
....+.+......|+ -+.|.| ....+++.+|...+-+...... +..-.....+....
T Consensus 255 mmral~PI~~~~~P~--------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN------------P~~~~~~v~p~~s~ 314 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQ--------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSN------------PPAGVKMVNPNGSG 314 (1118)
T ss_pred hhhccCCcccccCch--------hhhhcccccceEEEEecccceeeccccccCC------------CccceeEEccCCCc
Confidence 988777766555442 223344 3445556667777766322211 11222233333456
Q ss_pred eEEEEEcCCCCEEEEE-cCCccEEEEe
Q 007489 278 IICSTISNSGMLFAYS-DHVKPSLFEL 303 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~-~~~~v~l~~~ 303 (601)
+..+.+|++|+.+|.+ .+|.|.+|.-
T Consensus 315 i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 315 ISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ceeEEecCCCceEEEecccCcEeeecC
Confidence 9999999999999995 8899999983
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.0033 Score=60.79 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=40.1
Q ss_pred CCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 57 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 57 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
.+.+.|+|+.+++....... ...+....|||+|+.++... ++.|.+++..++.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 46799999998765544443 67889999999999998775 6889999876654
No 336
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.11 E-value=3.2e-05 Score=77.79 Aligned_cols=179 Identities=12% Similarity=0.073 Sum_probs=119.8
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
++.|+--..+..+|+.+++..+...++ ...|.-++ .++ .+.+|+..|+|.+-|..+.+.+.++..|++.
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--------a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVS--------ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeecc--------CCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccc
Confidence 455666667888888887777766632 22244444 355 7889999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEee---------CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 81 VNALAAAPSHNRVFSTGS---------DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
|..+.. .|+.|+++|. |.-|+|||++..+. +..+..+..+ .-+.|.|.+.
T Consensus 220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----------------l~PI~~~~~P-~flrf~Psl~- 278 (1118)
T KOG1275|consen 220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----------------LSPIQFPYGP-QFLRFHPSLT- 278 (1118)
T ss_pred eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-----------------cCCcccccCc-hhhhhccccc-
Confidence 987666 5999999984 66689999988653 2222222221 2223331111
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
..++.++..|...+.|..+... +........+....+..+.+++++
T Consensus 279 -------------------------------t~~~V~S~sGq~q~vd~~~lsN---P~~~~~~v~p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 279 -------------------------------TRLAVTSQSGQFQFVDTATLSN---PPAGVKMVNPNGSGISAFDISSNG 324 (1118)
T ss_pred -------------------------------ceEEEEecccceeeccccccCC---CccceeEEccCCCcceeEEecCCC
Confidence 2778888888888877443221 111111122233447788889999
Q ss_pred EEEEEeC--CeeEEee
Q 007489 232 LLLVQYS--CRLDILS 245 (601)
Q Consensus 232 ~~l~~~~--~~i~i~~ 245 (601)
..++.++ +.+.+|.
T Consensus 325 ~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEecccCcEeeec
Confidence 9888876 8899998
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.09 E-value=0.0023 Score=60.00 Aligned_cols=157 Identities=16% Similarity=0.209 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCC-CEEEEEcCC-----ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec----
Q 007489 275 SRKIICSTISNSG-MLFAYSDHV-----KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---- 344 (601)
Q Consensus 275 ~~~i~~~~~s~~g-~~l~~~~~~-----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---- 344 (601)
...+..+.+||.. .+|+.|..| .-|||-++. .+...+.+.... ....+..=-|.|||+.|..-+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v~~~~---~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKVHRRM---EGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceeeecCC---CCcccccccccCCCCEEEEEeecCCC
Confidence 4677888899965 455556433 238999987 344433333221 1345556679999988765333
Q ss_pred -CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC----------------CeEEEEEcC
Q 007489 345 -DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF----------------GDVYIFNLE 407 (601)
Q Consensus 345 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d----------------g~i~iwd~~ 407 (601)
+..|.-+|+.+++...... ......+-.++||++++-=+.| -.|++++++
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~-------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLME-------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp --EEEEEE-TTT--EEEEEE-------------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred CceEEEeeCCCCCCceEEEe-------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 3357777888776533222 2235567778999988643333 156778888
Q ss_pred CceEEEEeeccC-------C-C--ceeEEEecCCCCCEEEEE-eCCCeEEEEEcC
Q 007489 408 IQRQHWFISRLE-------G-A--SVTAAGFPPQNNNVLIIT-TSSNQVYVFDVE 451 (601)
Q Consensus 408 ~~~~~~~~~~~~-------~-~--~v~~l~~~p~~~~~l~~~-~~dg~v~vwd~~ 451 (601)
.+..... ..+. + . .=-...|+| |+++++.. ...|...||=++
T Consensus 329 ~~~~~~l-~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 329 AGRFRKL-ARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTEEEEE-EE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred cCceeee-eeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 7765422 2111 0 0 123578999 88876654 456776666543
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.06 E-value=0.0007 Score=67.41 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=95.4
Q ss_pred EEccCCCeEEEEe-cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-------------
Q 007489 331 IFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN------------- 396 (601)
Q Consensus 331 ~~s~d~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~------------- 396 (601)
=++|||+.+...+ ..+.+.+.|.++.+...++.. ......++++|||+++++.+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V------------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~ 266 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV------------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMM 266 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEe------------CCCcccceECCCCCEEEEeccCcccCcceeeec
Confidence 3455666553332 246677888887776666553 22344566777777766554
Q ss_pred ---------------------------cCCeEEEEEcCC-----ceEEEEeeccCCCceeEEEecCCCCCEEEEEeC-CC
Q 007489 397 ---------------------------CFGDVYIFNLEI-----QRQHWFISRLEGASVTAAGFPPQNNNVLIITTS-SN 443 (601)
Q Consensus 397 ---------------------------~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~-dg 443 (601)
.++.|.+.|..+ .+....++. +..+..+.++| |++++++++. ++
T Consensus 267 a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSP-DGkylyVanklS~ 343 (635)
T PRK02888 267 AAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSP-DGKYFIANGKLSP 343 (635)
T ss_pred cccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECC-CCCEEEEeCCCCC
Confidence 234578888777 345555654 34788999999 9998887764 89
Q ss_pred eEEEEEcCCCCcccchhccc-CCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 444 QVYVFDVEAKQLGEWSMQHT-FVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 444 ~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
+|.|+|+++.+..--.+... ..+..+.. -.......+|+++| ....-++-++.++.+++..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeec-cCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 99999998754100000000 00111111 12345677888773 2344466677888888765
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00018 Score=72.09 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=82.2
Q ss_pred EEEeeCC-eEEEEc----CCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCC
Q 007489 43 LLSLRCG-TLVSAD----STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 117 (601)
Q Consensus 43 v~~s~~g-~l~s~~----~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 117 (601)
..|+|.. .++.++ ..|.|.|+- .+|++..... -.-.++++||+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----- 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----- 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-----
Confidence 4678877 665554 468888884 4577554333 123356799999988889998899999999887653
Q ss_pred CCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEE
Q 007489 118 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 197 (601)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~ 197 (601)
-.....|+.+|..+.|+ ++|. .++++..-|.|.+|
T Consensus 94 ------------htv~~th~a~i~~l~wS---------~~G~------------------------~l~t~d~~g~v~lw 128 (1416)
T KOG3617|consen 94 ------------HTVVETHPAPIQGLDWS---------HDGT------------------------VLMTLDNPGSVHLW 128 (1416)
T ss_pred ------------eeeccCCCCCceeEEec---------CCCC------------------------eEEEcCCCceeEEE
Confidence 33446789999999998 8886 99999999999999
Q ss_pred eccccC
Q 007489 198 CANEFT 203 (601)
Q Consensus 198 ~~~~~~ 203 (601)
......
T Consensus 129 r~d~~g 134 (1416)
T KOG3617|consen 129 RYDVIG 134 (1416)
T ss_pred Eeeecc
Confidence 877533
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.02 E-value=0.0058 Score=59.15 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=99.3
Q ss_pred EEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC
Q 007489 279 ICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS 356 (601)
Q Consensus 279 ~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~ 356 (601)
..+-|||||++||. -++..++.+.+........ ..+.+..+.+-.-|.-.. .-.+.|+|+.++
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~ 168 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAGDPNP----RVSLFVVDLASG 168 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTTS-------EEEEEEEESSST
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----------cCCcccccccCCCCCcCC----ceEEEEEECCCC
Confidence 46789999999998 4777888777654111100 122344444432232211 123677888777
Q ss_pred ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE--ecC---CeEEEEEcCCceEEEEeeccCCCc---eeEEEe
Q 007489 357 ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV--NCF---GDVYIFNLEIQRQHWFISRLEGAS---VTAAGF 428 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~---v~~l~~ 428 (601)
+.. .+.... ........+..+.|+++++.|+.. +.+ ..+.++|..++............. -....|
T Consensus 169 ~~~-~~~~~~-----~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 169 KTT-ELDPPN-----SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp CCC-EE---H-----HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred cEE-Eeeecc-----ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 653 111110 000035668999999999944433 332 247777887776554443322222 235555
Q ss_pred c-CCCCCEEEEEeCCC--eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEE-EEeCCCCCCCEEEEEc------Cce
Q 007489 429 P-PQNNNVLIITTSSN--QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIG-LSFSPSPSSSSVIIYS------ARA 498 (601)
Q Consensus 429 ~-p~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-i~~~p~~~~~~~~~~~------~~~ 498 (601)
. +++..+|.....|| .|++++..++.. +.+......|.+ +.|+++ .+.|++.+ ...
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~------------~~lT~G~~~V~~i~~~d~~--~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGKP------------RQLTSGDWEVTSILGWDED--NNRIYFTANGDNPGERH 308 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSEE------------EESS-SSS-EEEEEEEECT--SSEEEEEESSGGTTSBE
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccce------------eccccCceeecccceEcCC--CCEEEEEecCCCCCceE
Confidence 4 52555666666776 456666666652 223344456755 567776 55665553 236
Q ss_pred EEEEeCC
Q 007489 499 MCVIDFG 505 (601)
Q Consensus 499 ~~~~~~~ 505 (601)
++.+++.
T Consensus 309 lY~v~~~ 315 (353)
T PF00930_consen 309 LYRVSLD 315 (353)
T ss_dssp EEEEETT
T ss_pred EEEEEeC
Confidence 7777765
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.0009 Score=65.55 Aligned_cols=144 Identities=10% Similarity=0.141 Sum_probs=85.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 275 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
...+..+.++|+|++++++.+|.-.||.... .. - . ..+....++|.+.+ .+|+-..+++|.|+.--
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~----~r---~--k----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALA----WR---N--K----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNF 97 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTT----TE---E--E----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETT
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccC----Cc---c--c----ccCceeEEEEecCc-cEEEEECCCeEEEEEcC
Confidence 3557899999999999999999888887322 11 0 0 12345678899855 57777778889997533
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCC
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
+.+....+.. ...+..|.. |.+|+..+.+ .|.+||.++++....+.. .+|..+.|++ +++
T Consensus 98 ~~~~~k~i~~------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~-~g~ 157 (443)
T PF04053_consen 98 KNEVVKSIKL------------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSD-DGE 157 (443)
T ss_dssp EE-TT-----------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-T-TSS
T ss_pred ccccceEEcC------------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEEC-CCC
Confidence 3333334443 223455544 8888777655 799999999998777653 3589999999 999
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 007489 435 VLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~ 453 (601)
+++..+.+ .++|++.+..
T Consensus 158 ~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 158 LVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp EEEEE-S--SEEEEEE-HH
T ss_pred EEEEEeCC-eEEEEEecch
Confidence 99988866 5888776554
No 342
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.01 E-value=0.024 Score=57.64 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCcEEEeeCCccchhhhccccc-cceE---E-------EEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 48 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVN---A-------LAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 48 ~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~V~---~-------l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
+++|+.++.++.|.-.|..+|+.+-++.... ..+. + +++ .+..++.++.|+.+...|..+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 5678888888999999999999886654211 1111 1 122 245677888899999999999873
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.026 Score=57.50 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=65.6
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCce--EE-EEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccc--
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL--CI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF-- 76 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~--~V-~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 76 (601)
|+.++.++.|.-.|..+|+.+.++............. .+ ..+++. +++++.++.|+.|.-.|..+|+.+-....
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeeccccc
Confidence 5677788899999999999998887421100000000 00 112222 45788888999999999999998765542
Q ss_pred ccc--ceEEEEEeCCCCEEEEEe------eCCeEEEEEeccCcC
Q 007489 77 HKG--DVNALAAAPSHNRVFSTG------SDGQVILYKASCESI 112 (601)
Q Consensus 77 h~~--~V~~l~~s~~~~~l~s~~------~dg~i~vw~~~~~~~ 112 (601)
+.. .+.+--.-.++ .++.+. .+|.|..+|.++++.
T Consensus 151 ~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 151 YKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 111 12111111134 455443 368999999999874
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00039 Score=63.59 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=67.9
Q ss_pred cCCcCccceeEEEEccCCC-eEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEe
Q 007489 319 QLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVN 396 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~ 396 (601)
.++.+...|..++|||... ++..++.+..|.|.|+++...+..+.. + ..+++++|.-|. ++|++|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-----------~-~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-----------Y-NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-----------c-CCceeeeeccCCcceeEEec
Confidence 4566677899999999776 788899999999999999888888876 4 789999998765 4788899
Q ss_pred cCCeEEEEEcCCce
Q 007489 397 CFGDVYIFNLEIQR 410 (601)
Q Consensus 397 ~dg~i~iwd~~~~~ 410 (601)
.+|.|.|||+...+
T Consensus 256 ~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPE 269 (463)
T ss_pred cCceEEEEEccCCC
Confidence 99999999997554
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.012 Score=52.70 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=92.2
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecC--C-cCccceeEEEEccCCCeEEEE
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQL--P-RKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~i~~s~d~~~l~~~ 342 (601)
+.++...+....-.+++..++.++++. .++.+.++++.........-+.....+ . .+...+-.++|.|.++.|+++
T Consensus 56 lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~ 135 (248)
T PF06977_consen 56 LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA 135 (248)
T ss_dssp EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE
Confidence 444444445667788888888877775 578888888854222222211122221 2 344578999999998888888
Q ss_pred ecCCcEEEEEcCC---CceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 343 GHDRRIYVVDVSS---SELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 343 ~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
-...-..+|.+.. ...+....... . .........+.+++++|. +++++.++.+..|.++|. .++....+.-.
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~ 211 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQD-L--DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLD 211 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HH-H--H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-S
T ss_pred eCCCChhhEEEccccCccceeeccccc-c--ccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeC
Confidence 8777777777653 11111111000 0 001114456889999996 456677778888999994 44444333322
Q ss_pred C---C-----CceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 419 E---G-----ASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 419 ~---~-----~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
. + ...-.|+|.+ +|+ |..+++-+..++|
T Consensus 212 ~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 212 RGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp TTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred CcccCcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 1 1 3577899999 885 5666677777766
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.03 Score=55.01 Aligned_cols=210 Identities=11% Similarity=0.135 Sum_probs=109.5
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec--CCcCccceeEEEEccCCCeEEEEe
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ--LPRKLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~s~d~~~l~~~~ 343 (601)
++.++.... +.+.++.|+.+..++++..+|.+++|++.. ...+.+.... ..-....+....+..+| +++-.
T Consensus 72 ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G----~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt 144 (410)
T PF04841_consen 72 LLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFG----EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLT 144 (410)
T ss_pred EeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCC----ceeechhhhccccCcccccccccccCCCC--EEEEC
Confidence 555666665 789999999998899889999999999863 1111111000 00001122223343455 44445
Q ss_pred cCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCc
Q 007489 344 HDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS 422 (601)
Q Consensus 344 ~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 422 (601)
.++.+.+.+-.... ..+.+.... ........+.....-..++.+....+....++.+.+.+-...+. +. ..++
T Consensus 145 ~~~~~~~v~n~~~~~~~~~~~~~p-~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~ 218 (410)
T PF04841_consen 145 GNNRFYVVNNIDEPVKLRRLPEIP-GLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGP 218 (410)
T ss_pred CCCeEEEEeCccccchhhccccCC-CcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCCC
Confidence 56666555432221 111111000 00000000111111134555666666666666666554333221 22 1258
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccccc-CCCcEEEEEeCCCCCCCEEEEEcCceEEE
Q 007489 423 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE-FPGEVIGLSFSPSPSSSSVIIYSARAMCV 501 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~~~~~ 501 (601)
+..|++|| ++++||.-..+|.+.|.+.+-.+. ...+.. -...+..+.|.-+ +.-++.| .+.+.+
T Consensus 219 i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~-----------~~e~~~~~~~~p~~~~WCG~--dav~l~~-~~~l~l 283 (410)
T PF04841_consen 219 IIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEK-----------LCEFDTDSKSPPKQMAWCGN--DAVVLSW-EDELLL 283 (410)
T ss_pred eEEEEECC-CCCEEEEEECCCCEEEEECcccce-----------eEEeecCcCCCCcEEEEECC--CcEEEEe-CCEEEE
Confidence 99999999 999999999999998887654431 111111 2345677777754 3344444 444544
Q ss_pred Ee
Q 007489 502 ID 503 (601)
Q Consensus 502 ~~ 503 (601)
+.
T Consensus 284 vg 285 (410)
T PF04841_consen 284 VG 285 (410)
T ss_pred EC
Confidence 44
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.016 Score=56.07 Aligned_cols=269 Identities=13% Similarity=0.133 Sum_probs=129.5
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCC-CC---CCC----------------------CccccceeEEecCc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP-ND---GLS----------------------SSEVIKKWIYVGSV 133 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~-~~---~~~----------------------~~~~~~~~~~~~~~ 133 (601)
.|+.+.|+++..-|+.|...|.|.+|.....+... .+ .+. ......-+.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999887654321 00 000 00111223333344
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~ 213 (601)
....+.|.+++.+ . -.+++.|..+|.+.+.|++....+....
T Consensus 83 ~~~~g~vtal~~S---------~-------------------------iGFvaigy~~G~l~viD~RGPavI~~~~---- 124 (395)
T PF08596_consen 83 DAKQGPVTALKNS---------D-------------------------IGFVAIGYESGSLVVIDLRGPAVIYNEN---- 124 (395)
T ss_dssp ---S-SEEEEEE----------B-------------------------TSEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred eccCCcEeEEecC---------C-------------------------CcEEEEEecCCcEEEEECCCCeEEeecc----
Confidence 4446677777764 1 2399999999999999998632111100
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc-----CCC-
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-----NSG- 287 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~g- 287 (601)
+.. . .........++++.|+ .|+
T Consensus 125 -------------i~~-----------------~---------------------~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 125 -------------IRE-----------------S---------------------FLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp -------------GGG----------------------------------------T-SS----EEEEEEEEEE-TTSSS
T ss_pred -------------ccc-----------------c---------------------ccccccccCeeEEEEEEEecCCCcc
Confidence 000 0 0000011234444443 222
Q ss_pred --CEEEE-EcCCccEEEEeecCCCCcceEEEeeecC-CcCccceeEEE-EccC-C-------------------CeEEEE
Q 007489 288 --MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQL-PRKLQFAHSMI-FSYD-S-------------------SQLIIA 342 (601)
Q Consensus 288 --~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~-~s~d-~-------------------~~l~~~ 342 (601)
-.+.+ ...|.+.+|.+....++ -|.+.-... ..+.+.+..|. |+.+ | .-+++.
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g--~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNG--RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG---EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred cceEEEEEeCCCCEEEEEEecCCCC--ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 13333 46788888888642222 233222111 23334444443 3221 1 123344
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEE-----ccCCCEEEEEecCCeEEEEEcCCceEEEEeec
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT-----SSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-----spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 417 (601)
..+..++++...+.+..+.... .......+++ ...+..|++-..+|.|++|.+...+.+..+.-
T Consensus 232 vSe~~irv~~~~~~k~~~K~~~-----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSFD-----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE-S-----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EcccceEEEeCCCCcccceeec-----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 4467799999887766544432 2222333444 23567888889999999999999887766554
Q ss_pred cCC---CceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 418 LEG---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 418 ~~~---~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
... ..+...++++ +|+.++-.+ ...+.++.+-.
T Consensus 301 ~~~~d~~~~~~ssis~-~Gdi~~~~g-psE~~l~sv~~ 336 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISR-NGDIFYWTG-PSEIQLFSVWG 336 (395)
T ss_dssp SS---HHHHTT-EE-T-TS-EEEE-S-SSEEEEEEEES
T ss_pred CCccccccccccEECC-CCCEEEEeC-cccEEEEEEEc
Confidence 221 2345567788 888666554 44566665543
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00059 Score=66.60 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCEEEE-E--cC--CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCc-
Q 007489 275 SRKIICSTISNSGMLFAY-S--DH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRR- 347 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~-~--~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~- 347 (601)
...+..-+|+|+++.++. . .. ..+.++++.... ...+ ....+ .-..-+|+|||++|+.+.. ||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i-----~~~~g---~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI-----LNFNG---NNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee-----eccCC---ccCCccCCCCCCEEEEEECCCCCc
Confidence 355677889999988776 2 22 247777777622 1111 11222 2245589999998876654 454
Q ss_pred -EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CC--eEEEEEcCCceEEEEeeccCCCce
Q 007489 348 -IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG--DVYIFNLEIQRQHWFISRLEGASV 423 (601)
Q Consensus 348 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v 423 (601)
|+++|+..++. ..+.. ..+.-+.-.|+|||++|+..+. .| .|.+++.++........... .-
T Consensus 263 ~iy~~dl~~~~~-~~Lt~-----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~--~~ 328 (425)
T COG0823 263 DIYLMDLDGKNL-PRLTN-----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG--GN 328 (425)
T ss_pred cEEEEcCCCCcc-eeccc-----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC--CC
Confidence 77778876653 33433 2233336789999999986654 44 47777888777643333322 22
Q ss_pred eEEEecCCCCCEEEEEeCC-Ce--EEEEEcCCCC
Q 007489 424 TAAGFPPQNNNVLIITTSS-NQ--VYVFDVEAKQ 454 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~d-g~--v~vwd~~~~~ 454 (601)
..-.|+| |+++|+..+.. |. |.+.|+.++.
T Consensus 329 ~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 329 SNPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence 2678999 99999888753 44 6666665554
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.87 E-value=0.0017 Score=67.35 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=79.7
Q ss_pred eEEEEEecCCCCeEEEEEcC------CCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeE
Q 007489 266 LLVQVKSKASRKIICSTISN------SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~------~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l 339 (601)
.+.+........|..++-.. +.+.++.-+++.+..||.+. .+.++..-..... .......|++-+.+| +|
T Consensus 516 VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~--~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-~i 591 (794)
T PF08553_consen 516 VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL--SGNKLVDSQSKQY-SSKNNFSCFATTEDG-YI 591 (794)
T ss_pred EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCC--CCCceeecccccc-ccCCCceEEEecCCc-eE
Confidence 55566665545455554321 22344445777888888886 2333321111111 234467888888777 89
Q ss_pred EEEecCCcEEEEEcCCCceee-eeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 340 IIAGHDRRIYVVDVSSSELLH-TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
|+|+.+|.||+||-- |+.-+ .|.+ ...+|.+|..+.||+||++.+.. .+.++++
T Consensus 592 avgs~~G~IRLyd~~-g~~AKT~lp~-----------lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRL-GKRAKTALPG-----------LGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EEEeCCCcEEeeccc-chhhhhcCCC-----------CCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 999999999999943 43322 3333 68899999999999999876644 5777775
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.018 Score=53.63 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=87.5
Q ss_pred cceeEEEEccCCCeEEEEec-----------CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 325 QFAHSMIFSYDSSQLIIAGH-----------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
...+.....|+|.+.+.... -|.|+.+|. .+..++.+.. +-..-+.|+||||++.|+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-----------~~~~~NGla~SpDg~tly 178 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-----------DLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-----------cEEecCceEECCCCCEEE
Confidence 34567788889877665433 133444443 4555555544 445567899999999888
Q ss_pred EEec-CCeEEEEEcCC--c----eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCC-eEEEEEcCCCCcccchhcccCC
Q 007489 394 AVNC-FGDVYIFNLEI--Q----RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLGEWSMQHTFV 465 (601)
Q Consensus 394 s~~~-dg~i~iwd~~~--~----~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~~~~~ 465 (601)
.+.. .+.|+-|+++. + +..........+..-.++... ++.+.+++..+| .|.+|+.+ +++
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l---------- 246 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKL---------- 246 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcE----------
Confidence 7765 47888888762 1 111111112224566677777 777765555444 89999998 553
Q ss_pred cCcccccCCCcEEEEEeCCCCCCCEEEEEcCce
Q 007489 466 LPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 498 (601)
Q Consensus 466 ~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~ 498 (601)
...+.-....+++++|--. ..+.+++-+...
T Consensus 247 -~~~i~lP~~~~t~~~FgG~-~~~~L~iTs~~~ 277 (307)
T COG3386 247 -LGEIKLPVKRPTNPAFGGP-DLNTLYITSARS 277 (307)
T ss_pred -EEEEECCCCCCccceEeCC-CcCEEEEEecCC
Confidence 1222222256777777543 245666664443
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0015 Score=63.83 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=59.7
Q ss_pred EEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-Cc--EEEEEcC
Q 007489 280 CSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-RR--IYVVDVS 354 (601)
Q Consensus 280 ~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g~--i~vwd~~ 354 (601)
.-.|+|||+.|+.. ..|.-.||..+.. +... .......... ..-.++|||++|+..+.. |. |.+.|+.
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~---~riT~~~~~~--~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQV---TRLTFSGGGN--SNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCC--CCce---eEeeccCCCC--cCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 55689999998883 5566667766652 2221 1122222111 256799999999887753 44 6666666
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
++...+.+. .........|.|+++++...+.
T Consensus 359 ~~~~~~~lt------------~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 359 SGGKIRILT------------STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcEEEcc------------ccccCCCCCcCCCCceEEEecc
Confidence 555444444 3344455678888887765543
No 352
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.83 E-value=0.011 Score=52.56 Aligned_cols=204 Identities=13% Similarity=0.160 Sum_probs=124.5
Q ss_pred CCCeEEEEEcCCCCEEEE-EcCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEE
Q 007489 275 SRKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~-~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vw 351 (601)
..-...+.|..+|.++-+ |..| .++.+++.+ +..+ ....++... ---.++.. +++.....-.++...+|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~---~~~~l~~~~-FgEGit~~-~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVL---QSVPLPPRY-FGEGITIL-GDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEE---EEEE-TTT---EEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEE---EEEECCccc-cceeEEEE-CCEEEEEEecCCeEEEE
Confidence 344557778777877777 6444 567777665 3332 223333311 11233333 33444455668999999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC-C---CceeEEE
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE-G---ASVTAAG 427 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~l~ 427 (601)
|..+.+.+.+|.- ...=..++ .|++.|+.++....++++|.++.+....+.... + ..++-+.
T Consensus 116 d~~tl~~~~~~~y------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 116 DPNTLKKIGTFPY------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp ETTTTEEEEEEE-------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred ccccceEEEEEec------------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 9999999988874 34556677 488888888888899999998887766655432 2 3567788
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCC----cCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEe
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFV----LPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 503 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~ 503 (601)
|. +|...|=.-....|...|.++|+...|....... ....-..-.+-..+|+++|. .+++++-+..|-.++.
T Consensus 182 ~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~--~~~l~vTGK~Wp~lye 257 (264)
T PF05096_consen 182 YI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE--TDRLFVTGKLWPKLYE 257 (264)
T ss_dssp EE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT--TTEEEEEETT-SEEEE
T ss_pred EE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC--CCEEEEEeCCCCceEE
Confidence 87 5777777777888999999999887764221100 00000111356789999998 7899999988866665
Q ss_pred C
Q 007489 504 F 504 (601)
Q Consensus 504 ~ 504 (601)
+
T Consensus 258 V 258 (264)
T PF05096_consen 258 V 258 (264)
T ss_dssp E
T ss_pred E
Confidence 4
No 353
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.81 E-value=0.061 Score=55.94 Aligned_cols=362 Identities=12% Similarity=0.046 Sum_probs=177.6
Q ss_pred eEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhc-cccccceEEEEEeCC--C----CEEEEEeeCCeEEEEEecc
Q 007489 38 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAPS--H----NRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~s~~--~----~~l~s~~~dg~i~vw~~~~ 109 (601)
+.++..+.+.+. .++.++.++.+...++..+.+...- ..-...|.|+.++|- + ++++.|..+..+.+.-...
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 344444455555 8888888888888888766633222 124578999999984 2 2677787776665554332
Q ss_pred CcCCCCCCCCCccccceeEEecCcc--ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVR--AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
... ..+...+. .-...|.-..+- .| ..+|++
T Consensus 568 d~~--------------~~~~~~l~~~~iPRSIl~~~~e---------~d------------------------~~yLlv 600 (1096)
T KOG1897|consen 568 DLI--------------LITHEQLSGEIIPRSILLTTFE---------GD------------------------IHYLLV 600 (1096)
T ss_pred Ccc--------------eeeeeccCCCccchheeeEEee---------cc------------------------ceEEEE
Confidence 211 00000011 011222222322 22 249999
Q ss_pred ecCCCeEEEEeccc--cCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcc
Q 007489 188 AGDDTKLFAYCANE--FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 265 (601)
Q Consensus 188 ~~~d~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 265 (601)
+..||.+..+-+.. ...-............ ....+.......+++.+++-.-+|.-+..-
T Consensus 601 algdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~---~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL--------------- 662 (1096)
T KOG1897|consen 601 ALGDGALLYFVLDINTGQLSDRKKVTLGTQPI---SLRTFSSKSRTAVFALSDRPTVIYSSNGKL--------------- 662 (1096)
T ss_pred EcCCceEEEEEEEcccceEccccccccCCCCc---EEEEEeeCCceEEEEeCCCCEEEEecCCcE---------------
Confidence 99999887665443 2211111101011110 111111112223444444433333322100
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
....+..+.-..+....-..-...++++..+.+++..++. -+++ .+. +.+- ......+++.+....+++.+..
T Consensus 663 v~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~---iqkl-~ir--tvpl-~~~prrI~~q~~sl~~~v~s~r 735 (1096)
T KOG1897|consen 663 VYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDE---IQKL-HIR--TVPL-GESPRRICYQESSLTFGVLSNR 735 (1096)
T ss_pred EEeccchHHhhhhcccccccCCceEEEecCCceEEEEecc---hhhc-cee--eecC-CCChhheEecccceEEEEEecc
Confidence 0001111111112221111223677788888899988874 2221 122 2222 2244677777755555544431
Q ss_pred --------------CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEec----------CCe
Q 007489 346 --------------RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNC----------FGD 400 (601)
Q Consensus 346 --------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~----------dg~ 400 (601)
..++++|-++.+.+...+-.. ......|.++.|..| +.++++|.. .|+
T Consensus 736 ~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-------~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 736 IESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-------NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred cccchhhcCCcceEEEEEEecCCceeEEeeccccc-------cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 126666666555443222110 002234566668887 778887753 589
Q ss_pred EEEEEcCCceEEEEeecc-CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEE
Q 007489 401 VYIFNLEIQRQHWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIG 479 (601)
Q Consensus 401 i~iwd~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 479 (601)
|.||.....+....+... -.+.+.++.-- ++++||.- ...|++|++..++. ++.-..+..++..
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~e-----------Lr~e~~~~~~~~a 873 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTERE-----------LRIECNISNPIIA 873 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEec--CcEEEEEEccccce-----------ehhhhcccCCeEE
Confidence 999998874333232221 12355555433 56665544 56799999988742 2222345566666
Q ss_pred EEeCCCCCCCEEEEEc
Q 007489 480 LSFSPSPSSSSVIIYS 495 (601)
Q Consensus 480 i~~~p~~~~~~~~~~~ 495 (601)
+...-. ++.|.+.+
T Consensus 874 L~l~v~--gdeI~VgD 887 (1096)
T KOG1897|consen 874 LDLQVK--GDEIAVGD 887 (1096)
T ss_pred EEEEec--CcEEEEee
Confidence 666554 55666663
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00012 Score=70.91 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=78.5
Q ss_pred cceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCee-EEEEccCCCEEEEEecCCeEEE
Q 007489 325 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNCFGDVYI 403 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spd~~~las~~~dg~i~i 403 (601)
..+..+.|+|.-..+|++..+|.|.+..+. .+.+.++.- +...++ +++|.|||++||.|-.||+|++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----------p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----------PGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----------CCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 367889999999999999999999999988 788888885 455566 9999999999999999999999
Q ss_pred EEcCCceEEEEeeccCCCceeEEEecC
Q 007489 404 FNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 404 wd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
.|++++......+......|.++-|++
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEccCCCceeccccccccchheeeccc
Confidence 999998875443222335788888875
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.79 E-value=0.0034 Score=47.18 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=70.8
Q ss_pred eeEEEEcc---CC-CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 327 AHSMIFSY---DS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 327 v~~i~~s~---d~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
|+++++.. || +.|++|+.|..|++|+- .+.+.++.. ...|++++-... ..++.+-.+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e------------~~~v~~L~~~~~-~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE------------TDKVTSLCSLGG-GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec------------ccceEEEEEcCC-CEEEEEecCCEEE
Confidence 45555544 33 57999999999999984 366777763 567888877666 5688899999999
Q ss_pred EEEcCCceEEEEeeccCCCceeEEEecCCC---CCEEEEEeCCCeEE
Q 007489 403 IFNLEIQRQHWFISRLEGASVTAAGFPPQN---NNVLIITTSSNQVY 446 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~~l~~~~~dg~v~ 446 (601)
+|+- ....|.++.-+ .++++++...+ -.-|++|-.+|.|-
T Consensus 67 vY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9975 33444555433 57777766412 13688888888774
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00016 Score=70.08 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCcee-EEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
-...|..+.|+|.-.++|.+..+|.|.++.+. .+..++++. ++..++ +++|.| ||+.||+|-.||+|++-|++++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence 34568889999999999999999999999999 777778874 455666 999999 99999999999999999999886
Q ss_pred cccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 455 LGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.- ..........|..+.|++.
T Consensus 96 ~l----------~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 96 RL----------VSFLFSVETDISKGIWDRI 116 (665)
T ss_pred ce----------eccccccccchheeecccc
Confidence 31 1111123356777777643
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.017 Score=56.72 Aligned_cols=105 Identities=15% Similarity=0.314 Sum_probs=67.3
Q ss_pred EEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce
Q 007489 331 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 331 ~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~ 410 (601)
.++.+....+....++.+.+.+-...+. +. ..+++..|++||+|++||.-..+|.+.|.+.+-.+
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~------------~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID------------SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc------------CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 3444555555555556666444332211 11 34679999999999999999999999999877666
Q ss_pred EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 411 QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 411 ~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
....+.......+..|.|.- +. .++..- ...|.+......
T Consensus 250 ~~~e~~~~~~~~p~~~~WCG-~d-av~l~~-~~~l~lvg~~~~ 289 (410)
T PF04841_consen 250 KLCEFDTDSKSPPKQMAWCG-ND-AVVLSW-EDELLLVGPDGD 289 (410)
T ss_pred eeEEeecCcCCCCcEEEEEC-CC-cEEEEe-CCEEEEECCCCC
Confidence 65555443335778899986 43 333333 456777765443
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.69 E-value=0.045 Score=51.00 Aligned_cols=153 Identities=15% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCccEEEEeecCCCCc-ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 286 SGMLFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 286 ~g~~l~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
....|+++...++.+|......... .. .....++ ..+..++|. ++.++.|..++ ..+.|+.++.....+..
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~--~ke~~lp---~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~ 175 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKL--LKEISLP---DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDP 175 (275)
T ss_pred cceEEEEEECCEEEEEEEECCcccccce--eEEEEcC---CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCc
Confidence 3456666777799999998621111 11 2223333 467888888 55688777555 88999987766544432
Q ss_pred Ccccc-cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE-EEeeccCCCceeEEEecCCCCCEEEEEeCC
Q 007489 365 CREEH-DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 365 ~~~~~-~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
..... .........++..+.. +++.+|++- |..-...|..+.... ..+. .. ..+.++++.. .+|++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~-~~p~~~~~~~---pyli~~~~- 246 (275)
T PF00780_consen 176 SDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WS-SAPQSVAYSS---PYLIAFSS- 246 (275)
T ss_pred cCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEE-cC-CchhEEEEEC---CEEEEECC-
Confidence 11000 0000011233444444 345677653 333344455443222 1221 22 3567777754 57777666
Q ss_pred CeEEEEEcCCCCc
Q 007489 443 NQVYVFDVEAKQL 455 (601)
Q Consensus 443 g~v~vwd~~~~~~ 455 (601)
+.|.||++.++++
T Consensus 247 ~~iEV~~~~~~~l 259 (275)
T PF00780_consen 247 NSIEVRSLETGEL 259 (275)
T ss_pred CEEEEEECcCCcE
Confidence 4599999999985
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.69 E-value=3.8e-05 Score=74.30 Aligned_cols=160 Identities=11% Similarity=0.183 Sum_probs=102.6
Q ss_pred CCCeEEEEEcC-CCCEEEEE-----cCCccEEEEeecCC-CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc
Q 007489 275 SRKIICSTISN-SGMLFAYS-----DHVKPSLFELKKGK-VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 275 ~~~i~~~~~s~-~g~~l~~~-----~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
....++++|++ |.+.||.| .+..+.|||+...- .....|.+.. +......+++|-.+.+++.+|.....
T Consensus 102 ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~----~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 102 ARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS----STLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc----ccccCccccccccCcchhhcccccch
Confidence 46677888877 45677765 45678999998620 1111122221 13345568888888899999999999
Q ss_pred EEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEc-CCce-EEEEeecc---CC
Q 007489 348 IYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNL-EIQR-QHWFISRL---EG 420 (601)
Q Consensus 348 i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~-~~~~-~~~~~~~~---~~ 420 (601)
+.++|++.. .....+ .+..+..+..+| .+.|+++-. ||.|.+||. ..-+ +...+..- ..
T Consensus 178 ~~ifdlRqs~~~~~sv-------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~ 243 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSV-------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKP 243 (783)
T ss_pred hhhhhhhhhhhhhhhh-------------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcc
Confidence 999998632 111222 234567788888 778888776 999999994 2211 11111100 01
Q ss_pred CceeEEEecCCCCCEEEEEeCC-CeEEEEEcCC
Q 007489 421 ASVTAAGFPPQNNNVLIITTSS-NQVYVFDVEA 452 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~d-g~v~vwd~~~ 452 (601)
..+..++|.|.....|++...| ++|+.||+..
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2589999999555567776654 7999999863
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.067 Score=52.27 Aligned_cols=281 Identities=14% Similarity=0.123 Sum_probs=164.2
Q ss_pred EEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEE-cCCCcEEEeeCCccchhhhccccccceEEEEEeC
Q 007489 11 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 88 (601)
Q Consensus 11 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~-~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~ 88 (601)
+.+++..+......+.. +. ....+.+.+++ .+... .....+.+-+............-...-..+++++
T Consensus 13 ~~v~~~~~~~~~~~~~~--------~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~ 83 (381)
T COG3391 13 VSVINTGTNKVTAAISL--------GR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNP 83 (381)
T ss_pred eEEEeecccEEEEEeec--------CC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCC
Confidence 77777776666666652 11 45566777888 43332 2222555555542222222221114456788888
Q ss_pred CCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCC
Q 007489 89 SHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 167 (601)
Q Consensus 89 ~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~ 167 (601)
+++.++ +...++.|.+.|..+... .... .-......+++. ++++
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~-----------------~~~~-~vG~~P~~~~~~---------~~~~-------- 128 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTV-----------------LGSI-PVGLGPVGLAVD---------PDGK-------- 128 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccce-----------------eeEe-eeccCCceEEEC---------CCCC--------
Confidence 888555 444568999999666542 1111 112255666766 6765
Q ss_pred ccccccccccccCCCCEEEEecC---CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEe
Q 007489 168 KPIDFSYHKWAHLGVPMLISAGD---DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL 244 (601)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~s~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~ 244 (601)
.++.+.. ++.+.+.|..+..
T Consensus 129 ----------------~vYV~n~~~~~~~vsvid~~t~~----------------------------------------- 151 (381)
T COG3391 129 ----------------YVYVANAGNGNNTVSVIDAATNK----------------------------------------- 151 (381)
T ss_pred ----------------EEEEEecccCCceEEEEeCCCCe-----------------------------------------
Confidence 4444333 4566666655421
Q ss_pred eccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEee-ecCC
Q 007489 245 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINK-RQLP 321 (601)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~-~~~~ 321 (601)
.+...... ..+ ..++++|+|+.+... .++.+.+++... ..++. .. ....
T Consensus 152 ---------------------~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~----~~v~~-~~~~~~~ 203 (381)
T COG3391 152 ---------------------VTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG----NSVVR-GSVGSLV 203 (381)
T ss_pred ---------------------EEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC----cceec-ccccccc
Confidence 11221111 122 788999999977663 588888888653 33321 11 0011
Q ss_pred cCccceeEEEEccCCCeEEEEecC---CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-
Q 007489 322 RKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC- 397 (601)
Q Consensus 322 ~~~~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~- 397 (601)
.....-..+.++|+|+++.+.... +.+...|..++.....-.... .. ....+.++|+|+++.+...
T Consensus 204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~---------~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG---------SG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc---------cC-CCCceeECCCCCEEEEEecC
Confidence 112234678999999977666554 589999988877665522210 22 5667899999999988754
Q ss_pred CCeEEEEEcCCceEEEEeeccCC--CceeEEEecC
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPP 430 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p 430 (601)
.+.+.+.|..+............ ..+..+++.+
T Consensus 274 ~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 274 GGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 48899999988877655443321 2356666665
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.66 E-value=0.0068 Score=62.07 Aligned_cols=196 Identities=18% Similarity=0.206 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCEEEEEc-------CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc-
Q 007489 276 RKIICSTISNSGMLFAYSD-------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR- 347 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~-------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~- 347 (601)
..+.+.++||+|+.+++.. +..-.||-....... .. + ..+ .....-.|+|||+.|++......
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~--l----t~g--~~~t~PsWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ--V----LEG--HSLTRPSWSLDADAVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee--e----ecC--CCCCCceECCCCCceEEEecCcce
Confidence 4578899999999988732 444566655531111 11 1 112 12567789999988877754322
Q ss_pred EEEEEcCCCceeeeeccCcccccccCC-CCCCCeeEEEEccCCCEEEEEecCCeEEE---EEcCCceEEE----EeeccC
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQ-PSEPPITKMFTSSDGQWLAAVNCFGDVYI---FNLEIQRQHW----FISRLE 419 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spd~~~las~~~dg~i~i---wd~~~~~~~~----~~~~~~ 419 (601)
+++.+......+..+.... .+.. .....|..+.|||||..||... +|.|+| -....+.... .+...-
T Consensus 421 ~~v~~~~~~gql~~~~vd~----ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDA----SAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred EEEeccCCCceEEEEeccC----chhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 2232221111111111000 0000 1356799999999999988766 577877 4445554211 122112
Q ss_pred CCceeEEEecCCCCCEEEEEeCCCeEEEEE--cCCCCcccchhcccCCcCccccc--CCCcEEEEEeCCCCCCCEEEEEc
Q 007489 420 GASVTAAGFPPQNNNVLIITTSSNQVYVFD--VEAKQLGEWSMQHTFVLPRRYQE--FPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 420 ~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
+..+.++.|.. ++. |+++..++.-.+|. +...... .+.+ ....+..|+=+++ .+++-+
T Consensus 496 ~~~~~~l~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~------------~~~~~n~~~~v~~vaa~~~----~iyv~~ 557 (591)
T PRK13616 496 GDTAVSLDWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSD------------ALPSRNLSAPVVAVAASPS----TVYVTD 557 (591)
T ss_pred CCccccceEec-CCE-EEEEecCCCCceEEEecCCcccc------------ccCCCCccCceEEEecCCc----eEEEEc
Confidence 23468899998 776 45665555444554 4433211 1112 2356777776654 677777
Q ss_pred CceEEEEe
Q 007489 496 ARAMCVID 503 (601)
Q Consensus 496 ~~~~~~~~ 503 (601)
.+++....
T Consensus 558 ~~g~~~l~ 565 (591)
T PRK13616 558 ARAVLQLP 565 (591)
T ss_pred CCceEEec
Confidence 77766554
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.66 E-value=0.0092 Score=56.97 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=100.8
Q ss_pred eEEEEEecCCCCeEEEEE---cCC----CCEEEEEc----------C-CccEEEEeecCC-CCcceEEEeeecCCcCccc
Q 007489 266 LLVQVKSKASRKIICSTI---SNS----GMLFAYSD----------H-VKPSLFELKKGK-VGQGEWIINKRQLPRKLQF 326 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~---s~~----g~~l~~~~----------~-~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 326 (601)
.+.++.......+.+++. ..+ ..+|++|. . |.+.+|++.... ...++-.+.... ..++
T Consensus 14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~ 90 (321)
T PF03178_consen 14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE---VKGP 90 (321)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE---ESS-
T ss_pred EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe---ecCc
Confidence 455666666666665544 222 45666642 1 779999998621 112222222222 3457
Q ss_pred eeEEEEccCCCeEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 327 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
|++++-- ++ +|+++. ++.|.+|++...+ ....-... ....++++.. .+++|+.|+....|.++.
T Consensus 91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----------~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD----------SPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-----------BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec----------ceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 8888765 44 455444 5889999997766 33322211 2335666655 566999999988899886
Q ss_pred cCC--ceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 406 LEI--QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 406 ~~~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
.+. .+....-.......++++.|-+ +++.++++..+|.|.++.....
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCC
Confidence 553 2233222223345789999997 5579999999999999998743
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.58 E-value=0.025 Score=54.00 Aligned_cols=158 Identities=9% Similarity=0.058 Sum_probs=92.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc
Q 007489 274 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~ 353 (601)
..+.|++++-- ++ .|+++..+.+.+|++.. ...+... ..... ...+.++... ++++++|.....+.++..
T Consensus 87 ~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~---~~~l~~~--~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-RLVVAVGNKLYVYDLDN---SKTLLKK--AFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp ESS-EEEEEEE-TT-EEEEEETTEEEEEEEET---TSSEEEE--EEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred ecCcceEhhhh-CC-EEEEeecCEEEEEEccC---cccchhh--heecc-eEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 35778888765 34 47778789999999996 2223111 11112 2244555443 669999998888888855
Q ss_pred CC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC-------ce-EEEEeecc-CCCce
Q 007489 354 SS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-------QR-QHWFISRL-EGASV 423 (601)
Q Consensus 354 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~-------~~-~~~~~~~~-~~~~v 423 (601)
.. ...+..+.... ....++++.|-+|++.++.++.+|.+.++.... +. .......+ .+..|
T Consensus 157 ~~~~~~l~~va~d~---------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v 227 (321)
T PF03178_consen 157 DEENNKLILVARDY---------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV 227 (321)
T ss_dssp ETTTE-EEEEEEES---------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred EccCCEEEEEEecC---------CCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence 43 23233332211 355688999987778999999999999998762 11 22222222 34678
Q ss_pred eEE---EecCC--CCC-----EEEEEeCCCeEEEEEc
Q 007489 424 TAA---GFPPQ--NNN-----VLIITTSSNQVYVFDV 450 (601)
Q Consensus 424 ~~l---~~~p~--~~~-----~l~~~~~dg~v~vwd~ 450 (601)
+++ .+.|. +.. .++.++.+|.|.+.-.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 877 55551 122 4888889999885443
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.56 E-value=0.11 Score=51.87 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCEEEE-E-cC---CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec---CCcEE
Q 007489 278 IICSTISNSGMLFAY-S-DH---VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIY 349 (601)
Q Consensus 278 i~~~~~s~~g~~l~~-~-~~---~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---dg~i~ 349 (601)
...+..++|+++|+. + .. ..+.+.++.........|..-.....+ ....+... ++.+++.... .+.|.
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~---~~~~v~~~-~~~~yi~Tn~~a~~~~l~ 304 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG---VEYYVDHH-GDRLYILTNDDAPNGRLV 304 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS----EEEEEEE-TTEEEEEE-TT-TT-EEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc---eEEEEEcc-CCEEEEeeCCCCCCcEEE
Confidence 667888999999886 3 22 234444444310011222222111111 22223222 3334433332 35677
Q ss_pred EEEcCCCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE-ecCC--eEEEEEcCCceEEEEeeccCCCce
Q 007489 350 VVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV-NCFG--DVYIFNLEIQRQHWFISRLEGASV 423 (601)
Q Consensus 350 vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v 423 (601)
..++..... ...+.. +...+.-..++..+.+|+.. ..++ .|+++++..+.....++....+.|
T Consensus 305 ~~~l~~~~~~~~~~~l~~-----------~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v 373 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIP-----------EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSV 373 (414)
T ss_dssp EEETTSTSGGGEEEEEE-------------SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEE
T ss_pred EecccccccccceeEEcC-----------CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEE
Confidence 777765542 223333 44433333444455566544 3443 589999994444445554444556
Q ss_pred eEEEecCCCCCEEEEE-eC---CCeEEEEEcCCCCcccc
Q 007489 424 TAAGFPPQNNNVLIIT-TS---SNQVYVFDVEAKQLGEW 458 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~-~~---dg~v~vwd~~~~~~~~~ 458 (601)
..+...+ +++.+... +. -++++.||+.+++++.|
T Consensus 374 ~~~~~~~-~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 374 SGVSGDF-DSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEES-T-T-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred eccCCCC-CCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 7777666 55444333 32 36899999999987554
No 365
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.52 E-value=0.093 Score=50.08 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=37.1
Q ss_pred EEEEEEeeCCeEEEEcCCCcEEEeeCCccch---hh----hccccccceEEEEEeCC---CCEEEEE
Q 007489 40 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQ----AHSFHKGDVNALAAAPS---HNRVFST 96 (601)
Q Consensus 40 V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~---~~----~~~~h~~~V~~l~~s~~---~~~l~s~ 96 (601)
-++|+|.|||.++.+...|.|++++ ..+.. +. ...........++++|+ ..+|+..
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY 69 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEE
Confidence 5789999999666667799999999 33432 11 22334567899999994 3455433
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.51 E-value=0.0037 Score=46.96 Aligned_cols=88 Identities=27% Similarity=0.217 Sum_probs=66.3
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
|++||.|..||||+ ..+.+..++ ....|.+++-...++++.+-.+|+|-+|+-. +.+.+.+. ...+
T Consensus 18 LlvGs~D~~IRvf~--~~e~~~Ei~---------e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKS-K~~~ 83 (111)
T PF14783_consen 18 LLVGSDDFEIRVFK--GDEIVAEIT---------ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKS-KNQV 83 (111)
T ss_pred EEEecCCcEEEEEe--CCcEEEEEe---------cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeecc-CCCe
Confidence 78999999999998 467888886 5677999988888899999999999999763 23344443 3346
Q ss_pred EEEEEeC-C--C-CEEEEEeeCCeEE
Q 007489 82 NALAAAP-S--H-NRVFSTGSDGQVI 103 (601)
Q Consensus 82 ~~l~~s~-~--~-~~l~s~~~dg~i~ 103 (601)
.++++.. + | .-|++|-.+|.|-
T Consensus 84 ~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 84 TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 7776654 2 2 3688888888764
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.49 E-value=0.028 Score=55.37 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCEEEEEcCCccEEEEeecC------CCCcc-eEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 278 IICSTISNSGMLFAYSDHVKPSLFELKKG------KVGQG-EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~~~~~v~l~~~~~~------~~~~~-~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
|..+.|+++|++++...+..+.+++.+.. +.|.. .+... ......|.+.+|..| .++..+.. .++.
T Consensus 147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~----~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI----HEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE----EEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE----EEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 78999999999999977888999887652 00110 11111 111346777777655 44443433 5655
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
+-.|+. .++.. -..++.-+.+.|..+.+...+.|+.|..+.++.
T Consensus 220 --l~~Ge~-~~i~~-----------ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 220 --LVNGET-GIIAH-----------LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EETTEE-EEEEE------------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred --EEcCCc-ceEEE-----------cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 333332 22222 234577778888777888888888888887753
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.044 Score=51.08 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=66.3
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEcC--CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 269 QVKSKASRKIICSTISNSGMLFAYSDH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
++...+-...+.++||||++.+..++. +.+.-|++.. ..+..--...........+..-.++...+|.+.+++..+|
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~-~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP-ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc-ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 333333455678999999988777544 5565555542 0111000000011222233445667777887776555454
Q ss_pred -cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc-cCCCEEEEEe
Q 007489 347 -RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS-SDGQWLAAVN 396 (601)
Q Consensus 347 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd~~~las~~ 396 (601)
.|.+|+.. ++++..+.. ....+++++|- |+.+.|...+
T Consensus 235 ~~v~~~~pd-G~l~~~i~l-----------P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKL-----------PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ceEEEECCC-CcEEEEEEC-----------CCCCCccceEeCCCcCEEEEEe
Confidence 89999987 888888876 44667788874 4445554433
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00016 Score=43.39 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=33.4
Q ss_pred chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEE
Q 007489 69 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 69 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~ 106 (601)
+++..+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556678899999999999999999999999999995
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.064 Score=47.91 Aligned_cols=215 Identities=12% Similarity=0.114 Sum_probs=129.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 275 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
...+.+++|+|+.+.|.+-.+.--.+..+.. .|..+ ....+.+ ....-.|.+..+|++.++--.++.+.++.+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~--~Gdli---rtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK--EGDLI---RTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEec--CCceE---EEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4569999999999998886666666666665 34432 2333444 2233567888888888877778999998886
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEe--eccC-------CCceeE
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRLE-------GASVTA 425 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--~~~~-------~~~v~~ 425 (601)
....+..+... ....+...+.+...-.++|+|..+.|..+-.-.=+.||.+........+ ...+ -..|.+
T Consensus 159 ~~t~~~~~~~~-~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQ-KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccce-EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 55322222210 0000111112566788999999998888887777888877643311111 1111 135778
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCC---CcEEEEEeCCCCCCCEEEEEcCceEEEE
Q 007489 426 AGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP---GEVIGLSFSPSPSSSSVIIYSARAMCVI 502 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~~p~~~~~~~~~~~~~~~~~~ 502 (601)
+.|++..+.+|+.+.+++.+...|....-....+ +.+...+.. -...+|+..++ ++..++.-++..+.|
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls------L~~g~~gL~~dipqaEGiamDd~--g~lYIvSEPnlfy~F 309 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS------LTKGNHGLSSDIPQAEGIAMDDD--GNLYIVSEPNLFYRF 309 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCeeeeEE------eccCCCCCcccCCCcceeEECCC--CCEEEEecCCcceec
Confidence 8999867778888888899988888765321111 122222222 34567887776 333334455555555
Q ss_pred eC
Q 007489 503 DF 504 (601)
Q Consensus 503 ~~ 504 (601)
..
T Consensus 310 ~~ 311 (316)
T COG3204 310 TP 311 (316)
T ss_pred cc
Confidence 43
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0043 Score=64.42 Aligned_cols=101 Identities=11% Similarity=0.132 Sum_probs=72.2
Q ss_pred EeeecCCcEEEEECCCC-ceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 3 YSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
..|-++..+..||.+-. ..+..-. ...........|++-+.+|+||.|+.+|.||+||--.-+....|.+-..+|
T Consensus 546 flGls~n~lfriDpR~~~~k~v~~~----~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKLVDSQ----SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred EEEECCCceEEeccCCCCCceeecc----ccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 46777889999998742 2221111 011134456788888889999999999999999954333334566778999
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEec
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~ 108 (601)
.+|..+.||++|++.+ +..+.+++..
T Consensus 622 ~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 622 IGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eEEEecCCCcEEEEee-cceEEEEEEe
Confidence 9999999999998776 4567777753
No 372
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.40 E-value=0.00018 Score=69.87 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=73.4
Q ss_pred EEeeecCCcEEEEECCCCceE-EEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEc----CCCcEEEeeCCcc--chhh
Q 007489 2 LYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSAD----STGSVQFWDSRHG--TLLQ 72 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~----~dg~i~vwd~~~~--~~~~ 72 (601)
++.|..+|.|-+-.+....-- +... .+|....++++|++-. .||+|- .|..+.|||+.++ .+..
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke 145 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE 145 (783)
T ss_pred hhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc
Confidence 678899999999887543322 2222 1688889999999865 666662 4678999999876 2221
Q ss_pred --hccc-cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 73 --AHSF-HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 73 --~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
.+.+ -.....++||-.+.+.+.+|...+.++++|++..
T Consensus 146 ~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 146 SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 1222 3345668999988899999999999999999854
No 373
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.00054 Score=40.97 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=32.4
Q ss_pred CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEee
Q 007489 19 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWD 64 (601)
Q Consensus 19 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd 64 (601)
++.+..+. .|...|.++.|.+++ .+++++.|+.+++||
T Consensus 2 ~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK--------GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE--------ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556666 688899999999988 899999999999996
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.048 Score=53.26 Aligned_cols=196 Identities=13% Similarity=0.112 Sum_probs=125.9
Q ss_pred CeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec---CCcEEEE
Q 007489 277 KIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIYVV 351 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---dg~i~vw 351 (601)
....+++++.+..+.. ..++.+.+.+... .... . ....+. ....++++|+++.+.++.. ++.+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~~~~---~-~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---NTVL---G-SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcc---ccee---e-Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEE
Confidence 3457788888875554 4578899988654 1111 1 111111 3478899999988877776 6889999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceEEE-Eee--ccCCCceeEEE
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHW-FIS--RLEGASVTAAG 427 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~~~-~~~--~~~~~~v~~l~ 427 (601)
|-.+++...+... -..+ ..++++|+|+.++... .++.|.+.|..+..... ... ...+.....+.
T Consensus 146 d~~t~~~~~~~~v-----------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~ 213 (381)
T COG3391 146 DAATNKVTATIPV-----------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIA 213 (381)
T ss_pred eCCCCeEEEEEec-----------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEE
Confidence 9988888877443 2233 8999999999776655 78899999987776542 100 01124567889
Q ss_pred ecCCCCCEEEEEeCC---CeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--cCceEEEE
Q 007489 428 FPPQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVI 502 (601)
Q Consensus 428 ~~p~~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~ 502 (601)
++| ++..+.+.... +.+.+.|..++....+. ...+.. ....+.++|+ +..+++- ....+..+
T Consensus 214 v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~---------~~~~~~-~~~~v~~~p~--g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 214 VDP-DGNRVYVANDGSGSNNVLKIDTATGNVTATD---------LPVGSG-APRGVAVDPA--GKAAYVANSQGGTVSVI 280 (381)
T ss_pred ECC-CCCEEEEEeccCCCceEEEEeCCCceEEEec---------cccccC-CCCceeECCC--CCEEEEEecCCCeEEEE
Confidence 999 88877666544 58999999888754320 001111 4566788887 3333332 23455555
Q ss_pred eCCC
Q 007489 503 DFGR 506 (601)
Q Consensus 503 ~~~~ 506 (601)
|...
T Consensus 281 d~~~ 284 (381)
T COG3391 281 DGAT 284 (381)
T ss_pred eCCC
Confidence 5543
No 375
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.35 E-value=0.062 Score=52.19 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=50.4
Q ss_pred EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchh-------------------------------------------hhc
Q 007489 39 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL-------------------------------------------QAH 74 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~-------------------------------------------~~~ 74 (601)
.|.++.|.++. .|+.|...|.|.||.+...+.- ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999887 9999999999999976332110 001
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
....++|++++.| |=-+++.|..+|.+.|.|+++..
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa 118 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA 118 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe
Confidence 2235789999997 56689999999999999998765
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.07 Score=47.27 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCc-EEEeeCCccchhhhcccccc--ceEEEEEeCCCC
Q 007489 17 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGS-VQFWDSRHGTLLQAHSFHKG--DVNALAAAPSHN 91 (601)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~-i~vwd~~~~~~~~~~~~h~~--~V~~l~~s~~~~ 91 (601)
+.|+++..+..+. ++| .++|+|.- .++.+-.-|+ ..++|....+...++...++ ---.=+|||||.
T Consensus 56 eaGk~v~~~~lpa----R~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~ 126 (366)
T COG3490 56 EAGKIVFATALPA----RGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR 126 (366)
T ss_pred cCCceeeeeeccc----ccC-----CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc
Confidence 3577777776432 234 46777765 4555555554 56788887776655432111 111236999999
Q ss_pred EEEEEeeC-----CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 92 RVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 92 ~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
+|+..-.| |.|-|||.+.+-. .+..+..|.-.-..+.+. +||+
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~fq----------------rvgE~~t~GiGpHev~lm---------~DGr 174 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREGFQ----------------RVGEFSTHGIGPHEVTLM---------ADGR 174 (366)
T ss_pred EEEeecCCCCCCCceEEEEecccccc----------------eecccccCCcCcceeEEe---------cCCc
Confidence 99976433 7799999885432 356667776666667776 8886
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.02 Score=50.52 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=58.6
Q ss_pred EEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc-----CCCcEEEeeCCcc-chhhhccccccceEE
Q 007489 11 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-----STGSVQFWDSRHG-TLLQAHSFHKGDVNA 83 (601)
Q Consensus 11 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~-----~dg~i~vwd~~~~-~~~~~~~~h~~~V~~ 83 (601)
..++|....+.+.++....+....+|. .||||| .|...- ..|.|-|||...+ +.+..+..|.-....
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHe 166 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHE 166 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcce
Confidence 457788888887777755444444555 699999 444332 2378999999743 456678888888889
Q ss_pred EEEeCCCCEEEEEe
Q 007489 84 LAAAPSHNRVFSTG 97 (601)
Q Consensus 84 l~~s~~~~~l~s~~ 97 (601)
+.+.+||+.++.+.
T Consensus 167 v~lm~DGrtlvvan 180 (366)
T COG3490 167 VTLMADGRTLVVAN 180 (366)
T ss_pred eEEecCCcEEEEeC
Confidence 99999999998763
No 378
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.24 E-value=0.092 Score=45.10 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCEEEE--EcCCccEEEEeecCC----CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEE
Q 007489 278 IICSTISNSGMLFAY--SDHVKPSLFELKKGK----VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 278 i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vw 351 (601)
-+.++|+.+.+.+.. +.+.+|.-|+.+... +...++++.+.....+. .--.+++..+|.+.++.-..++|..+
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEE
Confidence 356788888776655 677778778855421 12344555443222211 11344556688888888888999999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEc
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 386 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 386 (601)
|..+|+.+.++.- ....|+++||-
T Consensus 239 dp~tGK~L~eikl-----------Pt~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGKILLEIKL-----------PTPQITSCCFG 262 (310)
T ss_pred CCCCCcEEEEEEc-----------CCCceEEEEec
Confidence 9999999999987 67889999994
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.21 E-value=0.21 Score=47.36 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=72.6
Q ss_pred ccceeEEEEccCCC-eEEEEec------CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 324 LQFAHSMIFSYDSS-QLIIAGH------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 324 ~~~v~~i~~s~d~~-~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
...+..+.|||... .|+.|.+ |..|.+.+.. +...+.+..+. ....+..=-|+|||..|..-+
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~---------~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRM---------EGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS------------TTEEEEEEEE-TTSS-EEEEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCC---------CCcccccccccCCCCEEEEEe
Confidence 34667888999554 4444443 2234444433 44334443321 234566678999999776432
Q ss_pred -----cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCC----------------eEEEEEcCCCCc
Q 007489 397 -----CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN----------------QVYVFDVEAKQL 455 (601)
Q Consensus 397 -----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg----------------~v~vwd~~~~~~ 455 (601)
.+..|.-+|+.+++...... .. ....+--++ |+++++-=+.|. -|++++++.+..
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~~~~-~p--~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRRLME-MP--WCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEEEEE-E---SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred ecCCCCceEEEeeCCCCCCceEEEe-CC--ceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 24467788888887654322 22 345666678 887554333332 567788887765
Q ss_pred ccchhcccCCcCcccccCCC-cEEEEEeCCCCCCCEEEEE----cCceEEEEeCC
Q 007489 456 GEWSMQHTFVLPRRYQEFPG-EVIGLSFSPSPSSSSVIIY----SARAMCVIDFG 505 (601)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~~~~~~----~~~~~~~~~~~ 505 (601)
....+... ....+.++.. .=..+.|+|| +..|++- +...++.+++.
T Consensus 333 ~~l~~h~~--sw~v~~~~~q~~hPhp~FSPD--gk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 333 RKLARHDT--SWKVLDGDRQVTHPHPSFSPD--GKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEEE---------BTTBSSTT----EE-TT--SSEEEEEE-TTSS-EEEEEE--
T ss_pred eeeeeccC--cceeecCCCccCCCCCccCCC--CCEEEEECCCCCCccEEEEeCc
Confidence 43322211 0111222221 1256799999 4444433 34556666553
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.99 E-value=0.18 Score=51.85 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEee-ecCCc-CccceeEEEEccCCCeEEEEecCCcEEEEEc
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK-RQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~ 353 (601)
..|..+.|||||..++.-.++.|.+--+...+.+..- +.. ..+.. ....+..+.|..++.++ ++..++...+|.+
T Consensus 448 g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~--l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 448 GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYA--LTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCcee--ecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 5699999999999999855677777555443334321 111 11222 22345889999999854 5555554445554
Q ss_pred CC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEE
Q 007489 354 SS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI 403 (601)
Q Consensus 354 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~i 403 (601)
.- |.....+.... ....+..++-+++ -|+..+.+|.+.+
T Consensus 525 ~vDG~~~~~~~~~n---------~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 525 NLDGSNSDALPSRN---------LSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ecCCccccccCCCC---------ccCceEEEecCCc--eEEEEcCCceEEe
Confidence 21 32222212211 3567888888764 4556677774443
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.85 E-value=0.004 Score=38.88 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.2
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
....|..++|+|...+||.++.+|.|.||.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45679999999999999999999999999983
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.17 Score=45.33 Aligned_cols=175 Identities=13% Similarity=0.216 Sum_probs=109.3
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
..+.+....+.++.|+|+.+.|++......-.|+=..+|++++++.-. .-...-.|.+.-+|++.++--.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----------g~~DpE~Ieyig~n~fvi~dER 148 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----------GFSDPETIEYIGGNQFVIVDER 148 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----------ccCChhHeEEecCCEEEEEehh
Confidence 334555566999999999999988887776666655779998887642 2233556888889999988888
Q ss_pred CCeEEEEEcCCceEEEE-------eecc-C-CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCc
Q 007489 398 FGDVYIFNLEIQRQHWF-------ISRL-E-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR 468 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~-------~~~~-~-~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 468 (601)
++.+.++.++....... +... + ....-.++|.| ....|.++=+-.-+.||.++... ...+..... .+.
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~-~~l~~~~~~-~~~ 225 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSP-SSLSVHASL-DPT 225 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCC-ccccccccc-Ccc
Confidence 99999998875533212 1111 1 24567899999 77788888777777777776432 111100000 000
Q ss_pred ccc-cCCCcEEEEEeCCCCCCCEEEEEcCc-eEEEEeCCC
Q 007489 469 RYQ-EFPGEVIGLSFSPSPSSSSVIIYSAR-AMCVIDFGR 506 (601)
Q Consensus 469 ~~~-~~~~~v~~i~~~p~~~~~~~~~~~~~-~~~~~~~~~ 506 (601)
... -.-..|.++.|++. ++..+++.+.+ .+..+|...
T Consensus 226 ~~~~~f~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAI-TNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cccceEeeccccceecCC-CCcEEEEecCCceEEEEecCC
Confidence 000 01145788899987 55555555433 344455543
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.0019 Score=54.94 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=69.8
Q ss_pred EEeeecCCcEEEEECCC-CceEEEEEeccCCCCCCCceEEEEE-EEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 2 LYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSL-LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~V~~v-~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
|+.|+.||.|.+|+..- |....... .-...|-++ .-..++ ...+++.+|.|+.|+..-++.+.....|.
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~--------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVC--------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhh--------cccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 68899999999999762 22222221 122233333 223344 67889999999999999888887777787
Q ss_pred -cceEEEEEeCCCCEEEEE--eeCCeEEEEEeccC
Q 007489 79 -GDVNALAAAPSHNRVFST--GSDGQVILYKASCE 110 (601)
Q Consensus 79 -~~V~~l~~s~~~~~l~s~--~~dg~i~vw~~~~~ 110 (601)
.++..+..+..+.++..+ |.|..++.|++...
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 666666676677777777 77888888877654
No 384
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.79 E-value=0.97 Score=48.15 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCceeeeeccCccccccc--CC-----CCCCCeeEEEEccCCCEEEE-EecCCeEEEEEcCCceEEEEee
Q 007489 345 DRRIYVVDVSSSELLHTFTPCREEHDRE--IQ-----PSEPPITKMFTSSDGQWLAA-VNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 345 dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~i~~l~~spd~~~las-~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
-|.|.-+|+.+++.+............. +. ....+...=...-.+.+++. |+.|+.++-+|.++++.++...
T Consensus 640 ~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~ 719 (764)
T TIGR03074 640 WGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR 719 (764)
T ss_pred cEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee
Confidence 3789999999998765554311000000 00 00011111112225566665 7899999999999999988876
Q ss_pred ccCCCceeEEEec-CCCCCEEEEE
Q 007489 417 RLEGASVTAAGFP-PQNNNVLIIT 439 (601)
Q Consensus 417 ~~~~~~v~~l~~~-p~~~~~l~~~ 439 (601)
...+..-.-+.+. .+..+|+++.
T Consensus 720 l~~~~~a~P~tY~~~~GkQYVvi~ 743 (764)
T TIGR03074 720 LPAGGQATPMTYMGKDGKQYVVIV 743 (764)
T ss_pred CCCCcccCCEEEEecCCEEEEEEE
Confidence 5433222334555 4134455544
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.051 Score=52.41 Aligned_cols=123 Identities=9% Similarity=0.051 Sum_probs=77.2
Q ss_pred eEEEEEecCCCCeEEEEEcCCCC--------EEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCC
Q 007489 266 LLVQVKSKASRKIICSTISNSGM--------LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS 337 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~--------~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~ 337 (601)
.+.+..... .|.-+.+.|+.+ .|+.-+++.|.-||.+........|.-. ..... .....|++-..+|
T Consensus 368 IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~-kqy~~-k~nFsc~aTT~sG- 442 (644)
T KOG2395|consen 368 IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS-KQYST-KNNFSCFATTESG- 442 (644)
T ss_pred eeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec-ccccc-ccccceeeecCCc-
Confidence 344444443 266666777643 3444477788888887532222222111 11111 2345677766666
Q ss_pred eEEEEecCCcEEEEEcCCCcee-eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 338 QLIIAGHDRRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 338 ~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
++|+|+.+|.|++||. .+..- ..|.+ ...+|..+..+.||++|++.+ +..+.+.++
T Consensus 443 ~IvvgS~~GdIRLYdr-i~~~AKTAlPg-----------LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDR-IGRRAKTALPG-----------LGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eEEEeecCCcEEeehh-hhhhhhhcccc-----------cCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 8999999999999997 44433 33444 788999999999999987665 445666665
No 386
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.11 Score=43.76 Aligned_cols=193 Identities=9% Similarity=0.059 Sum_probs=119.4
Q ss_pred CCCEEEE-E--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeE-EEEecCCcEEEEEcCCCceeee
Q 007489 286 SGMLFAY-S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL-IIAGHDRRIYVVDVSSSELLHT 361 (601)
Q Consensus 286 ~g~~l~~-~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l-~~~~~dg~i~vwd~~~~~~~~~ 361 (601)
+|.++.+ | ....|+.|++.. ++.+|...-..-......++.+ +.++ +..-.+|.-.++|..+.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~---gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT---GQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccC---ceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcc
Confidence 3455555 4 456789999986 6665432211000011122221 2333 3334578889999988888877
Q ss_pred eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee-ccCC---CceeEEEecCCCCCEEE
Q 007489 362 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS-RLEG---ASVTAAGFPPQNNNVLI 437 (601)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~-~~~~---~~v~~l~~~p~~~~~l~ 437 (601)
+. .++.=..++. |++-|..++...+++.-|.++......+. ...+ ..++-+.|- +|...|
T Consensus 127 ~~------------y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyA 190 (262)
T COG3823 127 FS------------YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYA 190 (262)
T ss_pred cc------------cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEE
Confidence 76 3455566665 77778877777778777776554332222 1233 345567777 687787
Q ss_pred EEeCCCeEEEEEcCCCCcccchhcccC-CcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 438 ITTSSNQVYVFDVEAKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 438 ~~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
-.-.+..|...+.++|+...|...... .....-..|.....+|++.|+ .+++++-+..|-.+|.+
T Consensus 191 NVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~--~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 191 NVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ--QDRFLITGKLWPLLFEV 256 (262)
T ss_pred eeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCc--CCeEEEecCcCceeEEE
Confidence 777788888889999998888654431 111122234566789999998 77888888877666554
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.041 Score=57.68 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=70.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+|.|++-|.|-..|... ..-.-.+ ...-.++|.+++|+.+| .++.|-.+|.|.+||...+..++.+..|..+
T Consensus 102 ivi~Ts~ghvl~~d~~~-nL~~~~~------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTG-NLGPLHQ------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred EEEEcCchhhhhhhhhc-ccchhhc------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 66777777777777643 2111111 11346789999999999 7888889999999999999999888877776
Q ss_pred eEEEEE---eCCCCEEEEEeeCCeEEEEEecc
Q 007489 81 VNALAA---APSHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 81 V~~l~~---s~~~~~l~s~~~dg~i~vw~~~~ 109 (601)
++.+-+ ..++..++++..-|. +|++.-
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 655543 445667888877776 666543
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.63 E-value=0.34 Score=46.44 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=50.6
Q ss_pred EeeecCCcEEEEECCC----CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEE--c----CCCcEEEeeCCccchh
Q 007489 3 YSGSSDGYIRSWDAKL----GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA--D----STGSVQFWDSRHGTLL 71 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~--~----~dg~i~vwd~~~~~~~ 71 (601)
+-|-..+.|.|.|+.+ -+..+.+....- ..+.--..-..+-..|+| .++|+ + .-|-+.+.|-++.+..
T Consensus 92 ~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev-~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~ 170 (461)
T PF05694_consen 92 LPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEV-FEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVK 170 (461)
T ss_dssp EEBTTT--EEEEE--S-TTS-EEEEEE-HHHH-HHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EE
T ss_pred eeeeccCcEEEEECCCCCCCCceEeeeCHHHH-HhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccc
Confidence 3444678899999873 344455541100 000011222334445788 66664 2 2356888888877766
Q ss_pred hhcccc---ccceEEEEEeCCCCEEEEEe--------------------eCCeEEEEEeccCcC
Q 007489 72 QAHSFH---KGDVNALAAAPSHNRVFSTG--------------------SDGQVILYKASCESI 112 (601)
Q Consensus 72 ~~~~~h---~~~V~~l~~s~~~~~l~s~~--------------------~dg~i~vw~~~~~~~ 112 (601)
...... ..--...-|.|..+.++|.. .-.++.+||+.+.+.
T Consensus 171 g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 171 GRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp EE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred ceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 655532 22345677788888888774 346799999998774
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.61 E-value=0.61 Score=43.39 Aligned_cols=194 Identities=11% Similarity=0.133 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcce--EEEeee----cCCcCccceeEEE--EccCC-CeEEEEecCCcE
Q 007489 278 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE--WIINKR----QLPRKLQFAHSMI--FSYDS-SQLIIAGHDRRI 348 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~~i~--~s~d~-~~l~~~~~dg~i 348 (601)
|..+...++-+.+++-.|+.++++++..-...... ....+. ........+..++ -...+ .+|+++. ..+|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEE
Confidence 77888888877777756699999998762211100 000000 0111122344444 11233 3455444 5588
Q ss_pred EEEEcCCC-----ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC----
Q 007489 349 YVVDVSSS-----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE---- 419 (601)
Q Consensus 349 ~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~---- 419 (601)
.+|..... +..+.+. ....+..++|. ++.|+.|..++ ..+.|+.++.....+....
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~------------lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~ 181 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS------------LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSS 181 (275)
T ss_pred EEEEEECCcccccceeEEEE------------cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcch
Confidence 88887542 3455555 45778999997 66888887665 8899999776654332111
Q ss_pred -------CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEE
Q 007489 420 -------GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVI 492 (601)
Q Consensus 420 -------~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~ 492 (601)
..++..+... ++.+|++- |..-...|..+... . .....-...+.++++... .++
T Consensus 182 ~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~-r----------~~~i~W~~~p~~~~~~~p----yli 242 (275)
T PF00780_consen 182 FKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPS-R----------KSTIQWSSAPQSVAYSSP----YLI 242 (275)
T ss_pred hhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcC-c----------ccEEEcCCchhEEEEECC----EEE
Confidence 1233333433 45666543 33333445443221 1 001112345667777544 777
Q ss_pred EEcCceEEEEeCCC
Q 007489 493 IYSARAMCVIDFGR 506 (601)
Q Consensus 493 ~~~~~~~~~~~~~~ 506 (601)
....+.+.+.++..
T Consensus 243 ~~~~~~iEV~~~~~ 256 (275)
T PF00780_consen 243 AFSSNSIEVRSLET 256 (275)
T ss_pred EECCCEEEEEECcC
Confidence 88888888888765
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.59 E-value=0.62 Score=43.26 Aligned_cols=155 Identities=16% Similarity=0.057 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
..+..+..++||++++++..|.+.+-- +.+...|...... ....|.+|.|+|++.+.+++ ..|.|++=+...
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~----~~G~~~w~~~~r~---~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSW----DPGQTTWQPHNRN---SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-----TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEe----cCCCccceEEccC---ccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 668888889999999998888765321 2355667665443 24589999999998776644 788888776211
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC--CCceeEEEecCCCC
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNN 433 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~~p~~~ 433 (601)
...++..+.. ........+..++|.+++...|+|+. | ..+...+.++.-...+... ......+.|.+ +
T Consensus 217 --~~~~w~~~~~----~~~~~~~~~ld~a~~~~~~~wa~gg~-G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~- 286 (302)
T PF14870_consen 217 --DGETWSEPII----PIKTNGYGILDLAYRPPNEIWAVGGS-G-TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P- 286 (302)
T ss_dssp --EEEEE---B-----TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEE-T-
T ss_pred --CccccccccC----CcccCceeeEEEEecCCCCEEEEeCC-c-cEEEeCCCCccceECccccCCCCceEEEEEcC-C-
Confidence 1122221000 00003345899999999888876654 4 3456777777654444322 24688899986 4
Q ss_pred CEEEEEeCCCeEEEE
Q 007489 434 NVLIITTSSNQVYVF 448 (601)
Q Consensus 434 ~~l~~~~~dg~v~vw 448 (601)
+.-.+.+.+|.|.-|
T Consensus 287 ~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVLGQDGVLLRY 301 (302)
T ss_dssp TEEEEE-STTEEEEE
T ss_pred CceEEECCCcEEEEe
Confidence 456667778877655
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.011 Score=50.51 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=60.1
Q ss_pred CCeEEEEecCCcEEEEEcCC-CceeeeeccCcccccccCCCCCCCe-eEEEEccCCCEEEEEecCCeEEEEEcCCceEEE
Q 007489 336 SSQLIIAGHDRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPI-TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW 413 (601)
Q Consensus 336 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~ 413 (601)
+..+++|+.+|.|++|+... +.....+.. -...| +.+.--.++.+..++..||.|+.|++.-.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-----------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-----------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG 138 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc-----------ccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence 56789999999999998752 222111111 11222 223333456688899999999999998887764
Q ss_pred EeeccCC-CceeEEEecCCCCCEEEEE--eCCCeEEEEEcCC
Q 007489 414 FISRLEG-ASVTAAGFPPQNNNVLIIT--TSSNQVYVFDVEA 452 (601)
Q Consensus 414 ~~~~~~~-~~v~~l~~~p~~~~~l~~~--~~dg~v~vwd~~~ 452 (601)
.... |+ .++..+..+. .+++|+.+ +.|..++.|+++.
T Consensus 139 ~~g~-h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 139 YVGQ-HNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eecc-ccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 4432 33 3333333333 44444444 4455555555443
No 392
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.56 E-value=0.081 Score=53.63 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCeeEEEEccCCCEEEEEecCC-----eEEEEEcCCceEEE-EeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 378 PPITKMFTSSDGQWLAAVNCFG-----DVYIFNLEIQRQHW-FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg-----~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+.-..+.|-|.|..+|+-..|| .|..+...+.+.-. .+.......+..++|+- ....++++ ..+.|.+|-..
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEEcc
Confidence 3344589999999999877555 35556544322110 01111224566778876 55544444 45679999876
Q ss_pred CCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 452 AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
+-. |--.. .. .-..+.-+.|+|. +.+.+++-+...|-+++++.
T Consensus 325 Nyh---WYLK~------e~--~ip~~s~vkwhpe-~~nTl~f~d~~~I~~V~f~~ 367 (1243)
T COG5290 325 NYH---WYLKV------ER--QIPGISYVKWHPE-EKNTLLFRDGERILRVFFSE 367 (1243)
T ss_pred ceE---EEEEE------ee--cCCCcceeeeccc-cCcEEEEecCCeEEEEEeeh
Confidence 543 31111 11 1134677899999 89999999999999988875
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.45 E-value=0.012 Score=36.83 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=28.6
Q ss_pred CceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
..|..++|+| ..++||.++.+|.|.+|.+..
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEECCC
Confidence 5799999999 999999999999999999943
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.44 E-value=0.3 Score=44.52 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=86.5
Q ss_pred ceeEEEEccCCCeEEEEe--c-CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 326 FAHSMIFSYDSSQLIIAG--H-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~--~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
.+.+.++++|++.+|... . ...++++.. +.....+. ....++...|++++...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~------------~g~~l~~PS~d~~g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL------------TGGSLTRPSWDPDGWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec------------cCCccccccccCCCCEEEEEcCCCceE
Confidence 678899999999887766 2 334555543 33222221 123678889999988777777677677
Q ss_pred EEE-cCCceEE-EEeeccCCC-ceeEEEecCCCCCEEEEEe---CCCeEEEEEcCCCCcc-cchhcccCCcCcccccCCC
Q 007489 403 IFN-LEIQRQH-WFISRLEGA-SVTAAGFPPQNNNVLIITT---SSNQVYVFDVEAKQLG-EWSMQHTFVLPRRYQEFPG 475 (601)
Q Consensus 403 iwd-~~~~~~~-~~~~~~~~~-~v~~l~~~p~~~~~l~~~~---~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 475 (601)
++. ...+... ..+...... .|+++.+|| ||..++... .++.|+|=-+....-. ...... ..........
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~---~~~~~~~~~~ 166 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG---PRRVAPPLLS 166 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc---ceEecccccC
Confidence 774 3333222 122222112 899999999 999888776 3578888887654322 110000 0111112246
Q ss_pred cEEEEEeCCC
Q 007489 476 EVIGLSFSPS 485 (601)
Q Consensus 476 ~v~~i~~~p~ 485 (601)
.+.++.|.++
T Consensus 167 ~v~~v~W~~~ 176 (253)
T PF10647_consen 167 DVTDVAWSDD 176 (253)
T ss_pred cceeeeecCC
Confidence 7899999987
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.02 Score=59.88 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=73.1
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~ 414 (601)
.+..+++|+..|.+...|... .+..-..+.. ..++|++++|+.||+.++.|-.+|.|.+||...++....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~---------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTG-NLGPLHQNER---------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhc-ccchhhcCCc---------cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 455789999999999988753 2221111111 578999999999999999999999999999999887766
Q ss_pred eeccCCCcee---EEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 415 ISRLEGASVT---AAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 415 ~~~~~~~~v~---~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+.. ++.+.+ .+.+.. ++..++++..-|. +|.+.
T Consensus 168 i~e-~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 168 ITE-HGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eee-cCCccceEEEEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 553 343433 344444 5556777777776 56553
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.24 E-value=0.86 Score=47.05 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=39.3
Q ss_pred CCCeEEEEecCCc-----EEEEEcCCCceeee--eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC-----eEE
Q 007489 335 DSSQLIIAGHDRR-----IYVVDVSSSELLHT--FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-----DVY 402 (601)
Q Consensus 335 d~~~l~~~~~dg~-----i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg-----~i~ 402 (601)
++.+.++|+.|+. |..||..+.+-... +.. ....+....+ +++..++|+.|| +|.
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-----------~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve 541 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-----------PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVE 541 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-----------ccccccEEEE--CCEEEEEecccCccccceeE
Confidence 6777888887763 77788765543222 221 2233333344 777778888776 477
Q ss_pred EEEcCCceEE
Q 007489 403 IFNLEIQRQH 412 (601)
Q Consensus 403 iwd~~~~~~~ 412 (601)
.||..+.+..
T Consensus 542 ~ydp~~d~W~ 551 (571)
T KOG4441|consen 542 CYDPETDTWT 551 (571)
T ss_pred EcCCCCCcee
Confidence 7777666553
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.13 E-value=0.43 Score=48.76 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=72.4
Q ss_pred ccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc--cCCCEEEEEecCCeE
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS--SDGQWLAAVNCFGDV 401 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pd~~~las~~~dg~i 401 (601)
.....-+.-|.-++.-++-+....+.|||...+.+...-.-. ..+.|..+.|. |||+.+.+.+..+.|
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~----------~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS----------EDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec----------CCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 334455555554544444444567999999877643222210 47789999885 689999999999999
Q ss_pred EEEEcC-----C----ceEEEE--eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 402 YIFNLE-----I----QRQHWF--ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 402 ~iwd~~-----~----~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
.+|.-. . ....+. +..+...+|.+..|.+ +|.++ +|+ .++++|+|-.
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEE-EEe-CCEEEEECCC
Confidence 998631 1 111111 2222336899999998 77544 433 5679998743
No 398
>PHA02713 hypothetical protein; Provisional
Probab=95.97 E-value=0.84 Score=47.21 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCCeEEEEecCC------cEEEEEcCC-Cc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC--eEEE
Q 007489 335 DSSQLIIAGHDR------RIYVVDVSS-SE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG--DVYI 403 (601)
Q Consensus 335 d~~~l~~~~~dg------~i~vwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg--~i~i 403 (601)
+++..++|+.++ .+..||..+ .+ .+..+.. .......+++ +|+..++|+.+| .+..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-----------~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-----------RLSALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-----------ccccceeEEE--CCEEEEEeeecceeehhh
Confidence 566777776542 367788765 33 3333332 2223333444 888899999888 7888
Q ss_pred EEcCCceEE
Q 007489 404 FNLEIQRQH 412 (601)
Q Consensus 404 wd~~~~~~~ 412 (601)
||..+.+..
T Consensus 530 yd~~~~~W~ 538 (557)
T PHA02713 530 FNVYTYEWN 538 (557)
T ss_pred cCccccccc
Confidence 888887764
No 399
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=2.1 Score=43.88 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=34.9
Q ss_pred ccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
...+..+..||+.++|+.-...|.|.+-+.+..+.+..+..
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 45788899999999999999999999999887777666664
No 400
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.77 E-value=1.3 Score=39.36 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=132.2
Q ss_pred eccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEE
Q 007489 223 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 302 (601)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~ 302 (601)
..++..+||.+-.+..+.-.+=.++...+ .+.+...+.......+.+-|||..-++-....|.-++
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tG--------------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d 130 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATG--------------EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD 130 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCC--------------ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEec
Confidence 35556677766665554444444443332 2344445555666778888988766662222333333
Q ss_pred eecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeE
Q 007489 303 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 382 (601)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 382 (601)
-.+ .+...|.+. ............|.+.|.+-+++.. |.---.|-. ...+.+|... .......
T Consensus 131 pkt--~evt~f~lp---~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaP----------qG~gpyG 193 (353)
T COG4257 131 PKT--LEVTRFPLP---LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAP----------QGGGPYG 193 (353)
T ss_pred Ccc--cceEEeecc---cccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccC----------CCCCCcc
Confidence 322 222222222 1222345678889999988888763 221112211 1234444432 3345678
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCC--CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchh
Q 007489 383 MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSM 460 (601)
Q Consensus 383 l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 460 (601)
|+..|||..-++.-.+..|-..|..++... .++.... ..-..+.-+| -+..-++....+.++.||.....-.+|
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~ey-- 269 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEY-- 269 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcc-eecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceee--
Confidence 899999998887767777877777666332 3332221 2334444566 777777777788999999887653333
Q ss_pred cccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--cCceEEEEeCCC
Q 007489 461 QHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDFGR 506 (601)
Q Consensus 461 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~~~~~ 506 (601)
.+.+.+-...++..+. ..++|+. +.+.|.+||-..
T Consensus 270 --------pLPgs~arpys~rVD~---~grVW~sea~agai~rfdpet 306 (353)
T COG4257 270 --------PLPGSKARPYSMRVDR---HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred --------eCCCCCCCcceeeecc---CCcEEeeccccCceeecCccc
Confidence 1223333445555543 3577774 566666666543
No 401
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.75 E-value=2.4 Score=42.20 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCC-ceEEEEEEEeeCC-eEE-EEcCC----CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCC------
Q 007489 34 SGP-ELCIWSLLSLRCG-TLV-SADST----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG------ 100 (601)
Q Consensus 34 ~~h-~~~V~~v~~s~~g-~l~-s~~~d----g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg------ 100 (601)
.++ ...+....+|||| ++| +.+.. ..|++.|+.+|+.+...-. ...-..++|.+|++.|+....+.
T Consensus 119 ~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 119 KDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp TTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred ccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCccccccc
Confidence 344 3455578899999 655 32333 4599999999976643211 11223499999988877554332
Q ss_pred -----eEEEEEeccCc
Q 007489 101 -----QVILYKASCES 111 (601)
Q Consensus 101 -----~i~vw~~~~~~ 111 (601)
.|..|++.+..
T Consensus 198 ~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp CGCCEEEEEEETTS-G
T ss_pred CCCCcEEEEEECCCCh
Confidence 36666666543
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.72 E-value=0.58 Score=45.58 Aligned_cols=153 Identities=11% Similarity=0.116 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCEEEEEc------------CC-ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 276 RKIICSTISNSGMLFAYSD------------HV-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~------------~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
.....++|.++|+++++.. .+ .|.+++-...+.....+ ..+.......+.+++.+++ |+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEEe
Confidence 5678899999999888742 11 44444332211111111 1122223345788999988 4444
Q ss_pred ecCCcEEEE-EcCC-C----ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-------------------
Q 007489 343 GHDRRIYVV-DVSS-S----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------------------- 397 (601)
Q Consensus 343 ~~dg~i~vw-d~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~------------------- 397 (601)
+.. .|..| |... + +....+..... ....+......++|.|||.+.++-+.
T Consensus 88 ~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~----~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 88 TPP-DILFLRDKDGDDKADGEREVLLSGFGG----QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred CCC-eEEEEeCCCCCCCCCCccEEEEEccCC----CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence 444 35444 4421 1 11111111000 00002345778999999987664441
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCC
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
.|.|.-++.++++.. .+... ......++|+| +++++++-..+
T Consensus 163 ~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 163 GGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred CceEEEEecCCCeEE-EEecC-cCCCccceECC-CCCEEEEccCC
Confidence 145666667666543 22221 24567899999 88877664433
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.31 Score=47.31 Aligned_cols=144 Identities=8% Similarity=0.184 Sum_probs=93.8
Q ss_pred cCCCeE-EEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE-------EEEEecCCeEEEEE
Q 007489 334 YDSSQL-IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW-------LAAVNCFGDVYIFN 405 (601)
Q Consensus 334 ~d~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~-------las~~~dg~i~iwd 405 (601)
.+.++| ..+.....++-.|++.|+.+.+..- +. .|+-+.+.|+.+. -+.|-.|..|.-||
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-----------~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKF-----------ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeec-----------cC-CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 344444 4455556799999999999998886 33 3788888887652 23456677898898
Q ss_pred cCCceE-EEEeeccC----CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEE
Q 007489 406 LEIQRQ-HWFISRLE----GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL 480 (601)
Q Consensus 406 ~~~~~~-~~~~~~~~----~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 480 (601)
..-... .......| +....|.+-.. ..++|+|+.+|.|++||-..... ...+.+...+|..|
T Consensus 411 pRv~~~~kl~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~A-----------KTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRRA-----------KTALPGLGDAIKHV 477 (644)
T ss_pred ccccCcceeeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhhh-----------hhcccccCCceeeE
Confidence 753221 11111111 13345555443 55899999999999999743321 12355677899999
Q ss_pred EeCCCCCCCEEEEEcCceEEEEeC
Q 007489 481 SFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 481 ~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
..+.+ +..|+.-..+.+.+++.
T Consensus 478 dvtad--GKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 478 DVTAD--GKWILATCKTYLLLIDT 499 (644)
T ss_pred Eeecc--CcEEEEecccEEEEEEE
Confidence 99988 55666666777777765
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.21 Score=53.12 Aligned_cols=158 Identities=12% Similarity=0.024 Sum_probs=96.2
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEE-E--cCCccEEEEeecCCCCc----ceEEEeeecCCcCccceeEEEEccCCC-eE
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAY-S--DHVKPSLFELKKGKVGQ----GEWIINKRQLPRKLQFAHSMIFSYDSS-QL 339 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~-~--~~~~v~l~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~s~d~~-~l 339 (601)
..+.......+..+...+|+...++ . .+..|..||+..-.... ..+ ..............++.|.|.=. ..
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl-~~s~ts~ek~vf~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPL-KNSATSFEKPVFQLKNVWNPLVPLNS 171 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccc-ccccchhccccccccccccCCccchh
Confidence 3445555677778888888877666 2 33467888886411111 000 00011112223445677777432 35
Q ss_pred EEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc--eEEEEee
Q 007489 340 IIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWFIS 416 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~--~~~~~~~ 416 (601)
+++..|+.|++..+.... .+..+. .....++++|||.|+.++.|..+|++.-|-.... ..+...+
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~p------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp 239 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSFP------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP 239 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcccC------------cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC
Confidence 667788989888764322 223333 5677999999999999999999999988865433 2211222
Q ss_pred ccCCCceeEEEecCCCCCEEEEE
Q 007489 417 RLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 417 ~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
......|.+++|-. ...+|++-
T Consensus 240 ~~e~yrvl~v~Wl~-t~eflvvy 261 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLS-TQEFLVVY 261 (1405)
T ss_pred cCCCcceeEEEEec-ceeEEEEe
Confidence 22335799999987 66666654
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.54 E-value=1.9 Score=39.41 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=47.0
Q ss_pred CeEEEEEcCCCCEEEE-E---cCCccEEEEeecCCCC-cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc
Q 007489 277 KIICSTISNSGMLFAY-S---DHVKPSLFELKKGKVG-QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~-~---~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
.|..+.+||||..+|. . .++.+.+--+.....+ .................+..++|.+++.+++.+...+.
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 7999999999988877 3 3677887777664444 22211111222233567899999999988777665443
No 406
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.53 E-value=2.4 Score=40.52 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=96.5
Q ss_pred CCeEEEEEc-CCCCEEEEEcCCc------cEEEEeecCCCCcceEE-EeeecCCcCcc--------ceeEEEEccCCCeE
Q 007489 276 RKIICSTIS-NSGMLFAYSDHVK------PSLFELKKGKVGQGEWI-INKRQLPRKLQ--------FAHSMIFSYDSSQL 339 (601)
Q Consensus 276 ~~i~~~~~s-~~g~~l~~~~~~~------v~l~~~~~~~~~~~~~~-~~~~~~~~~~~--------~v~~i~~s~d~~~l 339 (601)
+.+..+.+. .+++++++++++. +..+++........-.. .....+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 567888888 4667777788777 55555554111111111 11111111111 33477887788777
Q ss_pred EEEecC------CcEEEEEcCCCceeeeeccCcccccc----cCCCCCCCeeEEEEccCCCEEEEEec-----CC-----
Q 007489 340 IIAGHD------RRIYVVDVSSSELLHTFTPCREEHDR----EIQPSEPPITKMFTSSDGQWLAAVNC-----FG----- 399 (601)
Q Consensus 340 ~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~l~~spd~~~las~~~-----dg----- 399 (601)
++.-.+ ..|+.++.. |+.+..+..+...... .....+...-+|+++|||+.|+++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 766556 678888866 7776666332211000 12235677899999999996655432 22
Q ss_pred ----eEEEE--EcCC-c--eEEEEeecc------CCCceeEEEecCCCCCEEEEEeC-----CCeEEEEEcC
Q 007489 400 ----DVYIF--NLEI-Q--RQHWFISRL------EGASVTAAGFPPQNNNVLIITTS-----SNQVYVFDVE 451 (601)
Q Consensus 400 ----~i~iw--d~~~-~--~~~~~~~~~------~~~~v~~l~~~p~~~~~l~~~~~-----dg~v~vwd~~ 451 (601)
.++|+ |..+ + .....++.. ....|+.+.+-+ ++++|+.--. ...++||-+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEE
Confidence 14554 4443 2 111122221 236789999999 8887765422 3455666554
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.51 E-value=2.8 Score=43.34 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=57.2
Q ss_pred EEeeecC------CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCC------CcEEEeeCCccc
Q 007489 2 LYSGSSD------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRHGT 69 (601)
Q Consensus 2 l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~d------g~i~vwd~~~~~ 69 (601)
++.||.+ .++..||..+++-...-.. .+...-.++++..+-.+++|+.| .++..||..+++
T Consensus 288 ~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 288 VAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred EEECCCCCCCcccceeEEecCCcCcEeecCCC-------CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 4556666 3688888887743322221 23333455555544478888888 357788887665
Q ss_pred hh--hhccccccceEEEEEeCCCCEEEEEeeCCe-----EEEEEeccCc
Q 007489 70 LL--QAHSFHKGDVNALAAAPSHNRVFSTGSDGQ-----VILYKASCES 111 (601)
Q Consensus 70 ~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~-----i~vw~~~~~~ 111 (601)
-. ..+.......-... -+|...+.||.||. |-.||..+.+
T Consensus 361 W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCc
Confidence 22 22332222221111 26788889998865 5666666643
No 408
>PHA02713 hypothetical protein; Provisional
Probab=95.48 E-value=1.8 Score=44.73 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCEEEEEecC------CeEEEEEcCC-ceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCCC--eEEEEEcCCCCc
Q 007489 388 DGQWLAAVNCF------GDVYIFNLEI-QRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSN--QVYVFDVEAKQL 455 (601)
Q Consensus 388 d~~~las~~~d------g~i~iwd~~~-~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~dg--~v~vwd~~~~~~ 455 (601)
+++..+.|+.+ ..+..||.++ .+.. .++.+.. .....++.. ++.+.++|+.|+ .+..||+.+.+-
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCee-EccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 67777777654 2467899887 4543 2222221 112223333 678889999888 788888888763
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.45 E-value=0.66 Score=45.97 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=76.9
Q ss_pred cCccceeEEEEccCC----CeEEEEecCCcEEEEEcC-----CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE
Q 007489 322 RKLQFAHSMIFSYDS----SQLIIAGHDRRIYVVDVS-----SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 392 (601)
Q Consensus 322 ~~~~~v~~i~~s~d~----~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l 392 (601)
+....|..+.|.|-+ ..|++......|.||.+. ..+.+..-..... +...---..+.|+|....|
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~------e~~pvLpQGCVWHPk~~iL 127 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR------EPFPVLPQGCVWHPKKAIL 127 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc------CCcccCCCcccccCCCceE
Confidence 445678999999853 234455667889999984 2222222111000 0011123468899999999
Q ss_pred EEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEE-eCCCeEEEEEcCCCCc
Q 007489 393 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSNQVYVFDVEAKQL 455 (601)
Q Consensus 393 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~-~~dg~v~vwd~~~~~~ 455 (601)
+.-.....=.++++..........--..+.|.+.+|.+ ||+.|+++ +..=.-+|||=..+.+
T Consensus 128 ~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 128 TVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhh
Confidence 87776665556666544332222212236899999999 88887766 4444678888766554
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.43 E-value=0.87 Score=45.18 Aligned_cols=120 Identities=11% Similarity=0.130 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCC-----CEEEEEcCCccEEEEeecCCCCcceEEEee-ecCCcCcc-ceeEEEEccCCCeEEEEecCCc
Q 007489 275 SRKIICSTISNSG-----MLFAYSDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQ-FAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 275 ~~~i~~~~~s~~g-----~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
-..|..++|.|-+ .+||+-....|.+|.+.....+...|-+.. -++....+ --..+.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3678999999853 578888889999999985332222222221 11111110 1145679999988888776665
Q ss_pred EEEEEcCC--CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CCeEEEEEc
Q 007489 348 IYVVDVSS--SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNL 406 (601)
Q Consensus 348 i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg~i~iwd~ 406 (601)
-.++++.. .+....+. ..+.|.|.+|.+||+.|+.+-. .=.-+|||-
T Consensus 136 SV~~sV~~d~srVkaDi~------------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIK------------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEeeeeeeCCceEEEecc------------CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 45666532 23333343 5788999999999998876533 334678874
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.16 E-value=1.1 Score=46.38 Aligned_cols=165 Identities=8% Similarity=0.078 Sum_probs=94.5
Q ss_pred CCEEEEEcCCccEEEEeecCCCCcc---eEEEeee-c---C-------CcCccceeEEEEcc--CCCeEEEEecCCcEEE
Q 007489 287 GMLFAYSDHVKPSLFELKKGKVGQG---EWIINKR-Q---L-------PRKLQFAHSMIFSY--DSSQLIIAGHDRRIYV 350 (601)
Q Consensus 287 g~~l~~~~~~~v~l~~~~~~~~~~~---~~~~~~~-~---~-------~~~~~~v~~i~~s~--d~~~l~~~~~dg~i~v 350 (601)
..++.++..+.|.||+++....... .+.+... . . ......|+.|.... +...|+.|..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6778888899999999875222110 0111000 0 0 00112355554443 4457899999999999
Q ss_pred EEcCCCc-eeeeeccC-------cccccccCCCCCCCeeEEEEc--cCCCEEEEEecCCeEEEEEcCCceEEEE-eec-c
Q 007489 351 VDVSSSE-LLHTFTPC-------REEHDREIQPSEPPITKMFTS--SDGQWLAAVNCFGDVYIFNLEIQRQHWF-ISR-L 418 (601)
Q Consensus 351 wd~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~i~~l~~s--pd~~~las~~~dg~i~iwd~~~~~~~~~-~~~-~ 418 (601)
|.+++-- .+...... ......-.......+++++++ ...++||+++....|.||-......... .+. .
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 9763210 00000000 000000001134578999998 8888999999989898887654321111 111 1
Q ss_pred CCCceeEEEecCCC--CC---EEEEEeCCCeEEEEEcC
Q 007489 419 EGASVTAAGFPPQN--NN---VLIITTSSNQVYVFDVE 451 (601)
Q Consensus 419 ~~~~v~~l~~~p~~--~~---~l~~~~~dg~v~vwd~~ 451 (601)
+...|-+++|-+.+ +. .|++++-.|.+.+|++.
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 33578899998722 22 78888899999999883
No 412
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.77 Score=43.86 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=75.6
Q ss_pred CccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeee--ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe
Q 007489 323 KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF--TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 400 (601)
Q Consensus 323 ~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~ 400 (601)
..++|.+|.||+|.+.||+--.+.+|.+++....+....+ .... ....|...+|+.+ .-+|.....|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~---------k~~~IlGF~W~~s-~e~A~i~~~G- 133 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT---------KNANILGFCWTSS-TEIAFITDQG- 133 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc---------CcceeEEEEEecC-eeEEEEecCC-
Confidence 3558999999999999999999999999998433322111 1110 3456999999877 5566666666
Q ss_pred EEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe--CCCeEEEEEcCCC
Q 007489 401 VYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT--SSNQVYVFDVEAK 453 (601)
Q Consensus 401 i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~--~dg~v~vwd~~~~ 453 (601)
+.+|-....+....+-.-+...|.-..|.+ +-+.++.++ ..+.+.=+-+.++
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeeccccccccccEEEeec
Confidence 778876554432222233456788888888 655544333 2333333444433
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.1 Score=48.04 Aligned_cols=101 Identities=10% Similarity=-0.020 Sum_probs=65.8
Q ss_pred eEEEEEcCCC--CEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 278 IICSTISNSG--MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 278 i~~~~~s~~g--~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
..++.|.|.- ..+++..|..|++..+.. .... + .. -......++++|+|.|+.+++|...|++.-|...
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~---~~~~--v--~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~- 228 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ---LAQN--V--TS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS- 228 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhh---hhhh--h--cc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-
Confidence 4455666643 334446788888877653 1110 1 11 1223467999999999999999999999988743
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
++....+...... ....|.+|+|-....+|++
T Consensus 229 leik~~ip~Pp~~-------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 LEIKSEIPEPPVE-------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeecccCCCcC-------CCcceeEEEEecceeEEEE
Confidence 5655555543210 2478999999877777764
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.02 E-value=3.6 Score=39.77 Aligned_cols=214 Identities=12% Similarity=0.142 Sum_probs=98.4
Q ss_pred CCCEEEE-E-cCCccEEEEeecCCCCcceEEEeee-cCCc--CccceeEEEEccCCCeEEEEec------CCcEEEEEcC
Q 007489 286 SGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKR-QLPR--KLQFAHSMIFSYDSSQLIIAGH------DRRIYVVDVS 354 (601)
Q Consensus 286 ~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~v~~i~~s~d~~~l~~~~~------dg~i~vwd~~ 354 (601)
+.++|+. + ..+.|+++|..+......+.++... ++.. ....-..+..-|+|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 3467777 5 7788999998863333333222111 1111 1122234444578988877533 2458888988
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec--------------------CCeEEEEEcCCceEEEE
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--------------------FGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~--------------------dg~i~iwd~~~~~~~~~ 414 (601)
+.+.......... ....-..+-|.|..+.++|... ..++++||+.+.+...+
T Consensus 166 tf~v~g~We~~~~--------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 166 TFEVKGRWEKDRG--------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp T--EEEE--SB-T--------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cccccceeccCCC--------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 7777776654221 2334456778888888877542 35899999999999888
Q ss_pred eeccCC-CceeEEEecCC-CCCEEEEE-eCCCeEEEEEc-CCCCcccchhccc----------CCcC---cccccCCCcE
Q 007489 415 ISRLEG-ASVTAAGFPPQ-NNNVLIIT-TSSNQVYVFDV-EAKQLGEWSMQHT----------FVLP---RRYQEFPGEV 477 (601)
Q Consensus 415 ~~~~~~-~~v~~l~~~p~-~~~~l~~~-~~dg~v~vwd~-~~~~~~~~~~~~~----------~~~~---~~~~~~~~~v 477 (601)
+..... ..+..+.|..+ +..+=+++ .-..+|..|-- +.+ .|....- ..+| +.+..-..-|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g---~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG---EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT---EEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC---CeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 765432 34556666540 33343333 33445555543 333 2433221 1122 2233335678
Q ss_pred EEEEeCCCCCCCEEEE--EcCceEEEEeCCCCCCCCc
Q 007489 478 IGLSFSPSPSSSSVII--YSARAMCVIDFGRPVDPDD 512 (601)
Q Consensus 478 ~~i~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 512 (601)
++|..|.| +..+++ |....+..+|++.|..+..
T Consensus 315 tDI~iSlD--DrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 315 TDILISLD--DRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp --EEE-TT--S-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EeEEEccC--CCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 99999998 666664 4788899999999876554
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.02 E-value=3.8 Score=40.02 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=40.8
Q ss_pred eEEEEEEEeeC-----------C-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeC
Q 007489 38 LCIWSLLSLRC-----------G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 88 (601)
Q Consensus 38 ~~V~~v~~s~~-----------g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~ 88 (601)
..|+++.+.|= . .++.|..+|.|+++... |.++..-.-|..+|..|.+..
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~-G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTEN-GVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEecc-chHHHHHhcCccceEEEEecc
Confidence 57887777652 4 68899999999999974 888877778999999998854
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.02 E-value=1.9 Score=42.09 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=57.1
Q ss_pred cceeEEEEccCCCeEEEEe-----------cCC-cEEEEEcCC--Cce--eeeeccCcccccccCCCCCCCeeEEEEccC
Q 007489 325 QFAHSMIFSYDSSQLIIAG-----------HDR-RIYVVDVSS--SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSD 388 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 388 (601)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...|.. .-...+.+++.++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----------~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----------ELSMVTGLAVAVG 82 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----------CCCCccceeEecC
Confidence 3457889999998776643 223 677776432 332 233332 2334688999999
Q ss_pred CCEEEEEecCCeEEEEEcCCc-----eEEEEeeccC------CCceeEEEecCCCCCEEEEEe
Q 007489 389 GQWLAAVNCFGDVYIFNLEIQ-----RQHWFISRLE------GASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 389 ~~~las~~~dg~i~iwd~~~~-----~~~~~~~~~~------~~~v~~l~~~p~~~~~l~~~~ 440 (601)
| +++ ++.....++.+.+.. +....+..+. ...+..+.|.| |+.+.++.+
T Consensus 83 G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G 142 (367)
T TIGR02604 83 G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG 142 (367)
T ss_pred C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence 8 444 444432333354321 2222222221 13477899999 887666555
No 417
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=3 Score=37.65 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=120.4
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc-CCccE
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD-HVKPS 299 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~v~ 299 (601)
.+..+.++.+-.+++-.+.-++|.++..++... ++..+... ....++.. .|++..++. +.-.-
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~------------~~~~lnt~--gyaygv~v--sGn~aYVadlddgfL 151 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPT------------LIGFLNTD--GYAYGVYV--SGNYAYVADLDDGFL 151 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcc------------eeccccCC--ceEEEEEe--cCCEEEEeeccCcEE
Confidence 445666777888888888999999998776443 33333332 33344443 467777753 66677
Q ss_pred EEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCC
Q 007489 300 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 379 (601)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (601)
++|+... ....+ . ............++.| |++-..+..|+-+.+.|+..... -.|.++.+ ....
T Consensus 152 ivdvsdp--ssP~l-a--grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s-Pvli~~~n--------~g~g 215 (370)
T COG5276 152 IVDVSDP--SSPQL-A--GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS-PVLIGSYN--------TGPG 215 (370)
T ss_pred EEECCCC--CCcee-e--eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC-CeEEEEEe--------cCCc
Confidence 8888752 22211 1 1122222223566665 67777788899999999865431 22222211 3336
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE-EecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA-GFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+.++..|++..|++.. +--+.+-|..+.+..+.+.......+.++ .|.- .+++...+..+.-+.+-|+++.
T Consensus 216 ~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 216 TYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceec-ccceeeeeccccCceeEeccCC
Confidence 7888887776666654 33488888888876666665555444444 2222 4677777877777888888764
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.61 E-value=3.9 Score=38.13 Aligned_cols=172 Identities=14% Similarity=0.187 Sum_probs=83.7
Q ss_pred EEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC--Cce
Q 007489 281 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS--SEL 358 (601)
Q Consensus 281 ~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~--~~~ 358 (601)
+....++..++++..+ .||.... +-.-|+.... .....+..+..++||++++++.......-||--. .++
T Consensus 109 i~~l~~~~~~l~~~~G--~iy~T~D---gG~tW~~~~~---~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~ 180 (302)
T PF14870_consen 109 ITALGDGSAELAGDRG--AIYRTTD---GGKTWQAVVS---ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP 180 (302)
T ss_dssp EEEEETTEEEEEETT----EEEESS---TTSSEEEEE----S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE
T ss_pred EEEcCCCcEEEEcCCC--cEEEeCC---CCCCeeEccc---CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE
Confidence 3333344444444443 3555543 4445764432 3345788889999999998876655556777432 112
Q ss_pred eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE---eec-cCCCceeEEEecCCCCC
Q 007489 359 LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF---ISR-LEGASVTAAGFPPQNNN 434 (601)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~---~~~-~~~~~v~~l~~~p~~~~ 434 (601)
... . ....|..|.|+|++.+.+.+ ..|.|+.=+.......+. .+. ..+-.+..++|.+ ++.
T Consensus 181 ~~r--~-----------~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~ 245 (302)
T PF14870_consen 181 HNR--N-----------SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNE 245 (302)
T ss_dssp EE---------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-
T ss_pred Ecc--C-----------ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCC
Confidence 111 1 45789999999998876654 888888877222211111 111 1224588999998 776
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 435 VLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
..++++ .|.+ +...+.++ .|.+... ...-......|.|.++
T Consensus 246 ~wa~gg-~G~l-~~S~DgGk--tW~~~~~------~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 246 IWAVGG-SGTL-LVSTDGGK--TWQKDRV------GENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEEES-TT-E-EEESSTTS--S-EE-GG------GTTSSS---EEEEEET
T ss_pred EEEEeC-CccE-EEeCCCCc--cceECcc------ccCCCCceEEEEEcCC
Confidence 666554 5544 55666665 3543321 1122345777887654
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.58 E-value=2.7 Score=36.28 Aligned_cols=149 Identities=14% Similarity=0.189 Sum_probs=83.5
Q ss_pred CeEEEEecCCcEEEEEcC--CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC---C---eEEEE---E
Q 007489 337 SQLIIAGHDRRIYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---G---DVYIF---N 405 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g---~i~iw---d 405 (601)
..|+.+.....|.+|++. ..+++.+|. .-+.|..+.++..|+||++--.+ . .+++| +
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~------------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS------------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc------------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 455555677889999987 345677777 45789999999999999985322 2 56665 2
Q ss_pred cC--CceE---------------------EEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcc
Q 007489 406 LE--IQRQ---------------------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQH 462 (601)
Q Consensus 406 ~~--~~~~---------------------~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 462 (601)
.. ..++ ...+.-.-..++.+++..|.+|+ |++|+ ++.+.+|.+...... -.+..
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~-~~~~~ 173 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQ-SEKFS 173 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEe-ccccc
Confidence 11 1111 11111111346788888885666 44444 567999988765431 00001
Q ss_pred cCCcCccc-ccCC-CcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 463 TFVLPRRY-QEFP-GEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 463 ~~~~~~~~-~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
...+.+.+ .-|. ..+..++|..+ .+.+-+..-..++.+
T Consensus 174 ~lDFe~~l~~~~~~~~p~~v~ic~~----yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 174 FLDFERSLIDHIDNFKPTQVAICEG----YIAVMSDLEVLVLKL 213 (215)
T ss_pred EEechhhhhheecCceEEEEEEEee----EEEEecCCEEEEEEE
Confidence 11111111 1122 33566666544 555555555555544
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.54 E-value=1.6 Score=44.81 Aligned_cols=123 Identities=8% Similarity=0.051 Sum_probs=78.1
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC-CCCCEEEEEeCCCeEEEEEcCCCC--
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP-QNNNVLIITTSSNQVYVFDVEAKQ-- 454 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~~~~~dg~v~vwd~~~~~-- 454 (601)
..++.+.-|.-++.-++-+....+.|||...+.....-.-.....|.+++|.. .+++.+++.|-.+.|.+|.-....
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34555666665655555555667999999988754332212246899999874 278889999999999999653221
Q ss_pred --cccchhcccCCcCcccccCC-CcEEEEEeCCCCCCCEEEEEcCceEEEEeCCCC
Q 007489 455 --LGEWSMQHTFVLPRRYQEFP-GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRP 507 (601)
Q Consensus 455 --~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~ 507 (601)
...|...... .+..|. .+|.+..|.++ +.+++...+.+++++...+
T Consensus 110 ~~~p~w~~i~~i----~i~~~T~h~Igds~Wl~~---G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 110 NKGPSWAPIRKI----DISSHTPHPIGDSIWLKD---GTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred cCCcccceeEEE----EeecCCCCCccceeEecC---CeEEEEeCCEEEEECCCcC
Confidence 1223222111 122333 57888999877 5677777788887776554
No 421
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.44 E-value=4.3 Score=37.98 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=82.9
Q ss_pred ceeEEEEccCCCeEEEEe------------------cCCcEEEEEcCCCceeeeeccCccccccc---------------
Q 007489 326 FAHSMIFSYDSSQLIIAG------------------HDRRIYVVDVSSSELLHTFTPCREEHDRE--------------- 372 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------- 372 (601)
....+.+.++|..|++.- .|+.+.-.|+++++.+.............
T Consensus 58 d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~ 137 (299)
T PF14269_consen 58 DHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSS 137 (299)
T ss_pred CccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCC
Confidence 355666777777766321 24557777888888887765432211100
Q ss_pred -CCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCC----ceeEEEecCCCCCEEEEEeCCCeEEE
Q 007489 373 -IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA----SVTAAGFPPQNNNVLIITTSSNQVYV 447 (601)
Q Consensus 373 -~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~l~~~p~~~~~l~~~~~dg~v~v 447 (601)
....--.|++|...++|.+|+|...-..|.+.|-.+++..+.+....++ .-...+|-. +.+++-.+..++.|.+
T Consensus 138 ~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 138 SFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISL 216 (299)
T ss_pred CCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEE
Confidence 0112234788888899999999999999999999999999988654221 112245555 6666666678899999
Q ss_pred EEcC
Q 007489 448 FDVE 451 (601)
Q Consensus 448 wd~~ 451 (601)
||=.
T Consensus 217 FDN~ 220 (299)
T PF14269_consen 217 FDNA 220 (299)
T ss_pred EcCC
Confidence 9864
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=4.9 Score=41.37 Aligned_cols=169 Identities=16% Similarity=0.159 Sum_probs=89.8
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
+.++...+ ..+..+.|+.+..+|++..+|++++|++.. ..+ +....-.....+.|..+.|..+| +++-..+|
T Consensus 76 L~~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g----e~i-e~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g 147 (829)
T KOG2280|consen 76 LGRILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLLG----EFI-ESNSVGFESQMSDIVECRFFHNG--VAVLTVSG 147 (829)
T ss_pred hHHHHhcC-CCeeeecccCCceEEEEeccceEEEeecch----hhh-cccccccccccCceeEEEEecCc--eEEEecCC
Confidence 33343343 378899999999999999999999999974 111 00001112223456666666666 55556667
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CC--EEEEEe-cCCeEEEEEcCCceEE-EEeeccCCC
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQ--WLAAVN-CFGDVYIFNLEIQRQH-WFISRLEGA 421 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~--~las~~-~dg~i~iwd~~~~~~~-~~~~~~~~~ 421 (601)
.+.+-+-.....++++..... ....-+|-..-++ .+ .|+-.. ..+ ..++..+..... ..+...+ +
T Consensus 148 ~v~~i~~~~~~~~~~~~diP~--------~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~-~ 217 (829)
T KOG2280|consen 148 QVILINGVEEPKLRKMPDIPY--------NELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN-S 217 (829)
T ss_pred cEEEEcCCCcchhhhCCCCCC--------ccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC-c
Confidence 766654322223333332110 1111122222222 11 111111 111 122222222211 0111122 5
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
.+..+..|| +.++|+.-..+|.|.+-+++-.+
T Consensus 218 ~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 218 SVVKISVSP-NRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred eEEEEEEcC-CcceEEEEecCCcEEEEecchhh
Confidence 788999999 99999999999999998887665
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=1.3 Score=42.50 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=84.3
Q ss_pred eeEEEEccCCCeEEEEecCCcEEEEEcCCC--ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEE
Q 007489 327 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iw 404 (601)
.+.+-|. |.+..+.+...|.+.=|-+... ...-.|... ..++|.++.||+|.+.||.-..+.+|.++
T Consensus 25 sngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~----------d~G~I~SIkFSlDnkilAVQR~~~~v~f~ 93 (657)
T KOG2377|consen 25 SNGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMD----------DKGEIKSIKFSLDNKILAVQRTSKTVDFC 93 (657)
T ss_pred ccceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeec----------CCCceeEEEeccCcceEEEEecCceEEEE
Confidence 3445554 4444444455566666665322 222333322 46799999999999999999999999999
Q ss_pred EcCCceEEEEee---ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEE
Q 007489 405 NLEIQRQHWFIS---RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLS 481 (601)
Q Consensus 405 d~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 481 (601)
+....+...... ......|....|+. +.-+|.....| +-+|-+...+. -.+..+.|.-.|.-..
T Consensus 94 nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~pekr----------slRlVks~~~nvnWy~ 160 (657)
T KOG2377|consen 94 NFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVLPEKR----------SLRLVKSHNLNVNWYM 160 (657)
T ss_pred ecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEchhhh----------hhhhhhhcccCccEEE
Confidence 985443321111 11224588999996 45677777666 66776654321 1334556677788888
Q ss_pred eCCC
Q 007489 482 FSPS 485 (601)
Q Consensus 482 ~~p~ 485 (601)
|.++
T Consensus 161 yc~e 164 (657)
T KOG2377|consen 161 YCPE 164 (657)
T ss_pred Eccc
Confidence 8887
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.18 E-value=9.6 Score=40.92 Aligned_cols=111 Identities=14% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCceeeeeccCccccc-----ccCCC-CCCCe-eEEEEccCCCEEEEEe------------------cCC
Q 007489 345 DRRIYVVDVSSSELLHTFTPCREEHD-----REIQP-SEPPI-TKMFTSSDGQWLAAVN------------------CFG 399 (601)
Q Consensus 345 dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~i-~~l~~spd~~~las~~------------------~dg 399 (601)
+|.|+-+|..+|+++-.+........ .+.-. ....+ ..+++.|...+++.+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 68899999999999888764211110 00000 01111 2345555544443321 235
Q ss_pred eEEEEEcCCceEEEEeeccCC--------CceeEEEecCCCCC---EEEEEeCCCeEEEEEcCCCCc
Q 007489 400 DVYIFNLEIQRQHWFISRLEG--------ASVTAAGFPPQNNN---VLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~--------~~v~~l~~~p~~~~---~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.|.-.|.++++..+.++..|. ....-+.+...+++ .++.++.+|.++++|-+++++
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 677788899999988876442 11222223210342 788999999999999998874
No 425
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.12 E-value=2.2 Score=33.64 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=68.3
Q ss_pred EEccCCCeEEEEecCCcEEEEEcCCCc--------eeeeeccCcccccccCCCCCCCeeEEEEcc-----CCCEEEEEec
Q 007489 331 IFSYDSSQLIIAGHDRRIYVVDVSSSE--------LLHTFTPCREEHDREIQPSEPPITKMFTSS-----DGQWLAAVNC 397 (601)
Q Consensus 331 ~~s~d~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-----d~~~las~~~ 397 (601)
.|......|++++.-|+|.|++..... .+..+. -...|++|+-.+ +...|+.|+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN------------in~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN------------INQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE------------CCCceEEEEEEecCCCCCcCEEEEecc
Confidence 444455568888889999999865322 333343 456788887655 3456777765
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecC--CCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP--QNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
. .+..||++....... +..+ ..|.++.+-. ....-|+..+.+..|.-||.+..+
T Consensus 73 t-~llaYDV~~N~d~Fy-ke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 73 T-SLLAYDVENNSDLFY-KEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred c-eEEEEEcccCchhhh-hhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 5 599999987765422 1222 4577766632 022346666667778888877655
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.98 E-value=0.33 Score=29.36 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=25.9
Q ss_pred CeeEEEEccCC---CEEEEEecCCeEEEEEcCC
Q 007489 379 PITKMFTSSDG---QWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 379 ~i~~l~~spd~---~~las~~~dg~i~iwd~~~ 408 (601)
.+.++.|||+. .+|+.+-..|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999854 5999999999999999984
No 427
>PRK10115 protease 2; Provisional
Probab=93.94 E-value=2.5 Score=44.95 Aligned_cols=111 Identities=10% Similarity=0.104 Sum_probs=68.3
Q ss_pred ceeEEEEccCCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC--
Q 007489 326 FAHSMIFSYDSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-- 398 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-- 398 (601)
.+..+.+|||+++|+.+... -.|++.|+.+++.+...-. .. -..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----------~~--~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----------NV--EPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----------Cc--ceEEEEeeCCCEEEEEEecCC
Confidence 56778899999998876543 3588899887764322111 11 1459999999877655432
Q ss_pred ----CeEEEEEcCCc--eEEEEeeccCCCcee-EEEecCCCCCEEEEEeC---CCeEEEEEcC
Q 007489 399 ----GDVYIFNLEIQ--RQHWFISRLEGASVT-AAGFPPQNNNVLIITTS---SNQVYVFDVE 451 (601)
Q Consensus 399 ----g~i~iwd~~~~--~~~~~~~~~~~~~v~-~l~~~p~~~~~l~~~~~---dg~v~vwd~~ 451 (601)
..|+.+++.++ +....+..... ... .+..+. ++++++..+. ++.+.+++..
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~-~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDD-TFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCC-CEEEEEEEcC-CCCEEEEEEECCccccEEEEECc
Confidence 36888888887 33333332222 222 333444 7777665543 4578888853
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.94 E-value=0.0038 Score=59.16 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=77.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhcc--c-
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS--F- 76 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~--~- 76 (601)
|+.++.+-.+..|| +.|+....+. -++..-.++|..+| .++.+-..+.+.+||+.+.. .+.+. +
T Consensus 49 lavaca~tiv~~YD-~agq~~le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~ 117 (615)
T KOG2247|consen 49 LAVACANTIVIYYD-KAGQVILELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGT 117 (615)
T ss_pred eehhhhhhHHHhhh-hhcceecccC---------CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCc
Confidence 45556666666666 3355544443 44556677888777 45667778999999997532 23332 1
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc-cccceeEEEee
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVA 146 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~ 146 (601)
|.... +.|++.+..++.+-..+.+.+++..+.+. ....+ |...+.++++.
T Consensus 118 ~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~------------------iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 118 SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR------------------IIVMGKHQRRGTQIAVT 168 (615)
T ss_pred chHHH--HhhccCCccccccccccceEEEeccchhh------------------hhhhcccccceeEEEec
Confidence 33333 78999889999998999999999887663 23344 88889999987
No 429
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.75 E-value=2.5 Score=40.52 Aligned_cols=160 Identities=10% Similarity=0.121 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCC-CcceEEEeeecCCc-Ccccee-EEEEccCCCeEEEEecCCcEEEE-
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKV-GQGEWIINKRQLPR-KLQFAH-SMIFSYDSSQLIIAGHDRRIYVV- 351 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~-~i~~s~d~~~l~~~~~dg~i~vw- 351 (601)
..+..+-..|||+++.+-+..++.++++....- ..++. ...++ ....|+ .+..-..|.-+.+++.||-|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~----~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLV----DDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhh----hcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 456677789999999996668899999875211 11110 00011 001122 11122345567788889988777
Q ss_pred EcCC-Cc----eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 352 DVSS-SE----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 352 d~~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
|... +. .++.++- ...++..+.-..+.+-+++-+.+|++.++.....+....-+.. ..+..+
T Consensus 297 dvr~~~~p~l~h~R~f~l-----------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~--~~~~~~ 363 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKL-----------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY--QAPQLV 363 (733)
T ss_pred eeecCCCCcceeeecccc-----------CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh--cCccee
Confidence 4422 22 1222221 2344444444445566778888899888876655543222222 367788
Q ss_pred EecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 427 GFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
++|| .+.+|++-. .|.++++.+++..
T Consensus 364 ~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSP-NQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eeCc-ccchheeec-CCceEEEEecCCC
Confidence 9999 888887654 5679999998865
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=93.70 E-value=6.8 Score=37.53 Aligned_cols=156 Identities=13% Similarity=-0.012 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
..+.++.+.|++.+++++..|.+.. .. +.+...|.... ......++.+.+.++++.++++ ..|.+++=..+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~--s~--~~gg~tW~~~~---~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYS--TW--EPGQTAWTPHQ---RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEE--Ec--CCCCCeEEEee---CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 5578888999998888887775543 21 12334454332 2234578899999999877665 467654322343
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCC--CceeEEEecCCCC
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNN 433 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p~~~ 433 (601)
++.-.....+. ......+..+++.|++..++++ .+|.|. ...+.++....++...+ .....+.|.. ++
T Consensus 245 G~sW~~~~~~~-------~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~ 314 (334)
T PRK13684 245 LESWSKPIIPE-------ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PE 314 (334)
T ss_pred CCccccccCCc-------cccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CC
Confidence 43222111100 0012357889999988866555 566554 45565554433321111 3577788876 54
Q ss_pred CEEEEEeCCCeEEEEEc
Q 007489 434 NVLIITTSSNQVYVFDV 450 (601)
Q Consensus 434 ~~l~~~~~dg~v~vwd~ 450 (601)
..+.++..|.|..|+-
T Consensus 315 -~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 315 -KGFVLGQRGVLLRYVG 330 (334)
T ss_pred -ceEEECCCceEEEecC
Confidence 4566777888887764
No 431
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.69 E-value=8.1 Score=38.36 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=25.2
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccC
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
-...+.|+|.|||++|++--..|.|++++..++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 345689999999987776655699999876544
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.65 E-value=7.8 Score=38.04 Aligned_cols=60 Identities=10% Similarity=0.175 Sum_probs=38.8
Q ss_pred eEEEEcCCCcEEEeeCCccchh--hh-cc-ccccceEEEEEeC----CCCEEEEEeeCCeEEEEEecc
Q 007489 50 TLVSADSTGSVQFWDSRHGTLL--QA-HS-FHKGDVNALAAAP----SHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~--~~-~~-~h~~~V~~l~~s~----~~~~l~s~~~dg~i~vw~~~~ 109 (601)
+|+.|+..|.++|++...+... .. +. .-..+|..++.-. .....++.=.-+.+.+|.+..
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~ 106 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSL 106 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEe
Confidence 8999999999999999644311 11 11 2356888887643 223333445677889998844
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.61 E-value=0.23 Score=51.36 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=62.2
Q ss_pred CcEEEEECC--CCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEE
Q 007489 9 GYIRSWDAK--LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 85 (601)
Q Consensus 9 g~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~ 85 (601)
|.+.||++. .|+....+.+....+-..-...|.-.-|-++. ++..+..++.|++.++.+.. ...+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHH
Confidence 567889875 46555444433221111111223222344455 77888889999988776432 355566877666554
Q ss_pred -----------EeCCCCEEEEEeeCCeEEEEEec
Q 007489 86 -----------AAPSHNRVFSTGSDGQVILYKAS 108 (601)
Q Consensus 86 -----------~s~~~~~l~s~~~dg~i~vw~~~ 108 (601)
.||||+.++.+..||.+++|.+.
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 57899999999999999988764
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.60 E-value=0.32 Score=29.44 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.9
Q ss_pred ceeEEEecCCCC--CEEEEEeCCCeEEEEEcCC
Q 007489 422 SVTAAGFPPQNN--NVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 422 ~v~~l~~~p~~~--~~l~~~~~dg~v~vwd~~~ 452 (601)
.+.++.|+|..+ ++|+.+-.-+.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 688999998334 5888888889999999986
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=5.6 Score=36.06 Aligned_cols=154 Identities=13% Similarity=-0.010 Sum_probs=88.5
Q ss_pred EEEEEEEeeCCeEEEEcCCCcEEEeeCCccch---hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCC
Q 007489 39 CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN 115 (601)
Q Consensus 39 ~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 115 (601)
.+..+.|+.+ +...+..+.-++|.|+.+-.. +..+.. .+.-.++.. .|++.+.+..|.-+.+.|+.+.+...
T Consensus 88 l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~- 162 (370)
T COG5276 88 LFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ- 162 (370)
T ss_pred hhheeEeccc-EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce-
Confidence 3444555433 455566677799999976543 233332 133344444 59999999877778888988765311
Q ss_pred CCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEE
Q 007489 116 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 195 (601)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~ 195 (601)
..........+-..++++ +++-+.+..|+-+.
T Consensus 163 -------------lagrya~~~~d~~~v~IS-----------------------------------Gn~AYvA~~d~GL~ 194 (370)
T COG5276 163 -------------LAGRYALPGGDTHDVAIS-----------------------------------GNYAYVAWRDGGLT 194 (370)
T ss_pred -------------eeeeeccCCCCceeEEEe-----------------------------------cCeEEEEEeCCCeE
Confidence 122222233333455554 23777778888888
Q ss_pred EEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccC
Q 007489 196 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN 250 (601)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~ 250 (601)
+-|+.......- .........+.++..+++..+++..+..+.+-+.....
T Consensus 195 ivDVSnp~sPvl-----i~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~s 244 (370)
T COG5276 195 IVDVSNPHSPVL-----IGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS 244 (370)
T ss_pred EEEccCCCCCeE-----EEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence 888876321110 00001111456667778888888777777777666444
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.35 E-value=2.6 Score=44.65 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=46.7
Q ss_pred cceeEEEEccCCCeEEEEecCCcEEEEEcCC-CceeeeeccCcc--------ccccc-CCCCCCCeeEEEEccC---CCE
Q 007489 325 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHTFTPCRE--------EHDRE-IQPSEPPITKMFTSSD---GQW 391 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~--------~~~~~-~~~~~~~i~~l~~spd---~~~ 391 (601)
-.|..|.++|+|++||..+..| |.|..+.. .-....|.+... ....- ...+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3789999999999999988766 56655531 000011111000 00000 0113456677777775 367
Q ss_pred EEEEecCCeEEEEEcC
Q 007489 392 LAAVNCFGDVYIFNLE 407 (601)
Q Consensus 392 las~~~dg~i~iwd~~ 407 (601)
|+.-..|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 7777777777777763
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.34 E-value=0.76 Score=40.68 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=47.8
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCceEEEEe-------ec------cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 385 TSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI-------SR------LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 385 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~-------~~------~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+..++++|++.+.+|.+++||+.+++....- .. .....|..+.++. +|.-|++- .+|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEE-eCCCEEEeccc
Confidence 4458899999999999999999988764221 10 1225678888887 77665554 46788888876
Q ss_pred CC
Q 007489 452 AK 453 (601)
Q Consensus 452 ~~ 453 (601)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 44
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.31 E-value=0.13 Score=52.99 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=58.3
Q ss_pred CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc---cCCCeEEEEecCCcEEEEEcCCCceeeeeccCccccccc
Q 007489 296 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS---YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDRE 372 (601)
Q Consensus 296 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s---~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 372 (601)
|.+.+|+++.- +|...-++...........+.-+.|. ++..++.++..+++|++........ ..|..
T Consensus 153 g~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-------- 222 (1283)
T KOG1916|consen 153 GELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS-------- 222 (1283)
T ss_pred hhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh--------
Confidence 56678887652 22221112111111222233444444 4667788888889998877654322 33444
Q ss_pred CCCCCCCeeEE-----------EEccCCCEEEEEecCCeEEEEEcC
Q 007489 373 IQPSEPPITKM-----------FTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 373 ~~~~~~~i~~l-----------~~spd~~~las~~~dg~i~iwd~~ 407 (601)
|...++.+ ..||||..+|.++.||.++.|.+.
T Consensus 223 ---Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 223 ---HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ---cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 43333332 379999999999999999988763
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.17 E-value=14 Score=39.43 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecC-------CCCcceEEEee-----ecC-CcCccceeEEEEccC---CCeE
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKG-------KVGQGEWIINK-----RQL-PRKLQFAHSMIFSYD---SSQL 339 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~-------~~~~~~~~~~~-----~~~-~~~~~~v~~i~~s~d---~~~l 339 (601)
..|..+.++|+|++++......|.|..+... +.+........ ..+ ......|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5688999999999999966667777777431 01111111111 111 123347889999996 5789
Q ss_pred EEEecCCcEEEEEcCCC
Q 007489 340 IIAGHDRRIYVVDVSSS 356 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~ 356 (601)
++-+.|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999654
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.04 E-value=9.6 Score=37.32 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=87.9
Q ss_pred CeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC
Q 007489 277 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS 356 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~ 356 (601)
....+..+++|.+++++..|.+ |.... .+...|+..... ....+..+.+.+++..++++ ..|.+. +....+
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~--~~s~d--~G~~~W~~~~~~---~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G 310 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNF--YLTWE--PGQPYWQPHNRA---SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTG 310 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccE--EEecC--CCCcceEEecCC---CccceeeeeEcCCCCEEEEe-CCceEE-EecCCC
Confidence 3555677899999999887753 33322 344445443322 23467899999999877655 566543 344444
Q ss_pred cee--eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC--CCceeEEEecCCC
Q 007489 357 ELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQN 432 (601)
Q Consensus 357 ~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~~p~~ 432 (601)
+.- ..|.... .......+..+.|.+++..+++| ..|.+... .+.++.....+... ......+.|.+ +
T Consensus 311 ~~~~~~~f~~~~------~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~-~ 381 (398)
T PLN00033 311 LTEEDFDFEEAD------IKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFD-D 381 (398)
T ss_pred Ccccccceeecc------cCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcC-C
Confidence 311 1222110 00022358899999888766655 56755544 45555433332111 24678999876 5
Q ss_pred CCEEEEEeCCCeEEEE
Q 007489 433 NNVLIITTSSNQVYVF 448 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vw 448 (601)
+ ...+.+.+|.|.-|
T Consensus 382 ~-~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 K-KGFVLGNDGVLLRY 396 (398)
T ss_pred C-ceEEEeCCcEEEEe
Confidence 4 46666678877655
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.72 E-value=4.1 Score=41.75 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~ 109 (601)
...-+.++.-+|.| .++++..||.|.+++....+.-.... ...+-..+.|...| |+++..|+.+.-|.-++
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccC
Confidence 34457777778999 89999999999999987554422222 22344556676444 77777788888887654
No 442
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.43 E-value=15 Score=39.99 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred CCCeEEEEEc---C----CCCEEEEEcCCccEEEEeecCCC------C------cceEEEeeecCCcCccceeEEEEcc-
Q 007489 275 SRKIICSTIS---N----SGMLFAYSDHVKPSLFELKKGKV------G------QGEWIINKRQLPRKLQFAHSMIFSY- 334 (601)
Q Consensus 275 ~~~i~~~~~s---~----~g~~l~~~~~~~v~l~~~~~~~~------~------~~~~~~~~~~~~~~~~~v~~i~~s~- 334 (601)
..+|..+.|. . ..++|++-....+.|+....... . ..+..+...... ..+...++|+|
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tg--g~~~aDv~FnP~ 156 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTG--GFPHADVAFNPW 156 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcC--CCccceEEeccC
Confidence 3567777776 2 23688887777888888322110 1 111111111111 23567899998
Q ss_pred CCCeEEEEecCCcEEEEEcCCCce--eeeeccCcccccccC---CCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREI---QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~---~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~ 409 (601)
+.+.||+....|...||++..... ...+....... +.+ ....+.-..+.|.++.+.|+.++.. .+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCC
Confidence 456899999999999999921111 01111000000 000 0012344578999988888887655 5899999988
Q ss_pred eEEEEeecc-CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 410 RQHWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 410 ~~~~~~~~~-~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.....+... ....|..+.-+|.+..+++.-+ ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 764322222 2367888888882233443333 36788888877
No 443
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.13 E-value=14 Score=36.85 Aligned_cols=63 Identities=8% Similarity=-0.080 Sum_probs=39.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEc-CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC
Q 007489 273 KASRKIICSTISNSGMLFAYSD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 336 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~ 336 (601)
..-.....++|.|||++|++.. .|.|++++..... ...+..+..............|+++|+-
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCCc
Confidence 3446788999999999998876 6999888654311 1111111111111125678899999874
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.92 E-value=1.9 Score=38.22 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=53.1
Q ss_pred EEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCccccc---ccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 331 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD---REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 331 ~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
.+..++.+|++.+.+|.+++||+.+++.+..-..-.+.-. .........|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3456788999999999999999998775432210000000 00002567788899998888777654 5778888877
Q ss_pred CceEE
Q 007489 408 IQRQH 412 (601)
Q Consensus 408 ~~~~~ 412 (601)
-+...
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 66544
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.55 E-value=1.7 Score=42.47 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=36.9
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE 419 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~ 419 (601)
....+.+++.+|++++.|+.+.-|+|.++|+.++...+..+.+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 56678999999999999999999999999999887765555443
No 446
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.52 E-value=24 Score=38.42 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=76.5
Q ss_pred CCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCce----EEEEee-ccCC---------CceeEEEecCCCCCEEEEEeC
Q 007489 377 EPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQR----QHWFIS-RLEG---------ASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 377 ~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~~----~~~~~~-~~~~---------~~v~~l~~~p~~~~~l~~~~~ 441 (601)
..+...++|+|. .+.||..+..|...||++.... ....+. ...+ ..-..+.|.+ +...|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC
Confidence 346778999984 5689999999999999992111 111111 1111 1223788988 7778888775
Q ss_pred CCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 442 SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 442 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
. .+.++|+++...... -........|.++.-+|. +.+.+.+-....+.-+++..
T Consensus 224 ~-~l~~~d~~~~~~~~~---------l~~~~~~~~IlDv~~~~~-~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 S-KLMLIDFESNWQTEY---------LVTAKTWSWILDVKRSPD-NPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred C-ceEEEECCCCCccch---------hccCCChhheeeEEecCC-ccceEEEEecCeEEEEEccC
Confidence 4 589999998753220 011123467888888887 55666666777777777765
No 447
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.45 E-value=11 Score=34.20 Aligned_cols=183 Identities=9% Similarity=0.007 Sum_probs=93.3
Q ss_pred EEEEecCCC--eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC-CeeEEeeccccCCcccCCCCCC
Q 007489 184 MLISAGDDT--KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-CRLDILSVRLENNVESRSSSGG 260 (601)
Q Consensus 184 ~l~s~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~i~i~~~~~~~~~~~~~~~~~ 260 (601)
++-|.|.-| .|+.+|+.+.+........ .+. ..-.++...+..+..+.- +...+|+..+.+
T Consensus 58 LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---~~~---FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~---------- 121 (264)
T PF05096_consen 58 LYESTGLYGQSSLRKVDLETGKVLQSVPLP---PRY---FGEGITILGDKLYQLTWKEGTGFVYDPNTLK---------- 121 (264)
T ss_dssp EEEEECSTTEEEEEEEETTTSSEEEEEE-T---TT-----EEEEEEETTEEEEEESSSSEEEEEETTTTE----------
T ss_pred EEEeCCCCCcEEEEEEECCCCcEEEEEECC---ccc---cceeEEEECCEEEEEEecCCeEEEEccccce----------
Confidence 778888887 8999999886644333221 111 222333335555555543 777778776432
Q ss_pred CCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeE
Q 007489 261 HASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l 339 (601)
.+.++....++. .++ .|++.|+.+ ....++.+|..+ -...-.+....-......++.+.+- +|...
T Consensus 122 -----~~~~~~y~~EGW--GLt--~dg~~Li~SDGS~~L~~~dP~~---f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 122 -----KIGTFPYPGEGW--GLT--SDGKRLIMSDGSSRLYFLDPET---FKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp -----EEEEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT----SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred -----EEEEEecCCcce--EEE--cCCCEEEEECCccceEEECCcc---cceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 556666554443 333 455554443 344555555432 1111112211112223456677775 67666
Q ss_pred EEEecCCcEEEEEcCCCceeeeeccCccccc----ccCCCCCCCeeEEEEccCCCEE-EEE
Q 007489 340 IIAGHDRRIYVVDVSSSELLHTFTPCREEHD----REIQPSEPPITKMFTSSDGQWL-AAV 395 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~spd~~~l-as~ 395 (601)
|=.-....|...|..+|+.+..+.-..-... ........-.+.||+.|..+.| ++|
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6666677899999999988776543110000 0001124568899999876655 444
No 448
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.97 E-value=11 Score=35.18 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=56.7
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC------Ce-EEEEcCCCcEEEeeCCccchhhhcccc-----
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC------GT-LVSADSTGSVQFWDSRHGTLLQAHSFH----- 77 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~------g~-l~s~~~dg~i~vwd~~~~~~~~~~~~h----- 77 (601)
.|.+||+.+++.++++..+..-.. ....+..+.+... ++ .++=+..+-|.|+|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHcc--cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 689999999999999987543221 3456777777641 32 345455678999999987643322211
Q ss_pred --------------ccceEEEEEeC---CCCEEEEEeeCCeEEEEEeccC
Q 007489 78 --------------KGDVNALAAAP---SHNRVFSTGSDGQVILYKASCE 110 (601)
Q Consensus 78 --------------~~~V~~l~~s~---~~~~l~s~~~dg~i~vw~~~~~ 110 (601)
...+..++.+| +++.|+-....+ -++|.+.+.
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 12356666655 566666554332 245555543
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.89 E-value=11 Score=37.10 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=53.2
Q ss_pred EEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc
Q 007489 40 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 40 V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~ 109 (601)
..|..-..+|++|.|+..|.|+++|--.-+....+.+-...|..+..+.+|+++++.+. ..+.+-|+..
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 34444445779999999999999997644455567788889999999999999887663 5677777654
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.54 E-value=4.5 Score=39.73 Aligned_cols=86 Identities=8% Similarity=0.060 Sum_probs=53.7
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEE---------cCCCcee---eeeccCcccccccCCCCCCCeeEEEEccCC---C
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVD---------VSSSELL---HTFTPCREEHDREIQPSEPPITKMFTSSDG---Q 390 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~spd~---~ 390 (601)
.|..+..++.|+.++.++.+|.+.++= +++|+.. +++.-..+.- .....-.+..++|+|+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f---tss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF---TSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee---ccCCceeeeeccccCCccCCc
Confidence 678889999999999999999554432 1233221 1221110000 00122345678999986 5
Q ss_pred EEEEEecCCeEEEEEcCCceEEEE
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~ 414 (601)
.|..-+.|..|+|||+......+.
T Consensus 182 hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhc
Confidence 788888899999999976655444
No 451
>PHA03098 kelch-like protein; Provisional
Probab=90.49 E-value=15 Score=38.15 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCeEEEEecC------CcEEEEEcCCCceee--eeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC--------
Q 007489 335 DSSQLIIAGHD------RRIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-------- 398 (601)
Q Consensus 335 d~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-------- 398 (601)
+++.++.|+.+ ..+..||..+.+-.. .+.. ...... +...+++.++.|+.+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-----------~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~ 455 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-----------SHYGGC--AIYHDGKIYVIGGISYIDNIKVY 455 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-----------cccCce--EEEECCEEEEECCccCCCCCccc
Confidence 56667777632 357888887654221 1111 111111 223366776777643
Q ss_pred CeEEEEEcCCceEEEEeeccCC--CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 007489 399 GDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQ 454 (601)
Q Consensus 399 g~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 454 (601)
..+.+||..+.+... ++.... .....+.+ ++.+++.|+.+ +.|.+||+++.+
T Consensus 456 ~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 456 NIVESYNPVTNKWTE-LSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceEEEecCCCCceee-CCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 238899988776542 222211 11122222 56677777654 478889988765
No 452
>PHA03098 kelch-like protein; Provisional
Probab=90.43 E-value=19 Score=37.37 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=31.6
Q ss_pred CC-eEEEEcCC-----CcEEEeeCCccchh--hhccccccceEEEEEeCCCCEEEEEeeC------CeEEEEEeccCc
Q 007489 48 CG-TLVSADST-----GSVQFWDSRHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGSD------GQVILYKASCES 111 (601)
Q Consensus 48 ~g-~l~s~~~d-----g~i~vwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~i~vw~~~~~~ 111 (601)
++ .++.|+.+ ..+..||..+++-. ..+...... .+++ .-+++..+.||.+ ..+..||..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56 66667654 35778888765422 222211111 1122 2256666677632 346777776643
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.35 E-value=19 Score=35.37 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=82.2
Q ss_pred CEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC---CCeEEEEEeCCeeEEeeccccCCcccCCCCC
Q 007489 183 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS---HTSLLLVQYSCRLDILSVRLENNVESRSSSG 259 (601)
Q Consensus 183 ~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 259 (601)
+.++.|+..|.+++|+.........+.........++-.+..-.|. .+..+.+-..+.+.||.+....+... ..
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~---~g 114 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE---HG 114 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc---cC
Confidence 5999999999999999854332111111111111122222222231 22344455678999999854432210 00
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcC----C-CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc
Q 007489 260 GHASTSLLVQVKSKASRKIICSTISN----S-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 333 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~s~----~-g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 333 (601)
.+-.-+.+.+... +.....+++-| . -.+|++ +-||.+.+|+-+. ..+ ...++.. ---..+.|.
T Consensus 115 ~~~~L~~~yeh~l--~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----~~f---~~~lp~~-llPgPl~Y~ 183 (418)
T PF14727_consen 115 NQYQLELIYEHSL--QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----FAF---SRFLPDF-LLPGPLCYC 183 (418)
T ss_pred cEEEEEEEEEEec--ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----EEE---EEEcCCC-CCCcCeEEe
Confidence 0000111222222 23333333322 2 256666 8999999998654 211 1222321 112456788
Q ss_pred cCCCeEEEEecCCcEEEEEc
Q 007489 334 YDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 334 ~d~~~l~~~~~dg~i~vwd~ 353 (601)
+....|++++.+..+.-|..
T Consensus 184 ~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 184 PRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ecCCEEEEecCceeEEEecH
Confidence 88888999998888888875
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.80 E-value=16 Score=33.60 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=48.3
Q ss_pred eEEEEEEEeeCC-eEEEEcCCCcEEEeeCC------cc-chhhhccc-----cccceEEEEEeCCCCE------------
Q 007489 38 LCIWSLLSLRCG-TLVSADSTGSVQFWDSR------HG-TLLQAHSF-----HKGDVNALAAAPSHNR------------ 92 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----h~~~V~~l~~s~~~~~------------ 92 (601)
.--|.|+|+|.+ .-++....+...+||.. .. .++-++.. -.+..+.+.|+....+
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345889999999 77787888999999986 11 12223331 2346788888754333
Q ss_pred EEEEeeCCeEEEEEec
Q 007489 93 VFSTGSDGQVILYKAS 108 (601)
Q Consensus 93 l~s~~~dg~i~vw~~~ 108 (601)
++.+++||+|.-|...
T Consensus 103 Fif~tEdGTisaW~p~ 118 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEEeCCceEEeecCc
Confidence 5667788888888753
No 455
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.79 E-value=3.6 Score=42.82 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=66.3
Q ss_pred EEeeecCCcEEEEECCC-------C----ce-EEEEEeccCCCCCCCceEEEEEEEe--eCC-eEEEEcCCCcEEEeeCC
Q 007489 2 LYSGSSDGYIRSWDAKL-------G----YE-IYRITVGLGGLGSGPELCIWSLLSL--RCG-TLVSADSTGSVQFWDSR 66 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~-------~----~~-~~~~~~~~~~~~~~h~~~V~~v~~s--~~g-~l~s~~~dg~i~vwd~~ 66 (601)
|+.+.+||.|.+|.+++ . .. ..+...... ....-...+|.++++ ... .||+++....|.|+-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC-eEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 78899999999997632 1 00 000000000 011235589999998 555 67777777788887554
Q ss_pred c--cchhh-hccccccceEEEEEeCCC---C---EEEEEeeCCeEEEEEe
Q 007489 67 H--GTLLQ-AHSFHKGDVNALAAAPSH---N---RVFSTGSDGQVILYKA 107 (601)
Q Consensus 67 ~--~~~~~-~~~~h~~~V~~l~~s~~~---~---~l~s~~~dg~i~vw~~ 107 (601)
. .+... .-..|...|.+|+|-++. . .|++++..|.+.+|++
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3 11111 111367789999998743 2 7888999999999888
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.71 E-value=2.3 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=29.2
Q ss_pred cCCCEEEEEe-cCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 387 SDGQWLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 387 pd~~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
|++++|+++. .++.|.++|..+++....+.. +.....++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v--g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV--GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC--CCCCceEEeC
Confidence 6778776655 578999999998887766665 3345566653
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=89.47 E-value=27 Score=35.63 Aligned_cols=60 Identities=3% Similarity=-0.132 Sum_probs=30.9
Q ss_pred CC-eEEEEcCCC-----cEEEeeCCccch--hhhccccccceEEEEEeCCCCEEEEEeeCC--eEEEEEecc
Q 007489 48 CG-TLVSADSTG-----SVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASC 109 (601)
Q Consensus 48 ~g-~l~s~~~dg-----~i~vwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vw~~~~ 109 (601)
++ .++.|+.++ .+..||..+++- +..+....... +++ .-++...+.||.++ .+..|+..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~ 340 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGD 340 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCC
Confidence 45 567777543 466788776542 22332211111 222 23667667777643 466666544
No 458
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.26 E-value=27 Score=35.46 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=80.7
Q ss_pred EEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCc-cceeEEEEccCCCeEEEEec-------------CC
Q 007489 281 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL-QFAHSMIFSYDSSQLIIAGH-------------DR 346 (601)
Q Consensus 281 ~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~s~d~~~l~~~~~-------------dg 346 (601)
+...++|.+++... ..++.+|+. |..+|. ..++... ..=+.+..-|+|++|+.+.. ..
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~----G~v~~~---~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL----GKVIWE---YDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT------EEEE---EE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC----CCEEEe---eecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence 55668898887755 566666664 455443 2223211 11245678899999888772 22
Q ss_pred cEEEEEcCCCceeeeeccCcccccccC--------------CCCC--CCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCc
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREI--------------QPSE--PPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~ 409 (601)
.|..+| .+|+.+..+........... .... -.++++.+.+ ++.+|+++-.-..|...|..++
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 366777 77877766544322110000 0011 2478899988 6666777766778999999999
Q ss_pred eEEEEeeccCC--Cc----e---------------eEEEecCCCCCEEEEEeCCC---eEEEEEcCCCC
Q 007489 410 RQHWFISRLEG--AS----V---------------TAAGFPPQNNNVLIITTSSN---QVYVFDVEAKQ 454 (601)
Q Consensus 410 ~~~~~~~~~~~--~~----v---------------~~l~~~p~~~~~l~~~~~dg---~v~vwd~~~~~ 454 (601)
+..+.+....+ .. + ....|. -+++-+.--.++ .|.+||=....
T Consensus 304 ~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~--~gQH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 304 KIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWF--WGQHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp -EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS------SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred cEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccc--ccccceEEcCCCCeEEEEEEECCCCC
Confidence 99888765322 00 0 011222 355666666677 88888865443
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.18 E-value=23 Score=34.58 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=67.8
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccc-cc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK-GD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~ 80 (601)
+..+..||.|.-.|.++++.+.+.... +....+..-.+..+|+|..++.+|.+...|..+|+++....... -.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~------~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL------GAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc------CcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 456678888888898888877655421 11234444445558899999999999999998899887776554 11
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
+..-..-.++ .++.++.++.+...+..++.
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCc
Confidence 1122222233 34444467888888888776
No 460
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.09 E-value=27 Score=35.15 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=64.7
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEE
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iw 404 (601)
.|+...+..++ .+-.++...-+..|+.++ +-.+....+. ..++|..+.=.|+++ |..|+.+|.++.
T Consensus 377 nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl----------~ss~V~aived~dns-LWIGTs~Glvk~- 443 (671)
T COG3292 377 NITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGL----------PSSEVSAIVEDPDNS-LWIGTSGGLVKR- 443 (671)
T ss_pred ccchhhhccCC-cEEEEecccchhhhccCCcccccccccCC----------cccceeeeeecCCCC-EEEeccCCeEec-
Confidence 44555565544 455566654466676655 2222222221 567788888899998 778888885543
Q ss_pred EcCCceEEEEeec----cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 405 NLEIQRQHWFISR----LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 405 d~~~~~~~~~~~~----~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
+.+.++....+.. ..++.+..+.+.| ++++-+ +..+| |..|+-....
T Consensus 444 ~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~-~g~Lw~-a~g~g-va~~~sq~~~ 494 (671)
T COG3292 444 DPESGRVLNLLNPGSHGLDGSRVEQLGLGP-DGRLWL-AAGSG-VAAWESQRRM 494 (671)
T ss_pred CccccchhcccccccCcCCcchhhhhccCC-CCceEE-Eecce-eeeeccccce
Confidence 3344332222211 1235677888888 776443 33344 6778776654
No 461
>PHA02790 Kelch-like protein; Provisional
Probab=88.83 E-value=30 Score=35.30 Aligned_cols=103 Identities=8% Similarity=0.012 Sum_probs=55.6
Q ss_pred cCCCeEEEEecCC---cEEEEEcCCCceee--eeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 334 YDSSQLIIAGHDR---RIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 334 ~d~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
-+|+..+.|+.++ .+..||..+.+-.. .+.. .......+ .-+++..+.|+ .+.+||.++
T Consensus 361 ~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-----------~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-----------PHYKSCAL--VFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-----------ccccceEE--EECCEEEEECC---ceEEecCCC
Confidence 3677777777653 46778876543211 1111 11111222 33677667663 578899887
Q ss_pred ceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCCc
Q 007489 409 QRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQL 455 (601)
Q Consensus 409 ~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~ 455 (601)
.+... ++.... ..-.+++.. ++++.++||.+ ..+..||.++++-
T Consensus 425 ~~W~~-~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 425 NTWTL-IDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CcEeE-cCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 76542 232221 111222332 56777888754 4577888887653
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.42 E-value=2.6 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=24.3
Q ss_pred cCCCeEEEEec-CCcEEEEEcCCCceeeeecc
Q 007489 334 YDSSQLIIAGH-DRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 334 ~d~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~ 364 (601)
|++++|+++.. ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 57777776664 78999999988888777764
No 463
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.19 E-value=43 Score=36.47 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=41.7
Q ss_pred eEEEEcCCCcEEEeeCC-ccchhhhc---cccccceEEEEEeCCC------CEEEEEeeCCeEEEEEeccCc
Q 007489 50 TLVSADSTGSVQFWDSR-HGTLLQAH---SFHKGDVNALAAAPSH------NRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~-~~~~~~~~---~~h~~~V~~l~~s~~~------~~l~s~~~dg~i~vw~~~~~~ 111 (601)
+++.+-+.|.+..+... +|++. .+ ..-+..|.|+++.++. ++++.|+.|++++++.+....
T Consensus 551 qiVvalSngelvyfe~d~sgql~-E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d 621 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLN-EFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD 621 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccce-eeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc
Confidence 55555566666655543 33332 23 2345789999998865 579999999999999988544
No 464
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.09 E-value=47 Score=37.16 Aligned_cols=268 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred EEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc-ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCC
Q 007489 42 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 42 ~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
+++.-|||.|+.|+.+-.=+|.--..-..+-++. ...+.-..++.+| .||++.+=|..+.+
T Consensus 369 ala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsP---------vdgtlyvSdp~s~q--------- 430 (1899)
T KOG4659|consen 369 ALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSP---------VDGTLYVSDPLSKQ--------- 430 (1899)
T ss_pred eEEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecC---------cCceEEecCCCcce---------
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
+..++.-...-...-+ -+++|.-+.++-.-+.-
T Consensus 431 ---------v~rv~sl~~~d~~~N~--------------------------------------evvaG~Ge~Clp~desC 463 (1899)
T KOG4659|consen 431 ---------VWRVSSLEPQDSRNNY--------------------------------------EVVAGDGEVCLPADESC 463 (1899)
T ss_pred ---------EEEeccCCccccccCe--------------------------------------eEEeccCcCcccccccc
Q ss_pred ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecc------ccCCcccCCCCCCCCCcceEEEEEecC
Q 007489 201 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR------LENNVESRSSSGGHASTSLLVQVKSKA 274 (601)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (601)
. ...............++++.+|.+....+..|++.+-. .........+.... ....+..-+
T Consensus 464 G--------DGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~----~~~kl~~~~ 531 (1899)
T KOG4659|consen 464 G--------DGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCA----QITKLVDLQ 531 (1899)
T ss_pred C--------cchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCccccc----cccchhhee
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCcc----------------ceeEEEEccCCCe
Q 007489 275 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ----------------FAHSMIFSYDSSQ 338 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~i~~s~d~~~ 338 (601)
-...+.++++|-.+-|.+-+++.|.-.+... ...+ +....+..... ...+|+++++|.+
T Consensus 532 leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~---rV~I--i~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l 606 (1899)
T KOG4659|consen 532 LEWPTSLAVDPMDNSLLVLDTNVVLRITVVH---RVRI--ILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL 606 (1899)
T ss_pred eecccceeecCCCCeEEEeecceEEEEccCc---cEEE--EcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Q ss_pred EEEEec------------CCcEEEE---------------EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 339 LIIAGH------------DRRIYVV---------------DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 339 l~~~~~------------dg~i~vw---------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
.++-+. ||+|.++ |.-+++-...-.. +-..+.++|.+|||..
T Consensus 607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A-----------~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQA-----------KLNSPYALAVSPDGDV 675 (1899)
T ss_pred EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcc-----------ccCCcceEEECCCCcE
Q ss_pred EEEEecCCeEE
Q 007489 392 LAAVNCFGDVY 402 (601)
Q Consensus 392 las~~~dg~i~ 402 (601)
+++-..+-+|+
T Consensus 676 ~IAD~gN~rIr 686 (1899)
T KOG4659|consen 676 IIADSGNSRIR 686 (1899)
T ss_pred EEecCCchhhh
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.68 E-value=2.8 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=20.1
Q ss_pred CCCCeeEEEEccCCCEEEEEe-cC--CeEEEE
Q 007489 376 SEPPITKMFTSSDGQWLAAVN-CF--GDVYIF 404 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~-~d--g~i~iw 404 (601)
........+|||||++|+..+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678899999999888655 44 555555
No 466
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.49 E-value=32 Score=34.09 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=45.1
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
.+.++|+|+..|.|++||.-.-.....+.+ ....|..+..+.+|++|++.+.. .+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~-----------lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPG-----------LGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcc-----------cccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 344999999999999999643333333444 67789999999999998776654 57777764
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.08 E-value=9.7 Score=27.88 Aligned_cols=51 Identities=6% Similarity=0.214 Sum_probs=34.5
Q ss_pred EecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe-CCCeEEEE
Q 007489 395 VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVF 448 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~-~dg~v~vw 448 (601)
+..+|++.-||..+++....+..+. -.+.+++++ |+.+|+++- .-..|.=|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~--fpNGVals~-d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY--FPNGVALSP-DESFVLVAETGRYRILRY 84 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES--SEEEEEE-T-TSSEEEEEEGGGTEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC--ccCeEEEcC-CCCEEEEEeccCceEEEE
Confidence 3446899999999998876666654 689999999 988777663 33444433
No 468
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.06 E-value=42 Score=35.03 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=108.8
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCC---CEEEEE--cCCccEEEEeecCCCCcce-----EEEeeecCCcCccceeEEEE
Q 007489 263 STSLLVQVKSKASRKIICSTISNSG---MLFAYS--DHVKPSLFELKKGKVGQGE-----WIINKRQLPRKLQFAHSMIF 332 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~~--~~~~v~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~i~~ 332 (601)
+|+++-....+....|.|+..-... +..++| ...+-++-.+......... -.....++ .-...|..|.|
T Consensus 59 TPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~-kl~~kvv~Ik~ 137 (670)
T PF10395_consen 59 TPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFEL-KLDDKVVGIKF 137 (670)
T ss_pred CcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEE-EcccceEEEEE
Confidence 4556666666666777777664321 233333 3333455555442000000 00000011 12347889999
Q ss_pred ccCCCeEEEEecCCcEEEEEcCCCcee--eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-C---CeEEEEEc
Q 007489 333 SYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-F---GDVYIFNL 406 (601)
Q Consensus 333 s~d~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-d---g~i~iwd~ 406 (601)
.++++.+++...+|.|.+||...+... ..+..... ....+..-|..........++.+.+. + -..+++.+
T Consensus 138 ~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~----~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l 213 (670)
T PF10395_consen 138 SSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS----INVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISL 213 (670)
T ss_pred ecCCCEEEEEEcCCcEEEEeccccccccccccccccc----cceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEe
Confidence 999999999999999999999333221 12221100 00001111222221112334444443 2 24677777
Q ss_pred --CCceEEEEee--ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEe
Q 007489 407 --EIQRQHWFIS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSF 482 (601)
Q Consensus 407 --~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 482 (601)
+..... .+. ..+........|.-.+|.+.-- .+++|.+|++..-+... +-.++.-+..-. -.-+.+
T Consensus 214 ~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~-----tI~l~~ii~~~~--~~~vSl 283 (670)
T PF10395_consen 214 SNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQK-----TISLPSIIDKES--DDLVSL 283 (670)
T ss_pred ccCCcceE-EeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEE-----EEEechhhcccc--ccceEe
Confidence 222222 222 1111223333343324543333 67789999987654322 111221122111 122334
Q ss_pred CCCCCCCEEEEEcCceEEEEeCC
Q 007489 483 SPSPSSSSVIIYSARAMCVIDFG 505 (601)
Q Consensus 483 ~p~~~~~~~~~~~~~~~~~~~~~ 505 (601)
.|- ..+|+++...+.++.+|+.
T Consensus 284 ~~~-s~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 284 KPP-SPNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred ecC-CCCeEEEEcCCEEEEEeeh
Confidence 333 4679999999999999984
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.90 E-value=1.6 Score=41.78 Aligned_cols=171 Identities=14% Similarity=0.117 Sum_probs=95.9
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCcee-eeeccCcccccccCCCCCCCee-EEEEccCCCEEEEEec
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNC 397 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~-~l~~spd~~~las~~~ 397 (601)
+......+..+-..|||+.+++-+. .++.++++.+.... +.+-...+.+ ....|+ .+..-..|.-|..++.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~------~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGD------SRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCc------hHHHHHHHHHHHhCceeEEEEcC
Confidence 4444567788899999999887765 67889988654321 1111110000 011122 1222235666778888
Q ss_pred CCeEEEE-EcC-CceEE-EEee--ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccccc
Q 007489 398 FGDVYIF-NLE-IQRQH-WFIS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 472 (601)
Q Consensus 398 dg~i~iw-d~~-~~~~~-~~~~--~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 472 (601)
||-|.-| |+. ++..+ ..+. .+.+.++..+.-.. +.+-+++-...|++.++.-...++ +. +..
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~----------lL--~~~ 355 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKL----------LL--FER 355 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcc----------ee--hhh
Confidence 8888776 332 22221 0111 11122333332222 334455666677777766554432 11 111
Q ss_pred CCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCCCCCCCc
Q 007489 473 FPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDD 512 (601)
Q Consensus 473 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (601)
--..+.-+++||. .+++.+.+...+.++.++++.|+..
T Consensus 356 ~~~~~~~~~~Sp~--~~~Ll~e~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 356 AYQAPQLVAMSPN--QAYLLSEDQGKIRLAQLENRNPEIS 393 (733)
T ss_pred hhcCcceeeeCcc--cchheeecCCceEEEEecCCCCCcc
Confidence 1235667899998 7899999999999999998777543
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.90 E-value=5.5 Score=33.80 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=26.5
Q ss_pred CceeEEEecCC-----CCCEEEEEeCCCeEEEEEcCCC
Q 007489 421 ASVTAAGFPPQ-----NNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 421 ~~v~~l~~~p~-----~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
..+.+++|||. .+-+|++.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 47899999991 2357888899999999987754
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.82 E-value=31 Score=35.02 Aligned_cols=113 Identities=12% Similarity=0.207 Sum_probs=56.6
Q ss_pred EEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec------------
Q 007489 330 MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------------ 397 (601)
Q Consensus 330 i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~------------ 397 (601)
+...++|.+++... ..+..+|+. |+.+..+..... ....=..+..-|+|++|+.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~--------~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~ 221 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGG--------YYDFHHDIDELPNGNLLILASETKYVDEDKDVDT 221 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TT--------EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE--
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCc--------ccccccccEECCCCCEEEEEeecccccCCCCccE
Confidence 56678898776554 778899975 776665553210 0011245677889998887761
Q ss_pred -CCeEEEEEcCCceEEEEeecc-------------------CC-------CceeEEEecCCCCCEEEEEeC-CCeEEEEE
Q 007489 398 -FGDVYIFNLEIQRQHWFISRL-------------------EG-------ASVTAAGFPPQNNNVLIITTS-SNQVYVFD 449 (601)
Q Consensus 398 -dg~i~iwd~~~~~~~~~~~~~-------------------~~-------~~v~~l~~~p~~~~~l~~~~~-dg~v~vwd 449 (601)
.-.|..+| .+++..+..... .+ ..+.++.+.+ ....|++.+. -..|...|
T Consensus 222 ~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~-~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 222 VEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP-SDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp -S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET-TTTEEEEEETTT-EEEEEE
T ss_pred ecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC-CCCeEEEEcCcceEEEEEE
Confidence 11355555 555554442110 00 3478999998 4455555554 45888888
Q ss_pred cCCCCc
Q 007489 450 VEAKQL 455 (601)
Q Consensus 450 ~~~~~~ 455 (601)
..++++
T Consensus 300 ~~t~~i 305 (477)
T PF05935_consen 300 YRTGKI 305 (477)
T ss_dssp -TTS-E
T ss_pred CCCCcE
Confidence 777764
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.61 E-value=5.5 Score=35.71 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=30.0
Q ss_pred EEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---CeEEEEEecc
Q 007489 60 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASC 109 (601)
Q Consensus 60 i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~ 109 (601)
-.+||+.+++....-....--..+-.+-+||+.|.+||.- ..+++++...
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC
Confidence 4578888775432211122233334577899999998752 3477777544
No 473
>PRK10115 protease 2; Provisional
Probab=86.59 E-value=50 Score=35.45 Aligned_cols=110 Identities=8% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCeEEEEEcCCCCEEEEEcC--C----ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC----
Q 007489 276 RKIICSTISNSGMLFAYSDH--V----KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---- 345 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~--~----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---- 345 (601)
..+..+.+||||++|+.+.| | .+++.++.+ +..+. ..+.. . -..++|++|++.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---g~~l~----~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~ 196 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---GNWYP----ELLDN-V--EPSFVWANDSWTFYYVRKHPVTL 196 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---CCCCC----ccccC-c--ceEEEEeeCCCEEEEEEecCCCC
Confidence 34667889999999998532 1 244555543 22110 11111 1 1468999999877766543
Q ss_pred --CcEEEEEcCCC--ceeeeeccCcccccccCCCCCCCee-EEEEccCCCEEEEEe---cCCeEEEEEc
Q 007489 346 --RRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVN---CFGDVYIFNL 406 (601)
Q Consensus 346 --g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spd~~~las~~---~dg~i~iwd~ 406 (601)
..|+.+++.++ +....+.. ...... .+..+.|+++++..+ .++.+.+|+.
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e-----------~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEE-----------KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEee-----------CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 35888888777 33334443 122222 334455888876544 3457899985
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.55 E-value=6.6 Score=36.22 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe------CCCeEEEEEcCCCCcccchhcccCCcCccc-
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT------SSNQVYVFDVEAKQLGEWSMQHTFVLPRRY- 470 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~- 470 (601)
...|++||..+.+....-.... +.|++|.|.. +.++++.|. ....+..||+++..... ... ..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~-G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~---~~~-----~~s 84 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGIS-GTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS---LGG-----GSS 84 (281)
T ss_pred CCEEEEEECCCCEeecCCCCce-EEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeee---cCC-----ccc
Confidence 3459999999887754433333 5899999986 666666663 35578999999876322 111 01
Q ss_pred ccCCCcEEEEEeCCCCCCCEEE-----EEcCceEEEEeC
Q 007489 471 QEFPGEVIGLSFSPSPSSSSVI-----IYSARAMCVIDF 504 (601)
Q Consensus 471 ~~~~~~v~~i~~~p~~~~~~~~-----~~~~~~~~~~~~ 504 (601)
..-.++|..+.+... ....++ .++...+..+|=
T Consensus 85 ~~ipgpv~a~~~~~~-d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 85 NSIPGPVTALTFISN-DGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred ccCCCcEEEEEeecc-CCceEEEeceecCCCceEEEEcC
Confidence 123467777777554 344555 334444555443
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=22 Score=39.52 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEe------------------eecCC-cCccceeEEEEccCC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN------------------KRQLP-RKLQFAHSMIFSYDS 336 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~v~~i~~s~d~ 336 (601)
..|.|+....+|+.+.+|.|+ .+|.+..... .-|--. -..++ .+..+|..+++...-
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~--~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYELVYQAE--DGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEEEEecc--CchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 568888888999999999888 5555544111 111000 01122 445689999998888
Q ss_pred CeEEEEecCCcEEEEEcCC
Q 007489 337 SQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~~ 355 (601)
+.+.+-+..|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999965
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.56 E-value=21 Score=32.99 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc------CCCcEEEeeCCccchhhhccc----
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD------STGSVQFWDSRHGTLLQAHSF---- 76 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~------~dg~i~vwd~~~~~~~~~~~~---- 76 (601)
-..|++||..+.+-..--. +-.+.|.+|.|..+. .+++|. ....+..||+.+.+- ..+.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~--------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~ 85 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN--------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSN 85 (281)
T ss_pred CCEEEEEECCCCEeecCCC--------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccc
Confidence 3469999987654432222 567899999998666 555553 456788999886543 22222
Q ss_pred -cccceEEEEEeC-CCCEEE-EEe-eCCeEEEEEeccCcCCCCCCCCCccccceeEEecC-ccccccceeEEEee
Q 007489 77 -HKGDVNALAAAP-SHNRVF-STG-SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVA 146 (601)
Q Consensus 77 -h~~~V~~l~~s~-~~~~l~-s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~ 146 (601)
-.++|..+.+.. |+..++ +|. .++...+...+.. +|..... .......|+.+.+.
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs---------------~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS---------------SWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC---------------ceEeccccccCCCCEEEEEEEE
Confidence 246888888754 444444 333 3444444444443 2555554 33335677888765
No 477
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.39 E-value=31 Score=31.90 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=56.3
Q ss_pred EecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc------CCCEEEEEecCCeEEEEEcCCceEEEEe
Q 007489 342 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS------DGQWLAAVNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 342 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------d~~~las~~~dg~i~iwd~~~~~~~~~~ 415 (601)
+..-|.|-+||+. |++++.+.... .-...+.|+..| .|.+|+---.||+|..||..+++..-.+
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~as~g---------~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRVASSG---------RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEeccCC---------cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 3344789999976 88888885422 334556777755 5677877778999999999988877666
Q ss_pred eccCC-----CceeEEEecC
Q 007489 416 SRLEG-----ASVTAAGFPP 430 (601)
Q Consensus 416 ~~~~~-----~~v~~l~~~p 430 (601)
....+ ...+.|+|..
T Consensus 288 ~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 288 LDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred cCCCCCeEEecCeEEeeeCC
Confidence 65544 3457788865
No 478
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.27 E-value=2.5 Score=25.01 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=19.3
Q ss_pred ccccceEEEEEeCCCCEEEEE-eeC--CeEEEE
Q 007489 76 FHKGDVNALAAAPSHNRVFST-GSD--GQVILY 105 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~-~~d--g~i~vw 105 (601)
...+.-....|+|||++|+-+ ..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567789999999988744 444 555554
No 479
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.70 E-value=68 Score=37.20 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=55.8
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
..+.|..+.+++...-++-+...- +.+=-.. .-+.-..+.......|++++.-. ++.+++....|.+..+. ..+.
T Consensus 658 k~G~vk~l~i~~~~~~~~~g~~~~-~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~--~~~fvald~qg~lt~h~-k~g~ 733 (1774)
T PF11725_consen 658 KDGKVKRLSINQEHPSIAHGDNNV-FALPQRRNKVELGDALEGLEDRVITAFAVVN--DNKFVALDDQGDLTAHQ-KPGR 733 (1774)
T ss_pred cCCceeeeecccCCCccccCCCcc-cccccccCCCCCCccccCCCcCcceeEEEEc--CCceEEeccCCcccccc-CCCC
Confidence 345677777777665555543321 1110000 00111124444557899999885 56677888899999888 5555
Q ss_pred cccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 455 LGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
... -...+..+.|.+++.+..
T Consensus 734 p~~----------l~~~gl~G~ik~l~lD~~ 754 (1774)
T PF11725_consen 734 PVP----------LSRPGLSGEIKDLALDEK 754 (1774)
T ss_pred Ccc----------CCCCCCCcchhheeeccc
Confidence 322 122244688999998776
No 480
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.09 E-value=29 Score=30.55 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=65.8
Q ss_pred eEEEEccCCCeEEEE-ecCCcEEEEE--cCCCce-----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 328 HSMIFSYDSSQLIIA-GHDRRIYVVD--VSSSEL-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 328 ~~i~~s~d~~~l~~~-~~dg~i~vwd--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
+.++|+.+.+.+... +.+-+|.-|| ..+|.. +..+...+. . ..-..-.++...+|++.++.-..+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~--~-----e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP--F-----ESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC--c-----CCCCCCcceEccCCcEEEEEecCc
Confidence 678898887766544 4566776677 566543 222222110 0 011123455566888888888899
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEE
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
+|...|..+++....+.- ....|++++|--.+-..|++.
T Consensus 234 ~V~~~dp~tGK~L~eikl-Pt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKL-PTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEEECCCCCcEEEEEEc-CCCceEEEEecCCCccEEEEE
Confidence 999999999998877764 356899999974122344443
No 481
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.93 E-value=5.3 Score=33.89 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=25.2
Q ss_pred ceEEEEEeCCC------CEEEEEeeCCeEEEEEecc
Q 007489 80 DVNALAAAPSH------NRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 80 ~V~~l~~s~~~------~~l~s~~~dg~i~vw~~~~ 109 (601)
.|.+++|||-| ..|++...++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 4788889999999998765
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.57 E-value=38 Score=30.73 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
.+.....|.+.|.+-.++..|--- +|+.......+|.. + .-..-..|+..|||+.-++.-.++.|-..|..+
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpa-----P-qG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPA-----P-QGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred CcccceeeCCCccEEEeeccccce--ecCcccCceeeecc-----C-CCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 556677788888877775433211 11110111122111 1 122346788899998888777777788777766
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE-EEeeccCCCceeEEEecCCCCC
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
+. -..+..... ....-..+--+|.|+.-++-...+.++.||-...... +.++... ....++-... .++
T Consensus 220 ~~-aev~p~P~~--------~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~-~gr 288 (353)
T COG4257 220 GH-AEVVPQPNA--------LKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDR-HGR 288 (353)
T ss_pred CC-cceecCCCc--------ccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCC-CCcceeeecc-CCc
Confidence 52 223322110 1233445666788888888888888999987766532 2233322 3456666665 555
Q ss_pred EEEEEeCCCeEEEEEcCCCCccc
Q 007489 435 VLIITTSSNQVYVFDVEAKQLGE 457 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~~~~~ 457 (601)
.-++-...|.|.-||.++.+.+.
T Consensus 289 VW~sea~agai~rfdpeta~ftv 311 (353)
T COG4257 289 VWLSEADAGAIGRFDPETARFTV 311 (353)
T ss_pred EEeeccccCceeecCcccceEEE
Confidence 55545556778888887776543
No 483
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.19 E-value=38 Score=30.51 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=72.1
Q ss_pred EEEEcCCCCEEEEEc----CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC-cEEEEEcC
Q 007489 280 CSTISNSGMLFAYSD----HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIYVVDVS 354 (601)
Q Consensus 280 ~~~~s~~g~~l~~~~----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg-~i~vwd~~ 354 (601)
+-++-+||++|.+|. ...+++|+... ....+-|.-....+. ....--+...-|||+.|++|+... +..+|.-.
T Consensus 71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCc
Confidence 345678999999842 24577877653 122333432221221 122334455668999999988774 23444431
Q ss_pred C-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCC
Q 007489 355 S-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG 420 (601)
Q Consensus 355 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~ 420 (601)
. ......+........ ......--.+...|||++++.+..+. .|||..+.+....++...+
T Consensus 149 ~~~~~~~~~~~l~~~~~---~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSD---TLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred cCCCCceeeecchhhhc---cCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCCCC
Confidence 1 111111100000000 00112223567789999999888764 5679888877667776654
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.12 E-value=57 Score=32.54 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEE---------cCCceEEEEeecc----------CCCceeEEEecCCC--CCEE
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFN---------LEIQRQHWFISRL----------EGASVTAAGFPPQN--NNVL 436 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd---------~~~~~~~~~~~~~----------~~~~v~~l~~~p~~--~~~l 436 (601)
-.|..+..|+.|..++-.+.+|.+.++= ++.++........ ..-.+..++|+|+. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4577888999999999999999554432 1233322111110 11245678999932 4678
Q ss_pred EEEeCCCeEEEEEcCCC
Q 007489 437 IITTSSNQVYVFDVEAK 453 (601)
Q Consensus 437 ~~~~~dg~v~vwd~~~~ 453 (601)
+.-+.|+.|++||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88899999999999764
No 485
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.02 E-value=7.5 Score=40.44 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=46.4
Q ss_pred cCCCeEEEEecCCcEEEEEcCC----CceeeeeccCcc-----------cccccCCCCCCCeeEEEEcc----CCCEEEE
Q 007489 334 YDSSQLIIAGHDRRIYVVDVSS----SELLHTFTPCRE-----------EHDREIQPSEPPITKMFTSS----DGQWLAA 394 (601)
Q Consensus 334 ~d~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~l~~sp----d~~~las 394 (601)
++...++++..||.+....... +........... ............+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788899999988888764 211111110000 00000011234456677776 7789999
Q ss_pred EecCCeEEEEEcCCceEEEEe
Q 007489 395 VNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~~~~~~~ 415 (601)
.+.|+++++||+.++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985543
No 486
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.94 E-value=34 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.345 Sum_probs=36.2
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY 292 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 292 (601)
|-.++++.+..+.+|++...... .+.++..- +.|..+.++..|++|++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~-------------~~~~F~Tv--~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP-------------LLCTFSTV--GRVLQLVYSEAGDYLVT 76 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc-------------eeEEEcch--hheeEEEeccccceEEE
Confidence 55667777789999999833322 45555444 78999999999999998
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=34 Score=38.26 Aligned_cols=171 Identities=9% Similarity=0.085 Sum_probs=89.5
Q ss_pred cCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE-EEEEcCCccEEEEeec
Q 007489 227 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDHVKPSLFELKK 305 (601)
Q Consensus 227 ~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~v~l~~~~~ 305 (601)
|.+=++.-++.++.+.+|++............... .+-..+..+ ... .|-|.=++ |+.++.-.|.++-+..
T Consensus 87 FpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~sht---Il~V~LvkP-kpg----vFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 87 FPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHT---ILKVGLVKP-KPG----VFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred chhhcceEEEeCCeEEEEEcCCCCccccccchhhh---heeeeeecC-CCC----cchhhhheeEEecccceEEEEEEEe
Confidence 33446777888999999999985433211111111 011111111 011 12233333 4447777788877765
Q ss_pred CCCCcceEEE-eeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc----CCC---ceeeeeccCcc------cccc
Q 007489 306 GKVGQGEWII-NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV----SSS---ELLHTFTPCRE------EHDR 371 (601)
Q Consensus 306 ~~~~~~~~~~-~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~----~~~---~~~~~~~~~~~------~~~~ 371 (601)
.+.....-.. ....+......|+++....+|+.+++ +.||. +|.+ .++ +..+.+..... ...-
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~-G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFA-GRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEe-ecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 3222111001 11122223447889998888876665 45663 4443 221 10111100000 0000
Q ss_pred cC-CCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 372 EI-QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 372 ~~-~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
.. ..+..+|..++.....+.|.+-+..|+|.+|++..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11 13678999999988888999999999999999965
No 488
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.38 E-value=65 Score=32.64 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=74.0
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC-ceEEEEeeccCCC
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-QRQHWFISRLEGA 421 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 421 (601)
...|.+.+-+-.++..++..... -...|+.+++..++.+ -.|+...-+..|+.++ +...........+
T Consensus 351 ns~g~L~van~stG~~v~sv~q~----------Rg~nit~~~~d~~g~l-Wlgs~q~GLsrl~n~n~~avlde~agl~ss 419 (671)
T COG3292 351 NSIGELMVANGSTGELVRSVHQL----------RGMNITTTLEDSRGRL-WLGSMQNGLSRLDNKNEWAVLDEDAGLPSS 419 (671)
T ss_pred cccceEEEecCCCCcEEEEeeec----------cccccchhhhccCCcE-EEEecccchhhhccCCcccccccccCCccc
Confidence 33444555555566655553332 2355777777775553 3444443366677666 3333333334447
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccC---CCcEEEEEeCCCCCCCEEEEEcCce
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF---PGEVIGLSFSPSPSSSSVIIYSARA 498 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~~~~~~~~~~~ 498 (601)
+|.++.=.| +++ |..++.+|-++. +.+.++.... + .+..| .+.+..+...|+ .++|+....+
T Consensus 420 ~V~aived~-dns-LWIGTs~Glvk~-~pe~~~v~n~--------l-n~~~~~l~~s~~~~lg~~~~---g~Lw~a~g~g 484 (671)
T COG3292 420 EVSAIVEDP-DNS-LWIGTSGGLVKR-DPESGRVLNL--------L-NPGSHGLDGSRVEQLGLGPD---GRLWLAAGSG 484 (671)
T ss_pred ceeeeeecC-CCC-EEEeccCCeEec-Cccccchhcc--------c-ccccCcCCcchhhhhccCCC---CceEEEecce
Confidence 888888888 776 888888885443 4444332110 0 01111 134566666665 5666666666
Q ss_pred EEEEeC
Q 007489 499 MCVIDF 504 (601)
Q Consensus 499 ~~~~~~ 504 (601)
++.++-
T Consensus 485 va~~~s 490 (671)
T COG3292 485 VAAWES 490 (671)
T ss_pred eeeecc
Confidence 655554
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.83 E-value=0.36 Score=46.46 Aligned_cols=132 Identities=9% Similarity=0.136 Sum_probs=90.9
Q ss_pred eEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE-EEecCCeEEEEEc
Q 007489 328 HSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCFGDVYIFNL 406 (601)
Q Consensus 328 ~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la-s~~~dg~i~iwd~ 406 (601)
....|.|.+.-++.++.+-.+..||-. ++...... ..+....++|..++..++ .+-..+.+.+|++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n------------~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN------------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC------------CchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 445677877779999999999999954 55544444 345566788888777654 4556788999999
Q ss_pred CCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 407 EIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 407 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.+..... +.......-.-+.|++ ....++.+...|.+.|++....+... ....|...++++++.+.
T Consensus 105 n~eytqq-LE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~ii-----------v~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 105 NSEYTQQ-LESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRII-----------VMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhhHHH-HhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhh-----------hhcccccceeEEEeccc
Confidence 7654321 1111111222268999 88889999889999999987655311 22237788999999987
No 490
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=80.23 E-value=75 Score=32.68 Aligned_cols=129 Identities=9% Similarity=0.110 Sum_probs=63.0
Q ss_pred CCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCc
Q 007489 287 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR 366 (601)
Q Consensus 287 g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 366 (601)
..+++.+.....+++.+...+....+-++....+......+.+-.+. +.+++=.+.. .|++.+...++........
T Consensus 371 ~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~- 446 (504)
T PF10433_consen 371 HSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPP- 446 (504)
T ss_dssp BSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-T-
T ss_pred ceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCC-
Confidence 46777776667777777520112222111111122222223222222 3344434433 4888888777776665442
Q ss_pred ccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc----CCCceeEEEecC
Q 007489 367 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL----EGASVTAAGFPP 430 (601)
Q Consensus 367 ~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~l~~~p 430 (601)
....|.+.+. ++.+++.+..++.+..+.++........... ....|.++...|
T Consensus 447 ---------~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 447 ---------AGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp ---------TS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred ---------CCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3456776666 5567888888899999998877654232211 125788888766
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.87 E-value=11 Score=39.32 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=39.5
Q ss_pred EEEEEEeeCC-eEEEEcCCC-----cEEEeeCC---ccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc
Q 007489 40 IWSLLSLRCG-TLVSADSTG-----SVQFWDSR---HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 40 V~~v~~s~~g-~l~s~~~dg-----~i~vwd~~---~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~ 109 (601)
-..+.|-|+| .+++-..|| .|.++..+ .|+.-... +....+..++|+-....++. ...+.+++|...+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKN 325 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHH-hhcceEEEEEccc
Confidence 3458899999 888876554 36666543 12221111 23345566777655444443 3456899998766
No 492
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.27 E-value=5.5 Score=22.32 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.0
Q ss_pred EEEEEecCCeEEEEEcCCceEEEEe
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~~ 415 (601)
.++.++.+|.++.+|.++++..+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6778888999999999999887653
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.92 E-value=62 Score=30.94 Aligned_cols=116 Identities=8% Similarity=0.082 Sum_probs=66.9
Q ss_pred ccceeEEEEccCCCeEEEEecCCc------EEEEEcCCC-ceeeee--ccCcccc---cccCCCCCCCeeEEEEccCCCE
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRR------IYVVDVSSS-ELLHTF--TPCREEH---DREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~------i~vwd~~~~-~~~~~~--~~~~~~~---~~~~~~~~~~i~~l~~spd~~~ 391 (601)
.+.+..+.+.+++..+++.+.+|. +..+++... .....+ ....... ...+.......-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788899876666666777777 666665431 000000 0000000 0001111224557888889988
Q ss_pred EEEEecC------CeEEEEEcCCceEEEEe--ecc------------CCCceeEEEecCCCCCEEEEEeC
Q 007489 392 LAAVNCF------GDVYIFNLEIQRQHWFI--SRL------------EGASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 392 las~~~d------g~i~iwd~~~~~~~~~~--~~~------------~~~~v~~l~~~p~~~~~l~~~~~ 441 (601)
+++.-.+ ..|+.++.+ ++....+ +.. .....-+|+++| +++.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEEC
Confidence 8887777 789888877 4443332 221 125678999999 9997777643
No 494
>PRK13684 Ycf48-like protein; Provisional
Probab=78.58 E-value=64 Score=30.95 Aligned_cols=148 Identities=9% Similarity=0.100 Sum_probs=79.9
Q ss_pred ccceeEEEEccCCCeEEEEecCCcEEE-EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRRIYV-VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
...+..+.+.|++.+++++. .|.+.. ++ ..++.-...... ....++.+.+.++++.++++ ..|.++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~----------~~~~l~~i~~~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRN----------SSRRLQSMGFQPDGNLWMLA-RGGQIR 238 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCC----------CcccceeeeEcCCCCEEEEe-cCCEEE
Confidence 45788999999987665544 564443 22 222211122211 45678999999999987765 457654
Q ss_pred EEEcCCceEEEEeecc---CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEE
Q 007489 403 IFNLEIQRQHWFISRL---EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIG 479 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 479 (601)
+=..+.+.....+... ....+.++.|.+ ++. +++++.+|.|. ...+.++ .|..... ..........
T Consensus 239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~-~~~~G~~G~v~-~S~d~G~--tW~~~~~------~~~~~~~~~~ 307 (334)
T PRK13684 239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGE-IWAGGGNGTLL-VSKDGGK--TWEKDPV------GEEVPSNFYK 307 (334)
T ss_pred EccCCCCCccccccCCccccccceeeEEEcC-CCC-EEEEcCCCeEE-EeCCCCC--CCeECCc------CCCCCcceEE
Confidence 3234554432222211 123578899998 766 45566677654 4455444 3432110 0111235677
Q ss_pred EEeCCCCCCCEEEEEcCce
Q 007489 480 LSFSPSPSSSSVIIYSARA 498 (601)
Q Consensus 480 i~~~p~~~~~~~~~~~~~~ 498 (601)
+.|..+ +..++-+..+
T Consensus 308 ~~~~~~---~~~~~~G~~G 323 (334)
T PRK13684 308 IVFLDP---EKGFVLGQRG 323 (334)
T ss_pred EEEeCC---CceEEECCCc
Confidence 777654 3444444444
No 495
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.19 E-value=6.2 Score=21.22 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.0
Q ss_pred CceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
..|.+++..+ .+++++.+-+.+++|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3578888765 6899999999999984
No 496
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.83 E-value=4 Score=22.91 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEeeecCCcEEEEECCCCceEEEE
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRI 25 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~ 25 (601)
|+.++.+|.+..+|..+|+.+.+.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 677888999999999999887654
No 497
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=76.02 E-value=69 Score=29.94 Aligned_cols=48 Identities=6% Similarity=-0.031 Sum_probs=33.9
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
+|++.++-+..|.+.-+|.++|+...... -.+....++|. |.++++|-
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~------------vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF------------LPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE------------CCCCCccccee--CCEEEEEe
Confidence 67777777888999999987776443332 23456788885 88887654
No 498
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.92 E-value=9.4 Score=20.63 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=19.0
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEE
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iw 404 (601)
...++++++|+++++=+.+.+|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5678888888887777777777764
No 499
>PRK13613 lipoprotein LpqB; Provisional
Probab=75.65 E-value=96 Score=32.51 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=87.1
Q ss_pred ceeEEEEccCCCeEEEEecCC-cEEEEEcCCCce----e-eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec--
Q 007489 326 FAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSEL----L-HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-- 397 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg-~i~vwd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-- 397 (601)
.+.+++.++++..+|....++ .+++..+..+.. . ..+ ....++.-.|.++| ++-+...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-------------~~~~Lt~PS~d~~g-~vWtvd~~~ 429 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-------------ADGRLTSPSWDGRG-DLWVVDRDP 429 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-------------ccCcccCCcCcCCC-CEEEecCCC
Confidence 577899999999888777665 455544422222 1 112 22346677787777 4444432
Q ss_pred CC--eEEEEEcCCceEEE-EeeccCCCceeEEEecCCCCCEEEEEeC---CCeEEEEEcCCCCcccchhcccCCcCcccc
Q 007489 398 FG--DVYIFNLEIQRQHW-FISRLEGASVTAAGFPPQNNNVLIITTS---SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ 471 (601)
Q Consensus 398 dg--~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 471 (601)
++ .+++..- +++... ..+.+.+..|+.+..|+ ||-.++.... .++|+|=-+....-... +. .-+..+.
T Consensus 430 ~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSr-DG~RvAvv~~~~g~~~v~va~V~R~~~G~~-~l---~~~~~l~ 503 (599)
T PRK13613 430 ADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVAR-DGVRVALIVEKDGRRSLQIGRIVRDAKAVV-SV---EEFRSLA 503 (599)
T ss_pred CCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECC-CccEEEEEEecCCCcEEEEEEEEeCCCCcE-Ee---eccEEec
Confidence 22 2555553 343321 11223345899999999 9988877654 36787777765432210 00 0122222
Q ss_pred cCCCcEEEEEeCCCCCCCEEEE-Ec----CceEEEEeCCC
Q 007489 472 EFPGEVIGLSFSPSPSSSSVII-YS----ARAMCVIDFGR 506 (601)
Q Consensus 472 ~~~~~v~~i~~~p~~~~~~~~~-~~----~~~~~~~~~~~ 506 (601)
.--..+.+++|..+ ..|.+ .. ..-...+.++.
T Consensus 504 ~~l~~v~~~~W~~~---~sL~Vlg~~~~~~~~v~~v~vdG 540 (599)
T PRK13613 504 PELEDVTDMSWAGD---SQLVVLGREEGGVQQARYVQVDG 540 (599)
T ss_pred cCCCccceeEEcCC---CEEEEEeccCCCCcceEEEecCC
Confidence 22235899999887 34444 31 23345555544
No 500
>PLN02153 epithiospecifier protein
Probab=75.03 E-value=82 Score=30.34 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=30.0
Q ss_pred CeEEEEEcCCceEEEEeec--cCC-CceeEEEecCCCCCEEEEEeCC--------------CeEEEEEcCCCC
Q 007489 399 GDVYIFNLEIQRQHWFISR--LEG-ASVTAAGFPPQNNNVLIITTSS--------------NQVYVFDVEAKQ 454 (601)
Q Consensus 399 g~i~iwd~~~~~~~~~~~~--~~~-~~v~~l~~~p~~~~~l~~~~~d--------------g~v~vwd~~~~~ 454 (601)
..|.+||+.+.+....-.. ... ....+++. - ++.+++.|+.. +.|..||+++.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-V-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEE-E-CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 4588999888765432110 111 11222222 2 56777777742 268888987764
Done!