Query 007489
Match_columns 601
No_of_seqs 861 out of 3903
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 02:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.1E-49 3.6E-54 415.7 44.6 418 1-504 73-609 (611)
2 1nr0_A Actin interacting prote 100.0 2.3E-48 7.8E-53 405.7 47.0 408 2-506 33-567 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 1.7E-47 5.7E-52 398.7 45.4 378 1-502 194-576 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 4.1E-46 1.4E-50 388.2 49.4 398 1-504 30-496 (577)
5 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-43 4.1E-48 382.8 42.0 436 1-506 71-732 (902)
6 1vyh_C Platelet-activating fac 100.0 7.1E-44 2.4E-48 353.0 36.5 283 35-451 106-410 (410)
7 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-43 9.8E-48 379.9 40.3 421 1-485 31-638 (902)
8 3ow8_A WD repeat-containing pr 100.0 2.8E-43 9.7E-48 336.2 35.2 283 35-451 30-320 (321)
9 3sfz_A APAF-1, apoptotic pepti 100.0 5E-43 1.7E-47 397.2 42.7 406 1-506 629-1074(1249)
10 1got_B GT-beta; complex (GTP-b 100.0 1.8E-42 6.1E-47 334.3 40.0 294 19-449 45-340 (340)
11 3iz6_a 40S ribosomal protein R 100.0 1.6E-43 5.5E-48 347.1 31.1 326 9-454 46-377 (380)
12 2ynn_A Coatomer subunit beta'; 100.0 2.7E-42 9.3E-47 327.4 37.1 293 20-453 4-303 (304)
13 1pgu_A Actin interacting prote 100.0 7.2E-42 2.5E-46 359.3 42.5 407 2-505 33-613 (615)
14 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-42 6.2E-47 392.6 38.2 404 1-506 715-1207(1249)
15 4g56_B MGC81050 protein; prote 100.0 6.1E-42 2.1E-46 332.2 36.4 290 35-453 40-344 (357)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-41 4.3E-46 328.9 38.0 303 20-455 6-338 (345)
17 3frx_A Guanine nucleotide-bind 100.0 9.4E-42 3.2E-46 325.9 36.1 283 35-453 15-318 (319)
18 2pbi_B Guanine nucleotide-bind 100.0 4.4E-41 1.5E-45 326.0 39.0 296 20-449 55-354 (354)
19 1vyh_C Platelet-activating fac 100.0 4.5E-42 1.5E-46 340.1 30.6 266 1-406 122-409 (410)
20 3ow8_A WD repeat-containing pr 100.0 1.8E-41 6E-46 323.8 33.0 269 1-407 50-320 (321)
21 4gqb_B Methylosome protein 50; 100.0 1.2E-40 4.2E-45 320.1 36.6 290 35-455 28-334 (344)
22 2hes_X YDR267CP; beta-propelle 100.0 4.9E-40 1.7E-44 315.7 38.8 307 18-452 3-328 (330)
23 1r5m_A SIR4-interacting protei 100.0 1.4E-40 4.8E-45 332.7 34.8 346 10-451 26-424 (425)
24 2xzm_R RACK1; ribosome, transl 100.0 3.3E-40 1.1E-44 319.0 34.9 292 20-453 12-341 (343)
25 2ynn_A Coatomer subunit beta'; 100.0 2.4E-39 8.3E-44 307.1 39.6 294 70-506 5-302 (304)
26 1pgu_A Actin interacting prote 100.0 4E-40 1.4E-44 346.0 37.1 360 1-452 175-614 (615)
27 1got_B GT-beta; complex (GTP-b 100.0 5.2E-40 1.8E-44 317.1 34.0 266 1-405 69-340 (340)
28 4ery_A WD repeat-containing pr 100.0 3.8E-39 1.3E-43 307.7 39.6 284 35-451 21-311 (312)
29 1erj_A Transcriptional repress 100.0 2.7E-39 9.2E-44 318.6 38.8 289 35-453 62-390 (393)
30 2pm9_A Protein WEB1, protein t 100.0 3.9E-41 1.3E-45 335.7 25.0 321 6-453 42-415 (416)
31 4aow_A Guanine nucleotide-bind 100.0 2E-39 6.8E-44 314.0 36.2 309 4-454 9-339 (340)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.3E-39 2.8E-43 309.2 37.9 293 1-412 30-339 (345)
33 3mkq_A Coatomer beta'-subunit; 100.0 4.7E-39 1.6E-43 349.1 40.5 371 1-485 27-437 (814)
34 2pbi_B Guanine nucleotide-bind 100.0 4.9E-39 1.7E-43 311.6 34.8 269 1-405 78-354 (354)
35 3vl1_A 26S proteasome regulato 100.0 1.9E-39 6.4E-44 323.9 32.8 344 1-507 70-420 (420)
36 4gqb_B Methylosome protein 50; 100.0 8.8E-40 3E-44 314.1 28.4 246 36-411 81-334 (344)
37 3frx_A Guanine nucleotide-bind 100.0 5.3E-39 1.8E-43 306.9 33.4 280 1-409 32-318 (319)
38 2xzm_R RACK1; ribosome, transl 100.0 6.4E-39 2.2E-43 309.9 33.6 291 1-410 41-342 (343)
39 1gxr_A ESG1, transducin-like e 100.0 9.3E-38 3.2E-42 301.8 37.6 305 2-450 24-335 (337)
40 2hes_X YDR267CP; beta-propelle 100.0 6.7E-38 2.3E-42 300.8 35.8 282 1-408 26-328 (330)
41 4g56_B MGC81050 protein; prote 100.0 3.3E-38 1.1E-42 305.9 33.5 324 41-506 9-343 (357)
42 3zwl_B Eukaryotic translation 100.0 1.4E-37 4.9E-42 304.6 36.7 297 35-454 30-348 (369)
43 3v7d_B Cell division control p 100.0 1.7E-37 5.9E-42 313.8 37.7 319 1-450 134-461 (464)
44 3mkq_A Coatomer beta'-subunit; 100.0 5.6E-38 1.9E-42 340.6 36.4 356 20-494 4-410 (814)
45 4ery_A WD repeat-containing pr 100.0 1.7E-37 5.7E-42 296.3 34.5 268 1-407 37-311 (312)
46 3iz6_a 40S ribosomal protein R 100.0 1.9E-38 6.3E-43 311.1 28.4 319 58-506 46-375 (380)
47 3dm0_A Maltose-binding peripla 100.0 1.4E-37 4.8E-42 329.9 37.0 286 35-452 380-693 (694)
48 1gxr_A ESG1, transducin-like e 100.0 9E-37 3.1E-41 294.9 38.6 325 36-504 8-335 (337)
49 1erj_A Transcriptional repress 100.0 9E-38 3.1E-42 307.7 31.3 290 1-409 78-390 (393)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9E-37 3.1E-41 306.5 38.8 304 1-453 131-443 (445)
51 1k8k_C P40, ARP2/3 complex 41 100.0 6.9E-38 2.4E-42 307.2 29.9 296 35-454 6-363 (372)
52 3ei3_B DNA damage-binding prot 100.0 1.2E-37 4E-42 306.7 31.4 310 14-452 58-382 (383)
53 3v7d_B Cell division control p 100.0 3E-36 1E-40 304.7 40.6 330 21-485 113-444 (464)
54 1r5m_A SIR4-interacting protei 100.0 2.1E-37 7.3E-42 309.6 30.2 312 1-407 60-424 (425)
55 3odt_A Protein DOA1; ubiquitin 100.0 3.5E-36 1.2E-40 287.5 37.3 288 20-455 9-299 (313)
56 4e54_B DNA damage-binding prot 100.0 1.9E-37 6.3E-42 310.0 29.6 297 35-455 117-433 (435)
57 2pm9_A Protein WEB1, protein t 100.0 7.5E-38 2.6E-42 311.9 26.6 303 36-455 11-340 (416)
58 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-38 6.3E-43 320.0 21.9 312 2-453 176-518 (524)
59 4h5i_A Guanine nucleotide-exch 100.0 8.8E-37 3E-41 296.7 32.1 290 37-453 14-344 (365)
60 1sq9_A Antiviral protein SKI8; 100.0 2.1E-36 7.1E-41 299.5 33.8 321 34-454 13-397 (397)
61 3dwl_C Actin-related protein 2 100.0 1E-37 3.5E-42 306.5 22.9 296 35-450 9-377 (377)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-35 7.8E-40 296.3 40.4 317 35-506 116-442 (445)
63 3i2n_A WD repeat-containing pr 100.0 2.7E-36 9.3E-41 294.1 30.4 294 35-454 16-355 (357)
64 3k26_A Polycomb protein EED; W 100.0 1.9E-36 6.6E-41 296.2 29.3 289 35-452 16-366 (366)
65 4a11_B DNA excision repair pro 100.0 2.7E-36 9.2E-41 299.9 30.3 355 7-496 21-403 (408)
66 4aez_A CDC20, WD repeat-contai 100.0 1.6E-35 5.4E-40 292.9 34.2 271 1-455 105-383 (401)
67 3gre_A Serine/threonine-protei 100.0 1.6E-36 5.3E-41 304.3 26.3 310 13-449 47-437 (437)
68 4gga_A P55CDC, cell division c 100.0 3.3E-35 1.1E-39 292.4 35.1 282 40-454 108-397 (420)
69 3dm0_A Maltose-binding peripla 100.0 1.7E-35 5.9E-40 313.9 34.6 281 1-407 397-692 (694)
70 3i2n_A WD repeat-containing pr 100.0 1.3E-35 4.4E-40 289.3 29.3 279 2-410 34-355 (357)
71 2pm7_B Protein transport prote 100.0 8.8E-35 3E-39 274.7 33.8 252 35-408 7-285 (297)
72 4aow_A Guanine nucleotide-bind 100.0 5.5E-34 1.9E-38 275.7 39.5 306 66-505 26-336 (340)
73 1sq9_A Antiviral protein SKI8; 100.0 4.8E-35 1.6E-39 289.7 32.8 286 1-410 28-397 (397)
74 3k26_A Polycomb protein EED; W 100.0 2.8E-36 9.7E-41 295.0 23.5 306 2-407 37-365 (366)
75 4gga_A P55CDC, cell division c 100.0 1E-34 3.5E-39 288.9 34.7 273 2-411 119-398 (420)
76 3zwl_B Eukaryotic translation 100.0 2.4E-34 8.1E-39 281.7 36.0 281 1-411 46-349 (369)
77 4ggc_A P55CDC, cell division c 100.0 2.3E-34 7.8E-39 275.6 34.7 281 40-453 28-316 (318)
78 3vl1_A 26S proteasome regulato 100.0 1.3E-35 4.4E-40 296.1 27.0 290 1-452 111-419 (420)
79 1yfq_A Cell cycle arrest prote 100.0 1.2E-34 3.9E-39 280.7 32.7 296 35-449 9-321 (342)
80 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-36 9.4E-41 304.1 21.6 319 51-506 176-517 (524)
81 4e54_B DNA damage-binding prot 100.0 1.4E-35 4.8E-40 296.4 25.2 282 1-412 134-434 (435)
82 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-34 5.2E-39 276.1 31.1 265 1-412 31-300 (313)
83 4ggc_A P55CDC, cell division c 100.0 5E-34 1.7E-38 273.2 34.3 271 2-409 39-316 (318)
84 3ei3_B DNA damage-binding prot 100.0 1.9E-34 6.4E-39 283.8 31.7 278 1-408 88-382 (383)
85 3dw8_B Serine/threonine-protei 100.0 3.4E-34 1.2E-38 288.4 32.7 320 35-451 26-445 (447)
86 2pm7_B Protein transport prote 100.0 6.1E-34 2.1E-38 268.9 32.2 254 72-452 3-285 (297)
87 3bg1_A Protein SEC13 homolog; 100.0 2.4E-35 8.4E-40 281.1 22.7 267 35-452 11-293 (316)
88 4a11_B DNA excision repair pro 100.0 4.4E-34 1.5E-38 283.9 28.0 337 1-452 58-405 (408)
89 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-33 4.6E-38 282.3 31.3 275 35-454 131-416 (435)
90 3mmy_A MRNA export factor; mRN 100.0 3.6E-34 1.2E-38 280.2 26.5 306 13-450 23-344 (368)
91 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-35 1.1E-39 287.5 17.4 302 1-485 29-341 (588)
92 3gre_A Serine/threonine-protei 100.0 9.1E-34 3.1E-38 284.2 28.4 293 45-455 35-362 (437)
93 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-32 7.2E-37 268.2 37.4 305 74-506 4-361 (372)
94 3dwl_C Actin-related protein 2 100.0 9.7E-35 3.3E-39 285.3 20.5 300 1-406 25-377 (377)
95 3dw8_B Serine/threonine-protei 100.0 4E-33 1.4E-37 280.5 32.0 360 76-504 26-444 (447)
96 3jrp_A Fusion protein of prote 100.0 5.9E-33 2E-37 272.8 32.0 255 35-411 9-290 (379)
97 4h5i_A Guanine nucleotide-exch 100.0 8.7E-34 3E-38 275.6 25.5 274 1-409 28-344 (365)
98 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-32 1.1E-36 264.4 33.0 276 34-417 8-346 (351)
99 1p22_A F-BOX/WD-repeat protein 100.0 6.2E-33 2.1E-37 277.5 28.5 279 1-430 145-434 (435)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-33 5.2E-38 279.0 23.8 274 2-412 50-346 (402)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 9.3E-33 3.2E-37 273.3 27.1 291 40-455 37-345 (402)
102 3bg1_A Protein SEC13 homolog; 100.0 1.4E-32 4.8E-37 262.0 26.5 248 1-407 27-292 (316)
103 3jrp_A Fusion protein of prote 100.0 4.4E-32 1.5E-36 266.6 30.1 259 68-453 1-288 (379)
104 3bws_A Protein LP49; two-domai 100.0 1.7E-31 5.8E-36 267.4 34.1 302 4-452 94-432 (433)
105 3vu4_A KMHSV2; beta-propeller 100.0 8.4E-32 2.9E-36 260.9 30.7 298 13-454 3-338 (355)
106 4aez_A CDC20, WD repeat-contai 100.0 1.4E-31 4.7E-36 264.6 31.0 276 42-506 98-380 (401)
107 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-32 7.9E-37 267.4 24.5 269 35-451 13-296 (588)
108 1yfq_A Cell cycle arrest prote 100.0 3.9E-31 1.3E-35 255.9 31.7 268 1-405 25-321 (342)
109 1l0q_A Surface layer protein; 100.0 2.5E-30 8.5E-35 255.2 37.9 306 1-454 4-344 (391)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.8E-31 2.7E-35 263.4 33.6 295 37-452 4-391 (450)
111 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-30 6.3E-35 251.9 34.2 269 72-454 5-339 (351)
112 3mmy_A MRNA export factor; mRN 100.0 1E-31 3.4E-36 262.9 23.7 272 1-406 56-344 (368)
113 3jro_A Fusion protein of prote 100.0 9.8E-32 3.3E-36 286.4 25.4 255 35-410 7-287 (753)
114 3vu4_A KMHSV2; beta-propeller 100.0 1E-29 3.6E-34 246.1 33.7 300 62-505 3-335 (355)
115 3lrv_A PRE-mRNA-splicing facto 100.0 3E-30 1E-34 249.3 26.5 265 1-408 50-333 (343)
116 4gq1_A NUP37; propeller, trans 100.0 1.4E-30 4.6E-35 256.2 24.4 277 36-452 88-389 (393)
117 2w18_A PALB2, fancn, partner a 100.0 1.4E-29 4.8E-34 232.3 28.2 274 2-450 57-355 (356)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-29 5.6E-34 253.7 30.9 283 2-408 18-391 (450)
119 1nir_A Nitrite reductase; hemo 100.0 4.1E-29 1.4E-33 254.2 34.1 318 1-456 151-518 (543)
120 2xyi_A Probable histone-bindin 100.0 9.9E-30 3.4E-34 253.5 28.5 256 35-410 126-412 (430)
121 3jro_A Fusion protein of prote 100.0 6.6E-30 2.2E-34 272.3 25.5 256 71-453 2-286 (753)
122 3lrv_A PRE-mRNA-splicing facto 100.0 2.3E-29 7.9E-34 243.0 26.7 246 82-454 40-294 (343)
123 2xyi_A Probable histone-bindin 100.0 3.3E-29 1.1E-33 249.7 28.2 269 73-454 123-412 (430)
124 1l0q_A Surface layer protein; 100.0 3.4E-28 1.1E-32 239.9 34.3 266 50-455 4-278 (391)
125 4gq1_A NUP37; propeller, trans 100.0 5.8E-30 2E-34 251.6 20.6 262 1-408 103-389 (393)
126 1k32_A Tricorn protease; prote 100.0 5.2E-28 1.8E-32 267.6 37.3 396 2-494 27-489 (1045)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.3E-28 7.9E-33 241.5 28.8 285 2-485 78-408 (415)
128 3bws_A Protein LP49; two-domai 100.0 2.6E-28 9E-33 244.2 29.2 268 2-408 137-432 (433)
129 2w18_A PALB2, fancn, partner a 100.0 6.9E-27 2.4E-31 214.6 27.7 279 19-485 25-337 (356)
130 1nir_A Nitrite reductase; hemo 100.0 2.6E-26 9E-31 233.5 34.6 332 44-505 144-513 (543)
131 1k32_A Tricorn protease; prote 100.0 1.3E-25 4.4E-30 248.6 35.3 348 2-452 67-502 (1045)
132 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-24 3.7E-29 232.0 30.6 349 2-454 38-437 (706)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-24 7.8E-29 231.0 32.0 338 37-504 36-457 (741)
134 3u4y_A Uncharacterized protein 99.9 1.4E-23 5E-28 201.6 33.9 281 44-455 4-307 (331)
135 1ri6_A Putative isomerase YBHE 99.9 8.7E-24 3E-28 204.2 31.7 299 2-433 8-334 (343)
136 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-24 4.1E-29 233.1 28.0 344 1-455 50-462 (741)
137 1xfd_A DIP, dipeptidyl aminope 99.9 6.8E-25 2.3E-29 234.4 23.6 334 5-494 33-427 (723)
138 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.6E-28 207.4 26.0 235 9-390 159-410 (415)
139 2ojh_A Uncharacterized protein 99.9 2E-23 6.9E-28 197.0 24.5 254 4-399 17-293 (297)
140 3u4y_A Uncharacterized protein 99.9 1.2E-22 4E-27 195.2 30.0 283 2-412 13-308 (331)
141 1ri6_A Putative isomerase YBHE 99.9 3.2E-22 1.1E-26 193.2 32.3 303 50-485 7-333 (343)
142 1pby_B Quinohemoprotein amine 99.9 2.7E-23 9.1E-28 200.3 24.0 298 1-418 3-320 (337)
143 2ojh_A Uncharacterized protein 99.9 1E-22 3.6E-27 192.1 27.2 255 53-443 17-293 (297)
144 3hfq_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 189.8 33.4 280 7-412 14-323 (347)
145 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-22 1.1E-26 212.9 30.4 332 40-506 28-435 (706)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-22 4.8E-27 216.5 27.0 328 39-494 18-377 (723)
147 1pby_B Quinohemoprotein amine 99.9 7.3E-22 2.5E-26 190.2 26.6 267 50-455 3-313 (337)
148 3vgz_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 186.5 31.7 273 37-443 40-335 (353)
149 3vgz_A Uncharacterized protein 99.9 3.6E-20 1.2E-24 179.6 35.1 282 77-495 39-332 (353)
150 3o4h_A Acylamino-acid-releasin 99.9 9.6E-22 3.3E-26 204.1 23.8 269 37-452 21-315 (582)
151 3scy_A Hypothetical bacterial 99.9 4.6E-20 1.6E-24 179.3 34.3 309 6-429 24-360 (361)
152 3hfq_A Uncharacterized protein 99.9 5.8E-20 2E-24 177.6 34.6 289 57-456 15-323 (347)
153 3scy_A Hypothetical bacterial 99.9 2E-19 6.8E-24 174.8 37.2 315 50-483 15-360 (361)
154 1jmx_B Amine dehydrogenase; ox 99.9 2.5E-20 8.5E-25 180.4 29.1 289 1-417 13-334 (349)
155 1z68_A Fibroblast activation p 99.9 7.8E-21 2.7E-25 202.7 23.8 323 42-485 20-420 (719)
156 1z68_A Fibroblast activation p 99.9 4.9E-21 1.7E-25 204.3 22.2 351 3-455 30-446 (719)
157 3pe7_A Oligogalacturonate lyas 99.9 1.2E-20 3.9E-25 185.7 21.9 323 11-451 12-381 (388)
158 1jmx_B Amine dehydrogenase; ox 99.9 7.1E-20 2.4E-24 177.2 25.0 282 42-455 4-328 (349)
159 3o4h_A Acylamino-acid-releasin 99.8 1.2E-19 4.1E-24 188.3 25.6 258 69-485 11-292 (582)
160 2oiz_A Aromatic amine dehydrog 99.8 5.7E-19 2E-23 170.5 27.7 290 7-434 29-360 (361)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.7E-23 186.0 29.4 364 2-455 31-452 (740)
162 4a5s_A Dipeptidyl peptidase 4 99.8 8.2E-19 2.8E-23 186.9 27.8 297 39-455 18-356 (740)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.4E-18 1.2E-22 166.1 28.8 281 2-410 5-343 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.1E-18 2.1E-22 164.2 30.4 173 275-455 144-344 (365)
165 2oiz_A Aromatic amine dehydrog 99.8 1.1E-17 3.8E-22 161.5 30.0 296 56-486 29-359 (361)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 2.9E-18 1E-22 169.6 26.5 146 1-200 50-222 (434)
167 1qks_A Cytochrome CD1 nitrite 99.8 1.1E-16 3.7E-21 162.1 37.3 318 2-456 170-542 (567)
168 3pe7_A Oligogalacturonate lyas 99.8 9.7E-19 3.3E-23 171.9 21.6 295 62-506 14-384 (388)
169 3c5m_A Oligogalacturonate lyas 99.8 2.9E-18 9.9E-23 169.0 22.0 320 11-455 12-387 (396)
170 2oit_A Nucleoporin 214KDA; NH2 99.8 3.4E-18 1.2E-22 169.1 22.4 166 274-454 91-280 (434)
171 3azo_A Aminopeptidase; POP fam 99.8 1.6E-16 5.4E-21 167.7 26.3 303 35-458 21-375 (662)
172 3azo_A Aminopeptidase; POP fam 99.7 4.8E-16 1.6E-20 164.0 27.3 303 6-450 44-409 (662)
173 1q7f_A NHL, brain tumor CG1071 99.7 5.5E-15 1.9E-19 138.2 31.0 252 76-454 27-282 (286)
174 1q7f_A NHL, brain tumor CG1071 99.7 4.3E-15 1.5E-19 139.0 29.9 246 31-409 23-281 (286)
175 3fvz_A Peptidyl-glycine alpha- 99.7 8.9E-16 3E-20 146.5 24.6 257 36-409 22-323 (329)
176 1qks_A Cytochrome CD1 nitrite 99.7 3.7E-14 1.3E-18 143.6 36.4 339 47-505 165-537 (567)
177 3fvz_A Peptidyl-glycine alpha- 99.7 3E-15 1E-19 142.8 26.2 164 276-453 143-323 (329)
178 2dg1_A DRP35, lactonase; beta 99.7 8.1E-15 2.8E-19 140.5 29.4 264 4-399 22-301 (333)
179 3c5m_A Oligogalacturonate lyas 99.7 3.7E-16 1.3E-20 153.9 20.4 310 62-506 14-384 (396)
180 2dg1_A DRP35, lactonase; beta 99.7 3.7E-15 1.3E-19 142.8 25.6 287 38-451 6-315 (333)
181 2gop_A Trilobed protease; beta 99.7 8.5E-15 2.9E-19 141.2 27.8 285 37-454 14-332 (347)
182 2z2n_A Virginiamycin B lyase; 99.7 6E-13 2.1E-17 125.2 36.3 282 35-454 12-297 (299)
183 3e5z_A Putative gluconolactona 99.7 4.3E-14 1.5E-18 132.8 27.1 248 71-455 20-289 (296)
184 3dsm_A Uncharacterized protein 99.7 3.5E-14 1.2E-18 135.1 25.4 286 6-430 14-321 (328)
185 3sjl_D Methylamine dehydrogena 99.7 6.1E-14 2.1E-18 132.8 26.2 284 8-430 58-383 (386)
186 3e5z_A Putative gluconolactona 99.6 3E-13 1E-17 127.0 28.8 268 19-411 17-289 (296)
187 3no2_A Uncharacterized protein 99.6 1.2E-13 4.2E-18 127.2 25.5 239 1-365 7-262 (276)
188 2z2n_A Virginiamycin B lyase; 99.6 2.8E-12 9.5E-17 120.6 35.5 281 76-506 12-295 (299)
189 2xdw_A Prolyl endopeptidase; a 99.6 2.8E-13 9.6E-18 143.6 31.7 162 275-454 232-416 (710)
190 2gop_A Trilobed protease; beta 99.6 2.2E-13 7.6E-18 131.2 27.7 250 7-410 41-332 (347)
191 3dsm_A Uncharacterized protein 99.6 3.7E-13 1.3E-17 128.0 28.5 267 190-505 15-301 (328)
192 2mad_H Methylamine dehydrogena 99.6 2.3E-12 7.9E-17 124.1 33.8 270 10-415 48-357 (373)
193 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-13 7.7E-18 144.4 27.0 257 34-410 121-416 (710)
194 3sjl_D Methylamine dehydrogena 99.6 6.5E-13 2.2E-17 125.7 26.4 287 43-455 38-366 (386)
195 2bkl_A Prolyl endopeptidase; m 99.6 3.1E-13 1.1E-17 142.8 26.9 163 276-458 227-403 (695)
196 1rwi_B Serine/threonine-protei 99.6 4.9E-13 1.7E-17 123.7 25.2 240 80-454 25-266 (270)
197 1rwi_B Serine/threonine-protei 99.6 3.1E-13 1.1E-17 125.1 23.8 240 39-411 25-267 (270)
198 2mad_H Methylamine dehydrogena 99.6 5.4E-12 1.9E-16 121.5 32.2 285 44-455 27-353 (373)
199 2qc5_A Streptogramin B lactona 99.6 1.6E-11 5.6E-16 115.4 34.7 277 36-451 18-299 (300)
200 3no2_A Uncharacterized protein 99.6 1.5E-12 5.2E-17 119.9 26.5 221 89-440 4-231 (276)
201 2bkl_A Prolyl endopeptidase; m 99.6 2.2E-13 7.6E-18 144.0 21.9 250 34-412 117-401 (695)
202 3c75_H MADH, methylamine dehyd 99.5 1.3E-12 4.6E-17 126.1 24.5 270 9-415 99-409 (426)
203 1yr2_A Prolyl oligopeptidase; 99.5 5.4E-12 1.8E-16 134.3 29.3 162 277-457 269-446 (741)
204 2qc5_A Streptogramin B lactona 99.5 9.9E-11 3.4E-15 109.9 33.4 278 77-504 18-298 (300)
205 3c75_H MADH, methylamine dehyd 99.5 1.4E-11 4.9E-16 118.9 26.0 272 58-455 99-405 (426)
206 3q7m_A Lipoprotein YFGL, BAMB; 99.5 1.1E-10 3.6E-15 113.7 32.3 318 2-449 56-375 (376)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.1E-11 1.1E-15 114.3 27.2 121 276-409 172-300 (314)
208 1mda_H Methylamine dehydrogena 99.5 1.1E-11 3.7E-16 117.9 22.9 274 10-430 47-366 (368)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.9E-15 109.7 28.3 157 277-454 118-301 (314)
210 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.6E-16 131.3 22.6 250 35-411 160-444 (741)
211 4a2l_A BT_4663, two-component 99.4 5.5E-09 1.9E-13 112.2 43.0 409 3-505 102-525 (795)
212 1kb0_A Quinohemoprotein alcoho 99.4 7.2E-11 2.4E-15 123.1 27.0 81 346-439 457-537 (677)
213 3g4e_A Regucalcin; six bladed 99.4 4.2E-10 1.4E-14 105.3 28.3 243 36-397 11-261 (297)
214 1xip_A Nucleoporin NUP159; bet 99.4 6.5E-12 2.2E-16 119.5 15.5 186 276-494 38-231 (388)
215 3hxj_A Pyrrolo-quinoline quino 99.4 6.4E-11 2.2E-15 113.0 22.6 294 2-454 33-326 (330)
216 4a2l_A BT_4663, two-component 99.4 3.2E-08 1.1E-12 106.2 45.9 398 4-506 188-614 (795)
217 3hrp_A Uncharacterized protein 99.4 4.6E-10 1.6E-14 109.7 27.5 258 37-407 130-409 (409)
218 1yiq_A Quinohemoprotein alcoho 99.4 1.9E-10 6.4E-15 120.2 26.2 80 346-438 455-534 (689)
219 3g4e_A Regucalcin; six bladed 99.4 7.5E-10 2.6E-14 103.6 27.6 189 276-495 54-260 (297)
220 3hrp_A Uncharacterized protein 99.3 7.3E-10 2.5E-14 108.3 26.7 255 79-451 131-409 (409)
221 3iuj_A Prolyl endopeptidase; h 99.3 3.6E-10 1.2E-14 119.1 25.4 112 332-458 287-411 (693)
222 1mda_H Methylamine dehydrogena 99.3 1.5E-10 5E-15 110.1 19.2 273 51-455 35-349 (368)
223 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.4E-14 102.4 24.8 250 35-405 42-303 (305)
224 3dr2_A Exported gluconolactona 99.2 1.8E-09 6.1E-14 101.5 23.9 244 70-450 36-304 (305)
225 2hz6_A Endoplasmic reticulum t 99.2 1.9E-13 6.4E-18 132.1 -3.7 101 1-112 11-114 (369)
226 1yiq_A Quinohemoprotein alcoho 99.2 1.5E-09 5.1E-14 113.5 25.4 170 280-455 239-508 (689)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.4E-08 4.7E-13 98.7 30.8 275 48-455 53-340 (376)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 6.7E-09 2.3E-13 98.4 27.7 186 276-495 90-290 (326)
229 1xip_A Nucleoporin NUP159; bet 99.2 2.6E-10 9E-15 108.5 17.5 182 221-439 39-231 (388)
230 1kb0_A Quinohemoprotein alcoho 99.2 2.3E-09 7.8E-14 111.8 26.2 170 280-455 247-510 (677)
231 2qe8_A Uncharacterized protein 99.2 4.3E-10 1.5E-14 107.6 19.2 113 326-448 196-317 (343)
232 2ghs_A AGR_C_1268P; regucalcin 99.2 1.7E-08 5.8E-13 95.7 30.0 146 277-442 135-292 (326)
233 3hxj_A Pyrrolo-quinoline quino 99.2 2.1E-10 7.3E-15 109.3 16.1 301 41-506 23-323 (330)
234 3v9f_A Two-component system se 99.2 2.7E-07 9.1E-12 98.9 40.3 416 4-506 178-611 (781)
235 2qe8_A Uncharacterized protein 99.2 5.6E-10 1.9E-14 106.8 17.5 231 35-404 64-317 (343)
236 3v9f_A Two-component system se 99.2 1.2E-06 4.2E-11 93.8 43.9 410 8-505 136-567 (781)
237 1fwx_A Nitrous oxide reductase 99.2 4.5E-09 1.5E-13 103.8 21.9 310 2-411 18-434 (595)
238 2ece_A 462AA long hypothetical 99.1 2.9E-08 9.9E-13 94.6 26.6 102 10-112 44-176 (462)
239 2ece_A 462AA long hypothetical 99.1 2.4E-08 8.3E-13 95.1 23.7 211 285-507 93-353 (462)
240 3iuj_A Prolyl endopeptidase; h 99.0 3E-08 1E-12 104.5 21.8 192 279-505 178-404 (693)
241 2hz6_A Endoplasmic reticulum t 99.0 2.2E-10 7.7E-15 110.5 4.6 62 48-111 9-70 (369)
242 1kv9_A Type II quinohemoprotei 98.9 7.2E-08 2.5E-12 100.4 22.0 170 280-455 234-491 (668)
243 1fwx_A Nitrous oxide reductase 98.9 2.5E-08 8.5E-13 98.6 17.3 184 230-452 100-361 (595)
244 1kv9_A Type II quinohemoprotei 98.9 5.5E-07 1.9E-11 93.8 28.4 110 2-112 69-190 (668)
245 1w6s_A Methanol dehydrogenase 98.9 4.4E-07 1.5E-11 92.3 25.8 108 2-111 65-193 (599)
246 3nol_A Glutamine cyclotransfer 98.9 2.7E-07 9.2E-12 81.4 20.4 199 276-504 43-252 (262)
247 2ad6_A Methanol dehydrogenase 98.9 1.4E-06 4.7E-11 88.8 28.2 107 2-111 65-187 (571)
248 2ad6_A Methanol dehydrogenase 98.9 6.4E-07 2.2E-11 91.3 25.4 151 298-455 274-497 (571)
249 3nok_A Glutaminyl cyclase; bet 98.9 2.2E-07 7.6E-12 81.8 18.4 208 268-504 47-262 (268)
250 3mbr_X Glutamine cyclotransfer 98.8 2.3E-06 7.9E-11 74.8 23.8 210 266-505 11-232 (243)
251 1flg_A Protein (quinoprotein e 98.8 5.1E-06 1.8E-10 84.7 30.3 109 2-111 71-195 (582)
252 1npe_A Nidogen, entactin; glyc 98.8 1.2E-05 4.1E-10 73.5 30.3 136 276-434 122-263 (267)
253 1w6s_A Methanol dehydrogenase 98.8 2E-06 6.8E-11 87.5 25.8 152 297-455 279-506 (599)
254 1npe_A Nidogen, entactin; glyc 98.8 1E-05 3.5E-10 73.9 28.0 94 9-110 10-111 (267)
255 2iwa_A Glutamine cyclotransfer 98.8 1.1E-06 3.8E-11 78.6 20.5 213 266-506 11-237 (266)
256 2fp8_A Strictosidine synthase; 98.7 4.1E-06 1.4E-10 79.1 23.0 113 327-454 187-315 (322)
257 1k3i_A Galactose oxidase precu 98.7 6.3E-06 2.1E-10 86.1 25.3 104 328-441 402-530 (656)
258 1flg_A Protein (quinoprotein e 98.6 1E-05 3.4E-10 82.6 24.8 153 296-455 291-519 (582)
259 2iwa_A Glutamine cyclotransfer 98.6 5.5E-06 1.9E-10 74.1 19.4 197 223-454 24-239 (266)
260 2xbg_A YCF48-like protein; pho 98.6 0.00043 1.5E-08 65.1 33.7 156 276-450 163-320 (327)
261 2fp8_A Strictosidine synthase; 98.6 2E-05 6.8E-10 74.3 24.4 117 277-409 186-314 (322)
262 2p4o_A Hypothetical protein; p 98.5 9.4E-05 3.2E-09 69.0 26.9 100 327-443 171-279 (306)
263 2p4o_A Hypothetical protein; p 98.5 0.00015 5E-09 67.7 27.0 72 38-111 32-106 (306)
264 3qqz_A Putative uncharacterize 98.4 0.00023 7.9E-09 63.2 25.2 211 275-504 26-251 (255)
265 3ott_A Two-component system se 98.4 0.0035 1.2E-07 66.7 39.2 378 38-506 146-545 (758)
266 3ei3_A DNA damage-binding prot 98.4 0.0011 3.9E-08 72.8 35.5 348 10-454 493-915 (1158)
267 3qqz_A Putative uncharacterize 98.4 0.00066 2.3E-08 60.3 27.5 167 275-451 69-252 (255)
268 3nol_A Glutamine cyclotransfer 98.4 4.4E-05 1.5E-09 67.3 18.9 99 2-112 56-158 (262)
269 1k3i_A Galactose oxidase precu 98.3 5.2E-05 1.8E-09 79.1 21.2 164 280-454 291-499 (656)
270 3nok_A Glutaminyl cyclase; bet 98.3 9.8E-05 3.4E-09 65.1 18.7 194 37-304 54-263 (268)
271 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0074 2.5E-07 62.0 48.8 198 275-505 339-548 (628)
272 4hw6_A Hypothetical protein, I 98.2 0.00074 2.5E-08 66.1 26.1 58 38-97 139-199 (433)
273 3s94_A LRP-6, low-density lipo 98.2 0.0082 2.8E-07 61.5 45.0 159 275-454 348-512 (619)
274 2xe4_A Oligopeptidase B; hydro 98.2 0.00011 3.6E-09 78.0 20.9 155 277-452 175-354 (751)
275 3v64_C Agrin; beta propeller, 98.2 0.0052 1.8E-07 58.2 31.8 122 276-415 159-282 (349)
276 3tc9_A Hypothetical hydrolase; 98.2 0.00059 2E-08 66.7 24.1 59 39-98 138-198 (430)
277 2xe4_A Oligopeptidase B; hydro 98.2 0.0023 7.9E-08 67.7 30.1 165 276-458 271-464 (751)
278 3mbr_X Glutamine cyclotransfer 98.1 0.00035 1.2E-08 61.1 19.6 186 221-442 22-224 (243)
279 3s94_A LRP-6, low-density lipo 98.1 0.011 3.8E-07 60.6 48.8 378 38-506 84-510 (619)
280 3v65_B Low-density lipoprotein 98.1 0.0028 9.5E-08 61.0 27.9 123 276-416 202-326 (386)
281 3v65_B Low-density lipoprotein 98.1 0.0017 5.8E-08 62.6 26.3 94 8-110 95-191 (386)
282 1ijq_A LDL receptor, low-densi 98.1 0.0055 1.9E-07 57.1 29.2 94 8-110 9-109 (316)
283 3v64_C Agrin; beta propeller, 98.1 0.0052 1.8E-07 58.2 28.2 95 8-111 52-149 (349)
284 3p5b_L Low density lipoprotein 98.0 0.012 4.2E-07 56.8 30.2 95 8-111 91-192 (400)
285 3sov_A LRP-6, low-density lipo 98.0 0.0047 1.6E-07 57.5 25.8 194 276-504 35-236 (318)
286 4hw6_A Hypothetical protein, I 97.9 0.0036 1.2E-07 61.2 23.8 169 276-451 228-432 (433)
287 3ott_A Two-component system se 97.9 0.041 1.4E-06 58.4 39.6 371 38-505 191-585 (758)
288 1ijq_A LDL receptor, low-densi 97.9 0.017 5.8E-07 53.8 30.8 201 274-504 28-236 (316)
289 2xbg_A YCF48-like protein; pho 97.9 0.019 6.4E-07 53.8 34.1 187 278-498 124-313 (327)
290 3ei3_A DNA damage-binding prot 97.8 0.064 2.2E-06 59.1 41.7 167 265-454 818-1001(1158)
291 3p5b_L Low density lipoprotein 97.8 0.026 8.8E-07 54.5 31.8 123 276-416 202-328 (400)
292 3sre_A PON1, serum paraoxonase 97.8 0.0069 2.4E-07 56.7 22.6 189 278-493 52-282 (355)
293 3sov_A LRP-6, low-density lipo 97.8 0.026 8.9E-07 52.4 27.4 97 8-111 12-112 (318)
294 2p9w_A MAL S 1 allergenic prot 97.8 0.0021 7.1E-08 58.8 18.0 168 328-509 16-218 (334)
295 3kya_A Putative phosphatase; s 97.8 0.027 9.1E-07 55.2 27.0 132 276-411 310-478 (496)
296 3tc9_A Hypothetical hydrolase; 97.7 0.00072 2.5E-08 66.2 16.1 154 276-452 137-301 (430)
297 3a9g_A Putative uncharacterize 97.7 0.038 1.3E-06 52.3 30.1 73 37-110 28-115 (354)
298 2ism_A Putative oxidoreductase 97.6 0.032 1.1E-06 52.7 25.2 70 38-109 31-114 (352)
299 3m0c_C LDL receptor, low-densi 97.6 0.095 3.2E-06 55.2 31.4 121 276-415 514-639 (791)
300 3m0c_C LDL receptor, low-densi 97.6 0.11 3.8E-06 54.6 31.1 165 274-455 422-592 (791)
301 2g8s_A Glucose/sorbosone dehyd 97.6 0.05 1.7E-06 51.4 25.4 70 39-109 19-107 (353)
302 3amr_A 3-phytase; beta-propell 97.5 0.025 8.5E-07 52.3 22.0 142 295-451 98-262 (355)
303 2xzh_A Clathrin heavy chain 1; 97.5 0.05 1.7E-06 49.3 25.0 235 184-458 80-338 (365)
304 4a0p_A LRP6, LRP-6, low-densit 97.5 0.12 4E-06 53.1 49.5 162 325-506 340-508 (628)
305 1n7d_A LDL receptor, low-densi 97.4 0.0038 1.3E-07 65.2 16.3 121 278-416 498-622 (699)
306 2xzh_A Clathrin heavy chain 1; 97.3 0.085 2.9E-06 47.9 27.3 222 190-455 47-293 (365)
307 3amr_A 3-phytase; beta-propell 97.3 0.098 3.3E-06 48.4 24.7 210 50-364 42-273 (355)
308 3pbp_A Nucleoporin NUP82; beta 97.3 0.016 5.6E-07 54.7 17.8 125 277-404 67-208 (452)
309 2p9w_A MAL S 1 allergenic prot 97.3 0.017 5.8E-07 52.9 17.3 169 276-452 13-215 (334)
310 1n7d_A LDL receptor, low-densi 97.2 0.0008 2.7E-08 70.3 9.4 93 9-110 386-485 (699)
311 2vpj_A Kelch-like protein 12; 97.2 0.08 2.7E-06 48.7 21.8 106 335-454 159-280 (301)
312 3pbp_A Nucleoporin NUP82; beta 97.2 0.029 1E-06 52.9 18.0 154 282-449 27-209 (452)
313 3sre_A PON1, serum paraoxonase 97.2 0.14 4.7E-06 48.0 22.8 147 276-442 112-287 (355)
314 1bpo_A Protein (clathrin); cla 97.2 0.18 6E-06 47.8 26.8 235 184-458 79-337 (494)
315 3kya_A Putative phosphatase; s 97.1 0.034 1.2E-06 54.5 19.0 159 276-452 139-341 (496)
316 3das_A Putative oxidoreductase 97.1 0.17 5.9E-06 47.1 27.5 74 36-109 30-116 (347)
317 2ism_A Putative oxidoreductase 97.1 0.17 5.7E-06 47.8 23.3 150 275-440 30-220 (352)
318 1bpo_A Protein (clathrin); cla 97.0 0.24 8.2E-06 46.9 28.2 222 190-455 46-292 (494)
319 2vpj_A Kelch-like protein 12; 96.8 0.28 9.6E-06 45.0 22.5 67 335-412 206-282 (301)
320 2uvk_A YJHT; unknown function, 96.8 0.23 7.8E-06 47.0 21.7 31 387-417 315-351 (357)
321 2xn4_A Kelch-like protein 2; s 96.8 0.33 1.1E-05 44.6 23.5 104 335-454 155-278 (302)
322 1cru_A Protein (soluble quinop 96.7 0.49 1.7E-05 46.3 28.0 60 38-97 27-98 (454)
323 1tl2_A L10, protein (tachylect 96.5 0.032 1.1E-06 47.4 11.2 157 276-446 41-204 (236)
324 2g8s_A Glucose/sorbosone dehyd 96.4 0.15 5.1E-06 48.1 17.2 158 326-495 19-215 (353)
325 3ii7_A Kelch-like protein 7; p 96.4 0.56 1.9E-05 43.0 24.0 105 335-454 149-274 (306)
326 1zgk_A Kelch-like ECH-associat 96.4 0.6 2.1E-05 42.9 21.9 106 335-454 168-289 (308)
327 3ii7_A Kelch-like protein 7; p 96.3 0.63 2.1E-05 42.7 22.6 65 335-412 200-276 (306)
328 3das_A Putative oxidoreductase 96.3 0.3 1E-05 45.5 18.0 173 272-458 28-239 (347)
329 3a9g_A Putative uncharacterize 96.3 0.75 2.6E-05 43.3 28.6 62 378-440 259-330 (354)
330 2xn4_A Kelch-like protein 2; s 96.3 0.66 2.3E-05 42.5 21.6 67 335-412 204-280 (302)
331 1cru_A Protein (soluble quinop 96.0 0.54 1.8E-05 46.0 19.0 110 326-441 28-163 (454)
332 1xi4_A Clathrin heavy chain; a 95.9 0.89 3.1E-05 50.2 21.0 242 184-457 79-336 (1630)
333 1xi4_A Clathrin heavy chain; a 95.8 1.6 5.5E-05 48.3 22.4 221 191-455 47-292 (1630)
334 2uvk_A YJHT; unknown function, 95.7 0.77 2.6E-05 43.2 18.7 54 400-455 286-345 (357)
335 1zgk_A Kelch-like ECH-associat 95.7 1.3 4.3E-05 40.7 22.1 67 335-412 215-291 (308)
336 4asc_A Kelch repeat and BTB do 95.6 1.4 4.7E-05 40.6 21.5 107 334-454 147-279 (315)
337 1tl2_A L10, protein (tachylect 95.5 0.13 4.6E-06 43.7 10.8 158 326-502 42-206 (236)
338 4asc_A Kelch repeat and BTB do 94.9 2.3 7.8E-05 39.1 24.3 69 335-414 196-283 (315)
339 2woz_A Kelch repeat and BTB do 93.9 3.9 0.00013 37.5 21.8 107 334-454 157-289 (318)
340 3s25_A Hypothetical 7-bladed b 93.4 4.5 0.00015 36.8 22.8 142 280-454 57-218 (302)
341 2be1_A Serine/threonine-protei 92.1 0.12 4.2E-06 47.8 4.3 156 287-459 11-188 (339)
342 3s25_A Hypothetical 7-bladed b 91.4 8.1 0.00028 35.1 24.9 141 281-454 109-257 (302)
343 2wg3_C Hedgehog-interacting pr 91.3 3.4 0.00012 40.3 13.9 113 276-397 14-158 (463)
344 2be1_A Serine/threonine-protei 90.2 0.57 2E-05 43.4 6.9 108 337-455 11-133 (339)
345 3sbq_A Nitrous-oxide reductase 88.5 1.8 6E-05 42.6 8.9 73 377-452 322-408 (638)
346 3sbq_A Nitrous-oxide reductase 87.8 5.2 0.00018 39.4 11.6 110 326-440 324-453 (638)
347 2zwa_A Leucine carboxyl methyl 86.6 29 0.00098 36.0 17.6 151 285-454 396-579 (695)
348 3b7f_A Glycosyl hydrolase, BNR 84.8 27 0.00092 33.0 23.2 172 325-503 55-259 (394)
349 2zwa_A Leucine carboxyl methyl 83.8 43 0.0015 34.6 22.7 114 286-412 500-639 (695)
350 2woz_A Kelch repeat and BTB do 80.8 33 0.0011 31.2 27.3 106 335-454 109-233 (318)
351 3zwu_A Alkaline phosphatase PH 78.1 7.9 0.00027 38.9 9.0 60 379-439 477-548 (592)
352 3b7f_A Glycosyl hydrolase, BNR 76.0 53 0.0018 30.9 29.3 68 37-104 54-142 (394)
353 4a9v_A PHOX; hydrolase, beta-p 75.2 15 0.0005 36.6 9.6 62 378-440 476-549 (592)
354 2wg3_C Hedgehog-interacting pr 73.9 68 0.0023 31.1 28.6 52 38-89 14-79 (463)
355 3zwu_A Alkaline phosphatase PH 71.7 11 0.00038 37.9 8.1 60 326-395 477-548 (592)
356 3kci_A Probable E3 ubiquitin-p 68.0 81 0.0028 29.6 28.5 252 184-451 12-292 (389)
357 4gq2_M Nucleoporin NUP120; bet 67.3 1.4E+02 0.0049 32.2 25.1 74 378-451 236-316 (950)
358 3q6k_A 43.2 kDa salivary prote 65.9 88 0.003 29.3 21.6 152 276-439 152-341 (381)
359 3qhy_B Beta-lactamase inhibito 65.5 74 0.0025 28.3 23.7 107 325-453 141-247 (282)
360 4a9v_A PHOX; hydrolase, beta-p 64.8 26 0.00088 34.9 8.8 61 325-395 476-548 (592)
361 3uc1_A DNA gyrase subunit A; D 64.4 86 0.003 28.6 22.8 122 325-452 95-228 (327)
362 4gq2_M Nucleoporin NUP120; bet 59.9 1.9E+02 0.0066 31.2 24.8 39 326-364 237-275 (950)
363 1zi0_A DNA gyrase subunit A; b 58.2 1.1E+02 0.0037 27.7 27.3 121 326-452 96-226 (307)
364 2zux_A YESW protein; beta-prop 54.3 1.7E+02 0.0059 28.9 27.9 65 9-74 151-245 (591)
365 3qhy_B Beta-lactamase inhibito 54.0 1.2E+02 0.004 26.9 23.7 222 39-355 25-246 (282)
366 3f7f_A Nucleoporin NUP120; nuc 50.2 1.2E+02 0.0042 31.1 11.1 37 326-364 223-259 (729)
367 4fhn_B Nucleoporin NUP120; pro 49.5 62 0.0021 35.9 9.9 39 378-416 238-276 (1139)
368 1suu_A DNA gyrase subunit A; t 48.8 1.5E+02 0.0053 26.7 28.9 113 335-453 113-232 (312)
369 3f7f_A Nucleoporin NUP120; nuc 44.4 44 0.0015 34.3 6.9 37 378-416 222-258 (729)
370 4hvt_A Ritya.17583.B, post-pro 43.7 2.9E+02 0.01 28.5 29.6 100 344-456 318-433 (711)
371 3q6k_A 43.2 kDa salivary prote 41.2 2.3E+02 0.0078 26.5 23.5 77 276-355 220-306 (381)
372 3no0_A DNA gyrase subunit A; D 40.6 1.9E+02 0.0066 25.5 22.3 123 324-453 67-197 (276)
373 4fhn_B Nucleoporin NUP120; pro 38.7 23 0.0008 39.2 4.4 39 326-364 239-277 (1139)
374 2cn3_A Xyloglucanase, beta-1,4 35.4 3.3E+02 0.011 28.3 12.3 113 379-495 24-151 (737)
375 4hvt_A Ritya.17583.B, post-pro 34.4 4.1E+02 0.014 27.4 20.8 73 324-407 349-429 (711)
376 3elq_A Arylsulfate sulfotransf 31.5 4E+02 0.014 26.5 16.0 165 273-449 204-450 (571)
377 4d9s_A UVB-resistance protein 30.3 3.5E+02 0.012 25.4 31.1 161 277-452 122-305 (406)
378 3al9_A Plexin-A2; beta-propell 28.4 1.7E+02 0.0058 29.0 8.2 68 379-447 401-476 (539)
379 3al9_A Plexin-A2; beta-propell 27.1 1.3E+02 0.0046 29.7 7.2 68 327-403 402-476 (539)
380 3l6v_A GYRA, DNA gyrase subuni 26.4 3.9E+02 0.013 24.8 28.9 114 335-453 112-266 (370)
381 3no0_A DNA gyrase subunit A; D 25.5 3.5E+02 0.012 23.8 20.4 168 275-452 67-246 (276)
382 1q47_A Semaphorin 3A; beta pro 25.4 2.4E+02 0.008 27.6 8.4 28 376-403 460-487 (495)
383 3mez_B Mannose-specific lectin 25.4 2E+02 0.0069 21.0 8.6 61 389-452 24-84 (113)
384 4d9s_A UVB-resistance protein 24.5 4.4E+02 0.015 24.7 34.9 211 222-451 123-356 (406)
385 1ukf_A Avirulence protein AVRP 24.1 1.6E+02 0.0055 23.9 5.7 35 35-69 116-152 (188)
386 1zvt_A Topoisomerase IV subuni 23.1 3.7E+02 0.013 23.3 13.3 114 329-452 37-163 (256)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-49 Score=415.72 Aligned_cols=418 Identities=16% Similarity=0.147 Sum_probs=311.6
Q ss_pred CEEeeecCCcEEEEECCCCc--eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC----CcEEEeeCCccchhhh
Q 007489 1 MLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST----GSVQFWDSRHGTLLQA 73 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d----g~i~vwd~~~~~~~~~ 73 (601)
+||+|+.||+|+|||+.+++ ....+. +|...|.+++|+|+| +|++++.+ +.|++|| +++.+..
T Consensus 73 ~lasg~~d~~v~lWd~~~~~~~~~~~~~--------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~ 142 (611)
T 1nr0_A 73 YCASGDVHGNVRIWDTTQTTHILKTTIP--------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGN 142 (611)
T ss_dssp EEEEEETTSEEEEEESSSTTCCEEEEEE--------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBC
T ss_pred EEEEEeCCCCEEEeECCCCcceeeEeec--------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcce
Confidence 48999999999999997654 345566 899999999999999 88877764 4788887 4677788
Q ss_pred ccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 74 HSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
+.+|...|.+++|+|++. .|++|+.|++|++||..++++ ...+.+|...|.+++|+
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-----------------~~~l~~H~~~V~~v~fs------ 199 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----------------KSTFGEHTKFVHSVRYN------ 199 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----------------EEEECCCSSCEEEEEEC------
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-----------------eeeeccccCceEEEEEC------
Confidence 999999999999999987 699999999999999877653 56788999999999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
||++ +|++++.|++|++||..+................+...+.+++|+|++.
T Consensus 200 ---pdg~------------------------~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 200 ---PDGS------------------------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp ---TTSS------------------------EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred ---CCCC------------------------EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 8887 9999999999999998765432211110011113446788999999998
Q ss_pred EEEEeC--CeeEEeeccccCCcccCCCC------------CC--------C-------CCcceEEEEEecCCCCeEEEEE
Q 007489 233 LLVQYS--CRLDILSVRLENNVESRSSS------------GG--------H-------ASTSLLVQVKSKASRKIICSTI 283 (601)
Q Consensus 233 ~l~~~~--~~i~i~~~~~~~~~~~~~~~------------~~--------~-------~~~~~~~~~~~~~~~~i~~~~~ 283 (601)
.|++++ +.+++|++............ .+ + ............|...|.+++|
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 887754 89999998754321100000 00 0 0001123344567889999999
Q ss_pred cCCCCEEEE-EcCCccEEEEeecCCC------------------------------CcceEEEeeecC------------
Q 007489 284 SNSGMLFAY-SDHVKPSLFELKKGKV------------------------------GQGEWIINKRQL------------ 320 (601)
Q Consensus 284 s~~g~~l~~-~~~~~v~l~~~~~~~~------------------------------~~~~~~~~~~~~------------ 320 (601)
+|+|++|++ +.|+.|++|++..... ...+|+......
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 999999999 7899999999864110 001111000000
Q ss_pred --------------------------------CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce--eeeeccCc
Q 007489 321 --------------------------------PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCR 366 (601)
Q Consensus 321 --------------------------------~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~ 366 (601)
..+...+.+++|+|||++||+|+.|++|++||+.+++. +.. ..
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~-- 489 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV-- 489 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE--
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cC--
Confidence 01223578999999999999999999999999986643 233 33
Q ss_pred ccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC-ceEEEE-eeccCCCceeEEEecCCCCCEEEEEeCCCe
Q 007489 367 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-QRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQ 444 (601)
Q Consensus 367 ~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~ 444 (601)
|...|++++|||||++||+++.|++|++|++.+ ++.... +...|...|++++|+| ++++|++++.|++
T Consensus 490 ---------h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~ 559 (611)
T 1nr0_A 490 ---------HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNS 559 (611)
T ss_dssp ---------CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred ---------CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEEEEEECCCc
Confidence 889999999999999999999999999999987 554322 2233778999999999 9999999999999
Q ss_pred EEEEEcCCCCcccchhcccCCcC-cccccC-CCcEEEEEeCCCCCCCEEEEE-cCceEEEEeC
Q 007489 445 VYVFDVEAKQLGEWSMQHTFVLP-RRYQEF-PGEVIGLSFSPSPSSSSVIIY-SARAMCVIDF 504 (601)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~ 504 (601)
|++||+++++. .. ..+.+| ...|.+++|+|+ +. +... .+..+.++++
T Consensus 560 v~lW~~~~~~~----------~~~~~~~~h~~~~v~~v~fs~d--~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 560 VIVWNMNKPSD----------HPIIIKGAHAMSSVNSVIWLNE--TT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEETTCTTS----------CCEEETTSSTTSCEEEEEEEET--TE-EEEEETTSCEEEEEC
T ss_pred EEEEECCCccc----------ccchhhccCcccCeeEEEEcCC--CE-EEEecCCCCEEEEec
Confidence 99999987642 12 346688 799999999998 22 3333 3455666664
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-48 Score=405.66 Aligned_cols=408 Identities=16% Similarity=0.149 Sum_probs=312.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc--hhhhccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFHK 78 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~ 78 (601)
||+++ +++|+|||+.+++....+. +|...|++++|+|+| +||+|+.||+|+|||+.+++ +...+.+|.
T Consensus 33 l~~~~-~~~v~l~~~~~~~~~~~~~--------~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~ 103 (611)
T 1nr0_A 33 IQYCN-GTSVYTVPVGSLTDTEIYT--------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 103 (611)
T ss_dssp EEEEE-TTEEEEEETTCSSCCEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred EEeCC-CCEEEEecCCCcccCeEec--------CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC
Confidence 67776 5699999999999988888 899999999999999 99999999999999997554 345678899
Q ss_pred cceEEEEEeCCCCEEEEEeeC----CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 79 GDVNALAAAPSHNRVFSTGSD----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
+.|.+++|+|++++|++++.+ +.|++||. +.. ...+.+|...|.+++|+
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~-----------------~~~l~gh~~~v~~v~f~-------- 156 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS-----------------NGNLTGQARAMNSVDFK-------- 156 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB-----------------CBCCCCCSSCEEEEEEC--------
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC-----------------cceecCCCCCceEEEEC--------
Confidence 999999999999999998865 47888874 332 45778999999999998
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|++. ..|++|+.|++|++||..+.+.... ...+...+.+++|+|++.++
T Consensus 157 -p~~~-----------------------~~l~s~s~D~~v~lwd~~~~~~~~~-------l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 157 -PSRP-----------------------FRIISGSDDNTVAIFEGPPFKFKST-------FGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp -SSSS-----------------------CEEEEEETTSCEEEEETTTBEEEEE-------ECCCSSCEEEEEECTTSSEE
T ss_pred -CCCC-----------------------eEEEEEeCCCeEEEEECCCCeEeee-------eccccCceEEEEECCCCCEE
Confidence 8764 2699999999999999876432111 01122678899999999888
Q ss_pred EEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEe------cCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeec
Q 007489 235 VQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKS------KASRKIICSTISNSGMLFAY-SDHVKPSLFELKK 305 (601)
Q Consensus 235 ~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~ 305 (601)
++++ +.+++|++.... .+..+.. .|...|.+++|+|+|++|++ +.|++|++||+..
T Consensus 206 as~s~D~~i~lwd~~~g~---------------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGT---------------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp EEEETTSCEEEEETTTCC---------------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCcEEEEECCCCc---------------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 7754 899999986543 2222222 57889999999999999999 7899999999875
Q ss_pred CCCCcce----------------------------------EEE----eeecCCcCccceeEEEEccCCCeEEEEecCCc
Q 007489 306 GKVGQGE----------------------------------WII----NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 306 ~~~~~~~----------------------------------~~~----~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
+..+ |+. ....+.+|...|.+++|+||+++|++++.|++
T Consensus 271 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 271 ---LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp ---TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence 2111 110 01234578889999999999999999999999
Q ss_pred EEEEEcCCCceeeeec-cCccc---------------------------------------------------ccc----
Q 007489 348 IYVVDVSSSELLHTFT-PCREE---------------------------------------------------HDR---- 371 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~-~~~~~---------------------------------------------------~~~---- 371 (601)
|++||+.+++....+. .+... .+.
T Consensus 348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 9999998776544331 00000 000
Q ss_pred ---------------cCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEE
Q 007489 372 ---------------EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVL 436 (601)
Q Consensus 372 ---------------~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 436 (601)
....|...+.+++|+|||++||+|+.|+.|++||+.++.........|...|++++|+| ++++|
T Consensus 428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fsp-dg~~l 506 (611)
T 1nr0_A 428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFL 506 (611)
T ss_dssp EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEE
T ss_pred EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECC-CCCEE
Confidence 00013456889999999999999999999999999887543222234667899999999 99999
Q ss_pred EEEeCCCeEEEEEcCC-CCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeCCC
Q 007489 437 IITTSSNQVYVFDVEA-KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDFGR 506 (601)
Q Consensus 437 ~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~~~ 506 (601)
++++.|++|++|++.+ +++.. ...+..|...|.+++|+|+ +..+... .+..+.++++..
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~---------~~~~~~H~~~V~~v~fspd--g~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAH---------TNSWTFHTAKVACVSWSPD--NVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESC---------CCCCCCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTC
T ss_pred EEEcCCCCEEEEEcCCCCceee---------eeeeeecccceeEEEECCC--CCEEEEEECCCcEEEEECCC
Confidence 9999999999999987 44211 0123459999999999999 4555544 355677888765
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-47 Score=398.71 Aligned_cols=378 Identities=21% Similarity=0.287 Sum_probs=313.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|++|+.||.|++||. +++.+..+. +|...|.+++|+|++ .|++++.|+.|++||.. ++.+..+.+|..
T Consensus 194 ~l~~~~~d~~v~~w~~-~~~~~~~~~--------~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~ 263 (577)
T 2ymu_A 194 TIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS 263 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSS
T ss_pred EEEEEcCCCEEEEEeC-CCcEEEEEe--------cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCC
Confidence 4899999999999995 688888888 899999999999999 99999999999999965 788888999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++|+|+++.|++++.|+.|++|+..... ...+.+|...|.+++|+ |+++
T Consensus 264 ~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~------------------~~~~~~h~~~v~~~~~~---------~~~~ 316 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQL------------------LQTLTGHSSSVWGVAFS---------PDGQ 316 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCE------------------EEEECCCSSCEEEEEEC---------TTSS
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE------------------EEEEecCCCCeEEEEEC---------CCCC
Confidence 99999999999999999999999999975433 56678899999999998 8887
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC-
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS- 238 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 238 (601)
.|++++.|+.|++|+........ ...+...+.+++++|++..++++.
T Consensus 317 ------------------------~l~t~~~d~~i~~w~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 317 ------------------------TIASASDDKTVKLWNRNGQHLQT--------LTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp ------------------------EEEEEETTSCEEEEETTSCEEEE--------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ------------------------EEEEEeCCCeEEEEeCCCCeeEE--------EeCCCCCEEEEEECCCCCEEEEEeC
Confidence 99999999999999976532110 011124677889999998887654
Q ss_pred -CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 239 -CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 239 -~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
+.+++|+... .+......|...|.+++|+|++++|++ +.|+.|++|+.. +..+
T Consensus 365 dg~v~~~~~~~-----------------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----~~~~---- 419 (577)
T 2ymu_A 365 DKTVKLWNRNG-----------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLL---- 419 (577)
T ss_dssp TSEEEEEETTC-----------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----CCEE----
T ss_pred CCEEEEEcCCC-----------------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC----CCEE----
Confidence 7899998531 123334567789999999999999998 689999999853 3332
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
..+..|...|.+++|+||+++|++++.|+.|++||. +++.+..+.+ |...|++++|+||+++||+++
T Consensus 420 -~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~-----------~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 420 -QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-----------HSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp -EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC-----------CSSCEEEEEECTTSCEEEEEE
T ss_pred -EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC-----------CCCCEEEEEEcCCCCEEEEEe
Confidence 345577889999999999999999999999999996 4778888887 899999999999999999999
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCc
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE 476 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
.|+.|+|||.. ++....+.. |...|++++|+| ++++|++++.|+.|++||... + +...+.+|.+.
T Consensus 487 ~d~~i~iw~~~-~~~~~~~~~-h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~-~-----------~~~~~~~h~~~ 551 (577)
T 2ymu_A 487 DDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG-Q-----------LLQTLTGHSSS 551 (577)
T ss_dssp TTSEEEEEETT-SCEEEEEEC-CSSCEEEEEECT-TSSCEEEEETTSEEEEECTTS-C-----------EEEEEECCSSC
T ss_pred CCCEEEEEcCC-CCEEEEEeC-CCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCCC-C-----------EEEEEcCCCCC
Confidence 99999999964 566656664 567999999999 999999999999999999743 3 24567899999
Q ss_pred EEEEEeCCCCCCCEEEEEc-CceEEEE
Q 007489 477 VIGLSFSPSPSSSSVIIYS-ARAMCVI 502 (601)
Q Consensus 477 v~~i~~~p~~~~~~~~~~~-~~~~~~~ 502 (601)
|.+++|+|| +..++..+ +..+.++
T Consensus 552 v~~~~fs~d--g~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 552 VWGVAFSPD--GQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEEEECTT--SSCEEEEETTSCEEEE
T ss_pred EEEEEEcCC--CCEEEEEeCCCEEEEe
Confidence 999999999 34444333 3334443
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-46 Score=388.19 Aligned_cols=398 Identities=20% Similarity=0.302 Sum_probs=310.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.|++|+|||. ++++++++. +|...|++|+|+||| +|++++.|+.|+|||. +++++..+.+|..
T Consensus 30 ~las~~~d~~v~iWd~-~~~~~~~l~--------gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~ 99 (577)
T 2ymu_A 30 TIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 99 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSS
T ss_pred EEEEEeCCCEEEEEEC-CCCEEEEEe--------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCC
Confidence 5899999999999995 789999998 899999999999999 9999999999999996 4888899999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCC----------------C-------------------------
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG----------------L------------------------- 118 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~----------------~------------------------- 118 (601)
.|.+++|+|++++|++++.|+.+++|+........... +
T Consensus 100 ~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (577)
T 2ymu_A 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 179 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECC
T ss_pred CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCC
Confidence 99999999999999999999999999865432100000 0
Q ss_pred -------------------CCccccceeE----EecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccc
Q 007489 119 -------------------SSSEVIKKWI----YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175 (601)
Q Consensus 119 -------------------~~~~~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 175 (601)
........|. ....+..|...|.+++|+ |+++
T Consensus 180 ~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s---------~dg~---------------- 234 (577)
T 2ymu_A 180 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS---------PDGQ---------------- 234 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEEC---------TTSS----------------
T ss_pred CcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEEC---------CCCC----------------
Confidence 0000001111 123345566777777776 6665
Q ss_pred ccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe--CCeeEEeeccccCCcc
Q 007489 176 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVE 253 (601)
Q Consensus 176 ~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~i~i~~~~~~~~~~ 253 (601)
.|++++.|+.|++|+..... +.. ...+...+..++|+|++..++++ ++.+++|+...
T Consensus 235 --------~l~~~~~d~~i~~w~~~~~~-~~~-------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----- 293 (577)
T 2ymu_A 235 --------TIASASDDKTVKLWNRNGQL-LQT-------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----- 293 (577)
T ss_dssp --------CEEEEETTSCEEEECTTSCE-EEE-------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-----
T ss_pred --------EEEEEeCCCEEEEEeCCCCE-EEE-------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-----
Confidence 99999999999999965311 100 01122567788999998877765 47899998542
Q ss_pred cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEE
Q 007489 254 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 332 (601)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 332 (601)
........|...|.+++|+|++++|++ +.++.+++|++.. ..+ ..+..|...+.+++|
T Consensus 294 ------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~----~~~-----~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 294 ------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QHL-----QTLTGHSSSVWGVAF 352 (577)
T ss_dssp ------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEE-----EEECCCSSCEEEEEE
T ss_pred ------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----Cee-----EEEeCCCCCEEEEEE
Confidence 133344567889999999999999998 6899999999753 222 345677889999999
Q ss_pred ccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE
Q 007489 333 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 333 s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~ 412 (601)
+|++++|++++.||.|++||. +++.+..+.. |...|.+++|+||+++|++++.|+.|++||.. ++..
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~-----------~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~ 419 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-----------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 419 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TCCEEEEEEC-----------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEE
T ss_pred CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC-----------CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEE
Confidence 999999999999999999995 5778888887 88999999999999999999999999999965 4444
Q ss_pred EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEE
Q 007489 413 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVI 492 (601)
Q Consensus 413 ~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~ 492 (601)
..+.. |...|++++|+| ++++|++++.|+.|++||+.... ...+.+|...|.+++|+|+ +..+.
T Consensus 420 ~~~~~-~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~------------~~~~~~~~~~v~~~~~spd--~~~la 483 (577)
T 2ymu_A 420 QTLTG-HSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQL------------LQTLTGHSSSVRGVAFSPD--GQTIA 483 (577)
T ss_dssp EEEEC-CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCE------------EEEEECCSSCEEEEEECTT--SCEEE
T ss_pred EEecC-CCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCE------------EEEEcCCCCCEEEEEEcCC--CCEEE
Confidence 45554 567999999999 99999999999999999975532 3457789999999999998 33333
Q ss_pred EE-cCceEEEEeC
Q 007489 493 IY-SARAMCVIDF 504 (601)
Q Consensus 493 ~~-~~~~~~~~~~ 504 (601)
.. .+..+.+++.
T Consensus 484 s~~~d~~i~iw~~ 496 (577)
T 2ymu_A 484 SASDDKTVKLWNR 496 (577)
T ss_dssp EEETTSEEEEEET
T ss_pred EEeCCCEEEEEcC
Confidence 33 2334555554
No 5
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=382.85 Aligned_cols=436 Identities=11% Similarity=0.093 Sum_probs=294.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchh--------
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL-------- 71 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~-------- 71 (601)
+||+++.|++|+|||+.+++++..+. |...|++++|+|++ +|++|+.||.|++||+.++++.
T Consensus 71 ~L~S~s~D~~v~lWd~~~~~~~~~~~---------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 71 YLVVINAKDTVYVLSLYSQKVLTTVF---------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp EEEEEETTCEEEEEETTTCSEEEEEE---------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred EEEEEECcCeEEEEECCCCcEEEEEc---------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence 48999999999999999999998886 55789999999999 9999999999999999987653
Q ss_pred ---hhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCC----CccccceeEEecCccccccceeEE
Q 007489 72 ---QAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLS----SSEVIKKWIYVGSVRAHTHDVRAL 143 (601)
Q Consensus 72 ---~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~l 143 (601)
..+.+|.+.|.+++|+|+ +..|++|+.|+.| +||+.+++........ ....... ......|...|.++
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS---EKTNEKRTPKVIQS 217 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC---CCTTSCBCCCEEEE
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc---cccccccCCCeEEE
Confidence 345789999999999996 5789999999999 9999886530000000 0000000 01123456789999
Q ss_pred EeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCC--------CccC-CCC
Q 007489 144 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP--------HEIC-PAP 214 (601)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~--------~~~~-~~~ 214 (601)
+|+ |+|+ +|++|+.|+.|++||+++.+.+.. +... ..+
T Consensus 218 ~fs---------pdg~------------------------~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~ 264 (902)
T 2oaj_A 218 LYH---------PNSL------------------------HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI 264 (902)
T ss_dssp EEC---------TTSS------------------------EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred EEc---------CCCC------------------------EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence 998 8887 999999999999999987543221 1000 000
Q ss_pred Cc--cceeeeecccc----CCCe-EEEEEeC-------CeeEEeecccc------------------CCcccC-------
Q 007489 215 QR--VPIHLVHNTIF----SHTS-LLLVQYS-------CRLDILSVRLE------------------NNVESR------- 255 (601)
Q Consensus 215 ~~--~~~~~~~~~~~----~~~~-~~l~~~~-------~~i~i~~~~~~------------------~~~~~~------- 255 (601)
.. .....+.+++| +|++ .++++++ ..+.+|++... ......
T Consensus 265 ~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 265 RDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 00 11235667777 4543 4555542 15666663210 000000
Q ss_pred ----------CCC-CCCCCc---------ceEEEEE--------------------------------------------
Q 007489 256 ----------SSS-GGHAST---------SLLVQVK-------------------------------------------- 271 (601)
Q Consensus 256 ----------~~~-~~~~~~---------~~~~~~~-------------------------------------------- 271 (601)
.+. .+...+ ..+....
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 000 000000 0000000
Q ss_pred -------ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCc-ceEEEe--eecCCcCccceeEEEEccCCCeEE
Q 007489 272 -------SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQ-GEWIIN--KRQLPRKLQFAHSMIFSYDSSQLI 340 (601)
Q Consensus 272 -------~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~v~~i~~s~d~~~l~ 340 (601)
.+|...+.+++|+|++++|++ +.|++|++||+....... ..+.+. +....+|...|.+++|+||+++||
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LA 504 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELA 504 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEE
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEE
Confidence 011223344566899999999 799999999998621110 111111 000126778999999999999999
Q ss_pred EEecCCcEEEEEcCCCc---------------------------------------------eeeeeccCcccccccCCC
Q 007489 341 IAGHDRRIYVVDVSSSE---------------------------------------------LLHTFTPCREEHDREIQP 375 (601)
Q Consensus 341 ~~~~dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~ 375 (601)
+|+.||+|+|||+.+++ ++.++.+
T Consensus 505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~----------- 573 (902)
T 2oaj_A 505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA----------- 573 (902)
T ss_dssp EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-----------
T ss_pred EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-----------
Confidence 99999999999997653 1333333
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEE--Eeec---cCCCceeEEEec-----CCCC---CEEEEEeCC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW--FISR---LEGASVTAAGFP-----PQNN---NVLIITTSS 442 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~--~~~~---~~~~~v~~l~~~-----p~~~---~~l~~~~~d 442 (601)
|...|++++||||| +||+|+.|++|+|||+++..... .+.. .|...|++++|+ | |+ .+|++++.|
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDM 651 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETT
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecC
Confidence 99999999999999 99999999999999998887643 2221 355789999999 8 74 899999999
Q ss_pred CeEEEEEc---CCCCcccchhcccCCcCcccccC-----CCcEEEEE-eCCC-------------------CCCCEEEEE
Q 007489 443 NQVYVFDV---EAKQLGEWSMQHTFVLPRRYQEF-----PGEVIGLS-FSPS-------------------PSSSSVIIY 494 (601)
Q Consensus 443 g~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~-~~p~-------------------~~~~~~~~~ 494 (601)
++|++||+ .+++. ...+.+| .++|.++. |+.+ ..+..+++.
T Consensus 652 ~tv~~wd~~p~~~g~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~ 720 (902)
T 2oaj_A 652 GEVITYKILPASGGKF-----------DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT 720 (902)
T ss_dssp SEEEEEEEEECGGGCE-----------EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE
T ss_pred CcEEEEEEecCCCCcE-----------EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE
Confidence 99999999 56653 2233333 46777776 6632 024567777
Q ss_pred cCceEEEEeCCC
Q 007489 495 SARAMCVIDFGR 506 (601)
Q Consensus 495 ~~~~~~~~~~~~ 506 (601)
+...+.+|++..
T Consensus 721 ~~~~ir~~~~~~ 732 (902)
T 2oaj_A 721 GFDDIRLITLGK 732 (902)
T ss_dssp CSSEEEEECTTC
T ss_pred eccceEEEeCcc
Confidence 788888888754
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-44 Score=352.97 Aligned_cols=283 Identities=14% Similarity=0.209 Sum_probs=252.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+|...|++++|+|++ .|++|+.||.|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+..+
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~- 184 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC- 184 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-
Confidence 899999999999999 999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+.+|...|.+++|+ |++. .|++|+.|+.
T Consensus 185 ----------------~~~~~~h~~~V~~v~~~---------p~~~------------------------~l~s~s~D~~ 215 (410)
T 1vyh_C 185 ----------------IRTMHGHDHNVSSVSIM---------PNGD------------------------HIVSASRDKT 215 (410)
T ss_dssp ----------------EECCCCCSSCEEEEEEC---------SSSS------------------------EEEEEETTSE
T ss_pred ----------------eEEEcCCCCCEEEEEEe---------CCCC------------------------EEEEEeCCCe
Confidence 67888999999999998 8886 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++||+.+.. .+ .....
T Consensus 216 i~~wd~~~~~--------------------------------------------------------------~~-~~~~~ 232 (410)
T 1vyh_C 216 IKMWEVQTGY--------------------------------------------------------------CV-KTFTG 232 (410)
T ss_dssp EEEEETTTCC--------------------------------------------------------------EE-EEEEC
T ss_pred EEEEECCCCc--------------------------------------------------------------EE-EEEeC
Confidence 9999987521 11 11224
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC-----------------
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD----------------- 335 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d----------------- 335 (601)
|...|.+++++|++.+|++ +.|+.|++|++.. +... ..+..|...|.+++|+|+
T Consensus 233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~---~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (410)
T 1vyh_C 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECK-----AELREHRHVVECISWAPESSYSSISEATGSETKKS 304 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEE-----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred CCccEEEEEECCCCCEEEEEcCCCeEEEEECCC---Ccee-----eEecCCCceEEEEEEcCcccccchhhhcccccccc
Confidence 5678999999999999998 6899999999975 3332 445678889999999996
Q ss_pred ---CCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE
Q 007489 336 ---SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 336 ---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~ 412 (601)
+.+|++|+.|+.|++||+.+++++.++.+ |...|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-----------h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----------HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-----------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 67899999999999999999999999988 8999999999999999999999999999999998887
Q ss_pred EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 413 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 413 ~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
..+.. |...|++++|+| ++.+|++++.|++|++|++.
T Consensus 374 ~~~~~-h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 374 KTLNA-HEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEC-CSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred EEEcC-CCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 77764 557899999999 99999999999999999863
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-43 Score=379.90 Aligned_cols=421 Identities=12% Similarity=0.078 Sum_probs=285.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||+|+|||..+++.+..+ .|...|++|+|+| | +|++++.|+.|+|||+.+++++..+. |.+
T Consensus 31 ~lAsgs~Dg~I~lw~~~~~~~~~~~---------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~ 99 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQVEVVIKL---------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG 99 (902)
T ss_dssp EEEEEETTSEEEEECSTTCEEEEEC---------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSS
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEc---------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCC
Confidence 4899999999999999877665543 4788999999999 7 89999999999999999999888886 678
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|++++|+|++++|++|+.||.|++||+.++...... ....|.....+.+|...|.+++|+ |++.
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~------i~~~~~~~~~~~~h~~~V~sl~~s---------p~~~ 164 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK------LDNLQKSSFFPAARLSPIVSIQWN---------PRDI 164 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE------ECCHHHHHTCSSSCCCCCCEEEEE---------TTEE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce------eccccccccccccCCCCeEEEEEc---------cCCC
Confidence 9999999999999999999999999999886530000 000000003457799999999999 7542
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccC---CC--------CCccceeeeeccccC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC---PA--------PQRVPIHLVHNTIFS 228 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~ 228 (601)
..|++|+.|+.| +||+++.......... .. ....+...+.+++|+
T Consensus 165 -----------------------~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 165 -----------------------GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp -----------------------EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred -----------------------CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 289999999999 9999875432211100 00 011223568899999
Q ss_pred CCeEEEEEeC--CeeEEeeccccCCccc--CCCCCCC-------------C------------Cc---c-----------
Q 007489 229 HTSLLLVQYS--CRLDILSVRLENNVES--RSSSGGH-------------A------------ST---S----------- 265 (601)
Q Consensus 229 ~~~~~l~~~~--~~i~i~~~~~~~~~~~--~~~~~~~-------------~------------~~---~----------- 265 (601)
|++.++++++ +.+++|++........ .....++ . .+ .
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 9998888764 8999999875432110 0000000 0 00 0
Q ss_pred ---eEEEEEe-----------------------------cCCCCeEEEEEcC----------CCCEEEE-EcCCccEEEE
Q 007489 266 ---LLVQVKS-----------------------------KASRKIICSTISN----------SGMLFAY-SDHVKPSLFE 302 (601)
Q Consensus 266 ---~~~~~~~-----------------------------~~~~~i~~~~~s~----------~g~~l~~-~~~~~v~l~~ 302 (601)
.+..+.. .+...+.++.+.+ +...+++ +.++.+++|+
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~ 380 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML 380 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence 0111110 1123344444433 1223444 5667777777
Q ss_pred eecCCCCcce-----------------EE--E-----------------eeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 303 LKKGKVGQGE-----------------WI--I-----------------NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 303 ~~~~~~~~~~-----------------~~--~-----------------~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
+.. +... .. + ....+.+|...+.+++|+|++++|++|+.|+
T Consensus 381 ~~~---g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg 457 (902)
T 2oaj_A 381 YPS---GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG 457 (902)
T ss_dssp TTT---CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS
T ss_pred CCC---CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC
Confidence 632 1100 00 0 0011334445556677789999999999999
Q ss_pred cEEEEEcCCCcee--eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce--------------
Q 007489 347 RIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-------------- 410 (601)
Q Consensus 347 ~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~-------------- 410 (601)
+|++||+.+++.. ..+... .......+|...|++++||||+++||+|+.||+|+||++.+++
T Consensus 458 tVrlWd~~~g~~~~~~~~~~~--l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 458 SVRIYDASHGDIQDNASFEVN--LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp EEEEEESSCCTTTTTBCEEEE--HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------------
T ss_pred cEEEEECCCccccCCceEEee--chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccc
Confidence 9999999877532 111100 0000001288999999999999999999999999999998763
Q ss_pred -------------------------------EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccch
Q 007489 411 -------------------------------QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWS 459 (601)
Q Consensus 411 -------------------------------~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 459 (601)
+...+.. |...|++++|+| ++ +||+|+.|++|++||+++..+..-
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~- 611 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYM- 611 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEE-
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEE-
Confidence 2334443 567999999999 99 999999999999999987653110
Q ss_pred hcccCCcCcccc-cCCCcEEEEEeC-----CC
Q 007489 460 MQHTFVLPRRYQ-EFPGEVIGLSFS-----PS 485 (601)
Q Consensus 460 ~~~~~~~~~~~~-~~~~~v~~i~~~-----p~ 485 (601)
..+ ..+. +|.+.|++++|+ ||
T Consensus 612 ----~~~-~~~~~gh~~~V~sv~Fs~~~~~~D 638 (902)
T 2oaj_A 612 ----ENI-REISGAQSACVTCIEFVIMEYGDD 638 (902)
T ss_dssp ----EEG-GGTCSSCCCCEEEEEEEEEECTTS
T ss_pred ----eeh-hHhccccccceEEEEEEEEecCCC
Confidence 001 3454 899999999999 87
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=336.16 Aligned_cols=283 Identities=17% Similarity=0.190 Sum_probs=246.4
Q ss_pred CCceEEEEEEEeeC----C-eEEEEcCCCcEEEeeCCccch--hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEe
Q 007489 35 GPELCIWSLLSLRC----G-TLVSADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 107 (601)
Q Consensus 35 ~h~~~V~~v~~s~~----g-~l~s~~~dg~i~vwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~ 107 (601)
+|.+.|++|+|+|+ + .|++|+.|++|+|||+.+++. ...+.+|...|.+++|++++.++++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 89999999999975 4 799999999999999976653 4568899999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
.+++. ...+..|...+.+++|+ |+++ +|++
T Consensus 110 ~~~~~-----------------~~~~~~~~~~~~~~~~s---------pdg~------------------------~l~~ 139 (321)
T 3ow8_A 110 ENGKQ-----------------IKSIDAGPVDAWTLAFS---------PDSQ------------------------YLAT 139 (321)
T ss_dssp TTTEE-----------------EEEEECCTTCCCCEEEC---------TTSS------------------------EEEE
T ss_pred CCCCE-----------------EEEEeCCCccEEEEEEC---------CCCC------------------------EEEE
Confidence 98764 56677888899999998 8887 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
++.|+.|++|++..... .
T Consensus 140 g~~dg~v~i~~~~~~~~--------------------------------------------------------------~ 157 (321)
T 3ow8_A 140 GTHVGKVNIFGVESGKK--------------------------------------------------------------E 157 (321)
T ss_dssp ECTTSEEEEEETTTCSE--------------------------------------------------------------E
T ss_pred EcCCCcEEEEEcCCCce--------------------------------------------------------------e
Confidence 99999999999875210 1
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
.. ...+...+.+++|+|++++|++ +.|+.|++||+.. +..+ ..+.+|...|.+++|+|++++|++++.|+
T Consensus 158 ~~-~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~---~~~~-----~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 158 YS-LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT---GKLL-----HTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp EE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEE-----EEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred EE-ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEE-----EEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 11 1123467999999999999999 6899999999975 4333 44567888999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
.|++||+.+++...++.+ |...|.+++|+|++++|++++.|++|+|||+.++++...+.. |...|.++
T Consensus 229 ~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-h~~~v~~v 296 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTLSG-----------HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-HQDQVWGV 296 (321)
T ss_dssp CEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEE
T ss_pred eEEEEECCCcceeEEEcC-----------CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-CCCcEEEE
Confidence 999999999999888888 899999999999999999999999999999999998877764 55799999
Q ss_pred EecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 427 GFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
+|+| ++.+|++++.|++|++||..
T Consensus 297 ~~s~-~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 297 KYNG-NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECT-TSSEEEEEETTCCEEEEECC
T ss_pred EECC-CCCEEEEEeCCCeEEEEeCC
Confidence 9999 99999999999999999963
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5e-43 Score=397.21 Aligned_cols=406 Identities=15% Similarity=0.151 Sum_probs=327.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||+|+|||+.+++.+.++. +|...|.+++|+|+| +|++++.||.|+|||+.+++++..+.+|..
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 700 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGEKLLDIK--------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE 700 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEec--------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence 48999999999999999999999998 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeC--CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 80 DVNALAAAP--SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 80 ~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
.|.+++|+| ++.++++|+.|+.|++||+.++.. ...+.+|...|.+++|+ |+
T Consensus 701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------------~~~~~~h~~~v~~~~~s---------p~ 754 (1249)
T 3sfz_A 701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------------RNTMFGHTNSVNHCRFS---------PD 754 (1249)
T ss_dssp CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------------EEEECCCSSCEEEEEEC---------SS
T ss_pred cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------------hheecCCCCCEEEEEEe---------cC
Confidence 999999999 556899999999999999998874 66778999999999998 88
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCcc------CCCCCccceeeeeccccCCCe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI------CPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 231 (601)
++ .|++++.|+.|++||+.+......... ...+.......+.+++|+|++
T Consensus 755 ~~------------------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 755 DE------------------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp TT------------------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred CC------------------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 87 999999999999999987543221111 011122223467788999998
Q ss_pred EEEEE-eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCC
Q 007489 232 LLLVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 232 ~~l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
..++. ..+.+.+|++.... .+..+...+...+.+++|+|+++++++ +.++.|++|++.. +
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~---------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---~ 872 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSG---------------LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS---R 872 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCC---------------EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT---T
T ss_pred CEEEEEcCCcEEEEEecCCC---------------ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---C
Confidence 86665 45899999987554 555666688899999999999999999 6899999999975 4
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeee----------------------------
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT---------------------------- 361 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------------- 361 (601)
..+ ..+.+|...|.+++|+|++++|++++.||.|++|++.+......
T Consensus 873 ~~~-----~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 873 LKV-----ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp EEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred cee-----eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 333 45568889999999999999999999999999999753211000
Q ss_pred -eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe
Q 007489 362 -FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~ 440 (601)
+... .......+...+.+++|+|+++++++|+.+|.|++|++.+++....+.. |...|++++|+| ++++|++++
T Consensus 948 ~~~~~---~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~-h~~~v~~l~~s~-dg~~l~s~~ 1022 (1249)
T 3sfz_A 948 LIAGK---TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTA-DGKTLISSS 1022 (1249)
T ss_dssp EEEES---SCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-CSSCCCCEEECS-SSSCEEEEC
T ss_pred EEecC---cceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-CCCceEEEEECC-CCCEEEEEc
Confidence 0000 0000011456799999999999999999999999999999988766653 567899999999 999999999
Q ss_pred CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 441 SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 441 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
.||.|++||+.+++.. .+..|...|.+++|+|+ +..+....+..+.++|+..
T Consensus 1023 ~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~--~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYV------------FLQAHQETVKDFRLLQD--SRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp SSSBEEEEETTTTEEE------------CCBCCSSCEEEEEECSS--SEEEEEESSSEEEEEETTT
T ss_pred CCCEEEEEECCCCceE------------EEecCCCcEEEEEEcCC--CcEEEEECCCcEEEEECCC
Confidence 9999999999988642 24478899999999997 2223333455566777643
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-42 Score=334.28 Aligned_cols=294 Identities=14% Similarity=0.141 Sum_probs=251.7
Q ss_pred CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe
Q 007489 19 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 97 (601)
Q Consensus 19 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 97 (601)
.+...++. +|...|++++|+|++ +|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++|+
T Consensus 45 ~~~~~~l~--------gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 45 MRTRRTLR--------GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred chhheeec--------CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe
Confidence 34556666 899999999999999 999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccccc
Q 007489 98 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 177 (601)
Q Consensus 98 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 177 (601)
.|+.|++|++.+... .......+.+|...|.++.|. +++
T Consensus 117 ~d~~v~iw~~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~---------~~~------------------- 155 (340)
T 1got_B 117 LDNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRFL---------DDN------------------- 155 (340)
T ss_dssp TTCEEEEEETTTCSB-------------SCEEEEEEECCSSCEEEEEEE---------ETT-------------------
T ss_pred CCCeEEEEECccCCC-------------cceeEEEecCCCccEEEEEEC---------CCC-------------------
Confidence 999999999987531 112245677899999999997 554
Q ss_pred ccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCC
Q 007489 178 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS 257 (601)
Q Consensus 178 ~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~ 257 (601)
.+++++.|+.|++||+.+..
T Consensus 156 ------~l~s~s~d~~i~~wd~~~~~------------------------------------------------------ 175 (340)
T 1got_B 156 ------QIVTSSGDTTCALWDIETGQ------------------------------------------------------ 175 (340)
T ss_dssp ------EEEEEETTSCEEEEETTTTE------------------------------------------------------
T ss_pred ------cEEEEECCCcEEEEECCCCc------------------------------------------------------
Confidence 68999999999999987521
Q ss_pred CCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC
Q 007489 258 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 336 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~ 336 (601)
.......|...|.+++|+|+++++++ +.|+.|++||+.. +... ..+.+|...|.+++|+|++
T Consensus 176 ---------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~---~~~~-----~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 176 ---------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCR-----QTFTGHESDINAICFFPNG 238 (340)
T ss_dssp ---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CSEE-----EEECCCSSCEEEEEECTTS
T ss_pred ---------EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC---CeeE-----EEEcCCcCCEEEEEEcCCC
Confidence 11112245678999999999999998 6899999999975 4333 4466788899999999999
Q ss_pred CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 337 SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
++|++|+.||+|++||+.+++.+..+.... +...|++++|+|++++|++|+.||.|++||+.+++....+.
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQELMTYSHDN---------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCTT---------CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEccCC---------cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence 999999999999999999888877765321 45679999999999999999999999999999998877776
Q ss_pred ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 417 RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 417 ~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
. |...|.+++|+| ++.+|++++.|+.|+|||
T Consensus 310 ~-h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 G-HDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp C-CSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred c-CCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 5 557999999999 999999999999999996
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-43 Score=347.07 Aligned_cols=326 Identities=15% Similarity=0.180 Sum_probs=264.3
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEe
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA 87 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s 87 (601)
..+..|+..+..+.+++. +|.+.|++++|+|++ +|++|+.||+|+|||+.+++.+..+..|...|.+++|+
T Consensus 46 ~~~~~~~~~~~~~~~~l~--------gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s 117 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQ--------GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117 (380)
T ss_dssp GGCCCCCCCCCEEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEEC
T ss_pred ccccccccceeEEeeccc--------ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEEC
Confidence 355678888888888888 999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCC
Q 007489 88 PSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 167 (601)
Q Consensus 88 ~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~ 167 (601)
|++++|++|+.|+.|++|++....... ........+.+|...|.++.|. |++.
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~----------~~~~~~~~~~gh~~~v~~~~~~---------~~~~-------- 170 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRD----------GNMPVSRVLTGHKGYASSCQYV---------PDQE-------- 170 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCC----------CSSTTCCBCCCCSSCCCCCBCC---------SSSS--------
T ss_pred CCCCEEEEeeCCCcEEEEECCCCcccc----------CCccceeeccCCCcceEEEEEe---------cCCC--------
Confidence 999999999999999999997643100 0011134577899999999987 6543
Q ss_pred ccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecc
Q 007489 168 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 247 (601)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~ 247 (601)
..|++|+.|++|++||+.+..... .+...
T Consensus 171 ---------------~~l~s~s~D~~i~~wd~~~~~~~~------------------------------------~~~~~ 199 (380)
T 3iz6_a 171 ---------------TRLITGSGDQTCVLWDVTTGQRIS------------------------------------IFGSE 199 (380)
T ss_dssp ---------------SCEEEECTTSCEEEECTTTCCEEE------------------------------------EECCC
T ss_pred ---------------CEEEEECCCCcEEEEEcCCCcEEE------------------------------------Eeecc
Confidence 379999999999999988632110 00000
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCcc
Q 007489 248 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ 325 (601)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (601)
....|...|.++++++ ++.+|++ +.|+.|++||++. ....+ ..+.+|..
T Consensus 200 ----------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~--~~~~~-----~~~~~h~~ 250 (380)
T 3iz6_a 200 ----------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI--TSRAV-----RTYHGHEG 250 (380)
T ss_dssp ----------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT--TCCCC-----EEECCCSS
T ss_pred ----------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC--CCcce-----EEECCcCC
Confidence 0013457799999977 7888888 7899999999974 12222 44677889
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
.|.+++|+|++++|++|+.||+|++||+.+++.+..+..+... ...+...|++++|+|+|++|++|+.||.|++||
T Consensus 251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR----NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS----SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc----cccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 9999999999999999999999999999999988877653210 011334589999999999999999999999999
Q ss_pred cCCceEEEEee---ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 406 LEIQRQHWFIS---RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 406 ~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
+..++....+. ..|...|++++|+| ++.+|++|+.|++|++|++...+
T Consensus 327 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 327 TLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 99888766653 34667899999999 99999999999999999998754
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-42 Score=327.39 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=248.6
Q ss_pred ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee
Q 007489 20 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
+..+++. +|...|++++|+|++ .|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++|+.
T Consensus 4 ~~~~~~~--------~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 4 DIKKTFS--------NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp CCEEEEE--------EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred eeEEeec--------CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence 3456676 899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
|++|++||+.+++. ...+.+|...|.+++|+ |+++
T Consensus 76 d~~i~vwd~~~~~~-----------------~~~~~~h~~~v~~~~~~---------~~~~------------------- 110 (304)
T 2ynn_A 76 DFRIRVFNYNTGEK-----------------VVDFEAHPDYIRSIAVH---------PTKP------------------- 110 (304)
T ss_dssp TSEEEEEETTTCCE-----------------EEEEECCSSCEEEEEEC---------SSSS-------------------
T ss_pred CCEEEEEECCCCcE-----------------EEEEeCCCCcEEEEEEc---------CCCC-------------------
Confidence 99999999998874 67788999999999998 8886
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
+|++|+.|++|++||+++..
T Consensus 111 -----~l~sgs~D~~v~lWd~~~~~------------------------------------------------------- 130 (304)
T 2ynn_A 111 -----YVLSGSDDLTVKLWNWENNW------------------------------------------------------- 130 (304)
T ss_dssp -----EEEEEETTSCEEEEEGGGTT-------------------------------------------------------
T ss_pred -----EEEEECCCCeEEEEECCCCc-------------------------------------------------------
Confidence 99999999999999987521
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc--
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-- 334 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-- 334 (601)
.+......|...|.+++|+| ++.+|++ +.|+.|++||+.. ......+ ...+...+..+.|+|
T Consensus 131 -------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~---~~~~~~~----~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 131 -------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---STPNFTL----TTGQERGVNYVDYYPLP 196 (304)
T ss_dssp -------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC---SSCSEEE----ECCCTTCEEEEEECCST
T ss_pred -------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC---CCcccee----ccCCcCcEEEEEEEEcC
Confidence 12223335668899999999 6788888 7999999999975 2222111 234556788899987
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEE
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~ 414 (601)
++.+|++++.|++|++||+.+++++.++.+ |...|.+++|+|++++|++|+.||.|+|||+.+++....
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-----------h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKSCVATLEG-----------HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCEEEEEcCCCeEEEEeCCCCccceeeCC-----------CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 778999999999999999999999999998 899999999999999999999999999999999998877
Q ss_pred eeccCCCceeEEEecCCCCC--EEEEEeCCCeEEEEEcCCC
Q 007489 415 ISRLEGASVTAAGFPPQNNN--VLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 415 ~~~~~~~~v~~l~~~p~~~~--~l~~~~~dg~v~vwd~~~~ 453 (601)
+.. +...+.+++|+| ++. ++++++ |..+.+|++...
T Consensus 266 ~~~-~~~~~~~~~~~~-~~~~~~~asg~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 266 LNV-GLERSWCIATHP-TGRKNYIASGF-DNGFTVLSLGND 303 (304)
T ss_dssp ECC-SSSSEEEEEECT-TCGGGCEEEEE-TTEEEEEECC--
T ss_pred ccC-CCccEEEEEECC-CCCceEEEEec-CCceEEEEeccC
Confidence 764 446899999999 654 466665 455788888653
No 13
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.2e-42 Score=359.26 Aligned_cols=407 Identities=11% Similarity=0.176 Sum_probs=301.7
Q ss_pred EEeeecCCcEEEEECCCC----ceEEEEEeccCCCCCCCceE-EEEEEEee--CC-eEEEEcCCCcEEEeeCCcc-----
Q 007489 2 LYSGSSDGYIRSWDAKLG----YEIYRITVGLGGLGSGPELC-IWSLLSLR--CG-TLVSADSTGSVQFWDSRHG----- 68 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~h~~~-V~~v~~s~--~g-~l~s~~~dg~i~vwd~~~~----- 68 (601)
||+++ ++.|+|||+.++ +.+..+. +|... |++++|+| ++ +|++++.||.|++||+.++
T Consensus 33 l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--------~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 33 IAYPC-GKSAFVRCLDDGDSKVPPVVQFT--------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 103 (615)
T ss_dssp EEEEE-TTEEEEEECCSSCCSSCSEEEEC--------TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred EEEec-CCeEEEEECCCCCCccccceEEe--------cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc
Confidence 66776 889999999999 8899998 89999 99999999 99 9999999999999999755
Q ss_pred ---chhhhccccccceEEEEEeCCCCEEEEEeeC----CeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccccee
Q 007489 69 ---TLLQAHSFHKGDVNALAAAPSHNRVFSTGSD----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR 141 (601)
Q Consensus 69 ---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 141 (601)
+.+..+..|...|.+++|+|++++|++++.+ +.|.+|+ .+.. ...+..|...|.
T Consensus 104 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~-----------------~~~~~~~~~~v~ 164 (615)
T 1pgu_A 104 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS-----------------LGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE-----------------EEECCSCSSCEE
T ss_pred ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCc-----------------ceeeecCCccEE
Confidence 6777888899999999999999999999988 6899998 3332 567788999999
Q ss_pred EEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcccee-
Q 007489 142 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH- 220 (601)
Q Consensus 142 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (601)
+++|+ |+++ ..+++++.|+.|++||..+.+...... .+..
T Consensus 165 ~~~~~---------~~~~-----------------------~~l~~~~~d~~v~vwd~~~~~~~~~~~-------~~~~~ 205 (615)
T 1pgu_A 165 ACHLK---------QSRP-----------------------MRSMTVGDDGSVVFYQGPPFKFSASDR-------THHKQ 205 (615)
T ss_dssp EEEEC---------SSSS-----------------------CEEEEEETTTEEEEEETTTBEEEEEEC-------SSSCT
T ss_pred EEEEC---------CCCC-----------------------cEEEEEeCCCcEEEEeCCCcceeeeec-------ccCCC
Confidence 99998 7764 379999999999999987654322111 1113
Q ss_pred --eeeccccCCC-eEEEEEe--CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe---cCCCCeEEEEEcCCCCEEEE
Q 007489 221 --LVHNTIFSHT-SLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS---KASRKIICSTISNSGMLFAY 292 (601)
Q Consensus 221 --~~~~~~~~~~-~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~ 292 (601)
.+.+++|+|+ +.+++++ ++.+.+|++.... .+..+.. .|...|.+++|+ ++++|++
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---------------FLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC---------------EEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC---------------EeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 6788999999 8877654 4899999987543 3444434 678899999999 9999988
Q ss_pred -EcCCccEEEEeecCCC---------------------------------CcceEEEee----ecCCcC-----------
Q 007489 293 -SDHVKPSLFELKKGKV---------------------------------GQGEWIINK----RQLPRK----------- 323 (601)
Q Consensus 293 -~~~~~v~l~~~~~~~~---------------------------------~~~~~~~~~----~~~~~~----------- 323 (601)
+.++.+++|++..... ...+|++.. ..+..|
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 349 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence 6889999999874110 001111100 112223
Q ss_pred ----------------------ccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-------------------------
Q 007489 324 ----------------------LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS------------------------- 356 (601)
Q Consensus 324 ----------------------~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~------------------------- 356 (601)
...|.+++| +++.+|++++.|+.|++||+.++
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 333444444 33555556666665555554321
Q ss_pred ---------ceeeeeccCc------------------cc----------cc--ccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 357 ---------ELLHTFTPCR------------------EE----------HD--REIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 357 ---------~~~~~~~~~~------------------~~----------~~--~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
+.+..+.... .. .. .....|...|++++|+|++++|++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 1111110000 00 00 233458899999999999999999999
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCC---------CCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCc
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ---------NNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR 468 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~---------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 468 (601)
||.|++||+.+++....+...|...|++++|+|. ++++|++++.|+.|++||+.++.. ...
T Consensus 509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~ 578 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK----------IIK 578 (615)
T ss_dssp TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC----------CEE
T ss_pred CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce----------ech
Confidence 9999999999999887766547789999999993 678999999999999999998631 244
Q ss_pred ccccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeCC
Q 007489 469 RYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDFG 505 (601)
Q Consensus 469 ~~~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~~ 505 (601)
.+.+|...|.+++|+|+ +. ++.. .+..+.++++.
T Consensus 579 ~~~~h~~~v~~l~~s~~--~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETP--ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ETTSSTTCEEEEEEEET--TE-EEEEETTSCEEEEEEC
T ss_pred hhhcCccceEEEEEcCC--CC-eEEecCCceEEEEeee
Confidence 67789999999999999 33 4444 45567777764
No 14
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-42 Score=392.60 Aligned_cols=404 Identities=15% Similarity=0.173 Sum_probs=320.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhc-----
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH----- 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~----- 74 (601)
+|++|+.||.|++||+.+++++..+. +|...|++++|+|++ .|++++.||.|++||+.+++....+
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~~~~--------~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 786 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRNTMF--------GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEEEEC--------CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred EEEEEeCCCeEEEEECCCcchhheec--------CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccc
Confidence 37899999999999999999999998 899999999999999 9999999999999999766433221
Q ss_pred --------------------------------------------------cccccceEEEEEeCCCCEEEEEeeCCeEEE
Q 007489 75 --------------------------------------------------SFHKGDVNALAAAPSHNRVFSTGSDGQVIL 104 (601)
Q Consensus 75 --------------------------------------------------~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 104 (601)
.+|...|.+++|+|+++++++++.|+.|++
T Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866 (1249)
T ss_dssp C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence 167788999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCE
Q 007489 105 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 184 (601)
Q Consensus 105 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (601)
|++.++.. ...+.+|...|.+++|+ |+++ .
T Consensus 867 wd~~~~~~-----------------~~~~~~h~~~v~~v~~s---------pdg~------------------------~ 896 (1249)
T 3sfz_A 867 WNIDSRLK-----------------VADCRGHLSWVHGVMFS---------PDGS------------------------S 896 (1249)
T ss_dssp EETTTTEE-----------------EEEECCCSSCEEEEEEC---------TTSS------------------------E
T ss_pred EEcCCCce-----------------eeecCCCccceEEEEEC---------CCCC------------------------E
Confidence 99988764 66778999999999998 8887 9
Q ss_pred EEEecCCCeEEEEeccccCCcCCCccC------------------------------CCCCccceeeeeccccCCCeEEE
Q 007489 185 LISAGDDTKLFAYCANEFTKFSPHEIC------------------------------PAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 185 l~s~~~d~~v~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|++++.|+.|++|++............ ..........+.+++++|++.++
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 999999999999997642211100000 00000112346788899999877
Q ss_pred EEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 235 VQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 235 ~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
++++ +.+.+|++.... .......|...|.+++|+|+|+++++ +.|+.|++|++.. +..
T Consensus 977 ~~g~~~g~i~i~d~~~~~----------------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---~~~ 1037 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNR----------------VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---GDY 1037 (1249)
T ss_dssp EEEETTSCCEEEETTTTS----------------CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT---TEE
T ss_pred EEEcCCCCEEEEEcCCCc----------------eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC---Cce
Confidence 7654 889999987543 22233466788999999999999998 6899999999975 322
Q ss_pred eEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
.....|...+.+++|+|++ .+++++.||.|++||+.+++....+.+ |...|++++|+|++++
T Consensus 1038 ------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~ 1099 (1249)
T 3sfz_A 1038 ------VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTC-----------HQGTVLSCAISSDATK 1099 (1249)
T ss_dssp ------ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEEC-----------CSSCCCCEEECSSSSS
T ss_pred ------EEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcc-----------cCCcEEEEEECCCCCE
Confidence 2345778899999999976 678899999999999999999999988 8899999999999999
Q ss_pred EEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccc
Q 007489 392 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ 471 (601)
Q Consensus 392 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 471 (601)
|++++.||.|++||+.+++....+.. |...|++++|+| ++++|++++.||.|++||+.+++..... .+........
T Consensus 1100 l~s~s~d~~v~iwd~~~~~~~~~l~~-h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1100 FSSTSADKTAKIWSFDLLSPLHELKG-HNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSC--APISVEEGTA 1175 (1249)
T ss_dssp CEEECCSSCCCEECSSSSSCSBCCCC-CSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCCCCCC--CCCC------
T ss_pred EEEEcCCCcEEEEECCCcceeeeecc-CCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEe--cccccccccc
Confidence 99999999999999999887655553 557899999999 9999999999999999999988742210 0111122345
Q ss_pred cCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 472 EFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 472 ~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
+|.+.|.+++|+|+ +..+... ...+.++|+..
T Consensus 1176 ~~~~~v~~l~fs~d--g~~l~s~-~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPD--SKTLVSA-GGYLKWWNVAT 1207 (1249)
T ss_dssp -CCSCCCEEEECTT--SSCEEEE-SSSEEEBCSSS
T ss_pred ccCceEEEEEECCC--CCEEEEC-CCeEEEEECCC
Confidence 78899999999998 4444444 46778888754
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.1e-42 Score=332.20 Aligned_cols=290 Identities=14% Similarity=0.168 Sum_probs=228.8
Q ss_pred CCceEEEEEEEeeCC-eEEEEcC------CCcEEEeeCCccchhhhc----cccccceEEEEEeCCCCEEEEEeeCCeEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADS------TGSVQFWDSRHGTLLQAH----SFHKGDVNALAAAPSHNRVFSTGSDGQVI 103 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~------dg~i~vwd~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 103 (601)
.|+..|++|+|+||| +|++|+. |+.|++|+..++.....+ .+|...|.+++|+|++. +++++.||+|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 799999999999999 8999987 788999999877654433 46889999999999976 55677899999
Q ss_pred EEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCC
Q 007489 104 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 183 (601)
Q Consensus 104 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (601)
+||+.+++..... .....+|...|.+++|+ |+++
T Consensus 119 lWd~~~~~~~~~~-------------~~~~~~h~~~V~~v~~s---------pdg~------------------------ 152 (357)
T 4g56_B 119 LWEILEKESLLVN-------------KFAKYEHDDIVKTLSVF---------SDGT------------------------ 152 (357)
T ss_dssp EC--------CCC-------------CEEECCCSSCEEEEEEC---------SSSS------------------------
T ss_pred EeeccccceeEEE-------------eeccCCCCCCEEEEEEC---------CCCC------------------------
Confidence 9999887641111 12335789999999998 8887
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
+|++|+.|+.|++||+.+..
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~------------------------------------------------------------ 172 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKA------------------------------------------------------------ 172 (357)
T ss_dssp EEEEEETTSCEEEEETTTTE------------------------------------------------------------
T ss_pred EEEEEeCCCeEEEEECCCCc------------------------------------------------------------
Confidence 99999999999999987521
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEE
Q 007489 264 TSLLVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLI 340 (601)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~ 340 (601)
.......|...|.+++|++++. ++++ +.|+.|++||++. +... .......+...+.+++|+|++ .+|+
T Consensus 173 ---~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~---~~~~---~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 173 ---VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK---PKPA---TRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp ---EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS---SSCB---CBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred ---EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC---Ccee---eeeeeccccccccchhhhhcccceEE
Confidence 1111224567899999999875 5555 7899999999986 2221 113344566789999999974 6789
Q ss_pred EEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCceEEEEeeccC
Q 007489 341 IAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRLE 419 (601)
Q Consensus 341 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~ 419 (601)
+|+.|+.|++||+.+++.+.++.. |...|++++|+|++ ++||+|+.||+|+|||+++++....+ .|
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H 310 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAV-----------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH 310 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECC-----------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC
T ss_pred EeecccceeEEECCCCcEeEEEec-----------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC
Confidence 999999999999999999999988 88999999999987 58999999999999999999887554 36
Q ss_pred CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 420 GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 420 ~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
...|++++|+|.++.+|++++.||+|++|++.+.
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6799999999856889999999999999999764
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=328.90 Aligned_cols=303 Identities=15% Similarity=0.194 Sum_probs=242.4
Q ss_pred ceEEEEEeccCCCCCCCce-EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh---hccccccceEEEEEeCCCCEEE
Q 007489 20 YEIYRITVGLGGLGSGPEL-CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ---AHSFHKGDVNALAAAPSHNRVF 94 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~~h~~-~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~s~~~~~l~ 94 (601)
+++.++. +|.. .|++++|+|+| +|++|+.|+.|+|||+.+++... ...+|...|.+++|+|++++|+
T Consensus 6 ~~~~~~~--------~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 6 VLLGRVP--------AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp EEEEEEC--------CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred EEeeeec--------CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence 4556666 7877 99999999999 99999999999999998775332 2368999999999999999999
Q ss_pred EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccc
Q 007489 95 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSY 174 (601)
Q Consensus 95 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 174 (601)
+|+.|++|++|++..+. +.+...+.+|...|.+++|+ |+++
T Consensus 78 s~s~D~~v~iw~~~~~~---------------~~~~~~~~~h~~~v~~v~~s---------p~~~--------------- 118 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD---------------FECVTTLEGHENEVKSVAWA---------PSGN--------------- 118 (345)
T ss_dssp EEETTSCEEEEEECCC----------------EEEEEEECCCSSCEEEEEEC---------TTSS---------------
T ss_pred EEECCCcEEEEEccCCC---------------eEEEEEccCCCCCceEEEEe---------CCCC---------------
Confidence 99999999999988753 22356778999999999998 8887
Q ss_pred cccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCccc
Q 007489 175 HKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES 254 (601)
Q Consensus 175 ~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~ 254 (601)
+|++|+.|+.|++||+......
T Consensus 119 ---------~l~s~s~D~~v~iwd~~~~~~~------------------------------------------------- 140 (345)
T 3fm0_A 119 ---------LLATCSRDKSVWVWEVDEEDEY------------------------------------------------- 140 (345)
T ss_dssp ---------EEEEEETTSCEEEEEECTTSCE-------------------------------------------------
T ss_pred ---------EEEEEECCCeEEEEECCCCCCe-------------------------------------------------
Confidence 9999999999999998752100
Q ss_pred CCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc
Q 007489 255 RSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 333 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 333 (601)
........|...|.+++|+|++++|++ +.|+.|++|++.. +.. .....+.+|...|.+++|+
T Consensus 141 -----------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~---~~~---~~~~~~~~h~~~v~~l~~s 203 (345)
T 3fm0_A 141 -----------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE---DDW---VCCATLEGHESTVWSLAFD 203 (345)
T ss_dssp -----------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET---TEE---EEEEEECCCSSCEEEEEEC
T ss_pred -----------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC---CCE---EEEEEecCCCCceEEEEEC
Confidence 111222345678999999999999998 6899999999985 221 1124567889999999999
Q ss_pred cCCCeEEEEecCCcEEEEEcCCCc---------------eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC
Q 007489 334 YDSSQLIIAGHDRRIYVVDVSSSE---------------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 398 (601)
Q Consensus 334 ~d~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d 398 (601)
|++++|++++.|++|++||..... ++.++.+. |...|.+++|+|++.+|++++.|
T Consensus 204 p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~v~~~~~~~~l~s~~~d 273 (345)
T 3fm0_A 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF----------HSRTIYDIAWCQLTGALATACGD 273 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS----------CSSCEEEEEECTTTCCEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC----------CCCcEEEEEEecCCCEEEEEeCC
Confidence 999999999999999999963221 22233322 78899999999999999999999
Q ss_pred CeEEEEEcCCce--------EEEEeeccCCCceeEEEecCCCC-CEEEEEeCCCeEEEEEcCCCCc
Q 007489 399 GDVYIFNLEIQR--------QHWFISRLEGASVTAAGFPPQNN-NVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 399 g~i~iwd~~~~~--------~~~~~~~~~~~~v~~l~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.|++|+..... ........|...|++++|+| ++ .+|++++.||+|++|++.+++.
T Consensus 274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP-KEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS-SSTTEEEEEETTSCEEEEEECC---
T ss_pred CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC-CCceEEEEcCCCCcEEEEEecCCCC
Confidence 999999987542 11122234668899999999 76 5999999999999999988763
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.4e-42 Score=325.91 Aligned_cols=283 Identities=15% Similarity=0.179 Sum_probs=239.8
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCc-----cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEe
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-----GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 107 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~-----~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~ 107 (601)
+|.+.|++++|+|++ .|++|+.|++|++||+.. +.++..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 899999999999965 899999999999999864 3456788999999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
.+++. ...+.+|...|.+++|+ |++. +|++
T Consensus 95 ~~~~~-----------------~~~~~~h~~~v~~~~~~---------~~~~------------------------~l~s 124 (319)
T 3frx_A 95 ATGET-----------------YQRFVGHKSDVMSVDID---------KKAS------------------------MIIS 124 (319)
T ss_dssp TTTEE-----------------EEEEECCSSCEEEEEEC---------TTSC------------------------EEEE
T ss_pred CCCCe-----------------eEEEccCCCcEEEEEEc---------CCCC------------------------EEEE
Confidence 98874 67788999999999998 8876 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
|+.|+.|++||++.. .
T Consensus 125 ~s~D~~i~vwd~~~~----------------------------------------------------------------~ 140 (319)
T 3frx_A 125 GSRDKTIKVWTIKGQ----------------------------------------------------------------C 140 (319)
T ss_dssp EETTSCEEEEETTSC----------------------------------------------------------------E
T ss_pred EeCCCeEEEEECCCC----------------------------------------------------------------e
Confidence 999999999998631 0
Q ss_pred EEEEecCCCCeEEEEEcCC------CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEE
Q 007489 268 VQVKSKASRKIICSTISNS------GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI 340 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~------g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~ 340 (601)
......|...+.+++++|. +..+++ +.|+.|++|++.. .... ..+.+|...|.+++|+|++++|+
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~-----~~~~~h~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ---FQIE-----ADFIGHNSNINTLTASPDGTLIA 212 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT---TEEE-----EEECCCCSCEEEEEECTTSSEEE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc---chhh-----eeecCCCCcEEEEEEcCCCCEEE
Confidence 0111234577888888885 446777 7999999999975 3222 44667889999999999999999
Q ss_pred EEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc--
Q 007489 341 IAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-- 418 (601)
Q Consensus 341 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~-- 418 (601)
+++.||.|++||+.+++.+.++.. ...|.+++|+|++.+|++++.++ +++|+++.......+...
T Consensus 213 s~~~dg~i~iwd~~~~~~~~~~~~------------~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~ 279 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKKAMYTLSA------------QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFA 279 (319)
T ss_dssp EEETTCEEEEEETTTTEEEEEEEC------------CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCT
T ss_pred EEeCCCeEEEEECCCCcEEEEecC------------CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCcccc
Confidence 999999999999999998888874 46799999999999999988665 999999988766554321
Q ss_pred -----CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 419 -----EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 419 -----~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+...+.+++|+| ++++|++++.|+.|++||+.++
T Consensus 280 ~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEEeec
Confidence 235689999999 9999999999999999999764
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.4e-41 Score=325.98 Aligned_cols=296 Identities=15% Similarity=0.132 Sum_probs=249.5
Q ss_pred ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee
Q 007489 20 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
+...++. +|...|++++|+|++ +|++|+.||+|+|||..+++....+..|...|.+++|+|+|++|++|+.
T Consensus 55 ~~~~~l~--------gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 55 KTRRTLK--------GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp CEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred EEEEEec--------CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 4566777 999999999999999 9999999999999999999988889999999999999999999999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
|+.+++|++........ ......+..|...|.+++|+ |+++
T Consensus 127 d~~i~v~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~---------~~~~------------------- 167 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENM-----------AAKKKSVAMHTNYLSACSFT---------NSDM------------------- 167 (354)
T ss_dssp TSEEEEEECCCCTTCCS-----------GGGCEEEEECSSCEEEEEEC---------SSSS-------------------
T ss_pred CCCEEEEEEeccccccc-----------cccceeeeccCCcEEEEEEe---------CCCC-------------------
Confidence 99999999875431000 00123456799999999998 7776
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
.|++++.|++|++||+++.+
T Consensus 168 -----~l~t~s~D~~v~lwd~~~~~------------------------------------------------------- 187 (354)
T 2pbi_B 168 -----QILTASGDGTCALWDVESGQ------------------------------------------------------- 187 (354)
T ss_dssp -----EEEEEETTSEEEEEETTTCC-------------------------------------------------------
T ss_pred -----EEEEEeCCCcEEEEeCCCCe-------------------------------------------------------
Confidence 99999999999999987521
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcC--CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISN--SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD 335 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d 335 (601)
.......|...|.+++++| ++++|++ +.|+.|++||++. +..+ ..+..|...|.+++|+|+
T Consensus 188 --------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~---~~~~-----~~~~~h~~~v~~v~~~p~ 251 (354)
T 2pbi_B 188 --------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS---GQCV-----QAFETHESDVNSVRYYPS 251 (354)
T ss_dssp --------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT---CCEE-----EEECCCSSCEEEEEECTT
T ss_pred --------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC---CcEE-----EEecCCCCCeEEEEEeCC
Confidence 1112224567899999987 5678888 7899999999986 4443 445678889999999999
Q ss_pred CCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEe
Q 007489 336 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 336 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 415 (601)
+.+|++++.|++|++||+..++.+..+.... +...+.+++|+|++++|++|+.|+.|+|||+.+++....+
T Consensus 252 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~---------~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 252 GDAFASGSDDATCRLYDLRADREVAIYSKES---------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCTT---------CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 9999999999999999999887776665422 4557899999999999999999999999999998887666
Q ss_pred eccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.. |...|++++|+| ++++|++++.|++|++|+
T Consensus 323 ~~-h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 FG-HENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CC-CSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred EC-CCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 64 567999999999 999999999999999995
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-42 Score=340.05 Aligned_cols=266 Identities=14% Similarity=0.227 Sum_probs=233.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||+|+|||+.+++.+..+. +|...|++++|+|++ .|++|+.|++|++||+.+++++..+.+|..
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~--------~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 193 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLK--------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEe--------ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Confidence 48999999999999999999999998 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++|+|++++|++|+.|++|++||+.++.+ ...+.+|...|.+++++ |+++
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------------~~~~~~h~~~v~~~~~~---------~~g~ 247 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------------VKTFTGHREWVRMVRPN---------QDGT 247 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------EEEEECCSSCEEEEEEC---------TTSS
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------EEEEeCCCccEEEEEEC---------CCCC
Confidence 999999999999999999999999999998774 67788999999999998 8886
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
+|++|+.|+.|++||+.+.....
T Consensus 248 ------------------------~l~s~s~D~~v~vwd~~~~~~~~--------------------------------- 270 (410)
T 1vyh_C 248 ------------------------LIASCSNDQTVRVWVVATKECKA--------------------------------- 270 (410)
T ss_dssp ------------------------EEEEEETTSCEEEEETTTCCEEE---------------------------------
T ss_pred ------------------------EEEEEcCCCeEEEEECCCCceee---------------------------------
Confidence 99999999999999987632110
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--------------------CCEEEE-EcCCcc
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--------------------GMLFAY-SDHVKP 298 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------g~~l~~-~~~~~v 298 (601)
....|...|.+++|+|+ |.+|++ +.|+.|
T Consensus 271 ------------------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 271 ------------------------------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp ------------------------------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred ------------------------------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 01122344555555553 678888 789999
Q ss_pred EEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCC
Q 007489 299 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 378 (601)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (601)
++||+.. +..+ ..+.+|...|.+++|+|++++|++|+.||.|++||+.+++++.++.+ |..
T Consensus 321 ~iwd~~~---~~~~-----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-----------h~~ 381 (410)
T 1vyh_C 321 KMWDVST---GMCL-----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-----------HEH 381 (410)
T ss_dssp EEEETTT---TEEE-----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-----------CSS
T ss_pred EEEECCC---CceE-----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC-----------CCC
Confidence 9999985 4443 34557888999999999999999999999999999999999999988 899
Q ss_pred CeeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 379 PITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 379 ~i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
.|++++|+|++.+|++|+.||.|+||++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999999999986
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=323.75 Aligned_cols=269 Identities=16% Similarity=0.216 Sum_probs=235.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||||+.|++|+|||+.+++....... .+|...|.+++|++++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l------~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~ 123 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSL------EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV 123 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeee------ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc
Confidence 389999999999999987765443322 1899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.+.+++|+|++++|++|+.|+.|++|++.++.. ...+..|...|.+++|+ |+++
T Consensus 124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-----------------~~~~~~~~~~v~~~~~s---------pdg~ 177 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----------------EYSLDTRGKFILSIAYS---------PDGK 177 (321)
T ss_dssp CCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-----------------EEEEECSSSCEEEEEEC---------TTSS
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-----------------eEEecCCCceEEEEEEC---------CCCC
Confidence 999999999999999999999999999988764 45667788899999998 8887
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
+|++|+.|+.|++||+.+.+
T Consensus 178 ------------------------~lasg~~dg~i~iwd~~~~~------------------------------------ 197 (321)
T 3ow8_A 178 ------------------------YLASGAIDGIINIFDIATGK------------------------------------ 197 (321)
T ss_dssp ------------------------EEEEEETTSCEEEEETTTTE------------------------------------
T ss_pred ------------------------EEEEEcCCCeEEEEECCCCc------------------------------------
Confidence 99999999999999987521
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.......|...|.+++|+|++++|++ +.|+.|++|++.. +... .
T Consensus 198 ---------------------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~---~~~~-----~ 242 (321)
T 3ow8_A 198 ---------------------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH---ANLA-----G 242 (321)
T ss_dssp ---------------------------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---CCEE-----E
T ss_pred ---------------------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---ccee-----E
Confidence 11112234577999999999999999 6899999999975 3332 4
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 398 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d 398 (601)
.+.+|...|.+++|+|++++|++++.|++|++||+.+++++.++.. |...|.+++|+|++++|++++.|
T Consensus 243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-----------HQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-----------CSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-----------CCCcEEEEEECCCCCEEEEEeCC
Confidence 5678889999999999999999999999999999999999999988 89999999999999999999999
Q ss_pred CeEEEEEcC
Q 007489 399 GDVYIFNLE 407 (601)
Q Consensus 399 g~i~iwd~~ 407 (601)
|.|+|||..
T Consensus 312 ~~i~vwd~p 320 (321)
T 3ow8_A 312 QEIHIYDCP 320 (321)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999963
No 21
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=320.10 Aligned_cols=290 Identities=14% Similarity=0.121 Sum_probs=224.8
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc-----------chhhhccccccceEEEEEeCCCCEEEEEeeCCeE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-----------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 102 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 102 (601)
.|+..|.+++|+||| +|++++ |+++++||.... ........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 688889999999999 555555 778888874321 1111122366789999999985 68899999999
Q ss_pred EEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCC
Q 007489 103 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 182 (601)
Q Consensus 103 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (601)
++||+.+++.. ......+.+|...|.+++|+ |+++
T Consensus 106 ~lWd~~~~~~~-------------~~~~~~~~~H~~~V~~v~~s---------pdg~----------------------- 140 (344)
T 4gqb_B 106 ELWELDENETL-------------IVSKFCKYEHDDIVSTVSVL---------SSGT----------------------- 140 (344)
T ss_dssp EEEEECTTSSC-------------EEEEEEEECCSSCEEEEEEC---------TTSS-----------------------
T ss_pred EEEeccCCCce-------------eEeeccccCCCCCEEEEEEC---------CCCC-----------------------
Confidence 99999987641 11123456899999999998 8887
Q ss_pred CEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCC
Q 007489 183 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 262 (601)
Q Consensus 183 ~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 262 (601)
+|++|+.|+.|++||+.+..
T Consensus 141 -~l~sgs~d~~i~iwd~~~~~----------------------------------------------------------- 160 (344)
T 4gqb_B 141 -QAVSGSKDICIKVWDLAQQV----------------------------------------------------------- 160 (344)
T ss_dssp -EEEEEETTSCEEEEETTTTE-----------------------------------------------------------
T ss_pred -EEEEEeCCCeEEEEECCCCc-----------------------------------------------------------
Confidence 99999999999999987521
Q ss_pred CcceEEEEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC-CCeE
Q 007489 263 STSLLVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQL 339 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d-~~~l 339 (601)
.......|...|.+++|+|++. +|++ +.|+.|++||++. +... .......+...+.+++|+|+ +++|
T Consensus 161 ----~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~---~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 161 ----VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC---PKPA---SQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp ----EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS---SSCE---EECC----CCCEEEEEECSSCTTEE
T ss_pred ----EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc---ccee---eeeecceeeccceeeeecCCCCcce
Confidence 1122234678899999999984 6666 6899999999986 3332 11223344557899999995 5678
Q ss_pred EEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 340 IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
++|+.||.|++||+.+++++.++.+ |...|++++|+|++ ++||+|+.|++|+|||+.+++... +. .
T Consensus 231 ~sg~~dg~v~~wd~~~~~~~~~~~~-----------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-~ 297 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSCVLSSAV-----------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-A 297 (344)
T ss_dssp EEEETTSEEEEEESCC--CCEEEEC-----------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-C
T ss_pred EEeccCCcEEEEECCCCcEEEEEcC-----------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-C
Confidence 9999999999999999999999998 89999999999998 589999999999999999988753 33 4
Q ss_pred CCCceeEEEecCCCCC-EEEEEeCCCeEEEEEcCCCCc
Q 007489 419 EGASVTAAGFPPQNNN-VLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~ 455 (601)
|...|++++|+| +++ +|++++.|++|++|++.+..+
T Consensus 298 H~~~V~~v~~sp-~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 298 HRDFVRDATWSP-LNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSCEEEEEECS-SSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCEEEEEEeC-CCCeEEEEEcCCCeEEEEECCCCCC
Confidence 667999999999 665 677899999999999987653
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-40 Score=315.66 Aligned_cols=307 Identities=13% Similarity=0.096 Sum_probs=232.0
Q ss_pred CCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCcc--chhhhc-cc-cccceEEEEEeCCCCEE
Q 007489 18 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG--TLLQAH-SF-HKGDVNALAAAPSHNRV 93 (601)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~--~~~~~~-~~-h~~~V~~l~~s~~~~~l 93 (601)
+.+++.++. +|...|++++|+|+ +|++|+.|+.|++||+.++ +.+..+ .+ |...|.+++|+|++++|
T Consensus 3 ~~~~~~~~~--------~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 73 (330)
T 2hes_X 3 SINLIKSLK--------LYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL 73 (330)
T ss_dssp CCEEEEEEE--------CCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE
T ss_pred ccccceeec--------cCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE
Confidence 456777887 89999999999988 9999999999999999875 344445 34 99999999999999999
Q ss_pred EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccc
Q 007489 94 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 173 (601)
Q Consensus 94 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 173 (601)
++|+.|++|++|++...... ...+.....+.+|...|.+++|+ |+++
T Consensus 74 as~s~D~~v~iw~~~~~~~~----------~~~~~~~~~~~~h~~~V~~v~~s---------p~g~-------------- 120 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADR----------TFEMDLLAIIEGHENEVKGVAWS---------NDGY-------------- 120 (330)
T ss_dssp EEEETTSCEEEEEC-----------------CCCEEEEEEC----CEEEEEEC---------TTSC--------------
T ss_pred EEEeCCCcEEEEEcccCcCc----------cccceeEEEEcCCCCcEEEEEEC---------CCCC--------------
Confidence 99999999999998653210 01123356678999999999998 8887
Q ss_pred ccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcc
Q 007489 174 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 253 (601)
Q Consensus 174 ~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~ 253 (601)
+|++|+.|+.|++||+..... .
T Consensus 121 ----------~las~s~D~~v~iwd~~~~~~----~-------------------------------------------- 142 (330)
T 2hes_X 121 ----------YLATCSRDKSVWIWETDESGE----E-------------------------------------------- 142 (330)
T ss_dssp ----------EEEEEETTSCEEEEECCTTCC----C--------------------------------------------
T ss_pred ----------EEEEEeCCCEEEEEeccCCCC----C--------------------------------------------
Confidence 999999999999999853110 0
Q ss_pred cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEE
Q 007489 254 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 332 (601)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 332 (601)
.........|...|.+++|+|++.+|++ +.|++|++|++.... ...+ ..+.+|...|.+++|
T Consensus 143 -----------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-~~~~-----~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 143 -----------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-WECV-----AVLNGHEGTVWSSDF 205 (330)
T ss_dssp -----------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEE-----EEECCCSSCEEEEEE
T ss_pred -----------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-eeEE-----EEccCCCCcEEEEEe
Confidence 0111222345688999999999999999 689999999987510 0121 456788999999999
Q ss_pred ccC--CCeEEEEecCCcEEEEEcCCC--------ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 333 SYD--SSQLIIAGHDRRIYVVDVSSS--------ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 333 s~d--~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
+|+ +.+|++++.|++|++||+..+ .....+... |...|.+++|++++ +|++++.||.|+
T Consensus 206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~v~~s~~~-~l~s~~~dg~v~ 274 (330)
T 2hes_X 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV----------HKRQVYNVAWGFNG-LIASVGADGVLA 274 (330)
T ss_dssp CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC----------CSSCEEEEEECTTS-CEEEEETTSCEE
T ss_pred cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccc----------cccceEEEEEcCCC-EEEEEeCCCEEE
Confidence 998 778999999999999998654 223333321 78899999999765 899999999999
Q ss_pred EEEcCCceE--EEEeeccCCC-ceeEEEecCC-CCCEEEEEeCCCeEEEEEcCC
Q 007489 403 IFNLEIQRQ--HWFISRLEGA-SVTAAGFPPQ-NNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 403 iwd~~~~~~--~~~~~~~~~~-~v~~l~~~p~-~~~~l~~~~~dg~v~vwd~~~ 452 (601)
||+..+++. .......|.. .|.+++|+|. ++++|++++.||+|++||++.
T Consensus 275 iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 275 VYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999987743 2223233554 8999999983 478999999999999999875
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=332.66 Aligned_cols=346 Identities=13% Similarity=0.063 Sum_probs=267.3
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeC----Cccc------hhhhccc-
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS----RHGT------LLQAHSF- 76 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~----~~~~------~~~~~~~- 76 (601)
.+.+|+........... .|...|++++|+|+| +|++|+.||.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEI--------VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP 97 (425)
T ss_dssp --------CCCEECEEE--------EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred ccccccchhhhhheeee--------eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc
Confidence 45678776555444433 577899999999998 6899999999999999 8887 3444443
Q ss_pred ---------cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeec
Q 007489 77 ---------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 147 (601)
Q Consensus 77 ---------h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 147 (601)
|.+.|.+++|+|++++|++++.||.|++|+. ++.. ...+..|...|.+++|+
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~-----------------~~~~~~~~~~v~~~~~~- 158 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL-----------------LNVLNFHRAPIVSVKWN- 158 (425)
T ss_dssp CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE-----------------EEEECCCCSCEEEEEEC-
T ss_pred ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe-----------------eeeccCCCccEEEEEEC-
Confidence 6889999999999999999999999999993 3332 56677899999999998
Q ss_pred cccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCC--------Cccce
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP--------QRVPI 219 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~ 219 (601)
|+++ .|++++.|+.|++||+.+............. .....
T Consensus 159 --------~~~~------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 159 --------KDGT------------------------HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206 (425)
T ss_dssp --------TTSS------------------------EEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred --------CCCC------------------------EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence 8886 9999999999999999875432221111100 00011
Q ss_pred eeeeccccCCCeEEEEEeC-CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCc
Q 007489 220 HLVHNTIFSHTSLLLVQYS-CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVK 297 (601)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~ 297 (601)
..+..+.+++++.+++... +.+.+|++..... +.. ...+...|.+++|+|++++|++ +.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~---------------~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 207 SLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP---------------TGK-LIGHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp CCBSCCEEEETTEEEEECGGGCEEEEETTCSSC---------------SEE-ECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce---------------eee-eccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 1277888888887665544 8999999886532 222 2356788999999999999998 67999
Q ss_pred cEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCC
Q 007489 298 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 377 (601)
Q Consensus 298 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (601)
|++|++.. +..+ ..+..|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+.. |.
T Consensus 271 i~i~d~~~---~~~~-----~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~ 330 (425)
T 1r5m_A 271 LRIWHGGN---GNSQ-----NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----------DG 330 (425)
T ss_dssp EEEECSSS---BSCS-----EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----------TT
T ss_pred EEEEECCC---Cccc-----eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----------CC
Confidence 99999986 3333 3345677899999999999 999999999999999999999988887 88
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEEcCCce--------------------EEEEeeccCCC-ceeEEEecCCCCCEE
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR--------------------QHWFISRLEGA-SVTAAGFPPQNNNVL 436 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~-~v~~l~~~p~~~~~l 436 (601)
..|.+++|+|++++|++++.||.|++||+.+++ ....+...... .|++++|+| ++++|
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 409 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKI 409 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceE
Confidence 999999999999999999999999999999887 66666644323 899999999 99999
Q ss_pred EEEeCCCeEEEEEcC
Q 007489 437 IITTSSNQVYVFDVE 451 (601)
Q Consensus 437 ~~~~~dg~v~vwd~~ 451 (601)
++++.||.|++||++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
No 24
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.3e-40 Score=318.97 Aligned_cols=292 Identities=17% Similarity=0.186 Sum_probs=233.8
Q ss_pred ceEEEEEeccCCCCCCCceEEEEEEE-----ee-CC-eEEEEcCCCcEEEeeCCcc-------chhhhccccccceEEEE
Q 007489 20 YEIYRITVGLGGLGSGPELCIWSLLS-----LR-CG-TLVSADSTGSVQFWDSRHG-------TLLQAHSFHKGDVNALA 85 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~~h~~~V~~v~~-----s~-~g-~l~s~~~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l~ 85 (601)
++...+. +|...|++++| ++ ++ .|++|+.|++|++||+.++ .+...+.+|...|.+++
T Consensus 12 ~~~~~l~--------gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 12 VKRGILE--------GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EEEEEEE--------CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE
T ss_pred eeeeeec--------cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE
Confidence 4455666 89999999999 66 78 8999999999999999743 44567889999999999
Q ss_pred EeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCC
Q 007489 86 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 165 (601)
Q Consensus 86 ~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~ 165 (601)
|+|++.+|++|+.|++|++||+.+++. ...+.+|...|.+++|+ |+++
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~-----------------~~~~~~h~~~v~~v~~s---------p~~~------ 131 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTT-----------------YKRFVGHQSEVYSVAFS---------PDNR------ 131 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCE-----------------EEEEECCCSCEEEEEEC---------SSTT------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcE-----------------EEEEcCCCCcEEEEEEC---------CCCC------
Confidence 999999999999999999999998774 66788999999999998 8887
Q ss_pred CCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEee
Q 007489 166 REKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILS 245 (601)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~ 245 (601)
.|++++.|+.|++||+........
T Consensus 132 ------------------~l~s~~~d~~i~~wd~~~~~~~~~-------------------------------------- 155 (343)
T 2xzm_R 132 ------------------QILSAGAEREIKLWNILGECKFSS-------------------------------------- 155 (343)
T ss_dssp ------------------EEEEEETTSCEEEEESSSCEEEEC--------------------------------------
T ss_pred ------------------EEEEEcCCCEEEEEeccCCceeee--------------------------------------
Confidence 999999999999999863110000
Q ss_pred ccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC----------CEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 246 VRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG----------MLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g----------~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.. ...|...|.+++|+|++ .++++ +.|+.|++|+.. ....
T Consensus 156 -~~----------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~-- 206 (343)
T 2xzm_R 156 -AE----------------------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIR-- 206 (343)
T ss_dssp -CT----------------------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEE--
T ss_pred -ec----------------------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----Ccee--
Confidence 00 00234567788888776 67887 799999999943 2222
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
..+..|...|.+++|+|++++|++|+.||.|++||+.. ......+. +...|.+++|+|++++|+
T Consensus 207 ---~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~------------~~~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 207 ---YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD------------AGSTINQIAFNPKLQWVA 271 (343)
T ss_dssp ---EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE------------CSSCEEEEEECSSSCEEE
T ss_pred ---EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec------------CCCcEEEEEECCCCCEEE
Confidence 34567888999999999999999999999999999943 34444443 455699999999999887
Q ss_pred EEecCCeEEEEEcCCceEEE--Eeec----------cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 394 AVNCFGDVYIFNLEIQRQHW--FISR----------LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 394 s~~~dg~i~iwd~~~~~~~~--~~~~----------~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
++ .|+.|++|++.+++... .+.. .|...|++++|+| ++++|++|+.||.|++|+++++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence 65 57779999998765432 2221 2446799999999 9999999999999999998765
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-39 Score=307.08 Aligned_cols=294 Identities=14% Similarity=0.149 Sum_probs=248.2
Q ss_pred hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 70 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 70 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
...++.+|.+.|.+++|+|++++|++|+.||+|++||+.++.. ...+..|...|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------------~~~~~~~~~~v~~~~~~--- 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------------VRSIQVTETPVRAGKFI--- 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------EEEEECCSSCEEEEEEE---
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------------eEEeeccCCcEEEEEEe---
Confidence 4567889999999999999999999999999999999988764 66778899999999998
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
|+++ .|++|+.|+.|++||+.+..
T Consensus 65 ------~~~~------------------------~l~s~s~d~~i~vwd~~~~~-------------------------- 88 (304)
T 2ynn_A 65 ------ARKN------------------------WIIVGSDDFRIRVFNYNTGE-------------------------- 88 (304)
T ss_dssp ------GGGT------------------------EEEEEETTSEEEEEETTTCC--------------------------
T ss_pred ------CCCC------------------------EEEEECCCCEEEEEECCCCc--------------------------
Confidence 8887 99999999999999987521
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~ 308 (601)
.+ .....|...|.+++|+|++++|++ +.|++|++|++..
T Consensus 89 ------------------------------------~~-~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~--- 128 (304)
T 2ynn_A 89 ------------------------------------KV-VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--- 128 (304)
T ss_dssp ------------------------------------EE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG---
T ss_pred ------------------------------------EE-EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC---
Confidence 11 112346688999999999999998 7999999999985
Q ss_pred CcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 309 GQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
+..+ ...+.+|...|.+++|+| ++.+|++|+.|++|++||+.++.....+... |...+..+.|+|
T Consensus 129 ~~~~----~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~~ 194 (304)
T 2ynn_A 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG----------QERGVNYVDYYP 194 (304)
T ss_dssp TTEE----EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC----------CTTCEEEEEECC
T ss_pred Ccch----hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC----------CcCcEEEEEEEE
Confidence 3222 244678889999999999 6789999999999999999887766666542 667899999987
Q ss_pred --CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCC
Q 007489 388 --DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFV 465 (601)
Q Consensus 388 --d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 465 (601)
++++|++++.|+.|+|||+.++++...+.. |...|.+++|+| ++.+|++++.||+|++||+.++++
T Consensus 195 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~---------- 262 (304)
T 2ynn_A 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV---------- 262 (304)
T ss_dssp STTCCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE----------
T ss_pred cCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-CCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce----------
Confidence 788999999999999999999998877775 557899999999 999999999999999999998874
Q ss_pred cCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 466 LPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 466 ~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
.+.+..|...+.+++|+|++....+.....+++.++++..
T Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 263 -EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp -EEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred -eeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 4467778899999999998333346666788888888764
No 26
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-40 Score=345.96 Aligned_cols=360 Identities=11% Similarity=0.064 Sum_probs=268.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCce---EEEEEEEeeC-C-eEEEEcCCCcEEEeeCCccchhhhc-
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL---CIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGTLLQAH- 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~~-g-~l~s~~~dg~i~vwd~~~~~~~~~~- 74 (601)
+|++|+.||.|++||+.+++.+..+. +|.. .|++++|+|+ + .|++++.||.|++||+.+++.+..+
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 246 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDR--------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 246 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEEC--------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeec--------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence 38999999999999999999999987 7888 9999999999 8 8999999999999999999999888
Q ss_pred c---ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc----ccceeEEEeec
Q 007489 75 S---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH----THDVRALTVAV 147 (601)
Q Consensus 75 ~---~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~ 147 (601)
. .|...|.+++|+ ++++|++++.|+.|++||+.+++. ...+..+ ...+.++.+
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-- 306 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-----------------VQKWTLDKQQLGNQQVGVVA-- 306 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-----------------EEEEECCTTCGGGCEEEEEE--
T ss_pred ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-----------------EEEEcCCCCcccCceeEEEe--
Confidence 6 899999999999 999999999999999999988763 3333333 456667766
Q ss_pred cccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecccc
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF 227 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (601)
+++. .+++++.|+.|++||+.+........ .+...+.++++
T Consensus 307 --------~~~~------------------------~l~~~~~~g~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~ 347 (615)
T 1pgu_A 307 --------TGNG------------------------RIISLSLDGTLNFYELGHDEVLKTIS-------GHNKGITALTV 347 (615)
T ss_dssp --------EETT------------------------EEEEEETTSCEEEEETTEEEEEEEEC-------CCSSCEEEEET
T ss_pred --------CCCC------------------------eEEEEECCCCEEEEECCCCcEEEEEe-------CCCCCEEEEEe
Confidence 3443 88899999999999987633221111 11245667777
Q ss_pred CCCeEEEEEeCCeeEEeeccccCCcccC-----CCCC-CC-------CCcceE---EEE---------------------
Q 007489 228 SHTSLLLVQYSCRLDILSVRLENNVESR-----SSSG-GH-------ASTSLL---VQV--------------------- 270 (601)
Q Consensus 228 ~~~~~~l~~~~~~i~i~~~~~~~~~~~~-----~~~~-~~-------~~~~~~---~~~--------------------- 270 (601)
|+ .+.++.++.+++|++.... .... .... +. .....+ ...
T Consensus 348 -~~-l~~~~~dg~i~~w~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 348 -NP-LISGSYDGRIMEWSSSSMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT 424 (615)
T ss_dssp -TT-TEEEETTSCEEETTTTEEE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE
T ss_pred -cC-cEEECCCCeEEEEEchhhc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe
Confidence 76 4444455777777765110 0000 0000 00 000000 000
Q ss_pred -----------------EecCCCCeEEEEEcCCCCEEEE-Ec-CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEE
Q 007489 271 -----------------KSKASRKIICSTISNSGMLFAY-SD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMI 331 (601)
Q Consensus 271 -----------------~~~~~~~i~~~~~s~~g~~l~~-~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 331 (601)
...+...+.+++++ ++++++ +. ++.+++|++.. +. +....+..|...|.+++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~---~~----~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 425 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD---LE----VSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTE---EE----EEEECSSCCSSCEEEEE
T ss_pred CCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCC---cc----ccccccCCccCceEEEE
Confidence 00123345555555 555555 34 66677776654 11 11145677888999999
Q ss_pred EccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc----------CCCEEEEEecCCeE
Q 007489 332 FSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS----------DGQWLAAVNCFGDV 401 (601)
Q Consensus 332 ~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp----------d~~~las~~~dg~i 401 (601)
|+|++++|++++.||.|++||+.+++.+..+.+. |...|++++|+| ++++||+++.||.|
T Consensus 496 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i 565 (615)
T 1pgu_A 496 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----------RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 565 (615)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----------CSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC----------CCCceeEEEEcCccccccccccCCCEEEEEcCCCcE
Confidence 9999999999999999999999999988877653 788999999999 99999999999999
Q ss_pred EEEEcCCc-eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 402 YIFNLEIQ-RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 402 ~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
++||+.++ +....+. .|...|++++|+| ++. |++++.|+.|++|+++.
T Consensus 566 ~iw~~~~~~~~~~~~~-~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 566 FIYSVKRPMKIIKALN-AHKDGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEESSCTTCCEEETT-SSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred EEEECCCCceechhhh-cCccceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 99999987 5555554 4667999999999 998 99999999999999875
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.2e-40 Score=317.06 Aligned_cols=266 Identities=17% Similarity=0.183 Sum_probs=230.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc----hhhhcc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT----LLQAHS 75 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~----~~~~~~ 75 (601)
+|++|+.||+|+|||+.+++.+..+. .|...|.+++|+|+| +|++|+.|+.|++||+.+++ ....+.
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE--------CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCCcceEee--------cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 48999999999999999999999998 799999999999999 99999999999999998653 445678
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
+|.+.|.++.|++++. +++++.|++|++||+.++.. ...+.+|...|.+++|+
T Consensus 141 ~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~-----------------~~~~~~h~~~v~~~~~~--------- 193 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ-----------------TTTFTGHTGDVMSLSLA--------- 193 (340)
T ss_dssp CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE-----------------EEEECCCSSCEEEEEEC---------
T ss_pred CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE-----------------EEEEcCCCCceEEEEEC---------
Confidence 8999999999998765 88999999999999998764 66778999999999998
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
|+++ +|++|+.|+.|++||+++..
T Consensus 194 ~~~~------------------------~l~sg~~d~~v~~wd~~~~~-------------------------------- 217 (340)
T 1got_B 194 PDTR------------------------LFVSGACDASAKLWDVREGM-------------------------------- 217 (340)
T ss_dssp TTSS------------------------EEEEEETTSCEEEEETTTCS--------------------------------
T ss_pred CCCC------------------------EEEEEeCCCcEEEEECCCCe--------------------------------
Confidence 8876 99999999999999987521
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.......|...|.+++|+|++++|++ +.|+.|++||++. +..+.
T Consensus 218 -------------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~- 262 (340)
T 1got_B 218 -------------------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA---DQELM- 262 (340)
T ss_dssp -------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEE-
T ss_pred -------------------------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC---CcEEE-
Confidence 11112235678999999999999999 6899999999975 33321
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
......+...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+|++++||+
T Consensus 263 --~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~-----------h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 263 --TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-----------HDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp --EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECTTSSCEEE
T ss_pred --EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec-----------CCCcEEEEEEcCCCCEEEE
Confidence 122334445799999999999999999999999999999999999988 9999999999999999999
Q ss_pred EecCCeEEEEE
Q 007489 395 VNCFGDVYIFN 405 (601)
Q Consensus 395 ~~~dg~i~iwd 405 (601)
|+.||.|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-39 Score=307.67 Aligned_cols=284 Identities=17% Similarity=0.233 Sum_probs=243.0
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+|...|++++|+|++ +|++++.||.|++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~- 99 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC- 99 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE-
Confidence 899999999999999 999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+.+|...|.+++|+ |+++ +|++|+.|+.
T Consensus 100 ----------------~~~~~~~~~~v~~~~~~---------~~~~------------------------~l~s~~~d~~ 130 (312)
T 4ery_A 100 ----------------LKTLKGHSNYVFCCNFN---------PQSN------------------------LIVSGSFDES 130 (312)
T ss_dssp ----------------EEEEECCSSCEEEEEEC---------SSSS------------------------EEEEEETTSC
T ss_pred ----------------EEEEcCCCCCEEEEEEc---------CCCC------------------------EEEEEeCCCc
Confidence 66778899999999998 8876 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++||+++... + .....
T Consensus 131 i~iwd~~~~~~--------------------------------------------------------------~-~~~~~ 147 (312)
T 4ery_A 131 VRIWDVKTGKC--------------------------------------------------------------L-KTLPA 147 (312)
T ss_dssp EEEEETTTCCE--------------------------------------------------------------E-EEECC
T ss_pred EEEEECCCCEE--------------------------------------------------------------E-EEecC
Confidence 99999875210 1 11123
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
|...|.+++|+|+++++++ +.|+.|++||+.. +..+. .....+...+..++|+|++++|++++.||.|++||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLK----TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEE----EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC---Cceee----EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4577999999999999988 6899999999975 33321 22344566899999999999999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCC---eeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPP---ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
+.+++.+..+.+ |... +......+++++|++|+.||.|++||+.+++....+.. |...|.+++|+
T Consensus 221 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~ 288 (312)
T 4ery_A 221 YSKGKCLKTYTG-----------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACH 288 (312)
T ss_dssp TTTTEEEEEECS-----------SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC-CSSCEEEEEEC
T ss_pred CCCCcEEEEEEe-----------cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc-cCCcEEEEeec
Confidence 999999888887 4333 23333446889999999999999999999998877764 55789999999
Q ss_pred CCCCCEEEEEe--CCCeEEEEEcC
Q 007489 430 PQNNNVLIITT--SSNQVYVFDVE 451 (601)
Q Consensus 430 p~~~~~l~~~~--~dg~v~vwd~~ 451 (601)
| ++.+|++++ .|++|++|+.+
T Consensus 289 p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 P-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp S-SSSEEEEEECTTTCCEEEEECC
T ss_pred C-cCCceEEEEccCCccEEEecCC
Confidence 9 999999987 69999999865
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-39 Score=318.57 Aligned_cols=289 Identities=12% Similarity=0.148 Sum_probs=235.7
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc------------------ceEEEEEeCCCCEEEE
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG------------------DVNALAAAPSHNRVFS 95 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~------------------~V~~l~~s~~~~~l~s 95 (601)
+|...|++++|+||| +|++|+ ++.+++|++.+++.+..+..|.. .|.+++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 599999999999999 777766 78999999999988877765542 4999999999999999
Q ss_pred EeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccc
Q 007489 96 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175 (601)
Q Consensus 96 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 175 (601)
|+.|+.|++||+.+++. ...+.+|...|.+++|+ |+++
T Consensus 141 ~~~d~~i~iwd~~~~~~-----------------~~~~~~h~~~v~~~~~~---------p~~~---------------- 178 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI-----------------VMILQGHEQDIYSLDYF---------PSGD---------------- 178 (393)
T ss_dssp EETTSCEEEEETTTTEE-----------------EEEECCCSSCEEEEEEC---------TTSS----------------
T ss_pred EcCCCeEEEEECCCCcE-----------------EEEEccCCCCEEEEEEc---------CCCC----------------
Confidence 99999999999988764 56788999999999998 8886
Q ss_pred ccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccC
Q 007489 176 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 255 (601)
Q Consensus 176 ~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~ 255 (601)
.|++++.|+.|++||+++..
T Consensus 179 --------~l~s~s~d~~v~iwd~~~~~---------------------------------------------------- 198 (393)
T 1erj_A 179 --------KLVSGSGDRTVRIWDLRTGQ---------------------------------------------------- 198 (393)
T ss_dssp --------EEEEEETTSEEEEEETTTTE----------------------------------------------------
T ss_pred --------EEEEecCCCcEEEEECCCCe----------------------------------------------------
Confidence 99999999999999987521
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEee--ecCCcCccceeEEE
Q 007489 256 SSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK--RQLPRKLQFAHSMI 331 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~ 331 (601)
....+ .+...+.+++++| ++++|++ +.|+.|++||+.. +..+..+.. ....+|...|.+++
T Consensus 199 ----------~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~---~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 199 ----------CSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET---GFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp ----------EEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT---CCEEEEEC------CCCSSCEEEEE
T ss_pred ----------eEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC---CcEEEeecccccCCCCCCCCEEEEE
Confidence 01111 1236689999999 8999998 6899999999875 333211211 22357888999999
Q ss_pred EccCCCeEEEEecCCcEEEEEcCCCc------------eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 332 FSYDSSQLIIAGHDRRIYVVDVSSSE------------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 332 ~s~d~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
|+|++++|++++.|+.|++||+.+.. +...+.+ |...|.+++|+|++++|++|+.||
T Consensus 264 ~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-----------HKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC-----------CSSCEEEEEECGGGCEEEEEETTS
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec-----------ccCcEEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999999997543 3344555 889999999999999999999999
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCC-----CCCEEEEEeCCCeEEEEEcCCC
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ-----NNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~-----~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
.|++||+.+++....+.. |...|.+++|++. ++++|++++.||+|++|++...
T Consensus 333 ~v~iwd~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 333 GVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEETTTCCEEEEEEC-CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred eEEEEECCCCeEEEEECC-CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999998877764 5578999998751 5789999999999999998754
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-41 Score=335.74 Aligned_cols=321 Identities=13% Similarity=0.135 Sum_probs=255.8
Q ss_pred ecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc----cchhhhccccccc
Q 007489 6 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGD 80 (601)
Q Consensus 6 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~ 80 (601)
+.||.|+|||+.+++....+. ...|...|.+++|+|++ +|++++.||.|++||+.+ .+.+..+.+|...
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~ 115 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIA------SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS 115 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSC------CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC
T ss_pred CCCCeEEEEEccCCCCCcEEE------EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc
Confidence 899999999998876321111 11588999999999999 999999999999999987 3577888899999
Q ss_pred eEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 81 VNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 81 V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
|.+++|+|+ +++|++++.|+.|++||+.++...... ...........|...|.+++|+ |++.
T Consensus 116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~---------~~~~ 178 (416)
T 2pm9_A 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--------YTPLTPGQSMSSVDEVISLAWN---------QSLA 178 (416)
T ss_dssp CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--------CCCBCCCCSCCSSCCCCEEEEC---------SSCT
T ss_pred eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--------ccccccccccCCCCCeeEEEeC---------CCCC
Confidence 999999998 899999999999999999887510000 0000123456789999999998 7732
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.+|++++.|+.|++||+.+...
T Consensus 179 -----------------------~~l~~~~~dg~v~iwd~~~~~~----------------------------------- 200 (416)
T 2pm9_A 179 -----------------------HVFASAGSSNFASIWDLKAKKE----------------------------------- 200 (416)
T ss_dssp -----------------------TEEEEESSSSCEEEEETTTTEE-----------------------------------
T ss_pred -----------------------cEEEEEcCCCCEEEEECCCCCc-----------------------------------
Confidence 3999999999999999876221
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEe-----cCCCCeEEEEEcCCC-CEEEE-EcCC---ccEEEEeecCCCC
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKS-----KASRKIICSTISNSG-MLFAY-SDHV---KPSLFELKKGKVG 309 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~g-~~l~~-~~~~---~v~l~~~~~~~~~ 309 (601)
+..+.. .+...+.+++|+|++ .++++ +.++ .|++|+++.. .
T Consensus 201 ---------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~--~ 251 (416)
T 2pm9_A 201 ---------------------------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA--N 251 (416)
T ss_dssp ---------------------------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST--T
T ss_pred ---------------------------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC--C
Confidence 001111 124779999999997 57777 5676 9999999862 1
Q ss_pred cceEEEeeecCC-cCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 310 QGEWIINKRQLP-RKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 310 ~~~~~~~~~~~~-~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
..+ ..+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+.. |...|.+++|+|
T Consensus 252 ~~~-----~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~v~~~~~s~ 315 (416)
T 2pm9_A 252 TPL-----QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-----------RGNWCFKTKFAP 315 (416)
T ss_dssp SCS-----BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-----------SSSCCCCEEECT
T ss_pred CCc-----EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-----------CCCceEEEEECC
Confidence 222 3455 7888999999999 999999999999999999999999999988 889999999999
Q ss_pred CC-CEEEEEecCCeEEEEEcCCceEEEEe----------------------------------eccCCCceeEEEecCCC
Q 007489 388 DG-QWLAAVNCFGDVYIFNLEIQRQHWFI----------------------------------SRLEGASVTAAGFPPQN 432 (601)
Q Consensus 388 d~-~~las~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~~~~v~~l~~~p~~ 432 (601)
++ ++|++++.||.|+||++.+....... +..+..++.+++|+| +
T Consensus 316 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 394 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-G 394 (416)
T ss_dssp TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-T
T ss_pred CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-C
Confidence 99 89999999999999999876532111 011446778999999 9
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 007489 433 NNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 433 ~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+++|++++.|+.|+||++.+.
T Consensus 395 g~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 395 GKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TEEECBCTTSSCBCCBCCCCC
T ss_pred CeEEEEeCCCCeEEEEEeccC
Confidence 999999999999999999864
No 31
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-39 Score=313.98 Aligned_cols=309 Identities=15% Similarity=0.167 Sum_probs=239.1
Q ss_pred eeecCCcEEEE--EC--CCCceEEEEEeccCCCCCCCceEEEEEEEeeC-C-eEEEEcCCCcEEEeeCCccc-----hhh
Q 007489 4 SGSSDGYIRSW--DA--KLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGT-----LLQ 72 (601)
Q Consensus 4 tg~~dg~i~iw--d~--~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-g-~l~s~~~dg~i~vwd~~~~~-----~~~ 72 (601)
+|.+.|+..+| .. ++.++..+|+ ||.+.|++|+|+|+ + +|+||+.||+|+|||+.+++ +..
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~--------GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~ 80 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLK--------GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR 80 (340)
T ss_dssp -----------------CEEEEEEEEC--------CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE
T ss_pred cccCCCCccEEEEEccCCceEEEEEEC--------CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE
Confidence 44444553333 33 3344455666 99999999999998 4 89999999999999987654 456
Q ss_pred hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
.+.+|...|.+++|+|++++|++++.|+.|++|+...... ......+...+..+.+.
T Consensus 81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~------ 137 (340)
T 4aow_A 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----------------TRRFVGHTKDVLSVAFS------ 137 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------EEEEECCSSCEEEEEEC------
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce-----------------eeeecCCCCceeEEEEe------
Confidence 7889999999999999999999999999999999988663 44455667777777776
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
+++. .|++++.|+.+++||......
T Consensus 138 ---~~~~------------------------~l~s~s~d~~~~~~d~~~~~~---------------------------- 162 (340)
T 4aow_A 138 ---SDNR------------------------QIVSGSRDKTIKLWNTLGVCK---------------------------- 162 (340)
T ss_dssp ---TTSS------------------------CEEEEETTSCEEEECTTSCEE----------------------------
T ss_pred ---ecCc------------------------cceeecCCCeEEEEEeCCCce----------------------------
Confidence 6665 899999999999999764110
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEE-EcCCccEEEEeecCCCC
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
.......+...+.++++++++ .++++ +.|+.|++|++.. +
T Consensus 163 ----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---~ 205 (340)
T 4aow_A 163 ----------------------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---C 205 (340)
T ss_dssp ----------------------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---T
T ss_pred ----------------------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---C
Confidence 001111335678888888865 45566 6899999999975 3
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
..+ ..+.+|...|++++|+|++++|++|+.||.|++||+.+.+.+..+. +...|.+++|+|++
T Consensus 206 ~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~ 268 (340)
T 4aow_A 206 KLK-----TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD------------GGDIINALCFSPNR 268 (340)
T ss_dssp EEE-----EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------------CSSCEEEEEECSSS
T ss_pred cee-----eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec------------CCceEEeeecCCCC
Confidence 332 4456788899999999999999999999999999999999888887 45679999999998
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeec--------cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISR--------LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
.++ +++.|+.|+|||++++.....+.. .|...|++++|+| ++++|++|+.||.|+|||+++|.
T Consensus 269 ~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 269 YWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred cee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 765 455799999999998877655432 2457899999999 99999999999999999999874
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-39 Score=309.15 Aligned_cols=293 Identities=18% Similarity=0.190 Sum_probs=227.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc--chhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG--TLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~--~~~~~~~~h 77 (601)
+||+|+.|++|+|||+.++........ ..+|...|.+++|+|+| +|++|+.|+.|++||..++ +++..+.+|
T Consensus 30 ~las~~~D~~i~iw~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h 104 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDSWICKSVL-----SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH 104 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEE-----CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC
T ss_pred EEEEEcCCCeEEEEEcCCCcceeeeee-----ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC
Confidence 589999999999999988865443321 12799999999999999 9999999999999998766 456788999
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
...|.+++|+|++++|++|+.|++|++||+..+.. +.+...+..|...|.+++|+ |+
T Consensus 105 ~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--------------~~~~~~~~~h~~~v~~~~~~---------p~ 161 (345)
T 3fm0_A 105 ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--------------YECVSVLNSHTQDVKHVVWH---------PS 161 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC--------------EEEEEEECCCCSCEEEEEEC---------SS
T ss_pred CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC--------------eEEEEEecCcCCCeEEEEEC---------CC
Confidence 99999999999999999999999999999987542 22345677899999999998 88
Q ss_pred ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 237 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (601)
++ +|++++.|+.|++|+......
T Consensus 162 ~~------------------------~l~s~s~d~~i~~w~~~~~~~--------------------------------- 184 (345)
T 3fm0_A 162 QE------------------------LLASASYDDTVKLYREEEDDW--------------------------------- 184 (345)
T ss_dssp SS------------------------CEEEEETTSCEEEEEEETTEE---------------------------------
T ss_pred CC------------------------EEEEEeCCCcEEEEEecCCCE---------------------------------
Confidence 86 999999999999999764110
Q ss_pred CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCc------
Q 007489 238 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQ------ 310 (601)
Q Consensus 238 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~------ 310 (601)
........|...|.+++|+|+|++|++ +.|++|++|+........
T Consensus 185 ----------------------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 185 ----------------------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp ----------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred ----------------------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec
Confidence 011122345688999999999999999 799999999986422111
Q ss_pred --ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce----eeeeccCcccccccCCCCCCCeeEEE
Q 007489 311 --GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL----LHTFTPCREEHDREIQPSEPPITKMF 384 (601)
Q Consensus 311 --~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~ 384 (601)
..|.........|...|.+++|+|++..|++++.|+.|++|+...+.. ...+..+ ....|...|++++
T Consensus 237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~------~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH------LHQAHSQDVNCVA 310 (345)
T ss_dssp --CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE------ETTSSSSCEEEEE
T ss_pred cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee------ecccccCcEeEeE
Confidence 112111112223778899999999999999999999999999865421 1111100 0112899999999
Q ss_pred EccCC-CEEEEEecCCeEEEEEcCCceEE
Q 007489 385 TSSDG-QWLAAVNCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 385 ~spd~-~~las~~~dg~i~iwd~~~~~~~ 412 (601)
|+|++ .+||+|+.||+|++|++.+.+..
T Consensus 311 ~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 311 WNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp ECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred EeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 99998 59999999999999999888764
No 33
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.7e-39 Score=349.07 Aligned_cols=371 Identities=12% Similarity=0.130 Sum_probs=291.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||.|+|||+.+++.+.++. +|...|.+++|+|++ .|++++.||.|++||+.+++.+..+.+|.+
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 98 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD 98 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEe--------cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Confidence 48999999999999999999999998 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC-cc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP-ED 158 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-d~ 158 (601)
.|.+++|+|++++|++++.||.|++|++.++.. ....+..|...|.+++|+ | ++
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------------~~~~~~~~~~~v~~~~~~---------p~~~ 153 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------LEQTFEGHEHFVMCVAFN---------PKDP 153 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----------------EEEEEECCSSCEEEEEEE---------TTEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----------------EEEEEcCCCCcEEEEEEE---------cCCC
Confidence 999999999999999999999999999987621 255677899999999998 8 66
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC--CeEEEEE
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH--TSLLLVQ 236 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 236 (601)
. .|++++.|+.|++||+........... .....+..++|+| ++.++++
T Consensus 154 ~------------------------~l~~~~~dg~v~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 154 S------------------------TFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp E------------------------EEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCCCEEEECCSTTCCEEEE
T ss_pred C------------------------EEEEEeCCCeEEEEECCCCcceeEEec------CCCCCEEEEEEEECCCCCEEEE
Confidence 6 999999999999999876432211110 0113456677877 8877776
Q ss_pred eC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceE
Q 007489 237 YS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 237 ~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~ 313 (601)
++ +.+.+|++.... .+ .....|...|.+++|+|+++++++ +.++.|++|++.. +..+
T Consensus 204 ~~~dg~i~~~d~~~~~---------------~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~- 263 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKS---------------CV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVE- 263 (814)
T ss_dssp ECTTSEEEEEETTTTE---------------EE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---CSEE-
T ss_pred EeCCCEEEEEECCCCc---------------EE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEE-
Confidence 55 889999986432 22 333456788999999999999998 6789999999875 4443
Q ss_pred EEeeecCCcCccceeEEEEccCCCe-EEEEecCCcEEEEEcCCCceeeeeccCcc-------------------------
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQ-LIIAGHDRRIYVVDVSSSELLHTFTPCRE------------------------- 367 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------- 367 (601)
..+..+...+.+++|+|++.. +++++.++.+.+|++........+.+...
T Consensus 264 ----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 264 ----KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp ----EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred ----EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 344556778999999999874 24445577799999865543333221100
Q ss_pred -------cccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe
Q 007489 368 -------EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 368 -------~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~ 440 (601)
........+...+.+++|+|+|++|++++ ++.+.+|++....... ...+.+++|+| ++++|++++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~------~~~i~~~~~sp-dg~~la~~~ 411 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA------FGKCQDFVWGP-DSNSYALID 411 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE------EEECSEEEECT-TSSCEEEEC
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC------CCceEEEEEeC-CCCeEEEEe
Confidence 00011133566789999999999999998 8999999987655421 24688999999 999999999
Q ss_pred CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 441 SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 441 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
.++.|++|+.- .+|...+..+.|+|+
T Consensus 412 ~~g~v~l~~~~-------------------~~~~~~v~~~~~s~d 437 (814)
T 3mkq_A 412 ETGQIKYYKNF-------------------KEVTSWSVPMHSAID 437 (814)
T ss_dssp TTCCEEEEETT-------------------EECTTCCCCCSSCCC
T ss_pred CCCcEEEEECC-------------------CCccceEEcCCcCcc
Confidence 99999999632 345666777778877
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.9e-39 Score=311.59 Aligned_cols=269 Identities=19% Similarity=0.213 Sum_probs=229.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc------chhhh
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG------TLLQA 73 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~------~~~~~ 73 (601)
+||||+.||+|+|||..+++..+.+. .|...|.+++|+|+| .|++|+.|+.+++|++... .....
T Consensus 78 ~l~s~s~Dg~v~vWd~~~~~~~~~~~--------~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~ 149 (354)
T 2pbi_B 78 RIVSSSQDGKVIVWDSFTTNKEHAVT--------MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEE
T ss_pred EEEEEeCCCeEEEEECCCCCcceEEe--------cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccccee
Confidence 48999999999999999999999998 788899999999999 9999999999999998643 23455
Q ss_pred ccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 74 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
+.+|...|.+++|+|++..|++++.|++|++||+.+++. ...+.+|...|.+++++
T Consensus 150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----------------~~~~~~h~~~v~~~~~~------- 205 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-----------------LQSFHGHGADVLCLDLA------- 205 (354)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------EEEEECCSSCEEEEEEC-------
T ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------------EEEEcCCCCCeEEEEEE-------
Confidence 678999999999999999999999999999999998874 67788999999999987
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
|+.. +..|++|+.|+.|++||+++..
T Consensus 206 --~~~~----------------------g~~l~sgs~Dg~v~~wd~~~~~------------------------------ 231 (354)
T 2pbi_B 206 --PSET----------------------GNTFVSGGCDKKAMVWDMRSGQ------------------------------ 231 (354)
T ss_dssp --CCSS----------------------CCEEEEEETTSCEEEEETTTCC------------------------------
T ss_pred --eCCC----------------------CCEEEEEeCCCeEEEEECCCCc------------------------------
Confidence 4311 1399999999999999987521
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcce
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
.......|...|.+++|+|++.+|++ +.|+.|++||++. ...+
T Consensus 232 ---------------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~---~~~~ 275 (354)
T 2pbi_B 232 ---------------------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA---DREV 275 (354)
T ss_dssp ---------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEE
T ss_pred ---------------------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC---CcEE
Confidence 11112245678999999999999999 7899999999975 2222
Q ss_pred EEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE
Q 007489 313 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 392 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l 392 (601)
.......+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+ |...|++++|+|||++|
T Consensus 276 ---~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-----------h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 276 ---AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-----------HENRVSTLRVSPDGTAF 341 (354)
T ss_dssp ---EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-----------CSSCEEEEEECTTSSCE
T ss_pred ---EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-----------CCCcEEEEEECCCCCEE
Confidence 1122233345789999999999999999999999999999998888887 99999999999999999
Q ss_pred EEEecCCeEEEEE
Q 007489 393 AAVNCFGDVYIFN 405 (601)
Q Consensus 393 as~~~dg~i~iwd 405 (601)
++|+.||.|+||+
T Consensus 342 ~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 342 CSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEcCCCCEEecC
Confidence 9999999999996
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-39 Score=323.94 Aligned_cols=344 Identities=11% Similarity=0.060 Sum_probs=267.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|++|+.||.|++||+.+++....+. .| ..+....|+|++ +|++|+.||.|++||+.+++....+.+|..
T Consensus 70 ~l~~~~~d~~v~i~d~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 140 (420)
T 3vl1_A 70 HLYKARLDGHDFLFNTIIRDGSKMLK--------RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVS 140 (420)
T ss_dssp TEEEEEETTEEEEEECCSEETTTTSC--------SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred eEEEEEcCCcEEEEEecccceeeEEe--------cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccC
Confidence 58999999999999998776644443 45 556666789999 999999999999999999999888899999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++|+|++++|++|+.|+.|++||+.+++. ...+.+|...|.+++|+ |+++
T Consensus 141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------------~~~~~~h~~~v~~~~~~---------~~~~ 194 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------------PRTLIGHRATVTDIAII---------DRGR 194 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------------CEEEECCSSCEEEEEEE---------TTTT
T ss_pred ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------------ceEEcCCCCcEEEEEEc---------CCCC
Confidence 999999999999999999999999999998775 56678899999999999 8886
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.|++++.|+.|++||+++.+..
T Consensus 195 ------------------------~l~s~~~d~~v~iwd~~~~~~~---------------------------------- 216 (420)
T 3vl1_A 195 ------------------------NVLSASLDGTIRLWECGTGTTI---------------------------------- 216 (420)
T ss_dssp ------------------------EEEEEETTSCEEEEETTTTEEE----------------------------------
T ss_pred ------------------------EEEEEcCCCcEEEeECCCCcee----------------------------------
Confidence 9999999999999998752210
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEe--cCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKS--KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
..+.. .+...+.++++.+++...
T Consensus 217 ----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~--------------------------- 241 (420)
T 3vl1_A 217 ----------------------------HTFNRKENPHDGVNSIALFVGTDRQ--------------------------- 241 (420)
T ss_dssp ----------------------------EEECBTTBTTCCEEEEEEEECCCSS---------------------------
T ss_pred ----------------------------EEeecCCCCCCCccEEEEecCCcce---------------------------
Confidence 01100 123557777766543110
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEe
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVN 396 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~ 396 (601)
....+...+.+++|+|++++|++++.||.|++||+.+++.+..+... |...|++++|+|+++ +|++|+
T Consensus 242 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 242 -LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK----------FTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp -CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT----------TSSCEEEEEECSSCTTEEEEEE
T ss_pred -eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc----------cCCCceeEEEeCCCCCEEEEEe
Confidence 11223456788999999999999999999999999988877776542 788999999999999 999999
Q ss_pred cCCeEEEEEcCCceE-EEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCC
Q 007489 397 CFGDVYIFNLEIQRQ-HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPG 475 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (601)
.||.|++||+.+++. ...+...+...|.++.|. ++++|++++.|+.|++|++...+.... ......+..+.+|.+
T Consensus 311 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 311 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDIISDPESERP--AIEFETPTFLVSNDD 386 (420)
T ss_dssp TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSC--EECTTSCEEECCSSC
T ss_pred CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEeccCCCCCcc--ceeccCccEEccCCc
Confidence 999999999998753 445665566788888665 578999999999999999987432110 001112334667889
Q ss_pred cEEEEEeCCCCC-CCEEEEEc-CceEEEEeCCCC
Q 007489 476 EVIGLSFSPSPS-SSSVIIYS-ARAMCVIDFGRP 507 (601)
Q Consensus 476 ~v~~i~~~p~~~-~~~~~~~~-~~~~~~~~~~~~ 507 (601)
.|.+++|+|++. ++.++..+ ...+.+++++.|
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred ceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 999999999933 22455554 455556777653
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.8e-40 Score=314.10 Aligned_cols=246 Identities=17% Similarity=0.174 Sum_probs=202.5
Q ss_pred CceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhc----cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 36 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH----SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 36 h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
|+..|.+++|+|++.|++|+.||+|+|||+.+++.+..+ .+|.+.|++++|+|+|++|++|+.|++|++||+.+++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 567799999999999999999999999999998876543 4799999999999999999999999999999999887
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
. +..+.+|...|.+++|+ |++. .+|++++.|
T Consensus 161 ~-----------------~~~~~~h~~~V~~~~~~---------~~~~-----------------------~~l~s~s~D 191 (344)
T 4gqb_B 161 V-----------------LSSYRAHAAQVTCVAAS---------PHKD-----------------------SVFLSCSED 191 (344)
T ss_dssp E-----------------EEEECCCSSCEEEEEEC---------SSCT-----------------------TEEEEEETT
T ss_pred E-----------------EEEEcCcCCceEEEEec---------CCCC-----------------------Cceeeeccc
Confidence 5 77888999999999998 7764 489999999
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
++|++||+++.+...... .
T Consensus 192 ~~v~iwd~~~~~~~~~~~-------------------------------------------------------------~ 210 (344)
T 4gqb_B 192 NRILLWDTRCPKPASQIG-------------------------------------------------------------C 210 (344)
T ss_dssp SCEEEEETTSSSCEEECC--------------------------------------------------------------
T ss_pred cccccccccccceeeeee-------------------------------------------------------------c
Confidence 999999988632111000 0
Q ss_pred ecCCCCeEEEEEcCC-CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcE
Q 007489 272 SKASRKIICSTISNS-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRI 348 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~-g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i 348 (601)
..+...+.+++|+|+ +++|++ +.|+.|++||++. +..+ ..+.+|...|++++|+|++ ++|++|+.|++|
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~---~~~~-----~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS---TSCV-----LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CC-----EEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC---CcEE-----EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 112356889999985 567777 6899999999986 4444 3456788899999999998 579999999999
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCCceE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~~~~ 411 (601)
+|||+.+++++ .+.+ |...|++++|||+++ +|++++.||+|++|++.+...
T Consensus 283 ~vwd~~~~~~~-~~~~-----------H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 283 AVLDSSLSELF-RSQA-----------HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECTTCCEEE-EECC-----------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEECCCCcEE-EEcC-----------CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999988765 4555 999999999999986 677999999999999987643
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.3e-39 Score=306.88 Aligned_cols=280 Identities=21% Similarity=0.245 Sum_probs=226.7
Q ss_pred CEEeeecCCcEEEEECCC-----CceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhc
Q 007489 1 MLYSGSSDGYIRSWDAKL-----GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~ 74 (601)
+|++|+.|++|++||+.. +..+..+. +|...|.+++|+|+| +|++|+.|++|++||+.+++.+..+
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~ 103 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFK--------GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEe--------CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE
Confidence 489999999999999864 34566777 899999999999999 9999999999999999999999999
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
.+|...|.+++|+|++++|++|+.|++|++||+.... ...+.+|...|.++++.
T Consensus 104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~------------------~~~~~~h~~~v~~~~~~-------- 157 (319)
T 3frx_A 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC------------------LATLLGHNDWVSQVRVV-------- 157 (319)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE------------------EEEECCCSSCEEEEEEC--------
T ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------------EEEEeccCCcEEEEEEc--------
Confidence 9999999999999999999999999999999997543 56778899999999997
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|+.+ ...++..+++++.|+.|++||+.+..
T Consensus 158 -~~~~------------------~~~~~~~l~s~~~d~~i~~wd~~~~~------------------------------- 187 (319)
T 3frx_A 158 -PNEK------------------ADDDSVTIISAGNDKMVKAWNLNQFQ------------------------------- 187 (319)
T ss_dssp -CC------------------------CCEEEEEETTSCEEEEETTTTE-------------------------------
T ss_pred -cCCC------------------CCCCccEEEEEeCCCEEEEEECCcch-------------------------------
Confidence 5432 00112389999999999999987521
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~ 313 (601)
.......|...|.+++|+|+|++|++ +.|+.|++||+.. +..+.
T Consensus 188 --------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---~~~~~ 232 (319)
T 3frx_A 188 --------------------------------IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---KKAMY 232 (319)
T ss_dssp --------------------------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT---TEEEE
T ss_pred --------------------------------hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEE
Confidence 11122345688999999999999999 6899999999985 44432
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
.+. +...+.+++|+|++.+|++++.+ .+++|++..+..+..+..... .....+...+.+++|||||++|+
T Consensus 233 ~~~------~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 233 TLS------AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFA---GYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp EEE------CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCT---TCCGGGCCCEEEEEECTTSSEEE
T ss_pred Eec------CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccc---ccccCcCcceeEEEECCCCCEEE
Confidence 221 23579999999999999988755 599999988777766654210 00112567899999999999999
Q ss_pred EEecCCeEEEEEcCCc
Q 007489 394 AVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 394 s~~~dg~i~iwd~~~~ 409 (601)
+|+.||.|+|||+.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998764
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.4e-39 Score=309.95 Aligned_cols=291 Identities=17% Similarity=0.193 Sum_probs=222.3
Q ss_pred CEEeeecCCcEEEEECCCC-------ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh
Q 007489 1 MLYSGSSDGYIRSWDAKLG-------YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ 72 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~ 72 (601)
+||||+.|++|+|||+.++ .....+. +|...|++++|+|++ +|++|+.|++|++||+.+++.+.
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--------~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~ 112 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--------GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK 112 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--------CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhc--------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 4899999999999998753 3455565 899999999999999 89999999999999999999999
Q ss_pred hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCC
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
.+.+|...|.+++|+|++++|++++.|++|++||+..... ........|...|.+++|+
T Consensus 113 ~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~~~~~~~v~~~~~~------ 171 (343)
T 2xzm_R 113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---------------FSSAEKENHSDWVSCVRYS------ 171 (343)
T ss_dssp EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---------------EECCTTTSCSSCEEEEEEC------
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---------------eeeecccCCCceeeeeeec------
Confidence 9999999999999999999999999999999999874321 0122334788999999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|++..... ......+|++++.|+.|++||...
T Consensus 172 ---~~~~~~~~--------------~~~~~~~l~s~~~d~~i~iwd~~~------------------------------- 203 (343)
T 2xzm_R 172 ---PIMKSANK--------------VQPFAPYFASVGWDGRLKVWNTNF------------------------------- 203 (343)
T ss_dssp ---CCCCSCSC--------------CCSSCCEEEEEETTSEEEEEETTT-------------------------------
T ss_pred ---cccccccc--------------cCCCCCEEEEEcCCCEEEEEcCCC-------------------------------
Confidence 65430000 001124899999999999999432
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
........|...|.+++|+|+|++|++ +.|+.|++||+... ...
T Consensus 204 ---------------------------------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~--~~~ 248 (343)
T 2xzm_R 204 ---------------------------------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL--TYP 248 (343)
T ss_dssp ---------------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC--SSC
T ss_pred ---------------------------------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC--ccc
Confidence 011122345678999999999999999 68999999999541 222
Q ss_pred eEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceee--eeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
.. .+ .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+............+|...|.+++|+|+|
T Consensus 249 ~~-----~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 249 QR-----EF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp SE-----EE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred ce-----ee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 11 11 123469999999999887755 57789999998776544 44321111111223488899999999999
Q ss_pred CEEEEEecCCeEEEEEcCCce
Q 007489 390 QWLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~ 410 (601)
++|++|+.||.|++|+++++.
T Consensus 322 ~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCEEEEETTSEEEEEEEEEEE
T ss_pred CeEEEecCCceEEEEEEEccC
Confidence 999999999999999987653
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.3e-38 Score=301.84 Aligned_cols=305 Identities=12% Similarity=0.126 Sum_probs=247.5
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc-----
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS----- 75 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~----- 75 (601)
|+++..++.+.+|+........... +|...|++++|+|++ .|++++ ||.|++||+.+++....+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~ 94 (337)
T 1gxr_A 24 QPVPFPPDALIGPGIPRHARQINTL--------NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL 94 (337)
T ss_dssp EECCCCTTSSSSTTCCSEEEEEEEE--------CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECS
T ss_pred EEeecCCCcEeccccCCccccceec--------cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccccc
Confidence 4555555566666544433333333 799999999999999 788888 9999999998876544433
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
.|...|.+++|+|++++|++++.|+.|++|++.++.. .....+..|...|.+++|+
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------------~~~~~~~~~~~~i~~~~~~--------- 150 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------------RIKAELTSSAPACYALAIS--------- 150 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------EEEEEEECSSSCEEEEEEC---------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------------ceeeecccCCCceEEEEEC---------
Confidence 6899999999999999999999999999999988651 1245567788999999998
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
|+++ .|++++.|+.|++||+.+..
T Consensus 151 ~~~~------------------------~l~~~~~dg~v~~~d~~~~~-------------------------------- 174 (337)
T 1gxr_A 151 PDSK------------------------VCFSCCSDGNIAVWDLHNQT-------------------------------- 174 (337)
T ss_dssp TTSS------------------------EEEEEETTSCEEEEETTTTE--------------------------------
T ss_pred CCCC------------------------EEEEEeCCCcEEEEeCCCCc--------------------------------
Confidence 8876 99999999999999987521
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.......+...+.+++|+|++++|++ +.++.+++|++.. +..+..
T Consensus 175 -------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~ 220 (337)
T 1gxr_A 175 -------------------------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQ 220 (337)
T ss_dssp -------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEE
T ss_pred -------------------------------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC---CceEee
Confidence 01111234578999999999999998 6899999999975 333211
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
..+...+.+++|+|++++|++++.++.|++||+.+++.. .+.. |...|.+++|+|++++|++
T Consensus 221 ------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~-----------~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 221 ------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL-----------HESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp ------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC-----------CSSCEEEEEECTTSSEEEE
T ss_pred ------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC-----------CccceeEEEECCCCCEEEE
Confidence 124568999999999999999999999999999877654 4444 8899999999999999999
Q ss_pred EecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 395 VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
++.||.|++||+.+++...... +...|.+++|+| ++++|++++.||.|++|++
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEec--CCCcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 9999999999999998764433 457899999999 9999999999999999997
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-38 Score=300.78 Aligned_cols=282 Identities=17% Similarity=0.187 Sum_probs=213.7
Q ss_pred CEEeeecCCcEEEEECCCC--ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc-------cch
Q 007489 1 MLYSGSSDGYIRSWDAKLG--YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-------GTL 70 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~-------~~~ 70 (601)
+||+|+.|++|++||+.++ +.+..+.. .+|...|++++|+|++ +|++|+.|+.|+|||+.. .++
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~------~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDE------TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECT------TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEec------CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccccee
Confidence 4899999999999999875 34444421 1499999999999999 999999999999999853 345
Q ss_pred hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 71 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
+..+.+|...|.+++|+|++++|++|+.|++|++||+..... .+.+...+.+|...|.+++|+
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~-------------~~~~~~~~~~h~~~v~~v~~~---- 162 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-------------EYECISVLQEHSQDVKHVIWH---- 162 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC-------------CCEEEEEECCCSSCEEEEEEC----
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC-------------CeEEEEEeccCCCceEEEEEC----
Confidence 667889999999999999999999999999999999954321 123356678899999999998
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|++. +|++++.|++|++|+.....
T Consensus 163 -----p~~~------------------------~l~s~s~D~~i~iW~~~~~~--------------------------- 186 (330)
T 2hes_X 163 -----PSEA------------------------LLASSSYDDTVRIWKDYDDD--------------------------- 186 (330)
T ss_dssp -----SSSS------------------------EEEEEETTSCEEEEEEETTE---------------------------
T ss_pred -----CCCC------------------------EEEEEcCCCeEEEEECCCCC---------------------------
Confidence 8886 99999999999999976410
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeecCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFELKKGK 307 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~~~ 307 (601)
. ........|...|.+++|+|+ +.+|++ +.|++|++|++....
T Consensus 187 ~----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 187 W----------------------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp E----------------------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred e----------------------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 0 011222346688999999998 677887 789999999997622
Q ss_pred C-CcceEEEeeecCCc-CccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc--eeeee-ccCcccccccCCCCCC-Cee
Q 007489 308 V-GQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTF-TPCREEHDREIQPSEP-PIT 381 (601)
Q Consensus 308 ~-~~~~~~~~~~~~~~-~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~--~~~~~-~~~~~~~~~~~~~~~~-~i~ 381 (601)
. ....|... ..+.. |...|.+++|++++ +|++++.||.|++||..+++ ..... .. |.. .|.
T Consensus 233 ~~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-----------h~~~~v~ 299 (330)
T 2hes_X 233 EDDQQEWVCE-AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALC-----------HGVYEIN 299 (330)
T ss_dssp TTSCEEEEEE-EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCT-----------TTTSCEE
T ss_pred ccccceeEEe-eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccc-----------cccceEE
Confidence 1 12222222 23333 78899999999765 89999999999999987764 23222 33 666 899
Q ss_pred EEEEcc--CCCEEEEEecCCeEEEEEcCC
Q 007489 382 KMFTSS--DGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 382 ~l~~sp--d~~~las~~~dg~i~iwd~~~ 408 (601)
+++|+| ++++||+|+.||.|+||+++.
T Consensus 300 ~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 300 VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999 789999999999999999864
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-38 Score=305.90 Aligned_cols=324 Identities=11% Similarity=0.090 Sum_probs=225.7
Q ss_pred EEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee------CCeEEEEEeccCcCCC
Q 007489 41 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS------DGQVILYKASCESIGP 114 (601)
Q Consensus 41 ~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~vw~~~~~~~~~ 114 (601)
..+.+.+++.++.++.+.....|++.... ..+|...|.+++|+|||++|++|+. |+.|++|+..++....
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred cCCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 34455666666666777888999886433 3579999999999999999999997 7789999887665311
Q ss_pred CCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeE
Q 007489 115 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 194 (601)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v 194 (601)
. .......|...|.+++|+ |++ .+++++.|+.|
T Consensus 85 ~-------------~~~~~~~~~~~V~~~~~s---------~d~-------------------------~~l~~s~dg~v 117 (357)
T 4g56_B 85 S-------------LCTAGVQTEAGVTDVAWV---------SEK-------------------------GILVASDSGAV 117 (357)
T ss_dssp G-------------GCSEEEECSSCEEEEEEE---------TTT-------------------------EEEEEETTSCE
T ss_pred e-------------EecccCCCCCCEEEEEEc---------CCC-------------------------CEEEEECCCEE
Confidence 0 123345688899999998 776 56678889999
Q ss_pred EEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecC
Q 007489 195 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 274 (601)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (601)
++||+.+.+..... ......|
T Consensus 118 ~lWd~~~~~~~~~~-----------------------------------------------------------~~~~~~h 138 (357)
T 4g56_B 118 ELWEILEKESLLVN-----------------------------------------------------------KFAKYEH 138 (357)
T ss_dssp EEC--------CCC-----------------------------------------------------------CEEECCC
T ss_pred EEeeccccceeEEE-----------------------------------------------------------eeccCCC
Confidence 99998763211110 0112245
Q ss_pred CCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCC-eEEEEecCCcEEEEE
Q 007489 275 SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVD 352 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~-~l~~~~~dg~i~vwd 352 (601)
...|.+++|+|++++|++ +.++.|++||+.. +..+ ..+..|...|++++|+|++. ++++++.||.|++||
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~---~~~~-----~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVL-----KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTT---TEEE-----EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCC---CcEE-----EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 688999999999999998 6899999999975 4443 45567889999999999875 789999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 431 (601)
+.+++....+.... +...+++++|+|+ +.+||+|+.|+.|++||+.+++....+.. |...|++++|+|
T Consensus 211 ~~~~~~~~~~~~~~---------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp- 279 (357)
T 4g56_B 211 TRKPKPATRIDFCA---------SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSY- 279 (357)
T ss_dssp TTSSSCBCBCCCTT---------CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECS-
T ss_pred CCCCceeeeeeecc---------ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcC-
Confidence 99888776655422 6788999999997 56899999999999999999988767664 557899999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeCCC
Q 007489 432 NN-NVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDFGR 506 (601)
Q Consensus 432 ~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~~~ 506 (601)
++ ++|++++.|++|+|||++++++. ...+|.+.|.+++|+|. .+..+... .+..+.++++..
T Consensus 280 ~~~~~lasgs~D~~i~iwd~~~~~~~------------~~~~H~~~V~~vafsP~-d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 280 HSSPFLASISEDCTVAVLDADFSEVF------------RDLSHRDFVTGVAWSPL-DHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSSCCEEEEETTSCEEEECTTSCEEE------------EECCCSSCEEEEEECSS-STTEEEEEETTSCEEEEECC-
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcEe------------EECCCCCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCC
Confidence 65 68999999999999999988742 23479999999999995 24455444 456688888865
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=304.60 Aligned_cols=297 Identities=13% Similarity=0.142 Sum_probs=249.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+|...|++++|+|++ +|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 108 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC- 108 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-
Confidence 899999999999999 999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC--
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD-- 191 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-- 191 (601)
...+. |...+.+++|+ |+++ .+++++.+
T Consensus 109 ----------------~~~~~-~~~~v~~~~~~---------~~~~------------------------~l~~~~~~~~ 138 (369)
T 3zwl_B 109 ----------------VATWK-SPVPVKRVEFS---------PCGN------------------------YFLAILDNVM 138 (369)
T ss_dssp ----------------EEEEE-CSSCEEEEEEC---------TTSS------------------------EEEEEECCBT
T ss_pred ----------------EEEee-cCCCeEEEEEc---------cCCC------------------------EEEEecCCcc
Confidence 33444 78899999998 8886 99999998
Q ss_pred ---CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 192 ---TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 192 ---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.|.+|++............ ... .+.
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~-------------------------~~~--------------------------~~~ 167 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKV-------------------------SEE--------------------------PIH 167 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEE-------------------------CSS--------------------------CSE
T ss_pred CCCCEEEEEEecCCccceeeccc-------------------------ccc--------------------------eee
Confidence 99999998864322111100 000 011
Q ss_pred EEE-ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 269 QVK-SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 269 ~~~-~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
.+. ......+.+++|+|++++|++ +.++.|++|++.. ....+ ..+..|...|.+++|+|++++|++++.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN--NYEYV-----DSIDLHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT--TTEEE-----EEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC--CcEeE-----EEEecCCCceeEEEECCCCCEEEEecCCc
Confidence 111 111238999999999999998 6889999999975 12222 33455778999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC--------------eEEEEEcCCceEE
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG--------------DVYIFNLEIQRQH 412 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg--------------~i~iwd~~~~~~~ 412 (601)
.|++||+.+++.+..+. +...+..++|+|+++++++++.++ .+++||+.+++..
T Consensus 241 ~i~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 241 NSFLVDVSTLQVLKKYE------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp EEEEEETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred eEEEEECCCCceeeeec------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 99999999999888887 567899999999999999999988 8999999999988
Q ss_pred EEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 413 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 413 ~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
..+.. |...|++++|+| ++++|++++.||.|++|+++.+.
T Consensus 309 ~~~~~-~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 309 GRVQG-HFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEC-CSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred hheec-ccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 77765 557999999999 99999999999999999998764
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-37 Score=313.84 Aligned_cols=319 Identities=16% Similarity=0.224 Sum_probs=253.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+|++|+.||+|++||+.+++.+..+. +|...|++++|+|++.|++|+.||+|++||+.+++.+..+.+|.+.
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~--------~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~ 205 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 205 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEe--------CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCc
Confidence 48999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred eEEEEEe--CCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCc------cccceeEEecCccccccceeEEEeeccccCC
Q 007489 81 VNALAAA--PSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS------EVIKKWIYVGSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 81 V~~l~~s--~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
|.+++|+ +++++|++|+.|+.|++||+.+............ ...........+.+|...+.++.
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 277 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-------- 277 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--------
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--------
Confidence 9999999 5789999999999999999988653211100000 00000111334566777777764
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
+++. .+++++.|+.|++||+.+..
T Consensus 278 ---~~~~------------------------~l~~~~~d~~i~vwd~~~~~----------------------------- 301 (464)
T 3v7d_B 278 ---GHGN------------------------IVVSGSYDNTLIVWDVAQMK----------------------------- 301 (464)
T ss_dssp ---EETT------------------------EEEEEETTSCEEEEETTTTE-----------------------------
T ss_pred ---CCCC------------------------EEEEEeCCCeEEEEECCCCc-----------------------------
Confidence 4554 99999999999999987521
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
.......|...|.+++|+|+++++++ +.|+.|++|++.. +..
T Consensus 302 ----------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~ 344 (464)
T 3v7d_B 302 ----------------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN---GEL 344 (464)
T ss_dssp ----------------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT---TEE
T ss_pred ----------------------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CcE
Confidence 11112235678999999999999998 6899999999975 444
Q ss_pred eEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
+ ..+.+|...|.+++|+ +++|++++.||.|++||+.+++....+. +...+..++|+|++++
T Consensus 345 ~-----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 345 M-----YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH------------HTNLSAITTFYVSDNI 405 (464)
T ss_dssp E-----EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE------------CTTCCCEEEEEECSSE
T ss_pred E-----EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec------------CCCCccEEEEEeCCCE
Confidence 3 4456788899999997 5799999999999999999887666554 5677888999999999
Q ss_pred EEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 392 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 392 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
|++++ ||.|++||+.+++........+...|++++|+. ..++++++.||.+.+|-+
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEEEe
Confidence 99998 899999999999987654445668999999974 456666677877666543
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.6e-38 Score=340.63 Aligned_cols=356 Identities=11% Similarity=0.106 Sum_probs=283.9
Q ss_pred ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee
Q 007489 20 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
+..+.+. +|...|.+++|+|+| .|++++.||.|+|||+.+++.+..+.+|.+.|.+++|+|++++|++++.
T Consensus 4 ~~~~~~~--------~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 4 DIKKTFS--------NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp CCEEEEE--------EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred ccceeee--------cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC
Confidence 3456666 899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
||.|++|++.++.. ...+..|...|.+++|+ |+++
T Consensus 76 dg~i~vw~~~~~~~-----------------~~~~~~~~~~v~~~~~s---------~~~~------------------- 110 (814)
T 3mkq_A 76 DFRIRVFNYNTGEK-----------------VVDFEAHPDYIRSIAVH---------PTKP------------------- 110 (814)
T ss_dssp TSEEEEEETTTCCE-----------------EEEEECCSSCEEEEEEC---------SSSS-------------------
T ss_pred CCeEEEEECCCCcE-----------------EEEEecCCCCEEEEEEe---------CCCC-------------------
Confidence 99999999998774 66778899999999998 8886
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC-CeEEEEEeC--CeeEEeeccccCCcccC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH-TSLLLVQYS--CRLDILSVRLENNVESR 255 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~--~~i~i~~~~~~~~~~~~ 255 (601)
.|++++.|+.|++|++.+....... ...+...+.+++|+| ++..+++++ +.+.+|++....
T Consensus 111 -----~l~~~~~dg~i~vw~~~~~~~~~~~------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----- 174 (814)
T 3mkq_A 111 -----YVLSGSDDLTVKLWNWENNWALEQT------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----- 174 (814)
T ss_dssp -----EEEEEETTSEEEEEEGGGTSEEEEE------EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----
T ss_pred -----EEEEEcCCCEEEEEECCCCceEEEE------EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence 9999999999999998764211100 011125678889999 777666654 899999987543
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcC--CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEE
Q 007489 256 SSSGGHASTSLLVQVKSKASRKIICSTISN--SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 332 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 332 (601)
....+...+...+.+++|+| ++.++++ +.++.|++|++.. +..+ ..+..|...|.+++|
T Consensus 175 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~-----~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 175 ----------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---KSCV-----ATLEGHMSNVSFAVF 236 (814)
T ss_dssp ----------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT---TEEE-----EEEECCSSCEEEEEE
T ss_pred ----------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC---CcEE-----EEEcCCCCCEEEEEE
Confidence 23345555558899999999 8999988 6899999999875 3333 334567789999999
Q ss_pred ccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC--EEEEEecCCeEEEEEcCCce
Q 007489 333 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 333 s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~--~las~~~dg~i~iwd~~~~~ 410 (601)
+|++++|++++.||.|++||+.+++.+..+.. +...+.+++|+|+++ ++++++ ++.+.+|++....
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-----------GLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDE 304 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECC-----------SSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-----------CCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCC
Confidence 99999999999999999999999999998887 788999999999987 455555 6668889875432
Q ss_pred EEEEee------------------------------------------ccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 411 QHWFIS------------------------------------------RLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 411 ~~~~~~------------------------------------------~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
....+. ..+...+.+++|+| ++++|++++ |+.+.+|
T Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~ 382 (814)
T 3mkq_A 305 PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIY 382 (814)
T ss_dssp CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEE
T ss_pred ceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEE
Confidence 111100 11223578999999 999999988 8999999
Q ss_pred EcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE
Q 007489 449 DVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY 494 (601)
Q Consensus 449 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 494 (601)
++..... .+.+.+.+++|+|+ ++.+.+.
T Consensus 383 ~~~~~~~----------------~~~~~i~~~~~spd--g~~la~~ 410 (814)
T 3mkq_A 383 TALAWRN----------------KAFGKCQDFVWGPD--SNSYALI 410 (814)
T ss_dssp ETTTTEE----------------EEEEECSEEEECTT--SSCEEEE
T ss_pred ECccccc----------------cCCCceEEEEEeCC--CCeEEEE
Confidence 9764321 23467889999998 3444444
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-37 Score=296.28 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=229.3
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||.|++||+.+++....+. +|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+.+|..
T Consensus 37 ~l~s~~~dg~i~iw~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 108 (312)
T 4ery_A 37 WLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEeeCCCeEEEEeCCCcccchhhc--------cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC
Confidence 48999999999999999999998887 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++|+|++++|++|+.|+.|++||+.+++. ...+..|...|.+++|+ |+++
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------~~~~~~~~~~v~~~~~~---------~~~~ 162 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------------LKTLPAHSDPVSAVHFN---------RDGS 162 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------EEEECCCSSCEEEEEEC---------TTSS
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------------EEEecCCCCcEEEEEEc---------CCCC
Confidence 999999999999999999999999999988764 56778899999999998 8876
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.|++++.|+.|++||+.+.+
T Consensus 163 ------------------------~l~~~~~d~~i~~wd~~~~~------------------------------------ 182 (312)
T 4ery_A 163 ------------------------LIVSSSYDGLCRIWDTASGQ------------------------------------ 182 (312)
T ss_dssp ------------------------EEEEEETTSCEEEEETTTCC------------------------------------
T ss_pred ------------------------EEEEEeCCCcEEEEECCCCc------------------------------------
Confidence 99999999999999987522
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+..+...+...+.+++|+|++++|++ +.++.|++|++.. +..+ .
T Consensus 183 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~-----~ 228 (312)
T 4ery_A 183 --------------------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCL-----K 228 (312)
T ss_dssp --------------------------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT---TEEE-----E
T ss_pred --------------------------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEE-----E
Confidence 111222233467889999999999998 6899999999975 3333 2
Q ss_pred cCCcCccc---eeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 319 QLPRKLQF---AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 319 ~~~~~~~~---v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
.+..|... +......+++.+|++|+.||.|++||+.+++.+..+.+ |...|.+++|+|++++|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----------h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-----------HTDVVISTACHPTENIIASA 297 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC-----------CSSCEEEEEECSSSSEEEEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc-----------cCCcEEEEeecCcCCceEEE
Confidence 22333322 22333446888999999999999999999999999988 89999999999999999998
Q ss_pred e--cCCeEEEEEcC
Q 007489 396 N--CFGDVYIFNLE 407 (601)
Q Consensus 396 ~--~dg~i~iwd~~ 407 (601)
+ .|+.|++|+.+
T Consensus 298 ~~~~d~~i~~W~~d 311 (312)
T 4ery_A 298 ALENDKTIKLWKSD 311 (312)
T ss_dssp ECTTTCCEEEEECC
T ss_pred EccCCccEEEecCC
Confidence 7 69999999864
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-38 Score=311.08 Aligned_cols=319 Identities=17% Similarity=0.180 Sum_probs=250.8
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT 137 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 137 (601)
..+..|+..+..+..++.+|.+.|++++|+|++++|+||+.|++|++||+.++.. ...+..|.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------~~~~~~h~ 108 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------THAIKLHC 108 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------EEEEECCC
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------ceEEecCC
Confidence 3455688877788889999999999999999999999999999999999988764 66778899
Q ss_pred cceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcc
Q 007489 138 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 217 (601)
Q Consensus 138 ~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 217 (601)
..|.+++|+ |+++ +|++|+.|+.+++|++..........
T Consensus 109 ~~v~~~~~s---------~~g~------------------------~las~~~d~~v~iw~~~~~~~~~~~~-------- 147 (380)
T 3iz6_a 109 PWVMECAFA---------PNGQ------------------------SVACGGLDSACSIFNLSSQADRDGNM-------- 147 (380)
T ss_dssp TTCCCCEEC---------TTSS------------------------EEEECCSSSCCEEEECCCCSSCCCSS--------
T ss_pred CCEEEEEEC---------CCCC------------------------EEEEeeCCCcEEEEECCCCccccCCc--------
Confidence 999999998 8887 99999999999999987532110000
Q ss_pred ceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcC
Q 007489 218 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDH 295 (601)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~ 295 (601)
.+......|...+.+++|+|++ ..|++ +.|
T Consensus 148 ------------------------------------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D 179 (380)
T 3iz6_a 148 ------------------------------------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179 (380)
T ss_dssp ------------------------------------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT
T ss_pred ------------------------------------------------cceeeccCCCcceEEEEEecCCCCEEEEECCC
Confidence 0001112345678888888864 45666 799
Q ss_pred CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcC-CCceeeeeccCcccccccC
Q 007489 296 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREI 373 (601)
Q Consensus 296 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~ 373 (601)
++|++||+.. +..+..+......+|...|.+++|++ ++.+|++|+.|+.|++||+. .++.+..+.+
T Consensus 180 ~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--------- 247 (380)
T 3iz6_a 180 QTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--------- 247 (380)
T ss_dssp SCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---------
T ss_pred CcEEEEEcCC---CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---------
Confidence 9999999986 44432222233367888999999987 88999999999999999997 4567788887
Q ss_pred CCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCC------CceeEEEecCCCCCEEEEEeCCCeEEE
Q 007489 374 QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG------ASVTAAGFPPQNNNVLIITTSSNQVYV 447 (601)
Q Consensus 374 ~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~------~~v~~l~~~p~~~~~l~~~~~dg~v~v 447 (601)
|...|++++|+|++++|++|+.||+|+|||+.+++....+..... ..|++++|+| ++++|++++.||.|++
T Consensus 248 --h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 248 --HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYV 324 (380)
T ss_dssp --CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEE
T ss_pred --cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEE
Confidence 899999999999999999999999999999999988766543221 2489999999 9999999999999999
Q ss_pred EEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc-CceEEEEeCCC
Q 007489 448 FDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS-ARAMCVIDFGR 506 (601)
Q Consensus 448 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~-~~~~~~~~~~~ 506 (601)
||+..++...- +.....+|.+.|.+++|+|+ +..+...+ +..+.++++..
T Consensus 325 wd~~~~~~~~~-------~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 325 WDTLLAEMVLN-------LGTLQNSHEGRISCLGLSSD--GSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EETTTCCEEEE-------ECCSCSSCCCCCCEEEECSS--SSEEEEECTTSCEEEEECCS
T ss_pred EECCCCceEEE-------EecccCCCCCceEEEEECCC--CCEEEEeeCCCCEEEEecCC
Confidence 99987764210 11123579999999999998 44555443 45567777754
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-37 Score=329.91 Aligned_cols=286 Identities=15% Similarity=0.177 Sum_probs=236.4
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccc-----hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEe
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT-----LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 107 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~ 107 (601)
+|.+.|++|+|+|++ .|+||+.|++|++||+.+.. ....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 899999999999876 79999999999999997643 34568899999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEE
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
.++.. ...+.+|...|.+++|+ |+++ .|++
T Consensus 460 ~~~~~-----------------~~~~~~h~~~v~~~~~s---------~~~~------------------------~l~s 489 (694)
T 3dm0_A 460 AAGVS-----------------TRRFVGHTKDVLSVAFS---------LDNR------------------------QIVS 489 (694)
T ss_dssp TTTEE-----------------EEEEECCSSCEEEEEEC---------TTSS------------------------CEEE
T ss_pred CCCcc-----------------eeEEeCCCCCEEEEEEe---------CCCC------------------------EEEE
Confidence 88764 66778999999999998 8886 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
|+.|++|++||....... .+.
T Consensus 490 ~s~D~~i~iwd~~~~~~~---------------------------------------~~~-------------------- 510 (694)
T 3dm0_A 490 ASRDRTIKLWNTLGECKY---------------------------------------TIS-------------------- 510 (694)
T ss_dssp EETTSCEEEECTTSCEEE---------------------------------------EEC--------------------
T ss_pred EeCCCEEEEEECCCCcce---------------------------------------eec--------------------
Confidence 999999999997531000 000
Q ss_pred EEEEecCCCCeEEEEEcCCC--CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec
Q 007489 268 VQVKSKASRKIICSTISNSG--MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH 344 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g--~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~ 344 (601)
.....|...|.+++|+|++ ..+++ +.|+.|++||+.. .... ..+.+|...|++++|+|++++|++++.
T Consensus 511 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~---~~~~-----~~~~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 511 -EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN---CKLR-----STLAGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp -SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---CCEE-----EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC---CcEE-----EEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 0001245779999999987 46777 7999999999975 3332 456788899999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCC----
Q 007489 345 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG---- 420 (601)
Q Consensus 345 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~---- 420 (601)
||.|++||+.+++.+..+. +...|.+++|+|++.+|++++. +.|+|||+.+++....+.....
T Consensus 582 Dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLE------------ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp TSBCEEEETTTTEEEECCB------------CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----
T ss_pred CCeEEEEECCCCceEEEec------------CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccc
Confidence 9999999999998887776 4567999999999998888764 5599999999887665542110
Q ss_pred --------------CceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 421 --------------ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 421 --------------~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
..+++++|+| ++++|++++.||.|+||++..
T Consensus 649 ~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 649 KADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ------------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEeccC
Confidence 1378999999 999999999999999999863
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9e-37 Score=294.88 Aligned_cols=325 Identities=14% Similarity=0.094 Sum_probs=260.1
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCC
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP 114 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~ 114 (601)
|...|.+++|+||| .++++..++.+.+|+...........+|...|.+++|+|++++|++++ ||.|++|++.++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 67889999999999 777887777777777665544444457999999999999999999999 9999999998765311
Q ss_pred CCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeE
Q 007489 115 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 194 (601)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v 194 (601)
.. .......|...|.+++|+ |+++ .|++++.|+.|
T Consensus 87 ~~------------~~~~~~~~~~~v~~~~~~---------~~~~------------------------~l~~~~~d~~i 121 (337)
T 1gxr_A 87 PV------------SQLDCLNRDNYIRSCKLL---------PDGC------------------------TLIVGGEASTL 121 (337)
T ss_dssp CS------------EEEECSCTTSBEEEEEEC---------TTSS------------------------EEEEEESSSEE
T ss_pred ee------------ecccccCCCCcEEEEEEc---------CCCC------------------------EEEEEcCCCcE
Confidence 00 011122688999999998 8886 99999999999
Q ss_pred EEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecC
Q 007489 195 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 274 (601)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (601)
++||+.+... ........+
T Consensus 122 ~~~d~~~~~~-------------------------------------------------------------~~~~~~~~~ 140 (337)
T 1gxr_A 122 SIWDLAAPTP-------------------------------------------------------------RIKAELTSS 140 (337)
T ss_dssp EEEECCCC---------------------------------------------------------------EEEEEEECS
T ss_pred EEEECCCCCc-------------------------------------------------------------ceeeecccC
Confidence 9999875210 111222334
Q ss_pred CCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc
Q 007489 275 SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~ 353 (601)
...+.+++|+|+++++++ +.++.|++|++.. +..+ ..+..|...+.+++|+|++++|++++.||.|++||+
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~---~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHN---QTLV-----RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ccee-----eeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 577999999999999988 6899999999975 3332 344567889999999999999999999999999999
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCC
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 433 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 433 (601)
.+++.+..+. +...+.+++|+|++++|++++.++.|++||+.+.+.. .+. .|...|.+++|+| ++
T Consensus 213 ~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~-~~ 277 (337)
T 1gxr_A 213 REGRQLQQHD------------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAY-CG 277 (337)
T ss_dssp TTTEEEEEEE------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC-CCSSCEEEEEECT-TS
T ss_pred CCCceEeeec------------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc-CCccceeEEEECC-CC
Confidence 9998887775 6778999999999999999999999999999988765 333 3557899999999 99
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc-CceEEEEeC
Q 007489 434 NVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS-ARAMCVIDF 504 (601)
Q Consensus 434 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~-~~~~~~~~~ 504 (601)
++|++++.||.|++||+.+++.. ....|...+.+++|+|+ +..++..+ +..+.++++
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~------------~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASI------------FQSKESSSVLSCDISVD--DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEE------------EEEECSSCEEEEEECTT--SCEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEE------------EEecCCCcEEEEEECCC--CCEEEEecCCCeEEEEEE
Confidence 99999999999999999988742 12357889999999998 45555553 444666654
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9e-38 Score=307.70 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=225.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCC----------CCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL----------GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT 69 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~ 69 (601)
+||+|+ |++++||++.+|+.+..+....... ...+...|.+++|+|+| +|++|+.|+.|++||+.+++
T Consensus 78 ~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~ 156 (393)
T 1erj_A 78 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156 (393)
T ss_dssp EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 367766 7899999999999988876211000 00123359999999999 99999999999999999999
Q ss_pred hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 70 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 70 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++. ... ..+...+.+++++
T Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----------------~~~-~~~~~~v~~~~~~--- 215 (393)
T 1erj_A 157 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----------------SLT-LSIEDGVTTVAVS--- 215 (393)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------EEE-EECSSCEEEEEEC---
T ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-----------------EEE-EEcCCCcEEEEEE---
Confidence 9999999999999999999999999999999999999988763 222 2356778999997
Q ss_pred cCCCCCC-cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 150 SREDPLP-EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 150 ~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
| +++ +|++|+.|+.|++||+.+.......
T Consensus 216 ------~~~~~------------------------~l~~~s~d~~v~iwd~~~~~~~~~~-------------------- 245 (393)
T 1erj_A 216 ------PGDGK------------------------YIAAGSLDRAVRVWDSETGFLVERL-------------------- 245 (393)
T ss_dssp ------STTCC------------------------EEEEEETTSCEEEEETTTCCEEEEE--------------------
T ss_pred ------CCCCC------------------------EEEEEcCCCcEEEEECCCCcEEEee--------------------
Confidence 6 565 9999999999999998752210000
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCC
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK 307 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~ 307 (601)
. ........|...|.+++|+|+|++|++ +.|+.|++|++....
T Consensus 246 ------------------~------------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 246 ------------------D------------------SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp ------------------C------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred ------------------c------------------ccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 0 000011245678999999999999999 689999999997521
Q ss_pred CCcceE----EEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEE
Q 007489 308 VGQGEW----IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 308 ~~~~~~----~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
...... ......+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+ |...|.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----------h~~~v~~v 358 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----------HRNSVISV 358 (393)
T ss_dssp -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEE
T ss_pred CcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----------CCCCEEEE
Confidence 100000 000123457788999999999999999999999999999999999999988 89999999
Q ss_pred EEcc------CCCEEEEEecCCeEEEEEcCCc
Q 007489 384 FTSS------DGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 384 ~~sp------d~~~las~~~dg~i~iwd~~~~ 409 (601)
+|++ ++++||+|+.||.|+||++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9986 6889999999999999998654
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9e-37 Score=306.52 Aligned_cols=304 Identities=15% Similarity=0.236 Sum_probs=257.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+|++|+.||+|++||+.+++.+..+. +|...|++++|+ +..|++|+.||.|++||+.+++.+..+.+|...
T Consensus 131 ~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 201 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTST 201 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEEECCCcEEEEECCCCcEEEEEc--------CCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence 48999999999999999999999887 899999999998 349999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
|.+++|+ ++.+++|+.||.|++||+.+++. ...+..|...|.++++. +
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-----------------~~~~~~~~~~v~~~~~~-----------~-- 249 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQC-----------------LHVLMGHVAAVRCVQYD-----------G-- 249 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCE-----------------EEEEECCSSCEEEEEEC-----------S--
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcE-----------------EEEEcCCcccEEEEEEC-----------C--
Confidence 9999996 67899999999999999998764 66778899999999863 3
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
..+++|+.|+.|++||+.+..
T Consensus 250 ----------------------~~l~~~~~dg~i~iwd~~~~~------------------------------------- 270 (445)
T 2ovr_B 250 ----------------------RRVVSGAYDFMVKVWDPETET------------------------------------- 270 (445)
T ss_dssp ----------------------SCEEEEETTSCEEEEEGGGTE-------------------------------------
T ss_pred ----------------------CEEEEEcCCCEEEEEECCCCc-------------------------------------
Confidence 289999999999999987521
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeec
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
.+ .....|...+.++++ ++.++++ +.|+.|++|++.. +..+ ..
T Consensus 271 -------------------------~~-~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~---~~~~-----~~ 314 (445)
T 2ovr_B 271 -------------------------CL-HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET---GNCI-----HT 314 (445)
T ss_dssp -------------------------EE-EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT---CCEE-----EE
T ss_pred -------------------------Ee-EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC---CCEE-----EE
Confidence 11 111234577888888 7788888 6899999999986 4443 33
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
+..|...+.++.+ ++++|++++.||.|++||+.+++.+..+..+.. |...|++++| ++++|++|+.||
T Consensus 315 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~v~~~~~--~~~~l~s~~~dg 382 (445)
T 2ovr_B 315 LTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK--------HQSAVTCLQF--NKNFVITSSDDG 382 (445)
T ss_dssp ECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTS--------CSSCEEEEEE--CSSEEEEEETTS
T ss_pred EcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCC--------CCCCEEEEEE--CCCEEEEEeCCC
Confidence 4567777887776 567999999999999999999999888876432 7889999999 468999999999
Q ss_pred eEEEEEcCCceEEEEee----ccCCCceeEEEecCCCCCEEEEEeCCCe----EEEEEcCCC
Q 007489 400 DVYIFNLEIQRQHWFIS----RLEGASVTAAGFPPQNNNVLIITTSSNQ----VYVFDVEAK 453 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~----~~~~~~v~~l~~~p~~~~~l~~~~~dg~----v~vwd~~~~ 453 (601)
.|++||+.+++....+. ..+...|++++|+| ++.+|++++.||+ |.|||+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999998877763 23457899999999 9999999999997 999999763
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.9e-38 Score=307.23 Aligned_cols=296 Identities=14% Similarity=0.144 Sum_probs=245.4
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc--hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
.|...|++++|+|++ +|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++|++.+++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 688999999999999 89999999999999999887 888899999999999999999999999999999999998765
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
. .....+..|...|.+++|+ |+++ +|++++.|
T Consensus 86 ~---------------~~~~~~~~~~~~v~~~~~~---------~~~~------------------------~l~~~~~d 117 (372)
T 1k8k_C 86 W---------------KPTLVILRINRAARCVRWA---------PNEK------------------------KFAVGSGS 117 (372)
T ss_dssp E---------------EEEEECCCCSSCEEEEEEC---------TTSS------------------------EEEEEETT
T ss_pred e---------------eeeEEeecCCCceeEEEEC---------CCCC------------------------EEEEEeCC
Confidence 2 1233446788999999998 8876 99999999
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
+.|++||+...... .....+.
T Consensus 118 ~~v~i~d~~~~~~~-----------------------------------------------------------~~~~~~~ 138 (372)
T 1k8k_C 118 RVISICYFEQENDW-----------------------------------------------------------WVCKHIK 138 (372)
T ss_dssp SSEEEEEEETTTTE-----------------------------------------------------------EEEEEEC
T ss_pred CEEEEEEecCCCcc-----------------------------------------------------------eeeeeee
Confidence 99999998752210 0112222
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCC---------------CCcceEEEeeecCCcCccceeEEEEccC
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK---------------VGQGEWIINKRQLPRKLQFAHSMIFSYD 335 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~v~~i~~s~d 335 (601)
..|...|.+++|+|++++|++ +.++.+++|++.... .+..+ ..+..|...+.+++|+|+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM-----FESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE-----EECCCCSSCEEEEEECSS
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhhe-----EecCCCCCeEEEEEECCC
Confidence 345678999999999999998 689999999975210 12222 445578889999999999
Q ss_pred CCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC--ceEE-
Q 007489 336 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI--QRQH- 412 (601)
Q Consensus 336 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~--~~~~- 412 (601)
+++|++++.||.|++||+.+++.+..+.. |...|.+++|+|++++|+++ .|+.|++|++.. ++..
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLAS-----------ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEEC-----------SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEcc-----------CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 99999999999999999999999999987 88899999999999999888 899999999987 4210
Q ss_pred -------------------------------------EEeeccCCCceeEEEecCCCC---CEEEEEeCCCeEEEEEcCC
Q 007489 413 -------------------------------------WFISRLEGASVTAAGFPPQNN---NVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 413 -------------------------------------~~~~~~~~~~v~~l~~~p~~~---~~l~~~~~dg~v~vwd~~~ 452 (601)
..+...|...|++++|.+.++ .+|++++.||.|++||+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 122235668999999774266 8999999999999999987
Q ss_pred CC
Q 007489 453 KQ 454 (601)
Q Consensus 453 ~~ 454 (601)
++
T Consensus 362 ~~ 363 (372)
T 1k8k_C 362 LE 363 (372)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-37 Score=306.65 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=240.6
Q ss_pred EECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhcc--ccccceEEEEEeC-
Q 007489 14 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAP- 88 (601)
Q Consensus 14 wd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~s~- 88 (601)
|++.+.+....+. +|...|++++|+|++ +|++|+.||.|+|||+.+++....+. +|...|.+++|+|
T Consensus 58 ~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 58 RSLKSYKLHRTAS--------PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp HHHTTCEEEEEEC--------CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT
T ss_pred ccccccceEEecc--------CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC
Confidence 4445566677776 899999999999998 89999999999999999888776665 6999999999999
Q ss_pred CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCc
Q 007489 89 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 168 (601)
Q Consensus 89 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 168 (601)
++++|++++.|+.|++||+.+... ........|...|.+++|+ |+++
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~v~~~~~~---------~~~~--------- 176 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSGSVI---------------QVFAKTDSWDYWYCCVDVS---------VSRQ--------- 176 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEE---------------EEEECCCCSSCCEEEEEEE---------TTTT---------
T ss_pred CCCEEEEEeCCCEEEEEECCCCce---------------EEEeccCCCCCCeEEEEEC---------CCCC---------
Confidence 789999999999999999986431 1122233455889999999 8886
Q ss_pred cccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccc
Q 007489 169 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL 248 (601)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~ 248 (601)
.|++++.|+.|++||+.. .
T Consensus 177 ---------------~l~~~~~d~~i~i~d~~~-~--------------------------------------------- 195 (383)
T 3ei3_B 177 ---------------MLATGDSTGRLLLLGLDG-H--------------------------------------------- 195 (383)
T ss_dssp ---------------EEEEEETTSEEEEEETTS-C---------------------------------------------
T ss_pred ---------------EEEEECCCCCEEEEECCC-C---------------------------------------------
Confidence 999999999999999842 0
Q ss_pred cCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccc
Q 007489 249 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQF 326 (601)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (601)
.+ .....|...|.+++|+|+++ ++++ +.|+.|++||+.......... ..+ .|...
T Consensus 196 -----------------~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~-~~~~~ 252 (383)
T 3ei3_B 196 -----------------EI-FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI----AEM-PHEKP 252 (383)
T ss_dssp -----------------EE-EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE----EEE-ECSSC
T ss_pred -----------------EE-EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE----EEe-cCCCc
Confidence 11 11124568899999999998 7777 689999999998633222221 111 47789
Q ss_pred eeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccC------CCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 327 AHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREI------QPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 327 v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
|.+++|+| ++++|++++.|+.|++||+.+++....+..+........ -.....+..++|+|++++ +++.||
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC
Confidence 99999999 999999999999999999998887777765321100000 001234455677777776 777999
Q ss_pred eEEEEEcCCceEEEEeecc-CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 400 DVYIFNLEIQRQHWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.|+|||+.+++....+... +...+..++|+| ++++|++++ |+.|++||+++
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999999999988777654 345677889999 999999997 99999999975
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3e-36 Score=304.71 Aligned_cols=330 Identities=15% Similarity=0.156 Sum_probs=258.5
Q ss_pred eEEEEEeccCCCCCCCceEE-EEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC
Q 007489 21 EIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 99 (601)
Q Consensus 21 ~~~~~~~~~~~~~~~h~~~V-~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 99 (601)
....+. +|...| .++.|. .+.|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.|
T Consensus 113 ~~~~l~--------~h~~~v~~~~~~~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLR--------GHMTSVITCLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD 182 (464)
T ss_dssp EEEEEE--------CCSSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETT
T ss_pred ceEEEc--------CCCCCcEEEEEEC-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCC
Confidence 455666 787774 666653 2399999999999999999999999999999999999999988 99999999
Q ss_pred CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccccccccccc
Q 007489 100 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 100 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
|+|++||+.+++. ...+.+|...|.++++.+. ++++
T Consensus 183 g~i~vwd~~~~~~-----------------~~~~~~h~~~v~~l~~~~~-------~~~~-------------------- 218 (464)
T 3v7d_B 183 RTVRVWDIKKGCC-----------------THVFEGHNSTVRCLDIVEY-------KNIK-------------------- 218 (464)
T ss_dssp SCEEEEETTTTEE-----------------EEEECCCSSCEEEEEEEES-------SSCE--------------------
T ss_pred CCEEEEECCCCcE-----------------EEEECCCCCccEEEEEecC-------CCCC--------------------
Confidence 9999999998764 6677889999999999711 2333
Q ss_pred CCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCC
Q 007489 180 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 259 (601)
Q Consensus 180 ~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 259 (601)
.+++++.|+.|++||+.+............ ...+...++
T Consensus 219 ----~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~----------------------------- 257 (464)
T 3v7d_B 219 ----YIVTGSRDNTLHVWKLPKESSVPDHGEEHD--------YPLVFHTPE----------------------------- 257 (464)
T ss_dssp ----EEEEEETTSCEEEEECCCCCCC------CC--------SSEEESCGG-----------------------------
T ss_pred ----EEEEEcCCCcEEEeeCCCCcccccccccCC--------cceEeeccC-----------------------------
Confidence 999999999999999987543322111000 000000000
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCe
Q 007489 260 GHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 338 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~ 338 (601)
...........|...+.++ +++++++++ +.|+.|++||+.. +..+ ..+.+|...|.+++|+|++++
T Consensus 258 ---~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~---~~~~-----~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 258 ---ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ---MKCL-----YILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp ---GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT---TEEE-----EEECCCSSCEEEEEEETTTTE
T ss_pred ---CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC---CcEE-----EEecCCCCCEEEEEEcCCCCE
Confidence 0012333444556677766 577888888 6899999999975 4443 345678889999999999999
Q ss_pred EEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 339 LIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 339 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
|++|+.||.|++||+.+++++.++.+ |...|.+++|+ +++|++++.||.|++||+.++.......
T Consensus 325 l~sg~~dg~i~vwd~~~~~~~~~~~~-----------h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-- 389 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENGELMYTLQG-----------HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-- 389 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECC-----------CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEeC-----------CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--
Confidence 99999999999999999999999988 89999999996 6899999999999999999987755543
Q ss_pred CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 419 EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+...+..++|+| ++.+|++++ ||.|++||++++++. ...+..|...|.+++|+.+
T Consensus 390 ~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~----------~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 390 HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLV----------HANILKDADQIWSVNFKGK 444 (464)
T ss_dssp CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEE----------ESCTTTTCSEEEEEEEETT
T ss_pred CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEE----------ehhhccCCCcEEEEEecCC
Confidence 445788889999 999999888 999999999998852 1225567899999999743
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=309.56 Aligned_cols=312 Identities=15% Similarity=0.140 Sum_probs=243.4
Q ss_pred CEEeeecCCcEEEEEC----CCCc------eEEEEEeccCC--CCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc
Q 007489 1 MLYSGSSDGYIRSWDA----KLGY------EIYRITVGLGG--LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH 67 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~----~~~~------~~~~~~~~~~~--~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~ 67 (601)
+||+|+.||.|++||+ .+++ ....+...... ...+|...|++++|+|++ +|++++.||.|++|| .+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~ 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KT 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TT
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CC
Confidence 4899999999999999 8888 45555521110 011278899999999999 999999999999999 56
Q ss_pred cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccc--------
Q 007489 68 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD-------- 139 (601)
Q Consensus 68 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------- 139 (601)
++.+..+.+|...|.+++|+|++++|++++.|+.|++|++.++.. ...+..+...
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-----------------MQHFELKETGGSSINAEN 201 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-----------------EEEECCC-----------
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-----------------EEEeeccccCccceeecc
Confidence 888889999999999999999999999999999999999988763 3444444444
Q ss_pred -------eeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCC
Q 007489 140 -------VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICP 212 (601)
Q Consensus 140 -------v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~ 212 (601)
+.+++|+ |++ .+++++.|+.|++||+..........
T Consensus 202 ~~~~~~~~~~~~~~---------~~~-------------------------~~~~~~~~g~i~~~d~~~~~~~~~~~--- 244 (425)
T 1r5m_A 202 HSGDGSLGVDVEWV---------DDD-------------------------KFVIPGPKGAIFVYQITEKTPTGKLI--- 244 (425)
T ss_dssp ----CCCBSCCEEE---------ETT-------------------------EEEEECGGGCEEEEETTCSSCSEEEC---
T ss_pred ccCCcceeeEEEEc---------CCC-------------------------EEEEEcCCCeEEEEEcCCCceeeeec---
Confidence 6777776 443 79999999999999998754322111
Q ss_pred CCCccceeeeeccccCCCeEEEEEe--CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 007489 213 APQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 290 (601)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 290 (601)
.+...+..++|+|++.+++++ ++.+.+|++..... +.. ...+...+.+++|+|++ ++
T Consensus 245 ----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------~~~-~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 245 ----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS---------------QNC-FYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp ----CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC---------------SEE-ECCCSSCEEEEEEETTT-EE
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc---------------ceE-ecCCCccEEEEEECCCC-EE
Confidence 122467788899988766655 48899999876542 222 23467889999999999 66
Q ss_pred EE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc------------
Q 007489 291 AY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE------------ 357 (601)
Q Consensus 291 ~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~------------ 357 (601)
++ +.++.|++|++.. +..+ ..+..|...+.+++|+|++++|++++.||.|++||+.+++
T Consensus 304 ~~~~~d~~i~i~d~~~---~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQ---NTLL-----ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EEEETTSEEEEEETTT---TEEE-----EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred EEEeCCCcEEEEECCC---CcEe-----EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 66 7999999999975 3333 2334567789999999999999999999999999998887
Q ss_pred --------eeeeeccCcccccccCCCCCC--CeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 358 --------LLHTFTPCREEHDREIQPSEP--PITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 358 --------~~~~~~~~~~~~~~~~~~~~~--~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
.+..+.. |.. .|++++|+|++++|++++.||.|++|+++
T Consensus 376 ~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 376 ILNPLPIPLYASYQS-----------SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---CEECCEEEEECC-----------TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCcccchhhhhhcC-----------cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7777776 655 99999999999999999999999999986
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=287.48 Aligned_cols=288 Identities=17% Similarity=0.145 Sum_probs=242.0
Q ss_pred ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee
Q 007489 20 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
+.++++. +|...|++++| |++ +|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.
T Consensus 9 ~~~~~l~--------~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 9 QLSATLK--------GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp EEEEEEC--------CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred HHHHHhh--------CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence 5666776 89999999999 777 9999999999999999999988999999999999999999999999999
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
|+.|++|++...... .....+..|...|.++++. +
T Consensus 80 dg~i~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~~~-----------~-------------------- 114 (313)
T 3odt_A 80 DTMINGVPLFATSGE--------------DPLYTLIGHQGNVCSLSFQ-----------D-------------------- 114 (313)
T ss_dssp TSCEEEEETTCCTTS--------------CC-CEECCCSSCEEEEEEE-----------T--------------------
T ss_pred CCeEEEEEeeecCCC--------------CcccchhhcccCEEEEEec-----------C--------------------
Confidence 999999998775421 1145567899999999874 2
Q ss_pred cCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 179 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 179 ~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
..+++++.|+.|++||...
T Consensus 115 ----~~l~~~~~d~~i~~~d~~~--------------------------------------------------------- 133 (313)
T 3odt_A 115 ----GVVISGSWDKTAKVWKEGS--------------------------------------------------------- 133 (313)
T ss_dssp ----TEEEEEETTSEEEEEETTE---------------------------------------------------------
T ss_pred ----CEEEEEeCCCCEEEEcCCc---------------------------------------------------------
Confidence 2899999999999999221
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 336 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~ 336 (601)
.......+...+.+++++| ++.++++ +.++.+++|+... .. ......+...+.+++|+|++
T Consensus 134 --------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~----~~~~~~~~~~i~~~~~~~~~ 196 (313)
T 3odt_A 134 --------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-----VI----KTFSGIHNDVVRHLAVVDDG 196 (313)
T ss_dssp --------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----EE----EEECSSCSSCEEEEEEEETT
T ss_pred --------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----eE----EEEeccCcccEEEEEEcCCC
Confidence 1112223467899999988 8888888 7899999999432 21 12222377889999999999
Q ss_pred CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 337 SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
. +++++.||.|++||+.+++.+..+.. |...|++++|+|++ .|++++.||.|++||+.+++....+.
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTGDVLRTYEG-----------HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred e-EEEccCCCeEEEEECCchhhhhhhhc-----------CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe
Confidence 8 99999999999999999999999988 89999999999999 58899999999999999999887776
Q ss_pred ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 417 RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 417 ~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
. |...|++++|+| +++ +++++.||.|++||++++++
T Consensus 264 ~-~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 264 L-PAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp C-SSSCEEEEEECT-TSC-EEEEETTSCEEEEESCGGGC
T ss_pred c-cCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCCCCce
Confidence 4 456899999999 887 67799999999999998764
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-37 Score=310.02 Aligned_cols=297 Identities=11% Similarity=0.098 Sum_probs=225.7
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchh--hhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEecc
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL--QAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~ 109 (601)
+|...|+||+|+|.+ .||+|+.||.|+|||+.+++.. ..+.+|.+.|++|+|+| ++++|++|+.||+|++||+.+
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 688899999999954 8999999999999999877544 45568999999999998 789999999999999999987
Q ss_pred CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
+.. ........+...+.+++|+ |+++ +|++|+
T Consensus 197 ~~~---------------~~~~~~~~~~~~~~~~~~~---------~~~~------------------------~l~~g~ 228 (435)
T 4e54_B 197 NIL---------------RVFASSDTINIWFCSLDVS---------ASSR------------------------MVVTGD 228 (435)
T ss_dssp CEE---------------EEEECCSSCSCCCCCEEEE---------TTTT------------------------EEEEEC
T ss_pred Cce---------------eEEeccCCCCccEEEEEEC---------CCCC------------------------EEEEEe
Confidence 542 0111222334457788888 8886 999999
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
.|+.|++||++.... ..
T Consensus 229 ~dg~i~~wd~~~~~~-~~-------------------------------------------------------------- 245 (435)
T 4e54_B 229 NVGNVILLNMDGKEL-WN-------------------------------------------------------------- 245 (435)
T ss_dssp SSSBEEEEESSSCBC-CC--------------------------------------------------------------
T ss_pred CCCcEeeeccCccee-EE--------------------------------------------------------------
Confidence 999999999864110 00
Q ss_pred EEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCc
Q 007489 270 VKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 347 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~ 347 (601)
...|...|.+++|+|++. ++++ +.|+.|++||++.......+ ....+|...|++++|+|++++|++++.||.
T Consensus 246 -~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~spdg~~l~s~~~D~~ 319 (435)
T 4e54_B 246 -LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLPHRHPVNAACFSPDGARLLTTDQKSE 319 (435)
T ss_dssp -SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred -EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeeeccccccceeECCCCCeeEEEcCCCE
Confidence 012457799999999986 6666 68999999999863222222 334678889999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe------------cCCeEEEEEcCCceEEEEe
Q 007489 348 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN------------CFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 348 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~------------~dg~i~iwd~~~~~~~~~~ 415 (601)
|++||+.+++....+..+..... ....+..+.|+|++.+++++. .++.|++||..+++....+
T Consensus 320 i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 320 IRVYSASQWDCPLGLIPHPHRHF-----QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp EEEEESSSSSSEEEECCCCCCCC-----SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred EEEEECCCCccceEEeccccccc-----ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 99999999887777765321110 111233456777777666654 3357999999999988887
Q ss_pred eccCCCceeEE-EecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 416 SRLEGASVTAA-GFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 416 ~~~~~~~v~~l-~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
...|...|.++ +|+| ++.+|++|+ |+.|+||+++.++.
T Consensus 395 ~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 395 YDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred eCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence 76677788887 6999 999998876 88999999998763
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-38 Score=311.94 Aligned_cols=303 Identities=15% Similarity=0.158 Sum_probs=239.1
Q ss_pred CceEEEEEEEeeCC--eEEEE----------cCCCcEEEeeCCccc---hhhhccccccceEEEEEeCCCCEEEEEeeCC
Q 007489 36 PELCIWSLLSLRCG--TLVSA----------DSTGSVQFWDSRHGT---LLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 100 (601)
Q Consensus 36 h~~~V~~v~~s~~g--~l~s~----------~~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 100 (601)
+...|.+++|+|+| .|++| +.|+.|+|||+.+++ ++..+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 45678999999998 68888 889999999999876 33334 5899999999999999999999999
Q ss_pred eEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc-ccccccCCCCcccccccccccc
Q 007489 101 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE-DKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 101 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
.|++|++...... ......+..|...|.+++|+ |+ +.
T Consensus 90 ~v~vw~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~---------~~~~~-------------------- 127 (416)
T 2pm9_A 90 SLELYSTNEANNA-------------INSMARFSNHSSSVKTVKFN---------AKQDN-------------------- 127 (416)
T ss_dssp CEEEECCSSTTSC-------------CCEEEECCCSSSCCCEEEEC---------SSSTT--------------------
T ss_pred eEEEeeccccccc-------------ccchhhccCCccceEEEEEc---------CCCCC--------------------
Confidence 9999999873210 00256778899999999998 77 54
Q ss_pred CCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCC
Q 007489 180 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 259 (601)
Q Consensus 180 ~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 259 (601)
+|++++.|+.|++||+.+......... ...+
T Consensus 128 ----~l~s~~~dg~v~iwd~~~~~~~~~~~~--------------------------------~~~~------------- 158 (416)
T 2pm9_A 128 ----VLASGGNNGEIFIWDMNKCTESPSNYT--------------------------------PLTP------------- 158 (416)
T ss_dssp ----BEEEECSSSCEEBCBTTTTSSCTTTCC--------------------------------CBCC-------------
T ss_pred ----EEEEEcCCCeEEEEECCCCcccccccc--------------------------------cccc-------------
Confidence 999999999999999986431100000 0000
Q ss_pred CCCCcceEEEEEecCCCCeEEEEEcCC-CCEEEE-EcCCccEEEEeecCCCCcceEEEee-ecCCcCccceeEEEEccCC
Q 007489 260 GHASTSLLVQVKSKASRKIICSTISNS-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDS 336 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~d~ 336 (601)
.....+...|.+++|+|+ +.+|++ +.++.|++|++.. +..+..+.. ....+|...+.+++|+|++
T Consensus 159 ---------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 159 ---------GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp ---------CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ---------ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCC
Confidence 001123577999999999 688888 6899999999976 333321111 0112236789999999997
Q ss_pred -CeEEEEecCC---cEEEEEcCCC-ceeeeec-cCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCc
Q 007489 337 -SQLIIAGHDR---RIYVVDVSSS-ELLHTFT-PCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 337 -~~l~~~~~dg---~i~vwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~ 409 (601)
.+|++++.|+ .|++||+.++ +++..+. + |...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQG-----------HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC-----------CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC-----------ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 6899999998 9999999886 5666666 5 889999999999 9999999999999999999999
Q ss_pred eEEEEeeccCCCceeEEEecCCCC-CEEEEEeCCCeEEEEEcCCCCc
Q 007489 410 RQHWFISRLEGASVTAAGFPPQNN-NVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 410 ~~~~~~~~~~~~~v~~l~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+....+.. |...|++++|+| ++ .+|++++.|+.|++||+.+...
T Consensus 296 ~~~~~~~~-~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 296 EQLSQFPA-RGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CEEEEEEC-SSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ccceeecC-CCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence 98877774 557899999999 87 8999999999999999987653
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=319.96 Aligned_cols=312 Identities=9% Similarity=0.074 Sum_probs=222.6
Q ss_pred EEeeecCCcEEEEECCCCceE----EEEEeccCCCCCCCceEEEEEEEeeC------C-eEEEEcCCCcEEEeeCCccch
Q 007489 2 LYSGSSDGYIRSWDAKLGYEI----YRITVGLGGLGSGPELCIWSLLSLRC------G-TLVSADSTGSVQFWDSRHGTL 70 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~s~~------g-~l~s~~~dg~i~vwd~~~~~~ 70 (601)
||+|+.|++|+|||+.++++. ..+. +|.+.|++|+|+|+ + +||+++.||+|+|||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~--------~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIV--------HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEE--------ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEE--------ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 678999999999999887653 3344 67888999999996 4 899999999999999987642
Q ss_pred -----------hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccc
Q 007489 71 -----------LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 139 (601)
Q Consensus 71 -----------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 139 (601)
...+.+|...|++++|+++ ..|++|+.||+|++||+.++.. ....+.+|...
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~----------------~~~~~~~H~~~ 310 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV----------------PSFYDQVHDSY 310 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS----------------CSEEEECSSSC
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC----------------ceEEeeccccc
Confidence 2357789999999999986 4899999999999999987642 02346789999
Q ss_pred eeEEE--eeccccCCCCCCcc-cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCc
Q 007489 140 VRALT--VAVPISREDPLPED-KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 216 (601)
Q Consensus 140 v~~l~--~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 216 (601)
|.+++ ++ |++ . +|++|+.|++|++||+++.....
T Consensus 311 V~sv~~~~s---------~~g~~------------------------~laS~S~D~tvklWD~~~~~~~~---------- 347 (524)
T 2j04_B 311 ILSVSTAYS---------DFEDT------------------------VVSTVAVDGYFYIFNPKDIATTK---------- 347 (524)
T ss_dssp EEEEEEECC---------TTSCC------------------------EEEEEETTSEEEEECGGGHHHHC----------
T ss_pred EEEEEEEcC---------CCCCe------------------------EEEEeccCCeEEEEECCCCCccc----------
Confidence 99994 44 665 4 89999999999999987632100
Q ss_pred cceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec-CCCCeEEEEEcCCCCEEEE-Ec
Q 007489 217 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK-ASRKIICSTISNSGMLFAY-SD 294 (601)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~-~~ 294 (601)
.+... ....+.+++|+|+++.+++ +.
T Consensus 348 ----------------------------------------------------~~~~~~~~~~v~~v~fsp~~~~l~s~~~ 375 (524)
T 2j04_B 348 ----------------------------------------------------TTVSRFRGSNLVPVVYCPQIYSYIYSDG 375 (524)
T ss_dssp ----------------------------------------------------EEEEECSCCSCCCEEEETTTTEEEEECS
T ss_pred ----------------------------------------------------ccccccccCcccceEeCCCcCeEEEeCC
Confidence 00000 0134788999999998888 68
Q ss_pred CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCC
Q 007489 295 HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ 374 (601)
Q Consensus 295 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 374 (601)
+++|++|+++. +..+ ..+.+|...|++++|+|++++|++|+.||+|++||+... .+..+.... ..
T Consensus 376 d~tv~lwd~~~---~~~~-----~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~------~~ 440 (524)
T 2j04_B 376 ASSLRAVPSRA---AFAV-----HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSS------AT 440 (524)
T ss_dssp SSEEEEEETTC---TTCC-----EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------------
T ss_pred CCcEEEEECcc---cccc-----eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCc------cc
Confidence 88999999976 4433 234468889999999999999999999999999998643 332221100 00
Q ss_pred CCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCceeEEEecCCCC---CEEEEEeCCCeEEEEEc
Q 007489 375 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTAAGFPPQNN---NVLIITTSSNQVYVFDV 450 (601)
Q Consensus 375 ~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~~~~~dg~v~vwd~ 450 (601)
.+...|..++|+|+++.+. ...+ +.+|+.. ++.....+.. |...|.+++|+| ++ .+|++|+.||.|+||++
T Consensus 441 ~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~g-h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 441 QKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDA-HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp CCCCEEEECBCCSSSCEEE-ECCC--CCCCC--------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEEC
T ss_pred eeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecC-CCceEEEEECCC-CCCccHHHHhhccCceEEEEEc
Confidence 0223578999999999653 2222 3344332 3444434443 557999999999 75 49999999999999999
Q ss_pred CCC
Q 007489 451 EAK 453 (601)
Q Consensus 451 ~~~ 453 (601)
...
T Consensus 516 ~~~ 518 (524)
T 2j04_B 516 SLE 518 (524)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 59
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.8e-37 Score=296.69 Aligned_cols=290 Identities=11% Similarity=0.078 Sum_probs=222.0
Q ss_pred ceEEEEEEEeeCC-eEEEEcCC-------CcEEEeeCCccchh----------hhccccccceEEEEEeCCCCEEEEE--
Q 007489 37 ELCIWSLLSLRCG-TLVSADST-------GSVQFWDSRHGTLL----------QAHSFHKGDVNALAAAPSHNRVFST-- 96 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~d-------g~i~vwd~~~~~~~----------~~~~~h~~~V~~l~~s~~~~~l~s~-- 96 (601)
.-+|++++|+||| .|++|+.+ +.|++|++..+... ..+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 3479999999999 78887653 35999998755422 1355788888888765 5667665
Q ss_pred ---------eeCCeEEEEEeccCcCCCCCCCCCccccceeEEe--cCccccccceeEEEeeccccCCCCCCcccccccCC
Q 007489 97 ---------GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV--GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 165 (601)
Q Consensus 97 ---------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~ 165 (601)
+.|+.+++|++...... ...+... .....+...+++++|+ |||+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~fS---------pDg~------ 146 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQ----------LEFLTSVDFDASTNADDYTKLVYIS---------REGT------ 146 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTE----------EEEEEEECSSCCCCTTCCEEEEEEC---------TTSS------
T ss_pred CCccEEEEecCCCcEEEEEecCCCce----------EEEeeeeceeecCCcccCEEEEEEc---------CCCC------
Confidence 45788999998765420 0011111 1123345568899998 9987
Q ss_pred CCccccccccccccCCCCEE--EEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEE
Q 007489 166 REKPIDFSYHKWAHLGVPML--ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDI 243 (601)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l--~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i 243 (601)
++ ++++.|++|++||+.+..
T Consensus 147 ------------------~la~as~~~d~~i~iwd~~~~~---------------------------------------- 168 (365)
T 4h5i_A 147 ------------------VAAIASSKVPAIMRIIDPSDLT---------------------------------------- 168 (365)
T ss_dssp ------------------CEEEEESCSSCEEEEEETTTTE----------------------------------------
T ss_pred ------------------EEEEEECCCCCEEEEeECCCCc----------------------------------------
Confidence 54 456689999999987521
Q ss_pred eeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcC
Q 007489 244 LSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRK 323 (601)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (601)
.+..+ .+...|.+++|+|||++++++.++.+.+|+... +..+ .......|
T Consensus 169 ----------------------~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~---~~~~---~~~~~~~~ 218 (365)
T 4h5i_A 169 ----------------------EKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVT---GSCI---ARKTDFDK 218 (365)
T ss_dssp ----------------------EEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTT---CCEE---EEECCCCT
T ss_pred ----------------------EEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEecc---Ccce---eeeecCCC
Confidence 12222 345779999999999999998888888888765 3332 22445667
Q ss_pred ccceeEEEEccCCCeEEEEecCC----cEEEEEcCCCce----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDR----RIYVVDVSSSEL----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg----~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
...+.+++|+|+++++++++.++ .+++|++..... ...+.. |...|++++|||||++||+|
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-----------RFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-----------SCSCEEEEEECTTSCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-----------CCCCeEeEEECCCCCceEEE
Confidence 88899999999999999999887 588899866543 234555 88899999999999999999
Q ss_pred ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 396 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 396 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+.|+.|+|||+.+++....+...|...|++++|+| |+++||+++.|++|+|||+...
T Consensus 288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred cCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999988777667888999999999 9999999999999999999754
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-36 Score=299.48 Aligned_cols=321 Identities=15% Similarity=0.136 Sum_probs=243.9
Q ss_pred CCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccc------hhhhccccccceEEEEEeCC----C---CEEEEEeeCC
Q 007489 34 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT------LLQAHSFHKGDVNALAAAPS----H---NRVFSTGSDG 100 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~------~~~~~~~h~~~V~~l~~s~~----~---~~l~s~~~dg 100 (601)
.+|...|++++|+| ..|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + ++|++++.|+
T Consensus 13 ~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 13 KAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 38999999999999 899999999999999999887 67888899999999999999 9 9999999999
Q ss_pred eEEEEEeccCcCCCCCCCCCccccceeEEecCcccc-----ccceeEEEeeccccCCCCCCcccccccCCCCcccccccc
Q 007489 101 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH-----THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175 (601)
Q Consensus 101 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 175 (601)
.|++|++.++.... -.....+..| ...|.+++|++... |+++
T Consensus 92 ~i~iw~~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~---------------- 138 (397)
T 1sq9_A 92 DLLFYRITREDETK------------KVIFEKLDLLDSDMKKHSFWALKWGASND-----RLLS---------------- 138 (397)
T ss_dssp CEEEEEEEECTTTC------------CEEEEEECCSCTTGGGSCEEEEEEECCC---------C----------------
T ss_pred CEEEEEccCCcccc------------cccceeecccccccCCCcEEEEEEeeccC-----CCCc----------------
Confidence 99999999876210 0112345566 58899999962111 3343
Q ss_pred ccccCCCCE-EEEecCCCeEEEEeccc------cCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccc
Q 007489 176 KWAHLGVPM-LISAGDDTKLFAYCANE------FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL 248 (601)
Q Consensus 176 ~~~~~~~~~-l~s~~~d~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~ 248 (601)
. |++++.|+.|++||+.. ..... +.+.+.+...
T Consensus 139 --------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~------------ 178 (397)
T 1sq9_A 139 --------HRLVATDVKGTTYIWKFHPFADESNSLTLN--------------------WSPTLELQGT------------ 178 (397)
T ss_dssp --------EEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------------CCCEEEEEEE------------
T ss_pred --------eEEEEEeCCCcEEEEeCCccccccccceee--------------------ccCcceeeee------------
Confidence 8 99999999999999986 22111 1111111000
Q ss_pred cCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcC---c
Q 007489 249 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRK---L 324 (601)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~---~ 324 (601)
......+...|.+++|+|++ ++++ +.++.|++|++.. +..+..+. ....| .
T Consensus 179 -------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~--~~~~h~~~~ 233 (397)
T 1sq9_A 179 -------------------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFE--SQHSMINNS 233 (397)
T ss_dssp -------------------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEE--CCC---CCC
T ss_pred -------------------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC---CceeEEEe--ccccccccC
Confidence 00012345779999999999 8888 6889999999975 33332111 11226 7
Q ss_pred cceeEEEEccCCCeEEEEecC---CcEEEEEcCCCceeeeeccCccccc--ccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 325 QFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSELLHTFTPCREEHD--REIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
..|.+++|+|++++|++++.| |.|++||+.+++.+..+........ .....|...|.+++|+|++++|++++.||
T Consensus 234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 789999999999999999999 9999999999988888775110000 00001577899999999999999999999
Q ss_pred eEEEEEcCCceEEEEee------cc--------------CCCceeEEEecCCCC----------CEEEEEeCCCeEEEEE
Q 007489 400 DVYIFNLEIQRQHWFIS------RL--------------EGASVTAAGFPPQNN----------NVLIITTSSNQVYVFD 449 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~l~~~p~~~----------~~l~~~~~dg~v~vwd 449 (601)
.|+|||+.+++....+. .+ |...|++++|+| ++ ++|++++.||.|++|+
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccccceEEEecCCCcEEEEE
Confidence 99999999999888877 33 167899999999 87 7999999999999999
Q ss_pred cCCCC
Q 007489 450 VEAKQ 454 (601)
Q Consensus 450 ~~~~~ 454 (601)
+++++
T Consensus 393 ~~~g~ 397 (397)
T 1sq9_A 393 EAGGK 397 (397)
T ss_dssp EEC--
T ss_pred cCCCC
Confidence 98763
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-37 Score=306.49 Aligned_cols=296 Identities=13% Similarity=0.132 Sum_probs=226.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc--chhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG--TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
.|...|++++|+|+| +|++|+.|+.|++||+.++ +++..+.+|...|.+++|+|++++|++++.|+.|++||+.++.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 366789999999999 8999999999999999988 7889999999999999999999999999999999999998865
Q ss_pred CCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 112 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
. +.....+..|...|.+++|+ |+++ .|++++.|
T Consensus 89 ~--------------~~~~~~~~~~~~~v~~~~~~---------~~~~------------------------~l~~~~~d 121 (377)
T 3dwl_C 89 T--------------WKQTLVLLRLNRAATFVRWS---------PNED------------------------KFAVGSGA 121 (377)
T ss_dssp C--------------CCCEEECCCCSSCEEEEECC---------TTSS------------------------CCEEEESS
T ss_pred c--------------eeeeeEecccCCceEEEEEC---------CCCC------------------------EEEEEecC
Confidence 1 11245667899999999998 8886 99999999
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
+.|++||+....... ....+.
T Consensus 122 ~~i~iwd~~~~~~~~-----------------------------------------------------------~~~~~~ 142 (377)
T 3dwl_C 122 RVISVCYFEQENDWW-----------------------------------------------------------VSKHLK 142 (377)
T ss_dssp SCEEECCC-----CC-----------------------------------------------------------CCEEEC
T ss_pred CeEEEEEECCcccce-----------------------------------------------------------eeeEee
Confidence 999999987632100 111222
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCc-----------ceEEEeeecCCcCccceeEEEEccCCCeE
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQ-----------GEWIINKRQLPRKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~i~~s~d~~~l 339 (601)
..|...|.+++|+|++++|++ +.|+.|++|++....... ..-.. ...+ .|...|.+++|+|++++|
T Consensus 143 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 143 RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV-CAEY-PSGGWVHAVGFSPSGNAL 220 (377)
T ss_dssp SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE-EECC-CCSSSEEEEEECTTSSCE
T ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhh-hhcc-cCCceEEEEEECCCCCEE
Confidence 235688999999999999998 689999999996321000 01111 1334 788899999999999999
Q ss_pred EEEecCCcEEEEEcCCCce----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE----
Q 007489 340 IIAGHDRRIYVVDVSSSEL----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ---- 411 (601)
Q Consensus 340 ~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~---- 411 (601)
++++.||.|++||+.+++. +..+.. |...|.+++|+|++++|++++.++.+ +|+......
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALITVKL-----------SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTR 288 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCCEEC-----------SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSB
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEeecC-----------CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEe
Confidence 9999999999999998887 777777 88999999999999999999877755 676542110
Q ss_pred -----------------------------------E------------EEeeccCCCceeEEEecCCCCC---EEEEEeC
Q 007489 412 -----------------------------------H------------WFISRLEGASVTAAGFPPQNNN---VLIITTS 441 (601)
Q Consensus 412 -----------------------------------~------------~~~~~~~~~~v~~l~~~p~~~~---~l~~~~~ 441 (601)
. ..+...|...|+++.+.+.++. .|++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~ 368 (377)
T 3dwl_C 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT 368 (377)
T ss_dssp CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET
T ss_pred eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC
Confidence 0 0011226678999997762333 6999999
Q ss_pred CCeEEEEEc
Q 007489 442 SNQVYVFDV 450 (601)
Q Consensus 442 dg~v~vwd~ 450 (601)
||.|++||+
T Consensus 369 Dg~i~iWdl 377 (377)
T 3dwl_C 369 DGRVVLWTL 377 (377)
T ss_dssp TSEEEEECC
T ss_pred CCcEEEecC
Confidence 999999986
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-35 Score=296.31 Aligned_cols=317 Identities=18% Similarity=0.235 Sum_probs=256.7
Q ss_pred CCceEE-EEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCI-WSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V-~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
+|.+.| .++ +++| .|++|+.||.|++||+.+++++..+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++.
T Consensus 116 ~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~ 191 (445)
T 2ovr_B 116 GHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC 191 (445)
T ss_dssp CSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE
T ss_pred ccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE
Confidence 788764 554 4567 99999999999999999999999999999999999998 67999999999999999998764
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
...+.+|...|.++++. + ..+++|+.|+
T Consensus 192 -----------------~~~~~~h~~~v~~~~~~-----------~------------------------~~l~s~s~dg 219 (445)
T 2ovr_B 192 -----------------IHTLYGHTSTVRCMHLH-----------E------------------------KRVVSGSRDA 219 (445)
T ss_dssp -----------------EEEECCCSSCEEEEEEE-----------T------------------------TEEEEEETTS
T ss_pred -----------------EEEECCCCCcEEEEEec-----------C------------------------CEEEEEeCCC
Confidence 66778899999999974 2 2899999999
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|++||+.+.+ ......
T Consensus 220 ~i~~wd~~~~~---------------------------------------------------------------~~~~~~ 236 (445)
T 2ovr_B 220 TLRVWDIETGQ---------------------------------------------------------------CLHVLM 236 (445)
T ss_dssp EEEEEESSSCC---------------------------------------------------------------EEEEEE
T ss_pred EEEEEECCCCc---------------------------------------------------------------EEEEEc
Confidence 99999987521 111122
Q ss_pred cCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEE
Q 007489 273 KASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vw 351 (601)
.|...+.++++ +++++++ +.++.|++|++.. +..+ ..+..|...|.+++| ++.++++++.||.|++|
T Consensus 237 ~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~---~~~~-----~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 237 GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET---ETCL-----HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG---TEEE-----EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC---CcEe-----EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 34577889888 6777777 7899999999986 4443 345677889999999 88999999999999999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc--CCCceeEEEec
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL--EGASVTAAGFP 429 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~~ 429 (601)
|+.+++.+..+.+ |...+.++.+ ++++|++++.||.|++||+.+++....+... |...|++++|+
T Consensus 305 d~~~~~~~~~~~~-----------~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 371 (445)
T 2ovr_B 305 DVETGNCIHTLTG-----------HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 371 (445)
T ss_dssp ETTTCCEEEEECC-----------CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred ECCCCCEEEEEcC-----------CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC
Confidence 9999999999987 8888988877 5779999999999999999999888777642 55789999995
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCce-----EEEEeC
Q 007489 430 PQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA-----MCVIDF 504 (601)
Q Consensus 430 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~-----~~~~~~ 504 (601)
+ ++|++++.||.|++||+.+++...-. ......+|.+.|.+++|+|+ +..+.+.+.++ +.++|+
T Consensus 372 ~---~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~--~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 372 K---NFVITSSDDGTVKLWDLKTGEFIRNL------VTLESGGSGGVVWRIRASNT--KLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp S---SEEEEEETTSEEEEEETTTCCEEEEE------EECTTGGGTCEEEEEEECSS--EEEEEEECSSSSSCCEEEEEEC
T ss_pred C---CEEEEEeCCCeEEEEECCCCceeeee------eccccCCCCceEEEEEecCC--EEEEEEcccCCCCccEEEEEEC
Confidence 4 79999999999999999988742200 00011467789999999998 44444544443 888888
Q ss_pred CC
Q 007489 505 GR 506 (601)
Q Consensus 505 ~~ 506 (601)
+.
T Consensus 441 ~~ 442 (445)
T 2ovr_B 441 DV 442 (445)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=294.07 Aligned_cols=294 Identities=12% Similarity=0.150 Sum_probs=230.3
Q ss_pred CCceEEEEEEEeeCC-eE-EEEcC---CCcEEEeeCCccchhhhcc-ccccceEEEEEeCC---CCEEEEEeeCCeEEEE
Q 007489 35 GPELCIWSLLSLRCG-TL-VSADS---TGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPS---HNRVFSTGSDGQVILY 105 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l-~s~~~---dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vw 105 (601)
+|...|++++|+|++ .+ ++|+. ||.|++||+.+++...... +|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 799999999999999 55 56665 9999999999887654433 79999999999998 6999999999999999
Q ss_pred EeccCc-CCCCCCCCCccccceeEEecCccccccceeEEEeec--cccCCCCCCcccccccCCCCccccccccccccCCC
Q 007489 106 KASCES-IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV--PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 182 (601)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (601)
++.++. . ...+..|...|.++++.+ .++ |+++
T Consensus 96 d~~~~~~~-----------------~~~~~~~~~~v~~~~~~~~~~~s-----~~~~----------------------- 130 (357)
T 3i2n_A 96 NLEAPEMP-----------------VYSVKGHKEIINAIDGIGGLGIG-----EGAP----------------------- 130 (357)
T ss_dssp CTTSCSSC-----------------SEEECCCSSCEEEEEEESGGGCC------CCC-----------------------
T ss_pred eCCCCCcc-----------------EEEEEecccceEEEeeccccccC-----CCcc-----------------------
Confidence 999876 3 456778999999997753 122 5665
Q ss_pred CEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCC
Q 007489 183 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 262 (601)
Q Consensus 183 ~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 262 (601)
.|++++.|+.|++||+....... ..+...
T Consensus 131 -~l~~~~~d~~i~vwd~~~~~~~~-----------------------------------~~~~~~--------------- 159 (357)
T 3i2n_A 131 -EIVTGSRDGTVKVWDPRQKDDPV-----------------------------------ANMEPV--------------- 159 (357)
T ss_dssp -EEEEEETTSCEEEECTTSCSSCS-----------------------------------EEECCC---------------
T ss_pred -EEEEEeCCCeEEEEeCCCCCCcc-----------------------------------eecccc---------------
Confidence 99999999999999988632100 000000
Q ss_pred CcceEEEEEecCCCCeEEEE----EcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc---
Q 007489 263 STSLLVQVKSKASRKIICST----ISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--- 334 (601)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~----~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--- 334 (601)
.......+.+++ |+|+++++++ +.++.|++|+++. +... ....+...|.+++|+|
T Consensus 160 --------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~------~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 160 --------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN---MALR------WETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp --------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT---TEEE------EEEECSSCEEEEEESCSSS
T ss_pred --------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc---Ccee------eecCCCCceEEEEcCCCCC
Confidence 000123577777 7899999998 6889999999985 3322 1234567899999999
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeec-----cCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEEEEcCC
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFT-----PCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~iwd~~~ 408 (601)
++.+|++++.||.|++||+.+++.+..+. . |...|++++|+|+++ +|++++.||.|++||+..
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA-----------HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC-----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC-----------CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 99999999999999999998777665554 5 899999999999999 899999999999999975
Q ss_pred ce-------------------EEEEeeccCCCceeEEEecCCCCCEEE-EEeCCCeEEEEEcCCCC
Q 007489 409 QR-------------------QHWFISRLEGASVTAAGFPPQNNNVLI-ITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 409 ~~-------------------~~~~~~~~~~~~v~~l~~~p~~~~~l~-~~~~dg~v~vwd~~~~~ 454 (601)
.. ....+.. |...|++++|+| ++++|+ +++.|+.|++||+.+.+
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTL-STQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEEC-CSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred CcccccccCCCCccccccccceeecccc-CCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 42 3334443 557899999999 999898 79999999999998754
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-36 Score=296.18 Aligned_cols=289 Identities=13% Similarity=0.157 Sum_probs=233.3
Q ss_pred CCceEEEEEEEeeC---C--eEEEEcCCCcEEEeeCCccchhhhccc-----cccceEEEEEeCC----CCEEEEEeeCC
Q 007489 35 GPELCIWSLLSLRC---G--TLVSADSTGSVQFWDSRHGTLLQAHSF-----HKGDVNALAAAPS----HNRVFSTGSDG 100 (601)
Q Consensus 35 ~h~~~V~~v~~s~~---g--~l~s~~~dg~i~vwd~~~~~~~~~~~~-----h~~~V~~l~~s~~----~~~l~s~~~dg 100 (601)
+|...|++++|+|+ + .+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++|+.||
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 79999999999984 3 677888888999999998888777664 5578999999998 67999999999
Q ss_pred eEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC-cccccccCCCCcccccccccccc
Q 007489 101 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP-EDKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 101 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
.|++||+.+++. ...+..|...|.+++|+ | ++.
T Consensus 96 ~i~v~d~~~~~~-----------------~~~~~~~~~~i~~~~~~---------~~~~~-------------------- 129 (366)
T 3k26_A 96 IIRIINPITMQC-----------------IKHYVGHGNAINELKFH---------PRDPN-------------------- 129 (366)
T ss_dssp EEEEECTTTCCE-----------------EEEEESCCSCEEEEEEC---------SSCTT--------------------
T ss_pred EEEEEEchhceE-----------------eeeecCCCCcEEEEEEC---------CCCCC--------------------
Confidence 999999988764 66778899999999998 7 665
Q ss_pred CCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCC
Q 007489 180 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG 259 (601)
Q Consensus 180 ~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 259 (601)
+|++++.|+.|++||+.+...
T Consensus 130 ----~l~s~~~dg~i~iwd~~~~~~------------------------------------------------------- 150 (366)
T 3k26_A 130 ----LLLSVSKDHALRLWNIQTDTL------------------------------------------------------- 150 (366)
T ss_dssp ----EEEEEETTSCEEEEETTTTEE-------------------------------------------------------
T ss_pred ----EEEEEeCCCeEEEEEeecCeE-------------------------------------------------------
Confidence 999999999999999875210
Q ss_pred CCCCcceEEEEE--ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEE----------------------
Q 007489 260 GHASTSLLVQVK--SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWI---------------------- 314 (601)
Q Consensus 260 ~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~---------------------- 314 (601)
+..+. ..+...|.+++|+|++++|++ +.|+.|++|++... .....
T Consensus 151 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 151 -------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp -------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH---HHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred -------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC---ccccccceeEEecCCCCcccccceeec
Confidence 11110 234578999999999999998 68999999999751 11100
Q ss_pred -EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce--------------eeeeccCcccccccCCCCCCC
Q 007489 315 -INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--------------LHTFTPCREEHDREIQPSEPP 379 (601)
Q Consensus 315 -~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 379 (601)
........|...|.+++|+ +++|++++.||.|++||+.+++. +..+.. |...
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 287 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-----------SQCD 287 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-----------SSCC
T ss_pred cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc-----------cCCc
Confidence 0001223478899999998 77999999999999999977643 455555 8889
Q ss_pred eeEEEEccC--CCEEEEEecCCeEEEEEcCCceE----EEEeecc-CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 380 ITKMFTSSD--GQWLAAVNCFGDVYIFNLEIQRQ----HWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 380 i~~l~~spd--~~~las~~~dg~i~iwd~~~~~~----~~~~~~~-~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
|++++|+|+ +++|++++.||.|++||+.+++. ...+..+ +...|++++|+| ++++|++++.||.|++||+.+
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence 999999999 99999999999999999998752 2234432 257899999999 999999999999999999863
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=299.86 Aligned_cols=355 Identities=12% Similarity=0.054 Sum_probs=246.5
Q ss_pred cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCccchhhhcc---------
Q 007489 7 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHS--------- 75 (601)
Q Consensus 7 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~~~~~~~~~--------- 75 (601)
.++.+++|++..++....+. +|...|.+++|+| ++ +|++|+.||.|++||+.+++....+.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 92 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVER--------IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGR 92 (408)
T ss_dssp HHHHHHHHTEEECTTEEECC--------CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECT
T ss_pred ccCcceeeccccCcceeeee--------ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccc
Confidence 45678899998888888777 8999999999999 88 99999999999999999887766654
Q ss_pred ----ccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 76 ----FHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 76 ----~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
+|...|.+++|+| ++++|++++.|+.|++||+.++.. . ....+...+.++.+.
T Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------~-~~~~~~~~~~~~~~~---- 150 (408)
T 4a11_B 93 DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------------A-DVFNFEETVYSHHMS---- 150 (408)
T ss_dssp TCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------------E-EEEECSSCEEEEEEC----
T ss_pred cccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------------c-eeccCCCceeeeEee----
Confidence 5999999999999 778999999999999999998763 2 223467788888887
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|.+. ++.++++++.|+.|++||+.+....
T Consensus 151 -----~~~~---------------------~~~~~~~~~~~~~v~~~d~~~~~~~------------------------- 179 (408)
T 4a11_B 151 -----PVST---------------------KHCLVAVGTRGPKVQLCDLKSGSCS------------------------- 179 (408)
T ss_dssp -----SSCS---------------------SCCEEEEEESSSSEEEEESSSSCCC-------------------------
T ss_pred -----cCCC---------------------CCcEEEEEcCCCeEEEEeCCCccee-------------------------
Confidence 4322 1238999999999999998752210
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~ 308 (601)
.....|...|.+++|+|++. ++++ +.++.|++|+++....
T Consensus 180 --------------------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 180 --------------------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp --------------------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred --------------------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 11123457899999999998 4666 6899999999976221
Q ss_pred CcceEEEe----------eecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCC
Q 007489 309 GQGEWIIN----------KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 378 (601)
Q Consensus 309 ~~~~~~~~----------~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (601)
.+..+. ......|...|.+++|+|++++|++++.||.|++||+.+++....+...... ....
T Consensus 222 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~ 293 (408)
T 4a11_B 222 --CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN------NSKK 293 (408)
T ss_dssp --CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC------CCSS
T ss_pred --ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc------cccc
Confidence 111110 0122567789999999999999999999999999999988766554432110 0112
Q ss_pred CeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccc
Q 007489 379 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEW 458 (601)
Q Consensus 379 ~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 458 (601)
.+........+..+++++.++.|++||+.+++....+.. |...|++++|+| ++++|++++.||.|++||+.+++....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-HYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-CSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-CCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 222233334456677778899999999999998877764 557999999999 999999999999999999998874221
Q ss_pred hhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcC
Q 007489 459 SMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 496 (601)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~ 496 (601)
.... .....-.+.....|++++.++.+.+|+.
T Consensus 372 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 372 DDET------TTKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp --------------------------------------
T ss_pred CCce------EeccccccccceeecccCccCceeecCC
Confidence 1000 0001113345556666655677777754
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=292.93 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=222.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
.+++++.||.|++||+.+++....+.. .|...|.+++|+|++ .|++|+.||.|++||+.+++.+..+.+|..
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 177 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA 177 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence 378899999999999999999988873 489999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++| ++++|++++.||.|++||+..... ....+..|...|.+++|+ |+++
T Consensus 178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~v~~~~~~---------~~~~ 230 (401)
T 4aez_A 178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH----------------QIGTLQGHSSEVCGLAWR---------SDGL 230 (401)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----------------EEEEEECCSSCEEEEEEC---------TTSS
T ss_pred ceEEEEE--CCCEEEEEcCCCCEEEEecccCcc----------------eeeEEcCCCCCeeEEEEc---------CCCC
Confidence 9999999 468999999999999999985331 145566777788888877 6665
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.|++|+.|+.|++||+.+
T Consensus 231 ------------------------~l~s~~~d~~v~iwd~~~-------------------------------------- 248 (401)
T 4aez_A 231 ------------------------QLASGGNDNVVQIWDARS-------------------------------------- 248 (401)
T ss_dssp ------------------------EEEEEETTSCEEEEETTC--------------------------------------
T ss_pred ------------------------EEEEEeCCCeEEEccCCC--------------------------------------
Confidence 777788777777777653
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
+..+ ..
T Consensus 249 ---------------------------------------------------------------------~~~~-----~~ 254 (401)
T 4aez_A 249 ---------------------------------------------------------------------SIPK-----FT 254 (401)
T ss_dssp ---------------------------------------------------------------------SSEE-----EE
T ss_pred ---------------------------------------------------------------------CCcc-----EE
Confidence 0111 11
Q ss_pred CCcCccceeEEEEccCCCe-EEEEe--cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE-
Q 007489 320 LPRKLQFAHSMIFSYDSSQ-LIIAG--HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV- 395 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~-l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~- 395 (601)
+..|...|.+++|+|++.. +++++ .|+.|++||+.+++.+..+. +...|.+++|+|++++|+++
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD------------AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEE
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe------------CCCcEEEEEECCCCCeEEEEe
Confidence 2345567889999997754 55544 69999999999999888886 56789999999999999995
Q ss_pred -ecCCeEEEEEcCCceEEEE--eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 396 -NCFGDVYIFNLEIQRQHWF--ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 396 -~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.||.|+||++.+++.... +. .|...|.+++|+| ++.+|++++.||.|++|++.+++.
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSP-DGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECT-TSSEEEEECTTSEEEEEECCC---
T ss_pred ecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcc
Confidence 4899999999998665433 33 3557899999999 999999999999999999998864
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=304.32 Aligned_cols=310 Identities=11% Similarity=0.119 Sum_probs=234.4
Q ss_pred EEECCCCceEEEEEeccCCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCc---cchhh-hcc-ccccceEEEE
Q 007489 13 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRH---GTLLQ-AHS-FHKGDVNALA 85 (601)
Q Consensus 13 iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~---~~~~~-~~~-~h~~~V~~l~ 85 (601)
.|+ .+|+.+..+.. +|.+.|++++|+| ++ +|++|+.||.|+|||+.+ +.... .+. .|.+.|.+++
T Consensus 47 ~w~-~~g~~~~~~~~-------~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~ 118 (437)
T 3gre_A 47 MGN-LRGKLIATLME-------NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQIT 118 (437)
T ss_dssp GGG-CCCCEEEEECT-------TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEE
T ss_pred ccc-ccceEEeeecc-------CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEE
Confidence 487 46888888831 8999999999999 88 999999999999999976 43221 222 5999999999
Q ss_pred EeCCCCEEEEEeeCCeEEEEEec---cCcCCCCCCCCCccccceeEEecCccc------------cccceeEEEeecccc
Q 007489 86 AAPSHNRVFSTGSDGQVILYKAS---CESIGPNDGLSSSEVIKKWIYVGSVRA------------HTHDVRALTVAVPIS 150 (601)
Q Consensus 86 ~s~~~~~l~s~~~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~ 150 (601)
|+|++++|++|+.||.|++||+. .+.. ...... +...+.++.+. .+
T Consensus 119 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~ 179 (437)
T 3gre_A 119 MIPNFDAFAVSSKDGQIIVLKVNHYQQESE-----------------VKFLNCECIRKINLKNFGKNEYAVRMRAF--VN 179 (437)
T ss_dssp ECTTSSEEEEEETTSEEEEEEEEEEEETTE-----------------EEEEEEEEEEEEEGGGGSSCCCEEEEEEE--EC
T ss_pred EeCCCCEEEEEeCCCEEEEEEeccccCCce-----------------eeccccceeEEEEccCcccccCceEEEEE--Ec
Confidence 99999999999999999999996 3331 111121 23333444321 00
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
+++ ..|++++.|+.|++||+++..
T Consensus 180 -----~~~------------------------~~l~~~~~d~~i~iwd~~~~~--------------------------- 203 (437)
T 3gre_A 180 -----EEK------------------------SLLVALTNLSRVIIFDIRTLE--------------------------- 203 (437)
T ss_dssp -----SSC------------------------EEEEEEETTSEEEEEETTTCC---------------------------
T ss_pred -----CCC------------------------CEEEEEeCCCeEEEEeCCCCe---------------------------
Confidence 334 389999999999999987521
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec-CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK-ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~ 308 (601)
.+..+... |...|.+++|+|++++|++ +.|+.|++||++.
T Consensus 204 -----------------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--- 245 (437)
T 3gre_A 204 -----------------------------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--- 245 (437)
T ss_dssp -----------------------------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT---
T ss_pred -----------------------------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC---
Confidence 12222221 4578999999999999998 6899999999985
Q ss_pred CcceEEEeeecCCcCccceeEEEEc----cCCCeEEEEecCCcEEEEEcCCCceeeeeccCccccc-------------c
Q 007489 309 GQGEWIINKRQLPRKLQFAHSMIFS----YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD-------------R 371 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~i~~s----~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------~ 371 (601)
+..+ .... ..+...|.+++|+ |++.+|++++.||.|++||+.+++.+..+..+..... .
T Consensus 246 ~~~~---~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 246 NVLI---RSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp TEEE---EEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred ccEE---EEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 3332 1111 2456689999555 5688999999999999999999998888876532110 0
Q ss_pred cCCC--CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc-------------------------------
Q 007489 372 EIQP--SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL------------------------------- 418 (601)
Q Consensus 372 ~~~~--~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~------------------------------- 418 (601)
.+.+ |...|++++|+ ++++|++|+.||.|++||+.+++....+...
T Consensus 322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
T 3gre_A 322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSV 400 (437)
T ss_dssp CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------
T ss_pred eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccccc
Confidence 1222 77889999999 8899999999999999999988766555532
Q ss_pred -----CCCceeEEEecCCC--CCEEEEEeCCCeEEEEE
Q 007489 419 -----EGASVTAAGFPPQN--NNVLIITTSSNQVYVFD 449 (601)
Q Consensus 419 -----~~~~v~~l~~~p~~--~~~l~~~~~dg~v~vwd 449 (601)
|...|++++|++ + +.+|++++.||.|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~-~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCE-VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEE-SSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeec-cCCceEEEEEcCCceEEEeC
Confidence 667899999999 6 77999999999999995
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-35 Score=292.43 Aligned_cols=282 Identities=13% Similarity=0.115 Sum_probs=232.6
Q ss_pred EEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc--ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCC
Q 007489 40 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 117 (601)
Q Consensus 40 V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 117 (601)
++.|+||+++.|++|. |++|+|||..+|+++..+. +|...|++|+|+|+|++|++|+.||.|++||+.+++.
T Consensus 108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~----- 181 (420)
T 4gga_A 108 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----- 181 (420)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred ceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----
Confidence 4568999877777664 8999999999998877654 6788899999999999999999999999999998874
Q ss_pred CCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEE
Q 007489 118 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 197 (601)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~ 197 (601)
+..+.+|...+.++++. +. .|++|+.|+.+++|
T Consensus 182 ------------~~~~~~h~~~v~~~s~~-----------~~------------------------~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 182 ------------LRNMTSHSARVGSLSWN-----------SY------------------------ILSSGSRSGHIHHH 214 (420)
T ss_dssp ------------EEEECCCSSCEEEEEEE-----------TT------------------------EEEEEETTSEEEEE
T ss_pred ------------EEEEeCCCCceEEEeeC-----------CC------------------------EEEEEeCCCceeEe
Confidence 67788999999988753 33 99999999999999
Q ss_pred eccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 198 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
|..... ........|...
T Consensus 215 d~~~~~--------------------------------------------------------------~~~~~~~~h~~~ 232 (420)
T 4gga_A 215 DVRVAE--------------------------------------------------------------HHVATLSGHSQE 232 (420)
T ss_dssp ETTSSS--------------------------------------------------------------CEEEEEECCSSC
T ss_pred eecccc--------------------------------------------------------------eeeEEecccccc
Confidence 976511 111222345678
Q ss_pred eEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCC-eEEE--EecCCcEEEEEc
Q 007489 278 IICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLII--AGHDRRIYVVDV 353 (601)
Q Consensus 278 i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~-~l~~--~~~dg~i~vwd~ 353 (601)
+..+.++|+++++++ +.|+.+++|+....+..... ......|...|.+++|+|++. .+++ |+.|++|++||+
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred eeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 999999999999999 79999999999863222111 133456778999999999765 4454 357999999999
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe--cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCC
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 431 (601)
.+++++..+.. ...+.++.|+|+++.|++++ .|+.|+|||+.+++....+.. |...|++++|+|
T Consensus 309 ~t~~~~~~~~~------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~sp- 374 (420)
T 4gga_A 309 CSGACLSAVDA------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSP- 374 (420)
T ss_dssp TTTEEEEEEEC------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECT-
T ss_pred Cccccceeecc------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcC-
Confidence 99999888874 56799999999999998765 789999999999999888875 667999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC
Q 007489 432 NNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 432 ~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
++++|++|+.|++|+|||+....
T Consensus 375 dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSCSS
T ss_pred CCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999999999997654
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-35 Score=313.89 Aligned_cols=281 Identities=19% Similarity=0.215 Sum_probs=223.3
Q ss_pred CEEeeecCCcEEEEECCCC-----ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhc
Q 007489 1 MLYSGSSDGYIRSWDAKLG-----YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~ 74 (601)
+|+|||.||+|+|||+.+. ....++. +|...|.+++|+|+| +|++|+.||.|+|||+.+++.+..+
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~ 468 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLT--------GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF 468 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceec--------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE
Confidence 4899999999999998753 4456676 899999999999999 9999999999999999999999999
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
.+|...|.+++|+|++++|++|+.|++|++||...... +.......+|...|.+++|+
T Consensus 469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~--------------~~~~~~~~~h~~~v~~~~~~-------- 526 (694)
T 3dm0_A 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK--------------YTISEGGEGHRDWVSCVRFS-------- 526 (694)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--------------EEECSSTTSCSSCEEEEEEC--------
T ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc--------------eeeccCCCCCCCcEEEEEEe--------
Confidence 99999999999999999999999999999999765431 12223346789999999998
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|++. ...|++++.|+.|++||+....
T Consensus 527 -~~~~----------------------~~~l~s~s~d~~v~vwd~~~~~------------------------------- 552 (694)
T 3dm0_A 527 -PNTL----------------------QPTIVSASWDKTVKVWNLSNCK------------------------------- 552 (694)
T ss_dssp -SCSS----------------------SCEEEEEETTSCEEEEETTTCC-------------------------------
T ss_pred -CCCC----------------------cceEEEEeCCCeEEEEECCCCc-------------------------------
Confidence 7652 1389999999999999987521
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~ 313 (601)
+......|...|.+++|+|++++|++ +.|+.|++||+.. +..+
T Consensus 553 --------------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~---~~~~- 596 (694)
T 3dm0_A 553 --------------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE---GKKL- 596 (694)
T ss_dssp --------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT---TEEE-
T ss_pred --------------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CceE-
Confidence 11222345688999999999999999 6899999999986 4443
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCccccc--------ccCCCCCCCeeEEEE
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD--------REIQPSEPPITKMFT 385 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~ 385 (601)
..+ .+...+.+++|+|++.+|++++ ++.|++||+.+++.+..+..+..... .....+...+++++|
T Consensus 597 ----~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 597 ----YSL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp ----ECC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred ----EEe-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 222 2345799999999998887765 56699999999988877764321100 000112334789999
Q ss_pred ccCCCEEEEEecCCeEEEEEcC
Q 007489 386 SSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 386 spd~~~las~~~dg~i~iwd~~ 407 (601)
||||++|++|+.||.|+||++.
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999985
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=289.29 Aligned_cols=279 Identities=13% Similarity=0.111 Sum_probs=221.2
Q ss_pred EEeeec---CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC---C-eEEEEcCCCcEEEeeCCccc-hhhh
Q 007489 2 LYSGSS---DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G-TLVSADSTGSVQFWDSRHGT-LLQA 73 (601)
Q Consensus 2 l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~---g-~l~s~~~dg~i~vwd~~~~~-~~~~ 73 (601)
+++|+. ||.|+|||+.+++....... +|...|.+++|+|+ + .|++|+.||.|++||+.+++ .+..
T Consensus 34 ~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 106 (357)
T 3i2n_A 34 VTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS 106 (357)
T ss_dssp EEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE
T ss_pred EEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE
Confidence 567776 99999999999987766553 68999999999998 6 89999999999999999988 8888
Q ss_pred ccccccceEEEE------EeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc----ccceeEE
Q 007489 74 HSFHKGDVNALA------AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH----THDVRAL 143 (601)
Q Consensus 74 ~~~h~~~V~~l~------~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l 143 (601)
+.+|...|.+++ |+|++++|++++.|+.|++||+.++... ...+..| ...+.++
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~----------------~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP----------------VANMEPVQGENKRDCWTV 170 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC----------------SEEECCCTTSCCCCEEEE
T ss_pred EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc----------------ceeccccCCCCCCceEEE
Confidence 999999999995 5789999999999999999999886520 2233333 3478888
Q ss_pred EeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeee
Q 007489 144 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH 223 (601)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (601)
++.+.++ |+++ .|++++.|+.|++||+++..
T Consensus 171 ~~~~~~~-----~~~~------------------------~l~~~~~d~~i~i~d~~~~~-------------------- 201 (357)
T 3i2n_A 171 AFGNAYN-----QEER------------------------VVCAGYDNGDIKLFDLRNMA-------------------- 201 (357)
T ss_dssp EEECCCC------CCC------------------------EEEEEETTSEEEEEETTTTE--------------------
T ss_pred EEEeccC-----CCCC------------------------EEEEEccCCeEEEEECccCc--------------------
Confidence 8654444 7776 99999999999999987521
Q ss_pred ccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC---CCCEEEE-EcCCccE
Q 007489 224 NTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN---SGMLFAY-SDHVKPS 299 (601)
Q Consensus 224 ~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~-~~~~~v~ 299 (601)
. .....+...+.+++|+| ++.++++ +.++.|+
T Consensus 202 ------------------------------------------~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 202 ------------------------------------------L--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp ------------------------------------------E--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ------------------------------------------e--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 0 11123457899999999 8999888 6899999
Q ss_pred EEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCC-eEEEEecCCcEEEEEcCCCc-------------------ee
Q 007489 300 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSE-------------------LL 359 (601)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~-~l~~~~~dg~i~vwd~~~~~-------------------~~ 359 (601)
+|++... ..+..+....+..|...|.+++|+|+++ +|++++.||.|++||+..+. .+
T Consensus 238 i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (357)
T 3i2n_A 238 VFDMRTQ---HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL 314 (357)
T ss_dssp EEEEEEE---ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred EEeCcCC---CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence 9999872 2221122123347788999999999998 89999999999999997543 34
Q ss_pred eeeccCcccccccCCCCCCCeeEEEEccCCCEEE-EEecCCeEEEEEcCCce
Q 007489 360 HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la-s~~~dg~i~iwd~~~~~ 410 (601)
..+.. |...|++++|+|++++|+ +++.||.|+|||+.+.+
T Consensus 315 ~~~~~-----------~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 315 QNVTL-----------STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEC-----------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ecccc-----------CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 45555 889999999999999998 89999999999998765
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.8e-35 Score=274.69 Aligned_cols=252 Identities=14% Similarity=0.141 Sum_probs=201.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc--cchhhhccccccceEEEEEeC--CCCEEEEEeeCCeEEEEEecc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~~ 109 (601)
+|...|++++|+|+| +|++|+.|++|+|||+.. ++++.++.+|.+.|.+++|++ ++++|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 899999999999999 999999999999999974 467788999999999999986 489999999999999999987
Q ss_pred CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc--ccccccCCCCccccccccccccCCCCEEEE
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
+.. .....+..|...|.+++|+ |+ +. +|++
T Consensus 87 ~~~---------------~~~~~~~~h~~~v~~v~~~---------p~~~g~------------------------~l~s 118 (297)
T 2pm7_B 87 GRW---------------SQIAVHAVHSASVNSVQWA---------PHEYGP------------------------MLLV 118 (297)
T ss_dssp SCB---------------CCCEEECCCSSCEEEEEEC---------CGGGCS------------------------EEEE
T ss_pred Cce---------------EEEEEeecCCCceeEEEeC---------cCCCCc------------------------EEEE
Confidence 642 1134566799999999998 76 44 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
++.|+.|++||++......
T Consensus 119 ~s~d~~v~~wd~~~~~~~~------------------------------------------------------------- 137 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTS------------------------------------------------------------- 137 (297)
T ss_dssp EETTSEEEEEEBCSSSCBC-------------------------------------------------------------
T ss_pred EECCCcEEEEEecCCCcee-------------------------------------------------------------
Confidence 9999999999987521100
Q ss_pred EEEEecCCCCeEEEEEcCC-------------CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc
Q 007489 268 VQVKSKASRKIICSTISNS-------------GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 333 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~-------------g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 333 (601)
......|...|.+++|+|+ +++|++ +.|+.|++|+++. +...+.. ...+.+|...|.+++|+
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~---~~~~~~~-~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTYVL-ESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET---TTTEEEE-EEEECCCSSCEEEEEEC
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC---CCceEEE-EEEecCCCCceEEEEEC
Confidence 0111234566778888776 568888 7899999999986 3322222 24567899999999999
Q ss_pred cCC---CeEEEEecCCcEEEEEcCCCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 334 YDS---SQLIIAGHDRRIYVVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 334 ~d~---~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
|++ ++|++++.|++|++||+.+... ...+... .|...|.+++|+|++++||+++.||.|+||+..
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE---------KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS---------CCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc---------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 985 8999999999999999876431 1222111 178899999999999999999999999999976
Q ss_pred C
Q 007489 408 I 408 (601)
Q Consensus 408 ~ 408 (601)
.
T Consensus 285 ~ 285 (297)
T 2pm7_B 285 L 285 (297)
T ss_dssp T
T ss_pred C
Confidence 3
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.5e-34 Score=275.74 Aligned_cols=306 Identities=16% Similarity=0.210 Sum_probs=238.2
Q ss_pred CccchhhhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEE
Q 007489 66 RHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 144 (601)
Q Consensus 66 ~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 144 (601)
++.++..+|++|.+.|++|+|+|+ +++|+|||.|++|++||+...+. ....+...+.+|...|.+++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------------~~~~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------------NYGIPQRALRGHSHFVSDVV 93 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------------CSEEEEEEECCCSSCEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------------ccceeeEEEeCCCCCEEEEE
Confidence 445566789999999999999997 68999999999999999987653 11223566789999999999
Q ss_pred eeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeec
Q 007489 145 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN 224 (601)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (601)
|+ |+++ +|++++.|+.|++|+.....
T Consensus 94 ~s---------~dg~------------------------~l~s~~~d~~i~~~~~~~~~--------------------- 119 (340)
T 4aow_A 94 IS---------SDGQ------------------------FALSGSWDGTLRLWDLTTGT--------------------- 119 (340)
T ss_dssp EC---------TTSS------------------------EEEEEETTSEEEEEETTTTE---------------------
T ss_pred EC---------CCCC------------------------EEEEEcccccceEEeecccc---------------------
Confidence 98 8887 99999999999999987521
Q ss_pred cccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEe
Q 007489 225 TIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFEL 303 (601)
Q Consensus 225 ~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~ 303 (601)
.......+...+....+++++.+|++ +.|+.+++|++
T Consensus 120 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 120 ------------------------------------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp ------------------------------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred ------------------------------------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 11112233466778889999998888 68999999998
Q ss_pred ecCCCCcceEEEeeecCCcCccceeEEEEccCC--CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCee
Q 007489 304 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 381 (601)
.. ... .......|...+..++|++++ .++++++.|+.|++||+.+++.+..+.+ |...|+
T Consensus 158 ~~---~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----------h~~~v~ 219 (340)
T 4aow_A 158 LG---VCK----YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-----------HTGYLN 219 (340)
T ss_dssp TS---CEE----EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC-----------CSSCEE
T ss_pred CC---Cce----EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC-----------CCCcEE
Confidence 64 221 124566788899999999865 5688999999999999999999999988 899999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhc
Q 007489 382 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQ 461 (601)
Q Consensus 382 ~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 461 (601)
+++|+|++++|++|+.||.|++||+.+.+....+.. ...|.++.|+| ++. +++++.|+.|++||++++....-.
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~~~~~~~-- 293 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSP-NRY-WLCAATGPSIKIWDLEGKIIVDEL-- 293 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--SSCEEEEEECS-SSS-EEEEEETTEEEEEETTTTEEEEEE--
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC--CceEEeeecCC-CCc-eeeccCCCEEEEEECCCCeEEEec--
Confidence 999999999999999999999999999998777664 35899999999 764 667778999999999887542211
Q ss_pred ccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc-CceEEEEeCC
Q 007489 462 HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS-ARAMCVIDFG 505 (601)
Q Consensus 462 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~-~~~~~~~~~~ 505 (601)
..........+|...|.+++|+|+ +..++..+ +..+.++|+.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSAD--GQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CCC-------CCCCCEEEEEECTT--SSEEEEEETTSCEEEEEEE
T ss_pred cccceeeeccCCCCCEEEEEECCC--CCEEEEEeCCCEEEEEeCC
Confidence 111123345678899999999998 44555443 4456666654
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.8e-35 Score=289.68 Aligned_cols=286 Identities=17% Similarity=0.201 Sum_probs=226.1
Q ss_pred CEEeeecCCcEEEEECCCCc------eEEEEEeccCCCCCCCceEEEEEEEeeC----C----eEEEEcCCCcEEEeeCC
Q 007489 1 MLYSGSSDGYIRSWDAKLGY------EIYRITVGLGGLGSGPELCIWSLLSLRC----G----TLVSADSTGSVQFWDSR 66 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~h~~~V~~v~~s~~----g----~l~s~~~dg~i~vwd~~ 66 (601)
+|++|+.||+|+|||+.+++ .+..+. +|...|.+++|+|+ + .|++++.||.|++||+.
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~ 99 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 99 (397)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--------CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEE
T ss_pred eEEEEcCCCEEEEEECCCcccccCCCcceEEe--------cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEcc
Confidence 48999999999999999988 788888 89999999999999 6 78899999999999999
Q ss_pred ccch-----hhhcccc-----ccceEEEEEe----CCCCE-EEEEeeCCeEEEEEecc------CcCCCCCCCCCccccc
Q 007489 67 HGTL-----LQAHSFH-----KGDVNALAAA----PSHNR-VFSTGSDGQVILYKASC------ESIGPNDGLSSSEVIK 125 (601)
Q Consensus 67 ~~~~-----~~~~~~h-----~~~V~~l~~s----~~~~~-l~s~~~dg~i~vw~~~~------~~~~~~~~~~~~~~~~ 125 (601)
+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.. +...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------ 167 (397)
T 1sq9_A 100 REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL------------ 167 (397)
T ss_dssp ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT------------
T ss_pred CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee------------
Confidence 8887 7888888 5999999999 99999 99999999999999998 4431
Q ss_pred eeEEecCc-------cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEe
Q 007489 126 KWIYVGSV-------RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 198 (601)
Q Consensus 126 ~~~~~~~~-------~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~ 198 (601)
.|.....+ ..|...|.+++|+ |++ .|++++.|+.|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~-------------------------~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDIS---------ERG-------------------------LIATGFNNGTVQISE 213 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEEC---------TTS-------------------------EEEEECTTSEEEEEE
T ss_pred eccCcceeeeeeccccCCCCCceEEEEC---------CCc-------------------------eEEEEeCCCcEEEEE
Confidence 11111133 4478889999987 543 799999999999999
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe--cC--
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS--KA-- 274 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 274 (601)
+++.. .+..+.. .|
T Consensus 214 ~~~~~--------------------------------------------------------------~~~~~~~~~~h~~ 231 (397)
T 1sq9_A 214 LSTLR--------------------------------------------------------------PLYNFESQHSMIN 231 (397)
T ss_dssp TTTTE--------------------------------------------------------------EEEEEECCC---C
T ss_pred CCCCc--------------------------------------------------------------eeEEEeccccccc
Confidence 87521 1111111 13
Q ss_pred -CCCeEEEEEcCCCCEEEE-EcC---CccEEEEeecCCCCcceEEEeeecCCc-------------CccceeEEEEccCC
Q 007489 275 -SRKIICSTISNSGMLFAY-SDH---VKPSLFELKKGKVGQGEWIINKRQLPR-------------KLQFAHSMIFSYDS 336 (601)
Q Consensus 275 -~~~i~~~~~s~~g~~l~~-~~~---~~v~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~i~~s~d~ 336 (601)
...|.+++|+|++++|++ +.+ +.|++|++.. +..+ ..+.. |...|.+++|+|++
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEE-----EEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCC---Cccc-----ceeccCcccccccccccccCCcEEEEEECCCC
Confidence 578999999999999999 577 8999999985 4443 22333 78899999999999
Q ss_pred CeEEEEecCCcEEEEEcCCCceeeeec------cCcccc----cccCCCCCCCeeEEEEccCC----------CEEEEEe
Q 007489 337 SQLIIAGHDRRIYVVDVSSSELLHTFT------PCREEH----DREIQPSEPPITKMFTSSDG----------QWLAAVN 396 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~~----~~~~~~~~~~i~~l~~spd~----------~~las~~ 396 (601)
++|++++.||.|++||+.+++.+..+. .+.+.. ......|...|++++|+|++ ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999998888 410000 00001128999999999998 7999999
Q ss_pred cCCeEEEEEcCCce
Q 007489 397 CFGDVYIFNLEIQR 410 (601)
Q Consensus 397 ~dg~i~iwd~~~~~ 410 (601)
.||.|++|++.+++
T Consensus 384 ~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 384 LDRSIRWFREAGGK 397 (397)
T ss_dssp TTTEEEEEEEEC--
T ss_pred CCCcEEEEEcCCCC
Confidence 99999999998763
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-36 Score=295.01 Aligned_cols=306 Identities=14% Similarity=0.114 Sum_probs=233.0
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC----C-eEEEEcCCCcEEEeeCCccchhhhccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC----G-TLVSADSTGSVQFWDSRHGTLLQAHSF 76 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~----g-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 76 (601)
+++++.++.|++||+.+++.+..+..... ..|...|++++|+|+ | +|++|+.||.|++||+.+++.+..+.+
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 113 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEIRLLQSYVD---ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG 113 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCEEEEEEEEC---SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred EEEECCCCEEEEEEcCCCcEEEeeeeccc---cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence 66777788999999999988877763211 137788999999999 6 799999999999999999999999999
Q ss_pred cccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc---cccccceeEEEeeccccCC
Q 007489 77 HKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV---RAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 77 h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~ 152 (601)
|...|.+++|+| ++++|++++.||.|++||+.+++. ...+ ..|...|.+++|+
T Consensus 114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~------ 170 (366)
T 3k26_A 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-----------------VAIFGGVEGHRDEVLSADYD------ 170 (366)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----------------EEEECSTTSCSSCEEEEEEC------
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----------------EEEecccccccCceeEEEEC------
Confidence 999999999999 999999999999999999988763 3333 6899999999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+++ .|++++.|+.|++||+.+........ ..+.++|++.
T Consensus 171 ---~~~~------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~~~~~~ 210 (366)
T 3k26_A 171 ---LLGE------------------------KIMSCGMDHSLKLWRINSKRMMNAIK-------------ESYDYNPNKT 210 (366)
T ss_dssp ---TTSS------------------------EEEEEETTSCEEEEESCSHHHHHHHH-------------HHHTCCGGGC
T ss_pred ---CCCC------------------------EEEEecCCCCEEEEECCCCccccccc-------------eeEEecCCCC
Confidence 8876 99999999999999998643221111 0222333332
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
.+.......... .......+...|.+++|+ ++++++ +.++.|++|++........
T Consensus 211 ~~~~~~~~~~~~----------------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~ 266 (366)
T 3k26_A 211 NRPFISQKIHFP----------------------DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDID 266 (366)
T ss_dssp SSCCCCEEECCC----------------------SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGG
T ss_pred cccccceeeccC----------------------ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccc
Confidence 211111111100 112222356889999998 667777 6899999999986321000
Q ss_pred -------eEEEeeecCCcCccceeEEEEccC--CCeEEEEecCCcEEEEEcCCCcee----eeeccCcccccccCCCCCC
Q 007489 312 -------EWIINKRQLPRKLQFAHSMIFSYD--SSQLIIAGHDRRIYVVDVSSSELL----HTFTPCREEHDREIQPSEP 378 (601)
Q Consensus 312 -------~~~~~~~~~~~~~~~v~~i~~s~d--~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~ 378 (601)
.. .....+..|...|.+++|+|+ +++|++++.||.|++||+.+++.. ..+..+. |..
T Consensus 267 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~~ 336 (366)
T 3k26_A 267 KIKPSESNV-TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK---------CGA 336 (366)
T ss_dssp GCCTTCCCE-EEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT---------CCS
T ss_pred ccccCCcch-heeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc---------cCC
Confidence 00 011344567778999999999 999999999999999999887643 3566522 378
Q ss_pred CeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 379 PITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 379 ~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
.|++++|+|++++|++++.||.|+|||+.
T Consensus 337 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 337 AIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999999999999985
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-34 Score=288.88 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=227.3
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
||+| .|++|+|||+.+|++++.+... +|...|++|+|+|+| +|++|+.||.|+|||+.+++++..+.+|...
T Consensus 119 lAvg-ld~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~ 191 (420)
T 4gga_A 119 LAVA-LDNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 191 (420)
T ss_dssp EEEE-ETTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEE-eCCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc
Confidence 5555 5999999999999999888742 688899999999999 9999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
|.+++++ +..|++|+.|+.+++|+...... ....+.+|...+..+.+. |+++
T Consensus 192 v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~----------------~~~~~~~h~~~~~~~~~~---------~~g~- 243 (420)
T 4gga_A 192 VGSLSWN--SYILSSGSRSGHIHHHDVRVAEH----------------HVATLSGHSQEVCGLRWA---------PDGR- 243 (420)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEETTSSSC----------------EEEEEECCSSCEEEEEEC---------TTSS-
T ss_pred eEEEeeC--CCEEEEEeCCCceeEeeecccce----------------eeEEecccccceeeeeec---------CCCC-
Confidence 9998875 78999999999999999887543 245678899999999998 8886
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
.+++++.|+.+++|+.........
T Consensus 244 -----------------------~l~s~~~D~~v~i~~~~~~~~~~~--------------------------------- 267 (420)
T 4gga_A 244 -----------------------HLASGGNDNLVNVWPSAPGEGGWV--------------------------------- 267 (420)
T ss_dssp -----------------------EEEEEETTSCEEEEESSCCSSCSC---------------------------------
T ss_pred -----------------------eeeeeeccccceEEeeccccccce---------------------------------
Confidence 999999999999999876321110
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEE---cCCccEEEEeecCCCCcceEEEe
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYS---DHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~---~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
.......+...|.+++|+|++ .+++++ .|+.|++||+.. +..+..+
T Consensus 268 --------------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~- 317 (420)
T 4gga_A 268 --------------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAV- 317 (420)
T ss_dssp --------------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEE-
T ss_pred --------------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceee-
Confidence 011222345789999999976 455542 689999999986 4443211
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEe--cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAG--HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
.+...+.++.|+|+++.+++++ .|+.|+|||+.+++++.++.+ |...|++++|||||++||+
T Consensus 318 -----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-----------H~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 318 -----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp -----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSCEEE
T ss_pred -----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCCCEEEE
Confidence 1235789999999999998876 689999999999999999998 9999999999999999999
Q ss_pred EecCCeEEEEEcCCceE
Q 007489 395 VNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~~~ 411 (601)
|+.|++|+|||+.....
T Consensus 382 ~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 382 AAADETLRLWRCFELDP 398 (420)
T ss_dssp EETTTEEEEECCSCSSC
T ss_pred EecCCeEEEEECCCCCc
Confidence 99999999999976544
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=281.68 Aligned_cols=281 Identities=15% Similarity=0.129 Sum_probs=233.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||.|++||+.+++.+..+. +|...|++++|+|++ .|++++.||.|++||+.+++.+..+. |..
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~ 116 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV 116 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS
T ss_pred EEEEEeCCCEEEEEeCCCchhhhhhh--------hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC
Confidence 48999999999999999999999998 899999999999999 99999999999999999999988888 889
Q ss_pred ceEEEEEeCCCCEEEEEeeC-----CeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc--ceeEEEeeccccCC
Q 007489 80 DVNALAAAPSHNRVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH--DVRALTVAVPISRE 152 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~ 152 (601)
.|.+++|+|++++|++++.+ +.|.+|++......... ..........+..|.. .+.+++|+
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~------ 184 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL------TKVSEEPIHKIITHEGLDAATVAGWS------ 184 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE------EEECSSCSEEEECCTTCCCEEEEEEC------
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee------cccccceeeeccCCcCccceeEEEEc------
Confidence 99999999999999999998 99999999886531110 0000001223344555 89999998
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+++ .|++++.|+.|++||+.+..
T Consensus 185 ---~~~~------------------------~l~~~~~dg~i~i~d~~~~~----------------------------- 208 (369)
T 3zwl_B 185 ---TKGK------------------------YIIAGHKDGKISKYDVSNNY----------------------------- 208 (369)
T ss_dssp ---GGGC------------------------EEEEEETTSEEEEEETTTTT-----------------------------
T ss_pred ---CCCC------------------------EEEEEcCCCEEEEEECCCCc-----------------------------
Confidence 8886 99999999999999987511
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG 311 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~ 311 (601)
........+...|.+++|+|++++|++ +.++.|++|++.. +..
T Consensus 209 ---------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~ 252 (369)
T 3zwl_B 209 ---------------------------------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST---LQV 252 (369)
T ss_dssp ---------------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---CCE
T ss_pred ---------------------------------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC---Cce
Confidence 111222234678999999999999998 6899999999975 333
Q ss_pred eEEEeeecCCcCccceeEEEEccCCCeEEEEecCC--------------cEEEEEcCCCceeeeeccCcccccccCCCCC
Q 007489 312 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR--------------RIYVVDVSSSELLHTFTPCREEHDREIQPSE 377 (601)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (601)
+..+. +...+..++|+|+++++++++.++ .+++||+.+++.+..+.+ |.
T Consensus 253 ~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~ 315 (369)
T 3zwl_B 253 LKKYE------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-----------HF 315 (369)
T ss_dssp EEEEE------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC-----------CS
T ss_pred eeeec------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec-----------cc
Confidence 32111 456889999999999999999988 899999999999999988 89
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~ 411 (601)
..|++++|+|++++|++++.||.|+||+++.+..
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 9999999999999999999999999999987643
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=275.58 Aligned_cols=281 Identities=13% Similarity=0.110 Sum_probs=228.7
Q ss_pred EEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc--ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCC
Q 007489 40 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 117 (601)
Q Consensus 40 V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 117 (601)
.++|+||+++.|++| .|++|+|||+.+|+++..+. +|...|++++|+|++++|++|+.||+|++|++.+++.
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~----- 101 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----- 101 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-----
Confidence 467999999876665 58999999999999887665 6788899999999999999999999999999998875
Q ss_pred CCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEE
Q 007489 118 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 197 (601)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~ 197 (601)
...+.+|...+.++.+ ++. .+++++.++.+++|
T Consensus 102 ------------~~~~~~h~~~~~~~~~-----------~~~------------------------~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 102 ------------LRNMTSHSARVGSLSW-----------NSY------------------------ILSSGSRSGHIHHH 134 (318)
T ss_dssp ------------EEEEECCSSCEEEEEE-----------ETT------------------------EEEEEETTSEEEEE
T ss_pred ------------EEEecCccceEEEeec-----------CCC------------------------EEEEEecCCceEee
Confidence 6677888888877664 333 89999999999999
Q ss_pred eccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 198 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
+..... ........|...
T Consensus 135 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~ 152 (318)
T 4ggc_A 135 DVRVAE--------------------------------------------------------------HHVATLSGHSQE 152 (318)
T ss_dssp ETTSSS--------------------------------------------------------------CEEEEEECCSSC
T ss_pred ecCCCc--------------------------------------------------------------eeEEEEcCccCc
Confidence 876411 111223345678
Q ss_pred eEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeE---EEEecCCcEEEEEc
Q 007489 278 IICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL---IIAGHDRRIYVVDV 353 (601)
Q Consensus 278 i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l---~~~~~dg~i~vwd~ 353 (601)
+.+++++++++++++ +.|+.|++|++...+..... ......+...|.+++++|++..+ ++++.++.|++||.
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 999999999999998 68999999999863221111 12334566789999999977644 35667899999999
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe--cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCC
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 431 (601)
.......... +...+..+.|+|+++.+++++ .|+.|+|||+.+++....+.. |...|++++|+|
T Consensus 229 ~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~sp- 294 (318)
T 4ggc_A 229 CSGACLSAVD------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSP- 294 (318)
T ss_dssp TTCCEEEEEE------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECT-
T ss_pred cccccccccc------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcC-
Confidence 8877766555 677899999999999887765 799999999999999888875 667999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 007489 432 NNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 432 ~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
++++|++++.||+|+|||+...
T Consensus 295 dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 295 DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TSSCEEEEETTTEEEEECCSCC
T ss_pred CCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999764
No 78
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-35 Score=296.12 Aligned_cols=290 Identities=11% Similarity=0.138 Sum_probs=233.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+||+|+.||.|++||+.+++.+..+. +|...|++++|+|++ .|++|+.|+.|++||+.+++.+..+.+|..
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 182 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREIDQ--------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 182 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEETT--------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred EEEEEECCCCEEEEeCCCcceeeecc--------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence 48999999999999999988877765 899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc---ccccceeEEEeeccccCCCCCC
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR---AHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
.|.+++|+|++++|++++.|+.|++||+.+++. ...+. .|...+.++++. +
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~---------~ 236 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT-----------------IHTFNRKENPHDGVNSIALF---------V 236 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-----------------EEEECBTTBTTCCEEEEEEE---------E
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce-----------------eEEeecCCCCCCCccEEEEe---------c
Confidence 999999999999999999999999999988763 33333 456667777765 3
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++. .. ..
T Consensus 237 ~~~------------------------~~-------------~~------------------------------------ 243 (420)
T 3vl1_A 237 GTD------------------------RQ-------------LH------------------------------------ 243 (420)
T ss_dssp CCC------------------------SS-------------CG------------------------------------
T ss_pred CCc------------------------ce-------------ee------------------------------------
Confidence 322 00 00
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
..+...+.+++|+|++++|++ +.++.|++||+.. +..+.
T Consensus 244 -----------------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~-- 283 (420)
T 3vl1_A 244 -----------------------------------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS---KEQTI-- 283 (420)
T ss_dssp -----------------------------------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT---CCEEE--
T ss_pred -----------------------------------ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC---CceeE--
Confidence 001244667778999998888 6899999999975 33331
Q ss_pred eeecCCcCccceeEEEEccCCC-eEEEEecCCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
.....|...|.+++|+|+++ +|++++.||.|++||+.+++ ++..+..+ |...|.++. ++++++|+
T Consensus 284 --~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~v~~~~-~~~~~~l~ 350 (420)
T 3vl1_A 284 --QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN----------EGTPINNVY-FAAGALFV 350 (420)
T ss_dssp --EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES----------TTSCEEEEE-EETTEEEE
T ss_pred --EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc----------CCCCceEEE-eCCCCEEE
Confidence 22345778999999999999 99999999999999998875 46677663 567788885 46888999
Q ss_pred EEecCCeEEEEEcCCceE---------EEEeeccCCCceeEEEecCCCCC---EEEEEeCCCeEEEEEcCC
Q 007489 394 AVNCFGDVYIFNLEIQRQ---------HWFISRLEGASVTAAGFPPQNNN---VLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 394 s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~v~~l~~~p~~~~---~l~~~~~dg~v~vwd~~~ 452 (601)
+++.||.|++|++..... ...+. .+...|.+++|+| ++. .|++++.+|.+.+|+++.
T Consensus 351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPESERPAIEFETPTFLV-SNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EETTTEEEEEEEECCTTCCSCEECTTSCEEEC-CSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred EecCCccEEEEeccCCCCCccceeccCccEEc-cCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence 999999999999876311 11222 2446899999999 888 788888999999999875
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-34 Score=280.75 Aligned_cols=296 Identities=13% Similarity=0.072 Sum_probs=232.9
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc---hhhhccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEe-c
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT---LLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKA-S 108 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~-~ 108 (601)
+|...|++++|+|++ .|++++.||.|++||+.+++ ....+.+|...|.+++|+|+++ +|++|+.||.|++|++ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 799999999999999 89999999999999998776 2445568999999999999999 9999999999999999 7
Q ss_pred cCcCCCCCCCCCccccceeEEecCccc--cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 109 CESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
++. ...+.. |...|.+++|+ | +. .|+
T Consensus 89 ~~~------------------~~~~~~~~~~~~v~~l~~~---------~-~~------------------------~l~ 116 (342)
T 1yfq_A 89 SPS------------------FQALTNNEANLGICRICKY---------G-DD------------------------KLI 116 (342)
T ss_dssp SSS------------------EEECBSCCCCSCEEEEEEE---------T-TT------------------------EEE
T ss_pred CCc------------------eEeccccCCCCceEEEEeC---------C-CC------------------------EEE
Confidence 765 456677 99999999998 6 54 999
Q ss_pred EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 187 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 187 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
+++.|+.|++||+.+...-.... . + . .
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~------------~--------~-------~--------------------------~ 143 (342)
T 1yfq_A 117 AASWDGLIEVIDPRNYGDGVIAV------------K--------N-------L--------------------------N 143 (342)
T ss_dssp EEETTSEEEEECHHHHTTBCEEE------------E--------E-------S--------------------------C
T ss_pred EEcCCCeEEEEcccccccccccc------------c--------C-------C--------------------------e
Confidence 99999999999987521100000 0 0 0 0
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeec-CCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEec
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK-GKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGH 344 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~ 344 (601)
+.. ..+...+.+++|+|++ +++.+.++.|++|++.. ...... .....+...+.+++|+| +++++++++.
T Consensus 144 ~~~--~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 144 SNN--TKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGT------IEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp SSS--SSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCE------EEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred eeE--EeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccce------eeecCCCCceeEEEECCCCCCEEEEEec
Confidence 000 0134678999999988 44447999999999975 211111 22335567899999999 9999999999
Q ss_pred CCcEEEEEcCCC------ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 345 DRRIYVVDVSSS------ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 345 dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
||.|++|++... +....+..+..... ...|...|.+++|+|++++|++++.||.|++||+.+++....+..+
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK--DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTT--CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred CCcEEEEEEcCCCcccccccceeeeccccccc--ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 999999999876 67777776321000 0123559999999999999999999999999999999988887765
Q ss_pred CCCceeEEEecCCCCCEEEEEeCCCe-EEEEE
Q 007489 419 EGASVTAAGFPPQNNNVLIITTSSNQ-VYVFD 449 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~~l~~~~~dg~-v~vwd 449 (601)
|...|++++ | ++++|++++.||. .+.|.
T Consensus 293 h~~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 293 NEDSVVKIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSSEEEEEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred cCCCceEec--C-CCCeEEEEecCCccccccc
Confidence 477999999 8 9999999999998 44443
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-36 Score=304.13 Aligned_cols=319 Identities=9% Similarity=0.010 Sum_probs=217.2
Q ss_pred EEEEcCCCcEEEeeCCccchh----hhccccccceEEEEEeCC------CCEEEEEeeCCeEEEEEeccCcCCCCCCCCC
Q 007489 51 LVSADSTGSVQFWDSRHGTLL----QAHSFHKGDVNALAAAPS------HNRVFSTGSDGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 51 l~s~~~dg~i~vwd~~~~~~~----~~~~~h~~~V~~l~~s~~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
|++++.|++|+|||+.++++. ..+.+|.+.|.+++|+|+ +.+|++++.||+|++||+..+......
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~---- 251 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV---- 251 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE----
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc----
Confidence 445668899999999877643 346678899999999996 579999999999999999876421000
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
....-.....+.+|...|.+++|+ +++ .|++|+.||+|++||++
T Consensus 252 --~~~~~~p~~~l~~h~~~v~sv~~s---------~~~-------------------------~lasgs~DgtV~lWD~~ 295 (524)
T 2j04_B 252 --FKMCEKPSLTLSLADSLITTFDFL---------SPT-------------------------TVVCGFKNGFVAEFDLT 295 (524)
T ss_dssp --EECCCSCSEEECCTTTCEEEEEES---------SSS-------------------------EEEEEETTSEEEEEETT
T ss_pred --ceeecCceEEEEcCCCCEEEEEec---------CCC-------------------------eEEEEeCCCEEEEEECC
Confidence 000000122467789999999997 432 89999999999999987
Q ss_pred ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 007489 201 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 280 (601)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 280 (601)
+... .......|...|.+
T Consensus 296 ~~~~--------------------------------------------------------------~~~~~~~H~~~V~s 313 (524)
T 2j04_B 296 DPEV--------------------------------------------------------------PSFYDQVHDSYILS 313 (524)
T ss_dssp BCSS--------------------------------------------------------------CSEEEECSSSCEEE
T ss_pred CCCC--------------------------------------------------------------ceEEeecccccEEE
Confidence 5210 00112245678999
Q ss_pred E--EEcCCC-CEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCc--cceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 281 S--TISNSG-MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 281 ~--~~s~~g-~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
+ +++|++ ++|++ +.|++|+|||++. +..+. .+.+|. ..|.+++|+|+++.+++++.|++|++||+.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~---~~~~~-----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKD---IATTK-----TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGG---HHHHC-----EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCC---CCccc-----ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence 8 578888 88888 7999999999975 22221 111222 247899999999999999999999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec----cCCCceeEEEecC
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR----LEGASVTAAGFPP 430 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~l~~~p 430 (601)
++.++.++.+ |...|++++|||++++|++|+.||+|+|||+...... .... .+...+.+++|+|
T Consensus 386 ~~~~~~~l~g-----------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~-~~~~~~~~~~~~~v~~v~~sp 453 (524)
T 2j04_B 386 AAFAVHPLVS-----------RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH-GIKNSSATQKSLRLWKWDYSI 453 (524)
T ss_dssp CTTCCEEEEE-----------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT-CC------CCCCEEEECBCCS
T ss_pred ccccceeeec-----------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc-ccccCccceeeeEEEEeccCC
Confidence 9988888888 9999999999999999999999999999998654211 1000 1112477999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC-CCCcccchhcccCCcCcccccCCCcEEEEEeCCCCC-CCEEEEEcC-ceEEEEeCCC
Q 007489 431 QNNNVLIITTSSNQVYVFDVE-AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS-SSSVIIYSA-RAMCVIDFGR 506 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~~~~~~~~~-~~~~~~~~~~ 506 (601)
+++.+ ....+ +.+|+.. ++. ++..+.+|...|.+++|+|++. ...+...+. ..+.++++..
T Consensus 454 -~g~~~-~~~~~--~~~~~~~~~g~-----------~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 454 -KDDKY-RIDSS--YEVYPLTVNDV-----------SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -SSCEE-EECCC--CCCCC------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred -CCCeE-EccCC--ceecccccCCc-----------ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 88744 22222 2333322 122 3456788999999999999943 224444444 4466666643
No 81
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-35 Score=296.40 Aligned_cols=282 Identities=14% Similarity=0.088 Sum_probs=210.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCccchhhhcc--c
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHS--F 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~~~~~~~~~--~ 76 (601)
+||+|+.||+|+|||+.+++....+.. .+|.+.|++|+|+| ++ +|++|+.||+|++||++++....... .
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 207 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT 207 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC
Confidence 589999999999999988766554442 28999999999998 56 99999999999999998654432222 3
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
+...+.+++|+|++++|++|+.||.|++||+++.. +..+.+|...|.+++|+ |
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~------------------~~~~~~h~~~v~~v~~~---------p 260 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE------------------LWNLRMHKKKVTHVALN---------P 260 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB------------------CCCSBCCSSCEEEEEEC---------T
T ss_pred CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce------------------eEEEecccceEEeeeec---------C
Confidence 44568899999999999999999999999997654 56788999999999998 7
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++. .+|++|+.|+.|++||++.........
T Consensus 261 ~~~-----------------------~~~~s~s~d~~v~iwd~~~~~~~~~~~--------------------------- 290 (435)
T 4e54_B 261 CCD-----------------------WFLATASVDQTVKIWDLRQVRGKASFL--------------------------- 290 (435)
T ss_dssp TCS-----------------------SEEEEEETTSBCCEEETTTCCSSSCCS---------------------------
T ss_pred CCc-----------------------eEEEEecCcceeeEEecccccccceEE---------------------------
Confidence 765 488999999999999988633211110
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
....|...|.+++|+|+|++|++ +.|+.|++|++.. +.....+
T Consensus 291 ---------------------------------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~---~~~~~~~ 334 (435)
T 4e54_B 291 ---------------------------------YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ---WDCPLGL 334 (435)
T ss_dssp ---------------------------------BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS---SSSEEEE
T ss_pred ---------------------------------EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC---CccceEE
Confidence 01134578999999999999999 7899999999986 3332111
Q ss_pred eeecC-CcCccceeEEEEccCCCeEEEEe------------cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeE
Q 007489 316 NKRQL-PRKLQFAHSMIFSYDSSQLIIAG------------HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 382 (601)
Q Consensus 316 ~~~~~-~~~~~~v~~i~~s~d~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 382 (601)
..... ......+....|+|++.+++++. .++.|++||..+++.+..+... |...|.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~----------~~~~v~s 404 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP----------ESSGISS 404 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS----------SCCCCCC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC----------CCCcEEE
Confidence 11110 00011223446677766666654 2357999999999988887643 7788888
Q ss_pred E-EEccCCCEEEEEecCCeEEEEEcCCceEE
Q 007489 383 M-FTSSDGQWLAAVNCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 383 l-~~spd~~~las~~~dg~i~iwd~~~~~~~ 412 (601)
+ +|||+|++||+|+ |+.|+||+++.++..
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 7 6999999999886 789999999988753
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=276.14 Aligned_cols=265 Identities=17% Similarity=0.153 Sum_probs=224.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc---chhhhccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---TLLQAHSF 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~---~~~~~~~~ 76 (601)
+|++|+.||.|++||+.+++....+. .|...|.+++|+|++ .|++++.||.|++|++... +.+..+.+
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVY--------TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEE--------ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEee--------cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 48999999999999999999998888 799999999999999 9999999999999998654 56777889
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
|...|.+++| ++++|++++.|+.|++|| .+.. ...+..|...+.++++. |
T Consensus 103 ~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~-----------------~~~~~~~~~~v~~~~~~---------~ 152 (313)
T 3odt_A 103 HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL-----------------VYNLQAHNASVWDAKVV---------S 152 (313)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE-----------------EEEEECCSSCEEEEEEE---------E
T ss_pred cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE-----------------EEecccCCCceeEEEEc---------c
Confidence 9999999999 578999999999999999 3221 55677899999999987 5
Q ss_pred -cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 157 -EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 157 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
++. .+++++.|+.|++||...
T Consensus 153 ~~~~------------------------~l~~~~~d~~i~i~d~~~---------------------------------- 174 (313)
T 3odt_A 153 FSEN------------------------KFLTASADKTIKLWQNDK---------------------------------- 174 (313)
T ss_dssp TTTT------------------------EEEEEETTSCEEEEETTE----------------------------------
T ss_pred CCCC------------------------EEEEEECCCCEEEEecCc----------------------------------
Confidence 554 999999999999999432
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
....+...+...+.+++++|++.+++.+.++.|++|++.. +..+
T Consensus 175 ------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~---~~~~--- 218 (313)
T 3odt_A 175 ------------------------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHT---GDVL--- 218 (313)
T ss_dssp ------------------------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTT---CCEE---
T ss_pred ------------------------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCc---hhhh---
Confidence 1222222356789999999999955558999999999975 4443
Q ss_pred eeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 316 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 316 ~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
..+..|...|.+++|+|++ +|++++.||.|++||+.+++.+..+.. |...|.+++|+|+++ ++++
T Consensus 219 --~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~-~~~~ 283 (313)
T 3odt_A 219 --RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL-----------PAISIWSVDCMSNGD-IIVG 283 (313)
T ss_dssp --EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC-----------SSSCEEEEEECTTSC-EEEE
T ss_pred --hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec-----------cCceEEEEEEccCCC-EEEE
Confidence 3345678899999999999 689999999999999999999999987 888999999999999 5578
Q ss_pred ecCCeEEEEEcCCceEE
Q 007489 396 NCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 396 ~~dg~i~iwd~~~~~~~ 412 (601)
+.||.|++|++.+++..
T Consensus 284 ~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 284 SSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ETTSCEEEEESCGGGCC
T ss_pred eCCCcEEEEeCCCCcee
Confidence 99999999999987754
No 83
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=273.22 Aligned_cols=271 Identities=15% Similarity=0.155 Sum_probs=222.1
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
||+| .|++|+|||+.+|++++.+... +|...|++|+|+|++ +|++|+.||.|++||+.+++++..+.+|...
T Consensus 39 lAvg-~D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~ 111 (318)
T 4ggc_A 39 LAVA-LDNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 111 (318)
T ss_dssp EEEE-ETTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EEEE-eCCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce
Confidence 4554 5999999999999999988742 788999999999999 9999999999999999999999999999998
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
+.++.+ ++..+++++.++.+++|+...... ....+.+|...+..+++. ++++
T Consensus 112 ~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---------~~~~- 163 (318)
T 4ggc_A 112 VGSLSW--NSYILSSGSRSGHIHHHDVRVAEH----------------HVATLSGHSQEVCGLRWA---------PDGR- 163 (318)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEETTSSSC----------------EEEEEECCSSCEEEEEEC---------TTSS-
T ss_pred EEEeec--CCCEEEEEecCCceEeeecCCCce----------------eEEEEcCccCceEEEEEc---------CCCC-
Confidence 877655 578999999999999999887643 245677899999999998 7776
Q ss_pred cccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
.|++++.|+.|++||+.+.+......
T Consensus 164 -----------------------~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------- 189 (318)
T 4ggc_A 164 -----------------------HLASGGNDNLVNVWPSAPGEGGWVPL------------------------------- 189 (318)
T ss_dssp -----------------------EEEEEETTSCEEEEESSCBTTBSCCS-------------------------------
T ss_pred -----------------------EEEEEecCcceeEEECCCCcccccce-------------------------------
Confidence 99999999999999988633211110
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE-E--E-EcCCccEEEEeecCCCCcceEEEe
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF-A--Y-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~--~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
.....+...|.+++++|++..+ . + +.++.|++|+... ....
T Consensus 190 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~---~~~~---- 234 (318)
T 4ggc_A 190 ----------------------------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACL---- 234 (318)
T ss_dssp ----------------------------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---CCEE----
T ss_pred ----------------------------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---cccc----
Confidence 1112234678889998876433 2 2 3678899999875 2221
Q ss_pred eecCCcCccceeEEEEccCCCeEEEEe--cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 317 KRQLPRKLQFAHSMIFSYDSSQLIIAG--HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~d~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
....+...+..+.|+|++..+++++ .|+.|++||+.+++++.++.+ |...|++++|+||+++||+
T Consensus 235 --~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----------H~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 235 --SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp --EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSCEEE
T ss_pred --ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCCCEEEE
Confidence 1223455789999999999988765 789999999999999999998 9999999999999999999
Q ss_pred EecCCeEEEEEcCCc
Q 007489 395 VNCFGDVYIFNLEIQ 409 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~ 409 (601)
|+.||+|+|||+...
T Consensus 302 ~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 302 AAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTEEEEECCSCC
T ss_pred EecCCeEEEEECCCC
Confidence 999999999998754
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-34 Score=283.80 Aligned_cols=278 Identities=15% Similarity=0.106 Sum_probs=218.6
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCccchhhhccc--
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSF-- 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 76 (601)
+||+|+.||.|+|||+.+++....+.. .+|...|.+++|+| ++ .|++++.|+.|++||+.+ ..+..+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~ 160 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD 160 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC
Confidence 489999999999999999988877752 16999999999999 56 899999999999999985 55555543
Q ss_pred -cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 77 -HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 77 -h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
|...|.+++|+|++++|++|+.|+.|++||+.... ...+..|...|.+++|+
T Consensus 161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------~~~~~~h~~~v~~~~~~--------- 213 (383)
T 3ei3_B 161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE------------------IFKEKLHKAKVTHAEFN--------- 213 (383)
T ss_dssp CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE------------------EEEEECSSSCEEEEEEC---------
T ss_pred CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE------------------EEEeccCCCcEEEEEEC---------
Confidence 45889999999999999999999999999995332 56778899999999998
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
|+++ .+|++++.|+.|++||+.+.....
T Consensus 214 ~~~~-----------------------~~l~s~~~d~~i~iwd~~~~~~~~----------------------------- 241 (383)
T 3ei3_B 214 PRCD-----------------------WLMATSSVDATVKLWDLRNIKDKN----------------------------- 241 (383)
T ss_dssp SSCT-----------------------TEEEEEETTSEEEEEEGGGCCSTT-----------------------------
T ss_pred CCCC-----------------------CEEEEEeCCCEEEEEeCCCCCccc-----------------------------
Confidence 7764 389999999999999998622100
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~ 313 (601)
..+..+ .+...|.+++|+| ++++|++ +.|+.|++|++........+
T Consensus 242 -----------------------------~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~- 289 (383)
T 3ei3_B 242 -----------------------------SYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI- 289 (383)
T ss_dssp -----------------------------CEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE-
T ss_pred -----------------------------ceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc-
Confidence 011122 3568899999999 9999998 68999999999863222211
Q ss_pred EEeeecCCcCc----------cceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEE
Q 007489 314 IINKRQLPRKL----------QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 314 ~~~~~~~~~~~----------~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
.........+. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+. |...+..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~---------~~~~~~~~ 358 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN---------AAGIISLN 358 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT---------BCSCCCEE
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC---------CCceEEEE
Confidence 11111111222 23445677777766 77889999999999999999998643 46778888
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCC
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
+|+|++++|++++ ||.|+|||+++
T Consensus 359 ~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 359 KFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999997 99999999875
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=288.36 Aligned_cols=320 Identities=13% Similarity=0.166 Sum_probs=226.6
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc-----------hhhhccccc------------cceEEEEEeCCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-----------LLQAHSFHK------------GDVNALAAAPSH 90 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~h~------------~~V~~l~~s~~~ 90 (601)
.|.+.|++++|+|+| +||+|+.||.|+|||+.+++ +...+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478899999999999 99999999999999999877 477888998 889999999998
Q ss_pred --CEEEEEeeCCeEEEEEeccCcCCCCC-----------------CCCCcc-ccceeE----Ee-cCccccccceeEEEe
Q 007489 91 --NRVFSTGSDGQVILYKASCESIGPND-----------------GLSSSE-VIKKWI----YV-GSVRAHTHDVRALTV 145 (601)
Q Consensus 91 --~~l~s~~~dg~i~vw~~~~~~~~~~~-----------------~~~~~~-~~~~~~----~~-~~~~~h~~~v~~l~~ 145 (601)
.+|++++.|+.|++|++..+...... .+.... ....+. .. ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999999874420000 000000 000000 01 113578999999999
Q ss_pred eccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecc
Q 007489 146 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 225 (601)
Q Consensus 146 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (601)
+ |+++ .|++| .|+.|++||+....
T Consensus 186 ~---------~~~~------------------------~l~s~-~d~~i~iwd~~~~~---------------------- 209 (447)
T 3dw8_B 186 N---------SDYE------------------------TYLSA-DDLRINLWHLEITD---------------------- 209 (447)
T ss_dssp C---------TTSS------------------------EEEEE-CSSEEEEEETTEEE----------------------
T ss_pred c---------CCCC------------------------EEEEe-CCCeEEEEECCCCC----------------------
Confidence 8 8876 89988 79999999987411
Q ss_pred ccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCccEEEEe
Q 007489 226 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKPSLFEL 303 (601)
Q Consensus 226 ~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~~~v~l~~~ 303 (601)
..+.++.+... ....|...|.+++|+|++ ++|++ +.|+.|++||+
T Consensus 210 -------------~~~~~~~~~~~--------------------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 210 -------------RSFNIVDIKPA--------------------NMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp -------------EEEEEEECCCS--------------------SGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred -------------ceeeeeecccc--------------------cccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 00011111100 011345789999999998 88888 68999999999
Q ss_pred ecCCCCc-ceEEEeeecCCcCc------------cceeEEEEccCCCeEEEEecCCcEEEEEcCC-CceeeeeccCcccc
Q 007489 304 KKGKVGQ-GEWIINKRQLPRKL------------QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHTFTPCREEH 369 (601)
Q Consensus 304 ~~~~~~~-~~~~~~~~~~~~~~------------~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~ 369 (601)
+...... .+ ..+..+. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..+....
T Consensus 257 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 257 RASALCDRHS-----KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp TTCSSSCTTC-----EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred cCCcccccee-----eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 8622110 02 2233333 38999999999999999998 9999999987 88888888732100
Q ss_pred ccc----CCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec----------------------------
Q 007489 370 DRE----IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR---------------------------- 417 (601)
Q Consensus 370 ~~~----~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~---------------------------- 417 (601)
... .......+..++|+|++++|++|+.||.|+|||+.+++.......
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence 000 000000133599999999999999999999999998876532110
Q ss_pred ---cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 418 ---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 418 ---~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
.....|.+++|+| ++++||+++.++ +++|.-+
T Consensus 411 ~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEECC
T ss_pred cccccCCceeEEEECC-CCCEEEEEecce-eeeeccc
Confidence 1124688999999 999999998776 8888643
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.1e-34 Score=268.91 Aligned_cols=254 Identities=15% Similarity=0.143 Sum_probs=202.3
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
..+.+|.+.|.+++|+|+|++|++|+.|++|++|++.+... .....+.+|...|.+++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------~~~~~l~gH~~~V~~v~~s----- 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------KLIDTLTGHEGPVWRVDWA----- 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------CCCEEECCCSSCEEEEEEC-----
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------EEEEEEccccCCeEEEEec-----
Confidence 45678999999999999999999999999999999975321 0145778999999999997
Q ss_pred CCCCCc--ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 152 EDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 152 ~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
++ ++ +|++|+.|++|++||+.+....
T Consensus 63 ----~~~~g~------------------------~l~s~s~D~~v~iWd~~~~~~~------------------------ 90 (297)
T 2pm7_B 63 ----HPKFGT------------------------ILASCSYDGKVMIWKEENGRWS------------------------ 90 (297)
T ss_dssp ----CGGGCS------------------------EEEEEETTTEEEEEEBSSSCBC------------------------
T ss_pred ----CCCcCC------------------------EEEEEcCCCEEEEEEcCCCceE------------------------
Confidence 43 44 9999999999999998752100
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeecC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFELKKG 306 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~~ 306 (601)
.+ .....|...|.+++|+|+ +.+|++ +.|+.|++|++...
T Consensus 91 ------------------------------------~~-~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 91 ------------------------------------QI-AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp ------------------------------------CC-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred ------------------------------------EE-EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 00 011234578999999997 888888 79999999999862
Q ss_pred CCCcceEEEeeecCCcCccceeEEEEccC-------------CCeEEEEecCCcEEEEEcCCCc----eeeeeccCcccc
Q 007489 307 KVGQGEWIINKRQLPRKLQFAHSMIFSYD-------------SSQLIIAGHDRRIYVVDVSSSE----LLHTFTPCREEH 369 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~d-------------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~ 369 (601)
.. ... ..+.+|...|.+++|+|+ +++|++|+.|++|++||+.+++ ...++.+
T Consensus 134 ~~-~~~-----~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~----- 202 (297)
T 2pm7_B 134 GT-TSP-----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG----- 202 (297)
T ss_dssp SC-BCC-----EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-----
T ss_pred Cc-eee-----eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC-----
Confidence 11 111 234567889999999997 5799999999999999997765 5566776
Q ss_pred cccCCCCCCCeeEEEEccCC---CEEEEEecCCeEEEEEcCCce---EEEEee-ccCCCceeEEEecCCCCCEEEEEeCC
Q 007489 370 DREIQPSEPPITKMFTSSDG---QWLAAVNCFGDVYIFNLEIQR---QHWFIS-RLEGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~---~~las~~~dg~i~iwd~~~~~---~~~~~~-~~~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
|...|.+++|+|++ ++||+++.|++|+|||+.+.. ....+. ..+...|.+++|+| ++++|++++.|
T Consensus 203 ------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D 275 (297)
T 2pm7_B 203 ------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGD 275 (297)
T ss_dssp ------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETT
T ss_pred ------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCC
Confidence 99999999999995 899999999999999998743 111221 22456899999999 99999999999
Q ss_pred CeEEEEEcCC
Q 007489 443 NQVYVFDVEA 452 (601)
Q Consensus 443 g~v~vwd~~~ 452 (601)
+.|++|+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999864
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.4e-35 Score=281.06 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=200.8
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc--hhhhccccccceEEEEEeC--CCCEEEEEeeCCeEEEEEecc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~~ 109 (601)
+|.+.|++++|+|+| +|++|+.|++|+|||+.+++ ++..+.+|.+.|.+++|++ ++++|++|+.|++|++||+.+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 899999999999999 99999999999999998764 4678899999999999986 489999999999999999987
Q ss_pred CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
+.. .....+.+|...|.+++|+ |++. +.+|++|+
T Consensus 91 ~~~---------------~~~~~~~~h~~~V~~v~~~---------p~~~----------------------g~~lasgs 124 (316)
T 3bg1_A 91 GTW---------------EKSHEHAGHDSSVNSVCWA---------PHDY----------------------GLILACGS 124 (316)
T ss_dssp SCC---------------CEEEEECCCSSCCCEEEEC---------CTTT----------------------CSCEEEEC
T ss_pred Ccc---------------eEEEEccCCCCceEEEEEC---------CCCC----------------------CcEEEEEc
Confidence 541 1245567899999999998 7621 13899999
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
.|+.|++|++........ ..
T Consensus 125 ~D~~i~lwd~~~~~~~~~------------------------------------------------------------~~ 144 (316)
T 3bg1_A 125 SDGAISLLTYTGEGQWEV------------------------------------------------------------KK 144 (316)
T ss_dssp SSSCEEEEEECSSSCEEE------------------------------------------------------------CC
T ss_pred CCCCEEEEecCCCCCcce------------------------------------------------------------ee
Confidence 999999999875211000 00
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 270 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
....|...+.+++|+|++.. +. +.+. ..+ ...+++++|++|+.|+.|+
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~------~~--~~~~----------------~~~--------~~~~~~~~l~sgs~D~~v~ 192 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVP------GS--LIDH----------------PSG--------QKPNYIKRFASGGCDNLIK 192 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------------------------------CCS--------CCCCCCCBEECCBTTSBCC
T ss_pred eeccccCCcceEEEccccCC------cc--cccc----------------ccc--------cCccccceEEEecCCCeEE
Confidence 00123355677778876420 00 0000 000 0112467899999999999
Q ss_pred EEEcCCC---ceeeeeccCcccccccCCCCCCCeeEEEEccCC----CEEEEEecCCeEEEEEcCCce----EEEEeecc
Q 007489 350 VVDVSSS---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDG----QWLAAVNCFGDVYIFNLEIQR----QHWFISRL 418 (601)
Q Consensus 350 vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~----~~las~~~dg~i~iwd~~~~~----~~~~~~~~ 418 (601)
+||+... +.+..+.+ |...|.+++|+|++ ++||+++.||+|+||++.+.. ....+. .
T Consensus 193 lWd~~~~~~~~~~~~l~~-----------h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~ 260 (316)
T 3bg1_A 193 LWKEEEDGQWKEEQKLEA-----------HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-K 260 (316)
T ss_dssp EEEECTTSCEEEEECCBC-----------CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-E
T ss_pred EEEeCCCCccceeeeccc-----------CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-c
Confidence 9999754 35666766 89999999999987 899999999999999997621 111233 2
Q ss_pred CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 419 EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
|...|.+++|+| ++++|++++.|+.|++|+...
T Consensus 261 ~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred CCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 457899999999 999999999999999999863
No 88
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=283.90 Aligned_cols=337 Identities=12% Similarity=0.076 Sum_probs=222.7
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEecc-----CCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCccchhhh
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGL-----GGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQA 73 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~~~~~~~ 73 (601)
+||+|+.||.|++||+.+++....+.... .....+|...|.+++|+| ++ .|++++.||.|++||+.+++.+..
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee
Confidence 48999999999999999876654443110 111236999999999999 55 899999999999999999988877
Q ss_pred ccccccceEEEEEeCC---CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 74 HSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
+. +...+.+++|++. +.++++++.|+.|++||+.++.. ...+..|...|.+++|+
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----------------~~~~~~~~~~v~~~~~~---- 195 (408)
T 4a11_B 138 FN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-----------------SHILQGHRQEILAVSWS---- 195 (408)
T ss_dssp EE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-----------------CEEECCCCSCEEEEEEC----
T ss_pred cc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-----------------eeeecCCCCcEEEEEEC----
Confidence 76 7788999999984 45999999999999999998765 56677899999999998
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|+++ .+|++++.|+.|++||++........
T Consensus 196 -----~~~~-----------------------~ll~~~~~dg~i~i~d~~~~~~~~~~---------------------- 225 (408)
T 4a11_B 196 -----PRYD-----------------------YILATASADSRVKLWDVRRASGCLIT---------------------- 225 (408)
T ss_dssp -----SSCT-----------------------TEEEEEETTSCEEEEETTCSSCCSEE----------------------
T ss_pred -----CCCC-----------------------cEEEEEcCCCcEEEEECCCCCccccc----------------------
Confidence 7775 36999999999999999863311000
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
+......... ........+...|.+++|+|++++|++ +.++.+++|++.. +
T Consensus 226 -------------~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~ 277 (408)
T 4a11_B 226 -------------LDQHNGKKSQ------------AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN---G 277 (408)
T ss_dssp -------------CCTTTTCSCC------------CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---C
T ss_pred -------------ccccccccce------------eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC---C
Confidence 0000000000 000011234678999999999999998 6899999999986 2
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
.................+........+..+++++.++.|++||+.+++.+..+.+ |...|++++|+|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-----------HYKTVDCCVFQSNF 346 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-----------CSSCEEEEEEETTT
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-----------CCCeEEEEEEcCCC
Confidence 2211011111111122222333334456677788899999999999999999988 89999999999999
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
++|++++.||.|++||+.+++......... ....+.+.....+.+.+.++.+++|+...
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVPDDDETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred CEEEEECCCCeEEEEeCCCCCccCCCCceE----eccccccccceeecccCccCceeecCCcc
Confidence 999999999999999999988754433211 22234442444566777889999998653
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-33 Score=282.32 Aligned_cols=275 Identities=12% Similarity=0.170 Sum_probs=228.5
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+|...|.+++| ++ .|++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~- 205 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM- 205 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE-
Confidence 57778999887 67 9999999999999999999999999999999999999 789999999999999999998874
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+..|...|.+++++ + ..+++|+.|+.
T Consensus 206 ----------------~~~~~~h~~~v~~l~~~---------~--------------------------~~l~s~s~dg~ 234 (435)
T 1p22_A 206 ----------------LNTLIHHCEAVLHLRFN---------N--------------------------GMMVTCSKDRS 234 (435)
T ss_dssp ----------------EEEECCCCSCEEEEECC---------T--------------------------TEEEEEETTSC
T ss_pred ----------------EEEEcCCCCcEEEEEEc---------C--------------------------CEEEEeeCCCc
Confidence 66778899999999974 1 28999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++||+.+.... ........
T Consensus 235 i~vwd~~~~~~~------------------------------------------------------------~~~~~~~~ 254 (435)
T 1p22_A 235 IAVWDMASPTDI------------------------------------------------------------TLRRVLVG 254 (435)
T ss_dssp EEEEECSSSSCC------------------------------------------------------------EEEEEECC
T ss_pred EEEEeCCCCCCc------------------------------------------------------------eeeeEecC
Confidence 999998752210 11122334
Q ss_pred CCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
|...|.++++ +++++++ +.|+.|++||+.. +..+ ..+..|...|.++++ +++++++|+.||.|++||
T Consensus 255 ~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~---~~~~-----~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd 322 (435)
T 1p22_A 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTST---CEFV-----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 322 (435)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTT---CCEE-----EEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc---CcEE-----EEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 5678888888 6788888 6899999999986 4443 334567788999988 478999999999999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce---------EEEEeeccCCCce
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR---------QHWFISRLEGASV 423 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v 423 (601)
+.+++.+.++.+ |...|.+++| ++++|++|+.||.|++||+.+++ ....+.. |...|
T Consensus 323 ~~~~~~~~~~~~-----------h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-h~~~v 388 (435)
T 1p22_A 323 IECGACLRVLEG-----------HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HSGRV 388 (435)
T ss_dssp TTTCCEEEEECC-----------CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-CSSCC
T ss_pred CCCCCEEEEEeC-----------CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-CCCCe
Confidence 999999999988 8999999999 88999999999999999997765 5555553 55789
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 424 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
++++| ++.+|++++.||.|++||+.+..
T Consensus 389 ~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 389 FRLQF---DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp CCEEE---CSSCEEECCSSSEEEEEC-----
T ss_pred EEEEe---CCCEEEEEeCCCEEEEEECCCCC
Confidence 99999 45789999999999999998865
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=280.21 Aligned_cols=306 Identities=14% Similarity=0.176 Sum_probs=230.3
Q ss_pred EEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC---C-eEEEEcCCCcEEEeeCCc-cchh-hhccccccceEEEEE
Q 007489 13 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G-TLVSADSTGSVQFWDSRH-GTLL-QAHSFHKGDVNALAA 86 (601)
Q Consensus 13 iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~---g-~l~s~~~dg~i~vwd~~~-~~~~-~~~~~h~~~V~~l~~ 86 (601)
.|+....+.+..+. +|...|++++|+|+ | .|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|
T Consensus 23 ~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 23 TDNHNPMKDIEVTS--------SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCW 94 (368)
T ss_dssp CCSSCTTCCEECSS--------CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCCcceeEecc--------CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEE
Confidence 34444555555555 89999999999999 6 899999999999999987 5544 778899999999999
Q ss_pred eCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEe--eccccCCCCCCcccccccC
Q 007489 87 APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV--AVPISREDPLPEDKVKRSR 164 (601)
Q Consensus 87 s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~d~~~~~~~ 164 (601)
+|++++|++++.||.|++||+.++.. ..+..|...|.+++| + |+++
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~------------------~~~~~~~~~v~~~~~~~~---------~~~~----- 142 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQA------------------IQIAQHDAPVKTIHWIKA---------PNYS----- 142 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEE------------------EEEEECSSCEEEEEEEEC---------SSCE-----
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCc------------------eeeccccCceEEEEEEeC---------CCCC-----
Confidence 99999999999999999999998763 346679999999999 5 6765
Q ss_pred CCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEe
Q 007489 165 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL 244 (601)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~ 244 (601)
+|++++.|+.|++||+++.....
T Consensus 143 -------------------~l~~~~~dg~i~vwd~~~~~~~~-------------------------------------- 165 (368)
T 3mmy_A 143 -------------------CVMTGSWDKTLKFWDTRSSNPMM-------------------------------------- 165 (368)
T ss_dssp -------------------EEEEEETTSEEEEECSSCSSCSE--------------------------------------
T ss_pred -------------------EEEEccCCCcEEEEECCCCcEEE--------------------------------------
Confidence 99999999999999988632110
Q ss_pred eccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCc
Q 007489 245 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL 324 (601)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (601)
.+.. ...+.++.+.++ ..++.+.++.+++|++.. ....+. .....+.
T Consensus 166 ------------------------~~~~--~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~---~~~~~~~ 212 (368)
T 3mmy_A 166 ------------------------VLQL--PERCYCADVIYP-MAVVATAERGLIVYQLEN---QPSEFR---RIESPLK 212 (368)
T ss_dssp ------------------------EEEC--SSCEEEEEEETT-EEEEEEGGGCEEEEECSS---SCEEEE---ECCCSCS
T ss_pred ------------------------EEec--CCCceEEEecCC-eeEEEeCCCcEEEEEecc---ccchhh---hcccccc
Confidence 1111 134555555543 333447889999999985 222221 1122233
Q ss_pred cceeEEEEccCCCe----EEEEecCCcEEEEEcCCC---ceeeeeccCcccc-cccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 325 QFAHSMIFSYDSSQ----LIIAGHDRRIYVVDVSSS---ELLHTFTPCREEH-DREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 325 ~~v~~i~~s~d~~~----l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
..+.++++.++... +++++.||.|++||+... +.+..+..+.... ......|...|++++|+|++++|++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 45566666666554 999999999999999877 5566666632100 000111233799999999999999999
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
.||.|++||+.+++....+.. |...|++++|+| ++++|++++.|+..+.|++
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNH-NGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCC-CSSCEEEEEECT-TSSCEEEEECCCSTTCGGG
T ss_pred cCCeEEEEECCCCcEEEEecC-CCCCceEEEECC-CCCeEEEEecccccccccc
Confidence 999999999999998877764 557999999999 9999999999875544443
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=287.53 Aligned_cols=302 Identities=10% Similarity=0.077 Sum_probs=229.5
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+|||++.|++|+ |...++.+ . +|...|++|+|+|+| .++.+.+|+.+ +..+..+ .|...
T Consensus 29 ~iASas~D~TV~--d~~~~~~l---~--------gh~~~v~~V~FsPdg------~~~~~~~~~~~-~~~~~~~-~~~~~ 87 (588)
T 2j04_A 29 LYLTTFPDISIG--QPKYAKDI---N--------CNSKNLFHVKEFPLE------FENKLDFELAQ-QNGLLNS-QPVCY 87 (588)
T ss_dssp EEEECSSSEEEE--EECCCSCC---S--------SBGGGTEEEEEECCC------CCCTTTTSCCC-SSCSSTT-SCSCC
T ss_pred EEEEEcCCceee--ccccccee---c--------CCCccEEEEEECCCC------CcceEEEEeCC-CceEeec-CCCCc
Confidence 489999999999 76666543 3 899999999999998 55666666544 2233333 45889
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc-----ceeEEEeeccccCCCCC
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-----DVRALTVAVPISREDPL 155 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~~~ 155 (601)
|.+++|||+|++|++++.||.|++|+..+ . +..+. |.. .+.+++|+
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~------------------l~~l~-~~~~~~~~sv~svafS--------- 138 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK-M------------------LTNLD-SKGNLSSRTYHCFEWN--------- 138 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE-E------------------EEECC-CSSCSTTTCEEEEEEC---------
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc-e------------------eeecc-CCCccccccEEEEEEc---------
Confidence 99999999999999999999999999544 1 34444 544 59999999
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
|||+ +|++|+.||+|++|++.......+ .
T Consensus 139 PDG~------------------------~LAsgs~DGtVkIWd~~~~~l~~~-~-------------------------- 167 (588)
T 2j04_A 139 PIES------------------------SIVVGNEDGELQFFSIRKNSENTP-E-------------------------- 167 (588)
T ss_dssp SSSS------------------------CEEEEETTSEEEEEECCCCTTTCC-C--------------------------
T ss_pred CCCC------------------------EEEEEcCCCEEEEEECCCCccccc-c--------------------------
Confidence 9998 999999999999999886211000 0
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE---ecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcce
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK---SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~ 312 (601)
.-.+..+. .+|...|.+++|+|+| +++++.|+.+++|++..... ...
T Consensus 168 ----------------------------~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~-~~~ 217 (588)
T 2j04_A 168 ----------------------------FYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH-QPV 217 (588)
T ss_dssp ----------------------------CEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS-CCC
T ss_pred ----------------------------ceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc-ccc
Confidence 00122221 3356789999999999 66668999999999975211 001
Q ss_pred EEEeeecC-CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEE--ccCC
Q 007489 313 WIINKRQL-PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDG 389 (601)
Q Consensus 313 ~~~~~~~~-~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spd~ 389 (601)
+ ..+ ..|...|.+++|+ +++||+++ +++|++||+.+++......+ |...|..++| +||+
T Consensus 218 ~----~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g-----------h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 218 S----RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG-----------SLENFHIIPLNHEKES 279 (588)
T ss_dssp E----EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS-----------CCSCCCEEEETTCSSC
T ss_pred e----eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC-----------CCceEEEEEeeeCCCC
Confidence 1 223 3677889999999 68999887 69999999987776433335 8999999999 9999
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcc
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRR 469 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 469 (601)
+.|++++.||+ ++|..+ .++|+| ++..+++. |+++++|+...+.+ ..
T Consensus 280 ~~La~a~edG~-klw~~d-----------------~~~~sp-d~~l~a~~--d~~v~lW~~~g~~l------------~~ 326 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLED-----------------ELHVTA-DNIIAPYL--EKKFKKWSTIWNEF------------NN 326 (588)
T ss_dssp EEEEECSSCEE-EEEESS-----------------SEEEEC-CCSSHHHH--HHHHHHTTTTTTSS------------SS
T ss_pred CEEEEEcCCCC-EEEeec-----------------cEEECC-CceEEEEc--CCEEEEEECCCCce------------ee
Confidence 99999999999 999877 156999 88777664 99999999866543 12
Q ss_pred cccCCCcEEEEEeCCC
Q 007489 470 YQEFPGEVIGLSFSPS 485 (601)
Q Consensus 470 ~~~~~~~v~~i~~~p~ 485 (601)
+.+ ...|.+++|+|+
T Consensus 327 ~~~-~~~I~~va~SPd 341 (588)
T 2j04_A 327 YET-TLVIHGISLSPD 341 (588)
T ss_dssp SCC-EEEEEEEEECTT
T ss_pred ecc-ceEEEEEEECCC
Confidence 333 667999999999
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-34 Score=284.17 Aligned_cols=293 Identities=10% Similarity=0.149 Sum_probs=217.7
Q ss_pred EeeCC-eEEEEcCCCcEEEeeCCccchhhhc-cccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCc
Q 007489 45 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 121 (601)
Q Consensus 45 ~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 121 (601)
|+|++ .+++++ .|+.. ++++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+......
T Consensus 35 f~~~~~~~~~~~------~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------ 101 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV------ 101 (437)
T ss_dssp GCCCCCCCCCCC------GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC------
T ss_pred cCCccccccccc------ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc------
Confidence 56666 455444 49854 8888888 88999999999999 999999999999999999987221000
Q ss_pred cccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc
Q 007489 122 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 201 (601)
Q Consensus 122 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~ 201 (601)
+. ......|...|.+++|+ |+++ .|++++.|+.|++||+..
T Consensus 102 -----~~-~~~~~~h~~~v~~~~~~---------~~~~------------------------~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 102 -----YS-SSLTYDCSSTVTQITMI---------PNFD------------------------AFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp -----CS-CSEEEECSSCEEEEEEC---------TTSS------------------------EEEEEETTSEEEEEEEEE
T ss_pred -----cc-eeeeccCCCCEEEEEEe---------CCCC------------------------EEEEEeCCCEEEEEEecc
Confidence 00 01112589999999998 8776 999999999999999863
Q ss_pred cCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEE
Q 007489 202 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 281 (601)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 281 (601)
...-.... ......+..+.+++++ +...+.++
T Consensus 143 ~~~~~~~~------~~~~~~i~~~~~~~~~------------------------------------------~~~~~~~~ 174 (437)
T 3gre_A 143 YQQESEVK------FLNCECIRKINLKNFG------------------------------------------KNEYAVRM 174 (437)
T ss_dssp EEETTEEE------EEEEEEEEEEEGGGGS------------------------------------------SCCCEEEE
T ss_pred ccCCceee------ccccceeEEEEccCcc------------------------------------------cccCceEE
Confidence 10000000 0000011111111100 24567777
Q ss_pred E--EcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce
Q 007489 282 T--ISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL 358 (601)
Q Consensus 282 ~--~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~ 358 (601)
. +++++.+|++ +.++.|++||+.. +..+.. .....|...|++++|+|++++|++|+.||.|++||+.++++
T Consensus 175 ~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 175 RAFVNEEKSLLVALTNLSRVIIFDIRT---LERLQI---IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp EEEECSSCEEEEEEETTSEEEEEETTT---CCEEEE---EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC---CeeeEE---EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 7 6789999998 6899999999976 444322 22223778999999999999999999999999999999999
Q ss_pred eeeeccCcccccccCCCCCCCeeEEEEc----cCCCEEEEEecCCeEEEEEcCCceEEEEeecc----------------
Q 007489 359 LHTFTPCREEHDREIQPSEPPITKMFTS----SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL---------------- 418 (601)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s----pd~~~las~~~dg~i~iwd~~~~~~~~~~~~~---------------- 418 (601)
+.++... |...|++++|+ |++++|++++.||.|+|||+.+++....+...
T Consensus 249 ~~~~~~~----------~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 249 IRSWSFG----------DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EEEEBCT----------TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEEEecC----------CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 8888621 77789999665 56889999999999999999999887766532
Q ss_pred ---------CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 419 ---------EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 419 ---------~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
|...|++++|++ +++|++++.|+.|++||+.+++.
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGG
T ss_pred ccceecccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCccc
Confidence 345688899985 58999999999999999998764
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-32 Score=268.17 Aligned_cols=305 Identities=15% Similarity=0.170 Sum_probs=236.4
Q ss_pred ccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 74 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
+..|..+|.+++|+|++++|++++.|+.|++|++.+++ +.....+..|...|.+++|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------------~~~~~~~~~h~~~v~~~~~~------- 61 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------------WVQVHELKEHNGQVTGVDWA------- 61 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------------EEEEEEEECCSSCEEEEEEE-------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------------EEeeeeecCCCCcccEEEEe-------
Confidence 45689999999999999999999999999999998864 22266778899999999999
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
|+++ +|++++.|+.|++||+.+...
T Consensus 62 --~~~~------------------------~l~~~~~dg~i~vwd~~~~~~----------------------------- 86 (372)
T 1k8k_C 62 --PDSN------------------------RIVTCGTDRNAYVWTLKGRTW----------------------------- 86 (372)
T ss_dssp --TTTT------------------------EEEEEETTSCEEEEEEETTEE-----------------------------
T ss_pred --CCCC------------------------EEEEEcCCCeEEEEECCCCee-----------------------------
Confidence 8876 999999999999999865210
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcce
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
........+...|.+++|+|++++|++ +.++.+++|++.. ...
T Consensus 87 --------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~---~~~- 130 (372)
T 1k8k_C 87 --------------------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ---END- 130 (372)
T ss_dssp --------------------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET---TTT-
T ss_pred --------------------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC---CCc-
Confidence 000011234578999999999999998 6899999999986 222
Q ss_pred EEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC------------------CCceeeeeccCcccccccCC
Q 007489 313 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS------------------SSELLHTFTPCREEHDREIQ 374 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~~~~~~ 374 (601)
+.........|...|.+++|+|++++|++++.||.|++||+. .++.+..+..
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 200 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---------- 200 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----------
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC----------
Confidence 112223446678899999999999999999999999999953 5667777766
Q ss_pred CCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC--
Q 007489 375 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA-- 452 (601)
Q Consensus 375 ~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~-- 452 (601)
|...|.+++|+|++++|++++.||.|++||+.+++....+.. |...|.+++|+| ++.+|+++ .|+.|++|++..
T Consensus 201 -~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~ 276 (372)
T 1k8k_C 201 -SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAA 276 (372)
T ss_dssp -CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTT
T ss_pred -CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-CCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcC
Confidence 889999999999999999999999999999999998877764 456899999999 88877777 899999999988
Q ss_pred CCcc--------------------cchhcc-cCCcC------ccc-ccCCCcEEEEEeCCCCCC---CEEEEEc-CceEE
Q 007489 453 KQLG--------------------EWSMQH-TFVLP------RRY-QEFPGEVIGLSFSPSPSS---SSVIIYS-ARAMC 500 (601)
Q Consensus 453 ~~~~--------------------~~~~~~-~~~~~------~~~-~~~~~~v~~i~~~p~~~~---~~~~~~~-~~~~~ 500 (601)
++.. .|.... ..... ..+ .+|...|.+++|.+. .+ ..++..+ +..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 277 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG-GKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES-TTTSCSEEEEEETTSEEE
T ss_pred ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC-CCcceeeEEEecCCCceE
Confidence 4311 110000 00010 223 489999999997755 23 4555554 55677
Q ss_pred EEeCCC
Q 007489 501 VIDFGR 506 (601)
Q Consensus 501 ~~~~~~ 506 (601)
++++..
T Consensus 356 ~W~~~~ 361 (372)
T 1k8k_C 356 IWDVRS 361 (372)
T ss_dssp EEEHHH
T ss_pred EEEecC
Confidence 788643
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-35 Score=285.28 Aligned_cols=300 Identities=9% Similarity=0.053 Sum_probs=212.1
Q ss_pred CEEeeecCCcEEEEECCCC--ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccc---hhhhc
Q 007489 1 MLYSGSSDGYIRSWDAKLG--YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT---LLQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~---~~~~~ 74 (601)
+||+|+.||.|+|||+.++ +.+..+. +|...|++++|+|++ +|++++.|+.|++||+.+++ ....+
T Consensus 25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDGNGWKHARTFS--------DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp EEECCCSSSCBCEEEEETTEEEECCCBC--------CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred EEEEecCCCEEEEEEccCCceEEEEEEe--------cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 4899999999999999988 6666666 899999999999999 99999999999999999877 56677
Q ss_pred cccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc-cccceeEEEeeccccCCC
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISRED 153 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~ 153 (601)
.+|...|.+++|+|++++|++++.|+.|++||+.++.. |.....+.. |...|.+++|+
T Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~h~~~v~~~~~~------- 155 (377)
T 3dwl_C 97 LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--------------WWVSKHLKRPLRSTILSLDWH------- 155 (377)
T ss_dssp CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------------------CCCCEEECSSCCSCEEEEEEC-------
T ss_pred cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--------------ceeeeEeecccCCCeEEEEEc-------
Confidence 78999999999999999999999999999999988652 111345555 99999999998
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 233 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (601)
|+++ +|++++.|+.|++||+............
T Consensus 156 --~~~~------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------------- 187 (377)
T 3dwl_C 156 --PNNV------------------------LLAAGCADRKAYVLSAYVRDVDAKPEAS---------------------- 187 (377)
T ss_dssp --TTSS------------------------EEEEEESSSCEEEEEECCSSCC-CCCSC----------------------
T ss_pred --CCCC------------------------EEEEEeCCCEEEEEEEEecccCCCcccc----------------------
Confidence 8886 9999999999999998753211111000
Q ss_pred EEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcce
Q 007489 234 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 234 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~ 312 (601)
.|.... ...+.+..+ .|...|.+++|+|++++|++ +.|+.|++|++.. +...
T Consensus 188 ---------~~~~~~-------------~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~---~~~~ 240 (377)
T 3dwl_C 188 ---------VWGSRL-------------PFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA---PEQP 240 (377)
T ss_dssp ---------SSCSCC-------------CEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS---TTSC
T ss_pred ---------cccccc-------------chhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC---CCCc
Confidence 000000 000122222 66788999999999999988 6899999999986 3221
Q ss_pred EEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc--eeeeeccCcc-----------------------
Q 007489 313 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCRE----------------------- 367 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~----------------------- 367 (601)
. .....+..|...|.+++|+|++++|++++.++.+ +|+..... ....+.....
T Consensus 241 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 241 P-RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp E-EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred c-eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 0 0014456778899999999999999998866655 77664221 1111111000
Q ss_pred ----------------cccccCCCCCCCeeEEEEccCC-C---EEEEEecCCeEEEEEc
Q 007489 368 ----------------EHDREIQPSEPPITKMFTSSDG-Q---WLAAVNCFGDVYIFNL 406 (601)
Q Consensus 368 ----------------~~~~~~~~~~~~i~~l~~spd~-~---~las~~~dg~i~iwd~ 406 (601)
........|...|+++++.++. . .|++++.||.|+|||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0001112389999999976643 3 6999999999999985
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=280.53 Aligned_cols=360 Identities=11% Similarity=0.124 Sum_probs=236.2
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc------------cceeEE
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT------------HDVRAL 143 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l 143 (601)
.|.+.|.+++|+|+|++|++|+.||.|++|++.++.... ......+.....+.+|. ..|.++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------cccccceeEecccccccccccccccccccCceEEE
Confidence 378899999999999999999999999999998765210 01122344566777888 889999
Q ss_pred EeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcc--ceee
Q 007489 144 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV--PIHL 221 (601)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 221 (601)
+|+ |++. ...|++++.|+.|++|++.................. ....
T Consensus 100 ~~~---------~~~~----------------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (447)
T 3dw8_B 100 RWL---------PQKN----------------------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTT 148 (447)
T ss_dssp EEC---------CCCS----------------------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCC
T ss_pred EEc---------CCCC----------------------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCccc
Confidence 998 7751 028999999999999998763321000000000000 0000
Q ss_pred eecccc---CCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCcc
Q 007489 222 VHNTIF---SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP 298 (601)
Q Consensus 222 ~~~~~~---~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v 298 (601)
+..+.+ .+.+ +.+. ......+...|...|.+++|+|++++|+++.|+.|
T Consensus 149 ~~~~~~~~~~~~~------------~~~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i 200 (447)
T 3dw8_B 149 VTTLRVPVFRPMD------------LMVE----------------ASPRRIFANAHTYHINSISINSDYETYLSADDLRI 200 (447)
T ss_dssp CCSCCCCEEEEEE------------EEEE----------------EEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEE
T ss_pred ccceEeccccchh------------eeee----------------ccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeE
Confidence 000000 0000 0000 00122333467889999999999999999999999
Q ss_pred EEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC-CeEEEEecCCcEEEEEcCCCce----eeeeccCcccc-ccc
Q 007489 299 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSEL----LHTFTPCREEH-DRE 372 (601)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~-~~~ 372 (601)
++|++.........+.+....+..|...|.+++|+|++ ++|++|+.||.|++||+.+++. +..+..+.... ...
T Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (447)
T 3dw8_B 201 NLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSF 280 (447)
T ss_dssp EEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCH
T ss_pred EEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccccc
Confidence 99999741111111111112456788899999999998 9999999999999999998876 67777621000 000
Q ss_pred CCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC-ceEEEEeeccCC--C------------ceeEEEecCCCCCEEE
Q 007489 373 IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-QRQHWFISRLEG--A------------SVTAAGFPPQNNNVLI 437 (601)
Q Consensus 373 ~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~--~------------~v~~l~~~p~~~~~l~ 437 (601)
...|...|.+++|+|++++|++++. +.|+|||+.. ++....+..+.. . .+..++|+| ++++|+
T Consensus 281 ~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~ 358 (447)
T 3dw8_B 281 FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVM 358 (447)
T ss_dssp HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEE
T ss_pred ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC-CCCEEE
Confidence 0001238999999999999999999 9999999987 665544543211 0 133499999 999999
Q ss_pred EEeCCCeEEEEEcCCCCcccchhcccC---------------------CcCcccccCCCcEEEEEeCCCCCCCEEEEEcC
Q 007489 438 ITTSSNQVYVFDVEAKQLGEWSMQHTF---------------------VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 496 (601)
Q Consensus 438 ~~~~dg~v~vwd~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~ 496 (601)
+++.||.|++||+.+++.......... ........+...|..++|+|+ ++.+.+...
T Consensus 359 s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~--~~~la~~~~ 436 (447)
T 3dw8_B 359 TGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPK--ENIIAVATT 436 (447)
T ss_dssp EECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSS--SSEEEEECS
T ss_pred EeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCC--CCEEEEEec
Confidence 999999999999998865322111000 000001134567899999998 677777778
Q ss_pred ceEEEEeC
Q 007489 497 RAMCVIDF 504 (601)
Q Consensus 497 ~~~~~~~~ 504 (601)
+.++++.-
T Consensus 437 ~~~~~~~~ 444 (447)
T 3dw8_B 437 NNLYIFQD 444 (447)
T ss_dssp SCEEEEEC
T ss_pred ceeeeecc
Confidence 88887763
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-33 Score=272.79 Aligned_cols=255 Identities=14% Similarity=0.168 Sum_probs=210.3
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC--ccchhhhccccccceEEEEEeCC--CCEEEEEeeCCeEEEEEecc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vw~~~~ 109 (601)
+|...|++++|+|++ +|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +++|++|+.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 899999999999999 99999999999999997 67778889999999999999987 99999999999999999998
Q ss_pred CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc--ccccccCCCCccccccccccccCCCCEEEE
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
+. +.....+..|...|.+++|+ |+ +. .|++
T Consensus 89 ~~---------------~~~~~~~~~~~~~v~~~~~~---------~~~~~~------------------------~l~~ 120 (379)
T 3jrp_A 89 GR---------------WSQIAVHAVHSASVNSVQWA---------PHEYGP------------------------LLLV 120 (379)
T ss_dssp TE---------------EEEEEEECCCSSCEEEEEEC---------CGGGCS------------------------EEEE
T ss_pred Cc---------------eeEeeeecCCCcceEEEEeC---------CCCCCC------------------------EEEE
Confidence 64 23356777899999999998 77 55 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
++.|+.|++||+...... .
T Consensus 121 ~~~d~~i~v~d~~~~~~~-------------------------------------------------------------~ 139 (379)
T 3jrp_A 121 ASSDGKVSVVEFKENGTT-------------------------------------------------------------S 139 (379)
T ss_dssp EETTSEEEEEECCTTSCC-------------------------------------------------------------C
T ss_pred ecCCCcEEEEecCCCCce-------------------------------------------------------------e
Confidence 999999999998762210 0
Q ss_pred EEEEecCCCCeEEEEEcC-------------CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc
Q 007489 268 VQVKSKASRKIICSTISN-------------SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 333 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~-------------~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 333 (601)
......+...|.+++|+| ++.++++ +.++.|++|++.. +...+.+. ..+..|...|.+++|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTYVLE-STLEGHSDWVRDVAWS 215 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET---TTTEEEEE-EEECCCSSCEEEEEEC
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC---CCcceeeE-EEEecccCcEeEEEEC
Confidence 011224457799999999 6888888 6899999999986 33322222 4566788999999999
Q ss_pred cC---CCeEEEEecCCcEEEEEcCCCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 334 YD---SSQLIIAGHDRRIYVVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 334 ~d---~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
|+ +++|++++.||.|++||+.+++. ...+.. ..|...|++++|+|++++|++++.||.|++|++.
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE---------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS---------SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc---------ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99 89999999999999999987641 112211 1178899999999999999999999999999998
Q ss_pred CceE
Q 007489 408 IQRQ 411 (601)
Q Consensus 408 ~~~~ 411 (601)
....
T Consensus 287 ~~~~ 290 (379)
T 3jrp_A 287 LEGK 290 (379)
T ss_dssp ETTE
T ss_pred CCCc
Confidence 6543
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.7e-34 Score=275.60 Aligned_cols=274 Identities=10% Similarity=0.087 Sum_probs=200.4
Q ss_pred CEEeeecCC-------cEEEEECCCCce--------EEEEEeccCCCCCCCceEEEEEEEeeCCeEE-----------EE
Q 007489 1 MLYSGSSDG-------YIRSWDAKLGYE--------IYRITVGLGGLGSGPELCIWSLLSLRCGTLV-----------SA 54 (601)
Q Consensus 1 ~l~tg~~dg-------~i~iwd~~~~~~--------~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~-----------s~ 54 (601)
+||+|+.|. .|++|++..+.. ...+. +.+|+..|.+++++++ .++ ++
T Consensus 28 ~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~------l~~~~~~v~s~~~~~~-~~~~g~~~~~~~l~s~ 100 (365)
T 4h5i_A 28 LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFA------LEDNDDSPTAIDASKG-IILVGCNENSTKITQG 100 (365)
T ss_dssp EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEE------CCTTSCCCCEEEEETT-EEEEECCCCHHHHHHT
T ss_pred EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEE------ccCCCCceEEEEeCCC-EEEEEECCCccEEEEe
Confidence 477876543 599999875432 22222 2378888988877543 344 44
Q ss_pred cCCCcEEEeeCCccchh---------hhccccccceEEEEEeCCCCEEEEE--eeCCeEEEEEeccCcCCCCCCCCCccc
Q 007489 55 DSTGSVQFWDSRHGTLL---------QAHSFHKGDVNALAAAPSHNRVFST--GSDGQVILYKASCESIGPNDGLSSSEV 123 (601)
Q Consensus 55 ~~dg~i~vwd~~~~~~~---------~~~~~h~~~V~~l~~s~~~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~ 123 (601)
+.|+.+++|++.+.... .....+...+.+++|+|||++++++ +.|++|++||+.++..
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~----------- 169 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE----------- 169 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-----------
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-----------
Confidence 56788999998654321 1122355678999999999998754 4789999999998763
Q ss_pred cceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC
Q 007489 124 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 203 (601)
Q Consensus 124 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~ 203 (601)
...+ .|...|.+++|+ |||+ ++++++.++ +.+|+..+..
T Consensus 170 ------~~~~-~~~~~V~~v~fs---------pdg~------------------------~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 170 ------KFEI-ETRGEVKDLHFS---------TDGK------------------------VVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp ------EEEE-ECSSCCCEEEEC---------TTSS------------------------EEEEECSSC-EEEEETTTCC
T ss_pred ------EEEe-CCCCceEEEEEc---------cCCc------------------------eEEecccee-EEEEEeccCc
Confidence 3333 478889999998 9987 898888655 5555544311
Q ss_pred CcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 007489 204 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 283 (601)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 283 (601)
. ........+...+.+++|
T Consensus 209 ~-------------------------------------------------------------~~~~~~~~~~~~v~~v~f 227 (365)
T 4h5i_A 209 C-------------------------------------------------------------IARKTDFDKNWSLSKINF 227 (365)
T ss_dssp E-------------------------------------------------------------EEEECCCCTTEEEEEEEE
T ss_pred c-------------------------------------------------------------eeeeecCCCCCCEEEEEE
Confidence 0 011112234567899999
Q ss_pred cCCCCEEEE-EcCC----ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce
Q 007489 284 SNSGMLFAY-SDHV----KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL 358 (601)
Q Consensus 284 s~~g~~l~~-~~~~----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~ 358 (601)
+|+++++++ +.++ .+++|++.. ... .......+.+|...|++++|+|||++||+|+.|++|+|||+.++++
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~---~~~-~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKS---GNT-SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEET---TEE-EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred cCCCCEEEEEecCCcceeEEeeccccc---cee-cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 999999988 5554 467777764 211 1122345667888999999999999999999999999999999999
Q ss_pred eeee-ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc
Q 007489 359 LHTF-TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 359 ~~~~-~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~ 409 (601)
+.++ .+ |...|++++|||||++||+|+.|++|+||++...
T Consensus 304 ~~~~~~g-----------H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 SKIFKQA-----------HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTS-----------SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEecCc-----------ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8876 56 9999999999999999999999999999998643
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-32 Score=264.40 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=214.0
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCcc----chhhhccccccceEEEEEeC--CCCEEEEEeeCCeEEEEE
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG----TLLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~ 106 (601)
.+|...|++++|+|++ +|++|+.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++|+.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 3899999999999999 9999999999999999876 45667789999999999999 699999999999999999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc--ccccccCCCCccccccccccccCCCCE
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPM 184 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (601)
+..+... .....|.....+..|...|.+++|+ |+ +. +
T Consensus 88 ~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~------------------------~ 126 (351)
T 3f3f_A 88 EDPDQEE--------CSGRRWNKLCTLNDSKGSLYSVKFA---------PAHLGL------------------------K 126 (351)
T ss_dssp ECTTSCT--------TSSCSEEEEEEECCCSSCEEEEEEC---------CGGGCS------------------------E
T ss_pred cCCCccc--------ccccCcceeeeecccCCceeEEEEc---------CCCCCc------------------------E
Confidence 9886531 1123455567778899999999998 77 65 9
Q ss_pred EEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCc
Q 007489 185 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 264 (601)
Q Consensus 185 l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 264 (601)
|++++.|+.|++||+.+......... ...+..+.+.
T Consensus 127 l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~------------------------------------ 162 (351)
T 3f3f_A 127 LACLGNDGILRLYDALEPSDLRSWTL--------TSEMKVLSIP------------------------------------ 162 (351)
T ss_dssp EEEEETTCEEEEEECSSTTCTTCCEE--------EEEEESCSCC------------------------------------
T ss_pred EEEecCCCcEEEecCCChHHhccccc--------cccccccccc------------------------------------
Confidence 99999999999999987543322110 0000000000
Q ss_pred ceEEEEEecCCCCeEEEEEcCC---CCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCC----
Q 007489 265 SLLVQVKSKASRKIICSTISNS---GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS---- 336 (601)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~s~~---g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~---- 336 (601)
...+...+.+++|+|+ +.++++ +.++.+.+|+... +.. .....+.+|...|++++|+|++
T Consensus 163 ------~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~---~~~---~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 163 ------PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD---GKL---HVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp ------CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT---SCE---EEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred ------cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC---Cce---eeeeecCCCCcceeEEEECCCCCCcc
Confidence 0123467999999997 888888 5666665554442 221 1124567888999999999998
Q ss_pred CeEEEEecCCcEEEEEcCCC----------------------------------------------ceeeeeccCccccc
Q 007489 337 SQLIIAGHDRRIYVVDVSSS----------------------------------------------ELLHTFTPCREEHD 370 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~~~----------------------------------------------~~~~~~~~~~~~~~ 370 (601)
++|++++.||.|++||+..+ +.+..+.+
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 304 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD------ 304 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT------
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec------
Confidence 89999999999999999764 33444444
Q ss_pred ccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec
Q 007489 371 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 417 (601)
|...|++++|+|++++|++++.||.|+||++.+++....+..
T Consensus 305 -----h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 305 -----HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp -----TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred -----ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence 889999999999999999999999999999998766555443
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.2e-33 Score=277.49 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=216.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|++|+.||+|++||+.+++.+..+. +|...|.+++| ++ .|++|+.||.|++||+.+++.+..+.+|..
T Consensus 145 ~l~~g~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~ 214 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE 214 (435)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS
T ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEc--------CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC
Confidence 47999999999999999999999998 89999999999 66 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 80 DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
.|.+++|+ +.++++|+.||.|++||+.++.. ......+.+|...|.++++. +
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~-----------~- 266 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD--------------ITLRRVLVGHRAAVNVVDFD-----------D- 266 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSC--------------CEEEEEECCCSSCEEEEEEE-----------T-
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC--------------ceeeeEecCCCCcEEEEEeC-----------C-
Confidence 99999997 46999999999999999988653 11124567899999999863 3
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
..+++|+.|+.|++||+.+..
T Consensus 267 -----------------------~~l~s~~~dg~i~vwd~~~~~------------------------------------ 287 (435)
T 1p22_A 267 -----------------------KYIVSASGDRTIKVWNTSTCE------------------------------------ 287 (435)
T ss_dssp -----------------------TEEEEEETTSEEEEEETTTCC------------------------------------
T ss_pred -----------------------CEEEEEeCCCeEEEEECCcCc------------------------------------
Confidence 399999999999999987521
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+.. ...|...+.++++ ++.++++ +.|+.|++||+.. +..+ .
T Consensus 288 --------------------------~~~~-~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~---~~~~-----~ 330 (435)
T 1p22_A 288 --------------------------FVRT-LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---GACL-----R 330 (435)
T ss_dssp --------------------------EEEE-EECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT---CCEE-----E
T ss_pred --------------------------EEEE-EcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC---CCEE-----E
Confidence 1111 1234577888888 4677777 7899999999986 4443 4
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc---------eeeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE---------LLHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
.+.+|...|.+++| ++.+|++|+.||.|++||+.+++ .+..+.. |...|++++| ++
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~--~~ 395 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-----------HSGRVFRLQF--DE 395 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-----------CSSCCCCEEE--CS
T ss_pred EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-----------CCCCeEEEEe--CC
Confidence 45678889999998 78899999999999999997665 6777776 8999999999 88
Q ss_pred CEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 390 QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 390 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
++|++++.||.|++||+.+.......+ ...+..++.|.+
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~ 434 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEP--PRSPSRTYTYIS 434 (435)
T ss_dssp SCEEECCSSSEEEEEC-------------------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCC--CCCCccceeeec
Confidence 899999999999999998876543322 123455555543
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-33 Score=278.99 Aligned_cols=274 Identities=12% Similarity=0.135 Sum_probs=218.4
Q ss_pred EEeeecCCcEEEEECCCCc----eEEEEEeccCCCCCCCceEEEEEEEee-CC-eEEEEcCCCcEEEeeCCcc-------
Q 007489 2 LYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHG------- 68 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~V~~v~~s~-~g-~l~s~~~dg~i~vwd~~~~------- 68 (601)
+++|+.||.|+||++.+.. .+..+. +|...|++++|+| ++ .|++|+.||.|+|||+.++
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~--------~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~ 121 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVC--------GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBC--------CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEe--------cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC
Confidence 4568999999999986542 222333 8999999999999 77 9999999999999999987
Q ss_pred chhhhccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc--cccccceeEEEe
Q 007489 69 TLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV--RAHTHDVRALTV 145 (601)
Q Consensus 69 ~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~ 145 (601)
+.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++. ...+ ..|...|.+++|
T Consensus 122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-----------------VLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-----------------EEEECTTTCCSCEEEEEE
T ss_pred CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----------------cEEEecCCCCCceEEEEE
Confidence 5677888999999999999998 6999999999999999998764 5556 789999999999
Q ss_pred eccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecc
Q 007489 146 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 225 (601)
Q Consensus 146 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (601)
+ |+++ .|++++.|+.|++||+++..
T Consensus 185 ~---------~~~~------------------------~l~~~~~d~~i~iwd~~~~~---------------------- 209 (402)
T 2aq5_A 185 S---------RDGA------------------------LICTSCRDKRVRVIEPRKGT---------------------- 209 (402)
T ss_dssp C---------TTSS------------------------CEEEEETTSEEEEEETTTTE----------------------
T ss_pred C---------CCCC------------------------EEEEEecCCcEEEEeCCCCc----------------------
Confidence 8 8886 99999999999999987521
Q ss_pred ccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCC-CeEEEEEcCCCCEEEEE----cCCccEE
Q 007489 226 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR-KIICSTISNSGMLFAYS----DHVKPSL 300 (601)
Q Consensus 226 ~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~----~~~~v~l 300 (601)
.+..+...+.. .+.+++|+|++++|+++ .++.|++
T Consensus 210 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 210 ----------------------------------------VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp ----------------------------------------EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred ----------------------------------------eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 11122122333 48899999999999986 7899999
Q ss_pred EEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEE-EecCCcEEEEEcCCCce-eeeeccCcccccccCCCCCC
Q 007489 301 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII-AGHDRRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEP 378 (601)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~-~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 378 (601)
|++......... ....+...+.+++|+|++++|++ ++.||.|++||+.+++. +..+..+. |..
T Consensus 250 wd~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---------~~~ 314 (402)
T 2aq5_A 250 WDTKHLEEPLSL------QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---------SKE 314 (402)
T ss_dssp EETTBCSSCSEE------EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---------CSS
T ss_pred EcCccccCCceE------EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---------cCC
Confidence 999862211111 11234567899999999999975 45799999999988874 55555422 568
Q ss_pred CeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE
Q 007489 379 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 379 ~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~ 412 (601)
.|.+++|+|++.++++ .++.+++|++.+++..
T Consensus 315 ~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred cccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 8999999999998875 5668999999887643
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.3e-33 Score=273.34 Aligned_cols=291 Identities=14% Similarity=0.118 Sum_probs=224.6
Q ss_pred EEEEEEeeCC--eEEEEcCCCcEEEeeCCcc----chhhhccccccceEEEEEeC-CCCEEEEEeeCCeEEEEEeccCcC
Q 007489 40 IWSLLSLRCG--TLVSADSTGSVQFWDSRHG----TLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 40 V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
...++++|+. .+++++.||.|+|||+... ..+..+.+|.+.|++++|+| ++++|++|+.||.|++|++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3457888888 4456889999999999653 24556789999999999999 999999999999999999988742
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
... .......+.+|...|.+++|+ |+++ .+|++++.|+
T Consensus 117 ~~~----------~~~~~~~~~~h~~~v~~~~~~---------p~~~-----------------------~~l~s~~~dg 154 (402)
T 2aq5_A 117 VLP----------LREPVITLEGHTKRVGIVAWH---------PTAQ-----------------------NVLLSAGCDN 154 (402)
T ss_dssp SSC----------BCSCSEEEECCSSCEEEEEEC---------SSBT-----------------------TEEEEEETTS
T ss_pred ccc----------cCCceEEecCCCCeEEEEEEC---------cCCC-----------------------CEEEEEcCCC
Confidence 100 001145677899999999998 8873 3999999999
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE-
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK- 271 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (601)
.|++||+.+.. .+..+.
T Consensus 155 ~i~iwd~~~~~--------------------------------------------------------------~~~~~~~ 172 (402)
T 2aq5_A 155 VILVWDVGTGA--------------------------------------------------------------AVLTLGP 172 (402)
T ss_dssp CEEEEETTTTE--------------------------------------------------------------EEEEECT
T ss_pred EEEEEECCCCC--------------------------------------------------------------ccEEEec
Confidence 99999987521 111221
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecC-CcCccc-eeEEEEccCCCeEEEE---ecC
Q 007489 272 SKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQL-PRKLQF-AHSMIFSYDSSQLIIA---GHD 345 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~i~~s~d~~~l~~~---~~d 345 (601)
..|...|.+++|+|++++|++ +.|+.|++||++. +..+ ..+ ..|... +.+++|+|++++|++| +.|
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK---GTVV-----AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT---TEEE-----EEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC---Ccee-----eeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 235678999999999999888 6899999999985 4333 222 344444 8999999999999999 789
Q ss_pred CcEEEEEcCCCce-eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE-EecCCeEEEEEcCCceE-EEEeecc-CCC
Q 007489 346 RRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA-VNCFGDVYIFNLEIQRQ-HWFISRL-EGA 421 (601)
Q Consensus 346 g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las-~~~dg~i~iwd~~~~~~-~~~~~~~-~~~ 421 (601)
+.|++||+.+++. +...... +...+.+++|+|++++|++ ++.||.|++||+.+++. ...+..+ +..
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~ 314 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELD----------TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE 314 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECC----------CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSS
T ss_pred ceEEEEcCccccCCceEEecc----------CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCC
Confidence 9999999987654 3333211 6778999999999999975 55799999999998873 3334332 347
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.|.+++|+| ++.++++ .++.+++|++.++++
T Consensus 315 ~v~~~~~sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 315 SQRGMGYMP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CCSEEEECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred cccceEEec-cccccee--cceeEEEEEcCCCcE
Confidence 899999999 8887764 567999999988754
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-32 Score=261.99 Aligned_cols=248 Identities=20% Similarity=0.221 Sum_probs=191.3
Q ss_pred CEEeeecCCcEEEEECCCCc--eEEEEEeccCCCCCCCceEEEEEEEee--CC-eEEEEcCCCcEEEeeCCccc--hhhh
Q 007489 1 MLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLR--CG-TLVSADSTGSVQFWDSRHGT--LLQA 73 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~--~g-~l~s~~~dg~i~vwd~~~~~--~~~~ 73 (601)
+||+|+.|++|+|||+.++. .+..+. +|...|++++|++ ++ .|++|+.|++|++||+.+++ .+..
T Consensus 27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~--------gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNGGQILIADLR--------GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCcEEEEEEc--------CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 48999999999999998875 456677 8999999999986 36 89999999999999999874 4566
Q ss_pred ccccccceEEEEEeCC--CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 74 HSFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
+.+|...|.+++|+|+ +.+|++|+.|++|++|++..+.. |.....+.+|...|.+++|+
T Consensus 99 ~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--------------~~~~~~~~~h~~~v~~~~~~----- 159 (316)
T 3bg1_A 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--------------WEVKKINNAHTIGCNAVSWA----- 159 (316)
T ss_dssp ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--------------EEECCBTTSSSSCBCCCEEC-----
T ss_pred ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--------------cceeeeeccccCCcceEEEc-----
Confidence 7889999999999997 78999999999999999987531 33345667899999999987
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
|+... ..++ +...
T Consensus 160 ----~~~~~----------------------~~~~-----------~~~~------------------------------ 172 (316)
T 3bg1_A 160 ----PAVVP----------------------GSLI-----------DHPS------------------------------ 172 (316)
T ss_dssp ----CCCCC---------------------------------------CC------------------------------
T ss_pred ----cccCC----------------------cccc-----------cccc------------------------------
Confidence 54310 0000 0000
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCc
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~ 310 (601)
. ...+++++|++ +.|+.|++|++.. ..
T Consensus 173 --------------------------------------------~-----~~~~~~~~l~sgs~D~~v~lWd~~~---~~ 200 (316)
T 3bg1_A 173 --------------------------------------------G-----QKPNYIKRFASGGCDNLIKLWKEEE---DG 200 (316)
T ss_dssp --------------------------------------------S-----CCCCCCCBEECCBTTSBCCEEEECT---TS
T ss_pred --------------------------------------------c-----cCccccceEEEecCCCeEEEEEeCC---CC
Confidence 0 00123456666 6788889998863 11
Q ss_pred ceEEEeeecCCcCccceeEEEEccCC----CeEEEEecCCcEEEEEcCCCc----eeeeeccCcccccccCCCCCCCeeE
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSYDS----SQLIIAGHDRRIYVVDVSSSE----LLHTFTPCREEHDREIQPSEPPITK 382 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~d~----~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~ 382 (601)
. |.. ...+.+|...|.+++|+|++ ++|++++.|++|++|++.+.. ....+.. |...|.+
T Consensus 201 ~-~~~-~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-----------~~~~v~~ 267 (316)
T 3bg1_A 201 Q-WKE-EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK-----------FNDVVWH 267 (316)
T ss_dssp C-EEE-EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE-----------CSSCEEE
T ss_pred c-cce-eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc-----------CCCcEEE
Confidence 1 111 24567888999999999986 789999999999999987631 1233444 7889999
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcC
Q 007489 383 MFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 383 l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
++|+|++++||+++.||.|+||+..
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999999999999999975
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=266.55 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=207.5
Q ss_pred cchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeec
Q 007489 68 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 147 (601)
Q Consensus 68 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 147 (601)
|+++..+.+|.+.|++++|+|++++|++|+.||.|++|++.... +.....+..|...|.+++|+
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~~~~~- 64 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWA- 64 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEEC-
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------ceeeeEecCCCCcEEEEEeC-
Confidence 45678889999999999999999999999999999999998432 22356778899999999997
Q ss_pred cccCCCCCCc--ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecc
Q 007489 148 PISREDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 225 (601)
Q Consensus 148 ~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (601)
++ +. +|++++.|+.|++||+.+...
T Consensus 65 --------~~~~~~------------------------~l~s~~~dg~v~iwd~~~~~~--------------------- 91 (379)
T 3jrp_A 65 --------HPKFGT------------------------ILASCSYDGKVLIWKEENGRW--------------------- 91 (379)
T ss_dssp --------CGGGCS------------------------EEEEEETTSCEEEEEEETTEE---------------------
T ss_pred --------CCCCCC------------------------EEEEeccCCEEEEEEcCCCce---------------------
Confidence 55 44 999999999999999875210
Q ss_pred ccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEE
Q 007489 226 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFE 302 (601)
Q Consensus 226 ~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~ 302 (601)
........+...|.+++|+|+ +.++++ +.++.|++|+
T Consensus 92 ----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 92 ----------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp ----------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred ----------------------------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 011222335678999999999 888888 7999999999
Q ss_pred eecCCCCcceEEEeeecCCcCccceeEEEEcc-------------CCCeEEEEecCCcEEEEEcCCCc----eeeeeccC
Q 007489 303 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-------------DSSQLIIAGHDRRIYVVDVSSSE----LLHTFTPC 365 (601)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-------------d~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~ 365 (601)
+..... ... ..+..|...|.+++|+| ++.+|++++.||.|++||+.+++ ....+..
T Consensus 132 ~~~~~~-~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 204 (379)
T 3jrp_A 132 FKENGT-TSP-----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG- 204 (379)
T ss_dssp CCTTSC-CCE-----EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-
T ss_pred cCCCCc-eee-----EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-
Confidence 986211 111 23456778999999999 69999999999999999997664 4455665
Q ss_pred cccccccCCCCCCCeeEEEEccC---CCEEEEEecCCeEEEEEcCCceE--EEEeecc--CCCceeEEEecCCCCCEEEE
Q 007489 366 REEHDREIQPSEPPITKMFTSSD---GQWLAAVNCFGDVYIFNLEIQRQ--HWFISRL--EGASVTAAGFPPQNNNVLII 438 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~spd---~~~las~~~dg~i~iwd~~~~~~--~~~~~~~--~~~~v~~l~~~p~~~~~l~~ 438 (601)
|...|.+++|+|+ +++|++++.||.|+|||+.++.. ...+... +...|++++|+| ++++|++
T Consensus 205 ----------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~ 273 (379)
T 3jrp_A 205 ----------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLAL 273 (379)
T ss_dssp ----------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEE
T ss_pred ----------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEE
Confidence 8999999999999 89999999999999999988631 1122222 557899999999 9999999
Q ss_pred EeCCCeEEEEEcCCC
Q 007489 439 TTSSNQVYVFDVEAK 453 (601)
Q Consensus 439 ~~~dg~v~vwd~~~~ 453 (601)
++.||.|++|++...
T Consensus 274 ~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 274 SGGDNKVTLWKENLE 288 (379)
T ss_dssp EESSSSEEEEEEEET
T ss_pred ecCCCcEEEEeCCCC
Confidence 999999999999854
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.7e-31 Score=267.40 Aligned_cols=302 Identities=12% Similarity=0.069 Sum_probs=236.6
Q ss_pred eeecCCcEEEEECC--CC--ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh-----h
Q 007489 4 SGSSDGYIRSWDAK--LG--YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-----A 73 (601)
Q Consensus 4 tg~~dg~i~iwd~~--~~--~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~-----~ 73 (601)
+++.|+.++||.+. ++ +.+..+. .+ ..+.+++|+|++ .+++++.++.|++||+.+++.+. .
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~--------~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 164 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFK--------TG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK 164 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEE--------CS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH
T ss_pred cccCCCceEEEEECCCCCcceEEEEEc--------CC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc
Confidence 45666755666553 35 5555665 23 345689999977 67788889999999999988776 5
Q ss_pred ccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCC
Q 007489 74 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 153 (601)
Q Consensus 74 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 153 (601)
+.+|...|.+++|+++++++++++.|+.|++||+.+++. ...+..|...+.+++|+
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-----------------~~~~~~~~~~~~~~~~~------- 220 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY-----------------KATVDLTGKWSKILLYD------- 220 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------EEEEECSSSSEEEEEEE-------
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------EEEEcCCCCCeeEEEEc-------
Confidence 668999999999999999999999999999999988764 55666788899999998
Q ss_pred CCCcccccccCCCCccccccccccccCCCCEE-EEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 154 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPML-ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+++ .+ ++++.|+.|++||+.+...
T Consensus 221 --~~~~------------------------~l~~~~~~~~~i~~~d~~~~~~---------------------------- 246 (433)
T 3bws_A 221 --PIRD------------------------LVYCSNWISEDISVIDRKTKLE---------------------------- 246 (433)
T ss_dssp --TTTT------------------------EEEEEETTTTEEEEEETTTTEE----------------------------
T ss_pred --CCCC------------------------EEEEEecCCCcEEEEECCCCcE----------------------------
Confidence 8876 55 5666899999999875210
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc---------CCccEEEEe
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD---------HVKPSLFEL 303 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---------~~~v~l~~~ 303 (601)
+..+ .....+.+++++|+|++++++. ++.|++|++
T Consensus 247 ----------------------------------~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 247 ----------------------------------IRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp ----------------------------------EEEC--CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred ----------------------------------EEEe--cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 0000 1124488999999999888742 778999999
Q ss_pred ecCCCCcceEEEeeecCCcCccceeEEEEccCCCeE-EEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeE
Q 007489 304 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL-IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 382 (601)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 382 (601)
.. +..+.. ..+...+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+
T Consensus 291 ~~---~~~~~~------~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------~~~~~~~ 349 (433)
T 3bws_A 291 DK---EKLIDT------IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP------------VFDKPNT 349 (433)
T ss_dssp TT---TEEEEE------EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE------------CSSSEEE
T ss_pred CC---CcEEee------ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec------------CCCCCCe
Confidence 75 333211 1233467899999999765 556889999999999888887775 5677999
Q ss_pred EEEccCCCEEEEEec---------------CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeC-CCeEE
Q 007489 383 MFTSSDGQWLAAVNC---------------FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS-SNQVY 446 (601)
Q Consensus 383 l~~spd~~~las~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~-dg~v~ 446 (601)
++|+|++++|++++. ||.|++||+.+++....+.. ...+.+++|+| ++++|++++. |+.|+
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~-dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSP-DNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECT-TSCEEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcC-CCCEEEEEECCCCeEE
Confidence 999999999988876 57999999999998777764 35799999999 9999998875 99999
Q ss_pred EEEcCC
Q 007489 447 VFDVEA 452 (601)
Q Consensus 447 vwd~~~ 452 (601)
+|+++.
T Consensus 427 v~~~~~ 432 (433)
T 3bws_A 427 VYRRDG 432 (433)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 999864
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.4e-32 Score=260.87 Aligned_cols=298 Identities=12% Similarity=0.093 Sum_probs=206.4
Q ss_pred EEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCC
Q 007489 13 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 91 (601)
Q Consensus 13 iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~ 91 (601)
||++.+.+.+..+. .|...|++++|+||| .|++|+.++ ++|||+.+++.+.... ...+..+++.++++
T Consensus 3 i~s~~~~~~~~~~~--------~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 3 LGSMITRNPIVPEN--------HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTN 71 (355)
T ss_dssp ------------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSS
T ss_pred cccccccCCccccc--------cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCC
Confidence 56667777776666 899999999999999 788887765 7899998877654433 23578889999888
Q ss_pred EE-EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccc
Q 007489 92 RV-FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 170 (601)
Q Consensus 92 ~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 170 (601)
.+ ++++.|++|++||..+++. ...+. |...|.+++++ ++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~-----------------~~~~~-~~~~v~~v~~~---------~~------------- 111 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQD-----------------VSRIK-VDAPVKDLFLS---------RE------------- 111 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEE-----------------EEEEE-CSSCEEEEEEC---------SS-------------
T ss_pred EEEEEECCccEEEEEECCCCcE-----------------EEEEE-CCCceEEEEEc---------CC-------------
Confidence 87 4678889999999988764 33343 56789999986 44
Q ss_pred cccccccccCCCCEEEEecCCCeEEEEecccc-CCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecccc
Q 007489 171 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEF-TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLE 249 (601)
Q Consensus 171 ~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~ 249 (601)
.++.+ .|+.|++||+.+. +.+....
T Consensus 112 -------------~~~~~-~~~~i~i~d~~~~~~~~~~~~---------------------------------------- 137 (355)
T 3vu4_A 112 -------------FIVVS-YGDVISVFKFGNPWKRITDDI---------------------------------------- 137 (355)
T ss_dssp -------------EEEEE-ETTEEEEEESSTTCCBSSCCE----------------------------------------
T ss_pred -------------EEEEE-EcCEEEEEECCCCceeeEEec----------------------------------------
Confidence 23333 4788999998863 2111110
Q ss_pred CCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE---EcCCccEEEEeecCCCC----cc----eEEEeee
Q 007489 250 NNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY---SDHVKPSLFELKKGKVG----QG----EWIINKR 318 (601)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~---~~~~~v~l~~~~~~~~~----~~----~~~~~~~ 318 (601)
. ....+++++ .++++ +.++.|++||+...... .. .+.....
T Consensus 138 -------------------~-------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 138 -------------------R-------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp -------------------E-------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCE
T ss_pred -------------------c-------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence 0 112334445 45554 37889999998752100 00 0000024
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCc-EEEEEcCCCceeeeec-cCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRR-IYVVDVSSSELLHTFT-PCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~-i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
.+.+|...|.+++|+|++++|++|+.|++ |++||+.+++++.++. +. |...|.+++|+|++++|++++
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~----------h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL----------DRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT----------CCSCEEEEEECTTSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----------CCCcEEEEEECCCCCEEEEEE
Confidence 56789999999999999999999999998 9999999999999887 32 788999999999999999999
Q ss_pred cCCeEEEEEcCCceEE--EE--------------------eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 397 CFGDVYIFNLEIQRQH--WF--------------------ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~--~~--------------------~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
.|++|+|||+...... .. ++.........++|++ ++++|++++.||.+++|++..++
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999754311 01 1111112347799999 99999999999999999997654
No 106
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-31 Score=264.63 Aligned_cols=276 Identities=14% Similarity=0.112 Sum_probs=224.3
Q ss_pred EEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccc-cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCC
Q 007489 42 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 42 ~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
+++|++ +.+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 98 ~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------- 168 (401)
T 4aez_A 98 LLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-------- 168 (401)
T ss_dssp CEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------
T ss_pred EEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE--------
Confidence 355553 3788888999999999999988877765 899999999999999999999999999999988764
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
...+..|...|.+++|. + ..|++++.|+.|++||++
T Consensus 169 ---------~~~~~~~~~~v~~~~~~-----------~------------------------~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 169 ---------LRTMAGHQARVGCLSWN-----------R------------------------HVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp ---------EEEECCCSSCEEEEEEE-----------T------------------------TEEEEEETTSEEEEEETT
T ss_pred ---------EEEecCCCCceEEEEEC-----------C------------------------CEEEEEcCCCCEEEEecc
Confidence 56677899999999874 2 289999999999999876
Q ss_pred ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 007489 201 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 280 (601)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 280 (601)
...
T Consensus 205 ~~~----------------------------------------------------------------------------- 207 (401)
T 4aez_A 205 IAN----------------------------------------------------------------------------- 207 (401)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred cCc-----------------------------------------------------------------------------
Confidence 310
Q ss_pred EEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceee
Q 007489 281 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH 360 (601)
Q Consensus 281 ~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~ 360 (601)
..+ ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 208 -----------------------------~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 208 -----------------------------HQI-----GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp -----------------------------CEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred -----------------------------cee-----eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE
Confidence 000 1122456688999999999999999999999999999999888
Q ss_pred eeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEe--cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEE
Q 007489 361 TFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLI 437 (601)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 437 (601)
.+.. |...|.+++|+|++. ++++++ .|+.|++||+.+++....+. +...|.+++|+| ++++|+
T Consensus 254 ~~~~-----------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~-~~~~l~ 319 (401)
T 4aez_A 254 TKTN-----------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSP-HSKEIM 319 (401)
T ss_dssp EECC-----------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECS-SSSEEE
T ss_pred EecC-----------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECC-CCCeEE
Confidence 8887 889999999999765 566655 79999999999999877775 346899999999 999999
Q ss_pred EEe--CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc-CceEEEEeCCC
Q 007489 438 ITT--SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS-ARAMCVIDFGR 506 (601)
Q Consensus 438 ~~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~-~~~~~~~~~~~ 506 (601)
+++ .||.|++||+.+++... ...+.+|...|.+++|+|+ +..++..+ +..+.++++..
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~---------~~~~~~h~~~v~~~~~s~d--g~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTK---------QVDIPAHDTRVLYSALSPD--GRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEE---------EEEEECCSSCCCEEEECTT--SSEEEEECTTSEEEEEECCC
T ss_pred EEeecCCCcEEEEecCCcccee---------EEEecCCCCCEEEEEECCC--CCEEEEEeCCCcEEEEECCC
Confidence 954 89999999998865422 2245689999999999998 45555554 45677888754
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=267.38 Aligned_cols=269 Identities=12% Similarity=0.077 Sum_probs=210.0
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
....+|++|+|+||| ++||++.|++|+ |...+ +.+.+|...|.+++|+|+| .++.+.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 567889999999999 999999999999 64444 5558999999999999999 56666666654332
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
...+ .|...|.+++|+ |||+ .|++++.||.
T Consensus 79 ----------------~~~~-~~~~~V~~vawS---------PdG~------------------------~LAs~s~dg~ 108 (588)
T 2j04_A 79 ----------------LLNS-QPVCYPRVCKPS---------PIDD------------------------WMAVLSNNGN 108 (588)
T ss_dssp ----------------SSTT-SCSCCEEEEEEC---------SSSS------------------------CEEEEETTSC
T ss_pred ----------------Eeec-CCCCcEEEEEEC---------CCCC------------------------EEEEEeCCCc
Confidence 1122 458889999999 9997 9999999999
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|++|+... .+..+. .
T Consensus 109 V~iwd~~~----------------------------------------------------------------~l~~l~-~ 123 (588)
T 2j04_A 109 VSVFKDNK----------------------------------------------------------------MLTNLD-S 123 (588)
T ss_dssp EEEEETTE----------------------------------------------------------------EEEECC-C
T ss_pred EEEEeCCc----------------------------------------------------------------eeeecc-C
Confidence 99999542 001111 0
Q ss_pred C----CCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcc---eEEEeeecCCcCccceeEEEEccCCCeEEEEecC
Q 007489 274 A----SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQG---EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 274 ~----~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d 345 (601)
+ ...+.+++|||||++||+ +.||+|++|++........ ....-.....+|...|.+++|+||| +++++.|
T Consensus 124 ~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D 201 (588)
T 2j04_A 124 KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN 201 (588)
T ss_dssp SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT
T ss_pred CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC
Confidence 0 135899999999999999 6899999999986211000 1111112236688899999999999 8889999
Q ss_pred CcEEEEEcCCCce---eeeec-cCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCC
Q 007489 346 RRIYVVDVSSSEL---LHTFT-PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA 421 (601)
Q Consensus 346 g~i~vwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~ 421 (601)
+.|++||+..++. .+++. + |...|.+++|+ |++||+++ +++|++||+.+++...... .|..
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~-----------h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~ 266 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNA-----------SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLE 266 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECC-----------CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCS
T ss_pred CeEEEEECCCCccccceeeeccc-----------ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCc
Confidence 9999999987763 24563 4 78899999999 68999997 6999999999988743332 3678
Q ss_pred ceeEEEe--cCCCCCEEEEEeCCCeEEEEEcC
Q 007489 422 SVTAAGF--PPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 422 ~v~~l~~--~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
.|..++| +| ++..|++++.||+ ++|..+
T Consensus 267 ~V~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 9999999 99 9999999999999 999986
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.9e-31 Score=255.93 Aligned_cols=268 Identities=11% Similarity=0.047 Sum_probs=214.7
Q ss_pred CEEeeecCCcEEEEECCCCc---eEEEEEeccCCCCCCCceEEEEEEEeeCCe--EEEEcCCCcEEEeeC-Cccchhhhc
Q 007489 1 MLYSGSSDGYIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCGT--LVSADSTGSVQFWDS-RHGTLLQAH 74 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~--l~s~~~dg~i~vwd~-~~~~~~~~~ 74 (601)
+|++|+.||.|+|||+.+++ ....+. +|...|.+++|+|++. |++|+.||.|++||+ .+++. ..+
T Consensus 25 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~ 95 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSL--------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL 95 (342)
T ss_dssp EEEEEETTSEEEEEEEETTTTEEEEEEEE--------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC
T ss_pred EEEEEcCCCeEEEEEeCCCCccccceeee--------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec
Confidence 48999999999999999887 334444 6999999999999985 899999999999999 86654 677
Q ss_pred cc--cccceEEEEEeCCCCEEEEEeeCCeEEEEEecc---------CcCCCCCCCCCccccceeEEecCccccccceeEE
Q 007489 75 SF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASC---------ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL 143 (601)
Q Consensus 75 ~~--h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 143 (601)
.+ |...|.+++|+| +++|++++.|+.|++||+.+ ++. ...+. |...|.++
T Consensus 96 ~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 96 TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-----------------SNNTK-VKNKIFTM 156 (342)
T ss_dssp BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-----------------SSSSS-SCCCEEEE
T ss_pred cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe-----------------eeEEe-eCCceEEE
Confidence 88 999999999999 99999999999999999987 543 33444 88899999
Q ss_pred EeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc-cCCcCCCccCCCCCccceeee
Q 007489 144 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE-FTKFSPHEICPAPQRVPIHLV 222 (601)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 222 (601)
+|+ |+ .+++++.|+.|++||+.. ...
T Consensus 157 ~~~---------~~--------------------------~l~~~~~d~~i~i~d~~~~~~~------------------ 183 (342)
T 1yfq_A 157 DTN---------SS--------------------------RLIVGMNNSQVQWFRLPLCEDD------------------ 183 (342)
T ss_dssp EEC---------SS--------------------------EEEEEESTTEEEEEESSCCTTC------------------
T ss_pred Eec---------CC--------------------------cEEEEeCCCeEEEEECCccccc------------------
Confidence 986 33 588999999999999875 221
Q ss_pred eccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEE
Q 007489 223 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSL 300 (601)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l 300 (601)
........+...+.+++|+| +++++++ +.++.+++
T Consensus 184 -------------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 220 (342)
T 1yfq_A 184 -------------------------------------------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp -------------------------------------------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred -------------------------------------------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE
Confidence 01112223457799999999 9999998 68999999
Q ss_pred EEeecCCC---CcceEEEeeecC----CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccC
Q 007489 301 FELKKGKV---GQGEWIINKRQL----PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREI 373 (601)
Q Consensus 301 ~~~~~~~~---~~~~~~~~~~~~----~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 373 (601)
|+++.... ......+..... ..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------- 291 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--------- 291 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---------
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc---------
Confidence 99986300 133222221110 12344899999999999999999999999999999999999887
Q ss_pred CCC-CCCeeEEEEccCCCEEEEEecCCe-EEEEE
Q 007489 374 QPS-EPPITKMFTSSDGQWLAAVNCFGD-VYIFN 405 (601)
Q Consensus 374 ~~~-~~~i~~l~~spd~~~las~~~dg~-i~iwd 405 (601)
| ...|.+++ |++++|++++.||. .+.|.
T Consensus 292 --~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 --FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred --ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 6 89999999 99999999999998 44444
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.5e-30 Score=255.19 Aligned_cols=306 Identities=11% Similarity=0.138 Sum_probs=232.9
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
++++++.|+.|++||+.+++++..+. .|.. +.+++|+|+| .| ++++.|+.|++||+.+++.+..+..|.
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~--------~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIP--------VGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE--------CSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEee--------cCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 47899999999999999999999887 5544 8999999999 55 678899999999999999988887655
Q ss_pred cceEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc
Q 007489 79 GDVNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 157 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d 157 (601)
.+.+++|+|++++|+ +++.|+.|++||+.+++. ...+. +...+.+++|+ |+
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-----------------~~~~~-~~~~~~~~~~s---------~d 126 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-----------------AGTVK-TGKSPLGLALS---------PD 126 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----------------EEEEE-CSSSEEEEEEC---------TT
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-----------------EEEEe-CCCCcceEEEC---------CC
Confidence 899999999999886 455679999999998763 33333 34568899998 88
Q ss_pred ccccccCCCCccccccccccccCCCCEE-EEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 158 DKVKRSRGREKPIDFSYHKWAHLGVPML-ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++ .+ ++++.|+.|++||+.+.+
T Consensus 127 g~------------------------~l~~~~~~~~~v~~~d~~~~~--------------------------------- 149 (391)
T 1l0q_A 127 GK------------------------KLYVTNNGDKTVSVINTVTKA--------------------------------- 149 (391)
T ss_dssp SS------------------------EEEEEETTTTEEEEEETTTTE---------------------------------
T ss_pred CC------------------------EEEEEeCCCCEEEEEECCCCc---------------------------------
Confidence 76 55 788889999999987521
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE-E-EcCCccEEEEeecCCCCcceEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA-Y-SDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~-~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.+..+. ....+.+++|+|+++.++ + +.++.|++||+.. +.....
T Consensus 150 -----------------------------~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~ 195 (391)
T 1l0q_A 150 -----------------------------VINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDT 195 (391)
T ss_dssp -----------------------------EEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEE
T ss_pred -----------------------------EEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CeEEEE
Confidence 111111 125578999999998875 4 4678999999975 333211
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEe---cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAG---HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 391 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~ 391 (601)
+ .+...+.+++|+|++++|++++ .++.|++||+.+++.+..+.. + ..+.+++|+|++++
T Consensus 196 ~------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~-~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 196 V------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-----------G-PDPAGIAVTPDGKK 257 (391)
T ss_dssp E------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-----------C-SSEEEEEECTTSSE
T ss_pred E------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-----------C-CCccEEEEccCCCE
Confidence 1 1345788999999999999888 689999999999988888875 3 35789999999998
Q ss_pred E-EEEecCCeEEEEEcCCceEEEEeeccCCCce---eEEE------------ecCCCC----------CEEEEEeCCCeE
Q 007489 392 L-AAVNCFGDVYIFNLEIQRQHWFISRLEGASV---TAAG------------FPPQNN----------NVLIITTSSNQV 445 (601)
Q Consensus 392 l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~l~------------~~p~~~----------~~l~~~~~dg~v 445 (601)
| ++++.|+.|++||+.+++....+..... +. ..+. |+. +. -.+...+.|..+
T Consensus 258 l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~fs~-~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTATNTITATMAVGKN-PYASGQFIGSIPVQPVYPSADFKS-NITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EECCSSCEEECSSCCCCCBCCEEE-SCCSSEEETTCCEEEEECCBSCSE
T ss_pred EEEEcCCCCEEEEEECCCCcEEEEEECCcC-CCccceeeeccccccccccccccc-ccccccccccceEEEEeCCCCceE
Confidence 8 5678899999999999988777654321 11 0122 222 11 234445568889
Q ss_pred EEEEcCCCC
Q 007489 446 YVFDVEAKQ 454 (601)
Q Consensus 446 ~vwd~~~~~ 454 (601)
++|++..+.
T Consensus 336 ~~W~~~~g~ 344 (391)
T 1l0q_A 336 WKWDFGDGS 344 (391)
T ss_dssp EEEECSSSC
T ss_pred EEEECCCCc
Confidence 999998775
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-31 Score=263.38 Aligned_cols=295 Identities=13% Similarity=0.115 Sum_probs=221.6
Q ss_pred ceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccc---hhhhcc--------------------------------------
Q 007489 37 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT---LLQAHS-------------------------------------- 75 (601)
Q Consensus 37 ~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~---~~~~~~-------------------------------------- 75 (601)
..++.+++|+|+|.+++++.++.|++||+.+|+ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 346889999999955555568899999999888 554444
Q ss_pred ----------------ccccceEEEEEeCCCCEE-EEEeeCCeEEEEEec--cCcCCCCCCCCCccccceeEEecCcc--
Q 007489 76 ----------------FHKGDVNALAAAPSHNRV-FSTGSDGQVILYKAS--CESIGPNDGLSSSEVIKKWIYVGSVR-- 134 (601)
Q Consensus 76 ----------------~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-- 134 (601)
+|.+.|.+++|+|++++| ++++.||.|++|++. ++.. ...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------------~~~~~~~ 146 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----------------LKLRKRF 146 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------------EEEEEEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----------------eeeeecc
Confidence 234479999999999996 899999999999998 6553 34443
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP 214 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~ 214 (601)
.|...|.+++|+ |+++ .|++++.|+.+++|++..........
T Consensus 147 ~~~~~v~~~~~s---------p~~~------------------------~l~~~~~~g~v~~~~~~~~~~~~~~~----- 188 (450)
T 2vdu_B 147 CFSKRPNAISIA---------EDDT------------------------TVIIADKFGDVYSIDINSIPEEKFTQ----- 188 (450)
T ss_dssp ECSSCEEEEEEC---------TTSS------------------------EEEEEETTSEEEEEETTSCCCSSCCC-----
T ss_pred cCCCCceEEEEc---------CCCC------------------------EEEEEeCCCcEEEEecCCcccccccc-----
Confidence 567889999998 8887 99999999999999987633211000
Q ss_pred CccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC---CCEEE
Q 007489 215 QRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS---GMLFA 291 (601)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~ 291 (601)
.....|...|.+++|+|+ +++|+
T Consensus 189 ------------------------------------------------------~~~~~h~~~v~~~~~sp~~~~~~~l~ 214 (450)
T 2vdu_B 189 ------------------------------------------------------EPILGHVSMLTDVHLIKDSDGHQFII 214 (450)
T ss_dssp ------------------------------------------------------CCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred ------------------------------------------------------eeeecccCceEEEEEcCCCCCCcEEE
Confidence 001134578999999999 98888
Q ss_pred E-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccc-
Q 007489 292 Y-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH- 369 (601)
Q Consensus 292 ~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~- 369 (601)
+ +.|+.|++|++.. +..+ ...+.+|...|.+++|+ ++++|++++.|+.|++||+.+++++..+.......
T Consensus 215 s~~~d~~i~vwd~~~---~~~~----~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 215 TSDRDEHIKISHYPQ---CFIV----DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp EEETTSCEEEEEESC---TTCE----EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred EEcCCCcEEEEECCC---Ccee----eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence 8 6899999999985 3333 12256788899999999 99999999999999999999999888776321000
Q ss_pred -------------cccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEc--CCc---eEEEEeeccCCCceeEEEecC
Q 007489 370 -------------DREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQ---RQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 370 -------------~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~v~~l~~~p 430 (601)
..........|.+++|+|++++|++++ .++.|+||++ ..+ +....+.. + ..|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~-~~v~~~~~~~ 364 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-P-YNVISLSAHN 364 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-S-SCEEEEEEET
T ss_pred hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-C-CceEEEEecC
Confidence 000012456799999999999999998 8999999999 555 55555553 3 6899999999
Q ss_pred CCCCEEEEE-eC------CCeEEEEEcCC
Q 007489 431 QNNNVLIIT-TS------SNQVYVFDVEA 452 (601)
Q Consensus 431 ~~~~~l~~~-~~------dg~v~vwd~~~ 452 (601)
++ +++++ +. ++.|.+|.+..
T Consensus 365 -~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 -DE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp -TE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred -Cc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 65 44444 32 45578887653
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.8e-30 Score=251.86 Aligned_cols=269 Identities=13% Similarity=0.125 Sum_probs=210.8
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
..+.+|.+.|++++|+|++++|++|+.||.|++|++.++.. .+.....+..|...|.+++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~----- 66 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------NWELSDSWRAHDSSIVAIDWA----- 66 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------CEEEEEEEECCSSCEEEEEEC-----
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------cceecceeccCCCcEEEEEEc-----
Confidence 34678999999999999999999999999999999987642 233466778899999999998
Q ss_pred CCCCC--cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 152 EDPLP--EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 152 ~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
| +++ +|++++.|+.|++||+..........
T Consensus 67 ----~~~d~~------------------------~l~s~~~dg~v~vwd~~~~~~~~~~~-------------------- 98 (351)
T 3f3f_A 67 ----SPEYGR------------------------IIASASYDKTVKLWEEDPDQEECSGR-------------------- 98 (351)
T ss_dssp ----CGGGCS------------------------EEEEEETTSCEEEEEECTTSCTTSSC--------------------
T ss_pred ----CCCCCC------------------------EEEEEcCCCeEEEEecCCCccccccc--------------------
Confidence 6 455 99999999999999998633111000
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeecC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFELKKG 306 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~~ 306 (601)
.. ........+...|.+++|+|+ +.++++ +.++.|++||+...
T Consensus 99 ---------------------------------~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 99 ---------------------------------RW-NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp ---------------------------------SE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred ---------------------------------Cc-ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence 00 111222345688999999999 998888 78999999999863
Q ss_pred CCCcceEEEee------ecCCcCccceeEEEEccC---CCeEEEEecCCcEEEEEcCCCce--eeeeccCcccccccCCC
Q 007489 307 KVGQGEWIINK------RQLPRKLQFAHSMIFSYD---SSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQP 375 (601)
Q Consensus 307 ~~~~~~~~~~~------~~~~~~~~~v~~i~~s~d---~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~ 375 (601)
.. ...+.... .....+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 212 (351)
T 3f3f_A 145 SD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG----------- 212 (351)
T ss_dssp TC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-----------
T ss_pred HH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-----------
Confidence 22 12222111 112256678999999997 89999999999998888776664 556665
Q ss_pred CCCCeeEEEEccCC----CEEEEEecCCeEEEEEcCCc------------------------------------------
Q 007489 376 SEPPITKMFTSSDG----QWLAAVNCFGDVYIFNLEIQ------------------------------------------ 409 (601)
Q Consensus 376 ~~~~i~~l~~spd~----~~las~~~dg~i~iwd~~~~------------------------------------------ 409 (601)
|...|++++|+|++ ++|++++.||.|++||+..+
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 89999999999998 89999999999999999864
Q ss_pred ----eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 410 ----RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 410 ----~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
+....+. .|...|++++|+| ++++|++++.||.|++|++..++
T Consensus 293 ~~~~~~~~~~~-~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 293 NLQVELLSEHD-DHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SEEEEEEEEEC-TTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTS
T ss_pred cccccEEEEEe-cccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCc
Confidence 3333333 3557899999999 99999999999999999999875
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=262.87 Aligned_cols=272 Identities=16% Similarity=0.208 Sum_probs=205.8
Q ss_pred CEEeeecCCcEEEEECCC-CceE-EEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKL-GYEI-YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h 77 (601)
+|++|+.||.|+|||+.+ +..+ ..+. +|...|.+++|+|++ +|++++.||.|++||+.+++.+. +..|
T Consensus 56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~ 126 (368)
T 3mmy_A 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQ--------MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQH 126 (368)
T ss_dssp EEEEEETTSEEEEEEECTTSCEEEEEEE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEEC
T ss_pred EEEEECCCCcEEEEEcCCCCceeEEEec--------cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccc
Confidence 489999999999999987 6555 5666 799999999999999 99999999999999999888765 5679
Q ss_pred ccceEEEEE--eCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 78 KGDVNALAA--APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 78 ~~~V~~l~~--s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
...|.+++| ++++++|++++.|+.|++||+.+++. ...+..|. .+.++.+.
T Consensus 127 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------------~~~~~~~~-~~~~~~~~--------- 179 (368)
T 3mmy_A 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-----------------MMVLQLPE-RCYCADVI--------- 179 (368)
T ss_dssp SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----------------SEEEECSS-CEEEEEEE---------
T ss_pred cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----------------EEEEecCC-CceEEEec---------
Confidence 999999999 88999999999999999999998764 33344333 45555543
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
. +.+++++.++.+.+|++......
T Consensus 180 --~------------------------~~~~~~~~~~~i~~~~~~~~~~~------------------------------ 203 (368)
T 3mmy_A 180 --Y------------------------PMAVVATAERGLIVYQLENQPSE------------------------------ 203 (368)
T ss_dssp --T------------------------TEEEEEEGGGCEEEEECSSSCEE------------------------------
T ss_pred --C------------------------CeeEEEeCCCcEEEEEeccccch------------------------------
Confidence 1 27888889999999998752100
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE----EEE-EcCCccEEEEeecCCCCc
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML----FAY-SDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~----l~~-~~~~~v~l~~~~~~~~~~ 310 (601)
...........+.++++.++... +++ +.++.+++|++.......
T Consensus 204 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 204 -------------------------------FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp -------------------------------EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred -------------------------------hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 00011111233445555444332 555 799999999998621112
Q ss_pred ceEEEeee-------cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEE
Q 007489 311 GEWIINKR-------QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM 383 (601)
Q Consensus 311 ~~~~~~~~-------~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 383 (601)
.+..+... ....|...|.+++|+|++++|++++.||.|++||+.+++++..+.. |...|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~ 321 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-----------LDQPISAC 321 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-----------CSSCEEEE
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-----------CCCCceEE
Confidence 22211111 1122223799999999999999999999999999999999999887 89999999
Q ss_pred EEccCCCEEEEEecCCeEEEEEc
Q 007489 384 FTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 384 ~~spd~~~las~~~dg~i~iwd~ 406 (601)
+|+|++++|++++.|+..+.|++
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGG
T ss_pred EECCCCCeEEEEecccccccccc
Confidence 99999999999999875554443
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-32 Score=286.38 Aligned_cols=255 Identities=15% Similarity=0.185 Sum_probs=208.5
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC--ccchhhhccccccceEEEEEeCC--CCEEEEEeeCCeEEEEEecc
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASC 109 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vw~~~~ 109 (601)
+|.+.|++++|+|+| +|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999999999 99999999999999997 66778889999999999999988 99999999999999999988
Q ss_pred CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc--ccccccCCCCccccccccccccCCCCEEEE
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPMLIS 187 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 187 (601)
+. +.....+..|...|.+++|+ |+ +. .+++
T Consensus 87 ~~---------------~~~~~~~~~h~~~V~~v~~s---------p~~~~~------------------------~l~s 118 (753)
T 3jro_A 87 GR---------------WSQIAVHAVHSASVNSVQWA---------PHEYGP------------------------LLLV 118 (753)
T ss_dssp TE---------------EEEEEEECCCSSCEEEEEEC---------CGGGCS------------------------EEEE
T ss_pred Cc---------------ccccccccCCCCCeEEEEEC---------CCCCCC------------------------EEEE
Confidence 64 23356778899999999998 77 55 9999
Q ss_pred ecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 188 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 188 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
|+.||.|++||+........
T Consensus 119 gs~dg~I~vwdl~~~~~~~~------------------------------------------------------------ 138 (753)
T 3jro_A 119 ASSDGKVSVVEFKENGTTSP------------------------------------------------------------ 138 (753)
T ss_dssp EETTSEEEEEECCSSSCCCC------------------------------------------------------------
T ss_pred EeCCCcEEEEEeecCCCcce------------------------------------------------------------
Confidence 99999999999886321100
Q ss_pred EEEEecCCCCeEEEEEcC-------------CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc
Q 007489 268 VQVKSKASRKIICSTISN-------------SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 333 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~-------------~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 333 (601)
.....+...|.+++|+| ++.++++ +.|+.|++|++.. +...+.+. ..+.+|...|.+++|+
T Consensus 139 -~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~---~~~~~~~~-~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 139 -IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTYVLE-STLEGHSDWVRDVAWS 213 (753)
T ss_dssp -EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET---TTTEEEEE-EEECCCSSCEEEEEEC
T ss_pred -eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC---Ccccceee-eeecCCCCcEEEEEec
Confidence 11123457788999998 5788887 7899999999986 32222222 4567788999999999
Q ss_pred cC---CCeEEEEecCCcEEEEEcCCCcee--eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 334 YD---SSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 334 ~d---~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
|+ +++|++++.||.|++||+.+++.. ..+.. ...|...|++++|+|++++|++++.||.|++|++..
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK--------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS--------SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec--------cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99 899999999999999999876421 11111 112788999999999999999999999999999986
Q ss_pred ce
Q 007489 409 QR 410 (601)
Q Consensus 409 ~~ 410 (601)
..
T Consensus 286 ~~ 287 (753)
T 3jro_A 286 EG 287 (753)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=1e-29 Score=246.13 Aligned_cols=300 Identities=11% Similarity=0.071 Sum_probs=199.9
Q ss_pred EeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccccee
Q 007489 62 FWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR 141 (601)
Q Consensus 62 vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 141 (601)
||++.+.+++..+..|...|++++|+|||++|++|+.|+ +++|++.+... . ...+...+.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------~--~~~~~~~~~ 62 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------I--MSQEMRHLS 62 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------E--EEEECSCCC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------e--eeeecCCeE
Confidence 567777788888899999999999999999999998765 78999887542 1 112223466
Q ss_pred EEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceee
Q 007489 142 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 221 (601)
Q Consensus 142 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (601)
.+++. +++. ..+++++.|+.|++||..+.+
T Consensus 63 ~~~~~---------~~~~-----------------------~~~~~~~~d~~v~iWd~~~~~------------------ 92 (355)
T 3vu4_A 63 KVRML---------HRTN-----------------------YVAFVTGVKEVVHIWDDVKKQ------------------ 92 (355)
T ss_dssp EEEEC---------TTSS-----------------------EEEEECSSTTEEEEEETTTTE------------------
T ss_pred EEEEc---------CCCC-----------------------EEEEEECCccEEEEEECCCCc------------------
Confidence 67765 4443 244778888999999987521
Q ss_pred eeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEE
Q 007489 222 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLF 301 (601)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~ 301 (601)
.+..+. +...|.+++++++. ++++.++.+++|
T Consensus 93 --------------------------------------------~~~~~~--~~~~v~~v~~~~~~--~~~~~~~~i~i~ 124 (355)
T 3vu4_A 93 --------------------------------------------DVSRIK--VDAPVKDLFLSREF--IVVSYGDVISVF 124 (355)
T ss_dssp --------------------------------------------EEEEEE--CSSCEEEEEECSSE--EEEEETTEEEEE
T ss_pred --------------------------------------------EEEEEE--CCCceEEEEEcCCE--EEEEEcCEEEEE
Confidence 112222 34678999998764 555678899999
Q ss_pred EeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEE--EecCCcEEEEEcCCCc----------------eeeeec
Q 007489 302 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII--AGHDRRIYVVDVSSSE----------------LLHTFT 363 (601)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~--~~~dg~i~vwd~~~~~----------------~~~~~~ 363 (601)
++... ...+ ..+.. +...+++++ .++++ |+.+|.|++||+.+++ .+..+.
T Consensus 125 d~~~~--~~~~-----~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 125 KFGNP--WKRI-----TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192 (355)
T ss_dssp ESSTT--CCBS-----SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC
T ss_pred ECCCC--ceee-----EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence 99862 1222 11111 334556777 56766 5789999999998765 156666
Q ss_pred cCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe-EEEEEcCCceEEEEeec-cCCCceeEEEecCCCCCEEEEEeC
Q 007489 364 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD-VYIFNLEIQRQHWFISR-LEGASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~-i~iwd~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~~~~~ 441 (601)
+ |...|++++|+|+|++||+|+.||+ |+|||+.+++....+.. .|...|++++|+| ++++|++++.
T Consensus 193 ~-----------h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~ 260 (355)
T 3vu4_A 193 A-----------HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSD 260 (355)
T ss_dssp C-----------CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEET
T ss_pred c-----------cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEEC
Confidence 6 9999999999999999999999998 99999999999888873 3678999999999 9999999999
Q ss_pred CCeEEEEEcCCCCcccchhcccCCcCcc-----------cc-cCCCcEEEEEeCCCCCCCEEEEEcCce-EEEEeCC
Q 007489 442 SNQVYVFDVEAKQLGEWSMQHTFVLPRR-----------YQ-EFPGEVIGLSFSPSPSSSSVIIYSARA-MCVIDFG 505 (601)
Q Consensus 442 dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~v~~i~~~p~~~~~~~~~~~~~~-~~~~~~~ 505 (601)
|++|++||+.......+.......++.. +. ........++|+|+ ++.+++|..++ +..+++.
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d--~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE--SSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS--SEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC--CCEEEEEeCCCeEEEEEEE
Confidence 9999999998765333221111000100 00 11223466899998 77888885443 4455553
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-30 Score=249.30 Aligned_cols=265 Identities=10% Similarity=-0.017 Sum_probs=199.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCC---------ccchh
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR---------HGTLL 71 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~---------~~~~~ 71 (601)
+|++|+.||+|++||+.+++.+.++. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~----------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTIT----------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEE----------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEe----------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 48999999999999999999998886 345778888888 9999999999999765 44434
Q ss_pred hhcc-ccccceEEEEEeC--CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc-cccccceeEEEeec
Q 007489 72 QAHS-FHKGDVNALAAAP--SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRALTVAV 147 (601)
Q Consensus 72 ~~~~-~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~ 147 (601)
..+. +|.+.|.+++|+| ++++|++++.||+|++||+.++.. .... ..|...+.+++|+
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------------~~~~~~~~~~~i~~~~~~- 179 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----------------YIVHSAKSDVEYSSGVLH- 179 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----------------EEEECCCSSCCCCEEEEC-
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----------------EEEEecCCCCceEEEEEC-
Confidence 4443 5778999999999 999999999999999999998763 2222 2345579999998
Q ss_pred cccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecccc
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF 227 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (601)
|++. +|++|+.|+.|++||+++....
T Consensus 180 --------pdg~------------------------~lasg~~dg~i~iwd~~~~~~~---------------------- 205 (343)
T 3lrv_A 180 --------KDSL------------------------LLALYSPDGILDVYNLSSPDQA---------------------- 205 (343)
T ss_dssp --------TTSC------------------------EEEEECTTSCEEEEESSCTTSC----------------------
T ss_pred --------CCCC------------------------EEEEEcCCCEEEEEECCCCCCC----------------------
Confidence 8887 9999999999999999863211
Q ss_pred CCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCC
Q 007489 228 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGK 307 (601)
Q Consensus 228 ~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~ 307 (601)
...+...|...|.+++|+|+|.+|+++.++.|++||++...
T Consensus 206 ---------------------------------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 206 ---------------------------------------SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV 246 (343)
T ss_dssp ---------------------------------------CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST
T ss_pred ---------------------------------------ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC
Confidence 01112235688999999999999999667799999998622
Q ss_pred CCcceEEEeeecCCcCccce--eEEEEccCCCeEEEEec-CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEE
Q 007489 308 VGQGEWIINKRQLPRKLQFA--HSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF 384 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v--~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 384 (601)
....+ ..+..+...+ .+++|+|++++|++++. |+.|++|++......... .++..++
T Consensus 247 ~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---------------~~~~~~~ 306 (343)
T 3lrv_A 247 GTLAY-----PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---------------DEESALC 306 (343)
T ss_dssp TCBSS-----CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---------------EEEEECC
T ss_pred cceee-----cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---------------cCceeEe
Confidence 11111 1111122233 46999999999999998 999999998655432222 2467788
Q ss_pred Ecc---CCCEEEEEecCCeEEEEEcCC
Q 007489 385 TSS---DGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 385 ~sp---d~~~las~~~dg~i~iwd~~~ 408 (601)
|++ +.+.|++++.||.+.++-...
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCccccccceeEEEecCCceEEEEecC
Confidence 888 889999999999998875433
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.4e-30 Score=256.15 Aligned_cols=277 Identities=11% Similarity=0.033 Sum_probs=178.6
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccch-----hhhccccccceEEEEEeC--------CCCEEEEEeeCCe
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL-----LQAHSFHKGDVNALAAAP--------SHNRVFSTGSDGQ 101 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~-----~~~~~~h~~~V~~l~~s~--------~~~~l~s~~~dg~ 101 (601)
|...+....+++++ .|++++.|++|+|||..+++. +..+.+|.+.|++++|+| |+++|+||+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 33444445555666 799999999999999987753 456889999999999998 8899999999999
Q ss_pred EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCC
Q 007489 102 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 181 (601)
Q Consensus 102 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (601)
|++||+.++.. ...+..|...|.+++|+ |++.
T Consensus 168 v~~Wd~~~~~~-----------------~~~~~~~~~~v~~v~~~---------p~~~---------------------- 199 (393)
T 4gq1_A 168 LIIWRLTDEGP-----------------ILAGYPLSSPGISVQFR---------PSNP---------------------- 199 (393)
T ss_dssp EEEEEEETTEE-----------------EEEEEECSSCEEEEEEE---------TTEE----------------------
T ss_pred EEEEECCCCce-----------------eeeecCCCCCcEEEEEC---------CCCC----------------------
Confidence 99999987653 56677889999999999 8764
Q ss_pred CCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCC
Q 007489 182 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 261 (601)
Q Consensus 182 ~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~ 261 (601)
.+|++++.|+.|++||+.+.+......
T Consensus 200 -~~l~~~~~d~~v~~wd~~t~~~~~~~~---------------------------------------------------- 226 (393)
T 4gq1_A 200 -NQLIVGERNGNIRIFDWTLNLSAEENS---------------------------------------------------- 226 (393)
T ss_dssp -EEEEEEETTSEEEEEETTCCC----------------------------------------------------------
T ss_pred -ceEEecCCCCEEEEEECCCCccccccc----------------------------------------------------
Confidence 389999999999999998633211100
Q ss_pred CCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc-cCCCeEE
Q 007489 262 ASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-YDSSQLI 340 (601)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-~d~~~l~ 340 (601)
.....+...+......+.. . .....+|...+.++.|+ ||+++|+
T Consensus 227 -------~~~~~~~~~~~s~~~~~~~-----------------------~-----~~~~~~~~~~v~~v~~~~~dg~~l~ 271 (393)
T 4gq1_A 227 -------QTELVKNPWLLTLNTLPLV-----------------------N-----TCHSSGIASSLANVRWIGSDGSGIL 271 (393)
T ss_dssp -----------CSCCCSEEEESGGGC----------------------------------CCSSSCSEEEEETTTTCEEE
T ss_pred -------ccCCcccceEEecccccce-----------------------e-----eeecccccccceeeeeecCCCCEEE
Confidence 0000000111111111100 0 01223556678888886 7999999
Q ss_pred EEecCCcEEEEEcCCCceeeeeccCccccc--------ccCCCCCCCeeEEEEcc--CCCEEEEEecCCeEEEEEcCCce
Q 007489 341 IAGHDRRIYVVDVSSSELLHTFTPCREEHD--------REIQPSEPPITKMFTSS--DGQWLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 341 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~sp--d~~~las~~~dg~i~iwd~~~~~ 410 (601)
+++.|+++++||+..++....+..+..... .....+...+ ...|+| ++.++++|+.||.|+|||+.+++
T Consensus 272 s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 272 AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 999999999999988776655554211000 0001122222 233444 44467788899999999999988
Q ss_pred EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 411 QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 411 ~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
....+.. |..+|.+++|+| |+++||+++.+| +.+|.+..
T Consensus 351 ~~~~~~~-~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 351 SNSIPIQ-LGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp CCEEEEE-CSSCEEEEEECT-TSSEEEEEESSE-EEEEEEGG
T ss_pred EEEEecC-CCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEeC
Confidence 7655554 446999999999 999999998766 67776643
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.4e-29 Score=232.32 Aligned_cols=274 Identities=11% Similarity=0.086 Sum_probs=189.5
Q ss_pred EEeeecCCcEEEEECCCC---ceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccc
Q 007489 2 LYSGSSDGYIRSWDAKLG---YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h 77 (601)
|+++|++ .|++|++.++ +.+++++ +|+.+|..++|+||- -|+...- | .-|
T Consensus 57 ~~~~~~~-~v~lw~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~-----------~------~~~ 110 (356)
T 2w18_A 57 IITACED-VVSLWKALDAWQWEKLYTWH--------FAEVPVLQIVPVPDVYNLVCVAL-----------G------NLE 110 (356)
T ss_dssp EEEEESS-EEEEEEESSSSBEEEEEEEE--------CCSSCEEEECCCTTCCSCEEEEE-----------C------SSS
T ss_pred EEEeccc-eEEEcccCCCccceeeEEEe--------ccCceeEEEEEcCcccceeeeee-----------c------ccc
Confidence 5777876 9999999999 8999999 899999999999986 3432211 1 125
Q ss_pred ccceEEEEEeCC----CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecC-ccccccceeEEEeeccccCC
Q 007489 78 KGDVNALAAAPS----HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 78 ~~~V~~l~~s~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~ 152 (601)
...|.+++|+|| ++++++++.+ +.+|++.+++. +.. ..+|
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~l-----------------v~ss~~g~---------------- 155 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRL-----------------VSSSGTLS---------------- 155 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEE-----------------EEEESSST----------------
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcE-----------------EEecccCC----------------
Confidence 678999999999 9999998855 77888755431 111 2233
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
|+.|++|++.. +|+
T Consensus 156 --------------------------------------d~~V~~~~~s~----------------------------dG~ 169 (356)
T 2w18_A 156 --------------------------------------DQQVEVMTFAE----------------------------DGG 169 (356)
T ss_dssp --------------------------------------TCEEEEEEECT----------------------------TSC
T ss_pred --------------------------------------CCcEEEEEECC----------------------------CCc
Confidence 55555555422 111
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC---CCCEEEE-EcCCccEEEEeecCCC
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN---SGMLFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~-~~~~~v~l~~~~~~~~ 308 (601)
. +.. ...|...+..++|++ ++.+|++ +.|++|+|||+.+
T Consensus 170 ~---------------------------------~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--- 212 (356)
T 2w18_A 170 G---------------------------------KEN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--- 212 (356)
T ss_dssp E---------------------------------EEE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT---
T ss_pred e---------------------------------eee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC---
Confidence 1 001 112345667777888 7799999 7999999999986
Q ss_pred CcceEEEeeecCCcCccceeEEEEccCCCeE------------EEEecCCcEEEEEcCCCceeeeeccCcccccccCCCC
Q 007489 309 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQL------------IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 376 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l------------~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 376 (601)
++.+..+.. -..+...+.+++|+|+|.++ ++|+.|++|++||..+++.+..+.... ..+|
T Consensus 213 Gk~l~tL~g--~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~------p~Gh 284 (356)
T 2w18_A 213 GQLLKKMHI--DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL------PPGQ 284 (356)
T ss_dssp CCEEEEEEC--CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC------CTTC
T ss_pred CcEEEEEcC--CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec------cCCC
Confidence 555432221 11123467888999999886 567789999999999998876653100 0015
Q ss_pred CCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 377 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 377 ~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
...+.+..+ ++.++|+++.|++|+|||+.+++...++..++...+..++|+| |+++|++|+.|++|+|||+
T Consensus 285 ~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 285 AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 555544444 4889999999999999999999998888754433455689999 9999999999999999996
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=253.75 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=214.0
Q ss_pred EEeeecCCcEEEEECCCCc---eEEEEEeccC----------------------------------------------CC
Q 007489 2 LYSGSSDGYIRSWDAKLGY---EIYRITVGLG----------------------------------------------GL 32 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~----------------------------------------------~~ 32 (601)
+++++.++.|++||+.+|+ .+..+..... ..
T Consensus 18 ~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (450)
T 2vdu_B 18 LVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLG 97 (450)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------------------
T ss_pred EEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCccccCCCCC
Confidence 3455678899999999999 6666652111 00
Q ss_pred CCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCC--ccchhhhcc--ccccceEEEEEeCCCCEEEEEeeCCeEEEEE
Q 007489 33 GSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSR--HGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYK 106 (601)
Q Consensus 33 ~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~--~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~ 106 (601)
..+|...|++++|+|+| .| ++++.||.|+|||+. +++.+..+. .|...|.+++|+|++++|++|+.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 01455579999999999 65 899999999999999 888888886 5678999999999999999999999999999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc---ccccccCCCCccccccccccccCCCC
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE---DKVKRSRGREKPIDFSYHKWAHLGVP 183 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (601)
+.++..... ....+.+|...|.+++|+ |+ ++
T Consensus 178 ~~~~~~~~~-------------~~~~~~~h~~~v~~~~~s---------p~~~~~~------------------------ 211 (450)
T 2vdu_B 178 INSIPEEKF-------------TQEPILGHVSMLTDVHLI---------KDSDGHQ------------------------ 211 (450)
T ss_dssp TTSCCCSSC-------------CCCCSEECSSCEEEEEEE---------ECTTSCE------------------------
T ss_pred cCCcccccc-------------cceeeecccCceEEEEEc---------CCCCCCc------------------------
Confidence 988764110 123677899999999999 87 66
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
+|++++.|+.|++||+.+..
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~------------------------------------------------------------ 231 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCF------------------------------------------------------------ 231 (450)
T ss_dssp EEEEEETTSCEEEEEESCTT------------------------------------------------------------
T ss_pred EEEEEcCCCcEEEEECCCCc------------------------------------------------------------
Confidence 99999999999999987521
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeec------C--------------Cc
Q 007489 264 TSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQ------L--------------PR 322 (601)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~------~--------------~~ 322 (601)
.+..+...|...|.+++|+ ++++|++ +.|+.|++|++.. +..+..+.... . ..
T Consensus 232 --~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 232 --IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT---GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp --CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT---CCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred --eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC---CcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 1122233456889999999 9999999 7899999999986 44332222110 0 02
Q ss_pred CccceeEEEEccCCCeEEEEe-cCCcEEEEEc--CCC---ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 323 KLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDV--SSS---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 323 ~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
....+..++|+|++++|++++ .++.|++|++ .++ +.+..+.. + ..|.+++|+|++.++++++
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-----------~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-----------P-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-----------S-SCEEEEEEETTEEEEEECC
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-----------C-CceEEEEecCCcEEEEEec
Confidence 234689999999999999999 8999999999 555 56666765 5 7899999999654444444
Q ss_pred c------CCeEEEEEcCC
Q 007489 397 C------FGDVYIFNLEI 408 (601)
Q Consensus 397 ~------dg~i~iwd~~~ 408 (601)
. +..|.+|.++.
T Consensus 374 ~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 374 KESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TTCCSSCCCSEEEEEEET
T ss_pred ccCCCCCCcceEEEEEEc
Confidence 3 45578887643
No 119
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4.1e-29 Score=254.17 Aligned_cols=318 Identities=10% Similarity=0.070 Sum_probs=241.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeC--Cccchhhhcccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS--RHGTLLQAHSFH 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~--~~~~~~~~~~~h 77 (601)
++++++.|++|.+||..+++++.++.. ++. +++++|+||| +|++++.|+.|.+||+ .+++.+.++. +
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~-------g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~ 220 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDT-------GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-I 220 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEEC-------STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-C
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEec-------Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-c
Confidence 368899999999999999999999984 344 8899999999 8999999999999999 8888888887 4
Q ss_pred ccceEEEEEeC----CCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccc----------ccc-cee
Q 007489 78 KGDVNALAAAP----SHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA----------HTH-DVR 141 (601)
Q Consensus 78 ~~~V~~l~~s~----~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~ 141 (601)
...+..++|+| ||++|++++. +++|.+||..+.++ +..+.. |.. .+.
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-----------------~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-----------------KQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-----------------EEEEECCEECSSSCCEESCCCEE
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-----------------ceeecccCcccCccccccCCceE
Confidence 56789999999 9999998885 89999999887663 222222 222 677
Q ss_pred EEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceee
Q 007489 142 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 221 (601)
Q Consensus 142 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (601)
++.++ |++. .++++...++.|.+||..+...+
T Consensus 284 ~i~~s---------~~~~-----------------------~~~vs~~~~g~i~vvd~~~~~~l---------------- 315 (543)
T 1nir_A 284 AIIAS---------HEHP-----------------------EFIVNVKETGKVLLVNYKDIDNL---------------- 315 (543)
T ss_dssp EEEEC---------SSSS-----------------------EEEEEETTTTEEEEEECTTSSSC----------------
T ss_pred EEEEC---------CCCC-----------------------EEEEEECCCCeEEEEEecCCCcc----------------
Confidence 88887 7654 37788888999999998753210
Q ss_pred eeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccE
Q 007489 222 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPS 299 (601)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~ 299 (601)
.+..+ .+...+..++|+|+|+++++ + .+++|.
T Consensus 316 --------------------------------------------~~~~i--~~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 316 --------------------------------------------TVTSI--GAAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp --------------------------------------------EEEEE--ECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred --------------------------------------------eeEEe--ccCcCccCceECCCCCEEEEEecCCCeEE
Confidence 00011 12345678899999998766 3 578999
Q ss_pred EEEeecCCCCcceEEEeeecCCcCccceeEEEEccC-CCeEEEEe-cCCcEEEEEcCC-------CceeeeeccCccccc
Q 007489 300 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAG-HDRRIYVVDVSS-------SELLHTFTPCREEHD 370 (601)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~ 370 (601)
+||+.+ +..+..+... ...|......+ ++|+ +..++++. .|++|.+||+.+ +++++++..
T Consensus 350 v~D~~t---g~l~~~i~~g-~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~------ 418 (543)
T 1nir_A 350 VIDSKD---RRLSALVDVG-KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG------ 418 (543)
T ss_dssp EEETTT---TEEEEEEECS-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC------
T ss_pred EEECCC---CeEEEeeccC-CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc------
Confidence 999975 4333222211 11233323333 4677 55566665 579999999988 889999988
Q ss_pred ccCCCCCCCeeEEEEccCCCEEEEEe-------cCCeEEEEEcCCceEE-EEeec-------cCCCceeEEEecCCCCCE
Q 007489 371 REIQPSEPPITKMFTSSDGQWLAAVN-------CFGDVYIFNLEIQRQH-WFISR-------LEGASVTAAGFPPQNNNV 435 (601)
Q Consensus 371 ~~~~~~~~~i~~l~~spd~~~las~~-------~dg~i~iwd~~~~~~~-~~~~~-------~~~~~v~~l~~~p~~~~~ 435 (601)
|...+..+++|||+++|++++ .+++|.|||+.+++.. ..++. .++..+.+++|+| +++.
T Consensus 419 -----~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~ 492 (543)
T 1nir_A 419 -----QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDE 492 (543)
T ss_dssp -----SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSE
T ss_pred -----CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCE
Confidence 777888999999999999987 3779999999988765 44321 2346899999999 9999
Q ss_pred EEEEe-----CCCeEEEEEcCCCCcc
Q 007489 436 LIITT-----SSNQVYVFDVEAKQLG 456 (601)
Q Consensus 436 l~~~~-----~dg~v~vwd~~~~~~~ 456 (601)
|+++. .|+.|.|||.+++++.
T Consensus 493 ~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 493 VWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EEEEeecCCCCCCeEEEEECCCceEE
Confidence 88773 4799999999998863
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=9.9e-30 Score=253.49 Aligned_cols=256 Identities=15% Similarity=0.127 Sum_probs=203.8
Q ss_pred CCceEEEEEEEeeC-C-eEEEEcCCCcEEEeeCCc----------cchhhhccccccceEEEEEeCCCC-EEEEEeeCCe
Q 007489 35 GPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRH----------GTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQ 101 (601)
Q Consensus 35 ~h~~~V~~v~~s~~-g-~l~s~~~dg~i~vwd~~~----------~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~ 101 (601)
.|.+.|++++|+|+ + .|++++.+|.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 68999999999998 4 889999999999999986 567788889999999999999988 9999999999
Q ss_pred EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCC
Q 007489 102 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 181 (601)
Q Consensus 102 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (601)
|++|++..+.. ..........+..|...|.+++|+ |++.
T Consensus 206 i~vwd~~~~~~----------~~~~~~~~~~~~~h~~~v~~v~~~---------p~~~---------------------- 244 (430)
T 2xyi_A 206 ICLWDINATPK----------EHRVIDAKNIFTGHTAVVEDVAWH---------LLHE---------------------- 244 (430)
T ss_dssp EEEEETTSCCB----------GGGEEECSEEECCCSSCEEEEEEC---------SSCT----------------------
T ss_pred EEEEeCCCCCC----------CCceeccceeecCCCCCEeeeEEe---------CCCC----------------------
Confidence 99999987431 001111133456889999999998 7432
Q ss_pred CCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCC
Q 007489 182 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 261 (601)
Q Consensus 182 ~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~ 261 (601)
.+|++++.|+.|++||++......
T Consensus 245 -~~l~s~~~dg~i~i~d~~~~~~~~------------------------------------------------------- 268 (430)
T 2xyi_A 245 -SLFGSVADDQKLMIWDTRNNNTSK------------------------------------------------------- 268 (430)
T ss_dssp -TEEEEEETTSEEEEEETTCSCSSS-------------------------------------------------------
T ss_pred -CEEEEEeCCCeEEEEECCCCCCCc-------------------------------------------------------
Confidence 399999999999999998632100
Q ss_pred CCcceEEEEEecCCCCeEEEEEcCCCC-EEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCC-e
Q 007489 262 ASTSLLVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-Q 338 (601)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~-~ 338 (601)
.+..+ ..|...|.+++|+|++. ++++ +.++.|++|+++.. ...+ ..+..|...|.+++|+|+++ +
T Consensus 269 ----~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~--~~~~-----~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 269 ----PSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--KLKL-----HSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp ----CSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT--TSCS-----EEEECCSSCEEEEEECSSCTTE
T ss_pred ----ceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--CCCe-----EEeecCCCCEEEEEECCCCCCE
Confidence 01111 24567899999999997 5666 68999999999852 2222 33446788999999999995 6
Q ss_pred EEEEecCCcEEEEEcCC--------------CceeeeeccCcccccccCCCCCCCeeEEEEccCCC-EEEEEecCCeEEE
Q 007489 339 LIIAGHDRRIYVVDVSS--------------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYI 403 (601)
Q Consensus 339 l~~~~~dg~i~vwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~-~las~~~dg~i~i 403 (601)
|++++.||.|++||+.. .+++..+.+ |...|.+++|+|+++ +|++++.||.|+|
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-----------HTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-----------CSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC-----------CCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 89999999999999976 244555555 888999999999999 8999999999999
Q ss_pred EEcCCce
Q 007489 404 FNLEIQR 410 (601)
Q Consensus 404 wd~~~~~ 410 (601)
|++....
T Consensus 406 w~~~~~~ 412 (430)
T 2xyi_A 406 WQMAENV 412 (430)
T ss_dssp EEECHHH
T ss_pred eEccccc
Confidence 9987543
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-30 Score=272.32 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=204.0
Q ss_pred hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 71 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
+..+.+|.+.|++++|+|++++|++|+.||.|++|++.++. +.....+.+|...|.+++|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------~~~~~~l~~h~~~V~~l~~s---- 62 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWA---- 62 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------EEEEEEECCCSSCEEEEEEC----
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------CccceeccCCcCceEEEEec----
Confidence 35678999999999999999999999999999999998432 22366778999999999998
Q ss_pred CCCCCCc--ccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 151 REDPLPE--DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 151 ~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
|+ ++ .|++|+.||.|++||+.+...
T Consensus 63 -----~~~~~~------------------------~l~s~s~Dg~I~vwd~~~~~~------------------------ 89 (753)
T 3jro_A 63 -----HPKFGT------------------------ILASCSYDGKVLIWKEENGRW------------------------ 89 (753)
T ss_dssp -----CTTSCS------------------------EEEEEETTSCEEEEEEETTEE------------------------
T ss_pred -----CCCCCC------------------------EEEEEeCCCeEEEEECCCCcc------------------------
Confidence 65 54 999999999999999875110
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEE-EcCCccEEEEeec
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAY-SDHVKPSLFELKK 305 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~-~~~~~v~l~~~~~ 305 (601)
........|...|.+++|+|+ ++++++ +.++.|++|++..
T Consensus 90 -------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 90 -------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp -------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred -------------------------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 011222345688999999999 899888 7899999999986
Q ss_pred CCCCcceEEEeeecCCcCccceeEEEEcc-------------CCCeEEEEecCCcEEEEEcCCC----ceeeeeccCccc
Q 007489 306 GKVGQGEWIINKRQLPRKLQFAHSMIFSY-------------DSSQLIIAGHDRRIYVVDVSSS----ELLHTFTPCREE 368 (601)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-------------d~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~ 368 (601)
... ... ..+..|...|.+++|+| ++.+|++|+.||.|++||+.++ .....+.+
T Consensus 133 ~~~-~~~-----~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~---- 202 (753)
T 3jro_A 133 NGT-TSP-----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---- 202 (753)
T ss_dssp SSC-CCC-----EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC----
T ss_pred CCC-cce-----eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC----
Confidence 221 111 23456778999999999 5899999999999999999776 45556666
Q ss_pred ccccCCCCCCCeeEEEEccC---CCEEEEEecCCeEEEEEcCCceEEE--Eee--ccCCCceeEEEecCCCCCEEEEEeC
Q 007489 369 HDREIQPSEPPITKMFTSSD---GQWLAAVNCFGDVYIFNLEIQRQHW--FIS--RLEGASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 369 ~~~~~~~~~~~i~~l~~spd---~~~las~~~dg~i~iwd~~~~~~~~--~~~--~~~~~~v~~l~~~p~~~~~l~~~~~ 441 (601)
|...|++++|+|+ +++|++++.||.|++||+.+++... .+. ..+...|++++|+| ++++|++++.
T Consensus 203 -------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~ 274 (753)
T 3jro_A 203 -------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGG 274 (753)
T ss_dssp -------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECS
T ss_pred -------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcC
Confidence 8999999999999 8999999999999999998864211 111 12457899999999 9999999999
Q ss_pred CCeEEEEEcCCC
Q 007489 442 SNQVYVFDVEAK 453 (601)
Q Consensus 442 dg~v~vwd~~~~ 453 (601)
||.|++|++..+
T Consensus 275 Dg~I~vwd~~~~ 286 (753)
T 3jro_A 275 DNKVTLWKENLE 286 (753)
T ss_dssp SSCEECCBCCSS
T ss_pred CCEEEEEecCCC
Confidence 999999999854
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=243.05 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=185.6
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
....+.+++++|++|+.||.|++||+.+++. ...+. ...|.++.++
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~-----------------~~~~~--~~~v~~~~~~--------------- 85 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKT-----------------ITTIT--TPNPRTGGEH--------------- 85 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSC-----------------EEEEE--EECCCTTCCC---------------
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcE-----------------EEEEe--cCCceeeeeC---------------
Confidence 3345556889999999999999999998764 22222 3344444443
Q ss_pred ccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCee
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 241 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 241 (601)
+.+++++.|+.|++|+... .+
T Consensus 86 ---------------------~~~~s~s~D~~i~~w~~~~--------------------------------------~~ 106 (343)
T 3lrv_A 86 ---------------------PAIISRGPCNRLLLLYPGN--------------------------------------QI 106 (343)
T ss_dssp ---------------------CSEEEECSTTEEEEEETTT--------------------------------------EE
T ss_pred ---------------------CceEEecCCCeEEEEEccC--------------------------------------ce
Confidence 1389999999999999763 33
Q ss_pred EEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC--CCCEEEE-EcCCccEEEEeecCCCCcceEEEeee
Q 007489 242 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN--SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR 318 (601)
Q Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~ 318 (601)
.+|++.... .+......+...|.+++++| +++++++ +.|+.|++||+.. +..+ ..
T Consensus 107 ~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~----~~ 164 (343)
T 3lrv_A 107 TILDSKTNK---------------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED---DSQY----IV 164 (343)
T ss_dssp EEEETTTCC---------------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS---SCEE----EE
T ss_pred EEeecCCcc---------------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC---CcEE----EE
Confidence 445544322 45556666778899999999 9999998 7899999999986 3332 11
Q ss_pred cCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCcee-eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 319 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 319 ~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
....+...+.+++|+|++.+|++|+.||.|++||+.+++.+ ..+... |...|++++|+|++.+|++++
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~----------h~~~v~~l~fs~~g~~l~s~~- 233 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVD----------EEAKIKEVKFADNGYWMVVEC- 233 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCC----------TTSCEEEEEECTTSSEEEEEE-
T ss_pred EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEecc----------CCCCEEEEEEeCCCCEEEEEe-
Confidence 12334557999999999999999999999999999998876 666642 788999999999999999999
Q ss_pred CCeEEEEEcCCceEEEEeecc--CCCce--eEEEecCCCCCEEEEEeC-CCeEEEEEcCCCC
Q 007489 398 FGDVYIFNLEIQRQHWFISRL--EGASV--TAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQ 454 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~--~~~~v--~~l~~~p~~~~~l~~~~~-dg~v~vwd~~~~~ 454 (601)
++.|++||+.+.+....+..+ +...+ .+++|+| ++++|++++. |+.|++|+++...
T Consensus 234 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 234 DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccc
Confidence 559999999988764333321 11233 4699999 9999999998 9999999997654
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.3e-29 Score=249.72 Aligned_cols=269 Identities=15% Similarity=0.178 Sum_probs=205.5
Q ss_pred hccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 73 AHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
....|.+.|++++|+|+ +.+|++++.||.|++|++........ ..........+.+|...|.+++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~----- 190 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------PSGECQPDLRLRGHQKEGYGLSWN----- 190 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------TTCCCCCSEEEECCSSCCCCEEEC-----
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------ccccCCCcEEecCCCCCeEEEEeC-----
Confidence 34579999999999997 68999999999999999987321000 001112245667899999999998
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
|++. .+|++|+.||.|++|++......... +
T Consensus 191 ----~~~~-----------------------~~l~s~~~dg~i~vwd~~~~~~~~~~-------------~--------- 221 (430)
T 2xyi_A 191 ----PNLN-----------------------GYLLSASDDHTICLWDINATPKEHRV-------------I--------- 221 (430)
T ss_dssp ----TTST-----------------------TEEEEECTTSCEEEEETTSCCBGGGE-------------E---------
T ss_pred ----CCCC-----------------------CeEEEEeCCCeEEEEeCCCCCCCCce-------------e---------
Confidence 7664 38999999999999999862110000 0
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCC
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~ 309 (601)
........|...|.+++|+| ++.+|++ +.++.|++|+++.....
T Consensus 222 ----------------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 222 ----------------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp ----------------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred ----------------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 00012224567899999999 6678877 68999999999863212
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCC-eEEEEecCCcEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
..+ ..+..|...|++++|+|++. +|++|+.||.|++||+.+ .+.+..+.. |...|++++|+|
T Consensus 268 ~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-----------h~~~v~~i~~sp 331 (430)
T 2xyi_A 268 KPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-----------HKDEIFQVQWSP 331 (430)
T ss_dssp SCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-----------CSSCEEEEEECS
T ss_pred cce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-----------CCCCEEEEEECC
Confidence 333 22346778999999999987 688999999999999987 467788887 889999999999
Q ss_pred CCC-EEEEEecCCeEEEEEcCCc--------------eEEEEeeccCCCceeEEEecCCCCC-EEEEEeCCCeEEEEEcC
Q 007489 388 DGQ-WLAAVNCFGDVYIFNLEIQ--------------RQHWFISRLEGASVTAAGFPPQNNN-VLIITTSSNQVYVFDVE 451 (601)
Q Consensus 388 d~~-~las~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~v~~l~~~p~~~~-~l~~~~~dg~v~vwd~~ 451 (601)
+++ +|++++.||.|+|||+... +...... .|...|++++|+| ++. +|++++.||.|+||++.
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcc
Confidence 995 7999999999999999872 3333332 3557899999999 888 89999999999999998
Q ss_pred CCC
Q 007489 452 AKQ 454 (601)
Q Consensus 452 ~~~ 454 (601)
...
T Consensus 410 ~~~ 412 (430)
T 2xyi_A 410 ENV 412 (430)
T ss_dssp HHH
T ss_pred ccc
Confidence 754
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.4e-28 Score=239.91 Aligned_cols=266 Identities=12% Similarity=0.176 Sum_probs=210.7
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEE-EEEeeCCeEEEEEeccCcCCCCCCCCCccccceeE
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 128 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 128 (601)
.+++++.|+.|++||+.+++++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------- 66 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------- 66 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----------------
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE----------------
Confidence 57889999999999999999998888775 58999999999987 5777999999999988763
Q ss_pred EecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEE-EEecCCCeEEEEeccccCCcCC
Q 007489 129 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML-ISAGDDTKLFAYCANEFTKFSP 207 (601)
Q Consensus 129 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~~~~~~~~~~~~~ 207 (601)
...+..+ ..+.+++|+ |+++ .| ++++.++.|++||+.+.+
T Consensus 67 -~~~~~~~-~~v~~~~~s---------pdg~------------------------~l~~~~~~~~~v~v~d~~~~~---- 107 (391)
T 1l0q_A 67 -IATVPAG-SSPQGVAVS---------PDGK------------------------QVYVTNMASSTLSVIDTTSNT---- 107 (391)
T ss_dssp -EEEEECS-SSEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEEETTTTE----
T ss_pred -EEEEECC-CCccceEEC---------CCCC------------------------EEEEEECCCCEEEEEECCCCe----
Confidence 3334333 389999998 8886 55 566677999999987521
Q ss_pred CccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 007489 208 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 287 (601)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 287 (601)
.+..+. +...+.+++|+|++
T Consensus 108 ----------------------------------------------------------~~~~~~--~~~~~~~~~~s~dg 127 (391)
T 1l0q_A 108 ----------------------------------------------------------VAGTVK--TGKSPLGLALSPDG 127 (391)
T ss_dssp ----------------------------------------------------------EEEEEE--CSSSEEEEEECTTS
T ss_pred ----------------------------------------------------------EEEEEe--CCCCcceEEECCCC
Confidence 111111 23568899999999
Q ss_pred CEEE-E-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeE-EEEecCCcEEEEEcCCCceeeeecc
Q 007489 288 MLFA-Y-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL-IIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 288 ~~l~-~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
+.++ + +.++.|++|++.. +..+..+ .. ...+..++|+|++++| ++++.++.|++||+.+++.+..+.
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~---~~~~~~~-----~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~- 197 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVT---KAVINTV-----SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK- 197 (391)
T ss_dssp SEEEEEETTTTEEEEEETTT---TEEEEEE-----EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCC---CcEEEEE-----ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-
Confidence 9774 4 4689999999875 3333211 11 2356899999999987 566778999999999988877776
Q ss_pred CcccccccCCCCCCCeeEEEEccCCCEEEEEe---cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEE-EEEe
Q 007489 365 CREEHDREIQPSEPPITKMFTSSDGQWLAAVN---CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVL-IITT 440 (601)
Q Consensus 365 ~~~~~~~~~~~~~~~i~~l~~spd~~~las~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~~~~ 440 (601)
+...+.+++|+|++++|++++ .++.|++||+.+++....++. + ..+.+++|+| ++++| ++++
T Consensus 198 -----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~s~-dg~~l~~s~~ 263 (391)
T 1l0q_A 198 -----------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-G-PDPAGIAVTP-DGKKVYVALS 263 (391)
T ss_dssp -----------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-C-SSEEEEEECT-TSSEEEEEET
T ss_pred -----------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-C-CCccEEEEcc-CCCEEEEEcC
Confidence 456789999999999999888 689999999999988777765 3 3689999999 99877 5667
Q ss_pred CCCeEEEEEcCCCCc
Q 007489 441 SSNQVYVFDVEAKQL 455 (601)
Q Consensus 441 ~dg~v~vwd~~~~~~ 455 (601)
.|+.|++||+.++++
T Consensus 264 ~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 264 FXNTVSVIDTATNTI 278 (391)
T ss_dssp TTTEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCcE
Confidence 899999999998874
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.8e-30 Score=251.64 Aligned_cols=262 Identities=10% Similarity=-0.038 Sum_probs=175.8
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEee--------CC-eEEEEcCCCcEEEeeCCccchh
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR--------CG-TLVSADSTGSVQFWDSRHGTLL 71 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--------~g-~l~s~~~dg~i~vwd~~~~~~~ 71 (601)
+||+|+.|++|+|||+.+++....... ....+|.+.|++|+|+| |+ +||||+.|++|+|||+.++.++
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 489999999999999998877654332 23448999999999998 78 8999999999999999888888
Q ss_pred hhccccccceEEEEEeCCC-CEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecccc
Q 007489 72 QAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 150 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 150 (601)
..+..|...|.+++|+|++ .+|++|+.|++|++||+.+++. ......+........+.
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~-----------------~~~~~~~~~~~~~~~~s---- 238 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS-----------------AEENSQTELVKNPWLLT---- 238 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------------------------CSCCCSEE----
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc-----------------cccccccCCcccceEEe----
Confidence 8888899999999999987 4799999999999999988763 11111111111111110
Q ss_pred CCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 151 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 151 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
++. .. .
T Consensus 239 -----~~~-----------------------------------------~~----------------------------~ 244 (393)
T 4gq1_A 239 -----LNT-----------------------------------------LP----------------------------L 244 (393)
T ss_dssp -----EES-----------------------------------------GG----------------------------G
T ss_pred -----ccc-----------------------------------------cc----------------------------c
Confidence 000 00 0
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc-CCCCEEEE-EcCCccEEEEeecCCC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-NSGMLFAY-SDHVKPSLFELKKGKV 308 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~-~~~~~v~l~~~~~~~~ 308 (601)
........+...+.++.|+ ++++.|++ +.|+.+++|++.....
T Consensus 245 -----------------------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 245 -----------------------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp -----------------------------------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred -----------------------------------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 0000001223556777775 78998888 6899999999876322
Q ss_pred CcceEEE----ee-------ecCCcCccceeEEEEcc--CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCC
Q 007489 309 GQGEWII----NK-------RQLPRKLQFAHSMIFSY--DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 375 (601)
Q Consensus 309 ~~~~~~~----~~-------~~~~~~~~~v~~i~~s~--d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 375 (601)
...+... .. .....+. ......|+| ++.++++|+.||.|++||+.+++....+..
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~----------- 357 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ----------- 357 (393)
T ss_dssp --------------CCSCSEEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-----------
T ss_pred CceEeeecCccccEEEccccccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-----------
Confidence 1111000 00 0000111 112233443 444667788899999999999988887777
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 408 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~ 408 (601)
|..+|.+++|||||++||+++.+| +.+|.+..
T Consensus 358 ~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 358 LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 888999999999999999998777 77776643
No 126
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=5.2e-28 Score=267.65 Aligned_cols=396 Identities=12% Similarity=0.070 Sum_probs=268.2
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC------CcEEEeeCCccchhhhc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST------GSVQFWDSRHGTLLQAH 74 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d------g~i~vwd~~~~~~~~~~ 74 (601)
||.++. +.|++|++.+++ ..++. +|...|.+++||||| +|++++.+ ..|++||+.+++ ...+
T Consensus 27 iaf~~~-~~l~~~~~~gg~-~~~lt--------~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l 95 (1045)
T 1k32_A 27 IIFVCC-DDLWEHDLKSGS-TRKIV--------SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI 95 (1045)
T ss_dssp EEEEET-TEEEEEETTTCC-EEEEE--------CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC
T ss_pred EEEEEC-CcEEEEECCCCc-EEEee--------eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc
Confidence 455554 699999998766 45676 799999999999999 78877543 479999998776 5678
Q ss_pred cccccce-------EEEEEeCCCCEEEEEeeC------CeEEEEEeccCcCCCCCCCCC---------------------
Q 007489 75 SFHKGDV-------NALAAAPSHNRVFSTGSD------GQVILYKASCESIGPNDGLSS--------------------- 120 (601)
Q Consensus 75 ~~h~~~V-------~~l~~s~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~--------------------- 120 (601)
..|...+ .+++|+|||+.+++++.+ ..|.+|++.++..........
T Consensus 96 t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~ 175 (1045)
T 1k32_A 96 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPH 175 (1045)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTT
T ss_pred ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccc
Confidence 8898888 999999999977777754 357778877665311000000
Q ss_pred ------ccccceeEE-----ecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 121 ------SEVIKKWIY-----VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 121 ------~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
......|.. ...+..|...+.++.|+ ++ .++++++
T Consensus 176 ~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s---------~d-------------------------~l~~~~~ 221 (1045)
T 1k32_A 176 WKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV---------GH-------------------------RIYFITD 221 (1045)
T ss_dssp STTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE---------TT-------------------------EEEEEEC
T ss_pred cccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe---------CC-------------------------EEEEEEe
Confidence 000011110 11123444555555554 33 2777888
Q ss_pred CCCeEEEEeccccC-CcCCCccCCCCCccceeeeeccccCCCeEEEEE-eCCeeEEeeccccCCcccCCCCCCCCCcceE
Q 007489 190 DDTKLFAYCANEFT-KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLL 267 (601)
Q Consensus 190 ~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (601)
.|+.+.+|.+.... ...... .. ..+...+|+|+|..++. .++.+.+|++...... ...+.......
T Consensus 222 ~dg~~~l~~~~~~g~~~~~l~---~~-----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~----~l~~~~~~~~~ 289 (1045)
T 1k32_A 222 IDGFGQIYSTDLDGKDLRKHT---SF-----TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE----KIEIGDLESPE 289 (1045)
T ss_dssp TTSSCEEEEEETTSCSCEECC---CC-----CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEE----ECCCCCCCBCC
T ss_pred ccCceEEEEEeCCCCcceEec---CC-----CCcceeeEcCCCCEEEEEeCCEEEEecCCceEee----eeccCcccccc
Confidence 88888888765311 111000 00 11234578899875544 5588888887211100 00000000000
Q ss_pred EEEEecCCCCeEEEEEc-CCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCcc-ceeEEEEccCCCeEEEEecC
Q 007489 268 VQVKSKASRKIICSTIS-NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ-FAHSMIFSYDSSQLIIAGHD 345 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s-~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~s~d~~~l~~~~~d 345 (601)
....+...+.+++|| |||+.|+++.++.+.+|++.. +.. ..+..+.. .+..++|+ ||+.|++++.+
T Consensus 290 --~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~---~~~------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~ 357 (1045)
T 1k32_A 290 --DRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG---TYV------LKVPEPLRIRYVRRGGD-TKVAFIHGTRE 357 (1045)
T ss_dssp --SEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS---SBE------EECSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred --cccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC---Cce------EEccCCCcceEEeeeEc-CCCeEEEEECC
Confidence 001123468899999 999999997788899988764 221 22445555 78999999 99999999988
Q ss_pred CcEE-EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCcee
Q 007489 346 RRIY-VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT 424 (601)
Q Consensus 346 g~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 424 (601)
+.+. +|++..++.. .+.. |...+..++|||||++||+++.++.|++||+.+++....+.. +...+.
T Consensus 358 ~~l~~~~d~~~~~~~-~l~~-----------~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~ 424 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAE-KFEE-----------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMIT 424 (1045)
T ss_dssp EEEEEEEETTTCCEE-ECCC-----------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCC
T ss_pred CceEEEEECCCCCce-EecC-----------CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-CCCCcc
Confidence 8888 9998876543 3334 778899999999999999999999999999999987766543 446789
Q ss_pred EEEecCCCCCEEEEEeCCC----------eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE
Q 007489 425 AAGFPPQNNNVLIITTSSN----------QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY 494 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~~dg----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~ 494 (601)
+++|+| |+++|++++.++ .|++||+.+++. ..+..|...+..++|+|+ +..+++.
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------------~~l~~~~~~~~~~~~spd--G~~l~~~ 489 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------------FAATTENSHDYAPAFDAD--SKNLYYL 489 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------------EECSCSSSBEEEEEECTT--SCEEEEE
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCcE------------EEeeCCCcccCCceEcCC--CCEEEEE
Confidence 999999 999999887654 899999998763 234567778899999999 4455444
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=2.3e-28 Score=241.48 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=208.0
Q ss_pred EEeee----cCC----cEEEEEC--CCCceEEE--EEeccCCCCCCCceEEEEEEEee---------------CCeEEEE
Q 007489 2 LYSGS----SDG----YIRSWDA--KLGYEIYR--ITVGLGGLGSGPELCIWSLLSLR---------------CGTLVSA 54 (601)
Q Consensus 2 l~tg~----~dg----~i~iwd~--~~~~~~~~--~~~~~~~~~~~h~~~V~~v~~s~---------------~g~l~s~ 54 (601)
+++|+ .|| +|+|||+ .+++++.. +. +|...+..+++++ ..+++.+
T Consensus 78 ~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~ 149 (415)
T 2hqs_A 78 VVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK--------VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 (415)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE--------ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE--------cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence 45665 467 9999999 99998844 55 7888888888775 3466666
Q ss_pred cCC------CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCC---eEEEEEeccCcCCCCCCCCCccccc
Q 007489 55 DST------GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG---QVILYKASCESIGPNDGLSSSEVIK 125 (601)
Q Consensus 55 ~~d------g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~ 125 (601)
+.+ +.|++||+. +.....+.+|...|.+++|+|||++|++++.|+ .|++||+.+++.
T Consensus 150 s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~------------- 215 (415)
T 2hqs_A 150 VQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------- 215 (415)
T ss_dssp EECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-------------
T ss_pred EecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-------------
Confidence 543 799999997 566778888999999999999999999999885 999999988652
Q ss_pred eeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE-EecCCCeEEEEeccccCC
Q 007489 126 KWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-SAGDDTKLFAYCANEFTK 204 (601)
Q Consensus 126 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~v~~~~~~~~~~ 204 (601)
..+..|...+.+++|+ |||+ .|+ +++.++.
T Consensus 216 -----~~l~~~~~~~~~~~~s---------pdg~------------------------~la~~~~~~g~----------- 246 (415)
T 2hqs_A 216 -----RQVASFPRHNGAPAFS---------PDGS------------------------KLAFALSKTGS----------- 246 (415)
T ss_dssp -----EEEECCSSCEEEEEEC---------TTSS------------------------EEEEEECTTSS-----------
T ss_pred -----EEeecCCCcccCEEEc---------CCCC------------------------EEEEEEecCCC-----------
Confidence 2333444455555555 5554 333 3333321
Q ss_pred cCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 007489 205 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS 284 (601)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 284 (601)
T Consensus 247 -------------------------------------------------------------------------------- 246 (415)
T 2hqs_A 247 -------------------------------------------------------------------------------- 246 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-C--cEEEEEcCCCceeee
Q 007489 285 NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-R--RIYVVDVSSSELLHT 361 (601)
Q Consensus 285 ~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g--~i~vwd~~~~~~~~~ 361 (601)
..|++|++.. +.. ..+..+...+.+++|+|||++|++++.+ + .|++||+.+++. ..
T Consensus 247 -----------~~i~~~d~~~---~~~------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~ 305 (415)
T 2hqs_A 247 -----------LNLYVMDLAS---GQI------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QR 305 (415)
T ss_dssp -----------CEEEEEETTT---CCE------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EE
T ss_pred -----------ceEEEEECCC---CCE------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EE
Confidence 1133333332 111 1233444567888999999988887763 4 688889887764 33
Q ss_pred eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC---CeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEE
Q 007489 362 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLII 438 (601)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~ 438 (601)
+.. +...+.+++|||||++|++++.+ ..|++||+.+++.. .+.. + ..+.+++|+| ++++|++
T Consensus 306 l~~-----------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~-~-~~~~~~~~sp-dg~~l~~ 370 (415)
T 2hqs_A 306 ITW-----------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS-T-FLDETPSLAP-NGTMVIY 370 (415)
T ss_dssp CCC-----------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC-S-SSCEEEEECT-TSSEEEE
T ss_pred Eec-----------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC-C-CCcCCeEEcC-CCCEEEE
Confidence 433 56678999999999999988764 58999999998874 3332 2 3799999999 9999999
Q ss_pred EeCCC---eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 439 TTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 439 ~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
++.++ .|++||+.++. ...+..|.+.|.+++|+|.
T Consensus 371 ~s~~~~~~~l~~~d~~g~~------------~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRF------------KARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEETTEEEEEEEETTSCC------------EEECCCSSSEEEEEEECCC
T ss_pred EEcCCCccEEEEEECCCCc------------EEEeeCCCCCCcCCccccc
Confidence 98877 89999998665 3356678899999999997
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.6e-28 Score=244.21 Aligned_cols=268 Identities=13% Similarity=0.078 Sum_probs=211.1
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
+++++.|+.|++||+.+++.+..+... ...+|...|++++|+|++ .+++++.|+.|++||+.+++.+..+..|...
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~ 213 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPE---KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW 213 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCH---HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcc---cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence 677888999999999999988644311 112788999999999999 8899999999999999999999989899999
Q ss_pred eEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 81 VNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 81 V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
+.+++|+|++++++ +++.|+.|++||+.+++. ...+.. ...+.+++++ |+++
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------------~~~~~~-~~~~~~~~~~---------~~g~ 266 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-----------------IRKTDK-IGLPRGLLLS---------KDGK 266 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------------EEECCC-CSEEEEEEEC---------TTSS
T ss_pred eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-----------------EEEecC-CCCceEEEEc---------CCCC
Confidence 99999999999886 455799999999988763 333333 3458899998 8886
Q ss_pred ccccCCCCccccccccccccCCCCEEEEec--------CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAG--------DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
.+++++ .|+.|++||+.+.+
T Consensus 267 ------------------------~l~~~~~~~~~~~~~dg~i~~~d~~~~~---------------------------- 294 (433)
T 3bws_A 267 ------------------------ELYIAQFSASNQESGGGRLGIYSMDKEK---------------------------- 294 (433)
T ss_dssp ------------------------EEEEEEEESCTTCSCCEEEEEEETTTTE----------------------------
T ss_pred ------------------------EEEEEECCCCccccCCCeEEEEECCCCc----------------------------
Confidence 777777 47889999876521
Q ss_pred EEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCC
Q 007489 232 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVG 309 (601)
Q Consensus 232 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~ 309 (601)
.+..+ .+...+.+++|+|+++.+++ +.++.+++|++.. +
T Consensus 295 ----------------------------------~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~ 335 (433)
T 3bws_A 295 ----------------------------------LIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---K 335 (433)
T ss_dssp ----------------------------------EEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---T
T ss_pred ----------------------------------EEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---C
Confidence 11111 11245788999999976544 5889999999975 3
Q ss_pred cceEEEeeecCCcCccceeEEEEccCCCeEEEEec---------------CCcEEEEEcCCCceeeeeccCcccccccCC
Q 007489 310 QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---------------DRRIYVVDVSSSELLHTFTPCREEHDREIQ 374 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 374 (601)
..+..+ .+...+.+++|+|++++|++++. ||.|++||+.+++.+..+..
T Consensus 336 ~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------- 399 (433)
T 3bws_A 336 KVQKSI------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------- 399 (433)
T ss_dssp EEEEEE------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC----------
T ss_pred cEEEEe------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC----------
Confidence 332111 23457899999999999988887 47999999999998888874
Q ss_pred CCCCCeeEEEEccCCCEEEEEec-CCeEEEEEcCC
Q 007489 375 PSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEI 408 (601)
Q Consensus 375 ~~~~~i~~l~~spd~~~las~~~-dg~i~iwd~~~ 408 (601)
...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 400 --~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 --GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 457899999999999998875 99999999864
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6.9e-27 Score=214.56 Aligned_cols=279 Identities=11% Similarity=0.113 Sum_probs=187.6
Q ss_pred CceEEEEEeccCCCCCCCceEEEEEEEeeCC----eEEEEcCCCcEEEeeCCcc---chhhhccccccceEEEEEeCCCC
Q 007489 19 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAPSHN 91 (601)
Q Consensus 19 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g----~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~s~~~~ 91 (601)
.+.+.+++.+. .+..-.+.++.|-..| -+++++ ...|++|+..++ ++++++..|+.+|..+.+.||..
T Consensus 25 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 99 (356)
T 2w18_A 25 LQLVSELKNPS----GSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY 99 (356)
T ss_dssp EEEEEEECCCC----SSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC
T ss_pred eeeeehhcCCC----CCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc
Confidence 34556665321 1344566777776555 245555 468999999988 88999999999999999999875
Q ss_pred EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCc----ccccccCCCC
Q 007489 92 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE----DKVKRSRGRE 167 (601)
Q Consensus 92 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d----~~~~~~~~~~ 167 (601)
-|++... .. .+...|++++++ || ++
T Consensus 100 ~~~~~~~--------------------------------~~--~~~~~v~sla~s---------pd~~~~~~-------- 128 (356)
T 2w18_A 100 NLVCVAL--------------------------------GN--LEIREIRALFCS---------SDDESEKQ-------- 128 (356)
T ss_dssp SCEEEEE--------------------------------CS--SSEEEEEEECC---------------CCE--------
T ss_pred ceeeeee--------------------------------cc--ccccceEEEEEC---------CCcccccc--------
Confidence 4543321 11 236678999988 88 44
Q ss_pred ccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecc
Q 007489 168 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 247 (601)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~ 247 (601)
.+++++.+ +.+|++.
T Consensus 129 ----------------~l~s~g~~--~~v~~l~----------------------------------------------- 143 (356)
T 2w18_A 129 ----------------VLLKSGNI--KAVLGLT----------------------------------------------- 143 (356)
T ss_dssp ----------------EEEEEEEE--EEEEEET-----------------------------------------------
T ss_pred ----------------EEEeCCCe--EEEEecC-----------------------------------------------
Confidence 67776633 4444432
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE---cCCccEEEEeecCCCCcceEEEeeecCCcCc
Q 007489 248 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRKL 324 (601)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (601)
+++++.++ .++.|++|++.. .+..+ ..+..|.
T Consensus 144 --------------------------------------~g~lv~ss~~g~d~~V~~~~~s~--dG~~~-----~s~~~~~ 178 (356)
T 2w18_A 144 --------------------------------------KRRLVSSSGTLSDQQVEVMTFAE--DGGGK-----ENQFLMP 178 (356)
T ss_dssp --------------------------------------TTEEEEEESSSTTCEEEEEEECT--TSCEE-----EEEEECC
T ss_pred --------------------------------------CCcEEEecccCCCCcEEEEEECC--CCcee-----eeeccCC
Confidence 23444442 366666666643 12222 2233566
Q ss_pred cceeEEEEcc---CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE---------
Q 007489 325 QFAHSMIFSY---DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL--------- 392 (601)
Q Consensus 325 ~~v~~i~~s~---d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l--------- 392 (601)
..++.++|++ ++.+|++++.|++|+|||+.++++++++.++.. +...+.+++|||+|+++
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--------~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--------YQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----------CCCEEEEEEETTEEEEEEC-----
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc--------ceeeeEEEEECCCCCEEEEeccCCCc
Confidence 6778889999 789999999999999999999999999986321 34578888999999986
Q ss_pred ---EEEecCCeEEEEEcCCceEEEEe----eccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCC
Q 007489 393 ---AAVNCFGDVYIFNLEIQRQHWFI----SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFV 465 (601)
Q Consensus 393 ---as~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 465 (601)
++|+.|++|++||..+++....+ +..|...+.+. +. ++.++++++.|++|+|||+.++++
T Consensus 251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~-sg~~lASgS~DgTIkIWDl~tGk~---------- 317 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DV-KDHCAAAILTSGTIAIWDLLLGQC---------- 317 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EE-ETTEEEEEETTSCEEEEETTTCSE----------
T ss_pred ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--cc-CCCEEEEEcCCCcEEEEECCCCcE----------
Confidence 56888999999999999876554 22333334333 33 467899999999999999999985
Q ss_pred cCcccccCCCcEE-EEEeCCC
Q 007489 466 LPRRYQEFPGEVI-GLSFSPS 485 (601)
Q Consensus 466 ~~~~~~~~~~~v~-~i~~~p~ 485 (601)
...+.+|...+. .++|+|+
T Consensus 318 -l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 318 -TALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp -EEEECCC--CCCCEEEECSS
T ss_pred -EEEecCCCCCeEEEEEECCC
Confidence 446778876655 6899998
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.6e-26 Score=233.51 Aligned_cols=332 Identities=13% Similarity=0.127 Sum_probs=236.1
Q ss_pred EEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEe--ccCcCCCCCCCCC
Q 007489 44 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA--SCESIGPNDGLSS 120 (601)
Q Consensus 44 ~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~--~~~~~~~~~~~~~ 120 (601)
+|+|++ .+++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-------- 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-------- 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE--------
Confidence 378999 788999999999999999999998884333 889999999999999999999999999 55542
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCC----cccccccCCCCccccccccccccCCCCEEEEecC-CCeEE
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP----EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLF 195 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~ 195 (601)
...+. +...++.++|+ | ||+ ++++++. +++|.
T Consensus 215 ---------~~~i~-~g~~p~~va~s---------p~~~~dg~------------------------~l~v~~~~~~~v~ 251 (543)
T 1nir_A 215 ---------VAEIK-IGIEARSVESS---------KFKGYEDR------------------------YTIAGAYWPPQFA 251 (543)
T ss_dssp ---------EEEEE-CCSEEEEEEEC---------CSTTCTTT------------------------EEEEEEEESSEEE
T ss_pred ---------EEEEe-cCCCcceEEeC---------CCcCCCCC------------------------EEEEEEccCCeEE
Confidence 34444 45578999998 8 887 8888874 88999
Q ss_pred EEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCC
Q 007489 196 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (601)
+||..+.+.+.... ....... + ......
T Consensus 252 v~D~~t~~~~~~i~------------------------------------~~g~~~~-------~---------~~~~~~ 279 (543)
T 1nir_A 252 IMDGETLEPKQIVS------------------------------------TRGMTVD-------T---------QTYHPE 279 (543)
T ss_dssp EEETTTCCEEEEEE------------------------------------CCEECSS-------S---------CCEESC
T ss_pred EEeccccccceeec------------------------------------ccCcccC-------c---------cccccC
Confidence 99987632111000 0000000 0 000112
Q ss_pred CCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEE
Q 007489 276 RKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd 352 (601)
..+.++.++|++..+++ ..++.|.+|++.. ...+. +... .+...+..++|+|+|++|++++ .+++|.+||
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~---~~~l~-~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKD---IDNLT-VTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTT---SSSCE-EEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecC---CCcce-eEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 46889999998876655 4778999999875 22221 1111 1234567899999999877665 588999999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccC-CCEEEEEe-cCCeEEEEEcCC-------ceEEEEeeccCCCce
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVN-CFGDVYIFNLEI-------QRQHWFISRLEGASV 423 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-~~~las~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~v 423 (601)
+.+++++.++.... ..|......+ ++|+ +.+++++. .|++|.|||+++ .+....++. ++..+
T Consensus 353 ~~tg~l~~~i~~g~-------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~-~g~~~ 423 (543)
T 1nir_A 353 SKDRRLSALVDVGK-------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG-QGGGS 423 (543)
T ss_dssp TTTTEEEEEEECSS-------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCC
T ss_pred CCCCeEEEeeccCC-------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc-CCCCc
Confidence 99999888876421 1144433333 5777 66667765 689999999998 788878775 55678
Q ss_pred eEEEecCCCCCEEEEEe-------CCCeEEEEEcCCCCcc-cchhcccCCcC-c---ccccCCCcEEEEEeCCCCCCCEE
Q 007489 424 TAAGFPPQNNNVLIITT-------SSNQVYVFDVEAKQLG-EWSMQHTFVLP-R---RYQEFPGEVIGLSFSPSPSSSSV 491 (601)
Q Consensus 424 ~~l~~~p~~~~~l~~~~-------~dg~v~vwd~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~v~~i~~~p~~~~~~~ 491 (601)
..+.|+| ++++|++++ .+++|.|||+.+++.. .. ++ . .+..+...+..+.|+|+ +..+
T Consensus 424 ~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~--g~~~ 493 (543)
T 1nir_A 424 LFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-------LPIAEWADLGEGAKRVVQPEYNKR--GDEV 493 (543)
T ss_dssp CCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-------ECHHHHHCCCSSCCEEEEEEECSS--SSEE
T ss_pred eEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE-------eechhhcccCCCCCceEeccCCCC--CCEE
Confidence 8899999 999999987 2779999999988742 10 00 0 12345678999999999 5566
Q ss_pred E--EEc----CceEEEEeCC
Q 007489 492 I--IYS----ARAMCVIDFG 505 (601)
Q Consensus 492 ~--~~~----~~~~~~~~~~ 505 (601)
| +|+ .+.+.++|..
T Consensus 494 ~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 494 WFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEEEECCTTSCCEEEEEETT
T ss_pred EEEeecCCCCCCeEEEEECC
Confidence 6 443 4778888864
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.3e-25 Score=248.60 Aligned_cols=348 Identities=13% Similarity=0.093 Sum_probs=240.6
Q ss_pred EEeeecC------CcEEEEECCCCceEEEEEeccCCCCCCCceEE-------EEEEEeeCC-eEEEEcCC------CcEE
Q 007489 2 LYSGSSD------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCI-------WSLLSLRCG-TLVSADST------GSVQ 61 (601)
Q Consensus 2 l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V-------~~v~~s~~g-~l~s~~~d------g~i~ 61 (601)
||.++.+ ..|++||+.+++ ..++. .|...+ .+++|+||| .+++++.+ ..|.
T Consensus 67 la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt--------~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~ 137 (1045)
T 1k32_A 67 IAIRVMRGSSLNTADLYFYNGENGE-IKRIT--------YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLY 137 (1045)
T ss_dssp EEEEEEESTTCCEEEEEEEETTTTE-EEECC--------CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEE
T ss_pred EEEEEeeccCCCCCeEEEEECCCCC-eEEcc--------cCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEE
Confidence 5655443 479999998776 56666 788888 999999999 66777644 3578
Q ss_pred EeeCCccchhh-------------------------------------------------hccccccceEEEEEeCCCCE
Q 007489 62 FWDSRHGTLLQ-------------------------------------------------AHSFHKGDVNALAAAPSHNR 92 (601)
Q Consensus 62 vwd~~~~~~~~-------------------------------------------------~~~~h~~~V~~l~~s~~~~~ 92 (601)
+||+.+++... .+.+|...+.++.|+++ ..
T Consensus 138 ~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l 216 (1045)
T 1k32_A 138 RVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RI 216 (1045)
T ss_dssp EEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EE
T ss_pred EEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EE
Confidence 88876554221 12345667778888877 56
Q ss_pred EEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccc
Q 007489 93 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 172 (601)
Q Consensus 93 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 172 (601)
+++++.|+.+.+|.+...... ...+..|. .+...+|+ |||+
T Consensus 217 ~~~~~~dg~~~l~~~~~~g~~----------------~~~l~~~~-~~~~~~~S---------pDG~------------- 257 (1045)
T 1k32_A 217 YFITDIDGFGQIYSTDLDGKD----------------LRKHTSFT-DYYPRHLN---------TDGR------------- 257 (1045)
T ss_dssp EEEECTTSSCEEEEEETTSCS----------------CEECCCCC-SSCEEEEE---------ESSS-------------
T ss_pred EEEEeccCceEEEEEeCCCCc----------------ceEecCCC-CcceeeEc---------CCCC-------------
Confidence 667777888888877642100 22233333 35566777 8886
Q ss_pred cccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCC----CccceeeeeccccC-CCeEEEEE-eCCeeEEeec
Q 007489 173 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP----QRVPIHLVHNTIFS-HTSLLLVQ-YSCRLDILSV 246 (601)
Q Consensus 173 ~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~l~~-~~~~i~i~~~ 246 (601)
.|+.+ .++.|++|++... .+......... ...+...+..++|+ |+|..++. ..+.+.+|++
T Consensus 258 -----------~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~ 324 (1045)
T 1k32_A 258 -----------RILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDV 324 (1045)
T ss_dssp -----------CEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECT
T ss_pred -----------EEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcC
Confidence 67666 5889999998432 11111100000 00112246788899 99985554 4577888876
Q ss_pred cccCCcccCCCCCCCCCcceEEEEEecCCC-CeEEEEEcCCCCEEEE-EcCCccE-EEEeecCCCCcceEEEeeecCCcC
Q 007489 247 RLENNVESRSSSGGHASTSLLVQVKSKASR-KIICSTISNSGMLFAY-SDHVKPS-LFELKKGKVGQGEWIINKRQLPRK 323 (601)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~-~~~~~v~-l~~~~~~~~~~~~~~~~~~~~~~~ 323 (601)
.... ...+ ..+.. .+..++|+ ||+.|++ +.+..+. +|++.. +. . ..+..+
T Consensus 325 ~~~~----------------~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~---~~-~-----~~l~~~ 377 (1045)
T 1k32_A 325 SGTY----------------VLKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT---GK-A-----EKFEEN 377 (1045)
T ss_dssp TSSB----------------EEEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---CC-E-----EECCCC
T ss_pred CCCc----------------eEEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---CC-c-----eEecCC
Confidence 5332 1122 22334 78899999 9998888 4544555 556543 22 1 223356
Q ss_pred ccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC----
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---- 399 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg---- 399 (601)
...+..++|+|||++|++++.++.|++||+.+++....+.. |...+..++|||||++|++++.++
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-----------~~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-----------REAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----------SSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-----------CCCCccceEECCCCCeEEEEecCccccc
Confidence 67889999999999999999999999999999988777766 788899999999999999887654
Q ss_pred ------eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 400 ------DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 400 ------~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.|++||+.+++. ..+.. +...+.+++|+| ++++|++++.++...+|+...
T Consensus 447 ~~~~~~~i~l~d~~~g~~-~~l~~-~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRKI-FAATT-ENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CSCCEEEEEEEETTTTEE-EECSC-SSSBEEEEEECT-TSCEEEEEESCCCCCEECSSS
T ss_pred cCCCCCeEEEEECCCCcE-EEeeC-CCcccCCceEcC-CCCEEEEEecccCCcCcchhc
Confidence 899999999874 34433 445788999999 999999999888877787543
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.1e-24 Score=232.03 Aligned_cols=349 Identities=10% Similarity=0.057 Sum_probs=214.9
Q ss_pred EEeeecCCcEEEEECCCCceE-EEEEeccCC---------CCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchh
Q 007489 2 LYSGSSDGYIRSWDAKLGYEI-YRITVGLGG---------LGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL 71 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~~---------~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~ 71 (601)
+++++.|+ | +||+.+|+.+ ..+...... ....+...|.+++|+||+.++.+ .++.|++||+.+++..
T Consensus 38 ~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~ 114 (706)
T 2z3z_A 38 YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVT 114 (706)
T ss_dssp EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEE
T ss_pred EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCCceE
Confidence 46667777 8 9999999884 444311000 00001146999999999844444 3599999999987654
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc-----CcCCCCCCCCCccccceeEEecCccccc---------
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC-----ESIGPNDGLSSSEVIKKWIYVGSVRAHT--------- 137 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------- 137 (601)
. +..+...+.+++|+|||++|+++ .|+.|++|++.+ ++. ......+.
T Consensus 115 ~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~-----------------~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 115 Y-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA-----------------IAVTIDGTETLVYGQAV 175 (706)
T ss_dssp E-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC-----------------EESCSCCBTTEEESSCC
T ss_pred E-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc-----------------EEeccCCCCCeEcccch
Confidence 3 44567789999999999999985 789999999988 653 11111122
Q ss_pred -----cceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC-eEEEEeccccCCcCCCccC
Q 007489 138 -----HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEIC 211 (601)
Q Consensus 138 -----~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~~~~~~~~~~~~~~~~~ 211 (601)
..+.+++|+ |||+ .|++++.|. .+..+.........
T Consensus 176 ~~ee~~~~~~~~~S---------pDg~------------------------~la~~~~d~~~~~~~~~~~~~~~~----- 217 (706)
T 2z3z_A 176 HQREFGIEKGTFWS---------PKGS------------------------CLAFYRMDQSMVKPTPIVDYHPLE----- 217 (706)
T ss_dssp GGGCTTCCCSEEEC---------TTSS------------------------EEEEEEEECTTSCCEEEEECCSSS-----
T ss_pred hhhhcCCCceEEEC---------CCCC------------------------EEEEEEECCCCCceEEeeccCCCC-----
Confidence 235788888 8887 777776332 22222211100000
Q ss_pred CCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE--ecCCCCeEEEEEcCCCCE
Q 007489 212 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK--SKASRKIICSTISNSGML 289 (601)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~ 289 (601)
.......+...+. ......+.+|++.... ...+. ..+...+.+++|+|||+.
T Consensus 218 --------~~~~~~~y~~~g~--~~~~~~l~~~d~~~~~----------------~~~~~~~~~~~~~~~~~~~spdg~~ 271 (706)
T 2z3z_A 218 --------AESKPLYYPMAGT--PSHHVTVGIYHLATGK----------------TVYLQTGEPKEKFLTNLSWSPDENI 271 (706)
T ss_dssp --------CEEEEECCCBTTS--CCCEEEEEEEETTTTE----------------EEECCCCSCTTCEEEEEEECTTSSE
T ss_pred --------CceEEeeCCCCCC--CCCeeEEEEEECCCCc----------------eEeeccCCCCceeEeeEEEECCCCE
Confidence 0000011110000 0011456667665332 11111 123466899999999998
Q ss_pred EEE-EcCC-----ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc--CCCeEEEEecCCcEEEEEcC-CCceee
Q 007489 290 FAY-SDHV-----KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--DSSQLIIAGHDRRIYVVDVS-SSELLH 360 (601)
Q Consensus 290 l~~-~~~~-----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--d~~~l~~~~~dg~i~vwd~~-~~~~~~ 360 (601)
|++ +.+. .|++|++.. +...-.+...........+..++|+| ||+++++++.++.++||.+. +++.+.
T Consensus 272 l~~~~~~~~~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~ 348 (706)
T 2z3z_A 272 LYVAEVNRAQNECKVNAYDAET---GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR 348 (706)
T ss_dssp EEEEEECTTSCEEEEEEEETTT---CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred EEEEEeCCCCCeeEEEEEECCC---CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence 888 4444 788888765 31211111111111122346789999 99999999999999999875 566667
Q ss_pred eeccCcccccccCCCCCCCeeE-EEEccCCCEEEEEec-CC----eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCC
Q 007489 361 TFTPCREEHDREIQPSEPPITK-MFTSSDGQWLAAVNC-FG----DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~-l~~spd~~~las~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
.+.. +...+.. ++|+||++.|+.++. ++ .|+.||+.+++.. .+. +...+.+++|+| +++
T Consensus 349 ~l~~-----------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--~~~~~~~~~~sp-dg~ 413 (706)
T 2z3z_A 349 QVTK-----------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT--PESGMHRTQLSP-DGS 413 (706)
T ss_dssp ECCC-----------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC--CSSSEEEEEECT-TSS
T ss_pred ecCC-----------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc--CCCceEEEEECC-CCC
Confidence 7765 6667776 899999998876554 43 6777788777643 333 345789999999 999
Q ss_pred EEEEEeCC----CeEEEEEcCCCC
Q 007489 435 VLIITTSS----NQVYVFDVEAKQ 454 (601)
Q Consensus 435 ~l~~~~~d----g~v~vwd~~~~~ 454 (601)
+|+.++.+ +.|++||+.+++
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 88877544 569999998876
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.3e-24 Score=230.96 Aligned_cols=338 Identities=10% Similarity=0.055 Sum_probs=223.5
Q ss_pred ceEEEEEEEeeCC-eEEEEcC-CC-----cEEEeeCCccchhhhccccc------------------------cceEEEE
Q 007489 37 ELCIWSLLSLRCG-TLVSADS-TG-----SVQFWDSRHGTLLQAHSFHK------------------------GDVNALA 85 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~h~------------------------~~V~~l~ 85 (601)
...|.+++||||| +|++++. |+ .|++||+.+++....+..+. ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4569999999999 8998887 88 89999999988766555443 3488999
Q ss_pred EeCCCCEEEEEeeCCeEEEEEeccC---cCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccc
Q 007489 86 AAPSHNRVFSTGSDGQVILYKASCE---SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 162 (601)
Q Consensus 86 ~s~~~~~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~ 162 (601)
|||||++|++++. +.|.+||+.++ . ...+..|...+..++|+ |||+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~------------------~~~l~~~~~~~~~~~~S---------PDG~--- 164 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA------------------VRQLTHGEGFATDAKLS---------PKGG--- 164 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS------------------CCBCCCSSSCEEEEEEC---------TTSS---
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce------------------EEEcccCCcccccccCC---------CCCC---
Confidence 9999999998885 99999999987 4 34566777889999998 9997
Q ss_pred cCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeE
Q 007489 163 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 242 (601)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~ 242 (601)
.|+.++ ++.|++||+.+........ .....+ ..+ +.
T Consensus 165 ---------------------~la~~~-~~~i~~~d~~~g~~~~~~~------------------~~~~~~-~~g---~~ 200 (741)
T 2ecf_A 165 ---------------------FVSFIR-GRNLWVIDLASGRQMQLTA------------------DGSTTI-GNG---IA 200 (741)
T ss_dssp ---------------------EEEEEE-TTEEEEEETTTTEEEECCC------------------CCCSSE-EES---CC
T ss_pred ---------------------EEEEEe-CCcEEEEecCCCCEEEecc------------------CCccce-ecc---cc
Confidence 787776 4589999987522110000 000000 000 00
Q ss_pred EeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCC-------------------------
Q 007489 243 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV------------------------- 296 (601)
Q Consensus 243 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~------------------------- 296 (601)
-|... .....+.+++|||||++|++ +.++
T Consensus 201 ~~v~~-------------------------~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 201 EFVAD-------------------------EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp CHHHH-------------------------HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ceeee-------------------------eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 00000 00123567899999998888 4433
Q ss_pred --------ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-----CCcEEEEEcCCCceeeeec
Q 007489 297 --------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-----DRRIYVVDVSSSELLHTFT 363 (601)
Q Consensus 297 --------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~ 363 (601)
.|++|++.. .+... .+ .....+...+..++| |||++|++++. +..|++||+.+++....+.
T Consensus 256 ~g~~~~~~~l~~~d~~~--~~~~~-~~--~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAE--QAQTQ-WI--DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp TTSCCCEEEEEEECSST--TCCCE-EE--CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCeeEEEEEECCC--CCceE-Ee--cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 455555542 01111 11 111245678899999 99999987764 4679999999988776665
Q ss_pred cCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCceeEE-EecCCCCCEEEEEe-
Q 007489 364 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTAA-GFPPQNNNVLIITT- 440 (601)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l-~~~p~~~~~l~~~~- 440 (601)
.+.. .....+..++|+|||+++++++.||.++||.++ .++ ...+.. +...+..+ .|+| +++.|++.+
T Consensus 330 ~~~~-------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-~~~~v~~~~~~s~-dg~~l~~~~~ 399 (741)
T 2ecf_A 330 ETSP-------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH-GNWSVDELLAVDE-KAGLAYFRAG 399 (741)
T ss_dssp EECS-------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC-SSSCEEEEEEEET-TTTEEEEEEC
T ss_pred cCCC-------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee-cceEEEeEeEEeC-CCCEEEEEEe
Confidence 4210 011145689999999999999999988888765 333 444443 33567777 5999 988776554
Q ss_pred CCC--eEEEEEcCC-CCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcC-----ceEEEEeC
Q 007489 441 SSN--QVYVFDVEA-KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA-----RAMCVIDF 504 (601)
Q Consensus 441 ~dg--~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~-----~~~~~~~~ 504 (601)
.++ .+++|++.. +.. +..+.. ...+..++|+|+ +..+.+... ..+++++.
T Consensus 400 ~~~~~~~~l~~~~~~g~~-----------~~~l~~-~~~~~~~~~spd--g~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 400 IESARESQIYAVPLQGGQ-----------PQRLSK-APGMHSASFARN--ASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SSCTTCBEEEEEETTCCC-----------CEECCC-SCSEEEEEECTT--SSEEEEEEEETTEEEEEEEEET
T ss_pred CCCCceEEEEEEEcCCCC-----------eeeccc-CCCceEEEECCC--CCEEEEEecCCCCCCeEEEEEc
Confidence 455 899999864 321 223333 456889999999 444444321 24556665
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.4e-23 Score=201.58 Aligned_cols=281 Identities=12% Similarity=0.150 Sum_probs=197.4
Q ss_pred EEeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCC
Q 007489 44 LSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 44 ~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
.|.+++ .+++.+.++.|.+||..+++.+..+..+...+ +++|+|+|+++++++. ++.|.+||+.++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------
Confidence 455555 57888899999999999999888877767777 9999999997776665 88999999988762
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC---eEEEE
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT---KLFAY 197 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~v~~~ 197 (601)
....+..+.....+++|+ |+++ .++++..++ .|.+|
T Consensus 75 --------~~~~~~~~~~~~~~~~~s---------~dg~------------------------~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 75 --------KVVAIQEGQSSMADVDIT---------PDDQ------------------------FAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp --------EEEEEEECSSCCCCEEEC---------TTSS------------------------EEEECCCSSSSCEEEEE
T ss_pred --------eEEecccCCCCccceEEC---------CCCC------------------------EEEEecCCCCcccEEEE
Confidence 022333444444448887 8887 777555553 89999
Q ss_pred eccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 198 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
|+.+.+ .+..+. ....
T Consensus 114 d~~~~~--------------------------------------------------------------~~~~~~--~~~~ 129 (331)
T 3u4y_A 114 SFLKNK--------------------------------------------------------------FISTIP--IPYD 129 (331)
T ss_dssp ETTTTE--------------------------------------------------------------EEEEEE--CCTT
T ss_pred ECCCCC--------------------------------------------------------------eEEEEE--CCCC
Confidence 986521 111111 1245
Q ss_pred eEEEEEcCCCCEEEE--EcCCc-cEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEc
Q 007489 278 IICSTISNSGMLFAY--SDHVK-PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDV 353 (601)
Q Consensus 278 i~~~~~s~~g~~l~~--~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~ 353 (601)
..+++|+|+|+++++ ..++. +.+|++.. ...+.+.....+ ........++|+|||+++++++ .++.|.+||+
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~---~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDA---DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECT---TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECC---CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 689999999986555 35577 99999985 222222221212 2234578999999999766555 5889999999
Q ss_pred CCCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceE--EEEeecc---CC---C
Q 007489 354 SSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ--HWFISRL---EG---A 421 (601)
Q Consensus 354 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~--~~~~~~~---~~---~ 421 (601)
.+++. +..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. ...+... +. .
T Consensus 206 ~~~~~~~~~~~~~~------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 206 QNPENITLLNAVGT------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp SSTTSCEEEEEEEC------------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred CCCcccceeeeccC------------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence 98887 666663 45678899999999877665 578899999998876 2222211 11 1
Q ss_pred ceeEEEecCCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 007489 422 SVTAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQL 455 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~-dg~v~vwd~~~~~~ 455 (601)
....++|+| ++++|++++. ++.|.+||+.....
T Consensus 274 ~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 274 GANQMALNK-TETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp TCCCEEECT-TSSEEEEEETTTTEEEEEETTSCEE
T ss_pred cccceEECC-CCCEEEEecCCCCcEEEEEecCCcc
Confidence 235689999 9998876665 56999999987653
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=8.7e-24 Score=204.25 Aligned_cols=299 Identities=10% Similarity=0.060 Sum_probs=197.5
Q ss_pred EEeeecCCcEEEEECC-CCc--eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC-CcEEEeeCC--ccc--hhh
Q 007489 2 LYSGSSDGYIRSWDAK-LGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST-GSVQFWDSR--HGT--LLQ 72 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~-~~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d-g~i~vwd~~--~~~--~~~ 72 (601)
+++++.|+.|++||+. +++ .+..+ .|...+.+++|+|+| +|++++.+ +.|.+|++. +++ .+.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 78 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV---------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 78 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE---------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE---------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc
Confidence 4555789999999985 343 23333 366778899999999 77777765 999999997 554 334
Q ss_pred hccccccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccC
Q 007489 73 AHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 73 ~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 151 (601)
.+..+. .+.+++|+|++++|++++. ++.|.+|++..+.. ......+. ....+.+++|+
T Consensus 79 ~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------~~~~~~~~-~~~~~~~~~~s----- 137 (343)
T 1ri6_A 79 ESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP--------------VGVVDVVE-GLDGCHSANIS----- 137 (343)
T ss_dssp EEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE--------------EEEEEEEC-CCTTBCCCEEC-----
T ss_pred ccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc--------------cccccccc-CCCCceEEEEC-----
Confidence 444444 7899999999998876664 88999999952210 01122222 23357788887
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEec-CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCC
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
|+++ .+++++ .++.|.+|++.+.....
T Consensus 138 ----~dg~------------------------~l~~~~~~~~~v~~~d~~~~~~~~------------------------ 165 (343)
T 1ri6_A 138 ----PDNR------------------------TLWVPALKQDRICLFTVSDDGHLV------------------------ 165 (343)
T ss_dssp ----TTSS------------------------EEEEEEGGGTEEEEEEECTTSCEE------------------------
T ss_pred ----CCCC------------------------EEEEecCCCCEEEEEEecCCCcee------------------------
Confidence 8876 666665 88899999986411000
Q ss_pred eEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE--EEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecC
Q 007489 231 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV--QVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKG 306 (601)
Q Consensus 231 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~ 306 (601)
.+. .........+.+++|+|+++++++ + .++.+.+|++...
T Consensus 166 -----------------------------------~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~ 210 (343)
T 1ri6_A 166 -----------------------------------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 210 (343)
T ss_dssp -----------------------------------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred -----------------------------------eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 000 111122346788999999997765 4 6889999999641
Q ss_pred CCCcceEEEeeecCCcC---ccceeEEEEccCCCeEEEEe-cCCcEEEEEcC--C--CceeeeeccCcccccccCCCCCC
Q 007489 307 KVGQGEWIINKRQLPRK---LQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVS--S--SELLHTFTPCREEHDREIQPSEP 378 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~---~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 378 (601)
.......... ..++.. ...+..++|+|++++|+++. .++.|.+||+. + .+.+..+.. +.
T Consensus 211 ~g~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----------~~- 277 (343)
T 1ri6_A 211 HGNIECVQTL-DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-----------ET- 277 (343)
T ss_dssp TSCCEEEEEE-ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-----------SS-
T ss_pred CCcEEEEeec-cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-----------CC-
Confidence 1111111111 112221 23567899999999887555 68999999997 2 234444443 33
Q ss_pred CeeEEEEccCCCEEEEEe-cCCeEEEEEcC--CceEE--EEeeccCCCceeEEEecCCCC
Q 007489 379 PITKMFTSSDGQWLAAVN-CFGDVYIFNLE--IQRQH--WFISRLEGASVTAAGFPPQNN 433 (601)
Q Consensus 379 ~i~~l~~spd~~~las~~-~dg~i~iwd~~--~~~~~--~~~~~~~~~~v~~l~~~p~~~ 433 (601)
.+..++|+|+|++|++++ .++.|.+|+++ +++.. ..++. +..+.+++|.| +.
T Consensus 278 ~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~-~~ 334 (343)
T 1ri6_A 278 QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNA-HE 334 (343)
T ss_dssp SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEE-EC
T ss_pred ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--CCCCeeEEEEc-cc
Confidence 388999999999998887 68999999554 55433 22332 34677888887 44
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.2e-24 Score=233.11 Aligned_cols=344 Identities=12% Similarity=0.072 Sum_probs=223.6
Q ss_pred CEEeeec-CC-----cEEEEECCCCceEEEEEeccCCCCCCCc----------------------eEEEEEEEeeCC-eE
Q 007489 1 MLYSGSS-DG-----YIRSWDAKLGYEIYRITVGLGGLGSGPE----------------------LCIWSLLSLRCG-TL 51 (601)
Q Consensus 1 ~l~tg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~h~----------------------~~V~~v~~s~~g-~l 51 (601)
+|++++. |+ .|++||+.+++....+... .+. ..|.+++||||| +|
T Consensus 50 ~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l 123 (741)
T 2ecf_A 50 RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK------VVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRL 123 (741)
T ss_dssp EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG------GTC--------------------CCEESCCCEECTTSSEE
T ss_pred EEEEEeccCCCCcccEEEEEECCCCceeEccchh------hcccccccccchhhhhhhhhhhccccCcceeEECCCCCEE
Confidence 3788887 88 9999999999887666521 111 458899999999 77
Q ss_pred EEEcCCCcEEEeeCCccc--hhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEE
Q 007489 52 VSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 129 (601)
Q Consensus 52 ~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 129 (601)
++++. +.|++||+.+++ .+..+..|...+.+++|+|||++|++++ ++.|.+|++.++..
T Consensus 124 ~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~----------------- 184 (741)
T 2ecf_A 124 LFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ----------------- 184 (741)
T ss_dssp EEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-----------------
T ss_pred EEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-----------------
Confidence 77776 999999999873 4556777888999999999999999887 56999999988653
Q ss_pred ecCcccccc----------------ceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC-
Q 007489 130 VGSVRAHTH----------------DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT- 192 (601)
Q Consensus 130 ~~~~~~h~~----------------~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~- 192 (601)
......+.. .+.+++|+ |||+ .|++++.|+
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S---------pDg~------------------------~l~~~~~d~~ 231 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA---------PDDS------------------------AIAYARIDES 231 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC---------TTSS------------------------CEEEEEEECT
T ss_pred EEeccCCccceeccccceeeeeccccccceEEC---------CCCC------------------------EEEEEEEcCC
Confidence 111111221 24678888 8987 777766554
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC--eeEEeeccc-cCCcccCCCCCCCCCcceEEE
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRL-ENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (601)
.+..|+... . .+.. .....+.+...+. ... .+.+|++.. .. ...
T Consensus 232 ~~~~~~~~~---~-------~p~~---~~~~~~~~~~~g~----~~~~~~l~~~d~~~~~~----------------~~~ 278 (741)
T 2ecf_A 232 PVPVQKRYE---V-------YADR---TDVIEQRYPAAGD----ANVQVKLGVISPAEQAQ----------------TQW 278 (741)
T ss_dssp TSCEEEEEE---E-------CSSC---EEEEEEECCBTTS----CCCEEEEEEECSSTTCC----------------CEE
T ss_pred CCceEecCC---C-------CCCc---ccceEeecCCCCC----CCCeeEEEEEECCCCCc----------------eEE
Confidence 333333110 0 0000 0111111211110 012 444555543 22 111
Q ss_pred EEe--cCCCCeEEEEEcCCCCEEEE-Ec-----CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEE
Q 007489 270 VKS--KASRKIICSTISNSGMLFAY-SD-----HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 270 ~~~--~~~~~i~~~~~s~~g~~l~~-~~-----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~ 341 (601)
+.. .+...+..++| |||++|++ +. +..|++||+.. +.... +...........+..++|+|||+++++
T Consensus 279 ~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---g~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 279 IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---NQQRV-LAHETSPTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---CCEEE-EEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---CceEE-EEEcCCCCcCCcCCceEECCCCeEEEE
Confidence 211 24567899999 99999987 32 35677888765 32221 111111111114567899999999999
Q ss_pred EecCCcEEEEEcC-CCceeeeeccCcccccccCCCCCCCeeEE-EEccCCCEEEEE-ecCC--eEEEEEcCC-ceEEEEe
Q 007489 342 AGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKM-FTSSDGQWLAAV-NCFG--DVYIFNLEI-QRQHWFI 415 (601)
Q Consensus 342 ~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~spd~~~las~-~~dg--~i~iwd~~~-~~~~~~~ 415 (601)
++.+|.++||.+. +++ ...+.. +...+..+ .||||+++|+.. +.++ .++||++.. +.....+
T Consensus 354 ~~~~g~~~l~~~~~~~~-~~~l~~-----------~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 354 SERTGFQHLYRIDSKGK-AAALTH-----------GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp ECTTSSCEEEEECSSSC-EEESCC-----------SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred ecCCCccEEEEEcCCCC-eeeeee-----------cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 9999988888764 344 566665 66778887 599999987654 4455 899999864 4433344
Q ss_pred eccCCCceeEEEecCCCCCEEEEEeCC----CeEEEEEcCCCCc
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITTSS----NQVYVFDVEAKQL 455 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~~d----g~v~vwd~~~~~~ 455 (601)
.. ...+.+++|+| |+++|+....+ ..+++|+..++..
T Consensus 422 ~~--~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~~~ 462 (741)
T 2ecf_A 422 SK--APGMHSASFAR-NASVYVDSWSNNSTPPQIELFRANGEKI 462 (741)
T ss_dssp CC--SCSEEEEEECT-TSSEEEEEEEETTEEEEEEEEETTSCEE
T ss_pred cc--CCCceEEEECC-CCCEEEEEecCCCCCCeEEEEEcCCCeE
Confidence 43 34688999999 99988877544 5799999876543
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=6.8e-25 Score=234.41 Aligned_cols=334 Identities=10% Similarity=0.042 Sum_probs=216.6
Q ss_pred eecCCcEEEEECCCCceEEEEEeccCCCCCCCce---EEEEEEEeeCC-eEEEEcCC---------CcEEEeeCCccch-
Q 007489 5 GSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL---CIWSLLSLRCG-TLVSADST---------GSVQFWDSRHGTL- 70 (601)
Q Consensus 5 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~~g-~l~s~~~d---------g~i~vwd~~~~~~- 70 (601)
.+.||+|++||+.+++....+. +|.. .|.+++||||| +|++++.+ +.|.+||+.+++.
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~~~--------~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 104 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVLIE--------GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ 104 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEEEC--------TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred EeCCCCEEEEECCCCcEEEEec--------cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence 3789999999999999877775 4543 48999999999 78888654 7888999998875
Q ss_pred -hhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc-----------
Q 007489 71 -LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH----------- 138 (601)
Q Consensus 71 -~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------- 138 (601)
+....+|...+.+++|||||++|++++. +.|++|++.++.. ......+..
T Consensus 105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-----------------~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-----------------IRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-----------------EEEECCCBTTTEEEEECCHH
T ss_pred eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-----------------EEEecCCCCCceECccccee
Confidence 3333456666899999999999998875 7999999988763 111122222
Q ss_pred -------ceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC-eEEEEeccccCCcCCCcc
Q 007489 139 -------DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEI 210 (601)
Q Consensus 139 -------~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~~~~~~~~~~~~~~~~ 210 (601)
.+.+++|+ |||+ .|++++.|+ .+.+|++.....
T Consensus 167 ~~ee~~~~~~~~~~S---------pDg~------------------------~la~~~~~~~~~~~~~~~~~~~------ 207 (723)
T 1xfd_A 167 YEEEILKTHIAHWWS---------PDGT------------------------RLAYAAINDSRVPIMELPTYTG------ 207 (723)
T ss_dssp HHHTTSSSSEEEEEC---------TTSS------------------------EEEEEEEECTTSCEEEECCCSS------
T ss_pred EEEEeccCcceEEEC---------CCCC------------------------EEEEEEECCCccceEEeeccCC------
Confidence 23678888 8887 777766543 444554432100
Q ss_pred CCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 007489 211 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 290 (601)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 290 (601)
. ....+..+.++++|..
T Consensus 208 -----------------------------------------~---------------------~~~~~~~~~~~~~G~~- 224 (723)
T 1xfd_A 208 -----------------------------------------S---------------------IYPTVKPYHYPKAGSE- 224 (723)
T ss_dssp -----------------------------------------S---------------------SSCCCEEEECCBTTSC-
T ss_pred -----------------------------------------c---------------------CCCcceeccCCCCCCC-
Confidence 0 0122455566666642
Q ss_pred EEEcCCccEEEEeecCCCCcceEEEee-ecCCcCccceeEEEEccCCCeEEEEecC----CcEEEEEcCCCceeeeeccC
Q 007489 291 AYSDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHD----RRIYVVDVSSSELLHTFTPC 365 (601)
Q Consensus 291 ~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~d~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~ 365 (601)
..+..+++|++.. +.....+.. .....+...+..++|||||++|++.... ..|++||+.+++....+...
T Consensus 225 --~~~~~l~~~d~~~---~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 225 --NPSISLHVIGLNG---PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp --CCEEEEEEEESSS---SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred --CCeeEEEEEECCC---CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 2234678888865 222111110 0111235578999999999988776543 57999999988876655431
Q ss_pred cccccccCCCCCCCe----eEEEEccCCCEEEE--EecCC------eEEEEE-cCCceE--EEEeeccCCCceeE-EEec
Q 007489 366 REEHDREIQPSEPPI----TKMFTSSDGQWLAA--VNCFG------DVYIFN-LEIQRQ--HWFISRLEGASVTA-AGFP 429 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i----~~l~~spd~~~las--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~v~~-l~~~ 429 (601)
+...+ ..++|||||++|+. +..++ .|++|| ..++.. ...+...+ ..+.. ++|+
T Consensus 300 ----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~s 368 (723)
T 1xfd_A 300 ----------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYD 368 (723)
T ss_dssp ----------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEE
T ss_pred ----------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEc
Confidence 23333 37899999997775 45666 577777 444440 22333222 34444 6999
Q ss_pred CCCCCEEEEEeCC---CeEEEEEcCCCCcccchhcccCCcCccccc---CCCcEEEEEeCCCCCCCEEEEE
Q 007489 430 PQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQE---FPGEVIGLSFSPSPSSSSVIIY 494 (601)
Q Consensus 430 p~~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~~~~~~~ 494 (601)
| +++.|+..+.+ +.+++|++....... ...+.. |...+..++|+|+ +..+++.
T Consensus 369 p-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~spd--g~~l~~~ 427 (723)
T 1xfd_A 369 E-KGNKIYFLSTEDLPRRRQLYSANTVGNFN---------RQCLSCDLVENCTYFSASFSHS--MDFFLLK 427 (723)
T ss_dssp T-TTTEEEEEESSSCTTCCEEEEECSSTTCC---------CBCSSTTSSSSCCCCEEEECTT--SSEEEEE
T ss_pred C-CCCEEEEEEcCCCCcceEEEEEeCCCCCC---------cceecccccCCCCeEEEEECCC--CCEEEEE
Confidence 9 99998876655 789999987532100 111222 5667889999998 4555543
No 138
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=207.37 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=180.7
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCC---cEEEeeCCccchhhhccccccceEEE
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNAL 84 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg---~i~vwd~~~~~~~~~~~~h~~~V~~l 84 (601)
+.|++||+. +..+..+. +|...|.+++|+||| +|++++.++ .|++||+.+++.. .+..|...+.++
T Consensus 159 ~~i~i~d~~-g~~~~~l~--------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~ 228 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVH--------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAP 228 (415)
T ss_dssp EEEEEEETT-SCSCEEEE--------EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEE
T ss_pred ceEEEEcCC-CCCCEEEe--------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCE
Confidence 799999997 55567777 688899999999999 899888775 9999999988765 566788899999
Q ss_pred EEeCCCCEEE-EEeeCCe--EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 85 AAAPSHNRVF-STGSDGQ--VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 85 ~~s~~~~~l~-s~~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
+|+|||++|+ +++.|+. |.+||+.+++ ...+..|...+.+++|+ |||+
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~------------------~~~l~~~~~~~~~~~~s---------pdg~-- 279 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQ------------------IRQVTDGRSNNTEPTWF---------PDSQ-- 279 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCC------------------EEECCCCSSCEEEEEEC---------TTSS--
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCC------------------EEeCcCCCCcccceEEC---------CCCC--
Confidence 9999999888 6666654 9999998876 34566778889999998 9987
Q ss_pred ccCCCCccccccccccccCCCCEEEEecC-CC--eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGD-DT--KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
.|++++. ++ .|++||+.+....
T Consensus 280 ----------------------~l~~~s~~~g~~~i~~~d~~~~~~~--------------------------------- 304 (415)
T 2hqs_A 280 ----------------------NLAFTSDQAGRPQVYKVNINGGAPQ--------------------------------- 304 (415)
T ss_dssp ----------------------EEEEEECTTSSCEEEEEETTSSCCE---------------------------------
T ss_pred ----------------------EEEEEECCCCCcEEEEEECCCCCEE---------------------------------
Confidence 7776665 44 6777787652100
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcC---CccEEEEeecCCCCcceEE
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDH---VKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~---~~v~l~~~~~~~~~~~~~~ 314 (601)
.+ ..+...+.+++|+|+|++|++ +.+ ..|++|++.. +..
T Consensus 305 ------------------------------~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---~~~--- 347 (415)
T 2hqs_A 305 ------------------------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGV--- 347 (415)
T ss_dssp ------------------------------EC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCE---
T ss_pred ------------------------------EE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC---CCE---
Confidence 00 011245778999999999988 432 4788888865 222
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCC---cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR---RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
..+..+. .+.+++|+|||++|++++.++ .|++||+. ++....+.. |...|.+++|||...
T Consensus 348 ---~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~-----------~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 348 ---QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA-----------TDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC-----------SSSEEEEEEECCCCC
T ss_pred ---EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC-----------CCCCCcCCccccccc
Confidence 1233333 789999999999999988877 79999987 556677776 889999999999654
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2e-23 Score=197.04 Aligned_cols=254 Identities=11% Similarity=0.019 Sum_probs=185.8
Q ss_pred eeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCc-cchhhhcccc-ccc
Q 007489 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFH-KGD 80 (601)
Q Consensus 4 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h-~~~ 80 (601)
+++.|++|++||+.+++..... .|...|.+++|+|+| +|++++ ++.|++||+.+ ++.......| ...
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~---------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW---------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE---------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCCcceeEEEEeCCCCceeeec---------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 4567899999999988876444 478889999999999 777765 88999999998 8777666665 478
Q ss_pred eEEEEEeCCCCEEEEEe--eCCeEEEEEec--cCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 81 VNALAAAPSHNRVFSTG--SDGQVILYKAS--CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~--~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
|.+++|+|++++|++++ .++.+.+|.++ ++. ...+..+ ..+..++|+ |
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~-~~~~~~~~s---------p 138 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT------------------PRLMTKN-LPSYWHGWS---------P 138 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC------------------CEECCSS-SSEEEEEEC---------T
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc------------------eEEeecC-CCccceEEC---------C
Confidence 89999999999999988 44566666654 332 1222222 347788888 8
Q ss_pred cccccccCCCCccccccccccccCCCCEEE-EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLI-SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
+++ .|+ +++.++.+.+|++.....
T Consensus 139 dg~------------------------~l~~~~~~~~~~~l~~~~~~~~------------------------------- 163 (297)
T 2ojh_A 139 DGK------------------------SFTYCGIRDQVFDIYSMDIDSG------------------------------- 163 (297)
T ss_dssp TSS------------------------EEEEEEEETTEEEEEEEETTTC-------------------------------
T ss_pred CCC------------------------EEEEEECCCCceEEEEEECCCC-------------------------------
Confidence 886 555 788888888887642110
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~ 313 (601)
.. .....+...+.+++|+|+|++|++ + .++.+++|++... +..+
T Consensus 164 ------------------------------~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--~~~~- 209 (297)
T 2ojh_A 164 ------------------------------VE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--GSSV- 209 (297)
T ss_dssp ------------------------------CE-EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCE-
T ss_pred ------------------------------cc-eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--CCCc-
Confidence 00 001122356889999999998887 4 5889999999841 2222
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEecC-----------CcEEEEEcCCCceee--eeccCcccccccCCCCCCCe
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-----------RRIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPI 380 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-----------g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i 380 (601)
..+..+...+..++|+|++++|++++.+ +.|++||+.+++... .+.. |...+
T Consensus 210 ----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----------~~~~~ 274 (297)
T 2ojh_A 210 ----ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG-----------GQGTM 274 (297)
T ss_dssp ----EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE-----------STTTS
T ss_pred ----EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC-----------CCccc
Confidence 3345556688999999999999988876 569999998776533 3334 67789
Q ss_pred eEEEEccCCCEEEEEecCC
Q 007489 381 TKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 381 ~~l~~spd~~~las~~~dg 399 (601)
..++|+|++++|++++.+.
T Consensus 275 ~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 275 NSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSCCBCTTSSEEEEEEECC
T ss_pred ccceECCCCCEEEEEEecc
Confidence 9999999999998887653
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.2e-22 Score=195.24 Aligned_cols=283 Identities=8% Similarity=0.028 Sum_probs=194.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc-CCCcEEEeeCCccch-hhhccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSRHGTL-LQAHSFHK 78 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~-~dg~i~vwd~~~~~~-~~~~~~h~ 78 (601)
+++++.++.|++||+.+++.+..+. .+...+ +++|+|+| .+++++ .++.|.+||+.+++. ...+..+.
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQIT--------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEE--------CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EEEecCCCeEEEEeCcccceeeeEE--------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 6788899999999999999998887 445556 99999999 565554 589999999999988 77777777
Q ss_pred cceEEEEEeCCCCEEEEEeeCC---eEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 79 GDVNALAAAPSHNRVFSTGSDG---QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
.+..+++|+|+|++|+++..++ .|.+||+.+++. ...+. +.....+++|+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-----------------~~~~~-~~~~~~~~~~s--------- 136 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-----------------ISTIP-IPYDAVGIAIS--------- 136 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-----------------EEEEE-CCTTEEEEEEC---------
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-----------------EEEEE-CCCCccceEEC---------
Confidence 6666699999999999555553 899999988763 22222 23456889998
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCe-EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK-LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
|||+ .++++...++. |.+|++..... +.
T Consensus 137 pdg~-----------------------~l~~~~~~~~~~i~~~~~~~~g~----------------------------~~ 165 (331)
T 3u4y_A 137 PNGN-----------------------GLILIDRSSANTVRRFKIDADGV----------------------------LF 165 (331)
T ss_dssp TTSS-----------------------CEEEEEETTTTEEEEEEECTTCC----------------------------EE
T ss_pred CCCC-----------------------EEEEEecCCCceEEEEEECCCCc----------------------------Ee
Confidence 8886 24455555577 99999874110 00
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcce
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~ 312 (601)
+ .. .........+..++|+|+|+++++ + .++.|++|++.. +...
T Consensus 166 ----------~--------------------~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---~~~~ 211 (331)
T 3u4y_A 166 ----------D--------------------TG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN---PENI 211 (331)
T ss_dssp ----------E--------------------EE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---TTSC
T ss_pred ----------e--------------------cC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC---Cccc
Confidence 0 00 000122355789999999997665 4 578899999875 3321
Q ss_pred EEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCC
Q 007489 313 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDG 389 (601)
Q Consensus 313 ~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~ 389 (601)
-.+ ..+. ....+..++|+|||++|++++. ++.|.+||+.+++. +..+........ ........++|+|||
T Consensus 212 ~~~--~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 212 TLL--NAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP----RPLFGANQMALNKTE 284 (331)
T ss_dssp EEE--EEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC----GGGTTCCCEEECTTS
T ss_pred cee--eecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC----CCcccccceEECCCC
Confidence 001 1111 1245678999999998776654 67899999998876 443332100000 011223568999999
Q ss_pred CEEEEEe-cCCeEEEEEcCCceEE
Q 007489 390 QWLAAVN-CFGDVYIFNLEIQRQH 412 (601)
Q Consensus 390 ~~las~~-~dg~i~iwd~~~~~~~ 412 (601)
++|++++ .++.|.+||+.+....
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEEE
T ss_pred CEEEEecCCCCcEEEEEecCCccc
Confidence 9887655 4679999999876643
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=3.2e-22 Score=193.19 Aligned_cols=303 Identities=11% Similarity=0.147 Sum_probs=196.6
Q ss_pred eEEEEcCCCcEEEeeCC-ccc--hhhhccccccceEEEEEeCCCCEEEEEeeC-CeEEEEEec--cCcCCCCCCCCCccc
Q 007489 50 TLVSADSTGSVQFWDSR-HGT--LLQAHSFHKGDVNALAAAPSHNRVFSTGSD-GQVILYKAS--CESIGPNDGLSSSEV 123 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~-~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~ 123 (601)
.+++++.++.|++||+. +++ .+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------
Confidence 34555889999999985 332 23333 477789999999999999988876 999999997 4331
Q ss_pred cceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec-CCCeEEEEecccc
Q 007489 124 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEF 202 (601)
Q Consensus 124 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~~~~~~ 202 (601)
.....+..+. .+..++|+ |+++ .|++++ .++.|.+|++...
T Consensus 75 ----~~~~~~~~~~-~~~~~~~s---------~dg~------------------------~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 75 ----TFAAESALPG-SLTHISTD---------HQGQ------------------------FVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp ----EEEEEEECSS-CCSEEEEC---------TTSS------------------------EEEEEETTTTEEEEEEEETT
T ss_pred ----eeccccccCC-CCcEEEEc---------CCCC------------------------EEEEEecCCCeEEEEECCCC
Confidence 1122333333 77889998 8886 665554 5789999997420
Q ss_pred CCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 007489 203 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 282 (601)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 282 (601)
.. .. .+.. ......+.+++
T Consensus 117 ~~--------------------------~~---------------------------------~~~~--~~~~~~~~~~~ 135 (343)
T 1ri6_A 117 LP--------------------------VG---------------------------------VVDV--VEGLDGCHSAN 135 (343)
T ss_dssp EE--------------------------EE---------------------------------EEEE--ECCCTTBCCCE
T ss_pred cc--------------------------cc---------------------------------cccc--ccCCCCceEEE
Confidence 00 00 0001 11224578899
Q ss_pred EcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEEe--eecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCC--
Q 007489 283 ISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIIN--KRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSS-- 355 (601)
Q Consensus 283 ~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~-- 355 (601)
|+|+|+++++ + .++.+++|++... + .+-... .... .....+..++|+|+++++++++ .++.|.+|++..
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~--~-~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDD--G-HLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTT--S-CEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCC--C-ceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 9999998777 4 7899999999741 2 111111 1111 1234678899999999876665 789999999953
Q ss_pred Cce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE-ecCCeEEEEEcC--Cc--eEEEEeeccCCCceeEEEe
Q 007489 356 SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV-NCFGDVYIFNLE--IQ--RQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 356 ~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~-~~dg~i~iwd~~--~~--~~~~~~~~~~~~~v~~l~~ 428 (601)
++. ...+..... .......+..++|+|+|++|+++ ..++.|.+|++. ++ +....++. + ..+..++|
T Consensus 212 g~~~~~~~~~~~~~-----~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~-~~~~~~~~ 284 (343)
T 1ri6_A 212 GNIECVQTLDMMPE-----NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-E-TQPRGFNV 284 (343)
T ss_dssp SCCEEEEEEECSCT-----TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-S-SSCCCEEE
T ss_pred CcEEEEeeccccCc-----cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-C-CccceEEE
Confidence 432 222221000 00023467789999999988754 478999999998 33 33333433 2 34889999
Q ss_pred cCCCCCEEEEEe-CCCeEEEEEcC--CCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 429 PPQNNNVLIITT-SSNQVYVFDVE--AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 429 ~p~~~~~l~~~~-~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+| ++++|++++ .++.|.+|+++ ++++... ..+.. .....+++|.|+
T Consensus 285 s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~---------~~~~~-g~~p~~i~~~~~ 333 (343)
T 1ri6_A 285 DH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEK---------GRYAV-GQGPMWVVVNAH 333 (343)
T ss_dssp CT-TSSEEEEECTTTCEEEEEEEETTTTEEEEE---------EEEEC-SSSCCEEEEEEE
T ss_pred CC-CCCEEEEecCCCCeEEEEEEcCCCceeeEc---------ccccc-CCCCeeEEEEcc
Confidence 99 999888888 57999999554 5543221 11211 245667777776
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=2.7e-23 Score=200.29 Aligned_cols=298 Identities=12% Similarity=0.039 Sum_probs=195.1
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCce-EEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhccc-
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL-CIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSF- 76 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~- 76 (601)
+|++++.++.|++||+.+++.+.++.. ++.. .+.+++|+|+| .+ +++..++.|.+||+.+++.+..+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITI-------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEEC-------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEc-------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 478999999999999999999988873 2221 47789999999 54 5667789999999999988766653
Q ss_pred ----cccceEEEEEeCCCCEEEEEe------------eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccce
Q 007489 77 ----HKGDVNALAAAPSHNRVFSTG------------SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV 140 (601)
Q Consensus 77 ----h~~~V~~l~~s~~~~~l~s~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 140 (601)
|...+.+++|+|+|++|++++ .++.|.+||+.+++. ...+. ....+
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----------------~~~~~-~~~~~ 137 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-----------------RKAFE-APRQI 137 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-----------------EEEEE-CCSSC
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-----------------EEEEe-CCCCc
Confidence 223678999999999999886 579999999987653 22222 24457
Q ss_pred eEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcccee
Q 007489 141 RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 220 (601)
Q Consensus 141 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (601)
.+++|+ |+++ .|+++ ++.|.+||+.+.+..........
T Consensus 138 ~~~~~s---------~dg~------------------------~l~~~--~~~i~~~d~~~~~~~~~~~~~~~------- 175 (337)
T 1pby_B 138 TMLAWA---------RDGS------------------------KLYGL--GRDLHVMDPEAGTLVEDKPIQSW------- 175 (337)
T ss_dssp CCEEEC---------TTSS------------------------CEEEE--SSSEEEEETTTTEEEEEECSTTT-------
T ss_pred ceeEEC---------CCCC------------------------EEEEe--CCeEEEEECCCCcEeeeeecccc-------
Confidence 778887 8886 66666 68899999876432211110000
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEE
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSL 300 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l 300 (601)
.....++|++..++..... . ..+.. +.......++..........+.+
T Consensus 176 -~~~~~~s~dg~~l~~~~~~---------~--------------~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 176 -EAETYAQPDVLAVWNQHES---------S--------------GVMAT--------PFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp -TTTTBCCCBCCCCCCCCTT---------T--------------TEEEE--------EEEEEBTTSCTTSGGGEEEEEEE
T ss_pred -CCCceeCCCccEEeeeccC---------C--------------Cceee--------eeeccccccccccccccccceEE
Confidence 0011334443322111000 0 00000 00000000000000000014667
Q ss_pred EEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCe
Q 007489 301 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI 380 (601)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 380 (601)
|++.. +... . .....+...+..++|+||+++++++ ++.|.+||+.+++.+..+.. ...+
T Consensus 224 ~d~~~---~~~~-~---~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------------~~~~ 282 (337)
T 1pby_B 224 MDLET---GEMA-M---REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL------------PHSY 282 (337)
T ss_dssp EETTT---CCEE-E---EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC------------SSCC
T ss_pred EeCCC---CCce-E---eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC------------CCce
Confidence 77764 2221 1 1222334567889999999999888 68999999999988877763 3457
Q ss_pred eEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc
Q 007489 381 TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 418 (601)
Q Consensus 381 ~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 418 (601)
.+++|+|||++|++++.++.|.+||+.+++....++..
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 89999999999999999999999999999887776643
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1e-22 Score=192.14 Aligned_cols=255 Identities=10% Similarity=0.042 Sum_probs=187.3
Q ss_pred EEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEecc-CcCCCCCCCCCccccceeEEec
Q 007489 53 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC-ESIGPNDGLSSSEVIKKWIYVG 131 (601)
Q Consensus 53 s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 131 (601)
+++.++.|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++. ..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----------------~~ 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----------------EK 77 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----------------EE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----------------eE
Confidence 4567899999999988765 4556899999999999999999886 88999999988 664 23
Q ss_pred Ccccc-ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC--CC--eEEEEeccccCCcC
Q 007489 132 SVRAH-THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD--DT--KLFAYCANEFTKFS 206 (601)
Q Consensus 132 ~~~~h-~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~--~v~~~~~~~~~~~~ 206 (601)
....| ...+.+++|+ |+++ .|++++. ++ .|+.++..+..
T Consensus 78 ~~~~~~~~~~~~~~~s---------pdg~------------------------~l~~~~~~~~~~~~l~~~~~~~~~--- 121 (297)
T 2ojh_A 78 VDTGFATICNNDHGIS---------PDGA------------------------LYAISDKVEFGKSAIYLLPSTGGT--- 121 (297)
T ss_dssp CCCTTCCCBCSCCEEC---------TTSS------------------------EEEEEECTTTSSCEEEEEETTCCC---
T ss_pred eccccccccccceEEC---------CCCC------------------------EEEEEEeCCCCcceEEEEECCCCc---
Confidence 33344 4678889998 8887 7888773 33 44444433211
Q ss_pred CCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC
Q 007489 207 PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 286 (601)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 286 (601)
...+ .....+.+++|+|+
T Consensus 122 ------------------------------------------------------------~~~~--~~~~~~~~~~~spd 139 (297)
T 2ojh_A 122 ------------------------------------------------------------PRLM--TKNLPSYWHGWSPD 139 (297)
T ss_dssp ------------------------------------------------------------CEEC--CSSSSEEEEEECTT
T ss_pred ------------------------------------------------------------eEEe--ecCCCccceEECCC
Confidence 0000 01134778899999
Q ss_pred CCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcC-CCceeeee
Q 007489 287 GMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVS-SSELLHTF 362 (601)
Q Consensus 287 g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~-~~~~~~~~ 362 (601)
++.|+. ..++.+++|+++.. +... ..+..+...+.+++|+|++++|++++ .++.+++|++. .+.....+
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~--~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDID--SGVE-----TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETT--TCCE-----EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred CCEEEEEECCCCceEEEEEECC--CCcc-----eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 998874 57889999998752 2222 33455567889999999999888776 48899999885 45555666
Q ss_pred ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----------CeEEEEEcCCceEEEEeec-cCCCceeEEEecC
Q 007489 363 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----------GDVYIFNLEIQRQHWFISR-LEGASVTAAGFPP 430 (601)
Q Consensus 363 ~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----------g~i~iwd~~~~~~~~~~~~-~~~~~v~~l~~~p 430 (601)
.. +...+..++|+|+|++|++++.+ +.|++||+.+++....... .+...+..++|+|
T Consensus 213 ~~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 213 TD-----------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp CC-----------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT
T ss_pred ec-----------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC
Confidence 65 67789999999999999988765 5699999998865433321 2345789999999
Q ss_pred CCCCEEEEEeCCC
Q 007489 431 QNNNVLIITTSSN 443 (601)
Q Consensus 431 ~~~~~l~~~~~dg 443 (601)
++++|++++.+.
T Consensus 282 -dg~~l~~~~~~~ 293 (297)
T 2ojh_A 282 -DGDEFAYVRYFP 293 (297)
T ss_dssp -TSSEEEEEEECC
T ss_pred -CCCEEEEEEecc
Confidence 999998887654
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.1e-21 Score=189.76 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=182.3
Q ss_pred cCCcEEEEECC--CCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcC---CCcEEEeeCCccc--hhhhcccccc
Q 007489 7 SDGYIRSWDAK--LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS---TGSVQFWDSRHGT--LLQAHSFHKG 79 (601)
Q Consensus 7 ~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~---dg~i~vwd~~~~~--~~~~~~~h~~ 79 (601)
.++.|.+|++. +|+....-.. .+...+..++|+|||.|++++. ++.|.+||+.+++ .+..+..+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~-------~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~ 86 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLL-------AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT 86 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEE-------EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred CCCCEEEEEEcCCCCeEEEeeee-------eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCC
Confidence 35567777764 4654332211 3445677899999995544443 6899999997665 4445556778
Q ss_pred ceEEEEEeCCCCEEEEEe-eCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc---------ccccceeEEEeeccc
Q 007489 80 DVNALAAAPSHNRVFSTG-SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR---------AHTHDVRALTVAVPI 149 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~~~~ 149 (601)
.+..++|+|||++|++++ .++.|.+|++..... ......+. .+...+.+++|+
T Consensus 87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~s--- 149 (347)
T 3hfq_A 87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA--------------LTLTDTVQHSGHGPRPEQDGSHIHYTDLT--- 149 (347)
T ss_dssp CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC--------------EEEEEEEECCCCCSSTTCSSCCEEEEEEC---
T ss_pred CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC--------------eeecceeecCCCCCCccccCCCceEEEEC---
Confidence 899999999999998887 679999999963211 00011111 122346778887
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
||++ ++++...++.|.+|++.....+.
T Consensus 150 ------pdg~------------------------l~v~~~~~~~v~~~~~~~~g~~~----------------------- 176 (347)
T 3hfq_A 150 ------PDNR------------------------LAVIDLGSDKVYVYNVSDAGQLS----------------------- 176 (347)
T ss_dssp ------TTSC------------------------EEEEETTTTEEEEEEECTTSCEE-----------------------
T ss_pred ------CCCc------------------------EEEEeCCCCEEEEEEECCCCcEE-----------------------
Confidence 7775 77777778889999876211000
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGK 307 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~ 307 (601)
.+..+.......+..++|+|||+++++ + .++.+.+|++....
T Consensus 177 ------------------------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 177 ------------------------------------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp ------------------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ------------------------------------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 011111122245778999999997666 3 67889999998511
Q ss_pred CCcceEEEee-ecCCcC---ccceeEEEEccCCCeEEE-EecCCcEEEEEcCC-C--ceeeeeccCcccccccCCCCCCC
Q 007489 308 VGQGEWIINK-RQLPRK---LQFAHSMIFSYDSSQLII-AGHDRRIYVVDVSS-S--ELLHTFTPCREEHDREIQPSEPP 379 (601)
Q Consensus 308 ~~~~~~~~~~-~~~~~~---~~~v~~i~~s~d~~~l~~-~~~dg~i~vwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~ 379 (601)
+ .+..+.. ...+.. ...+..++|+|||++|++ ...++.|.+|++.. + +.+..+.. +...
T Consensus 221 -g-~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-----------~~~~ 287 (347)
T 3hfq_A 221 -G-AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-----------EGDF 287 (347)
T ss_dssp -T-EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-----------SSSC
T ss_pred -C-ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-----------CCCC
Confidence 2 1111111 111111 145789999999998754 45589999999862 2 34444444 4566
Q ss_pred eeEEEEccCCCEEEEEecC-CeEEEEE--cCCceEE
Q 007489 380 ITKMFTSSDGQWLAAVNCF-GDVYIFN--LEIQRQH 412 (601)
Q Consensus 380 i~~l~~spd~~~las~~~d-g~i~iwd--~~~~~~~ 412 (601)
+..++|+|||++|++++.+ +.|.+|+ .++++..
T Consensus 288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8899999999999888754 8999994 4566654
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.3e-22 Score=212.93 Aligned_cols=332 Identities=15% Similarity=0.181 Sum_probs=209.8
Q ss_pred EEEEEEeeCCeEEEEcCCCcEEEeeCCccchh-hhccccc-----------------cceEEEEEeCCCCEEEEEeeCCe
Q 007489 40 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL-QAHSFHK-----------------GDVNALAAAPSHNRVFSTGSDGQ 101 (601)
Q Consensus 40 V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~-~~~~~h~-----------------~~V~~l~~s~~~~~l~s~~~dg~ 101 (601)
+..+.|+ .+.+++++.++ | +||+.+|+.+ ..+..|. ..|.+++|+|| +.++.+ .|+.
T Consensus 28 ~~~~~w~-g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~ 102 (706)
T 2z3z_A 28 VVGLQWM-GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGG 102 (706)
T ss_dssp CTTCEEE-TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTE
T ss_pred CCCCcCc-CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCE
Confidence 5557888 44788887788 8 9999999874 4444333 46999999999 666555 4699
Q ss_pred EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCC
Q 007489 102 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 181 (601)
Q Consensus 102 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (601)
|++||+.+++ ...+..+...+.+++|+ |||+
T Consensus 103 i~~~d~~~~~------------------~~~l~~~~~~~~~~~~S---------pdG~---------------------- 133 (706)
T 2z3z_A 103 LVGFDMLARK------------------VTYLFDTNEETASLDFS---------PVGD---------------------- 133 (706)
T ss_dssp EEEEETTTTE------------------EEEEECCTTCCTTCEEC---------TTSS----------------------
T ss_pred EEEEECCCCc------------------eEEccCCcccccCCcCC---------CCCC----------------------
Confidence 9999998876 33444566678888998 9987
Q ss_pred CCEEEEecCCCeEEEEeccc-----cCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCC
Q 007489 182 VPMLISAGDDTKLFAYCANE-----FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 256 (601)
Q Consensus 182 ~~~l~s~~~d~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~ 256 (601)
.|+++ .|+.|++|++.+ ........ .... . +..+ +.
T Consensus 134 --~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~---~~~~---------------~-~~~g--------~~--------- 174 (706)
T 2z3z_A 134 --RVAYV-RNHNLYIARGGKLGEGMSRAIAVTI---DGTE---------------T-LVYG--------QA--------- 174 (706)
T ss_dssp --EEEEE-ETTEEEEEECBCTTSCCCCCEESCS---CCBT---------------T-EEES--------SC---------
T ss_pred --EEEEE-ECCeEEEEecCcccccCCCcEEecc---CCCC---------------C-eEcc--------cc---------
Confidence 77774 679999999876 32111000 0000 0 0000 00
Q ss_pred CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc----------------------------------CCccEEEE
Q 007489 257 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD----------------------------------HVKPSLFE 302 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----------------------------------~~~v~l~~ 302 (601)
....+...+.+++|||||++|+++. +..|++|+
T Consensus 175 -------------~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 175 -------------VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp -------------CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred -------------hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 0001123466788888888888732 34577777
Q ss_pred eecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC-----cEEEEEcCCCceeeeeccCcccccccCCCCC
Q 007489 303 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-----RIYVVDVSSSELLHTFTPCREEHDREIQPSE 377 (601)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (601)
+.. +... .......+...+.+++|+|||++|++++.++ .|++||+.+++....+..... ....
T Consensus 242 ~~~---~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~------~~~~ 309 (706)
T 2z3z_A 242 LAT---GKTV---YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD------KHYV 309 (706)
T ss_dssp TTT---TEEE---ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC------SSCC
T ss_pred CCC---CceE---eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC------CCeE
Confidence 764 2211 0011124556789999999999999988775 899999998843333321100 0011
Q ss_pred CCeeEEEEcc--CCCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCceeE-EEecCCCCCEEEEEeCC-C----eEEEE
Q 007489 378 PPITKMFTSS--DGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTA-AGFPPQNNNVLIITTSS-N----QVYVF 448 (601)
Q Consensus 378 ~~i~~l~~sp--d~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~-l~~~p~~~~~l~~~~~d-g----~v~vw 448 (601)
..+..++|+| ||++|++++.||.++||.++ +++....+.. +...+.. ++|+| +++.|++++.+ + .|+.|
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC-SSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC-CCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEE
Confidence 2346789999 99999999999999999876 4555445543 3345766 79999 98887766544 4 67777
Q ss_pred EcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE-cC----ceEEEEeCCC
Q 007489 449 DVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-SA----RAMCVIDFGR 506 (601)
Q Consensus 449 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~-~~----~~~~~~~~~~ 506 (601)
|+.+++... + .+...+.+++|+|+ +..+++. +. ..+.++|+..
T Consensus 388 d~~~~~~~~------------l-~~~~~~~~~~~spd--g~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 388 DIKGGKTKD------------L-TPESGMHRTQLSPD--GSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp ETTCCCCEE------------S-CCSSSEEEEEECTT--SSEEEEEEECSSCSCEEEEEESSS
T ss_pred EcCCCCcee------------c-cCCCceEEEEECCC--CCEEEEEecCCCCCcEEEEEECCC
Confidence 877765321 2 25567899999999 3444433 21 2366777643
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.4e-22 Score=216.51 Aligned_cols=328 Identities=9% Similarity=0.029 Sum_probs=211.5
Q ss_pred EEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcccccc---ceEEEEEeCCCCEEEEEeeC---------CeEEEEE
Q 007489 39 CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG---DVNALAAAPSHNRVFSTGSD---------GQVILYK 106 (601)
Q Consensus 39 ~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~d---------g~i~vw~ 106 (601)
.+.+++|+|||.++..+.||.|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.|.+||
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 46789999999444447899999999999988877777765 49999999999999998764 7888999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEE
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 186 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (601)
+.+++. ..+.....|...+..++|+ |||+ .|+
T Consensus 98 ~~~~~~---------------~~l~~~~~~~~~~~~~~~S---------PdG~------------------------~la 129 (723)
T 1xfd_A 98 IPHGDP---------------QSLDPPEVSNAKLQYAGWG---------PKGQ------------------------QLI 129 (723)
T ss_dssp SSSCCC---------------EECCCTTCCSCCCSBCCBC---------SSTT------------------------CEE
T ss_pred CCCCce---------------EeccCCccccccccccEEC---------CCCC------------------------EEE
Confidence 988763 0122233455568888888 9997 777
Q ss_pred EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce
Q 007489 187 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 266 (601)
Q Consensus 187 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (601)
.++. +.|++|++.+........ .. ..+.++... .-|... +
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~---~~--------------~~~~~~~g~----~~~v~~--e---------------- 169 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVS---TG--------------KEGVIYNGL----SDWLYE--E---------------- 169 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEEC---CC--------------BTTTEEEEE----CCHHHH--H----------------
T ss_pred EEEC-CeEEEEECCCCceEEEec---CC--------------CCCceECcc----cceeEE--E----------------
Confidence 7765 789999987632110000 00 000000000 000000 0
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec
Q 007489 267 LVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH 344 (601)
Q Consensus 267 ~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~ 344 (601)
.-...+.+++|||||+.|+++ .+..+.+|++.... ..+...+..+.|+++|.. ..
T Consensus 170 ------e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~G~~----~~ 226 (723)
T 1xfd_A 170 ------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-------------GSIYPTVKPYHYPKAGSE----NP 226 (723)
T ss_dssp ------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-------------SSSSCCCEEEECCBTTSC----CC
T ss_pred ------EeccCcceEEECCCCCEEEEEEECCCccceEEeeccC-------------CcCCCcceeccCCCCCCC----CC
Confidence 001345789999999999883 45677788775311 112335788899988863 33
Q ss_pred CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec----CCeEEEEEcCCceEEEEeeccCC
Q 007489 345 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----FGDVYIFNLEIQRQHWFISRLEG 420 (601)
Q Consensus 345 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~----dg~i~iwd~~~~~~~~~~~~~~~ 420 (601)
+..|++||+.+++....+..+.. ...+...+..++|||||++|++... +..|++||+.+++....+...+.
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 301 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDD-----PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE 301 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCC-----GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS
T ss_pred eeEEEEEECCCCceeEEeeCCcc-----CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC
Confidence 45899999998876555654210 0013567899999999999977653 35799999999887655543333
Q ss_pred Cce----eEEEecCCCCCEEEEE--eCCC------eEEEEE-cCCCCcccchhcccCCcCcccccCCCcEEE-EEeCCCC
Q 007489 421 ASV----TAAGFPPQNNNVLIIT--TSSN------QVYVFD-VEAKQLGEWSMQHTFVLPRRYQEFPGEVIG-LSFSPSP 486 (601)
Q Consensus 421 ~~v----~~l~~~p~~~~~l~~~--~~dg------~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-i~~~p~~ 486 (601)
..+ ..++|+| |++.|+.. ..++ .|++|| ..+++.. ....+..+...+.. ++|+|+
T Consensus 302 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---------~~~~l~~~~~~~~~~~~~spd- 370 (723)
T 1xfd_A 302 AWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---------NIQSITSGDWDVTKILAYDEK- 370 (723)
T ss_dssp SCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---------CCCBSCCSSSCEEEEEEEETT-
T ss_pred CEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---------ceeEeecCCeEEEeeeEEcCC-
Confidence 333 3789999 99877754 4566 567777 3444300 01123333334554 699999
Q ss_pred CCCEEEEE
Q 007489 487 SSSSVIIY 494 (601)
Q Consensus 487 ~~~~~~~~ 494 (601)
+..|++.
T Consensus 371 -g~~l~~~ 377 (723)
T 1xfd_A 371 -GNKIYFL 377 (723)
T ss_dssp -TTEEEEE
T ss_pred -CCEEEEE
Confidence 5566544
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=7.3e-22 Score=190.17 Aligned_cols=267 Identities=9% Similarity=0.061 Sum_probs=192.2
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhcccccc--ceEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccce
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKG--DVNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKK 126 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 126 (601)
.|++++.++.|.+||+.+++.+..+..... .+.+++|+|+|++++ +++.++.|.+||+.+++.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------- 68 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-------------- 68 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--------------
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--------------
Confidence 688999999999999999988877763222 588999999998765 556678999999988763
Q ss_pred eEEecCccc-----cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec------------
Q 007489 127 WIYVGSVRA-----HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG------------ 189 (601)
Q Consensus 127 ~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------------ 189 (601)
...+.. |...+..++|+ |+++ .|++++
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~~~s---------~dg~------------------------~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 69 ---LGRIDLSTPEERVKSLFGAALS---------PDGK------------------------TLAIYESPVRLELTHFEV 112 (337)
T ss_dssp ---EEEEECCBTTEEEECTTCEEEC---------TTSS------------------------EEEEEEEEEEECSSCEEE
T ss_pred ---EeeEEcCCcccccccccceEEC---------CCCC------------------------EEEEEecccccccccccc
Confidence 222211 22356778887 8886 677665
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
.++.|.+||+.+.+ .+..
T Consensus 113 ~~~~i~v~d~~~~~--------------------------------------------------------------~~~~ 130 (337)
T 1pby_B 113 QPTRVALYDAETLS--------------------------------------------------------------RRKA 130 (337)
T ss_dssp CCCEEEEEETTTTE--------------------------------------------------------------EEEE
T ss_pred cCceEEEEECCCCc--------------------------------------------------------------EEEE
Confidence 46788888876411 1111
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC---
Q 007489 270 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR--- 346 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg--- 346 (601)
+.. ...+.+++|+|+|++|+++ ++.+++|++.. +..... ........ .+.|+||++++++.+..+
T Consensus 131 ~~~--~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~---~~~~~~---~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~ 198 (337)
T 1pby_B 131 FEA--PRQITMLAWARDGSKLYGL-GRDLHVMDPEA---GTLVED---KPIQSWEA---ETYAQPDVLAVWNQHESSGVM 198 (337)
T ss_dssp EEC--CSSCCCEEECTTSSCEEEE-SSSEEEEETTT---TEEEEE---ECSTTTTT---TTBCCCBCCCCCCCCTTTTEE
T ss_pred EeC--CCCcceeEECCCCCEEEEe-CCeEEEEECCC---CcEeee---eeccccCC---CceeCCCccEEeeeccCCCce
Confidence 111 2446778899999988877 68899999875 333211 11111112 227899998776554332
Q ss_pred ---------------------cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 347 ---------------------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 347 ---------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
.|.+||+.+++.. .+.... +...+.+++|+||+++|+++ ++.|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---------~~~~~~~~~~s~dg~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---------MDVFYFSTAVNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---------CSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred eeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---------CCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence 4689999888764 322111 56678899999999999988 78999999
Q ss_pred cCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 406 LEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 406 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.+++....+... ..+.+++|+| ++++|++++.++.|++||+.+++.
T Consensus 267 ~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 267 LEKNASIKRVPLP--HSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp TTTTEEEEEEECS--SCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCcCcceecCC--CceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence 9999887666642 4688999999 999999999999999999998874
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.8e-21 Score=186.49 Aligned_cols=273 Identities=10% Similarity=0.065 Sum_probs=197.8
Q ss_pred ceEEEEEEEeeCC-eEEEEcC-------CCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEE-EEeeCCeEEEEEe
Q 007489 37 ELCIWSLLSLRCG-TLVSADS-------TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILYKA 107 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~-------dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vw~~ 107 (601)
...+..++|+|+| ++++++. ++.|.+||..+++.+..+.. ...+..++|+|+|++++ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3457899999999 6666553 56899999999998887764 34578999999999665 5556799999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccccc---------cceeEEEeeccccCCCCCCcccccccCCCCccccccccccc
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRAHT---------HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 178 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (601)
.+++. ...+..+. ..+.+++++ |+++
T Consensus 119 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~s---------~dg~------------------- 153 (353)
T 3vgz_A 119 KTGEV-----------------KGRLVLDDRKRTEEVRPLQPRELVAD---------DATN------------------- 153 (353)
T ss_dssp TTCCE-----------------EEEEESCCCCCCSSCCCCEEEEEEEE---------TTTT-------------------
T ss_pred CCCee-----------------EEEEecCCCccccccCCCCCceEEEC---------CCCC-------------------
Confidence 88763 22222221 126788888 8876
Q ss_pred cCCCCEEEEec--CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCC
Q 007489 179 HLGVPMLISAG--DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 256 (601)
Q Consensus 179 ~~~~~~l~s~~--~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~ 256 (601)
.+++++ .++.|.+||..+.+.
T Consensus 154 -----~l~~~~~~~~~~i~~~d~~~~~~---------------------------------------------------- 176 (353)
T 3vgz_A 154 -----TVYISGIGKESVIWVVDGGNIKL---------------------------------------------------- 176 (353)
T ss_dssp -----EEEEEEESSSCEEEEEETTTTEE----------------------------------------------------
T ss_pred -----EEEEEecCCCceEEEEcCCCCce----------------------------------------------------
Confidence 555554 578899999875210
Q ss_pred CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccC
Q 007489 257 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD 335 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d 335 (601)
+..+. .....+.+++|+|+|+++++ +.++.+.+||+.. +..++.+.. ...++...+..++|+|+
T Consensus 177 ----------~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 177 ----------KTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTAD---NKILSRKKL-LDDGKEHFFINISLDTA 241 (353)
T ss_dssp ----------EEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT---TEEEEEEEC-CCSSSCCCEEEEEEETT
T ss_pred ----------EEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCC---CeEEEEEEc-CCCCCCcccceEEECCC
Confidence 11111 01234667889999998887 5788999999875 443322221 11223456788999999
Q ss_pred CCeEEEEecC-CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceEEE
Q 007489 336 SSQLIIAGHD-RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHW 413 (601)
Q Consensus 336 ~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~~~ 413 (601)
++++++++.+ +.|.+||+.+++.+..+.. .. ...++|+|+++++++++ .++.|.+||+.+++...
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAA-----------PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEEC-----------SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEc-----------CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 9988777654 8999999999998877764 22 25699999999766655 68999999999998877
Q ss_pred EeeccCCCceeEEEecCCCCCEEEEEeCCC
Q 007489 414 FISRLEGASVTAAGFPPQNNNVLIITTSSN 443 (601)
Q Consensus 414 ~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg 443 (601)
.+.. +..+.+++|+| ++++|+++..++
T Consensus 309 ~~~~--~~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 309 TFDT--PTHPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEC--CSEEEEEEECT-TSCEEEEEEECC
T ss_pred EEec--CCCCCeEEEcC-CCCEEEEEEccc
Confidence 7664 24789999999 999888877654
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=3.6e-20 Score=179.56 Aligned_cols=282 Identities=10% Similarity=0.070 Sum_probs=195.6
Q ss_pred cccceEEEEEeCCCCEEEEEee-------CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 77 HKGDVNALAAAPSHNRVFSTGS-------DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
....+..++|+|+++++++++. ++.|.+||..+++. ...+. ....+..++++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-----------------~~~~~-~~~~~~~~~~s--- 97 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-----------------TQAIH-NDLKPFGATIN--- 97 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-----------------EEEEE-ESSCCCSEEEE---
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-----------------EEEEe-cCCCcceEEEC---
Confidence 4456789999999999988773 67899999988763 22222 23446778887
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
|+++ ..+++...++.|.+||..+.+....
T Consensus 98 ------~dg~-----------------------~l~v~~~~~~~v~~~d~~~~~~~~~---------------------- 126 (353)
T 3vgz_A 98 ------NTTQ-----------------------TLWFGNTVNSAVTAIDAKTGEVKGR---------------------- 126 (353)
T ss_dssp ------TTTT-----------------------EEEEEETTTTEEEEEETTTCCEEEE----------------------
T ss_pred ------CCCC-----------------------EEEEEecCCCEEEEEeCCCCeeEEE----------------------
Confidence 8876 2555666688999999876321100
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE---cCCccEEEEeecC
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS---DHVKPSLFELKKG 306 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~~~v~l~~~~~~ 306 (601)
+........ .......+.+++++|+|+.++++ .++.|.+||+..
T Consensus 127 --------------~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~- 173 (353)
T 3vgz_A 127 --------------LVLDDRKRT------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN- 173 (353)
T ss_dssp --------------EESCCCCCC------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-
T ss_pred --------------EecCCCccc------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-
Confidence 000000000 00001236789999999987773 367899999875
Q ss_pred CCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc
Q 007489 307 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 386 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 386 (601)
+.... .+..+...+..++|+|++++|++++.++.|.+||+.+++.+..+.... .++...+..++|+
T Consensus 174 --~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~s 239 (353)
T 3vgz_A 174 --IKLKT-----AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD-------DGKEHFFINISLD 239 (353)
T ss_dssp --TEEEE-----EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC-------SSSCCCEEEEEEE
T ss_pred --CceEE-----EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC-------CCCCcccceEEEC
Confidence 33332 222223346789999999999999999999999999998887766411 0134568889999
Q ss_pred cCCCEEEEEec-CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe-CCCeEEEEEcCCCCcccchhcccC
Q 007489 387 SDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQLGEWSMQHTF 464 (601)
Q Consensus 387 pd~~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~ 464 (601)
|++++|++++. ++.|.+||+.+++....+.... ...++|+| ++++|++++ .++.|.+||+.+++...
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~------- 308 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVVK------- 308 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEET-TTTEEEEEETTTTEEEEEETTTTEEEE-------
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECC-CCCEEEEEECCCCeEEEEECCCCeEEE-------
Confidence 99998877665 4999999999998877766432 36799999 988766665 68999999999877422
Q ss_pred CcCcccccCCCcEEEEEeCCCCCCCEEEEEc
Q 007489 465 VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 465 ~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
.+. ....+.+++|+|+ ++.+++..
T Consensus 309 ----~~~-~~~~~~~~~~s~d--g~~l~v~~ 332 (353)
T 3vgz_A 309 ----TFD-TPTHPNSLALSAD--GKTLYVSV 332 (353)
T ss_dssp ----EEE-CCSEEEEEEECTT--SCEEEEEE
T ss_pred ----EEe-cCCCCCeEEEcCC--CCEEEEEE
Confidence 222 2347899999998 55565543
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=9.6e-22 Score=204.09 Aligned_cols=269 Identities=13% Similarity=0.056 Sum_probs=187.0
Q ss_pred ceEEEEEEEeeCC-eEEEEcC-CCcEEEeeCCccchhhhccccc-cceEEEEEeCCCCEEEEEee---CCeEEEEEecc-
Q 007489 37 ELCIWSLLSLRCG-TLVSADS-TGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGS---DGQVILYKASC- 109 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~-dg~i~vwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~---dg~i~vw~~~~- 109 (601)
..+|++++|+||| +||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 4579999999999 8888776 999999999766554 444444 68999999999 77777765 55667776654
Q ss_pred -CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe
Q 007489 110 -ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 188 (601)
Q Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 188 (601)
... ...+.. ...+...+|+ ||++ ..+++.
T Consensus 99 ~~g~-----------------~~~l~~-~~~~~~~~~s---------~dg~-----------------------~~~~~s 128 (582)
T 3o4h_A 99 RPGE-----------------EQRLEA-VKPMRILSGV---------DTGE-----------------------AVVFTG 128 (582)
T ss_dssp STTC-----------------CEECTT-SCSBEEEEEE---------ECSS-----------------------CEEEEE
T ss_pred CCCc-----------------cccccC-CCCceeeeeC---------CCCC-----------------------eEEEEe
Confidence 221 011111 1123345666 6764 234444
Q ss_pred cCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 189 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 189 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
+.++.+.+||+.+.. ..
T Consensus 129 ~~~~~~~l~d~~~g~---------------------------------------------------------------~~ 145 (582)
T 3o4h_A 129 ATEDRVALYALDGGG---------------------------------------------------------------LR 145 (582)
T ss_dssp ECSSCEEEEEEETTE---------------------------------------------------------------EE
T ss_pred cCCCCceEEEccCCc---------------------------------------------------------------EE
Confidence 444444588876411 11
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEE-EcC----CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe
Q 007489 269 QVKSKASRKIICSTISNSGMLFAY-SDH----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~-~~~----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~ 343 (601)
++.... . .+++|||||++|++ +.+ ..|++|++.. +.. ..+..+...+..++|||||++|+++.
T Consensus 146 ~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~---g~~------~~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 146 ELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGL------RVFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp EEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT---CCC------EEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred EeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC---CCc------eEeecCCCccccceECCCCCEEEEcc
Confidence 111111 2 67889999999997 444 5677887764 222 23455667789999999999999888
Q ss_pred cCC--cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEE--------EccCCCEEEEEecCCeEEEEEcCCceEEE
Q 007489 344 HDR--RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF--------TSSDGQWLAAVNCFGDVYIFNLEIQRQHW 413 (601)
Q Consensus 344 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--------~spd~~~las~~~dg~i~iwd~~~~~~~~ 413 (601)
.++ .|++||+.+++.. .+.. +...+..++ |||||.++++++.++.++||++ ++...
T Consensus 214 ~~~~~~i~~~d~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 214 TAREARLVTVDPRDGSVE-DLEL-----------PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp CSSCEEEEEECTTTCCEE-ECCC-----------SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred CCCeeEEEEEcCCCCcEE-EccC-----------CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 888 8999999988876 5555 556666666 9999999999999999999999 55432
Q ss_pred EeeccCCCceeEEEecCCCCCEEEEEeCCC---eEEEEEcCC
Q 007489 414 FISRLEGASVTAAGFPPQNNNVLIITTSSN---QVYVFDVEA 452 (601)
Q Consensus 414 ~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg---~v~vwd~~~ 452 (601)
. ....+.+++|+ +++++++++.+. .+++||..+
T Consensus 280 ---~-~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 ---A-PQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ---C-CSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ---c-CCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 2 23578899999 677888887774 477777654
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=4.6e-20 Score=179.31 Aligned_cols=309 Identities=12% Similarity=0.071 Sum_probs=190.7
Q ss_pred ecCCcEEEEEC--CCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC----CcEEEeeCCc--cch--hhhc
Q 007489 6 SSDGYIRSWDA--KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST----GSVQFWDSRH--GTL--LQAH 74 (601)
Q Consensus 6 ~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d----g~i~vwd~~~--~~~--~~~~ 74 (601)
+.++.|.+|.+ .+|+...... .+...+..++|+||| +|++++.+ +.|.+|++.. +++ +...
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~--------~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~ 95 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSD--------AEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ 95 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEE--------EECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEeec--------ccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe
Confidence 45678999976 4566544333 234556779999999 78887775 7999998764 432 3334
Q ss_pred cccccceEEEEEeCCCCEEEEEe-eCCeEEEEEeccCcCCCCCCCCCccccceeEE----ecCccccccceeEEEeeccc
Q 007489 75 SFHKGDVNALAAAPSHNRVFSTG-SDGQVILYKASCESIGPNDGLSSSEVIKKWIY----VGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 75 ~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~ 149 (601)
..+...+..+++ ++++|++++ .++.|.+|++......... ...... ....+.+...+.+++|+
T Consensus 96 ~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~s--- 163 (361)
T 3scy_A 96 KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA-------SDVIEFKGSGPDKERQTMPHLHCVRIT--- 163 (361)
T ss_dssp ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC-------SEEEECCCCCSCTTTCSSCCEEEEEEC---
T ss_pred ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc-------ceeEEccCCCCCccccCCCcceEEEEC---
Confidence 445567778888 888888766 5789999999754320000 000000 00011223345778888
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEE-EecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
|||+ .++ +...++.|.+|++.......... .
T Consensus 164 ------pdg~------------------------~l~~~~~~~~~v~v~~~~~~~~~~~~~-------~----------- 195 (361)
T 3scy_A 164 ------PDGK------------------------YLLADDLGTDQIHKFNINPNANADNKE-------K----------- 195 (361)
T ss_dssp ------TTSS------------------------EEEEEETTTTEEEEEEECTTCCTTTCC-------C-----------
T ss_pred ------CCCC------------------------EEEEEeCCCCEEEEEEEcCCCCccccc-------c-----------
Confidence 8886 554 44457899999876422100000 0
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecC
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKG 306 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~ 306 (601)
+... + ............+..++|+|||+++++ + .++.|.+|++..
T Consensus 196 ----l~~~--~--------------------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~- 242 (361)
T 3scy_A 196 ----FLTK--G--------------------------TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD- 242 (361)
T ss_dssp ----CEEE--E--------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-
T ss_pred ----eeec--c--------------------------cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-
Confidence 0000 0 001112222355788999999998877 4 588999999984
Q ss_pred CCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC--CcEEEEEcC--CCc--eeeeeccCcccccccCCCCCCCe
Q 007489 307 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD--RRIYVVDVS--SSE--LLHTFTPCREEHDREIQPSEPPI 380 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d--g~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~i 380 (601)
+.............+......++|+|||++|+++..+ +.|.+|++. +++ .+..+. ....+
T Consensus 243 --g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~------------~g~~~ 308 (361)
T 3scy_A 243 --GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL------------TGIHP 308 (361)
T ss_dssp --TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE------------CSSCC
T ss_pred --CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec------------CCCCC
Confidence 2211101112233344556899999999998777665 889999985 444 333333 23457
Q ss_pred eEEEEccCCCEEEEEe-cCCeEEEEEc--CCceEEEEeeccCCCceeEEEec
Q 007489 381 TKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 381 ~~l~~spd~~~las~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
..++|+|||++|++++ .++.|.+|++ ++++........+...+.++.|.
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7899999999998887 6789999655 56766543333344578888886
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=5.8e-20 Score=177.56 Aligned_cols=289 Identities=12% Similarity=0.128 Sum_probs=182.6
Q ss_pred CCcEEEeeC--Cccchhh-hccccccceEEEEEeCCCCEEEEEee---CCeEEEEEeccCcCCCCCCCCCccccceeEEe
Q 007489 57 TGSVQFWDS--RHGTLLQ-AHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKKWIYV 130 (601)
Q Consensus 57 dg~i~vwd~--~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (601)
++.|.+|++ .++++.. ....+...+..++|+|||+ |++++. ++.|.+|++.++.. ..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------~~~ 78 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------HKL 78 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------EEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------EEe
Confidence 455777655 4555433 2334567788999999999 666554 68999999976542 123
Q ss_pred cCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec-CCCeEEEEeccccCCcCCCc
Q 007489 131 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPHE 209 (601)
Q Consensus 131 ~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~~~~~~~~~~~~~ 209 (601)
..+..+...+..++|+ ||++ .|++++ .++.+.+|++.......
T Consensus 79 ~~~~~~~~~p~~~a~s---------pdg~------------------------~l~~~~~~~~~v~v~~~~~~g~~~--- 122 (347)
T 3hfq_A 79 NTVVAPGTPPAYVAVD---------EARQ------------------------LVYSANYHKGTAEVMKIAADGALT--- 122 (347)
T ss_dssp EEEEEESCCCSEEEEE---------TTTT------------------------EEEEEETTTTEEEEEEECTTSCEE---
T ss_pred eeeecCCCCCEEEEEC---------CCCC------------------------EEEEEeCCCCEEEEEEeCCCCCee---
Confidence 3344567788899998 8887 777776 67899999986311000
Q ss_pred cCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 007489 210 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 289 (601)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 289 (601)
.+ ..+....... . .......+.+++|+|+|++
T Consensus 123 -----------~~---------------------~~~~~~~~~p----~------------~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 123 -----------LT---------------------DTVQHSGHGP----R------------PEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp -----------EE---------------------EEEECCCCCS----S------------TTCSSCCEEEEEECTTSCE
T ss_pred -----------ec---------------------ceeecCCCCC----C------------ccccCCCceEEEECCCCcE
Confidence 00 0000000000 0 0011245889999999995
Q ss_pred EEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE-ecCCcEEEEEcCC--Cce--eeeec
Q 007489 290 FAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSS--SEL--LHTFT 363 (601)
Q Consensus 290 l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~-~~dg~i~vwd~~~--~~~--~~~~~ 363 (601)
+++. .++.+++|++.. .+. +-........ .......++|+|||++++++ ..++.|.+|++.. ++. +..+.
T Consensus 155 ~v~~~~~~~v~~~~~~~--~g~-~~~~~~~~~~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 230 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSD--AGQ-LSEQSVLTME-AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK 230 (347)
T ss_dssp EEEETTTTEEEEEEECT--TSC-EEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEECC--CCc-EEEeeeEEcC-CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence 5554 577899999983 122 1111111221 12356789999999977664 5678999999864 443 22222
Q ss_pred cCcccccccCCCCCCCeeEEEEccCCCEEE-EEecCCeEEEEEcCCc---eEEEEeeccCCCceeEEEecCCCCCEEEEE
Q 007489 364 PCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCFGDVYIFNLEIQ---RQHWFISRLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~l~~spd~~~la-s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
..... ......+..++|+|||++|+ +...++.|.+|+++.. +....++. ++..+..++|+| ++++|+++
T Consensus 231 ~~~~~-----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~sp-dg~~l~v~ 303 (347)
T 3hfq_A 231 TIPAD-----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDP-TEAFVVVV 303 (347)
T ss_dssp SSCTT-----CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECT-TSSEEEEE
T ss_pred ecCCC-----CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECC-CCCEEEEE
Confidence 21000 00124588999999999885 5556899999999732 33333332 345689999999 99998888
Q ss_pred eCC-CeEEEEEc--CCCCcc
Q 007489 440 TSS-NQVYVFDV--EAKQLG 456 (601)
Q Consensus 440 ~~d-g~v~vwd~--~~~~~~ 456 (601)
+.+ +.|.+|++ +++++.
T Consensus 304 ~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ETTTTEEEEEEECTTTCCEE
T ss_pred EcCCCcEEEEEEeCCCCeEE
Confidence 765 89999955 556643
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=2e-19 Score=174.81 Aligned_cols=315 Identities=13% Similarity=0.156 Sum_probs=192.8
Q ss_pred eEEEEc----CCCcEEEeeC--CccchhhhccccccceEEEEEeCCCCEEEEEeeC----CeEEEEEeccCcCCCCCCCC
Q 007489 50 TLVSAD----STGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD----GQVILYKASCESIGPNDGLS 119 (601)
Q Consensus 50 ~l~s~~----~dg~i~vwd~--~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~ 119 (601)
+++.|+ .++.|.+|++ .++++......+...+..++|+|||++|++++.+ +.|.+|++....-
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g------- 87 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG------- 87 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------
Confidence 455553 4568889866 5565433222267788899999999999999876 7999999876310
Q ss_pred CccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEe-cCCCeEEEEe
Q 007489 120 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKLFAYC 198 (601)
Q Consensus 120 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~~~~ 198 (601)
....+.....+......+++ +++ .|+++ ..++.|.+|+
T Consensus 88 ------~~~~~~~~~~~~~~p~~~~~-----------dg~------------------------~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 88 ------TLHLLNTQKTMGADPCYLTT-----------NGK------------------------NIVTANYSGGSITVFP 126 (361)
T ss_dssp ------EEEEEEEEECSSSCEEEEEE-----------CSS------------------------EEEEEETTTTEEEEEE
T ss_pred ------cEEEeeEeccCCCCcEEEEE-----------CCC------------------------EEEEEECCCCEEEEEE
Confidence 01112222223334444443 232 45554 4678999999
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
+.....+..... . .... .... .. ...+...+
T Consensus 127 ~~~~g~~~~~~~----------~----------------------~~~~-g~~~-----~~-----------~~~~~~~~ 157 (361)
T 3scy_A 127 IGQDGALLPASD----------V----------------------IEFK-GSGP-----DK-----------ERQTMPHL 157 (361)
T ss_dssp BCTTSCBCSCSE----------E----------------------EECC-CCCS-----CT-----------TTCSSCCE
T ss_pred eCCCCcCcccce----------e----------------------EEcc-CCCC-----Cc-----------cccCCCcc
Confidence 875332211110 0 0000 0000 00 00112457
Q ss_pred EEEEEcCCCCEEEE-E-cCCccEEEEeecCCCC---cceEEE---eeecCCcCccceeEEEEccCCCeEEEEe-cCCcEE
Q 007489 279 ICSTISNSGMLFAY-S-DHVKPSLFELKKGKVG---QGEWII---NKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIY 349 (601)
Q Consensus 279 ~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~---~~~~~~---~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~ 349 (601)
.+++|+|+|+++++ + .++.+++|++...... ..+... ...... .......++|+|||+++++++ .++.|.
T Consensus 158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA-PGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC-CCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 88999999997766 3 4788999999862210 101101 112222 234568899999999888777 589999
Q ss_pred EEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC--CeEEEEEcC--Cce--EEEEeeccCCC
Q 007489 350 VVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF--GDVYIFNLE--IQR--QHWFISRLEGA 421 (601)
Q Consensus 350 vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~ 421 (601)
+|++.+++. +..+.... .+......++|||||++|+++..+ +.|.+|+++ +++ ....+.. +.
T Consensus 237 v~~~~~g~~~~~~~~~~~~--------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~ 306 (361)
T 3scy_A 237 AFRYADGMLDEIQTVAADT--------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GI 306 (361)
T ss_dssp EEEEETTEEEEEEEEESCS--------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SS
T ss_pred EEEecCCceEEeEEEecCC--------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CC
Confidence 999987754 23232211 134557899999999999776654 899999996 444 3333333 45
Q ss_pred ceeEEEecCCCCCEEEEEe-CCCeEEEEEc--CCCCcccchhcccCCcCcccccCCCcEEEEEeC
Q 007489 422 SVTAAGFPPQNNNVLIITT-SSNQVYVFDV--EAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFS 483 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 483 (601)
.+.+++|+| ++++|++++ .++.|.+|++ +++++... .. ..+...+.++.|.
T Consensus 307 ~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~--------~~--~~~~~~p~~v~~~ 360 (361)
T 3scy_A 307 HPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDI--------KK--DIKVDKPVCLKFV 360 (361)
T ss_dssp CCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEEC--------SC--CEECSSEEEEEEE
T ss_pred CCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeec--------ce--eeeCCCCeEEEEc
Confidence 788999999 999998887 5789999755 46654321 00 1133568888885
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=2.5e-20 Score=180.40 Aligned_cols=289 Identities=11% Similarity=0.016 Sum_probs=187.4
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhcccc-
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFH- 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h- 77 (601)
++++++.++.|++||+.+++.+.++.. +....+..++|+|+| .+ +++..++.|.+||+.+++.+..+..+
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEec-------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 378899999999999999999988873 121246789999999 44 56677899999999999887666532
Q ss_pred -----ccceEEEEEeCCCCEEEEEeeC------------CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccce
Q 007489 78 -----KGDVNALAAAPSHNRVFSTGSD------------GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV 140 (601)
Q Consensus 78 -----~~~V~~l~~s~~~~~l~s~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 140 (601)
...+.+++|+|+|++|++++.+ +.|.+||+.+++.... .. ...+...+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--------------~~-~~~~~~~~ 150 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--------------VR-TFPMPRQV 150 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--------------SE-EEECCSSC
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--------------ee-eccCCCcc
Confidence 2347899999999999998876 9999999988542100 11 11233457
Q ss_pred eEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCcccee
Q 007489 141 RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 220 (601)
Q Consensus 141 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (601)
.+++|+ ||++ +++ ++. .|.+||..+.+.......... ...
T Consensus 151 ~~~~~s---------~dg~------------------------l~~-~~~--~i~~~d~~~~~~~~~~~~~~~-~~~--- 190 (349)
T 1jmx_B 151 YLMRAA---------DDGS------------------------LYV-AGP--DIYKMDVKTGKYTVALPLRNW-NRK--- 190 (349)
T ss_dssp CCEEEC---------TTSC------------------------EEE-ESS--SEEEECTTTCCEEEEECSTTC-CCT---
T ss_pred cceeEC---------CCCc------------------------EEE-ccC--cEEEEeCCCCceecccccccc-CCc---
Confidence 788887 7774 444 333 399999876432211110000 000
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE----------
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF---------- 290 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l---------- 290 (601)
....+ ..+.+|...... ... .....+++++++...
T Consensus 191 ----~~~~~---------~~~~~~~~~~~~---------------~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 191 ----GYSAP---------DVLYFWPHQSPR---------------HEF-------SMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp ----TBCCC---------BCCCCCCCCCTT---------------CEE-------EEEEEEEEC-------CCCEEEEEE
T ss_pred ----cccCc---------cceeeecCCCcc---------------eeE-------EeeeeeeecCCCcCCccccccceeE
Confidence 00000 111122211100 000 123345566554221
Q ss_pred -EE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcc
Q 007489 291 -AY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 291 -~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 367 (601)
.. ...+.++++++.. ....+..++|+| |+++++++ ++.|.+||+.+++.+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--- 293 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFAD-----------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--- 293 (349)
T ss_dssp EEEETTTCCEEEEEEEE-----------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred EEEeccCCcEEeccccc-----------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---
Confidence 11 2333444443321 234568899999 99999888 88999999999988877763
Q ss_pred cccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeec
Q 007489 368 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 417 (601)
...+.+++|+||+++|++++.++.|.+||+++++....++.
T Consensus 294 ---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 294 ---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ---------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred ---------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 33477999999999999888899999999999988777664
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=7.8e-21 Score=202.66 Aligned_cols=323 Identities=8% Similarity=0.012 Sum_probs=199.1
Q ss_pred EEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcccccc---ceEEEEEeCCCCEEEEEee---------CCeEEEEEecc
Q 007489 42 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG---DVNALAAAPSHNRVFSTGS---------DGQVILYKASC 109 (601)
Q Consensus 42 ~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~---------dg~i~vw~~~~ 109 (601)
+++|+|||.++..+.|+.|++||+.+++....+.+|.. .|.+++|||||++|++++. |+.|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 67999999666666799999999999987776666554 3899999999999998876 78999999988
Q ss_pred CcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 110 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
++.... ..+ ...+..++|+ |||+ .|+.+.
T Consensus 100 g~~~~~---------------~~l---~~~~~~~~~S---------PDG~------------------------~la~~~ 128 (719)
T 1z68_A 100 GEFVRG---------------NEL---PRPIQYLCWS---------PVGS------------------------KLAYVY 128 (719)
T ss_dssp TEECCS---------------SCC---CSSBCCEEEC---------SSTT------------------------CEEEEE
T ss_pred Cccccc---------------eec---CcccccceEC---------CCCC------------------------EEEEEE
Confidence 762000 122 2467889998 9997 777764
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
++.|++|++.+........ ++ ....++. |...+ +
T Consensus 129 -~~~i~~~~~~~g~~~~l~~--------------------~~-------~~~~v~~--------------g~~~~--v-- 162 (719)
T 1z68_A 129 -QNNIYLKQRPGDPPFQITF--------------------NG-------RENKIFN--------------GIPDW--V-- 162 (719)
T ss_dssp -TTEEEEESSTTSCCEECCC--------------------CC-------BTTTEEE--------------SSCCH--H--
T ss_pred -CCeEEEEeCCCCCcEEEec--------------------CC-------CcCCeEc--------------ccccc--e--
Confidence 7899999987633111000 00 0000000 00000 0
Q ss_pred EEecCCCCeEEEEEcCCCCEEEE-EcC-C---------------------------------ccEEEEeecCCCCcce--
Q 007489 270 VKSKASRKIICSTISNSGMLFAY-SDH-V---------------------------------KPSLFELKKGKVGQGE-- 312 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~-~~~-~---------------------------------~v~l~~~~~~~~~~~~-- 312 (601)
..........+++|||||+.|++ +.+ + .+++|++.. +...
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~---~~~~~~ 239 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY---PAYVGP 239 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC---HHHHCC
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC---CCccce
Confidence 00000022357899999999998 433 3 445555543 1110
Q ss_pred EEEee-ecCCcCccceeEEEEccCCCeEEEEecCC----cEEEEE----cCCCceeeee----ccCcccccccCCCCCCC
Q 007489 313 WIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDR----RIYVVD----VSSSELLHTF----TPCREEHDREIQPSEPP 379 (601)
Q Consensus 313 ~~~~~-~~~~~~~~~v~~i~~s~d~~~l~~~~~dg----~i~vwd----~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 379 (601)
..+.. ..+..+...+..++||||++++++....+ .|.+|| +.+++....+ .. |...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~-----------~~~~ 308 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES-----------RTGW 308 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC-----------SSSC
T ss_pred eEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc-----------CCce
Confidence 00100 11224566789999999987777654332 488999 8777765554 23 5555
Q ss_pred ee-----EEEEccCCCEEEE--EecCC--eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeC-----CCeE
Q 007489 380 IT-----KMFTSSDGQWLAA--VNCFG--DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS-----SNQV 445 (601)
Q Consensus 380 i~-----~l~~spd~~~las--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~-----dg~v 445 (601)
+. .++|||||+.|+. +..+| .|++|++.+++.. .+.. +...+..+.++. + +.|+..+. ++.+
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~-~~~~v~~~~~~d-~-~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITS-GKWEAINIFRVT-Q-DSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSC-SSSCEEEEEEEC-S-SEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-eccc-CceEEEEEEEEe-C-CEEEEEEecCCCCCceE
Confidence 65 7899999996654 44555 5777788777643 3332 234567766663 4 45555544 4788
Q ss_pred EEEEcCC--CCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 446 YVFDVEA--KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 446 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
++|.+.. +.... ..+...+.+|...+..+.|+|+
T Consensus 385 ~l~~~~~~~g~~~~------~~l~~~~~~~~~~~~~~~~s~d 420 (719)
T 1z68_A 385 NIYRISIGSYPPSK------KCVTCHLRKERCQYYTASFSDY 420 (719)
T ss_dssp EEEEEECSSSSCCE------EESSTTTTTTTBCBEEEEECGG
T ss_pred EEEEEeCCCCCCCc------eeccCccCCCCCceEEEEECCC
Confidence 8888764 32100 0011123336667888999998
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=4.9e-21 Score=204.25 Aligned_cols=351 Identities=13% Similarity=0.063 Sum_probs=211.4
Q ss_pred EeeecCCcEEEEECCCCceEEEEEeccCCCCCCCce---EEEEEEEeeCC-eEEEEcC---------CCcEEEeeCCccc
Q 007489 3 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL---CIWSLLSLRCG-TLVSADS---------TGSVQFWDSRHGT 69 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~~g-~l~s~~~---------dg~i~vwd~~~~~ 69 (601)
+..+.|++|++||+.+|+....+. +|.. .|.+++||||| +|++++. ++.|++||+.+++
T Consensus 30 ~~~~~d~~i~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~ 101 (719)
T 1z68_A 30 LHQSADNNIVLYNIETGQSYTILS--------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE 101 (719)
T ss_dssp EEECTTSCEEEEESSSCCEEEEEC--------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEEc--------cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence 444569999999999998876664 3333 38999999999 7887765 7899999999887
Q ss_pred hh--hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccc--------
Q 007489 70 LL--QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD-------- 139 (601)
Q Consensus 70 ~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------- 139 (601)
.+ ..+ ...+.+++|||||+.|+++. |+.|++|++.++...... ..... ...+.+|...
T Consensus 102 ~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~---~~~~~-----~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 102 FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT---FNGRE-----NKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC---CCCBT-----TTEEESSCCHHHHHHTTC
T ss_pred cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe---cCCCc-----CCeEcccccceeeeeccc
Confidence 63 223 25688999999999999885 889999999887631000 00000 0001122211
Q ss_pred -eeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC-CeEEEEeccccCCcCCCccCCCCCcc
Q 007489 140 -VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD-TKLFAYCANEFTKFSPHEICPAPQRV 217 (601)
Q Consensus 140 -v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~v~~~~~~~~~~~~~~~~~~~~~~~ 217 (601)
..+++|+ |||+ .|++++.| +.+.+|.+..... . ..
T Consensus 170 ~~~~~~wS---------PDG~------------------------~la~~~~d~~~~~~~~~~~~~~--~-------~~- 206 (719)
T 1z68_A 170 TKYALWWS---------PNGK------------------------FLAYAEFNDTDIPVIAYSYYGD--E-------QY- 206 (719)
T ss_dssp SSCCEEEC---------TTSS------------------------EEEEEEEECTTSCEEEEEECCS--S-------SS-
T ss_pred CcccEEEC---------CCCC------------------------EEEEEEECCCCCceEEeeccCC--C-------CC-
Confidence 2578888 9987 88877755 3444443322110 0 00
Q ss_pred ceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE-----ecCCCCeEEEEEcCCCCEEEE
Q 007489 218 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK-----SKASRKIICSTISNSGMLFAY 292 (601)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~g~~l~~ 292 (601)
.....+.+...|.. .....+.+|++....... ..++. ..+...+.+++||||++++++
T Consensus 207 --~~~~~~~yp~~g~~--~~~~~l~~~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 207 --PRTINIPYPKAGAK--NPVVRIFIIDTTYPAYVG-------------PQEVPVPAMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp --CEEEEEECCBTTSC--CCEEEEEEEESSCHHHHC-------------CEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred --ccceeecCCCCCCC--CCeeEEEEEECCCCCccc-------------eeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence 11122222221110 011356677766432100 00111 124567899999999887766
Q ss_pred E-cC--C--ccEEEE----eecCCCCcceEEEeeecC----CcCcccee-----EEEEccCCCeEEE--EecCC--cEEE
Q 007489 293 S-DH--V--KPSLFE----LKKGKVGQGEWIINKRQL----PRKLQFAH-----SMIFSYDSSQLII--AGHDR--RIYV 350 (601)
Q Consensus 293 ~-~~--~--~v~l~~----~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~i~~s~d~~~l~~--~~~dg--~i~v 350 (601)
. .. + .|.+|+ +.. +... ..+ ..+...+. .++|+|||+.|+. ...+| .|.+
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~---g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQT---WDCP-----KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSS---EECC-----GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred EeccccCeEEEEEEcccCCCCC---CceE-----EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 3 22 2 366677 332 1111 111 23344454 7899999997655 33455 4777
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEEEEEcCC--ce-EEEEeec-c--C
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVYIFNLEI--QR-QHWFISR-L--E 419 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~iwd~~~--~~-~~~~~~~-~--~ 419 (601)
||+.+++ ...+.. +...+..+.++ +++.|+..+.+ +.+++|.+.. +. ....+.. . +
T Consensus 342 ~~~~~~~-~~~lt~-----------~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~ 408 (719)
T 1z68_A 342 IKDTVEN-AIQITS-----------GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKE 408 (719)
T ss_dssp ESSCSTT-CEECSC-----------SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTT
T ss_pred EECCCCc-eEeccc-----------CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCC
Confidence 7776655 344544 55568888888 88888776654 7888888754 32 1223321 1 3
Q ss_pred CCceeEEEecCCCCCEEEEEe-CC--CeEEEEEcCCCCc
Q 007489 420 GASVTAAGFPPQNNNVLIITT-SS--NQVYVFDVEAKQL 455 (601)
Q Consensus 420 ~~~v~~l~~~p~~~~~l~~~~-~d--g~v~vwd~~~~~~ 455 (601)
...+..+.|+| ++++|+..+ .+ ..+++||+.+++.
T Consensus 409 ~~~~~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 409 RCQYYTASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp TBCBEEEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCceEEEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 34678899999 888777543 32 4789999987764
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=1.2e-20 Score=185.67 Aligned_cols=323 Identities=13% Similarity=0.138 Sum_probs=189.0
Q ss_pred EEEEECCCCceEEEEEeccCCCCCCCceEEEE-----EEEeeCC-eEEEEcC-CC--cEEEeeCCccchhhhccccccce
Q 007489 11 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWS-----LLSLRCG-TLVSADS-TG--SVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 11 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~-----v~~s~~g-~l~s~~~-dg--~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
...+|..+|..+.+++ .|...... ++|+||| +|+.++. +| .|.+||+.+++......+|...+
T Consensus 12 ~~~~~~~~g~~~~~lt--------~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~ 83 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLT--------PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNT 83 (388)
T ss_dssp EEEECTTTCCEEEECS--------CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCS
T ss_pred eEEecCCCCcceEEec--------CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCc
Confidence 3446778898888887 56655665 8999999 7877776 66 48888999888877777777676
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEe--eccccCCCCCCccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV--AVPISREDPLPEDK 159 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~d~~ 159 (601)
..++|+|||+.|+.++.++.|.+||+.+++. ......+...+....+ + |+++
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~-----------------~~~~~~~~~~~~~~~~~~~---------~dg~ 137 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEE-----------------NVVYQVPAEWVGYGTWVAN---------SDCT 137 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCE-----------------EEEEECCTTEEEEEEEEEC---------TTSS
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------eeeeechhhcccccceeEC---------CCCC
Confidence 6789999999999999999999999998763 2222233333333322 3 5554
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.++.... +......... ...........++ .
T Consensus 138 ------------------------~l~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~~~--------~ 168 (388)
T 3pe7_A 138 ------------------------KLVGIEI-------RREDWVPLTD----------WKKFHEFYFTKPC--------C 168 (388)
T ss_dssp ------------------------EEEEEEE-------EGGGCCCCCS----------HHHHHHHGGGCCC--------E
T ss_pred ------------------------eeccccc-------cCcccccccc----------cchhhhhhccCCc--------c
Confidence 4432110 0000000000 0000000000000 2
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEEE-cCC----ccEEEEeecCCCCcceE
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYS-DHV----KPSLFELKKGKVGQGEW 313 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~-~~~----~v~l~~~~~~~~~~~~~ 313 (601)
.+.+|++.... ...+. .+...+..++|+| ||+.|+.. ... ..+||.++.. +...
T Consensus 169 ~l~~~d~~~g~----------------~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~--~~~~- 228 (388)
T 3pe7_A 169 RLMRVDLKTGE----------------STVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED--GTNM- 228 (388)
T ss_dssp EEEEEETTTCC----------------EEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT--SCCC-
T ss_pred eEEEEECCCCc----------------eEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC--CCce-
Confidence 33344443221 11121 2245688999999 99988873 321 3345544431 2221
Q ss_pred EEeeecCCcCc--cceeEEEEccCCCeEEEEecC-C----cEEEEEcCCCceee--eeccCcccccccCCCCCCCeeEEE
Q 007489 314 IINKRQLPRKL--QFAHSMIFSYDSSQLIIAGHD-R----RIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMF 384 (601)
Q Consensus 314 ~~~~~~~~~~~--~~v~~i~~s~d~~~l~~~~~d-g----~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~ 384 (601)
..+..+. ..+..++|+|||+.|+..+.+ + .|++||+.+++... .+..... .......++
T Consensus 229 ----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~--------~~~~~~~~~ 296 (388)
T 3pe7_A 229 ----RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH--------LMSNYDGSL 296 (388)
T ss_dssp ----EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE--------EEECTTSSE
T ss_pred ----EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee--------eeecCCCCe
Confidence 1222222 357788999999988665542 2 39999998887432 2221000 000012237
Q ss_pred EccCCCEEEEE---------ecCCeEEEEEcCCceEEEEeeccCCC-----------ceeEEEecCCCCCEEEEEe-CCC
Q 007489 385 TSSDGQWLAAV---------NCFGDVYIFNLEIQRQHWFISRLEGA-----------SVTAAGFPPQNNNVLIITT-SSN 443 (601)
Q Consensus 385 ~spd~~~las~---------~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~l~~~p~~~~~l~~~~-~dg 443 (601)
|||||++|+.. ..+..|++||+.+++... +.... . .+.+++|+| |++.|+.++ .++
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~-~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g 373 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-VARHD-TSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHG 373 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEEEE-EEECC-CCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE-ecccc-CcccccccccccCCCCccCCC-CCCEEEEEecCCC
Confidence 99999988854 456689999999987643 33222 2 478889999 998888766 456
Q ss_pred eEEEEEcC
Q 007489 444 QVYVFDVE 451 (601)
Q Consensus 444 ~v~vwd~~ 451 (601)
...+|.++
T Consensus 374 ~~~l~~~~ 381 (388)
T 3pe7_A 374 KPALYLAT 381 (388)
T ss_dssp SCEEEEEE
T ss_pred ceeEEEEE
Confidence 55555543
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=7.1e-20 Score=177.20 Aligned_cols=282 Identities=10% Similarity=0.091 Sum_probs=177.7
Q ss_pred EEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccc-cceEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCC
Q 007489 42 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGL 118 (601)
Q Consensus 42 ~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~ 118 (601)
.+++++++ .+++++.++.|.+||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~------ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN------ 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE------
Confidence 35677788 78899999999999999998887776543 2578999999998765 556789999999988653
Q ss_pred CCccccceeEEecCccc-c-----ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC-
Q 007489 119 SSSEVIKKWIYVGSVRA-H-----THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD- 191 (601)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-h-----~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d- 191 (601)
...+.. + ...+..++|+ |||+ .|++++.+
T Consensus 78 -----------~~~~~~~~~~~~~~~~~~~~~~s---------pdg~------------------------~l~~~~~~~ 113 (349)
T 1jmx_B 78 -----------TFHANLSSVPGEVGRSMYSFAIS---------PDGK------------------------EVYATVNPT 113 (349)
T ss_dssp -----------EEEEESCCSTTEEEECSSCEEEC---------TTSS------------------------EEEEEEEEE
T ss_pred -----------EEEEEcccccccccccccceEEC---------CCCC------------------------EEEEEcccc
Confidence 222221 1 2336788888 8887 78877755
Q ss_pred -----------CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCC
Q 007489 192 -----------TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGG 260 (601)
Q Consensus 192 -----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~ 260 (601)
+.|.+||+.+.......
T Consensus 114 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------------------- 141 (349)
T 1jmx_B 114 QRLNDHYVVKPPRLEVFSTADGLEAKPV---------------------------------------------------- 141 (349)
T ss_dssp EECSSCEEECCCEEEEEEGGGGGGBCCS----------------------------------------------------
T ss_pred cccccccccCCCeEEEEECCCcccccee----------------------------------------------------
Confidence 78888887652211110
Q ss_pred CCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCC---------------cC--
Q 007489 261 HASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP---------------RK-- 323 (601)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---------------~~-- 323 (601)
.... +...+.+++|+|+|+ ++++ ++.|.+|++.. +.....+...... ..
T Consensus 142 -------~~~~--~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (349)
T 1jmx_B 142 -------RTFP--MPRQVYLMRAADDGS-LYVA-GPDIYKMDVKT---GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207 (349)
T ss_dssp -------EEEE--CCSSCCCEEECTTSC-EEEE-SSSEEEECTTT---CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred -------eecc--CCCcccceeECCCCc-EEEc-cCcEEEEeCCC---CceeccccccccCCccccCccceeeecCCCcc
Confidence 0111 113466677777777 3332 23377777654 2222111110000 00
Q ss_pred --ccceeEEEEccCCCeEEEEecC-CcEEEEEcCCCcee-eeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecC
Q 007489 324 --LQFAHSMIFSYDSSQLIIAGHD-RRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCF 398 (601)
Q Consensus 324 --~~~v~~i~~s~d~~~l~~~~~d-g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~d 398 (601)
......+++++++......... ..+..++..+++.. ..+.. +...+..++|+| |+++|+++ +
T Consensus 208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg~~l~~~--~ 274 (349)
T 1jmx_B 208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQIYGV--L 274 (349)
T ss_dssp CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTEEEEE--E
T ss_pred eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCCCEEEEE--c
Confidence 0023456666654321111111 11222455444321 11111 455688999999 99999988 8
Q ss_pred CeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 399 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 399 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.|.+||+.+++....+... ..+.+++|+| ++++|++++.++.|.+||+++++.
T Consensus 275 ~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIKAANLD--HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp SEEEEEETTTTEEEEEEECS--SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred CeEEEEECccCeEEEEEcCC--CCccceEECC-CCCEEEEecCCCeEEEEeccccce
Confidence 89999999999887666632 3678999999 998899888899999999988764
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.2e-19 Score=188.33 Aligned_cols=258 Identities=10% Similarity=0.094 Sum_probs=180.2
Q ss_pred chhhhccc-cccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc-cceeEEEe
Q 007489 69 TLLQAHSF-HKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTV 145 (601)
Q Consensus 69 ~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~ 145 (601)
+.++.+.. +..+|++++|+|||++|++++. ||++.||++.++. ...+..|. ..+.+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~------------------~~~lt~~~~~~~~~~~~ 72 (582)
T 3o4h_A 11 RIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE------------------TVKLNREPINSVLDPHY 72 (582)
T ss_dssp HHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE------------------EEECCSSCCSEECEECT
T ss_pred HHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCC------------------cEeeecccccccccccC
Confidence 44444443 3568999999999999998877 9999999997765 33444444 57888888
Q ss_pred eccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC---CCeEEEEeccc--cCCcCCCccCCCCCcccee
Q 007489 146 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD---DTKLFAYCANE--FTKFSPHEICPAPQRVPIH 220 (601)
Q Consensus 146 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~ 220 (601)
+ || + ++++++. +....+|.+.. .....
T Consensus 73 s---------pd-~------------------------~l~~~~~~~g~~~~~l~~~~~~~~g~~~-------------- 104 (582)
T 3o4h_A 73 G---------VG-R------------------------VILVRDVSKGAEQHALFKVNTSRPGEEQ-------------- 104 (582)
T ss_dssp T---------CS-E------------------------EEEEEECSTTSCCEEEEEEETTSTTCCE--------------
T ss_pred C---------CC-e------------------------EEEEeccCCCCcceEEEEEeccCCCccc--------------
Confidence 7 77 5 7776664 33344443321 10000
Q ss_pred eeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC--EEEEEcCCcc
Q 007489 221 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM--LFAYSDHVKP 298 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~v 298 (601)
.+ .....+...+|+|+|+ .++++.++.+
T Consensus 105 ------------------------------------------------~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~ 134 (582)
T 3o4h_A 105 ------------------------------------------------RL--EAVKPMRILSGVDTGEAVVFTGATEDRV 134 (582)
T ss_dssp ------------------------------------------------EC--TTSCSBEEEEEEECSSCEEEEEECSSCE
T ss_pred ------------------------------------------------cc--cCCCCceeeeeCCCCCeEEEEecCCCCc
Confidence 00 0012233557778775 3444666677
Q ss_pred EEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC----CcEEEEEcCCCceeeeeccCcccccccCC
Q 007489 299 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD----RRIYVVDVSSSELLHTFTPCREEHDREIQ 374 (601)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 374 (601)
.+|++.. +... .+. .+.. .+++|||||++|++++.+ +.|++||+.+++.. .+..
T Consensus 135 ~l~d~~~---g~~~-~l~-----~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~---------- 192 (582)
T 3o4h_A 135 ALYALDG---GGLR-ELA-----RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS---------- 192 (582)
T ss_dssp EEEEEET---TEEE-EEE-----EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC----------
T ss_pred eEEEccC---CcEE-Eee-----cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec----------
Confidence 7999975 3221 111 1111 789999999999988877 78999999887754 5555
Q ss_pred CCCCCeeEEEEccCCCEEEEEecCC--eEEEEEcCCceEEEEeeccCCCceeEEE--------ecCCCCCEEEEEeCCCe
Q 007489 375 PSEPPITKMFTSSDGQWLAAVNCFG--DVYIFNLEIQRQHWFISRLEGASVTAAG--------FPPQNNNVLIITTSSNQ 444 (601)
Q Consensus 375 ~~~~~i~~l~~spd~~~las~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~--------~~p~~~~~l~~~~~dg~ 444 (601)
+...+..++|||||++|++++.++ .|++||+++++.. .+.. +...+..++ |+| |+.++++++.|++
T Consensus 193 -~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~ 268 (582)
T 3o4h_A 193 -GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-PSKDFSSYRPTAITWLGYLP-DGRLAVVARREGR 268 (582)
T ss_dssp -SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-SCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTE
T ss_pred -CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-CCcChhhhhhccccceeEcC-CCcEEEEEEcCCc
Confidence 778899999999999999888888 8999999998876 4443 334566666 999 8888899999999
Q ss_pred EEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCC
Q 007489 445 VYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 485 (601)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 485 (601)
+++|++ ++... .+.+.+.+++|+ +
T Consensus 269 ~~l~~~--g~~~~--------------~~~~~v~~~~~s-d 292 (582)
T 3o4h_A 269 SAVFID--GERVE--------------APQGNHGRVVLW-R 292 (582)
T ss_dssp EEEEET--TEEEC--------------CCSSEEEEEEEE-T
T ss_pred EEEEEE--CCeec--------------cCCCceEEEEec-C
Confidence 999999 44211 223578899998 6
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=5.7e-19 Score=170.47 Aligned_cols=290 Identities=11% Similarity=0.080 Sum_probs=192.8
Q ss_pred cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc----------CCCcEEEeeCCccchhhhcc
Q 007489 7 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------STGSVQFWDSRHGTLLQAHS 75 (601)
Q Consensus 7 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~----------~dg~i~vwd~~~~~~~~~~~ 75 (601)
.|+.|.+||..+++.+.++. .+..+ .++|+||| ++++++ .++.|.+||..+++.+.++.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~--------~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP--------TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE--------CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECCCCeEEEEec--------CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 47899999999999998887 45555 89999999 666664 35779999999988887775
Q ss_pred cc------ccceEEEEEeCCCCEEEEEee--CCeEEEEEeccCcCCCCCCCCCccccceeEEecC-ccccccceeEEEee
Q 007489 76 FH------KGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVA 146 (601)
Q Consensus 76 ~h------~~~V~~l~~s~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~ 146 (601)
.. ......++|+|||++|+++.. ++.|.+||+.+++. ... +.. . ....+.+.
T Consensus 99 ~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-----------------~~~~i~~-~-~~~~v~~~ 159 (361)
T 2oiz_A 99 LPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-----------------VEDVTAA-A-GCWSVIPQ 159 (361)
T ss_dssp ECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-----------------EEEEGGG-T-TEEEEEEC
T ss_pred cCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-----------------EEEEecC-C-CcceeEEc
Confidence 32 345678999999999998875 58999999998763 332 221 1 11223343
Q ss_pred ccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccc
Q 007489 147 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 226 (601)
Q Consensus 147 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (601)
|++. ..+++.+.||.+..++........
T Consensus 160 ---------p~~~-----------------------~~~~~~~~dg~~~~v~~~~~g~~~-------------------- 187 (361)
T 2oiz_A 160 ---------PNRP-----------------------RSFMTICGDGGLLTINLGEDGKVA-------------------- 187 (361)
T ss_dssp ---------TTSS-----------------------SEEEEEETTSSEEEEEECTTSSEE--------------------
T ss_pred ---------CCCC-----------------------eeEEEECCCCcEEEEEECCCCcEe--------------------
Confidence 5543 377888889988888875311100
Q ss_pred cCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeec
Q 007489 227 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKK 305 (601)
Q Consensus 227 ~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~ 305 (601)
... ....+|+.... ...+.+++++..++. +.++.+.++++..
T Consensus 188 --------~~~-~~~~~~~~~~~----------------------------~~~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 188 --------SQS-RSKQMFSVKDD----------------------------PIFIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp --------EEE-ECCCCSCTTTS----------------------------CBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred --------eec-cccceEcCCCC----------------------------ceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence 000 00011111100 011112345544444 5667777777753
Q ss_pred CCCCcceEEEeeecCCc--------CccceeEEEEccCCCeEEEEec-----------CCcEEEEEcCCCceeeeeccCc
Q 007489 306 GKVGQGEWIINKRQLPR--------KLQFAHSMIFSYDSSQLIIAGH-----------DRRIYVVDVSSSELLHTFTPCR 366 (601)
Q Consensus 306 ~~~~~~~~~~~~~~~~~--------~~~~v~~i~~s~d~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~ 366 (601)
....+ .....+.. .......++|+|++++++++.. .+.|.+||+.+++.+.++..
T Consensus 231 --~~~~~--~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-- 304 (361)
T 2oiz_A 231 --DEVKV--DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-- 304 (361)
T ss_dssp --SSCEE--EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--
T ss_pred --CCcee--cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--
Confidence 11111 11111100 0111224789999988887654 34799999999999999886
Q ss_pred ccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc--eEEEEeeccCCCceeEEEecCCCCC
Q 007489 367 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 367 ~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
+. +.+++|+|||++|++++. +.|.+||+.++ +....+.. .+..+..++++| +|.
T Consensus 305 ---------~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~-~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 305 ---------RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG-AAEASLQVQFHP-VGG 360 (361)
T ss_dssp ---------TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT-SCSSEEEEEECC-CSC
T ss_pred ---------CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc-CCCCcEEEEecC-CCC
Confidence 54 999999999999998887 99999999999 87766543 456789999999 875
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=1.1e-18 Score=186.03 Aligned_cols=364 Identities=11% Similarity=0.053 Sum_probs=213.3
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC---------CcEEEeeCCccchh
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---------GSVQFWDSRHGTLL 71 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d---------g~i~vwd~~~~~~~ 71 (601)
|+++ ||+|++||+.+|++...+... ....+......++||||| +|+.++.+ +.+.+||+.+++..
T Consensus 31 ~~~~--~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 31 LYKQ--ENNILVFNAEYGNSSVFLENS---TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp EEEE--TTEEEEEETTTCCEEEEECTT---TTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred EEEc--CCcEEEEECCCCceEEEEech---hhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 4554 999999999999987666511 111122233457899999 78877765 56779999988755
Q ss_pred hhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc---------cceeE
Q 007489 72 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT---------HDVRA 142 (601)
Q Consensus 72 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~ 142 (601)
.+..|.+.+..++|||||+.|+.+ .|+.|.+|++.++...... ..... ...+.++. ....+
T Consensus 106 -~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt---~~g~~-----~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 106 -TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT---WTGKE-----DIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp -CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC---SCCBT-----TTEEESBCCHHHHHHTSSSSBC
T ss_pred -EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc---CCCCc-----cceecCcccccccchhcCCCcc
Confidence 466788899999999999999888 5789999999887631000 00000 00011111 12245
Q ss_pred EEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC-eEEEEeccccCCcCCCccCCCCCccceee
Q 007489 143 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHL 221 (601)
Q Consensus 143 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (601)
+.|+ |||+ .|+.++.|. .+.+|++........+ ...
T Consensus 176 ~~wS---------pDg~------------------------~la~~~~d~~~v~~~~~~~~~~~~~~----------~~~ 212 (740)
T 4a5s_A 176 LWWS---------PNGT------------------------FLAYAQFNDTEVPLIEYSFYSDESLQ----------YPK 212 (740)
T ss_dssp EEEC---------TTSS------------------------EEEEEEEECTTCCEEEEEECCSTTCS----------SCE
T ss_pred eEEC---------CCCC------------------------EEEEEEEcccCCceEEEEeecCCCCC----------CCc
Confidence 7887 9987 787776655 4777776432211000 011
Q ss_pred eeccccCCCeEEEEEeCCeeEEeeccc---cCCcccCCCCCCCCCcceEEEEEe-----cCCCCeEEEEEcCCCCEEEE-
Q 007489 222 VHNTIFSHTSLLLVQYSCRLDILSVRL---ENNVESRSSSGGHASTSLLVQVKS-----KASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~g~~l~~- 292 (601)
...+.+...|.. .....+.+|++.. .... ...++.. .+...+..++|||||++++.
T Consensus 213 ~~~~~yp~~G~~--~~~~~l~v~d~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 213 TVRVPYPKAGAV--NPTVKFFVVNTDSLSSVTNA-------------TSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCBTTSC--CCEEEEEEEETTSCCSSSCC-------------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred ceeecCCCCcCc--CCeeEEEEEECCCCCCCCcc-------------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 222223222211 0012567777765 3210 1223322 25567899999999997666
Q ss_pred Ec----CCccEEEEeecCCCCcceEEEee-ecC--CcCccce-----eEEEEccCCCeEE-EEec-C--CcEEEEEcCCC
Q 007489 293 SD----HVKPSLFELKKGKVGQGEWIINK-RQL--PRKLQFA-----HSMIFSYDSSQLI-IAGH-D--RRIYVVDVSSS 356 (601)
Q Consensus 293 ~~----~~~v~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~v-----~~i~~s~d~~~l~-~~~~-d--g~i~vwd~~~~ 356 (601)
.. +..|++|++.. +...|.... ..+ ..+...+ ...+|+|||+.|+ ..+. + ..|++||+..+
T Consensus 278 ~~r~~~~~~i~~~d~~t---g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDE---SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EESSTTEEEEEEEEEET---TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred eCCCCCEEEEEEEECCC---CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 22 23688899886 220000000 001 1222232 3678999999877 6654 3 35888898766
Q ss_pred ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----C--eEEEEEcCCceEEEEeecc---CCCceeEE
Q 007489 357 ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----G--DVYIFNLEIQRQHWFISRL---EGASVTAA 426 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g--~i~iwd~~~~~~~~~~~~~---~~~~v~~l 426 (601)
+.. .+.. ....+..+. ++|++.|+..+.. + .|+..++.++.....+... .......+
T Consensus 355 ~~~-~lT~-----------g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~ 421 (740)
T 4a5s_A 355 DCT-FITK-----------GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSV 421 (740)
T ss_dssp SCE-ESCC-----------SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEE
T ss_pred ceE-eccc-----------CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEE
Confidence 544 3332 344555544 2557766654433 3 4555556655443233311 22468899
Q ss_pred EecCCCCCEEEEEeCC---CeEEEEEcCCCCc
Q 007489 427 GFPPQNNNVLIITTSS---NQVYVFDVEAKQL 455 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~d---g~v~vwd~~~~~~ 455 (601)
.|+| ++++++..... ..+.+++..+++.
T Consensus 422 ~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 422 SFSK-EAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp EECT-TSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred EECC-CCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 9999 99887766543 4788888877643
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=8.2e-19 Score=186.90 Aligned_cols=297 Identities=10% Similarity=0.079 Sum_probs=190.3
Q ss_pred EEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccc-----eEEEEEeCCCCEEEEEeeC---------CeEE
Q 007489 39 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD-----VNALAAAPSHNRVFSTGSD---------GQVI 103 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~~~d---------g~i~ 103 (601)
...+++|+||| +++++ |+.|++||+.+++....+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999 66665 899999999999877777766543 2347889999999988876 5667
Q ss_pred EEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCC
Q 007489 104 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 183 (601)
Q Consensus 104 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (601)
+||+.+++ ...+..|...+...+|+ |||+
T Consensus 96 ~~d~~~~~------------------~~~l~~~~~~~~~~~~S---------PdG~------------------------ 124 (740)
T 4a5s_A 96 IYDLNKRQ------------------LITEERIPNNTQWVTWS---------PVGH------------------------ 124 (740)
T ss_dssp EEETTTTE------------------ECCSSCCCTTEEEEEEC---------SSTT------------------------
T ss_pred EEECCCCc------------------EEEcccCCCcceeeEEC---------CCCC------------------------
Confidence 99999987 34566777889999998 9997
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
.|+.+ .|+.|++|+..+...... ........+..+ ..-|-...
T Consensus 125 ~la~~-~~~~i~~~~~~~~~~~~l------------------t~~g~~~~~~~g---~~~~v~~e--------------- 167 (740)
T 4a5s_A 125 KLAYV-WNNDIYVKIEPNLPSYRI------------------TWTGKEDIIYNG---ITDWVYEE--------------- 167 (740)
T ss_dssp CEEEE-ETTEEEEESSTTSCCEEC------------------CSCCBTTTEEES---BCCHHHHH---------------
T ss_pred EEEEE-ECCeEEEEECCCCceEEE------------------cCCCCccceecC---cccccccc---------------
Confidence 77766 468999999876321100 000000000000 00000000
Q ss_pred cceEEEEEecCCCCeEEEEEcCCCCEEEE-E-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEE
Q 007489 264 TSLLVQVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~ 341 (601)
........+.|||||+.||. . ++..+.+|++...... ..+...+..+.|.+.|..
T Consensus 168 ---------e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~-----------~~~~~~~~~~~yp~~G~~--- 224 (740)
T 4a5s_A 168 ---------EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE-----------SLQYPKTVRVPYPKAGAV--- 224 (740)
T ss_dssp ---------HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----------TCSSCEEEEEECCBTTSC---
T ss_pred ---------hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----------CCCCCcceeecCCCCcCc---
Confidence 00022346789999999998 3 5566888887641110 124456677888877743
Q ss_pred EecCCcEEEEEcCC---Cc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec----CCeEEEEEcCCce--
Q 007489 342 AGHDRRIYVVDVSS---SE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----FGDVYIFNLEIQR-- 410 (601)
Q Consensus 342 ~~~dg~i~vwd~~~---~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~----dg~i~iwd~~~~~-- 410 (601)
.....|++||+.+ ++ ....+.... ....+...+..++|||||++++.... +..|++||+.+++
T Consensus 225 -~~~~~l~v~d~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPA-----SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp -CCEEEEEEEETTSCCSSSCCCEEEECCCH-----HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred -CCeeEEEEEECCCCCCCCcceEEEecCCc-----cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 2223689999988 73 222332110 00015667999999999997776543 3479999999886
Q ss_pred --EE---EEeeccCCCce-----eEEEecCCCCCEEE-EEeC-C--CeEEEEEcCCCCc
Q 007489 411 --QH---WFISRLEGASV-----TAAGFPPQNNNVLI-ITTS-S--NQVYVFDVEAKQL 455 (601)
Q Consensus 411 --~~---~~~~~~~~~~v-----~~l~~~p~~~~~l~-~~~~-d--g~v~vwd~~~~~~ 455 (601)
+. ..+...+...+ ..+.|+| |++.|+ ..+. + ..|++||+.+++.
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 21 11111233333 3788999 999877 6653 3 4788899988764
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=3.4e-18 Score=166.08 Aligned_cols=281 Identities=10% Similarity=0.068 Sum_probs=179.7
Q ss_pred EEeeecC--CcEEEEEC--CCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC-ccchhhhcc
Q 007489 2 LYSGSSD--GYIRSWDA--KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR-HGTLLQAHS 75 (601)
Q Consensus 2 l~tg~~d--g~i~iwd~--~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~-~~~~~~~~~ 75 (601)
|++|+.. +.|.+|++ .+|+....-.... +....+..++|+||| +|++++.+ .|.+||+. ++++.....
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~-----~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEI-----PQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEEC-----CTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEcc-----CCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence 4556653 56888765 4565432211100 233457789999999 78888777 99999997 776654332
Q ss_pred cc-ccceEEEEEeCCCCE--EEEEe-------------eCCeEEEEEecc-CcCCCCCCCCCccccceeEEecCcc----
Q 007489 76 FH-KGDVNALAAAPSHNR--VFSTG-------------SDGQVILYKASC-ESIGPNDGLSSSEVIKKWIYVGSVR---- 134 (601)
Q Consensus 76 ~h-~~~V~~l~~s~~~~~--l~s~~-------------~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 134 (601)
.. .+.+.+++|+|||++ ++++. .++.+.+|++.. +.. ...+.
T Consensus 79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~-----------------~~~~~~~~~ 141 (365)
T 1jof_A 79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL-----------------EKNVQNYEY 141 (365)
T ss_dssp EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE-----------------EEEEEEEEC
T ss_pred eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC-----------------cceEeeEEe
Confidence 11 123567899999994 55553 589999999974 332 11111
Q ss_pred ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC-CCeEEEEecc-ccCCcCCCccCC
Q 007489 135 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCAN-EFTKFSPHEICP 212 (601)
Q Consensus 135 ~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~~~~~~-~~~~~~~~~~~~ 212 (601)
.+...+.+++|+ |||+ .|+++.. ++.|++|++. +.+.
T Consensus 142 ~~~~~~~~~~~s---------pdG~------------------------~l~~~~~~~~~v~~~~~~~~g~~-------- 180 (365)
T 1jof_A 142 QENTGIHGMVFD---------PTET------------------------YLYSADLTANKLWTHRKLASGEV-------- 180 (365)
T ss_dssp CTTCCEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEEEECTTSCE--------
T ss_pred CCCCcceEEEEC---------CCCC------------------------EEEEEcCCCCEEEEEEECCCCCE--------
Confidence 245568888988 8887 6666543 5689999876 2110
Q ss_pred CCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec-CCCCeEEEEEcCCCCEEE
Q 007489 213 APQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK-ASRKIICSTISNSGMLFA 291 (601)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~ 291 (601)
..+..+... +...+..++|+|||++++
T Consensus 181 ----------------------------------------------------~~~~~~~~~~~g~~p~~~~~spdg~~l~ 208 (365)
T 1jof_A 181 ----------------------------------------------------ELVGSVDAPDPGDHPRWVAMHPTGNYLY 208 (365)
T ss_dssp ----------------------------------------------------EEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------EEeeeEecCCCCCCCCEeEECCCCCEEE
Confidence 001111111 235688999999999887
Q ss_pred E-E-cCCccEEEEeecCCCCcceEEEe-eecCCc----Ccc------ceeEEE-EccCCCeEEEEecCC------cEEEE
Q 007489 292 Y-S-DHVKPSLFELKKGKVGQGEWIIN-KRQLPR----KLQ------FAHSMI-FSYDSSQLIIAGHDR------RIYVV 351 (601)
Q Consensus 292 ~-~-~~~~v~l~~~~~~~~~~~~~~~~-~~~~~~----~~~------~v~~i~-~s~d~~~l~~~~~dg------~i~vw 351 (601)
+ + .++.+.+|+++.. .+....... ...++. +.. .+..++ |+|||++|++++.+. .|.+|
T Consensus 209 v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~ 287 (365)
T 1jof_A 209 ALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF 287 (365)
T ss_dssp EEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred EEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence 7 4 4678999998741 122211001 112222 222 478999 999999988776533 89999
Q ss_pred EcC-CCceeee---eccCcccccccCCCCCCCeeEEEEcc---CCCEEEEEecC-CeEEEEEcCCce
Q 007489 352 DVS-SSELLHT---FTPCREEHDREIQPSEPPITKMFTSS---DGQWLAAVNCF-GDVYIFNLEIQR 410 (601)
Q Consensus 352 d~~-~~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~sp---d~~~las~~~d-g~i~iwd~~~~~ 410 (601)
++. ++++... +.. +...+..++|+| ||++|++++.+ +.|.||+++...
T Consensus 288 ~~~~~g~~~~~~~~~~~-----------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 288 KLRDCGSIEKQLFLSPT-----------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EECTTSCEEEEEEEEEC-----------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EECCCCCEEEeeeeeec-----------CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 996 5665432 222 334566789999 89999998864 899999997763
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=6.1e-18 Score=164.24 Aligned_cols=173 Identities=11% Similarity=0.066 Sum_probs=115.8
Q ss_pred CCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEE
Q 007489 275 SRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVV 351 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vw 351 (601)
...+.+++|+|||++++++ .++.|++|++.. .+... .+.....+.+...+..++|+|||++|++++. ++.|.+|
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~--~g~~~-~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~ 220 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVE-LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY 220 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEE-EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECC--CCCEE-EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence 4678999999999988774 457899999972 12211 1112222223456789999999999988775 6899999
Q ss_pred EcC--CCceee---eeccCcccccccCCCCCC------CeeEEE-EccCCCEEEEEecCC------eEEEEEcC-CceEE
Q 007489 352 DVS--SSELLH---TFTPCREEHDREIQPSEP------PITKMF-TSSDGQWLAAVNCFG------DVYIFNLE-IQRQH 412 (601)
Q Consensus 352 d~~--~~~~~~---~~~~~~~~~~~~~~~~~~------~i~~l~-~spd~~~las~~~dg------~i~iwd~~-~~~~~ 412 (601)
++. +++... .+..... ...++.. .+..++ |||||++|++++.+. .|.+|+++ +++..
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 221 VIDPATHMPVYTHHSFPLIPP----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCT----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEeCCCCcEEEccceEEcCCC----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 875 455421 2221100 0001222 588999 999999988776432 89999996 56544
Q ss_pred EE---eeccCCCceeEEEecCC--CCCEEEEEeCC-CeEEEEEcCCCCc
Q 007489 413 WF---ISRLEGASVTAAGFPPQ--NNNVLIITTSS-NQVYVFDVEAKQL 455 (601)
Q Consensus 413 ~~---~~~~~~~~v~~l~~~p~--~~~~l~~~~~d-g~v~vwd~~~~~~ 455 (601)
.. +. .++..+..++|+|. ++++|++++.+ +.|.+|+++...+
T Consensus 297 ~~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 297 KQLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred Eeeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 32 22 23345778899994 48899998864 8999999987643
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1.1e-17 Score=161.45 Aligned_cols=296 Identities=8% Similarity=0.058 Sum_probs=188.0
Q ss_pred CCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe----------eCCeEEEEEeccCcCCCCCCCCCccccc
Q 007489 56 STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPNDGLSSSEVIK 125 (601)
Q Consensus 56 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 125 (601)
.|+.|.+||..+++.+.++..+..+ .++|+|||++++++. .++.|.+||..+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~------------- 93 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF------------- 93 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------------
Confidence 4789999999999988888876665 899999999999886 367899999887653
Q ss_pred eeEEecCccc------cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC--CCeEEEE
Q 007489 126 KWIYVGSVRA------HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD--DTKLFAY 197 (601)
Q Consensus 126 ~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~v~~~ 197 (601)
...+.. +......++++ |||+ +|+++.. ++.|.+|
T Consensus 94 ----~~~i~~~~~~~~~g~~p~~i~~s---------pdg~------------------------~l~v~n~~~~~~v~v~ 136 (361)
T 2oiz_A 94 ----EKEISLPPKRVQGLNYDGLFRQT---------TDGK------------------------FIVLQNASPATSIGIV 136 (361)
T ss_dssp ----EEEEEECTTBCCBCCCGGGEEEC---------TTSS------------------------EEEEEEESSSEEEEEE
T ss_pred ----EEEEEcCccccccCCCcceEEEC---------CCCC------------------------EEEEECCCCCCeEEEE
Confidence 222221 23456778887 8887 7877764 5799999
Q ss_pred eccccCCcCC-CccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCC
Q 007489 198 CANEFTKFSP-HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR 276 (601)
Q Consensus 198 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (601)
|+.+.+.... .. . .
T Consensus 137 d~~~~~~~~~~i~--------------------------------------------------------------~---~ 151 (361)
T 2oiz_A 137 DVAKGDYVEDVTA--------------------------------------------------------------A---A 151 (361)
T ss_dssp ETTTTEEEEEEGG--------------------------------------------------------------G---T
T ss_pred ECCCCcEEEEEec--------------------------------------------------------------C---C
Confidence 9886321100 00 0 0
Q ss_pred CeEEEEEcCCC-CE-EEEEcCCccEEEEeecCCCCcceEEEee-ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEc
Q 007489 277 KIICSTISNSG-ML-FAYSDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 353 (601)
Q Consensus 277 ~i~~~~~s~~g-~~-l~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~ 353 (601)
....+.+.|++ .. ++.+.++.+.++++.. .+........ ..+.....+ ..+.+++++..++..+.++.|.++|+
T Consensus 152 ~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~--~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 152 GCWSVIPQPNRPRSFMTICGDGGLLTINLGE--DGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp TEEEEEECTTSSSEEEEEETTSSEEEEEECT--TSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred CcceeEEcCCCCeeEEEECCCCcEEEEEECC--CCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEe
Confidence 11113344544 22 3336666776666653 1222111110 111111111 23345678888888888999999998
Q ss_pred CCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-----------CCeEEEEEcCCceEEEEeeccCC
Q 007489 354 SSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-----------FGDVYIFNLEIQRQHWFISRLEG 420 (601)
Q Consensus 354 ~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-----------dg~i~iwd~~~~~~~~~~~~~~~ 420 (601)
..... ...+....... ............++|+||++.++++.. .+.|.+||+.+++....++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-- 305 (361)
T 2oiz_A 229 SGDEVKVDGPWSLLNDED-KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-- 305 (361)
T ss_dssp SSSSCEEEEEEESCCHHH-HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--
T ss_pred cCCCceecccccccCccc-cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--
Confidence 65432 22221100000 000000011223789999988877643 358999999999988888753
Q ss_pred CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCC
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSP 486 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 486 (601)
. +.+++|+| ++++|++++. +.|.+||++++++.. ...+..+......++|+|+|
T Consensus 306 ~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~---------~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 306 D-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKL---------LRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp T-CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEE---------EEEETTSCSSEEEEEECCCS
T ss_pred C-eeEEEECC-CCCEEEEeCC-CeEEEEECCCCccee---------eEEeccCCCCcEEEEecCCC
Confidence 3 99999999 9999998887 999999999983211 23444566778999999983
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.9e-18 Score=169.59 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=112.9
Q ss_pred CEEeeecCCcEEEEECCCCc----------eEEEEEeccCCCCCCCceEEEEEEEeeCC-eEE----EEcCCCcEEEeeC
Q 007489 1 MLYSGSSDGYIRSWDAKLGY----------EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV----SADSTGSVQFWDS 65 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~----s~~~dg~i~vwd~ 65 (601)
+|++|+.|+ |+||+..... .+.... ......|...|++++|+|+| +|+ +|+.|+.|+|||+
T Consensus 50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~ 125 (434)
T 2oit_A 50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV---QGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDV 125 (434)
T ss_dssp EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC---CCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEH
T ss_pred EEEEECCCE-EEEEEchHhhhhcccccCcccccccC---ccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEc
Confidence 367788887 8998753210 111100 00001356679999999999 787 7889999999999
Q ss_pred Ccc--------ch---hhhccccccceEEEEEeCC-CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 66 RHG--------TL---LQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 66 ~~~--------~~---~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
.++ +. +..+.+|...|.+++|+|+ +++|++++.||+|++||++++.. ....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----------------~~~~ 188 (434)
T 2oit_A 126 RTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----------------VCAT 188 (434)
T ss_dssp HHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----------------EEEE
T ss_pred cccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----------------eeec
Confidence 765 21 3556679999999999997 89999999999999999988642 3344
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
..|...|.+++|+ |+|+ +|++|+.|+.|++||.+
T Consensus 189 ~~~~~~v~~v~ws---------pdg~------------------------~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 189 LPSTVAVTSVCWS---------PKGK------------------------QLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ECGGGCEEEEEEC---------TTSS------------------------CEEEEETTSCEEEECTT
T ss_pred cCCCCceeEEEEc---------CCCC------------------------EEEEEcCCCcEEEEccC
Confidence 5688999999998 8887 99999999999999987
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=1.1e-16 Score=162.12 Aligned_cols=318 Identities=12% Similarity=0.102 Sum_probs=215.4
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCC--ccchhhhccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQAHSFHK 78 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~ 78 (601)
+++...+++|.++|..+++.+.++.. + ..+..+.|+||| ++++++.++.|.+||+. +++.+.++...
T Consensus 170 ~V~~~~~~~V~viD~~t~~v~~~i~~-------g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 170 SVTLRDAGQIALIDGSTYEIKTVLDT-------G--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEEC-------S--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred EEEeCCCCeEEEEECCCCeEEEEEeC-------C--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence 56777889999999999999999974 2 236689999999 88888899999999995 78877777753
Q ss_pred cceEEEEEe----CCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc----------cccc-ceeE
Q 007489 79 GDVNALAAA----PSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR----------AHTH-DVRA 142 (601)
Q Consensus 79 ~~V~~l~~s----~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~-~v~~ 142 (601)
.....++|+ |||++++++.. +++|.++|..+.+. +..+. .|.. .+.+
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-----------------~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----------------KKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----------------EEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-----------------EEEEeccccccccccccCCCceEE
Confidence 346799999 69999987765 59999999877653 22111 1212 4455
Q ss_pred EEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeee
Q 007489 143 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 222 (601)
Q Consensus 143 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (601)
+..+ +++. ..+++...+|.|.++|......
T Consensus 303 i~~s---------~~~~-----------------------~~vv~~~~~g~v~~vd~~~~~~------------------ 332 (567)
T 1qks_A 303 ILAS---------HYRP-----------------------EFIVNVKETGKILLVDYTDLNN------------------ 332 (567)
T ss_dssp EEEC---------SSSS-----------------------EEEEEETTTTEEEEEETTCSSE------------------
T ss_pred EEEc---------CCCC-----------------------EEEEEecCCCeEEEEecCCCcc------------------
Confidence 5554 4432 2566667778888888764110
Q ss_pred eccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEE
Q 007489 223 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSL 300 (601)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l 300 (601)
+ .+..+ ........+.|+|+|++++++ .+++|.+
T Consensus 333 ------------------~------------------------~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 333 ------------------L------------------------KTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp ------------------E------------------------EEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred ------------------c------------------------eeeee--eccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 0 01111 122456788899999988773 6788999
Q ss_pred EEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEE-EEe-cCCcEEEEEcCC-------CceeeeeccCcccccc
Q 007489 301 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI-IAG-HDRRIYVVDVSS-------SELLHTFTPCREEHDR 371 (601)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~-~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~ 371 (601)
+|+.+ +..+..+.......|...-..+ ++|++..+. ++. .++.|.++|..+ .+.++++..
T Consensus 369 iD~~t---~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~------- 437 (567)
T 1qks_A 369 IDTKE---GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA------- 437 (567)
T ss_dssp EETTT---TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------
T ss_pred EECCC---CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------
Confidence 98875 3333222210112232211122 688755554 443 368999999987 567777765
Q ss_pred cCCCCCCCeeEEEEccCCCEEEEEec-------CCeEEEEEcCCc-----e-EEEEeec-----c--CCCceeEEEecCC
Q 007489 372 EIQPSEPPITKMFTSSDGQWLAAVNC-------FGDVYIFNLEIQ-----R-QHWFISR-----L--EGASVTAAGFPPQ 431 (601)
Q Consensus 372 ~~~~~~~~i~~l~~spd~~~las~~~-------dg~i~iwd~~~~-----~-~~~~~~~-----~--~~~~v~~l~~~p~ 431 (601)
....-..+.++|++++|.+... ...|.|+|+.+. . ....++. . .+..+..+.|+|
T Consensus 438 ----~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 512 (567)
T 1qks_A 438 ----LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK- 512 (567)
T ss_dssp ----SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-
T ss_pred ----CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-
Confidence 2223345789999999988763 458999999877 2 1123431 1 235789999999
Q ss_pred CCCEEEEEe-----CCCeEEEEEcCCCCcc
Q 007489 432 NNNVLIITT-----SSNQVYVFDVEAKQLG 456 (601)
Q Consensus 432 ~~~~l~~~~-----~dg~v~vwd~~~~~~~ 456 (601)
+|+.+.++. .++.|.|+|.++.++.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 998887763 3799999999998753
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=9.7e-19 Score=171.90 Aligned_cols=295 Identities=13% Similarity=0.165 Sum_probs=185.8
Q ss_pred EeeCCccchhhhccccccceEE-----EEEeCCCCEEEEEee-CC--eEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 62 FWDSRHGTLLQAHSFHKGDVNA-----LAAAPSHNRVFSTGS-DG--QVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 62 vwd~~~~~~~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
.+|..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++. ....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------~~lt 76 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------TQLT 76 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------EECC
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------EEee
Confidence 4577778888888877766666 899999999998877 67 478888887763 3333
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~ 213 (601)
..+...+..++|+ ||++ .|+.++.++.|++||+.+.+...
T Consensus 77 ~~~~~~~~~~~~s---------pdg~------------------------~l~~~~~~~~l~~~d~~~g~~~~------- 116 (388)
T 3pe7_A 77 EGRGDNTFGGFLS---------PDDD------------------------ALFYVKDGRNLMRVDLATLEENV------- 116 (388)
T ss_dssp CSSCBCSSSCEEC---------TTSS------------------------EEEEEETTTEEEEEETTTCCEEE-------
T ss_pred eCCCCCccceEEc---------CCCC------------------------EEEEEeCCCeEEEEECCCCccee-------
Confidence 4455555567787 9987 89998888999999987632100
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeE--EEEEcCCCCEEE
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII--CSTISNSGMLFA 291 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~l~ 291 (601)
++. .+...+. ...++|++++++
T Consensus 117 -----------------------------~~~---------------------------~~~~~~~~~~~~~~~dg~~l~ 140 (388)
T 3pe7_A 117 -----------------------------VYQ---------------------------VPAEWVGYGTWVANSDCTKLV 140 (388)
T ss_dssp -----------------------------EEE---------------------------CCTTEEEEEEEEECTTSSEEE
T ss_pred -----------------------------eee---------------------------chhhcccccceeECCCCCeec
Confidence 000 0011111 123366666665
Q ss_pred EE-----------------------cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecC--
Q 007489 292 YS-----------------------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHD-- 345 (601)
Q Consensus 292 ~~-----------------------~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~d-- 345 (601)
.. .+..|.+|++.. +.. ..+..+...+..++|+| ||++|+....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~~------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GES------TVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CCE------EEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECCC---Cce------EEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 31 224566676654 221 11122344678999999 99999887764
Q ss_pred ----CcEEEEEcCCCceeeeeccCcccccccCCCCC--CCeeEEEEccCCCEEEEEec-CC----eEEEEEcCCceEEEE
Q 007489 346 ----RRIYVVDVSSSELLHTFTPCREEHDREIQPSE--PPITKMFTSSDGQWLAAVNC-FG----DVYIFNLEIQRQHWF 414 (601)
Q Consensus 346 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~spd~~~las~~~-dg----~i~iwd~~~~~~~~~ 414 (601)
..|.++|+..++. ..+.. +. ..+..++|||||+.|+..+. ++ .|++||+.+++....
T Consensus 212 ~~~~~~l~~~d~~~~~~-~~l~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNM-RKVKT-----------HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp TTSSCSEEEEETTSCCC-EESCC-----------CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred CCCcceEEEEeCCCCce-EEeee-----------CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 3788888765443 33433 22 35788999999998866543 22 399999999875432
Q ss_pred eeccCC-----CceeEEEecCCCCCEEEEE---------eCCCeEEEEEcCCCCcccchhcccCCcCcccccCCC-----
Q 007489 415 ISRLEG-----ASVTAAGFPPQNNNVLIIT---------TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPG----- 475 (601)
Q Consensus 415 ~~~~~~-----~~v~~l~~~p~~~~~l~~~---------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----- 475 (601)
.. ..+ ..+..+.|+| |++.|+.. ..+..|++||+.+++... +..+..
T Consensus 280 ~~-~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------l~~~~~~~~~~ 345 (388)
T 3pe7_A 280 TS-MPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR------------VARHDTSWKVF 345 (388)
T ss_dssp EE-ECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEEE------------EEECCCCCCCB
T ss_pred Ec-CCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEE------------eccccCccccc
Confidence 22 221 0122237999 88888764 446689999999887533 222332
Q ss_pred ------cEEEEEeCCCCCCCEEEEEc----CceEEEEeCCC
Q 007489 476 ------EVIGLSFSPSPSSSSVIIYS----ARAMCVIDFGR 506 (601)
Q Consensus 476 ------~v~~i~~~p~~~~~~~~~~~----~~~~~~~~~~~ 506 (601)
.+..++|+|| +..+++.+ ...++.+++..
T Consensus 346 ~~~~~~~~~~~~~spD--g~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPD--DKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp TTBSSTTCCCCEECTT--SSEEEEEECTTSSCEEEEEECCG
T ss_pred ccccccCCCCccCCCC--CCEEEEEecCCCceeEEEEECCh
Confidence 5778899999 45555442 33466666543
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=2.9e-18 Score=169.01 Aligned_cols=320 Identities=10% Similarity=0.059 Sum_probs=194.3
Q ss_pred EEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcC---CCcEEEeeCCccchhhhccccccceEEEEE
Q 007489 11 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS---TGSVQFWDSRHGTLLQAHSFHKGDVNALAA 86 (601)
Q Consensus 11 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~---dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~ 86 (601)
....|..+|+.+.++... ....|...+.+++|+||| +|+.... +..|.+||+.+++......++......+.|
T Consensus 12 ~~~~d~~~g~~~~~l~~~---~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 88 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPT---DIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFI 88 (396)
T ss_dssp EEEECTTTCCEEEECSCT---TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEE
T ss_pred heeecCCCCcceEEEecC---CCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceE
Confidence 344588889888887621 011122336788999999 6665533 346888899887755443333333334789
Q ss_pred eCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCC
Q 007489 87 APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 166 (601)
Q Consensus 87 s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~ 166 (601)
+|||++|+.++.++.|.+|++.+++. ......+.. +. ++++
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~~~~-----------------~~~~~~~~~------~~---------~~g~------- 129 (396)
T 3c5m_A 89 STDERAFFYVKNELNLMKVDLETLEE-----------------QVIYTVDEE------WK---------GYGT------- 129 (396)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCE-----------------EEEEECCTT------EE---------EEEE-------
T ss_pred CCCCCEEEEEEcCCcEEEEECCCCCc-----------------EEEEecccc------cC---------CCCC-------
Confidence 99999999999899999999987652 111111221 33 5554
Q ss_pred CccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE-------eCC
Q 007489 167 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ-------YSC 239 (601)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~ 239 (601)
.|+....+....+|.. ...++|++..++. ...
T Consensus 130 -----------------~l~~~~~~~~~~~~~~------------------------~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 130 -----------------WVANSDCTKLVGIEIL------------------------KRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp -----------------EEECTTSSEEEEEEEE------------------------GGGCCCCCSHHHHHHHHHTCCCE
T ss_pred -----------------EEEeccCCcccccccc------------------------ccccCCCCcceeeeeeccCCCcc
Confidence 5666655554444431 2234455443332 123
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEE-EcC------CccEEEEeecCCCCcc
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAY-SDH------VKPSLFELKKGKVGQG 311 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~-~~~------~~v~l~~~~~~~~~~~ 311 (601)
.+.+|++.... ...+. .+...+..+.|+| +++.|+. +.+ ..|.+|++.. +.
T Consensus 169 ~l~~~d~~~g~----------------~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~---~~- 227 (396)
T 3c5m_A 169 RLIKVDIETGE----------------LEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG---SN- 227 (396)
T ss_dssp EEEEEETTTCC----------------EEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS---CC-
T ss_pred eEEEEECCCCc----------------EEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC---Cc-
Confidence 45555554322 11121 2346788999999 7887776 432 3456666542 21
Q ss_pred eEEEeeecCCcC--ccceeEEEEccCCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEE
Q 007489 312 EWIINKRQLPRK--LQFAHSMIFSYDSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF 384 (601)
Q Consensus 312 ~~~~~~~~~~~~--~~~v~~i~~s~d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 384 (601)
. ..+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++....... . ... +.
T Consensus 228 ~-----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------------~-~~~-~~ 288 (396)
T 3c5m_A 228 V-----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM------------P-PCS-HL 288 (396)
T ss_dssp C-----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC------------C-SEE-EE
T ss_pred e-----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC------------C-CCC-CC
Confidence 1 111122 2357889999999988877654 4499999988765433221 1 123 89
Q ss_pred Ecc-CCCEEEEEe----------------cCCeEEEEEcCCceEEEEeeccCCC----------ceeEEEecCCCCCEEE
Q 007489 385 TSS-DGQWLAAVN----------------CFGDVYIFNLEIQRQHWFISRLEGA----------SVTAAGFPPQNNNVLI 437 (601)
Q Consensus 385 ~sp-d~~~las~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~----------~v~~l~~~p~~~~~l~ 437 (601)
|+| ||++|++++ .++.|++||+.+++... +...... .+..++|+| +++.|+
T Consensus 289 ~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 366 (396)
T 3c5m_A 289 MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVL 366 (396)
T ss_dssp EECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECT-TSSEEE
T ss_pred ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEcc-CCCeEE
Confidence 999 999888764 34789999998876542 3322211 256789999 999888
Q ss_pred EEeC-CC--eEEEEEcCCCCc
Q 007489 438 ITTS-SN--QVYVFDVEAKQL 455 (601)
Q Consensus 438 ~~~~-dg--~v~vwd~~~~~~ 455 (601)
.++. ++ .|+++++.+++.
T Consensus 367 ~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 367 FTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEECTTSSCEEEEEECCTTCC
T ss_pred EEecCCCCceEEEEEEccccc
Confidence 7765 44 455556666553
No 170
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=3.4e-18 Score=169.11 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=128.5
Q ss_pred CCCCeEEEEEcCCCCEEE----E-EcCCccEEEEeecCC-----CCcceEEEeeecCCcCccceeEEEEccC-CCeEEEE
Q 007489 274 ASRKIICSTISNSGMLFA----Y-SDHVKPSLFELKKGK-----VGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIA 342 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~----~-~~~~~v~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~i~~s~d-~~~l~~~ 342 (601)
+...|.+++|+|+|++|+ + +.|+.|++|++.... ....+. ....+.+|...|.+++|+|+ +.+|+++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFA--YHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSE--EEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceee--eeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 457799999999999999 5 468999999997620 111211 12445678889999999998 7899999
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC---
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--- 419 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~--- 419 (601)
+.||+|++||+.++..+....+ |...|.+++|+|+|++|++|+.||.|++||++ ++....+....
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~-----------~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLP-----------STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEEC-----------GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred ECCCeEEEEEcCCCcceeeccC-----------CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 9999999999998876655555 77899999999999999999999999999998 44444443221
Q ss_pred ---CCceeEEEecCCCCCEEEEEe-CCC------eEEEEEcCCCC
Q 007489 420 ---GASVTAAGFPPQNNNVLIITT-SSN------QVYVFDVEAKQ 454 (601)
Q Consensus 420 ---~~~v~~l~~~p~~~~~l~~~~-~dg------~v~vwd~~~~~ 454 (601)
...|.+++|++ ++.++++.+ .|| .+++|++...+
T Consensus 237 ~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 237 SDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp TTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred CCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 12799999999 877765543 343 39999998653
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=1.6e-16 Score=167.74 Aligned_cols=303 Identities=10% Similarity=0.009 Sum_probs=185.0
Q ss_pred CCceEEEEEEEeeCC-eEEEE--cCCCcEEEeeCCccchhhhccccccceE---------EEEEe--CCCCE-EEEEee-
Q 007489 35 GPELCIWSLLSLRCG-TLVSA--DSTGSVQFWDSRHGTLLQAHSFHKGDVN---------ALAAA--PSHNR-VFSTGS- 98 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~--~~dg~i~vwd~~~~~~~~~~~~h~~~V~---------~l~~s--~~~~~-l~s~~~- 98 (601)
+|...|..++|++++ .+++. +.++...||....+.....+..|...+. ...|+ |||+. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 578889999999888 66777 6688999999654555566666766666 66666 99998 765543
Q ss_pred CCeEEEEEec--c-CcCCCCCCCCCccccceeEEecCccc-----cccceeEEEeeccccCCCCCCcccccccCCCCccc
Q 007489 99 DGQVILYKAS--C-ESIGPNDGLSSSEVIKKWIYVGSVRA-----HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 170 (601)
Q Consensus 99 dg~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 170 (601)
+..|.+|++. + +. ...+.. |...+.+++|+ |||+
T Consensus 101 ~~~l~~~~~~~~g~~~------------------~~~l~~~~~~~~~~~~~~~~~s---------pDg~----------- 142 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAV------------------PRPLTPVSAVGGGLRWADPVLL---------PERG----------- 142 (662)
T ss_dssp TCCEEEECTTSTTCCC------------------CEECSCCCCSTTCEEEEEEEEE---------TTTT-----------
T ss_pred CCeEEEEcCCCCCCCC------------------CEeccCCccCCCCccccCcEEC---------CCCC-----------
Confidence 4556666655 2 33 223333 56778899999 9997
Q ss_pred cccccccccCCCCEEEEecCC----------CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCe
Q 007489 171 DFSYHKWAHLGVPMLISAGDD----------TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 240 (601)
Q Consensus 171 ~~~~~~~~~~~~~~l~s~~~d----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (601)
.|++++.+ ..|++|++.+......
T Consensus 143 -------------~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------------- 176 (662)
T 3azo_A 143 -------------EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR--------------------------------- 176 (662)
T ss_dssp -------------EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG---------------------------------
T ss_pred -------------EEEEEEecccCCCCCCceeEEEEEECCCCccccC---------------------------------
Confidence 78877765 3566666543100000
Q ss_pred eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcC--------CccEEEEeecCCCCc-
Q 007489 241 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDH--------VKPSLFELKKGKVGQ- 310 (601)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~--------~~v~l~~~~~~~~~~- 310 (601)
.. ...+...+...+..++|||||++|+. +.+ ..|++|++.. .+.
T Consensus 177 --------~~----------------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~--~g~~ 230 (662)
T 3azo_A 177 --------SA----------------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE--DGRF 230 (662)
T ss_dssp --------GG----------------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT--TSCE
T ss_pred --------Cc----------------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC--CCcc
Confidence 00 00000011244667889999999987 433 3688888862 121
Q ss_pred -ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC--cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 311 -GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR--RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 311 -~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
... .....+...+..++|+|||+++++++.++ .|.+||+.+++.......+.... ...-...+..++|+|
T Consensus 231 ~~~~----~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~p~w~~~~~~~~~~~ 303 (662)
T 3azo_A 231 ADTR----TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA---GPLWTPGMRWFAPLA 303 (662)
T ss_dssp EEEE----EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS---CCCCSTTCCSEEECT
T ss_pred cccE----EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc---CccccccCceEeEeC
Confidence 111 11123356788999999999888887788 56667766666544333211000 000011156789999
Q ss_pred CCCEEEEEecCCeEEEE--EcCCceEEEEeeccCCCceeEE-EecCCCCCEEEEEeCCC--eEEEEEcCCCCcccc
Q 007489 388 DGQWLAAVNCFGDVYIF--NLEIQRQHWFISRLEGASVTAA-GFPPQNNNVLIITTSSN--QVYVFDVEAKQLGEW 458 (601)
Q Consensus 388 d~~~las~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~~l~~~~~dg--~v~vwd~~~~~~~~~ 458 (601)
+++++++++. +.++|| |+++++. ..+.. +...+..+ ++++ +.-++++++.+. .|+++|+.+++...+
T Consensus 304 ~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 304 NGLIAVVHGK-GAAVLGILDPESGEL-VDAAG-PWTEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp TSCEEEEEBS-SSCEEEEEETTTTEE-EECCS-SCCEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCEEEEEEEc-CccEEEEEECCCCcE-EEecC-CCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 9999999998 999999 5566653 34443 34466666 5543 322233334443 566777777775444
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=4.8e-16 Score=164.03 Aligned_cols=303 Identities=10% Similarity=0.008 Sum_probs=183.7
Q ss_pred ecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEE---------EEEEe--eCC-e-EEEEcC-CCcEEEeeCC--c-c
Q 007489 6 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW---------SLLSL--RCG-T-LVSADS-TGSVQFWDSR--H-G 68 (601)
Q Consensus 6 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~---------~v~~s--~~g-~-l~s~~~-dg~i~vwd~~--~-~ 68 (601)
+.++...||....+....++. .|...+. +..|+ ||| + |+.++. +..|.+|++. . +
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~ 115 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESAL--------PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA 115 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESS--------CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC
T ss_pred ccCCcEEEEEECCCCCcceeC--------CCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC
Confidence 557889999965555566665 4554454 55565 999 7 665543 5677777765 2 3
Q ss_pred chhhhccc-----cccceEEEEEeCCCCEEEEEeeC----------CeEEEEEecc------CcCCCCCCCCCcccccee
Q 007489 69 TLLQAHSF-----HKGDVNALAAAPSHNRVFSTGSD----------GQVILYKASC------ESIGPNDGLSSSEVIKKW 127 (601)
Q Consensus 69 ~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d----------g~i~vw~~~~------~~~~~~~~~~~~~~~~~~ 127 (601)
....+.. |...+.+++|+|||+.|++++.| ..|.+|++.+ +..
T Consensus 116 -~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------- 179 (662)
T 3azo_A 116 -VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV--------------- 179 (662)
T ss_dssp -CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---------------
T ss_pred -CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---------------
Confidence 3444554 67889999999999999988877 5899999987 442
Q ss_pred EEecCcc-ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC--------eEEEEe
Q 007489 128 IYVGSVR-AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--------KLFAYC 198 (601)
Q Consensus 128 ~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--------~v~~~~ 198 (601)
..+. .+...+..++|+ |||+ .|+.++.++ .|++||
T Consensus 180 ---~~l~~~~~~~~~~~~~S---------pDG~------------------------~la~~~~~~~~~~~~~~~i~~~d 223 (662)
T 3azo_A 180 ---RELSDDAHRFVTGPRLS---------PDGR------------------------QAVWLAWDHPRMPWEGTELKTAR 223 (662)
T ss_dssp ---EESSCSCSSEECCCEEC---------TTSS------------------------EEEEEEECTTCCTTTCEEEEEEE
T ss_pred ---eEEEecCCCcccCceEC---------CCCC------------------------EEEEEECCCCCCCCCCcEEEEEE
Confidence 2333 445667778887 9987 777666442 566666
Q ss_pred cc-ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCC
Q 007489 199 AN-EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 277 (601)
Q Consensus 199 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (601)
+. +.. ......+...+...
T Consensus 224 ~~~~g~------------------------------------------------------------~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 224 VTEDGR------------------------------------------------------------FADTRTLLGGPEEA 243 (662)
T ss_dssp ECTTSC------------------------------------------------------------EEEEEEEEEETTBC
T ss_pred ECCCCc------------------------------------------------------------ccccEEeCCCCCce
Confidence 54 110 00122233333567
Q ss_pred eEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCcc--------ceeEEEEccCCCeEEEEecCCcE
Q 007489 278 IICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--------FAHSMIFSYDSSQLIIAGHDRRI 348 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~i~~s~d~~~l~~~~~dg~i 348 (601)
+..++|+|||++++++ .++..+||.++.. .+. .. .....+.. .+..++|+|+++++++++. +.+
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~-~~~-~~----~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPA-TGA-AT----QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTT-TCC-EE----ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECC-CCc-ee----ecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 8899999999966664 5666677766541 122 10 11111111 1567899999999999998 999
Q ss_pred EEE--EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCE--EEEEecCC--eEEEEEcCCceEEEEeeccCCCc
Q 007489 349 YVV--DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW--LAAVNCFG--DVYIFNLEIQRQHWFISRLEGAS 422 (601)
Q Consensus 349 ~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~--las~~~dg--~i~iwd~~~~~~~~~~~~~~~~~ 422 (601)
+|| |+.+++ +..+.. +...+..+. +++++. +++++.+. .|.++|+.+++... +...+...
T Consensus 317 ~l~~~d~~~~~-~~~l~~-----------~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~~~~ 382 (662)
T 3azo_A 317 VLGILDPESGE-LVDAAG-----------PWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRART-IGARHTDP 382 (662)
T ss_dssp EEEEEETTTTE-EEECCS-----------SCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEE-EESCCCCS
T ss_pred EEEEEECCCCc-EEEecC-----------CCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEE-eecCCccc
Confidence 999 555454 566665 666677661 445553 34445554 46666777776543 33233223
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEEc
Q 007489 423 VTAAGFPPQNNNVLIITTSSNQVYVFDV 450 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~dg~v~vwd~ 450 (601)
+....+.+ ...+.+.+..+..|..|-.
T Consensus 383 ~~~~~~~~-~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 383 VDPAYYPE-PQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp SCGGGSCC-CEEEEEECTTSCEEEEEEE
T ss_pred CCccccCc-ceEEEEEcCCCCEEEEEEE
Confidence 33333443 2222232223335555543
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=5.5e-15 Score=138.24 Aligned_cols=252 Identities=10% Similarity=0.130 Sum_probs=167.3
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
++-..+.+++++++++++++...++.|.+|+...... ..+........+...+..+++. .
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~------------~~~~~~~~~~~~~~~p~~i~~~--------~ 86 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK------------FQFGECGKRDSQLLYPNRVAVV--------R 86 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE------------EEECCBSSSTTCBSSEEEEEEE--------T
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE------------EEecccCCCcccccCceEEEEE--------c
Confidence 4566789999999999888888899999999764321 0000000112344567777773 0
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecC-CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
+++. ++++... ++.|.+|+... .
T Consensus 87 ~~g~------------------------l~v~~~~~~~~i~~~d~~g-~------------------------------- 110 (286)
T 1q7f_A 87 NSGD------------------------IIVTERSPTHQIQIYNQYG-Q------------------------------- 110 (286)
T ss_dssp TTTE------------------------EEEEECGGGCEEEEECTTS-C-------------------------------
T ss_pred CCCe------------------------EEEEcCCCCCEEEEECCCC-c-------------------------------
Confidence 3443 4555433 77888887432 0
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~ 313 (601)
.+..+...+...+.+++++++|+++++. .++.|.+|+.. +..+.
T Consensus 111 -------------------------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~ 155 (286)
T 1q7f_A 111 -------------------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLH 155 (286)
T ss_dssp -------------------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEE
T ss_pred -------------------------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC----CCEEE
Confidence 0111111122457889999999977774 56788888753 33322
Q ss_pred EEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 314 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 314 ~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
.+ ....+...+..++++++|+++++...++.|++||.. ++.+..+.... +...+..++++|+|++++
T Consensus 156 ~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g---------~~~~p~~i~~d~~G~l~v 222 (286)
T 1q7f_A 156 KF---GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG---------ITNYPIGVGINSNGEILI 222 (286)
T ss_dssp EE---ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT---------TSCSEEEEEECTTCCEEE
T ss_pred Ee---CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC---------ccCCCcEEEECCCCCEEE
Confidence 11 122334567899999999877777778999999974 66666665411 235789999999999888
Q ss_pred EEecCC-eEEEEEcCCceEEEEeecc-CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 394 AVNCFG-DVYIFNLEIQRQHWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 394 s~~~dg-~i~iwd~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
+...++ .|.+|+.+. +....+... ....+.+++++| +++++++ +.|+.|++|++....
T Consensus 223 ~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 223 ADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred EeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 888776 999999754 444444432 223478999999 8876666 679999999987643
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=4.3e-15 Score=138.95 Aligned_cols=246 Identities=13% Similarity=0.118 Sum_probs=170.8
Q ss_pred CCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcc------ccccceEEEEEe-CCCCEEEEEee-CCe
Q 007489 31 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS------FHKGDVNALAAA-PSHNRVFSTGS-DGQ 101 (601)
Q Consensus 31 ~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~------~h~~~V~~l~~s-~~~~~l~s~~~-dg~ 101 (601)
+...++...+.+++++++| .+++...++.|.+||.. ++.+..+. +|...+.+++++ ++++.+++... ++.
T Consensus 23 g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 23 GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 3344677889999999999 67777888999999987 66555543 345678999995 66766666543 889
Q ss_pred EEEEEeccCcCCCCCCCCCccccceeEEecCc-cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccC
Q 007489 102 VILYKASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 180 (601)
Q Consensus 102 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (601)
|.+|+.. +.. ...+ ..+...+..+++. ++++
T Consensus 102 i~~~d~~-g~~-----------------~~~~~~~~~~~~~~i~~~---------~~g~--------------------- 133 (286)
T 1q7f_A 102 IQIYNQY-GQF-----------------VRKFGATILQHPRGVTVD---------NKGR--------------------- 133 (286)
T ss_dssp EEEECTT-SCE-----------------EEEECTTTCSCEEEEEEC---------TTSC---------------------
T ss_pred EEEECCC-CcE-----------------EEEecCccCCCceEEEEe---------CCCC---------------------
Confidence 9999943 331 1222 1234567888887 7775
Q ss_pred CCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCC
Q 007489 181 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGG 260 (601)
Q Consensus 181 ~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~ 260 (601)
++++...++.|.+|+....
T Consensus 134 ---l~v~~~~~~~i~~~~~~g~---------------------------------------------------------- 152 (286)
T 1q7f_A 134 ---IIVVECKVMRVIIFDQNGN---------------------------------------------------------- 152 (286)
T ss_dssp ---EEEEETTTTEEEEECTTSC----------------------------------------------------------
T ss_pred ---EEEEECCCCEEEEEcCCCC----------------------------------------------------------
Confidence 7777777889999885420
Q ss_pred CCCcceEEEEEe-cCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCe
Q 007489 261 HASTSLLVQVKS-KASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 338 (601)
Q Consensus 261 ~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~ 338 (601)
.+..+.. .+...+..++++++|+++++ ..++.|++|+.. +..+.. ....++...+..++++++|++
T Consensus 153 -----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~---~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 153 -----VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE----GQYLRQ---IGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp -----EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT----CCEEEE---ESCTTTSCSEEEEEECTTCCE
T ss_pred -----EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC----CCEEEE---EccCCccCCCcEEEECCCCCE
Confidence 0001100 11245789999999997777 467899999864 333221 222233456789999999988
Q ss_pred EEEEecCC-cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc
Q 007489 339 LIIAGHDR-RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 339 l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~ 409 (601)
+++...++ .|.+||. +++.+..+.... ....+.+++++|+|+++++ +.+++|++|++...
T Consensus 221 ~v~~~~~~~~i~~~~~-~g~~~~~~~~~~---------~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQ-DGQLISALESKV---------KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECSSSCEEEEECT-TSCEEEEEEESS---------CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEeCCCCEEEEEECC-CCCEEEEEcccC---------CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 88877775 9999995 477777776521 2335789999999987777 67999999997653
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=8.9e-16 Score=146.50 Aligned_cols=257 Identities=11% Similarity=0.073 Sum_probs=173.1
Q ss_pred CceEEEEEEEeeCC-eEEEEcCC------------------------CcEEEeeCCccchhhhcc-ccccceEEEEEeCC
Q 007489 36 PELCIWSLLSLRCG-TLVSADST------------------------GSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPS 89 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~~ 89 (601)
..+.+.+|+++|+| .+++...+ +.|.+||..+++.+..+. ++-..+..++++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 34679999999999 66666666 479999999898776554 44567899999999
Q ss_pred CCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCc---------cccccceeEEEeeccccCCCCCC-ccc
Q 007489 90 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV---------RAHTHDVRALTVAVPISREDPLP-EDK 159 (601)
Q Consensus 90 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~~~~~~-d~~ 159 (601)
|+.+++...++.|++|+....... +..+ ..+......++++ | ++.
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~----------------~~~~~~~~~~g~~~~~~~~P~~ia~~---------~~~g~ 156 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGP----------------LLILGRSMQPGSDQNHFCQPTDVAVE---------PSTGA 156 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCC----------------SEEESBTTBCCCSTTCCSSEEEEEEC---------TTTCC
T ss_pred CCEEEEECCCCEEEEEeCCCCeEE----------------EEEecccCCCCCCccccCCCcEEEEe---------CCCCe
Confidence 998888888999999998654210 1111 2344567888887 7 554
Q ss_pred ccccCCCCccccccccccccCCCCEEEEec-CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
++++.+ .++.|++|+... . ++..
T Consensus 157 ------------------------lyv~d~~~~~~I~~~~~~g-~-----------------------------~~~~-- 180 (329)
T 3fvz_A 157 ------------------------VFVSDGYCNSRIVQFSPSG-K-----------------------------FVTQ-- 180 (329)
T ss_dssp ------------------------EEEEECSSCCEEEEECTTS-C-----------------------------EEEE--
T ss_pred ------------------------EEEEeCCCCCeEEEEcCCC-C-----------------------------EEEE--
Confidence 777776 688999998432 0 0000
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC-CCEEEE-EcCCccEEEEeecCCCCcceEEEe
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS-GMLFAY-SDHVKPSLFELKKGKVGQGEWIIN 316 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~ 316 (601)
+........ ... .+......++++|+ +.++++ ..++.|++|+... +..+.
T Consensus 181 -----~~~~g~~~~----~~~-------------~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G~~~~--- 232 (329)
T 3fvz_A 181 -----WGEESSGSS----PRP-------------GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---KEFVR--- 232 (329)
T ss_dssp -----ECEECCSSS----CCT-------------TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---CCEEE---
T ss_pred -----eccCCCCCC----CCC-------------cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---CcEEE---
Confidence 000000000 000 00144789999998 666666 4778899999863 33331
Q ss_pred eecCCcCccceeEEEEcc------CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 317 KRQLPRKLQFAHSMIFSY------DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 317 ~~~~~~~~~~v~~i~~s~------d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
......+...+..++|+| +|+.+++...+..|++|+..+++.+..+.... .+...+..|+++|+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~--------~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR--------KHFDMPHDIVASEDGT 304 (329)
T ss_dssp EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS--------SCCSSEEEEEECTTSE
T ss_pred EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC--------CccCCeeEEEECCCCC
Confidence 222334455778899999 33333333345589999999999988875211 1667799999999998
Q ss_pred EEEEEecCCeEEEEEcCCc
Q 007489 391 WLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~ 409 (601)
++++...+++|++|+++..
T Consensus 305 lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEESSSCCEEEEEEEEC
T ss_pred EEEEECCCCEEEEEeCCcc
Confidence 8888888999999998653
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=3.7e-14 Score=143.64 Aligned_cols=339 Identities=15% Similarity=0.110 Sum_probs=209.6
Q ss_pred eCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEec--cCcCCCCCCCCCccc
Q 007489 47 RCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS--CESIGPNDGLSSSEV 123 (601)
Q Consensus 47 ~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~ 123 (601)
|.+ .+++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +.+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~----------- 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----------- 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------
Confidence 445 677888899999999999999888874 3356799999999999999999999999995 4432
Q ss_pred cceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec-CCCeEEEEecccc
Q 007489 124 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEF 202 (601)
Q Consensus 124 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~~~~~~ 202 (601)
...+.. ....+.++|+.-.. |||+ ++++++ .++.|.++|..+.
T Consensus 233 ------v~~i~~-G~~P~~ia~s~~~~-----pDGk------------------------~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 233 ------VAEIKI-GSEARSIETSKMEG-----WEDK------------------------YAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp ------EEEEEC-CSEEEEEEECCSTT-----CTTT------------------------EEEEEEEETTEEEEEETTTC
T ss_pred ------eEEEec-CCCCceeEEccccC-----CCCC------------------------EEEEEEccCCeEEEEECCCC
Confidence 333332 33457888860000 2776 555555 4579999997763
Q ss_pred CCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 007489 203 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 282 (601)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 282 (601)
+.+...... .. ..+.. .......+..+.
T Consensus 277 ~~~~~i~~~------------~~-------------------~~~~~---------------------~~~p~~rva~i~ 304 (567)
T 1qks_A 277 EPKKIQSTR------------GM-------------------TYDEQ---------------------EYHPEPRVAAIL 304 (567)
T ss_dssp CEEEEEECC------------EE-------------------CTTTC---------------------CEESCCCEEEEE
T ss_pred cEEEEEecc------------cc-------------------ccccc---------------------cccCCCceEEEE
Confidence 321110000 00 00000 000013566777
Q ss_pred EcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCCCcee
Q 007489 283 ISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELL 359 (601)
Q Consensus 283 ~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~~~~~ 359 (601)
.++++..+++ ...+.|.+++... ... ..+.... .......+.|+|+++++++++ .++.|.++|+.+++++
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~---~~~-~~v~~i~---~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTD---LNN-LKTTEIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTC---SSE-EEEEEEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEecCC---Ccc-ceeeeee---ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 8887766555 3567777777654 111 1122111 123456889999999987766 4789999999999887
Q ss_pred eeecc-CcccccccCCCCCCCeeEEEEccCCCEE-EEEe-cCCeEEEEEcCC-------ceEEEEeeccCCCceeEEEec
Q 007489 360 HTFTP-CREEHDREIQPSEPPITKMFTSSDGQWL-AAVN-CFGDVYIFNLEI-------QRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 360 ~~~~~-~~~~~~~~~~~~~~~i~~l~~spd~~~l-as~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~l~~~ 429 (601)
..+.. .. ..|.+.-..+ ++|++..+ +++. .++.|.++|.++ .+....++.. +..-..+..+
T Consensus 378 ~~i~vgg~-------~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~ 448 (567)
T 1qks_A 378 AIEDTGGQ-------TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTH 448 (567)
T ss_dssp EEEECSSS-------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECC
T ss_pred EEEeccCc-------CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeC
Confidence 76653 11 0143322222 68875544 4443 468999999987 5666666643 3333457789
Q ss_pred CCCCCEEEEEeC-------CCeEEEEEcCCCCcccchhcccCCcC-cc---cccCCCcEEEEEeCCCCCCCEEEE--Ec-
Q 007489 430 PQNNNVLIITTS-------SNQVYVFDVEAKQLGEWSMQHTFVLP-RR---YQEFPGEVIGLSFSPSPSSSSVII--YS- 495 (601)
Q Consensus 430 p~~~~~l~~~~~-------dg~v~vwd~~~~~~~~~~~~~~~~~~-~~---~~~~~~~v~~i~~~p~~~~~~~~~--~~- 495 (601)
| ++++|.+... .++|.|||+.+.+...-... ...++ .. +......+..+.|+|+ +..+|+ |+
T Consensus 449 p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~~s~~~~ 524 (567)
T 1qks_A 449 P-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE-FKTLPIAEWAGITEGQPRVVQGEFNKD--GTEVWFSVWNG 524 (567)
T ss_dssp T-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC-EEEECHHHHHTCCSSCCEEEEEEECTT--SSEEEEEEECC
T ss_pred C-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCC-cEEeccccccccCCCCcceEeeeECCC--CCEEEEEeecC
Confidence 9 9999988763 45899999987621000000 00011 11 1112357899999999 556664 43
Q ss_pred ---CceEEEEeCC
Q 007489 496 ---ARAMCVIDFG 505 (601)
Q Consensus 496 ---~~~~~~~~~~ 505 (601)
.+.+.++|..
T Consensus 525 ~~~~~~i~v~D~~ 537 (567)
T 1qks_A 525 KDQESALVVVDDK 537 (567)
T ss_dssp TTSCCEEEEEETT
T ss_pred CCCCCcEEEEECC
Confidence 5788888854
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3e-15 Score=142.79 Aligned_cols=164 Identities=11% Similarity=0.078 Sum_probs=118.8
Q ss_pred CCeEEEEEcC-CCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecC-----CcCccceeEEEEccC-CCeEEEEecCC
Q 007489 276 RKIICSTISN-SGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQL-----PRKLQFAHSMIFSYD-SSQLIIAGHDR 346 (601)
Q Consensus 276 ~~i~~~~~s~-~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~s~d-~~~l~~~~~dg 346 (601)
..+..++++| ++.++++. .++.|++|+.. +..+..+..... ..+......++++|+ +.++++...++
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~----g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS----GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSSCCEEEEECTT----SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC----CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 4688999999 78888884 47889999843 333332221111 123345789999998 66667767788
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc------CCCEEEEEecCCeEEEEEcCCceEEEEeec--c
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS------DGQWLAAVNCFGDVYIFNLEIQRQHWFISR--L 418 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------d~~~las~~~dg~i~iwd~~~~~~~~~~~~--~ 418 (601)
.|++|+..+++.+..+.... +...+..++|+| +|+..++...+..|++|++.+++....+.. .
T Consensus 219 ~I~~~~~~~G~~~~~~~~~~---------~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~ 289 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHAS---------FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK 289 (329)
T ss_dssp EEEEEETTTCCEEEEECCTT---------TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS
T ss_pred EEEEEECCCCcEEEEEeccc---------cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC
Confidence 99999998899888886432 567788999999 333222333455899999999988777642 2
Q ss_pred CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 419 EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+...+..++++| ++.++++...++.|++|+++..
T Consensus 290 ~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 290 HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 335789999999 9977788888999999998754
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=8.1e-15 Score=140.47 Aligned_cols=264 Identities=8% Similarity=-0.033 Sum_probs=171.3
Q ss_pred eeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceE
Q 007489 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 82 (601)
Q Consensus 4 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~ 82 (601)
..+.++.++.| .++....+. .+...+.+++|+|+| .++++..++.|.+||..+++.......+...+.
T Consensus 22 ~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 90 (333)
T 2dg1_A 22 PIISESELQTI---TAEPWLEIS--------KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA 90 (333)
T ss_dssp CCCCGGGSCEE---ECEEEEEEE--------SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE
T ss_pred EEeecccCccc---ccceeEEEe--------ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc
Confidence 34567788999 466677776 566678999999999 566788899999999988776544435667899
Q ss_pred EEEEeCCCCEEEEEeeC----CeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 83 ALAAAPSHNRVFSTGSD----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 83 ~l~~s~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
+++++++|+++++...+ +.|.+|+..++... . ... ...+...+..+++. |++
T Consensus 91 ~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~--~~~-~~~~~~~~~~i~~d---------~~g 146 (333)
T 2dg1_A 91 AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ------------D--IIE-DLSTAYCIDDMVFD---------SKG 146 (333)
T ss_dssp EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE------------E--EEC-SSSSCCCEEEEEEC---------TTS
T ss_pred eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE------------E--EEc-cCccCCcccceEEC---------CCC
Confidence 99999999988877666 68999998876530 0 000 01234567788887 777
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecC------CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeE
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGD------DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 232 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (601)
+ ++++... .+.|+.++..+.
T Consensus 147 ~------------------------l~v~~~~~~~~~~~~~l~~~~~~~~------------------------------ 172 (333)
T 2dg1_A 147 G------------------------FYFTDFRGYSTNPLGGVYYVSPDFR------------------------------ 172 (333)
T ss_dssp C------------------------EEEEECCCBTTBCCEEEEEECTTSC------------------------------
T ss_pred C------------------------EEEEeccccccCCCceEEEEeCCCC------------------------------
Confidence 5 5555443 233444443210
Q ss_pred EEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCc
Q 007489 233 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 233 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~ 310 (601)
.+..+. .....+..++++|+|+.+.+ ..++.|.+|++.. .+.
T Consensus 173 ---------------------------------~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~--~g~ 216 (333)
T 2dg1_A 173 ---------------------------------TVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED--DGV 216 (333)
T ss_dssp ---------------------------------CEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT--TSS
T ss_pred ---------------------------------EEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC--CCc
Confidence 000110 11134778999999986655 3567899999864 122
Q ss_pred ceEEEee---ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 311 GEWIINK---RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 311 ~~~~~~~---~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
.+..+.. .....+ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..++...+.+++|+|
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-----~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-----DEGHMLRSTHPQFIP 289 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-----GGTCSCBCCEEEECT
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-----ccccccCcceEEECC
Confidence 2211110 112222 35688999999998887777889999998 4666666654110 000223689999999
Q ss_pred CCCEEEEEecCC
Q 007489 388 DGQWLAAVNCFG 399 (601)
Q Consensus 388 d~~~las~~~dg 399 (601)
|++.|+.++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 988877666553
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=3.7e-16 Score=153.86 Aligned_cols=310 Identities=13% Similarity=0.149 Sum_probs=186.9
Q ss_pred EeeCCccchhhhccccccc-----eEEEEEeCCCCEEEEEeeC---CeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 62 FWDSRHGTLLQAHSFHKGD-----VNALAAAPSHNRVFSTGSD---GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 62 vwd~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
..|..+++.+..+..+... +.+++|+|||++|+....+ ..|.+|++.+++. ..+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------~~l 75 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------VQL 75 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------EEC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------EEe
Confidence 4477777766666654333 7789999999998866443 3688888877652 222
Q ss_pred cccccc-eeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCC
Q 007489 134 RAHTHD-VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICP 212 (601)
Q Consensus 134 ~~h~~~-v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~ 212 (601)
..+... ...+.|+ |||+ .|+.++.++.|++|++.+........
T Consensus 76 ~~~~~~~~~~~~~s---------pdg~------------------------~l~~~~~~~~l~~~d~~~~~~~~~~~--- 119 (396)
T 3c5m_A 76 TEGKGDNTFGGFIS---------TDER------------------------AFFYVKNELNLMKVDLETLEEQVIYT--- 119 (396)
T ss_dssp CCSSCBCTTTCEEC---------TTSS------------------------EEEEEETTTEEEEEETTTCCEEEEEE---
T ss_pred ecCCCCccccceEC---------CCCC------------------------EEEEEEcCCcEEEEECCCCCcEEEEe---
Confidence 222222 2235666 8887 88888888899999987632110000
Q ss_pred CCCccceeeeeccccCCCeEEEEEeCCe--eEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 007489 213 APQRVPIHLVHNTIFSHTSLLLVQYSCR--LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 290 (601)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 290 (601)
. ...+++++..++..... ..+| ...+.++|+++.+
T Consensus 120 ~----------~~~~~~~g~~l~~~~~~~~~~~~---------------------------------~~~~~~spdg~~~ 156 (396)
T 3c5m_A 120 V----------DEEWKGYGTWVANSDCTKLVGIE---------------------------------ILKRDWQPLTSWE 156 (396)
T ss_dssp C----------CTTEEEEEEEEECTTSSEEEEEE---------------------------------EEGGGCCCCCSHH
T ss_pred c----------ccccCCCCCEEEeccCCcccccc---------------------------------ccccccCCCCcce
Confidence 0 01134455544433211 1111 0123478898877
Q ss_pred EEE------cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc-CCCeEEEEecC------CcEEEEEcCCCc
Q 007489 291 AYS------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHD------RRIYVVDVSSSE 357 (601)
Q Consensus 291 ~~~------~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-d~~~l~~~~~d------g~i~vwd~~~~~ 357 (601)
+.. .+..|++|++.. +... .+ ..+...+..+.|+| +++.|+..+.+ ..|.+||+..++
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~---g~~~-~~-----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIET---GELE-VI-----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTT---CCEE-EE-----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred eeeeeccCCCcceEEEEECCC---CcEE-ee-----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 763 344566777654 2221 11 12345678999999 88877776653 358888987554
Q ss_pred eeeeeccCcccccccCCCC-CCCeeEEEEccCCCEEEEEecC-----CeEEEEEcCCceEEEEeeccCCCceeEEEecCC
Q 007489 358 LLHTFTPCREEHDREIQPS-EPPITKMFTSSDGQWLAAVNCF-----GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 431 (601)
.. .+... . ...+..++|||||++|+.++.+ +.|++||+.+++..... ...+ .. +.|+|.
T Consensus 228 ~~-~l~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~--~~-~~~s~~ 292 (396)
T 3c5m_A 228 VR-KIKEH----------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP--CS-HLMSNF 292 (396)
T ss_dssp CE-ESSCC----------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS--EE-EEEECS
T ss_pred ee-Eeecc----------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC--CC-CCccCC
Confidence 32 22221 1 2357889999999988877654 45999999988764332 2222 23 788873
Q ss_pred CCCEEEEEe----------------CCCeEEEEEcCCCCcccchhcccCCcCcccccCCC-----------cEEEEEeCC
Q 007489 432 NNNVLIITT----------------SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPG-----------EVIGLSFSP 484 (601)
Q Consensus 432 ~~~~l~~~~----------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~i~~~p 484 (601)
++++|++++ .+..|++||+.+++... +..+.. .+..++|+|
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~s~ 360 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK------------LCKHSTSWDVLDGDRQITHPHPSFTP 360 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE------------EEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE------------ccCCCCccccccccccCCCCCceEcc
Confidence 566777654 34789999998876432 222222 256678999
Q ss_pred CCCCCEEEEEc----CceEEEEeCCC
Q 007489 485 SPSSSSVIIYS----ARAMCVIDFGR 506 (601)
Q Consensus 485 ~~~~~~~~~~~----~~~~~~~~~~~ 506 (601)
+ +..|++.+ ...++.+++..
T Consensus 361 d--g~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 361 N--DDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp T--SSEEEEEECTTSSCEEEEEECCT
T ss_pred C--CCeEEEEecCCCCceEEEEEEcc
Confidence 8 45555443 22466666654
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=3.7e-15 Score=142.84 Aligned_cols=287 Identities=14% Similarity=0.090 Sum_probs=187.5
Q ss_pred eEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC
Q 007489 38 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 116 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 116 (601)
..|++++|++++ .++..+.++.++.| .++....+..+...+.+++|+++|+.++++..++.|.+|+..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---- 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---- 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE----
Confidence 347888999998 77777889999999 3555666777777889999999999888888899999999887652
Q ss_pred CCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC----C
Q 007489 117 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD----T 192 (601)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~ 192 (601)
......+...+.+++++ ++++ ++++...+ +
T Consensus 79 -------------~~~~~~~~~~~~~i~~~---------~dg~------------------------l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 79 -------------KRPFVSHKANPAAIKIH---------KDGR------------------------LFVCYLGDFKSTG 112 (333)
T ss_dssp -------------EEEEECSSSSEEEEEEC---------TTSC------------------------EEEEECTTSSSCC
T ss_pred -------------EEEeeCCCCCcceEEEC---------CCCc------------------------EEEEeCCCCCCCc
Confidence 11112355678999987 7776 77766655 5
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|.+||..+..... +.. ..
T Consensus 113 ~i~~~d~~~~~~~~------------------------------------~~~-------------------------~~ 131 (333)
T 2dg1_A 113 GIFAATENGDNLQD------------------------------------IIE-------------------------DL 131 (333)
T ss_dssp EEEEECTTSCSCEE------------------------------------EEC-------------------------SS
T ss_pred eEEEEeCCCCEEEE------------------------------------EEc-------------------------cC
Confidence 78888876421000 000 00
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcC-----CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE-ecCC
Q 007489 273 KASRKIICSTISNSGMLFAYSDH-----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDR 346 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~~~~-----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~-~~dg 346 (601)
.....+.+++++|+|+++++... ....||.++.. +..+..+. .....+..++|+|++++|+++ +.++
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~~~~-----~~~~~~~~i~~~~dg~~l~v~~~~~~ 204 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPII-----QNISVANGIALSTDEKVLWVTETTAN 204 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEEE-----EEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEEEee-----cCCCcccceEECCCCCEEEEEeCCCC
Confidence 01245788999999988777542 24566666541 11221111 112346889999999866555 4578
Q ss_pred cEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCC-----
Q 007489 347 RIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG----- 420 (601)
Q Consensus 347 ~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----- 420 (601)
.|.+||+.+ +..+..+..... .... ....+..++++++|+++++...++.|.+||.+ ++....+.....
T Consensus 205 ~i~~~d~~~~g~~~~~~~~~~~---~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~ 279 (333)
T 2dg1_A 205 RLHRIALEDDGVTIQPFGATIP---YYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHM 279 (333)
T ss_dssp EEEEEEECTTSSSEEEEEEEEE---EECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCS
T ss_pred eEEEEEecCCCcCcccccceEE---EecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccc
Confidence 999999863 433322210000 0000 11467889999999988888888999999985 444444442211
Q ss_pred CceeEEEecCCCCCEEEEEeCCC------eEEEEEcC
Q 007489 421 ASVTAAGFPPQNNNVLIITTSSN------QVYVFDVE 451 (601)
Q Consensus 421 ~~v~~l~~~p~~~~~l~~~~~dg------~v~vwd~~ 451 (601)
..+.+++|+| +++.|++++.++ .|+.+++.
T Consensus 280 ~~~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 280 LRSTHPQFIP-GTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp CBCCEEEECT-TSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred cCcceEEECC-CCCEEEEEeCccCCCCCceEEEEecc
Confidence 1589999999 887777666553 45555554
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=8.5e-15 Score=141.22 Aligned_cols=285 Identities=8% Similarity=0.079 Sum_probs=170.3
Q ss_pred ceEEEEEEEeeCC-eEEEEc---------CCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeC---Ce--
Q 007489 37 ELCIWSLLSLRCG-TLVSAD---------STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQ-- 101 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~---------~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~-- 101 (601)
...+..+++ || +++... .++.|.+||+.+++.. .+ ..+.+++|+|||++|+.++.+ +.
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 345777778 77 665431 2678999999977643 23 568899999999999987754 33
Q ss_pred EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCC
Q 007489 102 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 181 (601)
Q Consensus 102 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (601)
|.+|++.+++. ..+..+.. +..++|+ |||+
T Consensus 87 l~~~~~~~g~~------------------~~l~~~~~-~~~~~ws---------pdg~---------------------- 116 (347)
T 2gop_A 87 IWVADLETLSS------------------KKILEAKN-IRSLEWN---------EDSR---------------------- 116 (347)
T ss_dssp EEEEETTTTEE------------------EEEEEESE-EEEEEEC---------TTSS----------------------
T ss_pred EEEEECCCCce------------------EEEEcCCC-ccceeEC---------CCCC----------------------
Confidence 77777776552 22333333 8889998 8887
Q ss_pred CCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE-eCCeeEEeeccccCCcccCCCCCC
Q 007489 182 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ-YSCRLDILSVRLENNVESRSSSGG 260 (601)
Q Consensus 182 ~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~i~~~~~~~~~~~~~~~~~ 260 (601)
.|+.++.+. ..... ...+..+.+..++.-+.. ....+.+|++....
T Consensus 117 --~l~~~~~~~-------~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---------- 163 (347)
T 2gop_A 117 --KLLIVGFKR-------REDED--------------FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---------- 163 (347)
T ss_dssp --EEEEEEECC-------CC-----------------------CCCC---------CEEEEEEEETTTTE----------
T ss_pred --EEEEEEccC-------CCcCC--------------cEEEcccceeecCcccccCccceEEEEECCCCe----------
Confidence 666665431 00000 001112222222221111 11345556554322
Q ss_pred CCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cC------C-ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEE
Q 007489 261 HASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DH------V-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 332 (601)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~------~-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 332 (601)
.+..+.. . .+..++|+||| +++++ .+ . ...||.++. +. ...+. .+ ..+..+
T Consensus 164 -----~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~~-~~~l~-----~~-~~~~~~-- 222 (347)
T 2gop_A 164 -----VIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---GK-EEKMF-----EK-VSFYAV-- 222 (347)
T ss_dssp -----EEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---TE-EEEEE-----EE-ESEEEE--
T ss_pred -----EEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---Cc-eEEec-----cC-cceeeE--
Confidence 1123332 2 67889999999 66654 22 1 456776662 21 11111 11 233333
Q ss_pred ccCCCeEEEEecC--------CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeE-EEEccCCCEEEEEecCCeEEE
Q 007489 333 SYDSSQLIIAGHD--------RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQWLAAVNCFGDVYI 403 (601)
Q Consensus 333 s~d~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spd~~~las~~~dg~i~i 403 (601)
+|||++|+.++.+ ..|.+|| +++....... +...+.. +.|+ |+ ++++++.++.++|
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-----------VDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-----------CCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-----------CCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 9999999887754 3678887 5554433333 5677886 9999 88 8899999999999
Q ss_pred EEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeE-EEEEcCCCC
Q 007489 404 FNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV-YVFDVEAKQ 454 (601)
Q Consensus 404 wd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v-~vwd~~~~~ 454 (601)
| +.+++....+. . ...|.+++|+| .++++++.++.. .+|.++ ++
T Consensus 288 ~-~~~g~~~~~~~-~-~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 288 Y-IWDGEIKPIAK-G-RHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp E-EESSSEEEEEC-S-SSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS
T ss_pred E-EcCCceEEEec-C-CCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc
Confidence 9 88666543333 2 45789999987 577777777654 777776 54
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=6e-13 Score=125.17 Aligned_cols=282 Identities=7% Similarity=0.052 Sum_probs=185.8
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh-hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
.+...++++++.++| .+++...++.|.+||.. ++... .+..+...+.+++++++|..+++...++.|..|+... ..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~ 89 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II 89 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE
Confidence 455679999999999 55555557899999988 65432 1223456789999999999888877788999998752 21
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
. ...+......+..+++. +++. ++++...++
T Consensus 90 ------------~----~~~~~~~~~~~~~i~~~---------~~g~------------------------l~v~~~~~~ 120 (299)
T 2z2n_A 90 ------------K----EYTLPNPDSAPYGITEG---------PNGD------------------------IWFTEMNGN 120 (299)
T ss_dssp ------------E----EEECSSTTCCEEEEEEC---------TTSC------------------------EEEEETTTT
T ss_pred ------------E----EEeCCCcCCCceeeEEC---------CCCC------------------------EEEEecCCc
Confidence 0 01111234567788876 6665 777766778
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|..|+... . +..+.. .
T Consensus 121 ~i~~~d~~g-~-------------------------------------~~~~~~-------------------------~ 137 (299)
T 2z2n_A 121 RIGRITDDG-K-------------------------------------IREYEL-------------------------P 137 (299)
T ss_dssp EEEEECTTC-C-------------------------------------EEEEEC-------------------------S
T ss_pred eEEEECCCC-C-------------------------------------EEEecC-------------------------C
Confidence 888887621 0 000000 0
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEE
Q 007489 273 KASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 351 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vw 351 (601)
.....+..++++++|+++++. ..+.+..|+. . +... ..........+..++++++|+++++...++.|.+|
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~---g~~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-S---GDIT----EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-T---CCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C---CcEE----EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 012457888999999877774 4567777776 2 2211 11223334567899999999877766667899999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee-ccCCCceeEEEecC
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS-RLEGASVTAAGFPP 430 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p 430 (601)
|. +++... +.... +...+.+++++++|+++++...++.|.+||.. ++.. .+. ..+...+.++++ +
T Consensus 210 ~~-~g~~~~-~~~~~---------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~~~~~~~~~~~~i~~-~ 275 (299)
T 2z2n_A 210 TT-SGEITE-FKIPT---------PNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-EYPIQIKSAEPHGICF-D 275 (299)
T ss_dssp CT-TCCEEE-EECSS---------TTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-EEECSSSSCCEEEEEE-C
T ss_pred CC-CCcEEE-EECCC---------CCCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-EEeCCCCCCccceEEe-c
Confidence 98 666432 32111 45678999999999977776678899999984 4432 222 122357899999 8
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 431 QNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
++.++++.. .+.|..++.++++
T Consensus 276 -~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 276 -GETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp -SSCEEEEET-TTEEEEEEEC---
T ss_pred -CCCEEEEec-CCcEEEEEcCccc
Confidence 887666554 6778888887754
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=4.3e-14 Score=132.78 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=167.1
Q ss_pred hhhccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccc
Q 007489 71 LQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 149 (601)
Q Consensus 71 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 149 (601)
+..+..+.....+++|+|+|+ .++++..++.|..|+..++ . ..+..+...+.+++++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------~~~~~~~~~~~~l~~~--- 77 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------SPEMHPSHHQNGHCLN--- 77 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------EEEESSCSSEEEEEEC---
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------EEEECCCCCcceeeEC---
Confidence 344555566778999999998 7778888999999998875 2 2233456678899987
Q ss_pred cCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCC
Q 007489 150 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 229 (601)
Q Consensus 150 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (601)
++|+ ++++...++.|.+||..+....
T Consensus 78 ------~dg~------------------------l~v~~~~~~~i~~~d~~~g~~~------------------------ 103 (296)
T 3e5z_A 78 ------KQGH------------------------LIACSHGLRRLERQREPGGEWE------------------------ 103 (296)
T ss_dssp ------TTCC------------------------EEEEETTTTEEEEECSTTCCEE------------------------
T ss_pred ------CCCc------------------------EEEEecCCCeEEEEcCCCCcEE------------------------
Confidence 8876 7777777789999987542100
Q ss_pred CeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE----c-----------
Q 007489 230 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS----D----------- 294 (601)
Q Consensus 230 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~----------- 294 (601)
.+. . .........+..++++|+|+++++. .
T Consensus 104 -------------~~~-~---------------------~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~ 148 (296)
T 3e5z_A 104 -------------SIA-D---------------------SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM 148 (296)
T ss_dssp -------------EEE-C---------------------EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred -------------EEe-e---------------------ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence 000 0 0000001345678889999888762 1
Q ss_pred -CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC-CCce---eeeeccCcccc
Q 007489 295 -HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSEL---LHTFTPCREEH 369 (601)
Q Consensus 295 -~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~-~~~~---~~~~~~~~~~~ 369 (601)
.+.-.||.+... + .+. .+.........++|+|+++.+++.+.++.|.+|++. +++. ...+..
T Consensus 149 ~~~~~~l~~~~~~--g-~~~-----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~----- 215 (296)
T 3e5z_A 149 ELPGRWVFRLAPD--G-TLS-----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV----- 215 (296)
T ss_dssp CSSSCEEEEECTT--S-CEE-----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-----
T ss_pred cCCCcEEEEECCC--C-CEE-----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-----
Confidence 012367777651 2 221 112234456889999999999777778999999986 5554 334421
Q ss_pred cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEe-cCCCCCEEEEEeCCCeEEEE
Q 007489 370 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF-PPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~-~p~~~~~l~~~~~dg~v~vw 448 (601)
+...+..++++++|+++++. ++.|.+|+.+ ++....+... .. +++++| .| +++.|++++.+ .+.-+
T Consensus 216 ------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~-d~~~L~v~t~~-~l~~~ 282 (296)
T 3e5z_A 216 ------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGP-EGRTLYMTVST-EFWSI 282 (296)
T ss_dssp ------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEEST-TSCEEEEEETT-EEEEE
T ss_pred ------CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECC-CCCEEEEEcCC-eEEEE
Confidence 44556789999999977666 7889999987 5555555543 33 899999 58 88888888876 46677
Q ss_pred EcCCCCc
Q 007489 449 DVEAKQL 455 (601)
Q Consensus 449 d~~~~~~ 455 (601)
+.+++++
T Consensus 283 ~~~~~~~ 289 (296)
T 3e5z_A 283 ETNVRGL 289 (296)
T ss_dssp ECSCCBC
T ss_pred Ecccccc
Confidence 7777664
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=3.5e-14 Score=135.12 Aligned_cols=286 Identities=7% Similarity=-0.025 Sum_probs=180.3
Q ss_pred ecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEE
Q 007489 6 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 85 (601)
Q Consensus 6 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~ 85 (601)
+.+++|.+||.++++....+..... .+........+++..+..+++...++.|.+||..+++.+.++. .......++
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n--~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRAN--GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHH--SSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhc--CcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 3488999999999987665421100 0112234567777533366677778999999999999988885 356789999
Q ss_pred EeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccc-----ccceeEEEeeccccCCCCCCcccc
Q 007489 86 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH-----THDVRALTVAVPISREDPLPEDKV 160 (601)
Q Consensus 86 ~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~~~~~d~~~ 160 (601)
++++++.+++...++.|.+||..+++. ...+... ......+++. ++
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~-----------------~~~i~~g~~~~~~~~p~~i~~~----------~~-- 141 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEI-----------------TGYIECPDMDMESGSTEQMVQY----------GK-- 141 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEE-----------------EEEEECTTCCTTTCBCCCEEEE----------TT--
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeE-----------------EEEEEcCCccccCCCcceEEEE----------CC--
Confidence 999985444444789999999988663 1111111 1133444432 12
Q ss_pred cccCCCCccccccccccccCCCCEEEEec-CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 161 KRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
..+++.. .++.|.++|+.+.+.
T Consensus 142 ----------------------~lyv~~~~~~~~v~viD~~t~~~----------------------------------- 164 (328)
T 3dsm_A 142 ----------------------YVYVNCWSYQNRILKIDTETDKV----------------------------------- 164 (328)
T ss_dssp ----------------------EEEEEECTTCCEEEEEETTTTEE-----------------------------------
T ss_pred ----------------------EEEEEcCCCCCEEEEEECCCCeE-----------------------------------
Confidence 1344433 477888888775221
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC-----------CccEEEEeecCCC
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH-----------VKPSLFELKKGKV 308 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----------~~v~l~~~~~~~~ 308 (601)
+.++.. ......++++|+|++++++.. +.|.++|..+
T Consensus 165 ---------------------------~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--- 212 (328)
T 3dsm_A 165 ---------------------------VDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--- 212 (328)
T ss_dssp ---------------------------EEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT---
T ss_pred ---------------------------EEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC---
Confidence 111111 123456778899987776422 5677777654
Q ss_pred CcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc-
Q 007489 309 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS- 387 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp- 387 (601)
+... ....++. ......++|+|++++|+++.. .|.+||..+++........ ........++++|
T Consensus 213 ~~v~---~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~---------~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 213 FTVE---KQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLE---------FRDTKYYGLTVNPN 277 (328)
T ss_dssp TEEE---EEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBC---------CCSSCEEEEEECTT
T ss_pred CeEE---EEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeec---------CCCCceEEEEEcCC
Confidence 2221 1122221 125689999999999988765 8999999887753211110 0245688999999
Q ss_pred CCCEEEEE----ecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 388 DGQWLAAV----NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 388 d~~~las~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
+++++++. ..++.|.+||.+ ++....++. +..+..++|-.
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~~~~~~ 321 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV--GIIPGAFCWKL 321 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE--EESEEEEEEEC
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe--ccCcceEEEec
Confidence 55555565 578999999998 777777664 34567777753
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.65 E-value=6.1e-14 Score=132.76 Aligned_cols=284 Identities=13% Similarity=0.031 Sum_probs=188.5
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc----------CCCcEEEeeCCccchhhhccc
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------STGSVQFWDSRHGTLLQAHSF 76 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~----------~dg~i~vwd~~~~~~~~~~~~ 76 (601)
++.|.+.|..+++.+.++..+ .. + . ++++||| +++.++ .++.|.+||..+++.+.++.-
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG-------~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v 127 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGG-------FL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 127 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEEC-------SS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECC-------CC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence 679999999999999999863 22 2 3 8999999 665544 367899999999998877753
Q ss_pred c-------ccceEEEEEeCCCCEEEEEee--CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeec
Q 007489 77 H-------KGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 147 (601)
Q Consensus 77 h-------~~~V~~l~~s~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 147 (601)
. ......++|+|||++++.+.. ++.|.++|+.+++. ...+... .. ...+
T Consensus 128 ~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-----------------v~tI~v~--g~-~~~~-- 185 (386)
T 3sjl_D 128 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-----------------KRMLDVP--DC-YHIF-- 185 (386)
T ss_dssp TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-----------------EEEEECC--SE-EEEE--
T ss_pred CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-----------------EEEEECC--Cc-ceee--
Confidence 2 124567999999999998864 68999999999764 3333211 11 1112
Q ss_pred cccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeecccc
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF 227 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (601)
|.+. ..+++.+.||.+.+.++........ .
T Consensus 186 --------P~g~-----------------------~~~~~~~~DG~~~~v~~~~~g~v~~-~------------------ 215 (386)
T 3sjl_D 186 --------PTAP-----------------------DTFFMHCRDGSLAKVAFGTEGTPEI-T------------------ 215 (386)
T ss_dssp --------EEET-----------------------TEEEEEETTSCEEEEECCSSSCCEE-E------------------
T ss_pred --------cCCC-----------------------ceeEEECCCCCEEEEECCCCCeEEE-e------------------
Confidence 3332 3677888899888888764211100 0
Q ss_pred CCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeE-EEEE-cCCCCEEEEEcCCccEEEEeec
Q 007489 228 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII-CSTI-SNSGMLFAYSDHVKPSLFELKK 305 (601)
Q Consensus 228 ~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~-s~~g~~l~~~~~~~v~l~~~~~ 305 (601)
. . .+.+.. ...+. ..+| .++|+++..+.++.++++|+..
T Consensus 216 ---------~--~-~~~~~~---------------------------~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 216 ---------H--T-EVFHPE---------------------------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 256 (386)
T ss_dssp ---------E--C-CCCSCT---------------------------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred ---------e--c-ceeccc---------------------------cccccccceeEcCCCcEEEEeCCCEEEEEECCC
Confidence 0 0 000000 01110 1234 4678777777788888888864
Q ss_pred CCCCcceEEEeeecC--------CcCccceeEEEEccCCCeEEEEec----------CCcEEEEEcCCCceeeeeccCcc
Q 007489 306 GKVGQGEWIINKRQL--------PRKLQFAHSMIFSYDSSQLIIAGH----------DRRIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 306 ~~~~~~~~~~~~~~~--------~~~~~~v~~i~~s~d~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~ 367 (601)
. ...+ .....+ .-.......++++++++++++... .+.|.++|+.+++.++.+..
T Consensus 257 ~--~~~v--~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--- 329 (386)
T 3sjl_D 257 G--DAKF--LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--- 329 (386)
T ss_dssp S--SCEE--CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---
T ss_pred C--ccee--ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---
Confidence 1 1111 111110 001224456788999999888753 25799999999999998874
Q ss_pred cccccCCCCCCCeeEEEEccCCC-EEEEEe-cCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 368 EHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 368 ~~~~~~~~~~~~i~~l~~spd~~-~las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
...+..|++++|++ +|++.. .++.|.++|..+++....++.. .....|.+++
T Consensus 330 ---------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~--~~p~~l~~s~ 383 (386)
T 3sjl_D 330 ---------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL--GHGPQVITTA 383 (386)
T ss_dssp ---------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC--CSSCCEEEEC
T ss_pred ---------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC--CCCceeEECC
Confidence 34688999999997 666654 5899999999999998887754 3566777777
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=3e-13 Score=127.04 Aligned_cols=268 Identities=9% Similarity=0.011 Sum_probs=165.3
Q ss_pred CceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEE
Q 007489 19 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 96 (601)
Q Consensus 19 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 96 (601)
+..+..+. .+.....+++|+|+| .++++..++.|..||..++ ...+..+...+.+++++++|+++++.
T Consensus 17 ~~~~~~l~--------~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 17 GAEARRLA--------DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACS 86 (296)
T ss_dssp TCCCEEEE--------CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEE
T ss_pred CCcEEEEe--------cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEe
Confidence 44555665 456668899999999 4678888999999999876 56666677889999999999988877
Q ss_pred eeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcc-ccccceeEEEeeccccCCCCCCcccccccCCCCcccccccc
Q 007489 97 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 175 (601)
Q Consensus 97 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 175 (601)
..++.|.+|+..+++.. .. ..... .....+..+++. |+|+
T Consensus 87 ~~~~~i~~~d~~~g~~~------------~~--~~~~~~~~~~~~~~i~~d---------~~G~---------------- 127 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWE------------SI--ADSFEGKKLNSPNDVCLA---------PDGS---------------- 127 (296)
T ss_dssp TTTTEEEEECSTTCCEE------------EE--ECEETTEECCCCCCEEEC---------TTSC----------------
T ss_pred cCCCeEEEEcCCCCcEE------------EE--eeccCCCCCCCCCCEEEC---------CCCC----------------
Confidence 77789999998776520 00 00000 112234566666 6665
Q ss_pred ccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccC
Q 007489 176 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 255 (601)
Q Consensus 176 ~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~ 255 (601)
++++....+....+... .... ..+...||.++...
T Consensus 128 --------l~vtd~~~g~~~~~~~~-----~~~~---------------------------~~~~~~l~~~~~~g----- 162 (296)
T 3e5z_A 128 --------LWFSDPTYGIDKPEEGY-----GGEM---------------------------ELPGRWVFRLAPDG----- 162 (296)
T ss_dssp --------EEEEECSHHHHCGGGSS-----CCCC---------------------------CSSSCEEEEECTTS-----
T ss_pred --------EEEECCccccccccccc-----cccc---------------------------cCCCcEEEEECCCC-----
Confidence 55552211100000000 0000 00011222222110
Q ss_pred CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc
Q 007489 256 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 334 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~ 334 (601)
.+.. ...+......++|+|+|+.+++ ..++.|.+|++.. .+...- ..... ..+...+..+++++
T Consensus 163 ----------~~~~-~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~--~g~~~~-~~~~~-~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 163 ----------TLSA-PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA--RGETEY-QGVHF-TVEPGKTDGLRVDA 227 (296)
T ss_dssp ----------CEEE-EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS--SSCEEE-EEEEE-CCSSSCCCSEEEBT
T ss_pred ----------CEEE-eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC--CCcCcC-CCeEe-eCCCCCCCeEEECC
Confidence 0111 1223456788999999998855 3567899999863 122100 01111 22344567899999
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEE-ccCCCEEEEEecCCeEEEEEcCCceE
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT-SSDGQWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-spd~~~las~~~dg~i~iwd~~~~~~ 411 (601)
+|+++++. ++.|.+||.. ++.+..+.. +.. +++++| +|+++.|++++.++ +.-++..+.+.
T Consensus 228 ~G~l~v~~--~~~v~~~~~~-g~~~~~~~~-----------~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPD-GDELGRVLT-----------PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp TSCEEEEE--TTEEEEECTT-SCEEEEEEC-----------SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred CCCEEEEc--CCeEEEECCC-CCEEEEEEC-----------CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 99866655 7889999976 777777775 455 899999 68999999888764 66666666553
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.2e-13 Score=127.20 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=165.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCc-eEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccc-
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE-LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH- 77 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h- 77 (601)
+|++++.|+.|.+||.++|+.+.++. .+. ..+.+++++|+| .|+ +.++.|..||. +|+.+..+..+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~--------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYP--------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEE--------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeC--------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 47899999999999999999999998 343 467889999999 555 45778999999 79999888864
Q ss_pred ccceEEEEEeCCCCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEe--cCccccccceeEEEeeccccCCCC
Q 007489 78 KGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYV--GSVRAHTHDVRALTVAVPISREDP 154 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~ 154 (601)
...+.++.+.++|+++++.+. ++.|..++... +. .|... .....+......+++.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~-------------l~~~~~~~~~~~~~~~~~~v~~~-------- 133 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKG-EV-------------LSKTEFETGIERPHAQFRQINKN-------- 133 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CE-------------EEEEEECCSCSSGGGSCSCCEEC--------
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCCC-CE-------------EEEEeccCCCCcccccccCceEC--------
Confidence 357889999999999999877 77777777533 21 12211 1111111223333443
Q ss_pred CCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEE
Q 007489 155 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL 234 (601)
Q Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (601)
++|. ++++...++.|..||... +
T Consensus 134 -~~G~------------------------~lv~~~~~~~v~~~d~~G-~------------------------------- 156 (276)
T 3no2_A 134 -KKGN------------------------YLVPLFATSEVREIAPNG-Q------------------------------- 156 (276)
T ss_dssp -TTSC------------------------EEEEETTTTEEEEECTTS-C-------------------------------
T ss_pred -CCCC------------------------EEEEecCCCEEEEECCCC-C-------------------------------
Confidence 5665 889998899999998762 2
Q ss_pred EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceE
Q 007489 235 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEW 313 (601)
Q Consensus 235 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~ 313 (601)
.+|.+... ..+.++...++|++++++ .++.|..++..+ +..+|
T Consensus 157 -------~~w~~~~~--------------------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t---G~~~w 200 (276)
T 3no2_A 157 -------LLNSVKLS--------------------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLES---NRIVR 200 (276)
T ss_dssp -------EEEEEECS--------------------------SCCCEEEECTTSCEEEECBTTSEEEEECTTT---CCEEE
T ss_pred -------EEEEEECC--------------------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcC---CcEEE
Confidence 12332211 234456778899988884 555677777664 88889
Q ss_pred EEeeecCCc-CccceeEEEEccCCCeEEEEecC--------CcEEEEEc-CCCceeeeeccC
Q 007489 314 IINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHD--------RRIYVVDV-SSSELLHTFTPC 365 (601)
Q Consensus 314 ~~~~~~~~~-~~~~v~~i~~s~d~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~~~ 365 (601)
++....+.+ ....+..++..++|..+++.... +..+++++ .+++.+.++...
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred EecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 887544332 23457888999999888876421 23456666 578888888764
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=2.8e-12 Score=120.59 Aligned_cols=281 Identities=9% Similarity=0.046 Sum_probs=186.5
Q ss_pred ccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCC
Q 007489 76 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 155 (601)
Q Consensus 76 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 155 (601)
.+...+.+++++++|+.+++...++.|.+|+.. +.. . ......+...+.++++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------------~-~~~~~~~~~~~~~i~~~--------- 65 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------------T-EYPLPTPDAKVMCLTIS--------- 65 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------------E-EEECSSTTCCEEEEEEC---------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------------E-EecCCcccCceeeEEEC---------
Confidence 345678999999999988777668899999987 442 0 01112234567888886
Q ss_pred CcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEE
Q 007489 156 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 235 (601)
Q Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (601)
+++. ++++...++.|..|+... ..
T Consensus 66 ~~g~------------------------l~v~~~~~~~i~~~~~~g--~~------------------------------ 89 (299)
T 2z2n_A 66 SDGE------------------------VWFTENAANKIGRITKKG--II------------------------------ 89 (299)
T ss_dssp TTSC------------------------EEEEETTTTEEEEECTTS--CE------------------------------
T ss_pred CCCC------------------------EEEeCCCCCeEEEECCCC--cE------------------------------
Confidence 6665 777766678888887642 00
Q ss_pred EeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEE
Q 007489 236 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 236 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~ 314 (601)
..+.+. .....+.+++++++|+++++. .++.+..|+. . +...
T Consensus 90 ------~~~~~~-------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~---g~~~-- 132 (299)
T 2z2n_A 90 ------KEYTLP-------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D---GKIR-- 132 (299)
T ss_dssp ------EEEECS-------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-T---CCEE--
T ss_pred ------EEEeCC-------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-C---CCEE--
Confidence 000000 012457888999999887774 5667777776 2 2211
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeee-eccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
..........+..++++++|+.+++...++.|..||. +++.... +.. ....+..++++++|++++
T Consensus 133 --~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-----------~~~~~~~i~~~~~g~l~v 198 (299)
T 2z2n_A 133 --EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPT-----------PASGPVGITKGNDDALWF 198 (299)
T ss_dssp --EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS-----------TTCCEEEEEECTTSSEEE
T ss_pred --EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCC-----------CCCcceeEEECCCCCEEE
Confidence 1222333456789999999987777666789999998 6665432 221 345688999999999877
Q ss_pred EEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccC
Q 007489 394 AVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF 473 (601)
Q Consensus 394 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 473 (601)
+...++.|.+|+. +++............+.++++++ +++++++...++.|.+||. +++...+ .+..+
T Consensus 199 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~----------~~~~~ 265 (299)
T 2z2n_A 199 VEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEY----------PIQIK 265 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEE----------ECSSS
T ss_pred EccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEE----------eCCCC
Confidence 7767889999999 65543221112335789999999 8886666657889999998 3443221 11233
Q ss_pred CCcEEEEEeCCCCCCCEEEEEc-CceEEEEeCCC
Q 007489 474 PGEVIGLSFSPSPSSSSVIIYS-ARAMCVIDFGR 506 (601)
Q Consensus 474 ~~~v~~i~~~p~~~~~~~~~~~-~~~~~~~~~~~ 506 (601)
...+.++++ ++ +.+|+.+ .+.+.+++...
T Consensus 266 ~~~~~~i~~-~~---g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 266 SAEPHGICF-DG---ETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp SCCEEEEEE-CS---SCEEEEETTTEEEEEEEC-
T ss_pred CCccceEEe-cC---CCEEEEecCCcEEEEEcCc
Confidence 457899999 55 5677774 67888888643
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=2.8e-13 Score=143.64 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=108.0
Q ss_pred CCCeEEEEEcCCCCEEEE-Ec-----CCccEEEEeecCC----CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec
Q 007489 275 SRKIICSTISNSGMLFAY-SD-----HVKPSLFELKKGK----VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH 344 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~-~~-----~~~v~l~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~ 344 (601)
...+..+.|||||++|+. +. +..+++|++...+ ..... ..+..+...+.. .|+|+|+.|+..+.
T Consensus 232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----~~l~~~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW-----VKLIDNFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC-----EEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce-----EEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence 345788999999999887 33 4567788876410 11111 111222233333 58899998887766
Q ss_pred C----CcEEEEEcCCCc--eeeeeccCcccccccCCCCC-CCeeEEEEccCCCEEEEEecCCe--EEEEEcCCceEEEEe
Q 007489 345 D----RRIYVVDVSSSE--LLHTFTPCREEHDREIQPSE-PPITKMFTSSDGQWLAAVNCFGD--VYIFNLEIQRQHWFI 415 (601)
Q Consensus 345 d----g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~i~~l~~spd~~~las~~~dg~--i~iwd~~~~~~~~~~ 415 (601)
. +.|.+||+.+++ ....+..+ +. ..+..++|++++.++++...++. |++|++.+++....+
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPE----------HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECC----------CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCC----------CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 4 359999998764 23444441 22 36888999988888888888885 666777667655555
Q ss_pred eccCCCceeEEEecCCCCCEEEEEe----CCCeEEEEEcCCCC
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITT----SSNQVYVFDVEAKQ 454 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~----~dg~v~vwd~~~~~ 454 (601)
.. +...+..++++| ++..|+... ..++|++||+.+++
T Consensus 376 ~~-~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 PL-EVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CC-CSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CC-CCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 53 345788999999 887666443 24799999999877
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=2.2e-13 Score=131.23 Aligned_cols=250 Identities=8% Similarity=-0.018 Sum_probs=148.3
Q ss_pred cCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCC---C--cEEEeeCCccchhhhccccccc
Q 007489 7 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---G--SVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 7 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~d---g--~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
.++.|.+||+.+++.. .+ ..+.+++||||| +|+.++.+ + .|.+||+.+++....... ..
T Consensus 41 ~~~~l~~~d~~~~~~~-~l------------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~- 105 (347)
T 2gop_A 41 YENTIVIENLKNNARR-FI------------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN- 105 (347)
T ss_dssp EEEEEEEEETTTCCEE-EE------------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-
T ss_pred ccceEEEEeCCCCceE-Ec------------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-
Confidence 3678999999877643 23 236789999999 77766543 3 488889887766544443 34
Q ss_pred eEEEEEeCCCCEEEEEeeC---------------------------CeEEEEEeccCcCCCCCCCCCccccceeEEecCc
Q 007489 81 VNALAAAPSHNRVFSTGSD---------------------------GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 133 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~d---------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (601)
+.+++|+|||+.|+.++.+ ..|.+|++.+++. ...+
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-----------------~~~l 168 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-----------------IEEF 168 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-----------------EEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-----------------Eeee
Confidence 9999999999999887643 4566666655431 0222
Q ss_pred cccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCC
Q 007489 134 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 213 (601)
Q Consensus 134 ~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~ 213 (601)
.. . .+..++|+ ||| +++++..+.. . ...
T Consensus 169 ~~-~-~~~~~~~s---------pdg-------------------------~~~~~~~~~~-------~-----~~~---- 196 (347)
T 2gop_A 169 EK-P-RFSSGIWH---------RDK-------------------------IVVNVPHREI-------I-----PQY---- 196 (347)
T ss_dssp EE-E-TTCEEEEE---------TTE-------------------------EEEEEECCCS-------S-----CCS----
T ss_pred cC-C-CcccccCC---------CCe-------------------------EEEEEecccc-------c-----ccc----
Confidence 22 2 45555655 444 3333322210 0 000
Q ss_pred CCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 007489 214 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY- 292 (601)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~- 292 (601)
.....||.++ .. ....+... ..+..+ +|||+.|+.
T Consensus 197 ------------------------~~~~~l~~~d-~~---------------~~~~l~~~--~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 197 ------------------------FKFWDIYIWE-DG---------------KEEKMFEK--VSFYAV--DSDGERILLY 232 (347)
T ss_dssp ------------------------SCCEEEEEEE-TT---------------EEEEEEEE--ESEEEE--EECSSCEEEE
T ss_pred ------------------------cccccEEEeC-CC---------------ceEEeccC--cceeeE--CCCCCEEEEE
Confidence 0012333333 10 11122111 234443 899998877
Q ss_pred EcCC------ccEEEEeecCCCCcceEEEeeecCCcCccceeE-EEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccC
Q 007489 293 SDHV------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHS-MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC 365 (601)
Q Consensus 293 ~~~~------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 365 (601)
+.+. ...||.++. +... .....+...+.. +.|+ |+ ++++++.++.++|| +.+++... +..
T Consensus 233 ~~~~~~~~~~~~~l~~~d~---~~~~-----~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~- 299 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYDG---KEVM-----GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAK- 299 (347)
T ss_dssp ECCSSSCCCSSCEEEEECS---SCEE-----ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EEC-
T ss_pred EccccCCccccceEEEECC---CceE-----eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-Eec-
Confidence 4332 234444332 2211 223444556775 8999 88 88999999999999 87665533 333
Q ss_pred cccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE-EEEEcCCce
Q 007489 366 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV-YIFNLEIQR 410 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i-~iwd~~~~~ 410 (601)
+...|.+++|+| .++++++.++.. .||.++ ++
T Consensus 300 ----------~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 300 ----------GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ----------SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred ----------CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 566799999999 677777777664 777776 54
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=3.7e-13 Score=128.04 Aligned_cols=267 Identities=9% Similarity=-0.001 Sum_probs=173.6
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
.++.|.++|..+.+.......... ..........+.+..+..+++.. ++.+.+++..+.. .+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n-~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~---------------~~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN-GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK---------------EVG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH-SSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC---------------EEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhc-CcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE---------------EEE
Confidence 378999999987543221100000 01111223445555555566554 3788888877543 344
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe--cC
Q 007489 269 QVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--HD 345 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~--~d 345 (601)
++. .......++++++++++++. .++.|.+||+.+ ......+......+.......+++ ++..|+++. .+
T Consensus 79 ~i~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 RIT--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQ 151 (328)
T ss_dssp EEE--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTC
T ss_pred EcC--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCC
Confidence 442 34678899999999655554 688999999875 333222221111111123456677 345555555 48
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC----------CeEEEEEcCCceEEEEe
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF----------GDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d----------g~i~iwd~~~~~~~~~~ 415 (601)
+.|.++|+.+++.+.++.. ......++++|+|++++++..+ +.|.++|..+++....+
T Consensus 152 ~~v~viD~~t~~~~~~i~~------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~ 219 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTI------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF 219 (328)
T ss_dssp CEEEEEETTTTEEEEEEEC------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEEEc------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence 8999999999998887764 2345688999999987777655 78999999999877666
Q ss_pred eccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
....+..+..++|+| ++++|+++.. .|.+||+.++++... ..+......+.+++++|+ ++.+++-+
T Consensus 220 ~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~---------~~~~~~~~~p~gi~vdp~--~g~lyva~ 285 (328)
T 3dsm_A 220 KFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVR---------PFLEFRDTKYYGLTVNPN--NGEVYVAD 285 (328)
T ss_dssp ECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSS---------CSBCCCSSCEEEEEECTT--TCCEEEEE
T ss_pred ecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeee---------eeecCCCCceEEEEEcCC--CCeEEEEc
Confidence 543345789999999 9999988765 899999998875210 001112457899999997 56777765
Q ss_pred ------CceEEEEeCC
Q 007489 496 ------ARAMCVIDFG 505 (601)
Q Consensus 496 ------~~~~~~~~~~ 505 (601)
...+.+||..
T Consensus 286 ~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CTTSSSEEEEEEECTT
T ss_pred ccccccCCEEEEECCC
Confidence 4567777754
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=2.3e-12 Score=124.11 Aligned_cols=270 Identities=11% Similarity=-0.018 Sum_probs=170.6
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc----------CCCcEEEeeCCccchhhhcccc-
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------STGSVQFWDSRHGTLLQAHSFH- 77 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~----------~dg~i~vwd~~~~~~~~~~~~h- 77 (601)
+|.+||..+++.+.++.. + ..+ .++|+||| +++.+. .++.|.+||..+++.+.++...
T Consensus 48 ~v~v~D~~t~~~~~~i~~-------g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~ 117 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG-------G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD 117 (373)
T ss_pred EEEEEECCCCeEEEEecC-------C-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC
Confidence 889999999999888873 2 223 89999999 666554 3678999999988877665421
Q ss_pred ------ccceEEEEEeCCCCEEEEEee--CCeEEEEEeccCcCCCCCCCCCccccceeEEecC-ccccccceeEEEeecc
Q 007489 78 ------KGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVAVP 148 (601)
Q Consensus 78 ------~~~V~~l~~s~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~ 148 (601)
......++|+|||++|+.+.. ++.|.++| .+++. ... +.. .. ++.+.
T Consensus 118 ~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-----------------~~~~i~~-~~---~~~~~-- 173 (373)
T 2mad_H 118 APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-----------------DDQLLSS-PT---CYHIH-- 173 (373)
T ss_pred ccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-----------------EeEEcCC-Cc---eEEEE--
Confidence 123568999999999998874 57899999 88763 222 211 11 12333
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
|+++ ..+++.+.||.+.+++. +.+.......
T Consensus 174 -------~~~~-----------------------~~~~~~~~dg~~~~vd~-~g~~~~~~~~------------------ 204 (373)
T 2mad_H 174 -------PGAP-----------------------STFYLLCAQGGLAKTDH-AGGAAGAGLV------------------ 204 (373)
T ss_pred -------eCCC-----------------------ceEEEEcCCCCEEEEEC-CCcEEEEEec------------------
Confidence 4443 36667778888888887 5221100000
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCccEEEEeecCC
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGK 307 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~v~l~~~~~~~ 307 (601)
. ..............+.+++. ++..+..+.+.+.|+..
T Consensus 205 ------------------~---------------------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~-- 243 (373)
T 2mad_H 205 ------------------G---------------------AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA-- 243 (373)
T ss_pred ------------------c---------------------ccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC--
Confidence 0 00000000111233444443 33335566777777653
Q ss_pred CCcce---EEEeeec--CCc-CccceeEEEEccCCCeEEEEec----------CCcEEEEEcCCCceeeeeccCcccccc
Q 007489 308 VGQGE---WIINKRQ--LPR-KLQFAHSMIFSYDSSQLIIAGH----------DRRIYVVDVSSSELLHTFTPCREEHDR 371 (601)
Q Consensus 308 ~~~~~---~~~~~~~--~~~-~~~~v~~i~~s~d~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 371 (601)
....+ |++.... ... .......++++||+++++++.. ++.|.++|+.+++.+.++..
T Consensus 244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------- 316 (373)
T 2mad_H 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------- 316 (373)
T ss_pred CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------
Confidence 11111 1111000 000 1123445789999998888654 35799999999999888863
Q ss_pred cCCCCCCCeeEEEEccCCC-EEEEEe-cCCeEEEEEcCCceEEEEe
Q 007489 372 EIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 372 ~~~~~~~~i~~l~~spd~~-~las~~-~dg~i~iwd~~~~~~~~~~ 415 (601)
.....+++|+|||+ +++++. .++.|.+||+.+++....+
T Consensus 317 -----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 317 -----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred -----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 44688999999999 777776 5899999999999987663
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.2e-13 Score=144.38 Aligned_cols=257 Identities=10% Similarity=0.095 Sum_probs=161.5
Q ss_pred CCCceEEEEEEEeeCC-eEEEEcCC-C----cEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCe------
Q 007489 34 SGPELCIWSLLSLRCG-TLVSADST-G----SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ------ 101 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~s~~~d-g----~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~------ 101 (601)
.+|...+..++||||| +|+.+..+ | .|++||+.+++.+..... ...+..++|+|||+.|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccc
Confidence 3566789999999999 77755443 2 899999999887653322 233678999999999998887765
Q ss_pred ----------EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCcccc
Q 007489 102 ----------VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 171 (601)
Q Consensus 102 ----------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 171 (601)
|++|++.++... -..+.....|...+..+.|+ |||+
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~-------------~~~v~~~~~~~~~~~~~~~S---------pDg~------------ 245 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSE-------------DILCAEFPDEPKWMGGAELS---------DDGR------------ 245 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGG-------------CEEEECCTTCTTCEEEEEEC---------TTSC------------
T ss_pred cccccCCCCEEEEEECCCCccc-------------ceEEeccCCCCeEEEEEEEc---------CCCC------------
Confidence 999999776420 00112222344456788887 8887
Q ss_pred ccccccccCCCCEEEEecC-----CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeec
Q 007489 172 FSYHKWAHLGVPMLISAGD-----DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSV 246 (601)
Q Consensus 172 ~~~~~~~~~~~~~l~s~~~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~ 246 (601)
.|+.++. +..|++||+.+... ...
T Consensus 246 ------------~l~~~~~~~~~~~~~l~~~d~~~~~~--~~~------------------------------------- 274 (710)
T 2xdw_A 246 ------------YVLLSIREGCDPVNRLWYCDLQQESN--GIT------------------------------------- 274 (710)
T ss_dssp ------------EEEEEEECSSSSCCEEEEEEGGGSSS--SSC-------------------------------------
T ss_pred ------------EEEEEEEccCCCccEEEEEECccccc--ccC-------------------------------------
Confidence 6655543 45778887754100 000
Q ss_pred cccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcC----CccEEEEeecCCCCcceEEEeeecCC
Q 007489 247 RLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDH----VKPSLFELKKGKVGQGEWIINKRQLP 321 (601)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~----~~v~l~~~~~~~~~~~~~~~~~~~~~ 321 (601)
.. .....+. .+...+.. .++|+|+.|+. +.. ..|.+|++.. .....|.. ...
T Consensus 275 --~~--------------~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~--~~~~~~~~---l~~ 331 (710)
T 2xdw_A 275 --GI--------------LKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD--PEESKWKV---LVP 331 (710)
T ss_dssp --SS--------------CCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS--CCGGGCEE---EEC
T ss_pred --Cc--------------cceEEee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC--CCccccee---ccC
Confidence 00 0000111 11122322 47788887776 432 2466666653 22111211 111
Q ss_pred cCc-cceeEEEEccCCCeEEEEecCCc--EEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe--
Q 007489 322 RKL-QFAHSMIFSYDSSQLIIAGHDRR--IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-- 396 (601)
Q Consensus 322 ~~~-~~v~~i~~s~d~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-- 396 (601)
... ..+..++|++++.++++...++. |.+|++.+++.+..+.. +...+..+.++|+++.|+...
T Consensus 332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-----------~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-----------EVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-----------CSSEEEEEECCTTCSEEEEEEEC
T ss_pred CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-----------CCceEEEEecCCCCCEEEEEEeC
Confidence 212 36778899888878888888874 66677767877777766 667788999999998766432
Q ss_pred --cCCeEEEEEcCCce
Q 007489 397 --CFGDVYIFNLEIQR 410 (601)
Q Consensus 397 --~dg~i~iwd~~~~~ 410 (601)
..++|++||+.+++
T Consensus 401 ~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 401 FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SSCCCEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCc
Confidence 34789999998876
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=6.5e-13 Score=125.75 Aligned_cols=287 Identities=9% Similarity=-0.003 Sum_probs=172.6
Q ss_pred EEEeeCC-eEEEEcC-----CCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe----------eCCeEEEEE
Q 007489 43 LLSLRCG-TLVSADS-----TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYK 106 (601)
Q Consensus 43 v~~s~~g-~l~s~~~-----dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vw~ 106 (601)
....|++ .+..... ++.|.+.|..+++.+.++..-..+ . ++++|||++++.+. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4557888 6655543 689999999999999888865555 4 99999999988765 367899999
Q ss_pred eccCcCCCCCCCCCccccceeEEecCcccc-------ccceeEEEeeccccCCCCCCcccccccCCCCcccccccccccc
Q 007489 107 ASCESIGPNDGLSSSEVIKKWIYVGSVRAH-------THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 179 (601)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (601)
..+.+. ...+... ......++++ |||+
T Consensus 116 ~~t~~v-----------------~~~I~v~~g~r~~~g~~P~~~a~s---------pDGk-------------------- 149 (386)
T 3sjl_D 116 PVTLLP-----------------TADIELPDAPRFLVGTYPWMTSLT---------PDGK-------------------- 149 (386)
T ss_dssp TTTCCE-----------------EEEEEETTCCCCCBSCCGGGEEEC---------TTSS--------------------
T ss_pred CCCCeE-----------------EEEEECCCccccccCCCCceEEEc---------CCCC--------------------
Confidence 998763 2222211 2245567887 8887
Q ss_pred CCCCEEEEecC--CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCC
Q 007489 180 LGVPMLISAGD--DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS 257 (601)
Q Consensus 180 ~~~~~l~s~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~ 257 (601)
.++.+.. ++.|.++|+.+.+....... + +...++.
T Consensus 150 ----~lyVan~~~~~~VsVID~~t~~vv~tI~v------------------~---------g~~~~~P------------ 186 (386)
T 3sjl_D 150 ----TLLFYQFSPAPAVGVVDLEGKAFKRMLDV------------------P---------DCYHIFP------------ 186 (386)
T ss_dssp ----EEEEEECSSSCEEEEEETTTTEEEEEEEC------------------C---------SEEEEEE------------
T ss_pred ----EEEEEEcCCCCeEEEEECCCCcEEEEEEC------------------C---------Ccceeec------------
Confidence 7776653 67999999887432111100 0 0000000
Q ss_pred CCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc-c
Q 007489 258 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-Y 334 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-~ 334 (601)
. ..-.-++.++||+++.+. ..+.+. +... .. .......-....+|. +
T Consensus 187 ---------------~--g~~~~~~~~~DG~~~~v~~~~~g~v~--~~~~-----~~------~~~~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 187 ---------------T--APDTFFMHCRDGSLAKVAFGTEGTPE--ITHT-----EV------FHPEDEFLINHPAYSQK 236 (386)
T ss_dssp ---------------E--ETTEEEEEETTSCEEEEECCSSSCCE--EEEC-----CC------CSCTTSCBCSCCEEETT
T ss_pred ---------------C--CCceeEEECCCCCEEEEECCCCCeEE--Eeec-----ce------eccccccccccceeEcC
Confidence 0 000112344555555542 223331 1110 00 001111111223554 6
Q ss_pred CCCeEEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec----------CCeEE
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----------FGDVY 402 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~----------dg~i~ 402 (601)
+|++++ .+.+|.|++.|+.+.. .+..+..... ..............++++|+++.|+.... .++|.
T Consensus 237 dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~-~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 237 AGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE-AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH-HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCcEEE-EeCCCEEEEEECCCCcceeecceecccc-ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 775544 6668999999987553 3333320000 00000001233446788999998887653 25799
Q ss_pred EEEcCCceEEEEeeccCCCceeEEEecCCCCC-EEEEEe-CCCeEEEEEcCCCCc
Q 007489 403 IFNLEIQRQHWFISRLEGASVTAAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~~~~-~dg~v~vwd~~~~~~ 455 (601)
++|+.+++....++.. ..+.+|+|++ |++ +|+++. .++.|.++|..+++.
T Consensus 315 viD~~t~kv~~~i~vg--~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 315 VLDAKTGERLAKFEMG--HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEETTTCCEEEEEEEE--EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEECCCCeEEEEEECC--CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 9999999998887754 3788999999 876 666654 589999999999875
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=3.1e-13 Score=142.81 Aligned_cols=163 Identities=9% Similarity=0.025 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCEEEE-EcCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec----CCcE
Q 007489 276 RKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH----DRRI 348 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~----dg~i 348 (601)
..+..+.+||||++|++ +.++ ...+|-++. .+.... .+..+...+....+ ++|+ ++..+. ++.|
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~--~~~~~~-----~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP--GEKDFR-----LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRV 297 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECT--TCSSCE-----EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEE
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC--CCCceE-----EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEE
Confidence 56789999999998887 4333 445555543 111221 11122234445555 6666 555443 5789
Q ss_pred EEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCceeE
Q 007489 349 YVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTA 425 (601)
Q Consensus 349 ~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~ 425 (601)
.+||+.+++. ...+..+. ....+..++|+ ++.++++...|+..+||.++ .++....+.......+..
T Consensus 298 ~~~d~~~~~~~~~~~l~~~~---------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~ 367 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVPED---------SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASN 367 (695)
T ss_dssp EEEBTTBCSGGGCEEEECCC---------SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECC
T ss_pred EEEeCCCCCccCCeEEecCC---------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEE
Confidence 9999977653 23333310 24567888998 77788889999988888665 344444444322456788
Q ss_pred EEecCCCCCEEEEEeC----CCeEEEEEcCCCCcccc
Q 007489 426 AGFPPQNNNVLIITTS----SNQVYVFDVEAKQLGEW 458 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~----dg~v~vwd~~~~~~~~~ 458 (601)
++++| +++.|+.... .++|++||+.+++...+
T Consensus 368 ~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 368 LMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp CBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred eecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 89999 8877774432 47899999998875443
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=4.9e-13 Score=123.73 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=160.4
Q ss_pred ceEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 80 DVNALAAAPSHNRVF-STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 80 ~V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
...+++++++|+.++ +.+.++.|.+|+..+... ......+...+.++++. +++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~p~~i~~~---------~~g 78 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------------TVLPFNGLYQPQGLAVD---------GAG 78 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------------EECCCCSCCSCCCEEEC---------TTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------------ceEeeCCcCCcceeEEC---------CCC
Confidence 678999999999776 446788999998765432 11111223456778876 666
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 238 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (601)
+ ++++.. ++.|..|+.......
T Consensus 79 ~------------------------l~v~~~-~~~i~~~d~~~~~~~--------------------------------- 100 (270)
T 1rwi_B 79 T------------------------VYVTDF-NNRVVTLAAGSNNQT--------------------------------- 100 (270)
T ss_dssp C------------------------EEEEET-TTEEEEECTTCSCCE---------------------------------
T ss_pred C------------------------EEEEcC-CCEEEEEeCCCceEe---------------------------------
Confidence 4 666655 888999886641100
Q ss_pred CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEee
Q 007489 239 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 239 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
.+.......+..++++++|+++++ ..++.|.+|+... ....
T Consensus 101 ------------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~----- 142 (270)
T 1rwi_B 101 ------------------------------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQT----- 142 (270)
T ss_dssp ------------------------------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSCE-----
T ss_pred ------------------------------eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC---ceeE-----
Confidence 000011245788999999987777 4567788775322 2111
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
.........+..++++++|+++++...++.|.+||............ ....+..++++++|.++++...
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-----------DITAPWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-----------SCCSEEEEEECTTCCEEEEETT
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-----------CCCCceEEEECCCCCEEEEECC
Confidence 11122234568899999998777766788999999876554332222 3366899999999987777777
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
++.|.+|+..+..... ....+...+.++++++ +++++++...++.|++|++...+
T Consensus 212 ~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 212 TNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TSCEEEECTTCSCCEE-CCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCcEEEEcCCCCccee-eccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 8899999998765432 2222225689999999 89888888889999999998765
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=3.1e-13 Score=125.08 Aligned_cols=240 Identities=10% Similarity=-0.015 Sum_probs=157.8
Q ss_pred EEEEEEEeeCC-eEE-EEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC
Q 007489 39 CIWSLLSLRCG-TLV-SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 116 (601)
Q Consensus 39 ~V~~v~~s~~g-~l~-s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 116 (601)
...+++++++| .++ +...++.|.+||..++........+...+.+++++++|+.+++.. ++.|.+|+..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence 68899999999 555 446789999999875543322223445788999999999666666 88999999876542
Q ss_pred CCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEE
Q 007489 117 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 196 (601)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~ 196 (601)
..........+..+++. ++++ ++++...++.|.+
T Consensus 100 -------------~~~~~~~~~~p~~i~~~---------~~g~------------------------l~v~~~~~~~i~~ 133 (270)
T 1rwi_B 100 -------------TVLPFDGLNYPEGLAVD---------TQGA------------------------VYVADRGNNRVVK 133 (270)
T ss_dssp -------------EECCCCSCSSEEEEEEC---------TTCC------------------------EEEEEGGGTEEEE
T ss_pred -------------eeeecCCcCCCcceEEC---------CCCC------------------------EEEEECCCCEEEE
Confidence 11111223467788887 7765 7777677788888
Q ss_pred EeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCC
Q 007489 197 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR 276 (601)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (601)
|+..+...... ......
T Consensus 134 ~~~~~~~~~~~---------------------------------------------------------------~~~~~~ 150 (270)
T 1rwi_B 134 LAAGSKTQTVL---------------------------------------------------------------PFTGLN 150 (270)
T ss_dssp ECTTCCSCEEC---------------------------------------------------------------CCCSCC
T ss_pred EECCCceeEee---------------------------------------------------------------ccccCC
Confidence 86443110000 000113
Q ss_pred CeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 277 KIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
.+.+++++++|+++++. .++.|.+|+... .... .........+..++++++|.++++...++.|.+|+...
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~-----~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAES---NNQV-----VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTT---CCEE-----ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCC---CceE-----eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 45678899999877664 567888888653 2211 11122235678999999997777666788999999865
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 411 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~ 411 (601)
.... .+... +...+.+++++|+|+++++...+++|++|++...+.
T Consensus 223 ~~~~-~~~~~----------~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 223 TTST-VLPFT----------GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCCE-ECCCC----------SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred Ccce-eeccC----------CCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 4332 22210 335689999999999888888999999999877654
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=5.4e-12 Score=121.52 Aligned_cols=285 Identities=9% Similarity=-0.029 Sum_probs=172.9
Q ss_pred EEeeCC-eEEEEcC--CC---cEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe----------eCCeEEEEEe
Q 007489 44 LSLRCG-TLVSADS--TG---SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKA 107 (601)
Q Consensus 44 ~~s~~g-~l~s~~~--dg---~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vw~~ 107 (601)
...|++ ++.+... .. .|.++|..+++.+.++.....+ .++++|||++++.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 344677 5555543 22 8899999999988877754444 999999999999875 3678999999
Q ss_pred ccCcCCCCCCCCCccccceeEEecCccc-------cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccC
Q 007489 108 SCESIGPNDGLSSSEVIKKWIYVGSVRA-------HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 180 (601)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (601)
.+.+. ...+.. +......++++ |||+
T Consensus 105 ~t~~~-----------------~~~i~~~~~~~~~~g~~p~~~~~s---------pDG~--------------------- 137 (373)
T 2mad_H 105 VTFLP-----------------IADIELPDAPRFDVGPYSWMNANT---------PNNA--------------------- 137 (373)
T ss_pred CCCcE-----------------EEEEECCCccccccCCCccceEEC---------CCCC---------------------
Confidence 87653 111110 12334577887 8987
Q ss_pred CCCEEEEecC--CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 181 GVPMLISAGD--DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 181 ~~~~l~s~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
+|+.++. +..|.++| .+.+.... +
T Consensus 138 ---~l~v~n~~~~~~v~viD-~t~~~~~~-----------------------------------~--------------- 163 (373)
T 2mad_H 138 ---DLLFFQFAAGPAVGLVV-QGGSSDDQ-----------------------------------L--------------- 163 (373)
T ss_pred ---EEEEEecCCCCeEEEEE-CCCCEEeE-----------------------------------E---------------
Confidence 7777664 46899998 76321110 0
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCC--EEEEEcCCccEEEEeecCCCCcceEEEee-ecCCcCccceeEEEEccC
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGM--LFAYSDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYD 335 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~d 335 (601)
+..+ .++.+.|++. +++.+.++++.+++. . +........ ....+...-.....+.++
T Consensus 164 -----------i~~~-----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~---g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 164 -----------LSSP-----TCYHIHPGAPSTFYLLCAQGGLAKTDH-A---GGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred -----------cCCC-----ceEEEEeCCCceEEEEcCCCCEEEEEC-C---CcEEEEEeccccccCCcceeecceeEec
Confidence 0000 0122333332 222256666666666 3 222111110 001111111233566777
Q ss_pred CCeEEEEecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec----------CCeEEE
Q 007489 336 SSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----------FGDVYI 403 (601)
Q Consensus 336 ~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~----------dg~i~i 403 (601)
+..++..+..+.+.+.|+.... .+..+...... .............++++||++.|+++.. ++.|.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~-~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGG-RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc-ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 6666555678899999986543 22333210000 0000001223445889999998877653 357999
Q ss_pred EEcCCceEEEEeeccCCCceeEEEecCCCCC-EEEEEe-CCCeEEEEEcCCCCc
Q 007489 404 FNLEIQRQHWFISRLEGASVTAAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 404 wd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~~~~-~dg~v~vwd~~~~~~ 455 (601)
+|+.+++....++.. ....+++|+| |++ +|+++. .++.|.+||+.+++.
T Consensus 303 ID~~t~~vv~~i~~g--~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 303 VTGLVGQTSSQISLG--HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EECCCCEEEEEEECC--CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 999999988787643 3689999999 998 777776 589999999999874
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.58 E-value=1.6e-11 Score=115.35 Aligned_cols=277 Identities=9% Similarity=0.081 Sum_probs=181.0
Q ss_pred CceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhh-hccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 36 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 36 h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
....+.++++.++| .+++...++.|.+||.. ++... .+..+...+.++++.++|+.+++...++.|..|+.. +..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 45678999999999 55666678999999988 65432 222344678999999999988877778889999877 431
Q ss_pred CCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCe
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 193 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 193 (601)
. ..........+.++++. ++++ ++++...++.
T Consensus 95 --------------~-~~~~~~~~~~~~~i~~~---------~~g~------------------------l~v~~~~~~~ 126 (300)
T 2qc5_A 95 --------------T-EYPLPQPDSGPYGITEG---------LNGD------------------------IWFTQLNGDR 126 (300)
T ss_dssp --------------E-EEECSSTTCCEEEEEEC---------STTC------------------------EEEEETTTTE
T ss_pred --------------E-EecCCCCCCCCccceEC---------CCCC------------------------EEEEccCCCe
Confidence 0 01111223567788876 6665 6666666778
Q ss_pred EEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec
Q 007489 194 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 273 (601)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (601)
|..++... . +..+.+. .
T Consensus 127 i~~~~~~g-~-------------------------------------~~~~~~~-------------------------~ 143 (300)
T 2qc5_A 127 IGKLTADG-T-------------------------------------IYEYDLP-------------------------N 143 (300)
T ss_dssp EEEECTTS-C-------------------------------------EEEEECS-------------------------S
T ss_pred EEEECCCC-C-------------------------------------EEEccCC-------------------------C
Confidence 88777541 1 0000000 0
Q ss_pred CCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 274 ASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
....+.++++.++|+++++. ..+.|..|+.. +... ....+.....+..++++++|.++++....+.|.+|+
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~----g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITNT----GKLE----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECTT----CCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECCC----CcEE----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 12457888999999966664 35667777652 2211 122333345678999999997766666677899999
Q ss_pred cCCCceeee-eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEE-EEeeccCCCceeEEEecC
Q 007489 353 VSSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPP 430 (601)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p 430 (601)
. +++.... +.. ....+.+++++++|++.++...++.|..|+.. ++.. ..++. ....+.++++.+
T Consensus 216 ~-~g~~~~~~~~~-----------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~~~i~~~~ 281 (300)
T 2qc5_A 216 T-TGEISEYDIPT-----------PNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQT-ENAEPHGITFGK 281 (300)
T ss_dssp T-TCCEEEEECSS-----------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCS-TTCCCCCEEECT
T ss_pred C-CCcEEEEECCC-----------CCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCc-cCCccceeEeCC
Confidence 7 4554332 221 45668999999999977776677899999984 4332 22221 235688999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC
Q 007489 431 QNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~ 451 (601)
++.+.++.. . .|..+|.+
T Consensus 282 -~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 282 -DGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp -TSCEEEECS-S-EEEEEEEC
T ss_pred -CCCEEEEcc-C-ceEEeCCC
Confidence 887555444 5 78887764
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.5e-12 Score=119.90 Aligned_cols=221 Identities=11% Similarity=0.035 Sum_probs=156.7
Q ss_pred CCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccc-cceeEEEeeccccCCCCCCcccccccCCCC
Q 007489 89 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGRE 167 (601)
Q Consensus 89 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~ 167 (601)
.++.|++++.|+.|.+||..+++. +..+..+. ..+.++++. |+|+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------~w~~~~~~~~~~~~~~~~---------pdG~-------- 49 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----------------VWEYPLEKGWECNSVAAT---------KAGE-------- 49 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----------------EEEEECCTTCCCCEEEEC---------TTSC--------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----------------EEEeCCCccCCCcCeEEC---------CCCC--------
Confidence 468899999999999999988874 33333333 356777777 8876
Q ss_pred ccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecc
Q 007489 168 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 247 (601)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~ 247 (601)
++++ .++.|..||. +.+ .+|.+.
T Consensus 50 ----------------ilvs--~~~~V~~~d~-~G~--------------------------------------~~W~~~ 72 (276)
T 3no2_A 50 ----------------ILFS--YSKGAKMITR-DGR--------------------------------------ELWNIA 72 (276)
T ss_dssp ----------------EEEE--CBSEEEEECT-TSC--------------------------------------EEEEEE
T ss_pred ----------------EEEe--CCCCEEEECC-CCC--------------------------------------EEEEEc
Confidence 7773 4667888776 311 233333
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec-CCcCccc
Q 007489 248 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ-LPRKLQF 326 (601)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ 326 (601)
. +....+.++.+.++|+++++......+++.++. .+..+|...... ...+...
T Consensus 73 ~------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~ 126 (276)
T 3no2_A 73 A------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQ 126 (276)
T ss_dssp C------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGS
T ss_pred C------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCccccc
Confidence 1 112356788899999999884332344555543 366667654321 1222234
Q ss_pred eeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEc
Q 007489 327 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 406 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~ 406 (601)
...+++.++|+++++...++.|..||.. |+.+.++.. ...+..+.+.++|++++++..+++|..+|.
T Consensus 127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC------------SSCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC------------CCCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 5667889999999999999999999988 999998875 234567888999999999999999999999
Q ss_pred CCceEEEEeeccC--C---CceeEEEecCCCCCEEEEEe
Q 007489 407 EIQRQHWFISRLE--G---ASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 407 ~~~~~~~~~~~~~--~---~~v~~l~~~p~~~~~l~~~~ 440 (601)
++++..+.+.... + ..+..++..+ ++.++++..
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred cCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEec
Confidence 9999988886421 1 2378888888 888877764
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=2.2e-13 Score=143.95 Aligned_cols=250 Identities=8% Similarity=-0.020 Sum_probs=155.5
Q ss_pred CCCceEEEEEEEeeCC-eEE-----EEcCCCcEEEeeCCccchhhhccccccce--EEEEEeCCCCEEEEEeeCCe----
Q 007489 34 SGPELCIWSLLSLRCG-TLV-----SADSTGSVQFWDSRHGTLLQAHSFHKGDV--NALAAAPSHNRVFSTGSDGQ---- 101 (601)
Q Consensus 34 ~~h~~~V~~v~~s~~g-~l~-----s~~~dg~i~vwd~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~~~dg~---- 101 (601)
.+|...+.+++||||| +|| +|+.+..|++||+.+|+.+.. .+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 4677889999999999 776 444567899999999886511 122222 68999999999999888766
Q ss_pred ---------EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccc
Q 007489 102 ---------VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 172 (601)
Q Consensus 102 ---------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 172 (601)
|++|++.++... -..+.....|...+.++.++ |||+
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~-------------~~lv~~~~~~~~~~~~~~~S---------pDG~------------- 239 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSK-------------DTVVHERTGDPTTFLQSDLS---------RDGK------------- 239 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGG-------------CEEEECCCCCTTCEEEEEEC---------TTSC-------------
T ss_pred cccCCCCCEEEEEECCCCchh-------------ceEEEecCCCCEEEEEEEEC---------CCCC-------------
Confidence 999999876520 00122333455567788887 8887
Q ss_pred cccccccCCCCEEEEecCCC----eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccc
Q 007489 173 SYHKWAHLGVPMLISAGDDT----KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL 248 (601)
Q Consensus 173 ~~~~~~~~~~~~l~s~~~d~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~ 248 (601)
.|+.++.++ .|++++..+..
T Consensus 240 -----------~l~~~~~~~~~~~~l~~~~~~~~~--------------------------------------------- 263 (695)
T 2bkl_A 240 -----------YLFVYILRGWSENDVYWKRPGEKD--------------------------------------------- 263 (695)
T ss_dssp -----------CEEEEEEETTTEEEEEEECTTCSS---------------------------------------------
T ss_pred -----------EEEEEEeCCCCceEEEEEcCCCCc---------------------------------------------
Confidence 555555443 55555432100
Q ss_pred cCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc----CCccEEEEeecCCCCcceEEEeeecCCcC-
Q 007489 249 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD----HVKPSLFELKKGKVGQGEWIINKRQLPRK- 323 (601)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~- 323 (601)
...+.. +...+....+ ++|.+++.+. ++.|.+|++.. .....|. ..+..+
T Consensus 264 ------------------~~~l~~-~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~--~~~~~~~---~l~~~~~ 318 (695)
T 2bkl_A 264 ------------------FRLLVK-GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK--PARASWK---EIVPEDS 318 (695)
T ss_dssp ------------------CEEEEE-CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB--CSGGGCE---EEECCCS
T ss_pred ------------------eEEeec-CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC--CCccCCe---EEecCCC
Confidence 011111 1123334444 5566333343 45677777654 1211121 111222
Q ss_pred ccceeEEEEccCCCeEEEEecCCcEEEEEcC-CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe----cC
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN----CF 398 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~----~d 398 (601)
...+..++++ ++.++++...++..+||.+. +++....+..+ ....+..++++|+++.|+... ..
T Consensus 319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~----------~~~~v~~~~~s~d~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP----------GVGAASNLMGLEDLDDAYYVFTSFTTP 387 (695)
T ss_dssp SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS----------SSSEECCCBSCTTCSEEEEEEEETTEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC----------CCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 3457778888 67788888889988887654 35555555431 256688889999998777332 35
Q ss_pred CeEEEEEcCCceEE
Q 007489 399 GDVYIFNLEIQRQH 412 (601)
Q Consensus 399 g~i~iwd~~~~~~~ 412 (601)
++|++||+.+++..
T Consensus 388 ~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 388 RQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEETTTCCEE
T ss_pred CEEEEEECCCCcEE
Confidence 78999999987753
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=1.3e-12 Score=126.08 Aligned_cols=270 Identities=11% Similarity=0.021 Sum_probs=177.7
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc----------CCCcEEEeeCCccchhhhcccc
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------STGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~----------~dg~i~vwd~~~~~~~~~~~~h 77 (601)
+.|.++|..+++.+.++..+ . .+ .++++||| +|+.+. .++.|.++|..+++.+.++.--
T Consensus 99 ~~VsVID~~t~~vv~~I~vG-------~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG-------F-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP 168 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC-------S-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CeEEEEECCCCEEEEEEECC-------C-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence 69999999999999999863 2 23 68999999 665554 4678999999999988776521
Q ss_pred -------ccceEEEEEeCCCCEEEEEee--CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecc
Q 007489 78 -------KGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 148 (601)
Q Consensus 78 -------~~~V~~l~~s~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 148 (601)
......++|+|||++++.+.. ++.|.+.|+.+.+. ...+.... . ....
T Consensus 169 g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-----------------v~~I~v~g--~--~~~~-- 225 (426)
T 3c75_H 169 DAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-----------------DRMLDVPD--C--YHIF-- 225 (426)
T ss_dssp TCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-----------------EEEEECCS--E--EEEE--
T ss_pred CccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-----------------EEEEEcCC--c--eeec--
Confidence 234567899999999998864 57899999998763 22222111 1 1222
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
|+++ ..+++.+.||.+.+.+....+...
T Consensus 226 -------p~g~-----------------------~~~v~~~~dG~~~~V~~~~~~v~~---------------------- 253 (426)
T 3c75_H 226 -------PASP-----------------------TVFYMNCRDGSLARVDFADGETKV---------------------- 253 (426)
T ss_dssp -------EEET-----------------------TEEEEEETTSSEEEEECCTTCCEE----------------------
T ss_pred -------cCCC-----------------------cEEEEEcCCCCEEEEECCCCcEEE----------------------
Confidence 4443 366667778877777763311100
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCC
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK 307 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~ 307 (601)
... .++++... .....+.+++++..++. ...+.+.+.|+..
T Consensus 254 -------~~~---~~~~v~~~--------------------------p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~-- 295 (426)
T 3c75_H 254 -------TNT---EVFHTEDE--------------------------LLINHPAFSLRSGRLVWPTYTGKIFQADLTA-- 295 (426)
T ss_dssp -------EEC---CCCSCTTS--------------------------CBCSCCEECTTTCEEEEEBTTSEEEEEEECS--
T ss_pred -------Eee---eeeccCCC--------------------------ceeeEeeecCCCCEEEEEeCCCcEEEEeccC--
Confidence 000 11111100 00112456777766555 5667788888753
Q ss_pred CCcceEEEeeecCC--------cCccceeEEEEccCCCeEEEEec----------CCcEEEEEcCCCceeeeeccCcccc
Q 007489 308 VGQGEWIINKRQLP--------RKLQFAHSMIFSYDSSQLIIAGH----------DRRIYVVDVSSSELLHTFTPCREEH 369 (601)
Q Consensus 308 ~~~~~~~~~~~~~~--------~~~~~v~~i~~s~d~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~ 369 (601)
....+ +....+. ........++++|+++++++... ++.|.++|+.+.+.+.++..
T Consensus 296 ~~~~v--~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----- 368 (426)
T 3c75_H 296 EGATF--RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----- 368 (426)
T ss_dssp SCEEE--CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----
T ss_pred CceEE--eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-----
Confidence 11111 0111110 00112234789999998877653 35799999999999998874
Q ss_pred cccCCCCCCCeeEEEEccCCC-EEEEEe-cCCeEEEEEcCCceEEEEe
Q 007489 370 DREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~-~las~~-~dg~i~iwd~~~~~~~~~~ 415 (601)
......++|+|||+ +|++.. .++.|.|+|+.+++....+
T Consensus 369 -------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 -------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp -------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred -------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 23588999999999 888887 5899999999999988776
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=5.4e-12 Score=134.32 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCEEEE-EcC-----CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC----C
Q 007489 277 KIICSTISNSGMLFAY-SDH-----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD----R 346 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~-~~~-----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d----g 346 (601)
.+..+.|||||++|+. +.+ ..+++|++..... .....+ ..+...+... ++|+|+.|+..+.+ +
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l-----~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTAL-----IPDLKAQWDF-VDGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEE-----ECSSSSCEEE-EEEETTEEEEEECTTCTTC
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEe-----cCCCCceEEE-EeccCCEEEEEECCCCCCC
Confidence 4788999999998887 433 3788888875100 101111 1222233333 34899998888764 4
Q ss_pred cEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-CceEEEEeeccCCCcee
Q 007489 347 RIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVT 424 (601)
Q Consensus 347 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~ 424 (601)
.|.+||+.++. ....+... +...+..++++ ++.++++...|+..+||.++ .++....+.......+.
T Consensus 342 ~l~~~d~~~~~~~~~~l~~~----------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 410 (741)
T 1yr2_A 342 KIVRVDLSGSTPRFDTVVPE----------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSAS 410 (741)
T ss_dssp EEEEEECSSSSCEEEEEECC----------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEE
T ss_pred EEEEEeCCCCccccEEEecC----------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEE
Confidence 59999988742 22333331 44456778887 56677888889887777554 34444445432345788
Q ss_pred EEEecCCCCCEEEEEe----CCCeEEEEEcCCCCccc
Q 007489 425 AAGFPPQNNNVLIITT----SSNQVYVFDVEAKQLGE 457 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~----~dg~v~vwd~~~~~~~~ 457 (601)
.++++| +++.|+... ..++|++||+.+++...
T Consensus 411 ~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 411 GLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp EEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 999999 777666432 34789999999877543
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=9.9e-11 Score=109.93 Aligned_cols=278 Identities=12% Similarity=0.092 Sum_probs=180.1
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 156 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 156 (601)
....+.++++.++|+..++...++.|.+|+.. +.. . ...+..+...+.++++. +
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------------~-~~~~~~~~~~~~~i~~~---------~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------------K-EFEVPTPDAKVMCLIVS---------S 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------E-EEECSSTTCCEEEEEEC---------T
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------------E-EEECCCCCCcceeEEEC---------C
Confidence 35678899999999988877778999999977 442 0 00112223567778776 6
Q ss_pred cccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 157 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
++. ++++...++.|..+|... . ..
T Consensus 72 ~g~------------------------l~v~~~~~~~v~~~d~~g-~-~~------------------------------ 95 (300)
T 2qc5_A 72 LGD------------------------IWFTENGANKIGKLSKKG-G-FT------------------------------ 95 (300)
T ss_dssp TSC------------------------EEEEETTTTEEEEECTTS-C-EE------------------------------
T ss_pred CCC------------------------EEEEecCCCeEEEECCCC-C-eE------------------------------
Confidence 664 666666677888887552 1 00
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEec-CCCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK-ASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~ 314 (601)
.+... ....+.++++.++|+++++. .++.|..++.. +...
T Consensus 96 --------------------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~-- 137 (300)
T 2qc5_A 96 --------------------------------EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD----GTIY-- 137 (300)
T ss_dssp --------------------------------EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT----SCEE--
T ss_pred --------------------------------EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC----CCEE--
Confidence 00000 12457788899999877774 35666666543 2111
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 394 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las 394 (601)
...+......+..+++.++++++++...++.|..||. +++... +.... ....+..++++++|++.++
T Consensus 138 --~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~---------~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 138 --EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT---------NAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp --EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS---------TTCCEEEEEECTTSSEEEE
T ss_pred --EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC---------CCCCcceEEECCCCCEEEE
Confidence 1123333456789999999986666656788999998 565443 32111 3457899999999988777
Q ss_pred EecCCeEEEEEcCCceEEEE-eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccC
Q 007489 395 VNCFGDVYIFNLEIQRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF 473 (601)
Q Consensus 395 ~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 473 (601)
....+.|.+|+. +++.... ++ .....+.++++.+ ++++.++...++.|..||. +++...+ .+...
T Consensus 205 ~~~~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~----------~~~~~ 270 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEISEYDIP-TPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEY----------QLQTE 270 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECS-STTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEE----------ECCST
T ss_pred ccCCCEEEEEcC-CCcEEEEECC-CCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEE----------ECCcc
Confidence 777788999998 4443322 22 1235689999999 8886666666789999998 4443221 11122
Q ss_pred CCcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 474 PGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 474 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
...+.+++++++ +.+|+.+.+.+..++.
T Consensus 271 ~~~~~~i~~~~~---g~l~v~~~~~i~~~~p 298 (300)
T 2qc5_A 271 NAEPHGITFGKD---GSVWFALKCKIGKLNL 298 (300)
T ss_dssp TCCCCCEEECTT---SCEEEECSSEEEEEEE
T ss_pred CCccceeEeCCC---CCEEEEccCceEEeCC
Confidence 345788999887 4577776447777764
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=1.4e-11 Score=118.91 Aligned_cols=272 Identities=10% Similarity=0.007 Sum_probs=166.5
Q ss_pred CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe----------eCCeEEEEEeccCcCCCCCCCCCcccccee
Q 007489 58 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPNDGLSSSEVIKKW 127 (601)
Q Consensus 58 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 127 (601)
+.|.+.|..+++.+.++..-..+ .++++|||++|+.+. .++.|.++|..+.+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v--------------- 161 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP--------------- 161 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE---------------
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE---------------
Confidence 79999999999999888854555 899999999988775 467899999988763
Q ss_pred EEecCccc-------cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecC--CCeEEEEe
Q 007489 128 IYVGSVRA-------HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD--DTKLFAYC 198 (601)
Q Consensus 128 ~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~v~~~~ 198 (601)
...+.. .......++++ |||+ +++.+.. ++.|.++|
T Consensus 162 --v~~I~v~g~~r~~~g~~P~~~~~s---------pDGk------------------------~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 162 --IADIELPDAPRFLVGTYQWMNALT---------PDNK------------------------NLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp --EEEEEETTCCCCCBSCCGGGSEEC---------TTSS------------------------EEEEEECSSSCEEEEEE
T ss_pred --EEEEECCCccccccCCCcceEEEc---------CCCC------------------------EEEEEecCCCCeEEEEE
Confidence 222211 12334566777 8887 7777654 56899999
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
+.+.+....... + +...+ ... ..-
T Consensus 207 ~~t~kvv~~I~v------------------~---------g~~~~---------------------------~p~--g~~ 230 (426)
T 3c75_H 207 LEGKTFDRMLDV------------------P---------DCYHI---------------------------FPA--SPT 230 (426)
T ss_dssp TTTTEEEEEEEC------------------C---------SEEEE---------------------------EEE--ETT
T ss_pred CCCCeEEEEEEc------------------C---------Cceee---------------------------ccC--CCc
Confidence 886332111000 0 00000 000 001
Q ss_pred EEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecCC-cCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC
Q 007489 279 ICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLP-RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS 356 (601)
Q Consensus 279 ~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~ 356 (601)
..++++++|+++++. .++++.. ... ..+. ........+.|++++..++..+..+.|.+.|+...
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~-------------~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKV-------------TNT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEE-------------EEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCCCcEEE-------------Eee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 123344555544442 2222221 000 0010 11111234578999998888888999999998654
Q ss_pred ce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec----------CCeEEEEEcCCceEEEEeeccCCCcee
Q 007489 357 EL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----------FGDVYIFNLEIQRQHWFISRLEGASVT 424 (601)
Q Consensus 357 ~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~ 424 (601)
.. +..+..... ..............++++||++.|++... ++.|.++|+.+.+....++.. ....
T Consensus 297 ~~~v~~~~~~~~~-~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~ 373 (426)
T 3c75_H 297 GATFRAPIEALTE-AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEID 373 (426)
T ss_dssp CEEECCCEESSCT-TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEEC
T ss_pred ceEEeeeeeeccc-cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcC
Confidence 32 122211000 00000001112234789999998776643 357999999999998888753 3689
Q ss_pred EEEecCCCCC-EEEEEe-CCCeEEEEEcCCCCc
Q 007489 425 AAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 425 ~l~~~p~~~~-~l~~~~-~dg~v~vwd~~~~~~ 455 (601)
+++|+| |++ +|+++. .++.|.|+|+.+.+.
T Consensus 374 gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 374 SINVSQ-DAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEECC-SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred eEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 999999 998 888888 589999999999875
No 206
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.48 E-value=1.1e-10 Score=113.73 Aligned_cols=318 Identities=15% Similarity=0.175 Sum_probs=186.4
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCC-CCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG-SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 80 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 80 (601)
|++++.++.|..+|..+|+.+.+......... ......+.+.....++.++.++.++.|..+|..+|+.+.........
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 135 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA 135 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce
Confidence 56778889999999999999988874211000 00022333333334668888889999999999999987665543222
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccc-ceeEEEeeccccCCCCCCccc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-DVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~d~~ 159 (601)
....... +..++.++.++.|..+|..+++. .|........... ......+ .
T Consensus 136 ~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-------------~W~~~~~~~~~~~~~~~~~~~----------~--- 187 (376)
T 3q7m_A 136 LSRPVVS--DGLVLIHTSNGQLQALNEADGAV-------------KWTVNLDMPSLSLRGESAPTT----------A--- 187 (376)
T ss_dssp CSCCEEE--TTEEEEECTTSEEEEEETTTCCE-------------EEEEECCC-----CCCCCCEE----------E---
T ss_pred EcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-------------EEEEeCCCCceeecCCCCcEE----------E---
Confidence 1222222 45788888899999999988763 3443221000000 0001111 0
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
...++.+..++.|..+|..+.+.
T Consensus 188 ----------------------~~~v~~g~~~g~l~~~d~~tG~~----------------------------------- 210 (376)
T 3q7m_A 188 ----------------------FGAAVVGGDNGRVSAVLMEQGQM----------------------------------- 210 (376)
T ss_dssp ----------------------TTEEEECCTTTEEEEEETTTCCE-----------------------------------
T ss_pred ----------------------CCEEEEEcCCCEEEEEECCCCcE-----------------------------------
Confidence 12778888899999999875321
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeec
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ 319 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 319 (601)
+|......... . ..+..+.......+ + .++.+++.+.++.+..++..+ +..+|....
T Consensus 211 ---~w~~~~~~~~~-------~---~~~~~~~~~~~~p~----~-~~~~v~~~~~~g~l~~~d~~t---G~~~w~~~~-- 267 (376)
T 3q7m_A 211 ---IWQQRISQATG-------S---TEIDRLSDVDTTPV----V-VNGVVFALAYNGNLTALDLRS---GQIMWKREL-- 267 (376)
T ss_dssp ---EEEEECCC---------------------CCCCCCE----E-ETTEEEEECTTSCEEEEETTT---CCEEEEECC--
T ss_pred ---EEEEecccCCC-------C---cccccccccCCCcE----E-ECCEEEEEecCcEEEEEECCC---CcEEeeccC--
Confidence 12221110000 0 00000000000111 1 134444446788888888875 667776442
Q ss_pred CCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 320 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 320 ~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
. ....+.. ++..+++++.++.|..+|..+++.+...... ....+..... .+..|+.++.+|
T Consensus 268 -~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----------~~~~~~~~~~--~~~~l~v~~~~g 328 (376)
T 3q7m_A 268 -G----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL----------LHRLLTSPVL--YNGNLVVGDSEG 328 (376)
T ss_dssp -C----CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT----------TTSCCCCCEE--ETTEEEEECTTS
T ss_pred -C----CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc----------CCCcccCCEE--ECCEEEEEeCCC
Confidence 1 2233333 4667888889999999999999987766521 1122223333 356888899999
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEE
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd 449 (601)
.|+++|..+++..+............... .+..|++++.+|.|+.|+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~---~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA---ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCTTCBCSCCEE---ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCcceeCCEE---ECCEEEEEeCCCEEEEEe
Confidence 99999999999887766422212222222 245788899999999987
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=3.1e-11 Score=114.26 Aligned_cols=121 Identities=11% Similarity=-0.000 Sum_probs=84.4
Q ss_pred CCeEEEEEc----CCCCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcCc-cceeEEEEccCCCeEEEEecCCcE
Q 007489 276 RKIICSTIS----NSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL-QFAHSMIFSYDSSQLIIAGHDRRI 348 (601)
Q Consensus 276 ~~i~~~~~s----~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~s~d~~~l~~~~~dg~i 348 (601)
.....++++ |+++.+.+ ..++.|.+|++.. .+...-......+..+. .....++++++|+++++...++.|
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~--~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG--PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE--TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC--CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 346788899 99976554 3567899998863 12110000012233333 457889999999888877788899
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE-ecCCeEEEEEcCCc
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV-NCFGDVYIFNLEIQ 409 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~-~~dg~i~iwd~~~~ 409 (601)
.+||..+++.+..+.. +...+.+++|+|++++|+.+ ..++.|..|++...
T Consensus 250 ~~~d~~~g~~~~~~~~-----------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRC-----------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEECTTCBSCSEEEEC-----------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEcCCCCcEeEEEeC-----------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999887877766665 55679999999999955544 45688999998753
No 208
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.46 E-value=1.1e-11 Score=117.86 Aligned_cols=274 Identities=9% Similarity=-0.056 Sum_probs=175.8
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEc----------CCCcEEEeeCCccchhhhcccc-
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------STGSVQFWDSRHGTLLQAHSFH- 77 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~----------~dg~i~vwd~~~~~~~~~~~~h- 77 (601)
+|.++|..+++.+.++.. +.. + .++|+||| ++..+. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~v-------G~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-------AFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-------CTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCeEEEEEeC-------CCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 788999999999999986 333 3 69999999 666554 3688999999999999888643
Q ss_pred ------ccceEEEEEeCCCCEEEEEee--CCeEEE--EEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeec
Q 007489 78 ------KGDVNALAAAPSHNRVFSTGS--DGQVIL--YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 147 (601)
Q Consensus 78 ------~~~V~~l~~s~~~~~l~s~~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 147 (601)
......++++|||++++.+.. +..|.+ +|..+ . ..+.. . .. ..+.
T Consensus 117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v-------------------~~i~v-~-~~--~~~~- 171 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D-------------------QLTKS-A-SC--FHIH- 171 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E-------------------EEEEC-S-SC--CCCE-
T ss_pred ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c-------------------eEEEC-C-Cc--eEEc-
Confidence 134678999999999998864 356888 77765 1 11110 0 00 1122
Q ss_pred cccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccc----cCCcCCCccCCCCCccceeeee
Q 007489 148 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE----FTKFSPHEICPAPQRVPIHLVH 223 (601)
Q Consensus 148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 223 (601)
|+++ ..+++.+.|+.+.+.+..+ ........
T Consensus 172 --------p~g~-----------------------~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~-------------- 206 (368)
T 1mda_H 172 --------PGAA-----------------------ATHYLGSCPASLAASDLAAAPAAAGIVGAQC-------------- 206 (368)
T ss_dssp --------EEET-----------------------TEEECCCCTTSCEEEECCSSCCCCEECCCCS--------------
T ss_pred --------cCCC-----------------------eEEEEEcCCCCEEEEECccccccCCeEEEEe--------------
Confidence 5554 3566777788887777764 11000000
Q ss_pred ccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE-EEEcCCccEEEE
Q 007489 224 NTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF-AYSDHVKPSLFE 302 (601)
Q Consensus 224 ~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~~~v~l~~ 302 (601)
. ..+.+. ..+. + ++++..+ .++. +.+.+.|
T Consensus 207 ----------------t-~~i~vg---------------------------~~P~---~-~~~~~~~~~vs~-~~V~viD 237 (368)
T 1mda_H 207 ----------------T-GAQNCS---------------------------SQAA---Q-ANYPGMLVWAVA-SSILQGD 237 (368)
T ss_dssp ----------------C-TTSCBC---------------------------SCCE---E-ETTTTEEEECBS-SCCEEEE
T ss_pred ----------------e-eeeeCC---------------------------CCcc---c-cccCCEEEEEcC-CEEEEEE
Confidence 0 000000 1222 2 4444444 4456 8888888
Q ss_pred eecCCCCcceEEEeeecCCc--------CccceeEEEEccCCCeEEEEec-C--------CcEEEEEcCCCceeeeeccC
Q 007489 303 LKKGKVGQGEWIINKRQLPR--------KLQFAHSMIFSYDSSQLIIAGH-D--------RRIYVVDVSSSELLHTFTPC 365 (601)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~--------~~~~v~~i~~s~d~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~~~~ 365 (601)
+.. ....+ +....+.. .......++++||+++++++.. . +.+.++|+.+++.+.++..
T Consensus 238 ~~~--~~~~v--~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v- 312 (368)
T 1mda_H 238 IPA--AGATM--KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN- 312 (368)
T ss_dssp CCS--SCCEE--ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-
T ss_pred CCC--CcceE--EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-
Confidence 753 11111 11111110 0112223789999999887654 2 3577999999998888875
Q ss_pred cccccccCCCCCCCeeEEEEccCCCE-EEEEe-cCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 366 REEHDREIQPSEPPITKMFTSSDGQW-LAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 366 ~~~~~~~~~~~~~~i~~l~~spd~~~-las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
......++|+|||++ +++.. .++.|.++|+.+++....++.. .....+++.+
T Consensus 313 -----------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 313 -----------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp -----------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred -----------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 235889999999984 55666 5899999999999998887753 4677787765
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=1.4e-10 Score=109.71 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=104.2
Q ss_pred CeEEEEEcCCCCEEEEEcCC--------------ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc----cCCCe
Q 007489 277 KIICSTISNSGMLFAYSDHV--------------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS----YDSSQ 338 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~~~~--------------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----~d~~~ 338 (601)
.+.+++++++|+++++.... ...+|.++.. +... .+ .........++++ |+++.
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~-~~-----~~~~~~~~~i~~~~~~d~dg~~ 189 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI-QV-----DTAFQFPNGIAVRHMNDGRPYQ 189 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE-EE-----EEEESSEEEEEEEECTTSCEEE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCEE-Ee-----ccCCCCcceEEEecccCCCCCE
Confidence 46677888888776664321 2455555541 2211 11 1112345788999 99976
Q ss_pred EEEE-ecCCcEEEEEcC-CCce-----eeeeccCcccccccCCCCC-CCeeEEEEccCCCEEEEEecCCeEEEEEcCCce
Q 007489 339 LIIA-GHDRRIYVVDVS-SSEL-----LHTFTPCREEHDREIQPSE-PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 410 (601)
Q Consensus 339 l~~~-~~dg~i~vwd~~-~~~~-----~~~~~~~~~~~~~~~~~~~-~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~ 410 (601)
|+++ ..++.|.+||+. +++. ...+.. +. ..+..++++++|+++++...++.|.+||.++++
T Consensus 190 l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-----------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-----------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred EEEEECCCCeEEEEECCCCCccccceEEEECCC-----------CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 6555 457899999976 4432 122222 33 567889999999988888888999999998666
Q ss_pred EEEEeeccCCCceeEEEecCCCCCEEEEE-eCCCeEEEEEcCCCC
Q 007489 411 QHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSNQVYVFDVEAKQ 454 (601)
Q Consensus 411 ~~~~~~~~~~~~v~~l~~~p~~~~~l~~~-~~dg~v~vwd~~~~~ 454 (601)
....+.. +...+.+++|+| +++.|+++ ..++.|..|++....
T Consensus 259 ~~~~~~~-~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 259 PKMRIRC-PFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp CSEEEEC-SSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCB
T ss_pred EeEEEeC-CCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCCC
Confidence 5444443 335789999999 88855554 456899999987643
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.3e-11 Score=131.28 Aligned_cols=250 Identities=9% Similarity=0.002 Sum_probs=148.7
Q ss_pred CCceEEEEEEEeeCC-eEEEEcCC-----CcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCe-------
Q 007489 35 GPELCIWSLLSLRCG-TLVSADST-----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ------- 101 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g-~l~s~~~d-----g~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~------- 101 (601)
+|...+..++||||| +|+.+..+ ..|++||+.+|+.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455689999999999 77665433 3699999999887543 222333468899999 99988776654
Q ss_pred -------EEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccc
Q 007489 102 -------VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSY 174 (601)
Q Consensus 102 -------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 174 (601)
|.+|++.++... -..+.....+...+..+.++ |||+
T Consensus 238 ~~~~~~~v~~~~lgt~~~~-------------~~lv~~~~~~~~~~~~~~~S---------pDG~--------------- 280 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSA-------------DQPVFATPELPKRGHGASVS---------SDGR--------------- 280 (741)
T ss_dssp -CCCCCEEEEEETTSCGGG-------------CEEEECCTTCTTCEEEEEEC---------TTSC---------------
T ss_pred cCCCCCEEEEEECCCCchh-------------CEEEeccCCCCeEEEEEEEC---------CCCC---------------
Confidence 888888665410 00122222233346777887 8887
Q ss_pred cccccCCCCEEEEecCC-----CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecccc
Q 007489 175 HKWAHLGVPMLISAGDD-----TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLE 249 (601)
Q Consensus 175 ~~~~~~~~~~l~s~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~ 249 (601)
.|+..+.+ ..|++||+.+....
T Consensus 281 ---------~l~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------------------------- 307 (741)
T 1yr2_A 281 ---------WVVITSSEGTDPVNTVHVARVTNGKIG-------------------------------------------- 307 (741)
T ss_dssp ---------EEEEEEECTTCSCCEEEEEEEETTEEC--------------------------------------------
T ss_pred ---------EEEEEEEccCCCcceEEEEECCCCCCc--------------------------------------------
Confidence 56555433 26777776541000
Q ss_pred CCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-Ec----CCccEEEEeecCCCCcceEEEeeecCCcCc
Q 007489 250 NNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD----HVKPSLFELKKGKVGQGEWIINKRQLPRKL 324 (601)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (601)
....+... ....... ++|+|+.|+. +. ...|.+|++.. +...|. ..++.+.
T Consensus 308 ----------------~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~---~~~~~~---~l~~~~~ 363 (741)
T 1yr2_A 308 ----------------PVTALIPD-LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG---STPRFD---TVVPESK 363 (741)
T ss_dssp ----------------CCEEEECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS---SSCEEE---EEECCCS
T ss_pred ----------------ccEEecCC-CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC---CccccE---EEecCCC
Confidence 00011111 1222233 3478887777 43 23466666653 111121 1223334
Q ss_pred cceeEEEEccCCCeEEEEecCCcEEEEEcC-CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE----ecCC
Q 007489 325 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV----NCFG 399 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~----~~dg 399 (601)
..+..++++ ++.++++...++..+||.+. +++..+.+..+ ....+..+.++|+++.|+.. ...+
T Consensus 364 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 364 DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP----------GIGSASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS----------SSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC----------CCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 456677777 56677888888887777553 45555555431 35678899999999866633 2357
Q ss_pred eEEEEEcCCceE
Q 007489 400 DVYIFNLEIQRQ 411 (601)
Q Consensus 400 ~i~iwd~~~~~~ 411 (601)
+|++||+.+++.
T Consensus 433 ~i~~~d~~tg~~ 444 (741)
T 1yr2_A 433 TVLALDPATAKT 444 (741)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCcE
Confidence 899999998874
No 211
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.41 E-value=5.5e-09 Score=112.16 Aligned_cols=409 Identities=10% Similarity=0.079 Sum_probs=233.8
Q ss_pred EeeecCCcEEEEECCCCceEEEEEeccCCCCCCCce-EEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcccc-ccc
Q 007489 3 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL-CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFH-KGD 80 (601)
Q Consensus 3 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h-~~~ 80 (601)
-.|+.+| +..||..+++. ..+.... .... .|+++...++|.|..++. +-|..||..+++.......+ ...
T Consensus 102 WigT~~G-l~~yd~~~~~f-~~~~~~~-----~~~~~~i~~i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~ 173 (795)
T 4a2l_A 102 WIGTRDG-LSRYDEEKDIF-QNFFYEK-----NGKHLQVNGIEEISPEQLLISTP-EGLIMFDIKESKFIDDSFSTAMHK 173 (795)
T ss_dssp EEEESSC-EEEEETTTTEE-EEECCEE-----TTEECCCCEEEEEETTEEEEEET-TEEEEEETTTTEEECSSSCHHHHT
T ss_pred EEEeCCc-hheeCCCCCeE-Eeccccc-----cCCCceEEEEEECCCCCEEEEEC-CceEEEECCCCEEEeccCCCCCCc
Confidence 3455444 78888776553 2332100 0111 188999999995555555 45889998766543221111 123
Q ss_pred -eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccc
Q 007489 81 -VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 159 (601)
Q Consensus 81 -V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~ 159 (601)
|.++...+++...+ ++.++.|..|+..++.. .... ...+...|.++... +++
T Consensus 174 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~---------------~~~~-~~~~~~~i~~i~~d---------~~g- 226 (795)
T 4a2l_A 174 TIASTLYRQGDQIYI-GTSTDGLYTYSITQKTF---------------EKVI-PILGTKQIQAILQQ---------SPT- 226 (795)
T ss_dssp CCEEEEEEETTEEEE-EESSSCEEEEETTTCCE---------------EECC-----CCCEEEEEEE---------ETT-
T ss_pred ceEEEEECCCCCEEE-EECCCCEEEEeCCCCeE---------------EEec-CCCCCCeeEEEEEc---------CCC-
Confidence 88898888776554 55555688888776542 0000 11124567777754 444
Q ss_pred ccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 160 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
.|..|..++-|..|+..+............+.......+.++...+++.+.+...+
T Consensus 227 ------------------------~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~ 282 (795)
T 4a2l_A 227 ------------------------RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN 282 (795)
T ss_dssp ------------------------EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS
T ss_pred ------------------------CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC
Confidence 45555555458888876532111000000011112245777777777776666555
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEec-------CCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcce
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSK-------ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE 312 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~ 312 (601)
.+.+++..... ...+... ....|.++...++|.+.+...++-+..|+.... ....
T Consensus 283 Gl~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~--~~~~ 344 (795)
T 4a2l_A 283 DLNIYHEGTDS----------------FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN--RFKN 344 (795)
T ss_dssp CEEEEETTTTE----------------EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG--SSEE
T ss_pred hhheEcCCCCe----------------EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc--cceE
Confidence 66666644221 1111110 135699999999999887777777888876531 1111
Q ss_pred EEEeeecC--CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 313 WIINKRQL--PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 313 ~~~~~~~~--~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
...... .-....|.++...++|. |.+|+.++-|..|+..+++........... ........|.+++..++|+
T Consensus 345 --~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~---~~~l~~~~v~~i~~d~~g~ 418 (795)
T 4a2l_A 345 --IRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDES---ARGIGSNNIKAVYVDEKKS 418 (795)
T ss_dssp --ECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---------CCSCSCEEEEEEETTTT
T ss_pred --EcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCc---ccCCCCccEEEEEEcCCCC
Confidence 111110 11234689999888886 555787777999998766543322110000 0000245799999999998
Q ss_pred EEEEEecCCeEEEEEcCCceEEEEee---ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcC
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWFIS---RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 467 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 467 (601)
.|..|+.++-|.+||..+++...... ......|.++...+ ++.+.+ |+.+ -|.+||..+++........ .+
T Consensus 419 ~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~---~~ 492 (795)
T 4a2l_A 419 LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEK---DG 492 (795)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCT---TC
T ss_pred EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccc---cc
Confidence 56667777779999998876543221 12335789999888 776554 4444 4899999887643321000 00
Q ss_pred cccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCC
Q 007489 468 RRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFG 505 (601)
Q Consensus 468 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~ 505 (601)
..+ ....|.++..+++ +.+|+....++++++..
T Consensus 493 ~~~--~~~~i~~i~~d~~---g~lWigt~~Gl~~~~~~ 525 (795)
T 4a2l_A 493 TPV--VSKQITTLFRDSH---KRLWIGGEEGLSVFKQE 525 (795)
T ss_dssp CBC--CCCCEEEEEECTT---CCEEEEESSCEEEEEEE
T ss_pred ccc--CCceEEEEEECCC---CCEEEEeCCceEEEeCC
Confidence 011 2356888888765 67888877888888764
No 212
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=7.2e-11 Score=123.12 Aligned_cols=81 Identities=9% Similarity=0.115 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
|.|..||+.+++.+..+.. ..++....++.++.+++.++.||.+++||+.+++.++.+...++....-
T Consensus 457 g~l~A~D~~tG~~~W~~~~------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 524 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP 524 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cEEEEEeCCCCcEEeecCC------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCC
Confidence 7799999999998887763 3334455667788899999999999999999999998887655434445
Q ss_pred EEecCCCCCEEEEE
Q 007489 426 AGFPPQNNNVLIIT 439 (601)
Q Consensus 426 l~~~p~~~~~l~~~ 439 (601)
+.|.. +++.+++.
T Consensus 525 ~~y~~-~G~~~v~~ 537 (677)
T 1kb0_A 525 STYMV-DGRQYVSV 537 (677)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred EEEEe-CCEEEEEE
Confidence 66766 77654443
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=4.2e-10 Score=105.29 Aligned_cols=243 Identities=13% Similarity=0.050 Sum_probs=146.0
Q ss_pred CceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCC
Q 007489 36 PELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 113 (601)
Q Consensus 36 h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 113 (601)
+...--+..|+|++ .+++...++.|..||..+++. ..+. +...+.+++++++|+++++. ++.|.+||..++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~- 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA- 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE-
Confidence 33445678888854 566667789999999987654 2332 45689999999999955543 67899999887652
Q ss_pred CCCCCCCccccceeEEecCcc--ccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 114 PNDGLSSSEVIKKWIYVGSVR--AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
..+.... .....+..+++. |+|+ ++++....
T Consensus 86 --------------~~~~~~~~~~~~~~~~di~~d---------~dG~------------------------l~~~~~~~ 118 (297)
T 3g4e_A 86 --------------VVLATVDNDKKNNRFNDGKVD---------PAGR------------------------YFAGTMAE 118 (297)
T ss_dssp --------------EEEEECCTTCSSEEEEEEEEC---------TTSC------------------------EEEEEEEC
T ss_pred --------------EEEEecCCCCCCCCCCCEEEC---------CCCC------------------------EEEecCCc
Confidence 0011110 112345666666 6664 44432111
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
... . . . . ......||.++... .+..+
T Consensus 119 ~~~----------~-~-~-----------------~---------~~~~~~l~~~d~~g---------------~~~~~- 144 (297)
T 3g4e_A 119 ETA----------P-A-V-----------------L---------ERHQGALYSLFPDH---------------HVKKY- 144 (297)
T ss_dssp CSB----------T-T-B-----------------C---------CTTCEEEEEECTTS---------------CEEEE-
T ss_pred ccc----------c-c-c-----------------c---------cCCCcEEEEEECCC---------------CEEEE-
Confidence 000 0 0 0 0 00111233332110 00011
Q ss_pred ecCCCCeEEEEEcCCCCEEEE--EcCCccEEEEeecCCCCcceEEEe-eecCCcCccceeEEEEccCCCeEEEEecCCcE
Q 007489 272 SKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIIN-KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI 348 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i 348 (601)
.........++|+|+++.+.+ ...+.|.+|+++.. .+. +-... -..+.........++++++|++.++....+.|
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~-~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQ-ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCC-EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCc-ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 111244678999999987765 35678888888521 122 10000 01223333466889999999877777778889
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc-cCCCEEEEEec
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS-SDGQWLAAVNC 397 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd~~~las~~~ 397 (601)
.+||..+++.+..+.. +...+++++|+ ||++.|+.++.
T Consensus 223 ~~~d~~tG~~~~~i~~-----------p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKL-----------PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECTTTCCEEEEEEC-----------SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEcCCCceEEEEEEC-----------CCCCceEEEEeCCCCCEEEEEcC
Confidence 9999988998888876 55679999998 89887766554
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=6.5e-12 Score=119.54 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=132.6
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCC-----CCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGK-----VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
..+..+++++...+++++....+.+|++.... .... ++. .....+.. |+.++| |+++|+++ .++.|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~-~~~--~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTP-LTF--KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCC-CCC--SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccccc-ccc--eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 35889999999999999777788899976421 0000 000 00112234 999999 99999998 8899999
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
||+.+......... +...+..+.+.+.. +|+++.||.|.+||+.++.... ....|++++|+|
T Consensus 111 ~dv~sl~~~~~~~~-----------~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSp 172 (388)
T 1xip_A 111 LDLEELSEFRTVTS-----------FEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTN 172 (388)
T ss_dssp EESSSTTCEEEEEE-----------CSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECS
T ss_pred EEchhhhccCccce-----------eecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcC
Confidence 99977665555554 66678888876653 8889999999999999887642 124799999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccc---cCCCcEEEEEeCCCCCCCEEEEE
Q 007489 431 QNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ---EFPGEVIGLSFSPSPSSSSVIIY 494 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~~~~~~~ 494 (601)
+| ++++..||.+++|+.+.++...- .....|..+. +|...|.+|.|.++ ..-+++|
T Consensus 173 -kG--~~vg~~dg~i~~~~~~~~~~~~k---~~I~~Pp~~~~~~~~~~~V~sI~wl~~--~~flv~y 231 (388)
T 1xip_A 173 -SQ--LAVLLKDRSFQSFAWRNGEMEKQ---FEFSLPSELEELPVEEYSPLSVTILSP--QDFLAVF 231 (388)
T ss_dssp -SE--EEEEETTSCEEEEEEETTEEEEE---EEECCCHHHHTSCTTTSEEEEEEESSS--SEEEEEE
T ss_pred -Cc--eEEEEcCCcEEEEcCCCcccccc---ceecCCcccccccCCCeeEEEEEEecC--CeEEEEE
Confidence 88 78899999999999987763110 0011122233 36789999999987 4445555
No 215
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.38 E-value=6.4e-11 Score=113.02 Aligned_cols=294 Identities=14% Similarity=0.176 Sum_probs=170.4
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
|..|+.++.|..|| .+|+.+.... .+...+.++...++|.|..++.+ |..+|. +++.+..+.......
T Consensus 33 l~v~t~~~~l~~~d-~~g~~~~~~~--------~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~ 100 (330)
T 3hxj_A 33 IYLGSSNKNLYAIN-TDGSVKWFFK--------SGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIV 100 (330)
T ss_dssp EECSSTTTTTEEEC-TTSCEEESSC--------GGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred EEEEcCCCEEEEEC-CCCcEEEEEe--------cCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcc
Confidence 45666777788888 7777755543 34455677777777766666555 777776 566665555433333
Q ss_pred EEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 82 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 82 ~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
....+. +..|+.++.++.|..+|.. +.. .|.. ..+...+.++... +++
T Consensus 101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-------------~~~~----~~~~~~~~~~~~~---------~~g--- 148 (330)
T 3hxj_A 101 SDFTIF--EDILYVTSMDGHLYAINTD-GTE-------------KWRF----KTKKAIYATPIVS---------EDG--- 148 (330)
T ss_dssp CCEEEE--TTEEEEECTTSEEEEECTT-SCE-------------EEEE----ECSSCCCSCCEEC---------TTS---
T ss_pred cCceEE--CCEEEEEecCCEEEEEcCC-CCE-------------EEEE----cCCCceeeeeEEc---------CCC---
Confidence 333333 4556677777778877766 431 2221 1122223333332 233
Q ss_pred ccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCee
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 241 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 241 (601)
.++.++.++.|..+|.. ...
T Consensus 149 ----------------------~l~vgt~~~~l~~~d~~-g~~------------------------------------- 168 (330)
T 3hxj_A 149 ----------------------TIYVGSNDNYLYAINPD-GTE------------------------------------- 168 (330)
T ss_dssp ----------------------CEEEECTTSEEEEECTT-SCE-------------------------------------
T ss_pred ----------------------EEEEEcCCCEEEEECCC-CCE-------------------------------------
Confidence 45556666777777654 110
Q ss_pred EEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCC
Q 007489 242 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP 321 (601)
Q Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 321 (601)
+|. ... ....+.++.+.+++.+++.+ +.+..++ .. +..+|....
T Consensus 169 -~~~------------------------~~~-~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~---g~~~~~~~~---- 212 (330)
T 3hxj_A 169 -KWR------------------------FKT-NDAITSAASIGKDGTIYFGS--DKVYAIN-PD---GTEKWNFYA---- 212 (330)
T ss_dssp -EEE------------------------EEC-SSCCCSCCEECTTCCEEEES--SSEEEEC-TT---SCEEEEECC----
T ss_pred -eEE------------------------Eec-CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC---CcEEEEEcc----
Confidence 011 110 11234445566677765555 7777777 32 555554432
Q ss_pred cCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 322 RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 322 ~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
....+.++...++|. |.+++.++.|..+|. +++.+..+.. ....+..+.+.+++ .|..++.+|.|
T Consensus 213 -~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~-----------~~~~~~~~~~~~~g-~l~v~t~~ggl 277 (330)
T 3hxj_A 213 -GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT-----------GKRIESSPVIGNTD-TIYFGSYDGHL 277 (330)
T ss_dssp -SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC-----------SSCCCSCCEECTTS-CEEEECTTCEE
T ss_pred -CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC-----------CCCccccceEcCCC-eEEEecCCCCE
Confidence 124567788888874 556777888888874 5666665554 23334445666566 46677788889
Q ss_pred EEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 402 YIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 402 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
..+|. +++..+.... ....+.++...+ ++. |.+++.+|.+++...+..+
T Consensus 278 ~~~d~-~g~~~~~~~~-~~~~~~~~~~d~-~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 278 YAINP-DGTEKWNFET-GSWIIATPVIDE-NGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEECT-TSCEEEEEEC-SSCCCSCCEECT-TCC-EEEECTTSCEEEEEC----
T ss_pred EEECC-CCcEEEEEEc-CCccccceEEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence 99996 5666555543 334567777766 664 7779999999988776543
No 216
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.38 E-value=3.2e-08 Score=106.21 Aligned_cols=398 Identities=10% Similarity=0.057 Sum_probs=233.6
Q ss_pred eeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc-------c
Q 007489 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-------F 76 (601)
Q Consensus 4 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~-------~ 76 (601)
.|+.++-|..||..+++....... .+...|.++...++|.|..|+.++-|.+||..+++...... -
T Consensus 188 igt~~~Gl~~~~~~~~~~~~~~~~-------~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l 260 (795)
T 4a2l_A 188 IGTSTDGLYTYSITQKTFEKVIPI-------LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSI 260 (795)
T ss_dssp EEESSSCEEEEETTTCCEEECC-----------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSC
T ss_pred EEECCCCEEEEeCCCCeEEEecCC-------CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcccc
Confidence 355544578888776654332110 23456899998889966666655458899987665332111 1
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecC-----ccccccceeEEEeeccccC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-----VRAHTHDVRALTVAVPISR 151 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~ 151 (601)
....|.++...++|...+ |+.+ -|.+|+..++.. ..... .......|.++...
T Consensus 261 ~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~i~~i~~D----- 318 (795)
T 4a2l_A 261 SSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSF---------------ASYSSNPVENGSLSQRSVRSIFMD----- 318 (795)
T ss_dssp SCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEE---------------EEECCCTTSTTSCSSSCEEEEEEC-----
T ss_pred CCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeE---------------EEEecCCCCCCCCCCCcEEEEEEe-----
Confidence 245799999998887555 4444 588888766542 11110 11124568888765
Q ss_pred CCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCe
Q 007489 152 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 152 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
++| .|..|+.++-|..++...... ........+.......|.++...+++
T Consensus 319 ----~~g-------------------------~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 319 ----SQG-------------------------GMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp ----TTS-------------------------CEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred ----CCc-------------------------CEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 454 566777777788888654321 10000000111122456677777777
Q ss_pred EEEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe--------cCCCCeEEEEEcCCCC-EEEEEcCCccEEE
Q 007489 232 LLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS--------KASRKIICSTISNSGM-LFAYSDHVKPSLF 301 (601)
Q Consensus 232 ~~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~-~l~~~~~~~v~l~ 301 (601)
.+.+.. .+.+..|+..... ...+.. -....|.+++..++|+ +.+...++.+.+|
T Consensus 369 ~lWiGt~~~Gl~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 369 NLWIGTNDGGLNLYNPITQR----------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp CEEEEESSSCEEEECTTTCC----------------EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CEEEEECCCCeEEEcCCCCc----------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 655544 4577777755332 111110 1135688999989998 5555555678888
Q ss_pred EeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCee
Q 007489 302 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 381 (601)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 381 (601)
+... + ................|.++...++|.+.+ |+.+ .+.+||..+++... +..... ........|.
T Consensus 433 d~~~---~-~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~-~~~~~~----~~~~~~~~i~ 501 (795)
T 4a2l_A 433 HRNS---G-QVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTT-IEKEKD----GTPVVSKQIT 501 (795)
T ss_dssp ETTT---C-CEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEE-CCBCTT----CCBCCCCCEE
T ss_pred eCCC---C-cEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEE-cccccc----ccccCCceEE
Confidence 7654 2 121111100012235788999888886554 4554 48999987665432 221000 0000346799
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee------ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 382 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS------RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 382 ~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
++...++|++.+... . -|..|+..+++. .+. ......|.++...+ ++.+.+ ++.. -|..||..+++.
T Consensus 502 ~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gT~~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 502 TLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS-NGIIWV-GTRE-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT-TSCEEE-EESS-CEEEEETTTTEE
T ss_pred EEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC-CCCEEE-EeCC-CceeECCCCCcE
Confidence 999999998766554 4 488999887765 222 12235688999888 777554 4444 588999887764
Q ss_pred ccchhcccCCcCcccccC-CCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 456 GEWSMQHTFVLPRRYQEF-PGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
...... .+. ...|.++..+++ +.+|+.+..+++.++...
T Consensus 575 ~~~~~~---------~gl~~~~i~~i~~d~~---g~lWi~t~~Gl~~~~~~~ 614 (795)
T 4a2l_A 575 KRYNTT---------NGLPNNVVYGILEDSF---GRLWLSTNRGISCFNPET 614 (795)
T ss_dssp EEECGG---------GTCSCSCEEEEEECTT---SCEEEEETTEEEEEETTT
T ss_pred EEeCCC---------CCCchhheEEEEECCC---CCEEEEcCCceEEEcCCC
Confidence 332111 111 245888887765 689999999999998753
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=4.6e-10 Score=109.71 Aligned_cols=258 Identities=11% Similarity=0.104 Sum_probs=153.7
Q ss_pred ceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCC--eEEEEEeccCcCC
Q 007489 37 ELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASCESIG 113 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vw~~~~~~~~ 113 (601)
-...+.|+|+++| .+++...++.|++||..+++....... ..... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence 3568899999999 566666779999999987766544443 22333 99999999999998866 788888765431
Q ss_pred CCCCCCCccccceeEEecCccc-cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 114 PNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
......+.. ....+.+++++ |++. .|+.+..++
T Consensus 207 -------------~~~~g~~~~~~~~~p~~iav~---------p~~g------------------------~lyv~d~~~ 240 (409)
T 3hrp_A 207 -------------PTRIGQLGSTFSGKIGAVALD---------ETEE------------------------WLYFVDSNK 240 (409)
T ss_dssp -------------EEEEEECCTTSCSCCCBCEEC---------TTSS------------------------EEEEECTTC
T ss_pred -------------eEEeeeccchhcCCcEEEEEe---------CCCC------------------------eEEEEECCC
Confidence 000111111 34556777876 6332 455566678
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.|+.|+..+... ..+... ... +
T Consensus 241 ~I~~~d~~~~~~---------------------------~~~~~~---------~~~----------g------------ 262 (409)
T 3hrp_A 241 NFGRFNVKTQEV---------------------------TLIKQL---------ELS----------G------------ 262 (409)
T ss_dssp EEEEEETTTCCE---------------------------EEEEEC---------CCC----------S------------
T ss_pred cEEEEECCCCCE---------------------------EEEecc---------ccc----------C------------
Confidence 899998764210 000000 000 0
Q ss_pred cCCCCe-EEEEEcCC-CCEEEE-EcCCccEEEEeecCCCCcceEEEeeec-CC---------cCccceeEEEEccCCCeE
Q 007489 273 KASRKI-ICSTISNS-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQ-LP---------RKLQFAHSMIFSYDSSQL 339 (601)
Q Consensus 273 ~~~~~i-~~~~~s~~-g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~---------~~~~~v~~i~~s~d~~~l 339 (601)
...... ..++++|+ +.++++ ...+.|+.|+.+. .... +.... .. ........++++++|+++
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g---~~~~--~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG---ECEW--FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC---CEEE--EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC---CEEE--EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence 000111 27889995 444444 3556666665542 1111 11110 00 112346899999999977
Q ss_pred EEEe-cCCcEEEEEcCCCceeeeeccCcccc---c-ccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 340 IIAG-HDRRIYVVDVSSSELLHTFTPCREEH---D-REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 340 ~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
++-. .++.|+.|++.+++. .++.+..... + ......-.....++++++|.++++-..+++|+.++++
T Consensus 338 vad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 7766 788999999877764 3343320000 0 0000112468899999998888888888899888753
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.36 E-value=1.9e-10 Score=120.22 Aligned_cols=80 Identities=9% Similarity=0.109 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
|.|..||+.+++.+..+.. + ..+..-.++..+.++++++.||.|+.||.++++.++.+....+....-
T Consensus 455 g~l~A~D~~tG~~~W~~~~-----------~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 522 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPY-----------V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAP 522 (689)
T ss_dssp EEEEEEETTTTEEEEEEEE-----------S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred eeEEEEECCCCCeEeEccC-----------C-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCc
Confidence 7799999999998887764 2 223334566688899999999999999999999998887654433345
Q ss_pred EEecCCCCCEEEE
Q 007489 426 AGFPPQNNNVLII 438 (601)
Q Consensus 426 l~~~p~~~~~l~~ 438 (601)
+.|.. +++..++
T Consensus 523 ~ty~~-~G~qyv~ 534 (689)
T 1yiq_A 523 VTYSV-DGEQYVT 534 (689)
T ss_dssp EEEEE-TTEEEEE
T ss_pred eEEEE-CCEEEEE
Confidence 67777 6664433
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=7.5e-10 Score=103.58 Aligned_cols=189 Identities=9% Similarity=-0.008 Sum_probs=120.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---------C
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD---------R 346 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d---------g 346 (601)
..+.+++++++|+++++. ++.|.+|+... +... .+...........++.++++|+|+++++.... .
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~---g~~~-~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKE---QSAV-VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTT---TEEE-EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCC---CcEE-EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence 568899999999965554 56788887653 2211 11111111123457899999999876654322 2
Q ss_pred cEEEEEcCC-CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEE-EecCCeEEEEEc--CCceEE--EEeecc--
Q 007489 347 RIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA-VNCFGDVYIFNL--EIQRQH--WFISRL-- 418 (601)
Q Consensus 347 ~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las-~~~dg~i~iwd~--~~~~~~--~~~~~~-- 418 (601)
.-.||.+.. ++...... .....+.++|+||++.|+. .+.++.|.+|++ .++... ..+...
T Consensus 129 ~~~l~~~d~~g~~~~~~~------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~ 196 (297)
T 3g4e_A 129 QGALYSLFPDHHVKKYFD------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK 196 (297)
T ss_dssp CEEEEEECTTSCEEEEEE------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred CcEEEEEECCCCEEEEee------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC
Confidence 234555432 33332222 3345688999999997754 456789999997 444321 122222
Q ss_pred CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeC-CCCCCCEEEEEc
Q 007489 419 EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFS-PSPSSSSVIIYS 495 (601)
Q Consensus 419 ~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~~~~~~~~ 495 (601)
....+..+++.+ ++++.++....+.|.+||.+++++ ...+..+...+++++|. |+ .+.+++-+
T Consensus 197 ~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~-----------~~~i~~p~~~~t~~~f~g~d--~~~L~vt~ 260 (297)
T 3g4e_A 197 EEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKR-----------LQTVKLPVDKTTSCCFGGKN--YSEMYVTC 260 (297)
T ss_dssp GGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCE-----------EEEEECSSSBEEEEEEESGG--GCEEEEEE
T ss_pred CCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceE-----------EEEEECCCCCceEEEEeCCC--CCEEEEEc
Confidence 124678999999 898777777788999999997774 22344444679999998 66 45666554
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=7.3e-10 Score=108.27 Aligned_cols=255 Identities=13% Similarity=0.070 Sum_probs=152.7
Q ss_pred cceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcc
Q 007489 79 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 79 ~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
.....|+|+++++.+++...++.|++||..++.. ..+........ ++++ +++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~------------------~~~~~~~~~~~-ia~~---------~~g 182 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV------------------TTVHPGFKGGK-PAVT---------KDK 182 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE------------------EEEEETCCBCB-CEEC---------TTS
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE------------------EEeeccCCCCc-eeEe---------cCC
Confidence 4678999999999777777789999999987653 11111122233 7776 777
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCC--eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT--KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 236 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (601)
+ .|+++..++ .|..++........
T Consensus 183 ~------------------------~l~~~d~~~~~~I~~~d~~~~~~~~------------------------------ 208 (409)
T 3hrp_A 183 Q------------------------RVYSIGWEGTHTVYVYMKASGWAPT------------------------------ 208 (409)
T ss_dssp S------------------------EEEEEBSSTTCEEEEEEGGGTTCEE------------------------------
T ss_pred C------------------------cEEEEecCCCceEEEEEcCCCceeE------------------------------
Confidence 5 777777765 78888765411000
Q ss_pred eCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEEEcCCccEEEEeecCCCCcceEEE
Q 007489 237 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYSDHVKPSLFELKKGKVGQGEWII 315 (601)
Q Consensus 237 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~ 315 (601)
.+..+.......+.+++++| ++.++++..++.|+.|+... ....+ +
T Consensus 209 -----------------------------~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~--~~~~~--~ 255 (409)
T 3hrp_A 209 -----------------------------RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT--QEVTL--I 255 (409)
T ss_dssp -----------------------------EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT--CCEEE--E
T ss_pred -----------------------------EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC--CCEEE--E
Confidence 00000000124467788999 55555544566677777654 11111 1
Q ss_pred eeecCCcCccce--eEEEEccC-CCeEEEEecCCcEEEEEcCCCceeeeeccCccccc----ccCCCCCCCeeEEEEccC
Q 007489 316 NKRQLPRKLQFA--HSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD----REIQPSEPPITKMFTSSD 388 (601)
Q Consensus 316 ~~~~~~~~~~~v--~~i~~s~d-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~spd 388 (601)
......+....- ..++|+|+ +.++++-..++.|+.|+.. ++ +..+.+...... ......-.....++++|+
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 111112222121 39999995 5455555567889999875 33 333332110000 000001245789999999
Q ss_pred CCEEEEEe-cCCeEEEEEcCCceEEEEeecc--C-----------CCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 389 GQWLAAVN-CFGDVYIFNLEIQRQHWFISRL--E-----------GASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 389 ~~~las~~-~dg~i~iwd~~~~~~~~~~~~~--~-----------~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
|+++++-. .+++|+.|++.++......... . -..+..+++++ ++.++++-..++.|+.++++
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEEC
T ss_pred CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEeC
Confidence 99777777 7899999998777654333220 0 13588999999 88777777778899888764
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=3.6e-10 Score=119.07 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=75.0
Q ss_pred EccCCCeEEEEec----CCcEEEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC---eEE
Q 007489 332 FSYDSSQLIIAGH----DRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVY 402 (601)
Q Consensus 332 ~s~d~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg---~i~ 402 (601)
++++|..|+..+. .+.|..+|+.++.. ...+.. +...+. .|++++++|+....++ .|+
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~-----------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP-----------ERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-----------CCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-----------CCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 5566666554443 25789999877653 345555 444444 8999999888766543 689
Q ss_pred EEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCC----CeEEEEEcCCCCcccc
Q 007489 403 IFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS----NQVYVFDVEAKQLGEW 458 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d----g~v~vwd~~~~~~~~~ 458 (601)
+|+++++... .+.......+..+.+++ +++.|+....+ ++|+.||+.+++...+
T Consensus 354 ~~d~~g~~~~-~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 354 QFDYEGKRVR-EVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp EECTTSCEEE-EECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred EEECCCCeeE-EeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 9999866543 44322334677888888 77777666554 8999999988875443
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.29 E-value=1.5e-10 Score=110.08 Aligned_cols=273 Identities=9% Similarity=-0.067 Sum_probs=159.4
Q ss_pred EEEEcCCC----cEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe----------eCCeEEEEEeccCcCCCCC
Q 007489 51 LVSADSTG----SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPND 116 (601)
Q Consensus 51 l~s~~~dg----~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vw~~~~~~~~~~~ 116 (601)
+++-..++ +|.+.|..+++.+.++..-..+ .+.++||+++++.+. .++.|.+||+.+.+.
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---- 108 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---- 108 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE----
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE----
Confidence 44444444 7889999999999998855555 799999999999875 478999999999874
Q ss_pred CCCCccccceeEEecCcccc-------ccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEec
Q 007489 117 GLSSSEVIKKWIYVGSVRAH-------THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 189 (601)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 189 (601)
...+..+ ......++++ |||+ .++.+.
T Consensus 109 -------------v~~I~v~~~~~~~~g~~P~~ia~S---------pDGk------------------------~lyVan 142 (368)
T 1mda_H 109 -------------IADIELPDAPRFSVGPRVHIIGNC---------ASSA------------------------CLLFFL 142 (368)
T ss_dssp -------------EEEEEETTSCSCCBSCCTTSEEEC---------TTSS------------------------CEEEEE
T ss_pred -------------EEEEECCCccccccCCCcceEEEc---------CCCC------------------------EEEEEc
Confidence 3333222 1345677887 8887 666665
Q ss_pred C--CCeEEE--EeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcc
Q 007489 190 D--DTKLFA--YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 265 (601)
Q Consensus 190 ~--d~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 265 (601)
. +..+.+ +|..+..
T Consensus 143 ~~~~~~v~V~~iD~~tv~-------------------------------------------------------------- 160 (368)
T 1mda_H 143 FGSSAAAGLSVPGASDDQ-------------------------------------------------------------- 160 (368)
T ss_dssp CSSSCEEEEEETTTEEEE--------------------------------------------------------------
T ss_pred cCCCCeEEEEEEchhhce--------------------------------------------------------------
Confidence 4 346777 7765400
Q ss_pred eEEEEEecCCCCeEEEEEcCCCC--EEEEEcCCccEEEEeecCC--CCcceEEEeeecCCcCccceeEEEEccCCCeEEE
Q 007489 266 LLVQVKSKASRKIICSTISNSGM--LFAYSDHVKPSLFELKKGK--VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 341 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~ 341 (601)
++..++. ..+.|+++ +++.+.++.+.+.++.... .+...+.. .....-...+. + ++++..++.
T Consensus 161 ---~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~-t~~i~vg~~P~---~-~~~~~~~~~ 227 (368)
T 1mda_H 161 ---LTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC-TGAQNCSSQAA---Q-ANYPGMLVW 227 (368)
T ss_dssp ---EEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS-CTTSCBCSCCE---E-ETTTTEEEE
T ss_pred ---EEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe-eeeeeCCCCcc---c-cccCCEEEE
Confidence 0000000 00112221 1222445555554443200 00110000 00011111222 3 666667666
Q ss_pred EecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec---------CCeEEEEEcCCce
Q 007489 342 AGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---------FGDVYIFNLEIQR 410 (601)
Q Consensus 342 ~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~---------dg~i~iwd~~~~~ 410 (601)
.+. +.|.+.|+.... .+..+...... .............++++||++.++.+.. ++.+.++|+.+.+
T Consensus 228 vs~-~~V~viD~~~~~~~v~~~~~~~~~~-~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~ 305 (368)
T 1mda_H 228 AVA-SSILQGDIPAAGATMKAAIDGNESG-RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp CBS-SCCEEEECCSSCCEEECCCCSSCTH-HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EcC-CEEEEEECCCCcceEEEEEEecccc-ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence 677 999999986432 33322210000 0000001111223689999998886543 2357799999999
Q ss_pred EEEEeeccCCCceeEEEecCCCCCE-EEEEe-CCCeEEEEEcCCCCc
Q 007489 411 QHWFISRLEGASVTAAGFPPQNNNV-LIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 411 ~~~~~~~~~~~~v~~l~~~p~~~~~-l~~~~-~dg~v~vwd~~~~~~ 455 (601)
....++.. ..+..|+|+| |+++ +++.. .++.|.++|+.+.+.
T Consensus 306 vv~~i~vg--~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 306 TSGPISNG--HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEECCEEE--EEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEEEEECC--CCcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcE
Confidence 87777643 3689999999 8874 55555 589999999999875
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=1.3e-09 Score=102.44 Aligned_cols=250 Identities=11% Similarity=0.007 Sum_probs=140.6
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
........++|+|+| .+++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. +..
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 345567789999998 4667778899999998 454 34555567788999999999977666666889999875 331
Q ss_pred CCCCCCCCccccceeEEecCccc-cccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
... ...... ....+..+++. ++|+ ++++
T Consensus 119 ------------~~~--~~~~~~~~~~~~~~i~~d---------~dG~------------------------l~~t---- 147 (305)
T 3dr2_A 119 ------------HLL--VGRYAGKRLNSPNDLIVA---------RDGA------------------------IWFT---- 147 (305)
T ss_dssp ------------EEE--ECEETTEECSCCCCEEEC---------TTSC------------------------EEEE----
T ss_pred ------------EEE--EeccCCCccCCCCCEEEC---------CCCC------------------------EEEe----
Confidence 000 000000 11234455554 5553 4443
Q ss_pred CeEEEEecccc--CCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 192 TKLFAYCANEF--TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 192 ~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
|..-. ........ .. ..+...||.++..... +..
T Consensus 148 ------d~~~g~~~~~~~~~~--~~----------------------~~~~~~v~~~d~~~g~--------------~~~ 183 (305)
T 3dr2_A 148 ------DPPFGLRKPSQGCPA--DP----------------------ELAHHSVYRLPPDGSP--------------LQR 183 (305)
T ss_dssp ------CCSGGGSCGGGSCCC--CC----------------------SSSCEEEEEECSSSCC--------------CEE
T ss_pred ------CcCCCcccccccccc--cc----------------------ccCCCeEEEEcCCCCc--------------EEE
Confidence 21100 00000000 00 0011122222211100 001
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEE-cC------CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 270 VKSKASRKIICSTISNSGMLFAYS-DH------VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~~-~~------~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
+. .......++|+||++.|+++ .. +.|.+|++.. .. +-... ............++++++|++. ++
T Consensus 184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~---~~-l~~~~-~~~~~~~~~pdgi~~d~~G~lw-v~ 255 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD---GA-LHDRR-HFASVPDGLPDGFCVDRGGWLW-SS 255 (305)
T ss_dssp EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET---TE-EEEEE-EEECCSSSCCCSEEECTTSCEE-EC
T ss_pred Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC---CC-ccCCe-EEEECCCCCCCeEEECCCCCEE-Ee
Confidence 11 12456789999999977664 33 5788888874 11 11111 1111112334678999999844 44
Q ss_pred ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 343 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 343 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
+.+ .|.+|+. +++.+..+.. .. .+.+++|+|+++.|..++.++ +..++
T Consensus 256 ~~~-gv~~~~~-~g~~~~~~~~-----------~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 256 SGT-GVCVFDS-DGQLLGHIPT-----------PG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CSS-EEEEECT-TSCEEEEEEC-----------SS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred cCC-cEEEECC-CCCEEEEEEC-----------CC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 444 4999997 5777777764 33 588999999999888887765 44333
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=1.8e-09 Score=101.48 Aligned_cols=244 Identities=13% Similarity=0.121 Sum_probs=147.7
Q ss_pred hhhhccccccceEEEEEeCCCC-EEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeecc
Q 007489 70 LLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 148 (601)
Q Consensus 70 ~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 148 (601)
.+..+..+.......+|+++|+ .+++...++.|..|+.. +. ...+..+...+..+++.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~------------------~~~~~~~~~~~~gl~~d-- 94 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT------------------VDVLLDATAFTNGNAVD-- 94 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC------------------EEEEEESCSCEEEEEEC--
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC------------------EEEEeCCCCccceeeEC--
Confidence 3444544556678899999998 55677778999999873 33 22334455677888887
Q ss_pred ccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccC
Q 007489 149 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 228 (601)
Q Consensus 149 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (601)
++|+ ++++...++.|..|+... . +..
T Consensus 95 -------~dG~------------------------l~v~~~~~~~v~~~~~~g-~-~~~--------------------- 120 (305)
T 3dr2_A 95 -------AQQR------------------------LVHCEHGRRAITRSDADG-Q-AHL--------------------- 120 (305)
T ss_dssp -------TTSC------------------------EEEEETTTTEEEEECTTS-C-EEE---------------------
T ss_pred -------CCCC------------------------EEEEECCCCEEEEECCCC-C-EEE---------------------
Confidence 7775 666655667888887542 1 000
Q ss_pred CCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE----EcC---------
Q 007489 229 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY----SDH--------- 295 (601)
Q Consensus 229 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~~--------- 295 (601)
++ . .........+..++++++|+++++ +..
T Consensus 121 -----~~---------~-----------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 121 -----LV---------G-----------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp -----EE---------C-----------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred -----EE---------e-----------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 00 0 000000133556778888887775 211
Q ss_pred ---CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC------CcEEEEEcCCCcee--eeecc
Q 007489 296 ---VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD------RRIYVVDVSSSELL--HTFTP 364 (601)
Q Consensus 296 ---~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d------g~i~vwd~~~~~~~--~~~~~ 364 (601)
+.-.||.++........ +. .......++|+||++.|+++... +.|.+|++..+... ..+..
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~--~~------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 235 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQR--MA------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS 235 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEE--EE------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC
T ss_pred cccCCCeEEEEcCCCCcEEE--Ee------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE
Confidence 12345555431111111 11 22345789999999988887765 68999998754311 11211
Q ss_pred CcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCe
Q 007489 365 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ 444 (601)
Q Consensus 365 ~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~ 444 (601)
. .......++++++|++.++ +.+| |.+|+.+ ++....+.... .+.+++|+| +++.|.+++.++
T Consensus 236 ~----------~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~~-g~~~~~~~~~~--~~~~~~f~~-d~~~L~it~~~~- 298 (305)
T 3dr2_A 236 V----------PDGLPDGFCVDRGGWLWSS-SGTG-VCVFDSD-GQLLGHIPTPG--TASNCTFDQ-AQQRLFITGGPC- 298 (305)
T ss_dssp C----------SSSCCCSEEECTTSCEEEC-CSSE-EEEECTT-SCEEEEEECSS--CCCEEEECT-TSCEEEEEETTE-
T ss_pred C----------CCCCCCeEEECCCCCEEEe-cCCc-EEEECCC-CCEEEEEECCC--ceeEEEEeC-CCCEEEEEcCCe-
Confidence 0 2234567899999995544 4444 9999985 44444554332 588999998 888888888764
Q ss_pred EEEEEc
Q 007489 445 VYVFDV 450 (601)
Q Consensus 445 v~vwd~ 450 (601)
++.+++
T Consensus 299 l~~~~~ 304 (305)
T 3dr2_A 299 LWMLPL 304 (305)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 444443
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=1.9e-13 Score=132.08 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=61.2
Q ss_pred CEEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhcccccc
Q 007489 1 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 79 (601)
Q Consensus 1 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~ 79 (601)
+|++|+.||.|+.||..+|+.+.++.. ..+.+..+..++ .+++++.||.|+.||..+|+.+..+..+..
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 378899999999999999999999872 234444455677 777788999999999999988766554322
Q ss_pred c-eE-EEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 80 D-VN-ALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 80 ~-V~-~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
. +. +..+. ++..+++++.|+.|..||..+++.
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~ 114 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK 114 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC----
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE
Confidence 1 11 11111 355678888899999999988773
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=1.5e-09 Score=113.45 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=108.4
Q ss_pred EEEEcCCCCEEEEE-cCC-------------------ccEEEEeecCCCCcceEEEeeecCCc----CccceeEEEEccC
Q 007489 280 CSTISNSGMLFAYS-DHV-------------------KPSLFELKKGKVGQGEWIINKRQLPR----KLQFAHSMIFSYD 335 (601)
Q Consensus 280 ~~~~s~~g~~l~~~-~~~-------------------~v~l~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~s~d 335 (601)
.++++|++..++++ .++ .|..+|..+ +..+|......... ...+........+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T---G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~ 315 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT---GEYVWHYQTTPGDAWDYTATQHMILAELPID 315 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT---CCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC---CceeEeeecCCcccccccCCCCcEEEeeccC
Confidence 46777877777774 332 377777765 78888765321110 1112222233336
Q ss_pred CC---eEEEEecCCcEEEEEcCCCceeeeeccCccc----------------------cccc----CCC--CCCCeeEEE
Q 007489 336 SS---QLIIAGHDRRIYVVDVSSSELLHTFTPCREE----------------------HDRE----IQP--SEPPITKMF 384 (601)
Q Consensus 336 ~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------------~~~~----~~~--~~~~i~~l~ 384 (601)
|+ .++.++.+|.++++|..+|+++......... .... ... -...-..++
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a 395 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS 395 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence 65 7888999999999999999987443321100 0000 000 000112378
Q ss_pred EccCCCEEEEEec---------------------------------------------CCeEEEEEcCCceEEEEeeccC
Q 007489 385 TSSDGQWLAAVNC---------------------------------------------FGDVYIFNLEIQRQHWFISRLE 419 (601)
Q Consensus 385 ~spd~~~las~~~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~ 419 (601)
++|+..++++... +|.|+.||+.+++..+.++..
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~- 474 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV- 474 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-
Confidence 9999888876532 378999999999999887643
Q ss_pred CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 420 GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 420 ~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.++..-.+.. .+.++++++.||.|+.||.++++.
T Consensus 475 -~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 475 -TIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp -SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred -CCccCccceE-CCCEEEEECCCCcEEEEECCCCcc
Confidence 2333335555 678999999999999999999984
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=1.4e-08 Score=98.67 Aligned_cols=275 Identities=15% Similarity=0.160 Sum_probs=164.4
Q ss_pred CCeEEEEcCCCcEEEeeCCccchhhhcccc---------ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCC
Q 007489 48 CGTLVSADSTGSVQFWDSRHGTLLQAHSFH---------KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL 118 (601)
Q Consensus 48 ~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h---------~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 118 (601)
++.++.++.++.|..+|..+|+.+..+... ...+.+ ....++..++.++.++.|..+|..+++.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~------ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV------ 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE------
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE------
Confidence 568888888999999999999987655432 122222 2222467788888899999999998873
Q ss_pred CCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEe
Q 007489 119 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 198 (601)
Q Consensus 119 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~ 198 (601)
.|.... .........+ .+ ..++.++.++.|..+|
T Consensus 126 -------~W~~~~----~~~~~~~p~~----------~~-------------------------~~v~v~~~~g~l~~~d 159 (376)
T 3q7m_A 126 -------AWQTKV----AGEALSRPVV----------SD-------------------------GLVLIHTSNGQLQALN 159 (376)
T ss_dssp -------EEEEEC----SSCCCSCCEE----------ET-------------------------TEEEEECTTSEEEEEE
T ss_pred -------EEEEeC----CCceEcCCEE----------EC-------------------------CEEEEEcCCCeEEEEE
Confidence 343321 1111111111 11 2788888899999999
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
..+.+. +|........ .... .....
T Consensus 160 ~~tG~~--------------------------------------~W~~~~~~~~---------------~~~~-~~~~~- 184 (376)
T 3q7m_A 160 EADGAV--------------------------------------KWTVNLDMPS---------------LSLR-GESAP- 184 (376)
T ss_dssp TTTCCE--------------------------------------EEEEECCC--------------------C-CCCCC-
T ss_pred CCCCcE--------------------------------------EEEEeCCCCc---------------eeec-CCCCc-
Confidence 876331 1222111000 0000 00001
Q ss_pred EEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCc--cceeEEEEcc--CCCeEEEEecCCcEEEEEcC
Q 007489 279 ICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSY--DSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 279 ~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~s~--d~~~l~~~~~dg~i~vwd~~ 354 (601)
.+. ++..++...++.+..++..+ +..+|........... ..+..+...| .+..+++++.++.+..+|..
T Consensus 185 ---~~~-~~~v~~g~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 185 ---TTA-FGAAVVGGDNGRVSAVLMEQ---GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp ---EEE-TTEEEECCTTTEEEEEETTT---CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred ---EEE-CCEEEEEcCCCEEEEEECCC---CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 111 33333335677788888765 6777765432111100 0000000111 24577888889999999999
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCC
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
+++.+..... .....+.. ++..|+.++.++.|..+|..+++..+.........+...... +.
T Consensus 258 tG~~~w~~~~-------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~ 319 (376)
T 3q7m_A 258 SGQIMWKREL-------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NG 319 (376)
T ss_dssp TCCEEEEECC-------------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TT
T ss_pred CCcEEeeccC-------------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CC
Confidence 9988766543 12344444 567888888999999999999998887663333333334443 45
Q ss_pred EEEEEeCCCeEEEEEcCCCCc
Q 007489 435 VLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.|++++.+|.|+++|..+++.
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCeEEEEECCCCcE
Confidence 788999999999999999875
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=6.7e-09 Score=98.42 Aligned_cols=186 Identities=11% Similarity=-0.003 Sum_probs=116.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec------CCcEE
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH------DRRIY 349 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~------dg~i~ 349 (601)
..+.+++++++|++++++.+ .|.+|+... +... .+...........+..++++|+|+++++... .+.|.
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~---g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTAT---GVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTT---CCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCC---CcEE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 56888999999988777643 477777653 2211 1111110111246789999999987665432 24566
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE-ecCCeEEEEEcC--Cc-eE--EEEeecc--CCC
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV-NCFGDVYIFNLE--IQ-RQ--HWFISRL--EGA 421 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~-~~dg~i~iwd~~--~~-~~--~~~~~~~--~~~ 421 (601)
.++ +++... +.. .......++|+||++.|+.+ +.++.|.+|+++ ++ +. ...+... ...
T Consensus 165 ~~~--~g~~~~-~~~-----------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~ 230 (326)
T 2ghs_A 165 HVA--KGKVTK-LFA-----------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG 230 (326)
T ss_dssp EEE--TTEEEE-EEE-----------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred EEe--CCcEEE-eeC-----------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC
Confidence 666 455432 222 23356789999999977655 457899999986 55 21 1112111 224
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeC-CCCCCCEEEEEc
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFS-PSPSSSSVIIYS 495 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~~~~~~~~ 495 (601)
.+..+++.+ ++.+.++...++.|.+||.. ++. ...+..+...+.+++|+ |+ .+.+++..
T Consensus 231 ~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~~-----------~~~i~~~~~~~~~~af~g~d--~~~L~vt~ 290 (326)
T 2ghs_A 231 GMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNH-----------IARYEVPGKQTTCPAFIGPD--ASRLLVTS 290 (326)
T ss_dssp EEEEEEECT-TSCEEEEEETTTEEEEECTT-CCE-----------EEEEECSCSBEEEEEEESTT--SCEEEEEE
T ss_pred CCCeeEECC-CCCEEEEEeCCCEEEEECCC-CCE-----------EEEEECCCCCcEEEEEecCC--CCEEEEEe
Confidence 578899999 88877777677899999984 442 12233344569999998 66 45665553
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=2.6e-10 Score=108.52 Aligned_cols=182 Identities=10% Similarity=0.040 Sum_probs=124.6
Q ss_pred eeeccccCCCeEEE-EEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccE
Q 007489 221 LVHNTIFSHTSLLL-VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS 299 (601)
Q Consensus 221 ~~~~~~~~~~~~~l-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~ 299 (601)
.+..+++++...++ +.+...+.+|++.......... .+. ....... .... |+.++| |+++|+++.++.|+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~--~~~--~~~~~~~--~lp~-V~~l~f--d~~~L~v~~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSD--STP--LTFKWEK--EIPD-VIFVCF--HGDQVLVSTRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSS--SCC--CCCSEEE--ECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccc--ccc--ccceEEe--eCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence 45667777765544 4455788889876443110000 000 1111222 2345 999999 99999999999999
Q ss_pred EEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCC
Q 007489 300 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 379 (601)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (601)
+|++.... ... ....+...+.++.+.+.. +++++.||.|.+||+.++.... +...
T Consensus 110 v~dv~sl~---~~~-----~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---------------~~~~ 164 (388)
T 1xip_A 110 SLDLEELS---EFR-----TVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---------------LAQN 164 (388)
T ss_dssp EEESSSTT---CEE-----EEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---------------EEES
T ss_pred EEEchhhh---ccC-----ccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---------------ccCC
Confidence 99998622 211 112233456777666543 8889999999999998777643 2346
Q ss_pred eeEEEEccCCCEEEEEecCCeEEEEEcCCceE--EEEeec--------cCCCceeEEEecCCCCCEEEEE
Q 007489 380 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ--HWFISR--------LEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 380 i~~l~~spd~~~las~~~dg~i~iwd~~~~~~--~~~~~~--------~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
|++++|||+| ++.|..||.+++|+.++... ...++. .|...|.++.|.+ ++.+|++=
T Consensus 165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 9999999999 78899999999999988875 445632 1346899999999 88888764
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=2.3e-09 Score=111.82 Aligned_cols=170 Identities=9% Similarity=0.089 Sum_probs=110.5
Q ss_pred EEEEcCCCCEEEEE-cCC-------------------ccEEEEeecCCCCcceEEEeeecCCc----CccceeEEEEccC
Q 007489 280 CSTISNSGMLFAYS-DHV-------------------KPSLFELKKGKVGQGEWIINKRQLPR----KLQFAHSMIFSYD 335 (601)
Q Consensus 280 ~~~~s~~g~~l~~~-~~~-------------------~v~l~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~s~d 335 (601)
.++++|++..+.++ .++ .|..+|..+ +..+|..+...-.. .......+....+
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T---G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT---GKYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT---CCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC---CCEEEEEecCCCcccccccCCCcEEEecccC
Confidence 56677877777763 222 366666654 77888765321110 0112223334447
Q ss_pred C---CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCC------------------------CeeEEEEccC
Q 007489 336 S---SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP------------------------PITKMFTSSD 388 (601)
Q Consensus 336 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~i~~l~~spd 388 (601)
| ..++.++.+|.++++|..+|+++..+......-......... .-..++++|+
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 7 678999999999999999999887665321000000000000 0125789999
Q ss_pred CCEEEEEec-------------------------------------------CCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 389 GQWLAAVNC-------------------------------------------FGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 389 ~~~las~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
+.++++... .|.|..||+.+++..+.++. +.++..
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~ 481 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNG 481 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcC
Confidence 988877543 27899999999999888764 234455
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 426 AGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 426 l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
..+.. ++.++++++.||.+++||+++++.
T Consensus 482 g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 482 GTLTT-AGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEe-CCCEEEEECCCCcEEEEECCCCce
Confidence 55666 778899999999999999999884
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=4.3e-10 Score=107.61 Aligned_cols=113 Identities=5% Similarity=0.054 Sum_probs=72.1
Q ss_pred ceeEEEEccCCCeEEEEecCC-cEEEEEcC---CCc-----eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe
Q 007489 326 FAHSMIFSYDSSQLIIAGHDR-RIYVVDVS---SSE-----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 396 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg-~i~vwd~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~ 396 (601)
.+..|+|+||++.|+++...+ .+..++.. .+. ....+.. .++......++++++|+++++..
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~g~pdgia~d~~G~l~va~~ 266 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER---------YSEKPICDGISIDKDHNIYVGDL 266 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE---------EEECCSCSCEEECTTCCEEEEEG
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe---------cccCCCCceEEECCCCCEEEEcc
Confidence 357789999999888887765 45444431 111 0000100 00233567799999999999998
Q ss_pred cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEE
Q 007489 397 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 448 (601)
Q Consensus 397 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vw 448 (601)
.++.|.+||.++++............+++++|.+ ++.++++.+..+.+.+|
T Consensus 267 ~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 267 AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred CCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 9999999999556543333222234689999999 88877777655444333
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=1.7e-08 Score=95.66 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCEEEEEcC-----CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEE
Q 007489 277 KIICSTISNSGMLFAYSDH-----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYV 350 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~~~-----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~v 350 (601)
.+.+++++|+|+++++... ....||.+.. +... .+. ........++|+||++.|+.+. .++.|.+
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~---g~~~-~~~-----~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---GKVT-KLF-----ADISIPNSICFSPDGTTGYFVDTKVNRLMR 205 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---TEEE-EEE-----EEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC---CcEE-Eee-----CCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence 4778889999987766321 2355666652 2211 011 1123457899999998776554 4688999
Q ss_pred EEcC--CC-cee--eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 351 VDVS--SS-ELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 351 wd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
|++. ++ +.. ..+.... .....+..++++++|++.++...++.|.+|+.+ ++....+.. +...+++
T Consensus 206 ~d~~~~~Gl~~~~~~~~~~~~--------~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~-~~~~~~~ 275 (326)
T 2ghs_A 206 VPLDARTGLPTGKAEVFIDST--------GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEV-PGKQTTC 275 (326)
T ss_dssp EEBCTTTCCBSSCCEEEEECT--------TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEEC-SCSBEEE
T ss_pred EEcccccCCcccCceEEEECC--------CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEEC-CCCCcEE
Confidence 9985 55 321 1121100 033457889999999988877777889999984 555445543 3457999
Q ss_pred EEec-CCCCCEEEEEeCC
Q 007489 426 AGFP-PQNNNVLIITTSS 442 (601)
Q Consensus 426 l~~~-p~~~~~l~~~~~d 442 (601)
++|+ + +++.|++++..
T Consensus 276 ~af~g~-d~~~L~vt~~~ 292 (326)
T 2ghs_A 276 PAFIGP-DASRLLVTSAR 292 (326)
T ss_dssp EEEEST-TSCEEEEEEBC
T ss_pred EEEecC-CCCEEEEEecC
Confidence 9998 8 77777665543
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.22 E-value=2.1e-10 Score=109.34 Aligned_cols=301 Identities=11% Similarity=0.121 Sum_probs=177.6
Q ss_pred EEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCC
Q 007489 41 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 120 (601)
Q Consensus 41 ~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 120 (601)
.++.+..+|.|..++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..+|. ++..
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-------- 89 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-------- 89 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG--------
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE--------
Confidence 344555677888888899999999 88887766665555667777776665 4545544 777775 3331
Q ss_pred ccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEecc
Q 007489 121 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 200 (601)
Q Consensus 121 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~ 200 (601)
...+...........+. + ..++.++.++.|..+|..
T Consensus 90 ---------~~~~~~~~~~~~~~~~~----------~-------------------------~~l~v~t~~~~l~~~d~~ 125 (330)
T 3hxj_A 90 ---------KWRFDTKKAIVSDFTIF----------E-------------------------DILYVTSMDGHLYAINTD 125 (330)
T ss_dssp ---------GGGSCC-----CCEEEE----------T-------------------------TEEEEECTTSEEEEECTT
T ss_pred ---------EEEEECCCCcccCceEE----------C-------------------------CEEEEEecCCEEEEEcCC
Confidence 11111111111112211 1 267777778888888765
Q ss_pred ccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 007489 201 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 280 (601)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 280 (601)
. .. +|.... ....+.+
T Consensus 126 g-~~--------------------------------------~~~~~~-------------------------~~~~~~~ 141 (330)
T 3hxj_A 126 G-TE--------------------------------------KWRFKT-------------------------KKAIYAT 141 (330)
T ss_dssp S-CE--------------------------------------EEEEEC-------------------------SSCCCSC
T ss_pred C-CE--------------------------------------EEEEcC-------------------------CCceeee
Confidence 1 10 111110 0122334
Q ss_pred EEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceee
Q 007489 281 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH 360 (601)
Q Consensus 281 ~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~ 360 (601)
+...+++.+++.+.++.+..|+.. +..+|.... ....+.++.+.+++..+ +++ +.|..+| .+++.+.
T Consensus 142 ~~~~~~g~l~vgt~~~~l~~~d~~----g~~~~~~~~-----~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 142 PIVSEDGTIYVGSNDNYLYAINPD----GTEKWRFKT-----NDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp CEECTTSCEEEECTTSEEEEECTT----SCEEEEEEC-----SSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEE
T ss_pred eEEcCCCEEEEEcCCCEEEEECCC----CCEeEEEec-----CCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEE
Confidence 455667776666666777777653 445554431 12345667777777644 455 7799999 7777766
Q ss_pred eeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe
Q 007489 361 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~ 440 (601)
.+.. ....+.++...++|.+ ..++.++.|..++. +++..+..... ...+.++.+.+ ++ .|.+++
T Consensus 209 ~~~~-----------~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~-~g-~l~v~t 272 (330)
T 3hxj_A 209 NFYA-----------GYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGN-TD-TIYFGS 272 (330)
T ss_dssp EECC-----------SSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECT-TS-CEEEEC
T ss_pred EEcc-----------CCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcC-CC-eEEEec
Confidence 6654 4456888889888764 45666778888885 44554555432 22344555655 44 677888
Q ss_pred CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 441 SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 441 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
.+|.|..+|. +++. .|. +......+.++..+++ +.+++.+.+++..+.-..
T Consensus 273 ~~ggl~~~d~-~g~~-~~~----------~~~~~~~~~~~~~d~~---g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 273 YDGHLYAINP-DGTE-KWN----------FETGSWIIATPVIDEN---GTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TTCEEEEECT-TSCE-EEE----------EECSSCCCSCCEECTT---CCEEEECTTSCEEEEEC-
T ss_pred CCCCEEEECC-CCcE-EEE----------EEcCCccccceEEcCC---CEEEEEcCCCeEEEEecc
Confidence 8889999996 4442 121 1112234455555544 678888888877766443
No 234
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=2.7e-07 Score=98.88 Aligned_cols=416 Identities=9% Similarity=0.074 Sum_probs=228.1
Q ss_pred eeecCCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc-------c
Q 007489 4 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-------F 76 (601)
Q Consensus 4 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~-------~ 76 (601)
.|..++-|..||..+++.. .+.........-....|.++...++|.|..|+.. -+.+||..+++...... .
T Consensus 178 igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l 255 (781)
T 3v9f_A 178 IGHVEGGLSILSLNDKSVK-HFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGA 255 (781)
T ss_dssp EEETTTEEEEEETTTTEEE-EECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------
T ss_pred EEecCCCeEEEcCCCCceE-eeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccc
Confidence 3444545777887665432 2210000000011345899988888866556555 58899987665432111 1
Q ss_pred cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEe----cCccccccceeEEEeeccccCC
Q 007489 77 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV----GSVRAHTHDVRALTVAVPISRE 152 (601)
Q Consensus 77 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~~~~~~~~~ 152 (601)
....|.++...++|. |..|+..+-|.+++..+....... ...|... .........|.++...
T Consensus 256 ~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~-------~~~f~~~~~~~~~~~l~~~~v~~i~~D------ 321 (781)
T 3v9f_A 256 LSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPE-------QIRFEFIREGDNNYSLSNASARYIFQD------ 321 (781)
T ss_dssp CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC----------------CEEECBCSSTTSBSSSCEEEEEEC------
T ss_pred cCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeee-------ccccccccCCCCCCCCCCCeEEEEEEe------
Confidence 245699999887776 445555466888888765421000 0000000 0011234567777754
Q ss_pred CCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC--CcCCCccCCCCCccceeeeeccccCCC
Q 007489 153 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT--KFSPHEICPAPQRVPIHLVHNTIFSHT 230 (601)
Q Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (601)
++| .|..|..++-|..++..... .+........+.......+.++...++
T Consensus 322 ---~~g-------------------------~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 373 (781)
T 3v9f_A 322 ---SFN-------------------------NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ 373 (781)
T ss_dssp ---SSC-------------------------CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT
T ss_pred ---CCC-------------------------CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC
Confidence 444 56677777778888776422 111000000011112235667777776
Q ss_pred eEEEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCC
Q 007489 231 SLLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG 309 (601)
Q Consensus 231 ~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~ 309 (601)
+.+.+.. .+.+..++........ ...........|.++...++|.+.+...++.+..++... +
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~-------------~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~---~ 437 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIY-------------NKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL---K 437 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEEC-------------C-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS---C
T ss_pred CCEEEEeCCCcEEEEECCCCeEEE-------------ccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC---C
Confidence 6655544 5667777654321110 000001123668899988888877766556677776543 1
Q ss_pred cceEEEeeecC-CcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC
Q 007489 310 QGEWIINKRQL-PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 388 (601)
Q Consensus 310 ~~~~~~~~~~~-~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 388 (601)
.. ..... ......|.++...+++. |.+|+. +-|.+||..+++........ . .......|.++...++
T Consensus 438 -~~---~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~-~-----~~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 438 -KF---QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTS-N-----SQLLENFVRSIAQDSE 505 (781)
T ss_dssp -EE---EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTT-T-----SSCSCSCEEEEEECTT
T ss_pred -cE---EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCc-c-----cccccceeEEEEEcCC
Confidence 11 11111 12245788898888875 445565 55999998766543322210 0 0002467999999999
Q ss_pred CCEEEEEecCCeEEEEEcCCceEEEEeec---cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCC
Q 007489 389 GQWLAAVNCFGDVYIFNLEIQRQHWFISR---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFV 465 (601)
Q Consensus 389 ~~~las~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 465 (601)
|++.+.....| |..||.++++... +.. .....|.++...+ ++.+. .++.+|-|..||..+++...+....
T Consensus 506 g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~-~g~lW-i~T~~Glv~~~d~~~~~~~~~~~~~--- 578 (781)
T 3v9f_A 506 GRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSS-KGQMW-LATGEGLVCFPSARNFDYQVFQRKE--- 578 (781)
T ss_dssp CCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEECT-TSCEE-EEETTEEEEESCTTTCCCEEECGGG---
T ss_pred CCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECC-CCCEE-EEECCCceEEECCCCCcEEEccccC---
Confidence 88665544355 8889987765442 222 2235688998888 77654 4455665588998877653322111
Q ss_pred cCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeCCC
Q 007489 466 LPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 506 (601)
Q Consensus 466 ~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (601)
.+ ....|.++..+++ +.+|+.+.++++.++...
T Consensus 579 ---gl--~~~~i~~i~~d~~---g~lW~~t~~Gl~~~~~~~ 611 (781)
T 3v9f_A 579 ---GL--PNTHIRAISEDKN---GNIWASTNTGISCYITSK 611 (781)
T ss_dssp ---TC--SCCCCCEEEECSS---SCEEEECSSCEEEEETTT
T ss_pred ---CC--CCceEEEEEECCC---CCEEEEcCCceEEEECCC
Confidence 01 1235677777655 689999999999998753
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=5.6e-10 Score=106.81 Aligned_cols=231 Identities=13% Similarity=0.018 Sum_probs=138.2
Q ss_pred CCceEEEEEEEeeCCeEEEEcC------CCcEEEeeCCccchhhhccc------cccceEEEEEeCCCCEE-EEEe---e
Q 007489 35 GPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHSF------HKGDVNALAAAPSHNRV-FSTG---S 98 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g~l~s~~~------dg~i~vwd~~~~~~~~~~~~------h~~~V~~l~~s~~~~~l-~s~~---~ 98 (601)
+|...+..|+++++|.|...+. ++.|.+||+.+++.+..+.. +...+..+++++++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 5677899999999995544432 57899999998887655542 23456899999865555 4544 6
Q ss_pred CCeEEEEEeccCcCCCCCCCCCccccceeEEecCcccccccee-EEEeeccccCCCCCCcccccccCCCCcccccccccc
Q 007489 99 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 177 (601)
Q Consensus 99 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 177 (601)
++.|.+||+.+++. ...+..|..... ...+. ++|+
T Consensus 144 ~~~i~v~d~~~g~~-----------------~r~~~~~~~~~~~~~~~~---------~~g~------------------ 179 (343)
T 2qe8_A 144 KAALIRVDLQTGLA-----------------ARVLQGYPGIAPEDIDLV---------IDGV------------------ 179 (343)
T ss_dssp GCEEEEEETTTCCE-----------------EEECTTCTTTSCCSCCCE---------ETTE------------------
T ss_pred CCeEEEEECCCCCE-----------------EEEecCCCccccccccee---------ECCE------------------
Confidence 78999999987652 122222211100 01111 2232
Q ss_pred ccCCCCEEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCC
Q 007489 178 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS 257 (601)
Q Consensus 178 ~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~ 257 (601)
.+.+.+.++.+..|.
T Consensus 180 ------~~~~~~~~g~~~~~~----------------------------------------------------------- 194 (343)
T 2qe8_A 180 ------PVQIGQPDGTVIRPH----------------------------------------------------------- 194 (343)
T ss_dssp ------ECBEECTTSCEECCC-----------------------------------------------------------
T ss_pred ------EEEeccCCCceecee-----------------------------------------------------------
Confidence 333333343332211
Q ss_pred CCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecC--CCCc----ceEEEeeecCCcCccceeEEE
Q 007489 258 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG--KVGQ----GEWIINKRQLPRKLQFAHSMI 331 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~--~~~~----~~~~~~~~~~~~~~~~v~~i~ 331 (601)
..+..++++|+|+.|.++....-++|.+... ..+. .++ ......++......++
T Consensus 195 ------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 195 ------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG--SKIERYSEKPICDGIS 254 (343)
T ss_dssp ------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH--TTCEEEEECCSCSCEE
T ss_pred ------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh--cceEecccCCCCceEE
Confidence 2356788999998887754333466766531 0000 000 0000011222456789
Q ss_pred EccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEE
Q 007489 332 FSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 332 ~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iw 404 (601)
++++|.++++...++.|.+||..+++........ ....+.+++|+++++++++.+..+.+.+|
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~----------~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE----------KLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG----------GGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC----------ceecCCeeEECCCCcEEEEeCcccccccc
Confidence 9999998888888999999998556643332210 24568999999999988887765555444
No 236
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.2e-06 Score=93.75 Aligned_cols=410 Identities=10% Similarity=0.049 Sum_probs=225.4
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcc-------ccccc
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-------FHKGD 80 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~-------~h~~~ 80 (601)
++-|..||..+++. ..+... ....-....|.++...++|.|..|..++-|..+|..+++...-.. -....
T Consensus 136 ~~gl~~~~~~~~~~-~~~~~~--~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (781)
T 3v9f_A 136 YRGIEYLDIATGKF-THYNKS--TVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGND 212 (781)
T ss_dssp SSCEEEEETTTTEE-EEESTT--TCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSS
T ss_pred CCCeeEEECCCCeE-EeeccC--cccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCc
Confidence 44567777665443 223210 000012345889988889976667766568889987664322110 11356
Q ss_pred eEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCCCCccccceeEEec--CccccccceeEEEeeccccCCCCCCcc
Q 007489 81 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG--SVRAHTHDVRALTVAVPISREDPLPED 158 (601)
Q Consensus 81 V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~~~~d~ 158 (601)
|.++...++|.+.+.. .+ -+.+|+..++.... +.... ........|.++... ++|
T Consensus 213 i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~------------~~~~~~~~~~l~~~~i~~i~~d---------~~g 269 (781)
T 3v9f_A 213 VRCIYKDTNGNIWIGT-SK-GLALFNANTETFTN------------FHNNPGNIHGALSSYIFSIKQL---------KDN 269 (781)
T ss_dssp EEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------------------CCCCEEEEEEC---------TTS
T ss_pred eeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEE------------EEcCCCccccccCceEEEEEEC---------CCC
Confidence 8999988888766543 34 68889877654200 00000 001123457777764 444
Q ss_pred cccccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccCCcCCCc-------cCCCCCccceeeeeccccCCCe
Q 007489 159 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE-------ICPAPQRVPIHLVHNTIFSHTS 231 (601)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 231 (601)
.|..|...+-|..++..+........ ....+.......+.++...+++
T Consensus 270 -------------------------~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g 324 (781)
T 3v9f_A 270 -------------------------KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN 324 (781)
T ss_dssp -------------------------EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC
T ss_pred -------------------------CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC
Confidence 56666665567778876532111000 0001111222456677777776
Q ss_pred EEEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCc
Q 007489 232 LLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ 310 (601)
Q Consensus 232 ~~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~ 310 (601)
.+.+.. .+.+..++.....-.......... ....-....|.++...++|.+.+...++-+..|+... +
T Consensus 325 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~---~- 393 (781)
T 3v9f_A 325 NIWIGTWGGGINFISNAPPTFHTWSYSPTQM-------NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK---R- 393 (781)
T ss_dssp CEEEEEBSSCEEEECSSCCSCEEEC----CC-------CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE---E-
T ss_pred CEEEEecCCeEEEeCCCCCcceeeccCcccc-------ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC---C-
Confidence 654444 567777765432211000000000 0000013568899998888877766566677777643 1
Q ss_pred ceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCC
Q 007489 311 GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 390 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~ 390 (601)
.+..-..........|.++...+++.+ .+|+.++-+..++..+++.. .+... ......|.++...++|+
T Consensus 394 -~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~--------~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 394 -VAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQ-IIELE--------KNELLDVRVFYEDKNKK 462 (781)
T ss_dssp -EEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEE-ECCST--------TTCCCCEEEEEECTTSE
T ss_pred -eEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEE-EeccC--------CCCCCeEEEEEECCCCC
Confidence 110000000122357888988877765 44777677999998766543 22210 00356799999988887
Q ss_pred EEEEEecCCeEEEEEcCCceEEEEeecc----CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCc
Q 007489 391 WLAAVNCFGDVYIFNLEIQRQHWFISRL----EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVL 466 (601)
Q Consensus 391 ~las~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 466 (601)
+.+. +. +-|.+||..+++........ ....|.++...+ ++.+ .+++.++-|..||..+++...+..
T Consensus 463 lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~------ 532 (781)
T 3v9f_A 463 IWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRF-WIGTFGGGVGIYTPDMQLVRKFNQ------ 532 (781)
T ss_dssp EEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCE-EEEESSSCEEEECTTCCEEEEECT------
T ss_pred EEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCE-EEEEcCCCEEEEeCCCCeEEEccC------
Confidence 5554 44 45999998876543222111 135789998888 7764 455554448889988766433211
Q ss_pred CcccccCCCcEEEEEeCCCCCCCEEEEEcCceE-EEEeCC
Q 007489 467 PRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAM-CVIDFG 505 (601)
Q Consensus 467 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~-~~~~~~ 505 (601)
...+ ....|.++..+++ +.+|+.+..++ +.+|..
T Consensus 533 ~~~l--~~~~i~~i~~d~~---g~lWi~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 533 YEGF--CSNTINQIYRSSK---GQMWLATGEGLVCFPSAR 567 (781)
T ss_dssp TTTC--SCSCEEEEEECTT---SCEEEEETTEEEEESCTT
T ss_pred CCCC--CCCeeEEEEECCC---CCEEEEECCCceEEECCC
Confidence 0011 1356888888765 67888887888 887764
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=4.5e-09 Score=103.80 Aligned_cols=310 Identities=9% Similarity=0.015 Sum_probs=183.7
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCC---------------------------CC---C-ceEEEEEEEe----
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG---------------------------SG---P-ELCIWSLLSL---- 46 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------------------~~---h-~~~V~~v~~s---- 46 (601)
+.||+..|.|+|+-+.+++.++++.+=..... +| . .+....+..|
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 57899999999999999999988864211000 01 0 1112224444
Q ss_pred -eCC-e-EEEEcCCCcEEEeeCCccchhhhccc-cccceEEEEE-e-CCCCEEEEEe------------------eCCeE
Q 007489 47 -RCG-T-LVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAA-A-PSHNRVFSTG------------------SDGQV 102 (601)
Q Consensus 47 -~~g-~-l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~-s-~~~~~l~s~~------------------~dg~i 102 (601)
+|| + +++...+++|.+.|+.+.++...+.- ....+..+++ + |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 477 4 45555677899999999987774431 2345788888 5 9999999884 34678
Q ss_pred EEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCC
Q 007489 103 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 182 (601)
Q Consensus 103 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (601)
.+.|..+.+. ..++..-. ....++++ |+|+
T Consensus 178 tvID~~t~~v-----------------~~qI~Vgg-~pd~~~~s---------pdGk----------------------- 207 (595)
T 1fwx_A 178 TAVDADKWEV-----------------AWQVLVSG-NLDNCDAD---------YEGK----------------------- 207 (595)
T ss_dssp EEEETTTTEE-----------------EEEEEESS-CCCCEEEC---------SSSS-----------------------
T ss_pred EEEECCCCeE-----------------EEEEEeCC-CccceEEC---------CCCC-----------------------
Confidence 8888877552 22222111 33455555 7776
Q ss_pred CEEEEecCCC---------------eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeecc
Q 007489 183 PMLISAGDDT---------------KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 247 (601)
Q Consensus 183 ~~l~s~~~d~---------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~ 247 (601)
.+++.+.+. .+.+.+..... .+.++|..... +.+.+.+..
T Consensus 208 -~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----------------------~~v~~Gk~~~i--~~V~VID~~ 262 (595)
T 1fwx_A 208 -WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----------------------KAIAAGDYQEL--NGVKVVDGR 262 (595)
T ss_dssp -EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH----------------------HHHHHTCSEEE--TTEEEEECS
T ss_pred -EEEEEecCcccCcchhhccccccceEEEeecccee----------------------EeccCCCeeEE--CcEEEEeCc
Confidence 666666543 34454443211 11222322111 457777776
Q ss_pred ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCC--------CcceEEEee
Q 007489 248 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKV--------GQGEWIINK 317 (601)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~--------~~~~~~~~~ 317 (601)
..... ..+..+..+ ....++.++|||++++++ .+.+|.++|+...+. ...+ .
T Consensus 263 ~~~~~------------~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v---~- 324 (595)
T 1fwx_A 263 KEASS------------LFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV---V- 324 (595)
T ss_dssp GGGCC------------SSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE---E-
T ss_pred ccCCc------------eeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce---E-
Confidence 52111 013444443 456789999999998884 678899999985110 0011 0
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC----------CceeeeeccCcccccccCCCCCCCeeEEEEcc
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS----------SELLHTFTPCREEHDREIQPSEPPITKMFTSS 387 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 387 (601)
... .-......++|+|+|...++.-.|++|.+||+.. .+.+.++..+-. .+|...-..+.++|
T Consensus 325 ~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq------pGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 325 AEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ------PGHLKTVMGETLDA 397 (595)
T ss_dssp ECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC------EEEEEETTTTSTTC
T ss_pred EEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc------cccceeccceEeCC
Confidence 111 1123468899999994344555689999999976 445555554100 00111112335689
Q ss_pred CCCEEEEEec---CCe----------EEEEEcCCceE
Q 007489 388 DGQWLAAVNC---FGD----------VYIFNLEIQRQ 411 (601)
Q Consensus 388 d~~~las~~~---dg~----------i~iwd~~~~~~ 411 (601)
||++|+++.. |+. -.++|+.+++.
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 9999998763 432 28899976653
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=2.9e-08 Score=94.56 Aligned_cols=102 Identities=7% Similarity=0.007 Sum_probs=67.9
Q ss_pred cEEEEECCC-----CceEEEEEeccCCCCCCCceE-----EEEEEEe--eCC--eEEEEcCCCcEEEeeCCcc----chh
Q 007489 10 YIRSWDAKL-----GYEIYRITVGLGGLGSGPELC-----IWSLLSL--RCG--TLVSADSTGSVQFWDSRHG----TLL 71 (601)
Q Consensus 10 ~i~iwd~~~-----~~~~~~~~~~~~~~~~~h~~~-----V~~v~~s--~~g--~l~s~~~dg~i~vwd~~~~----~~~ 71 (601)
.|.+.|+.. ++.++++.++..+-.-.|.+. ..+..++ +++ .++++-.+++|.|.|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 588889887 899999987643322234442 0122346 777 4567778899999999755 444
Q ss_pred hhcc-------ccccceEEEEEeCCCCEEEEEeeC------CeEEEEEeccCcC
Q 007489 72 QAHS-------FHKGDVNALAAAPSHNRVFSTGSD------GQVILYKASCESI 112 (601)
Q Consensus 72 ~~~~-------~h~~~V~~l~~s~~~~~l~s~~~d------g~i~vw~~~~~~~ 112 (601)
.++. .-......+..+|+| .++++..+ +.|.++|..+.+.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 4442 112245677888999 77766655 7899999888764
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=2.4e-08 Score=95.07 Aligned_cols=211 Identities=12% Similarity=0.089 Sum_probs=135.3
Q ss_pred CCCCEEEE-E-cCCccEEEEeecCCCCcceEEEee-ecCC--cCccceeEEEEccCCCeEEEEecC------CcEEEEEc
Q 007489 285 NSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINK-RQLP--RKLQFAHSMIFSYDSSQLIIAGHD------RRIYVVDV 353 (601)
Q Consensus 285 ~~g~~l~~-~-~~~~v~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~v~~i~~s~d~~~l~~~~~d------g~i~vwd~ 353 (601)
+++++|.+ + .++.|+++|+.+.....++.+... .++. .....-..+..+|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 78888888 3 678899999875222222211110 0111 011234677889999 66665555 78999999
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-------------------cCCeEEEEEcCCceEEEE
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-------------------CFGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-------------------~dg~i~iwd~~~~~~~~~ 414 (601)
.+++.+.++..... ...--..+.|+|+++.+++.. ...+|.+||+.+++....
T Consensus 172 ~T~~v~~~~~~~~~--------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFEPLGKWEIDRG--------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCCEEEECCSBCT--------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEccCCC--------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 99999988874211 112234688999999998885 368899999999887777
Q ss_pred eecc-CCCceeEEEe--cCCCCCEEEEEeC------CCeEEEEEcCCCCcccchhc--ccC----CcC---cccccCCCc
Q 007489 415 ISRL-EGASVTAAGF--PPQNNNVLIITTS------SNQVYVFDVEAKQLGEWSMQ--HTF----VLP---RRYQEFPGE 476 (601)
Q Consensus 415 ~~~~-~~~~v~~l~~--~p~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~--~~~----~~~---~~~~~~~~~ 476 (601)
+... .+.....+.| +| +++++.+++. +++|.+|..+.++....+.. ... .++ ..+.+-...
T Consensus 244 I~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 7653 2234556655 99 9998888874 57898888765432221111 000 011 112111245
Q ss_pred EEEEEeCCCCCCCEEEEE--cCceEEEEeCCCC
Q 007489 477 VIGLSFSPSPSSSSVIIY--SARAMCVIDFGRP 507 (601)
Q Consensus 477 v~~i~~~p~~~~~~~~~~--~~~~~~~~~~~~~ 507 (601)
+.+|.++|| +..+++. +.+.+.+||++.+
T Consensus 323 pa~I~lS~D--GrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 323 VTDIDISLD--DKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CCCEEECTT--SCEEEEEETTTTEEEEEECSST
T ss_pred eeEEEECCC--CCEEEEEeCCCCEEEEEEecCC
Confidence 789999999 6666655 7889999998753
No 240
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.99 E-value=3e-08 Score=104.45 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=113.1
Q ss_pred EEEEEcCCCCEEEE-EcCC-------------ccEEEEeecCCCCcceEEEeeecCCc-CccceeEEEEccCCCeEEEEe
Q 007489 279 ICSTISNSGMLFAY-SDHV-------------KPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 279 ~~~~~s~~g~~l~~-~~~~-------------~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~s~d~~~l~~~~ 343 (601)
..++|+ ||+.|+. ..+. .|++|++.+......+ + ..... +...+..+.|||||++|+...
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~--v--~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRL--V--FGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEE--E--ESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceE--E--EecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 345688 8887777 3332 3677776541111111 1 22233 334567899999999986654
Q ss_pred c----CCcEEEEEcCCCc-eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-c---CCeEEEEEcCCceE---
Q 007489 344 H----DRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-C---FGDVYIFNLEIQRQ--- 411 (601)
Q Consensus 344 ~----dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~---dg~i~iwd~~~~~~--- 411 (601)
. ...|+++|+.++. ....+.. +....... ++++|..|+..+ . .+.|.++++.++..
T Consensus 253 ~~~~~~~~i~~~d~~~~~~~~~~l~~-----------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~ 320 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENAPLLTVQG-----------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHW 320 (693)
T ss_dssp ESSSSCCEEEEEETTSTTCCCEEEEC-----------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred ccCCCCcEEEEEECCCCCCceEEEeC-----------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 3 2489999997664 3445544 34444444 677777665444 3 36799999987654
Q ss_pred EEEeeccCCCceeEEEecCCCCCEEEEEeCCC---eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCC
Q 007489 412 HWFISRLEGASVTAAGFPPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSS 488 (601)
Q Consensus 412 ~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 488 (601)
...++ +...+. .|++ +++.|+....++ .|++|+++++..... .+ ...+.+..+.++|+ +
T Consensus 321 ~~l~~--~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l----------~~-p~~~~~~~~~~~~d--~ 382 (693)
T 3iuj_A 321 RDLIP--ERQQVL--TVHS-GSGYLFAEYMVDATARVEQFDYEGKRVREV----------AL-PGLGSVSGFNGKHD--D 382 (693)
T ss_dssp EEEEC--CCSSCE--EEEE-ETTEEEEEEEETTEEEEEEECTTSCEEEEE----------CC-SSSSEEEECCCCTT--C
T ss_pred EEEec--CCCCEE--EEEE-ECCEEEEEEEECCeeEEEEEECCCCeeEEe----------ec-CCCceEEeeecCCC--C
Confidence 32333 222343 8888 888887776543 789999886543110 01 12345777778777 3
Q ss_pred CEEEE-EcC----ceEEEEeCC
Q 007489 489 SSVII-YSA----RAMCVIDFG 505 (601)
Q Consensus 489 ~~~~~-~~~----~~~~~~~~~ 505 (601)
..+++ ++. ..++.+|+.
T Consensus 383 ~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 383 PALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp SCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEecCCCCCCEEEEEECC
Confidence 44433 332 567777764
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.98 E-value=2.2e-10 Score=110.46 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCc
Q 007489 48 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 111 (601)
Q Consensus 48 ~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~ 111 (601)
++++++++.||.|..||..+|+.+.++.. +.+.+..+..++..+++++.|+.|+.||..+++
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 45899999999999999999999887775 566666666788888888899999999998876
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=7.2e-08 Score=100.44 Aligned_cols=170 Identities=11% Similarity=0.092 Sum_probs=104.1
Q ss_pred EEEEcCCCCEEEEE-cCC-------------------ccEEEEeecCCCCcceEEEeeecCCc----CccceeEEEEccC
Q 007489 280 CSTISNSGMLFAYS-DHV-------------------KPSLFELKKGKVGQGEWIINKRQLPR----KLQFAHSMIFSYD 335 (601)
Q Consensus 280 ~~~~s~~g~~l~~~-~~~-------------------~v~l~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~s~d 335 (601)
.++++|+...+.++ .++ .|..+|..+ +..+|......... ...+.....+..+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t---G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~ 310 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT---GKLAWHYQVTPGDSWDFTATQQITLAELNID 310 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT---CCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC---CceeeEeecCCCccccccCCCCcEEEEeccC
Confidence 45677777666663 332 256666654 77888765421110 0122222333346
Q ss_pred CC---eEEEEecCCcEEEEEcCCCceeeeeccCccc-----c--------cccCC-CC-----------CCCeeEEEEcc
Q 007489 336 SS---QLIIAGHDRRIYVVDVSSSELLHTFTPCREE-----H--------DREIQ-PS-----------EPPITKMFTSS 387 (601)
Q Consensus 336 ~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~--------~~~~~-~~-----------~~~i~~l~~sp 387 (601)
|+ .++.++.+|.++++|..+|+++..+...... . ..... .. ...-..++++|
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence 75 6888999999999999999987544321100 0 00000 00 00012368888
Q ss_pred CCCEEEEEe------------------------------------cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCC
Q 007489 388 DGQWLAAVN------------------------------------CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 431 (601)
Q Consensus 388 d~~~las~~------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~ 431 (601)
+..+++... .+|.|..||+.+++..+..+... +.....+..
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t- 467 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLST- 467 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEE-
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEe-
Confidence 877665421 24889999999999988876432 333334444
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 432 NNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 432 ~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.+.++++++.|+.|+.||.++++.
T Consensus 468 ~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 468 AGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCEEEEECCcccchhhhhhcChh
Confidence 677899999999999999999874
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=2.5e-08 Score=98.56 Aligned_cols=184 Identities=11% Similarity=0.018 Sum_probs=118.7
Q ss_pred CeEEEEEeC---CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE-c-CCCCEEEEEcC---------
Q 007489 230 TSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI-S-NSGMLFAYSDH--------- 295 (601)
Q Consensus 230 ~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s-~~g~~l~~~~~--------- 295 (601)
||+++...+ ..+.+.++...+ ....+..+....+..+++ + |+++++.++..
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~---------------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMK---------------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE---------------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCEEEEEcCCCCEEEEEECCCce---------------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 777665543 456666666443 333334444456888887 5 99999888631
Q ss_pred ----------CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCC-------------------
Q 007489 296 ----------VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR------------------- 346 (601)
Q Consensus 296 ----------~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg------------------- 346 (601)
+.+.+.|..+ ....|++.... .-..++++|||+++++.+.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t---~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V 235 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADK---WEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV 235 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTT---TEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred cccccccccCceEEEEECCC---CeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEE
Confidence 2455555553 45555554321 124567999999998888653
Q ss_pred -------------------cEEEEEcCC--Cce-eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEE
Q 007489 347 -------------------RIYVVDVSS--SEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYI 403 (601)
Q Consensus 347 -------------------~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~i 403 (601)
.|.|.|..+ ++. +..+.. .....++.+||||+++++++ .+.+|.+
T Consensus 236 ~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv------------g~~PhGv~~sPDGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 236 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI------------ANNPHGCNMAPDKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE------------ESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred eeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec------------CCCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence 244555544 222 223321 23456799999999887665 6789999
Q ss_pred EEcCCce------------EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 404 FNLEIQR------------QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 404 wd~~~~~------------~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
+|+.+.+ ....++ -+..+..++|+| +|...++...|++|.+||++.
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred EECcccccccccccCcccceEEEcC--CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 9999763 232332 346799999999 984444556799999999987
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=5.5e-07 Score=93.81 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=67.5
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCC-CC-ceEE-EEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccc
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS-GP-ELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK 78 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~h-~~~V-~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 78 (601)
|+.++.++.|.-+|..+|+.+.++......... .. ...+ ..+++ .+++++.++.|+.|..+|..+|+.+.++....
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~ 147 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTD 147 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEECSC
T ss_pred EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeeccCC
Confidence 567788899999999999999988642111000 00 0001 11222 25588889999999999999999886655321
Q ss_pred c-ceEEEEEeC--CCCEEEEEee------CCeEEEEEeccCcC
Q 007489 79 G-DVNALAAAP--SHNRVFSTGS------DGQVILYKASCESI 112 (601)
Q Consensus 79 ~-~V~~l~~s~--~~~~l~s~~~------dg~i~vw~~~~~~~ 112 (601)
. ....+..+| .+..++.+.. ++.|..+|..+++.
T Consensus 148 ~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 148 PAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp TTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 0 000111111 2345555432 68999999999873
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.91 E-value=4.4e-07 Score=92.35 Aligned_cols=108 Identities=10% Similarity=0.084 Sum_probs=67.9
Q ss_pred EEeeec-CCcEEEEEC-CCCceEEEEEeccCCCCC---CCceEEEEEEEeeCC-e----EEEEcCCCcEEEeeCCccchh
Q 007489 2 LYSGSS-DGYIRSWDA-KLGYEIYRITVGLGGLGS---GPELCIWSLLSLRCG-T----LVSADSTGSVQFWDSRHGTLL 71 (601)
Q Consensus 2 l~tg~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~---~h~~~V~~v~~s~~g-~----l~s~~~dg~i~vwd~~~~~~~ 71 (601)
|+.++. ++.|.-+|. .+|+.+.+.......... ........++++|.+ + |+.++.|+.|.-+|..+|+.+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~ 144 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE
Confidence 556666 889999999 899999988743211000 000011234555433 6 999999999999999999987
Q ss_pred hhccccc----cceEE-EEEeCCCCEEEEEe------eCCeEEEEEeccCc
Q 007489 72 QAHSFHK----GDVNA-LAAAPSHNRVFSTG------SDGQVILYKASCES 111 (601)
Q Consensus 72 ~~~~~h~----~~V~~-l~~s~~~~~l~s~~------~dg~i~vw~~~~~~ 111 (601)
....... ..+.+ ..+. ++ .++.++ .++.|..+|..+++
T Consensus 145 W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 145 WKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp EEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred EeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCc
Confidence 5544211 01211 1111 34 455554 37999999999987
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=2.7e-07 Score=81.38 Aligned_cols=199 Identities=8% Similarity=0.030 Sum_probs=131.5
Q ss_pred CCeEEEEEcCCCCEEEE-EcCC--ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEE
Q 007489 276 RKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVV 351 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vw 351 (601)
.-...+.|+ ++.++.+ +.++ .|+.+|+.+ +..+ ....+.. ......+.+++..|.... .++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T---gkv~---~~~~l~~---~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES---GKTL---QQIELGK---RYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT---CCEE---EEEECCT---TCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCC---CcEE---EEEecCC---ccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 335788888 6665555 5655 788888876 4433 1222332 222322334455665555 47899999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc-CC---CceeEEE
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-EG---ASVTAAG 427 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~l~ 427 (601)
|..+.+.+.++... . ....+++|++.|+.++.++.|.++|..+.+....++.. .+ ..++.+.
T Consensus 113 D~~t~~~~~ti~~~------------~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 113 NIRNLRQVRSFNYD------------G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp ETTTCCEEEEEECS------------S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred ECccCcEEEEEECC------------C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 99999999999852 1 12233458888888777889999999999887776653 22 2345688
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcc---cccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEeC
Q 007489 428 FPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRR---YQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 504 (601)
Q Consensus 428 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~~ 504 (601)
|. ++...+..-.++.|.+.|.++++...+..... +... ...-.....+|+|+|+ .+++++-+..|-.+|.+
T Consensus 179 ~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~--L~~~~~~~~~~~~vlNGIA~dp~--~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 179 WV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG--ILAEAGPLPSPIDVLNGIAWDKE--HHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTT--GGGGSCSCCSSCCCEEEEEEETT--TTEEEEEETTCSEEEEE
T ss_pred EE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCc--CccccccccCcCCceEEEEEcCC--CCEEEEECCCCCceEEE
Confidence 86 56655555578899999999998766533221 1100 0111246799999998 78999999988666654
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=1.4e-06 Score=88.83 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=66.6
Q ss_pred EEeeec-CCcEEEEEC-CCCceEEEEEeccCCCCCC--Cc-eEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccc
Q 007489 2 LYSGSS-DGYIRSWDA-KLGYEIYRITVGLGGLGSG--PE-LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 76 (601)
Q Consensus 2 l~tg~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~--h~-~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~ 76 (601)
|+.++. ++.|.-+|. .+|+.+.+........... .. ..-..+++ .+++++.++.|+.|..+|..+|+.+.+...
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 143 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence 456666 889999999 9999998886432100000 00 00011222 256888888999999999999998765442
Q ss_pred cc--c--ceEE-EEEeCCCCEEEEEee------CCeEEEEEeccCc
Q 007489 77 HK--G--DVNA-LAAAPSHNRVFSTGS------DGQVILYKASCES 111 (601)
Q Consensus 77 h~--~--~V~~-l~~s~~~~~l~s~~~------dg~i~vw~~~~~~ 111 (601)
.. . .+.+ ... .+..++.++. ++.|..+|..+++
T Consensus 144 ~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 144 CDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp CCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 11 1 1211 111 2345666654 7899999999887
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.87 E-value=6.4e-07 Score=91.27 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=92.5
Q ss_pred cEEEEeecCCCCcceEEEeeecCC-----cCccceeEEEEccCCC---eEEEEecCCcEEEEEcCCCceeeeeccCcccc
Q 007489 298 PSLFELKKGKVGQGEWIINKRQLP-----RKLQFAHSMIFSYDSS---QLIIAGHDRRIYVVDVSSSELLHTFTPCREEH 369 (601)
Q Consensus 298 v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~s~d~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 369 (601)
+..+|..+ +..+|..+..... ....++ -+....+|+ .++.++.+|.++++|..+|+.+..+.......
T Consensus 274 v~Ald~~t---G~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 274 IWGRDLDT---GMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp EEEEETTT---CCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEecCC---CcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence 55555554 7777876532110 111222 123335774 57788889999999999999877664321000
Q ss_pred -cccCC-CCCCC--------------------------eeEEEEccCCCEEEEEe-------------------------
Q 007489 370 -DREIQ-PSEPP--------------------------ITKMFTSSDGQWLAAVN------------------------- 396 (601)
Q Consensus 370 -~~~~~-~~~~~--------------------------i~~l~~spd~~~las~~------------------------- 396 (601)
..... ....+ -..++++|+..+|++..
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 00000 00000 03468888888776653
Q ss_pred ------------cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 397 ------------CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 397 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.+|.|..||+.+++..+..+... .+.+..+.. .+..+++++.|+.|+.||.++++.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCE
Confidence 35789999999999988876432 233223333 456788899999999999999884
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=2.2e-07 Score=81.85 Aligned_cols=208 Identities=9% Similarity=-0.001 Sum_probs=133.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE-ecC
Q 007489 268 VQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHD 345 (601)
Q Consensus 268 ~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~-~~d 345 (601)
.++..........+.|+. +.++.+ +.++.|+.+|+.+ ++.+-.+ +... .....+++ ++..|+.. -.+
T Consensus 47 ~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~T---gkv~~~~----l~~~-~FgeGit~--~g~~Ly~ltw~~ 115 (268)
T 3nok_A 47 REYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLES---AQPVWME----RLGN-IFAEGLAS--DGERLYQLTWTE 115 (268)
T ss_dssp EEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSC---SSCSEEE----ECTT-CCEEEEEE--CSSCEEEEESSS
T ss_pred EEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCC---CcEEeEE----CCCC-cceeEEEE--eCCEEEEEEccC
Confidence 334333334457888874 444444 6778899999886 4333111 2221 11123444 44455444 457
Q ss_pred CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc-CC---C
Q 007489 346 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-EG---A 421 (601)
Q Consensus 346 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~---~ 421 (601)
+.+.+||..+.+.+.++... ..-..++ +|++.|+.++.++.|+++|.++.+....+... ++ .
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~ 181 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYS------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVE 181 (268)
T ss_dssp CEEEEEETTTTEEEEEEECS------------SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred CEEEEEECCcCcEEEEEeCC------------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccc
Confidence 89999999999999999852 1123444 58898888888999999999999887776643 22 2
Q ss_pred ceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccC--CcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceE
Q 007489 422 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTF--VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAM 499 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~ 499 (601)
.++.+.|. ++...+..-.++.|.+.|.++++...+...... ........-.....+|+|+|+ .+++++-+..|-
T Consensus 182 ~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~--~~rlfVTGK~Wp 257 (268)
T 3nok_A 182 LINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG--SGRIFMTGKLWP 257 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT--TCCEEEEETTCS
T ss_pred cccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC--CCEEEEeCCCCC
Confidence 45678887 566555555688999999999987665322110 000001112246789999998 778999998886
Q ss_pred EEEeC
Q 007489 500 CVIDF 504 (601)
Q Consensus 500 ~~~~~ 504 (601)
.+|.+
T Consensus 258 ~~~ev 262 (268)
T 3nok_A 258 RLFEV 262 (268)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 66554
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.83 E-value=2.3e-06 Score=74.84 Aligned_cols=210 Identities=11% Similarity=0.100 Sum_probs=136.1
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEE-EcC--CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAY-SDH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
.+.++..........+.|++ +.++.+ +.. +.|+.+|+.+ +..+ ....++...- -..+++ ++..|...
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t---gkv~---~~~~l~~~~f-geGi~~--~~~~ly~l 80 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET---GRIL---QRAEVPPPYF-GAGIVA--WRDRLIQL 80 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT---CCEE---EEEECCTTCC-EEEEEE--ETTEEEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC---CCEE---EEEeCCCCcc-eeEEEE--eCCEEEEE
Confidence 44455444445567899987 555555 443 4789999876 4332 2233333211 122333 34555444
Q ss_pred -ecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc-CC
Q 007489 343 -GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-EG 420 (601)
Q Consensus 343 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~ 420 (601)
-.++.+.+||..+.+.+.++... ..=..++ +|++.|+.++.++.|.++|.++.+....+... ++
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~------------~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYP------------GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECS------------SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred EeeCCEEEEEECCcCcEEEEEeCC------------CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence 45789999999999999999852 1223444 58888888888999999999999887776653 22
Q ss_pred ---CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccc----ccCCCcEEEEEeCCCCCCCEEEE
Q 007489 421 ---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRY----QEFPGEVIGLSFSPSPSSSSVII 493 (601)
Q Consensus 421 ---~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~i~~~p~~~~~~~~~ 493 (601)
..++.+.|. +++..+..-.+..|.+.|.++++...+..... +.... ..-.....+|+++|+ .+++++
T Consensus 147 ~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~--l~~~~~~~~~~~~~vlNGIA~d~~--~~~lfV 220 (243)
T 3mbr_X 147 RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQA--LVPDADALTDSTNDVLNGIAFDAE--HDRLFV 220 (243)
T ss_dssp EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGG--GSTTTTSCCCTTSSCEEEEEEETT--TTEEEE
T ss_pred cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCc--CccccccccCCcCCceEEEEEcCC--CCEEEE
Confidence 345677876 56655555568899999999998766533221 11011 112246799999998 789999
Q ss_pred EcCceEEEEeCC
Q 007489 494 YSARAMCVIDFG 505 (601)
Q Consensus 494 ~~~~~~~~~~~~ 505 (601)
-+..|-.+|.+.
T Consensus 221 TGK~wp~~~~v~ 232 (243)
T 3mbr_X 221 TGKRWPMLYEIR 232 (243)
T ss_dssp EETTCSEEEEEE
T ss_pred ECCCCCcEEEEE
Confidence 999886666553
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.83 E-value=5.1e-06 Score=84.70 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=65.5
Q ss_pred EEeeecCCcEEEEECCCCceEEEEEeccCCCCCCCceE-EEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhcccccc-
Q 007489 2 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC-IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG- 79 (601)
Q Consensus 2 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~- 79 (601)
|+.++.++.|.-+|..+|+.+.++.............. -..+++ .+++++.++.++.|.-+|..+|+.+-.......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~ 149 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHG 149 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGG
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCC
Confidence 45566645599999999999999874321100000000 011222 356888888999999999999998765542210
Q ss_pred ---ceE-EEEEeC---CCC-EEEEEe------eCCeEEEEEeccCc
Q 007489 80 ---DVN-ALAAAP---SHN-RVFSTG------SDGQVILYKASCES 111 (601)
Q Consensus 80 ---~V~-~l~~s~---~~~-~l~s~~------~dg~i~vw~~~~~~ 111 (601)
.+. ...+.. +|+ .++.++ .++.|..+|..+++
T Consensus 150 ~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 150 AGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp GTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred cCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 111 111111 233 566654 37899999999887
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.83 E-value=1.2e-05 Score=73.48 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCEEEEEc----CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEE
Q 007489 276 RKIICSTISNSGMLFAYSD----HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYV 350 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~v 350 (601)
.....++++|++..|..+. .+.|..++++. ..... +. .........+++++++.+|+.+.. .+.|.+
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~--~~----~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRI--LA----QDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEE--EE----CTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEE--EE----ECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 3467888999655544432 24565665542 11111 11 112235688999998877766654 578999
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
+|.........+.. ......++. ++..|+.++ .++.|.++|..+++....++......+..+++.
T Consensus 194 ~~~~g~~~~~~~~~------------~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~ 259 (267)
T 1npe_A 194 LNPAQPGRRKVLEG------------LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (267)
T ss_dssp EETTEEEEEEEEEC------------CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred EecCCCceEEEecC------------CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeec
Confidence 99874433332221 233456665 455565555 568999999999988777764332347788888
Q ss_pred CCCCC
Q 007489 430 PQNNN 434 (601)
Q Consensus 430 p~~~~ 434 (601)
| ++.
T Consensus 260 ~-~~~ 263 (267)
T 1npe_A 260 L-SQC 263 (267)
T ss_dssp C-SCC
T ss_pred C-ccC
Confidence 8 653
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=2e-06 Score=87.51 Aligned_cols=152 Identities=10% Similarity=0.014 Sum_probs=89.9
Q ss_pred ccEEEEeecCCCCcceEEEeeecCC-----cCccceeEEEEc-cCC---CeEEEEecCCcEEEEEcCCCceeeeeccCcc
Q 007489 297 KPSLFELKKGKVGQGEWIINKRQLP-----RKLQFAHSMIFS-YDS---SQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 367 (601)
Q Consensus 297 ~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~s-~d~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 367 (601)
.|..+|..+ +..+|..+..... ....++. +... .+| ..++.++.+|.++++|..+|+++........
T Consensus 279 sv~Ald~~T---G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~ 354 (599)
T 1w6s_A 279 TIFGRDADT---GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (599)
T ss_dssp EEEEEETTT---CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred eEEEEeCCC---CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence 455555554 7777865532211 1111221 2222 467 4677788999999999999998876543210
Q ss_pred c--------ccc------cCC---CCC-----------CCeeEEEEccCCCEEEEEe-----------------------
Q 007489 368 E--------HDR------EIQ---PSE-----------PPITKMFTSSDGQWLAAVN----------------------- 396 (601)
Q Consensus 368 ~--------~~~------~~~---~~~-----------~~i~~l~~spd~~~las~~----------------------- 396 (601)
. ... ... ... ..-..++++|+.+++++..
T Consensus 355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 434 (599)
T 1w6s_A 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA 434 (599)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence 0 000 000 000 0112467787777665431
Q ss_pred ----------------cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 397 ----------------CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 397 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.+|.|..||+.+++..+..+... +...-.... .+.++++++.|+.|+.||.++++.
T Consensus 435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEe-cCCEEEEECCCCeEEEEECCCCCE
Confidence 34789999999999988875321 222111222 467888899999999999999984
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=1e-05 Score=73.93 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=61.1
Q ss_pred CcEEEEECCCCce-----EEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhccccccce
Q 007489 9 GYIRSWDAKLGYE-----IYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDV 81 (601)
Q Consensus 9 g~i~iwd~~~~~~-----~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V 81 (601)
+.|+.+++..... ...+. .....+..++|++++ .| ++-...+.|..++...+.....+.......
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~--------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLH--------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEE--------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred CeEEEEEecCcccccccceeeec--------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4789999865432 11222 123567899999865 54 455567899999997544322222223467
Q ss_pred EEEEEeCCCCEEEE-EeeCCeEEEEEeccC
Q 007489 82 NALAAAPSHNRVFS-TGSDGQVILYKASCE 110 (601)
Q Consensus 82 ~~l~~s~~~~~l~s-~~~dg~i~vw~~~~~ 110 (601)
..+++++++..|+. -...+.|.+++++..
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 89999997666664 455678999988653
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=1.1e-06 Score=78.59 Aligned_cols=213 Identities=12% Similarity=0.116 Sum_probs=136.0
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEE-c--CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE
Q 007489 266 LLVQVKSKASRKIICSTISNSGMLFAYS-D--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 342 (601)
Q Consensus 266 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~--~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~ 342 (601)
.+.++..........+++++++.+++++ . ++.|+++|+.+ +..+ ....+..+ .....+++. +..|+.+
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t---g~v~---~~i~l~~~-~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT---GKVE---NIHKMDDS-YFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT---CCEE---EEEECCTT-CCEEEEEEE--TTEEEEE
T ss_pred EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC---CCEE---EEEecCCC-cceEEEEEe--CCEEEEE
Confidence 4445544433456899999987655553 2 57899999876 4332 12223222 112244443 5566555
Q ss_pred e-cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC-C
Q 007489 343 G-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE-G 420 (601)
Q Consensus 343 ~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~-~ 420 (601)
. .++.+.++|..+.+.+.++... .-....+++||+.|+++..++.|.++|.++.+....++... +
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g-------------~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQ-------------MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG 148 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECC-------------SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred EecCCEEEEEECCCCcEEEEEECC-------------CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC
Confidence 5 4789999999999999888741 01123466688888888788999999999988877766432 1
Q ss_pred ---CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcc--cccC--CCcEEEEEeCCCCCCCEEEE
Q 007489 421 ---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRR--YQEF--PGEVIGLSFSPSPSSSSVII 493 (601)
Q Consensus 421 ---~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~--~~~v~~i~~~p~~~~~~~~~ 493 (601)
..+..+.|. ++...+....++.|.+.|+.+++...+..... +... ...+ .....+|+|+|+ .+++++
T Consensus 149 ~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--~~~~~~~~~~~~~~v~nGIa~~~~--~~~lfV 222 (266)
T 2iwa_A 149 HRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPN--LRKKLIDEGFRDIDVLNGIAWDQE--NKRIFV 222 (266)
T ss_dssp EECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHH--HHHHHHHTTCTTCCCEEEEEEETT--TTEEEE
T ss_pred cccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCC--cccccccccccccCceEEEEEcCC--CCEEEE
Confidence 236788887 45555555568899999999998755422110 0000 0011 246799999998 678888
Q ss_pred EcC--ceEEEEeCCC
Q 007489 494 YSA--RAMCVIDFGR 506 (601)
Q Consensus 494 ~~~--~~~~~~~~~~ 506 (601)
-+. ..++.+++..
T Consensus 223 Tgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTCSEEEEEEEEE
T ss_pred ECCCCCeEEEEEEec
Confidence 865 4466777643
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.69 E-value=4.1e-06 Score=79.06 Aligned_cols=113 Identities=12% Similarity=-0.021 Sum_probs=72.3
Q ss_pred eeEEEEccCCCeEEEE-ecCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec------
Q 007489 327 AHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------ 397 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~------ 397 (601)
...++++|++++|+++ +..+.|.+|++.... ....+.. ... ...++++++|++.++...
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------IPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------CSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------CCC-CCCeEECCCCCEEEEecCcccccc
Confidence 4679999999877666 456889999987421 1112211 122 778999999997766544
Q ss_pred ----CCeEEEEEcCCceEEEEeeccCC---CceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 398 ----FGDVYIFNLEIQRQHWFISRLEG---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 398 ----dg~i~iwd~~~~~~~~~~~~~~~---~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
.+.|..+|.+ ++....+....+ ..++.+++. ++.++++....+.|.++++....
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred cCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 4678888875 555445543322 357777773 56555555567899999987543
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.65 E-value=6.3e-06 Score=86.09 Aligned_cols=104 Identities=10% Similarity=-0.058 Sum_probs=62.0
Q ss_pred eEEEEcc-CCCeEEEEecCC-----------cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEE
Q 007489 328 HSMIFSY-DSSQLIIAGHDR-----------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 395 (601)
Q Consensus 328 ~~i~~s~-d~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~ 395 (601)
.++.|.. +++++++|+.++ .|.+||..+.+-........ .....-.+++..|++++++.|
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m--------p~~R~~~~~~~l~~g~i~v~G 473 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL--------YFARTFHTSVVLPDGSTFITG 473 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC--------SSCCBSCEEEECTTSCEEEEC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC--------CCCcccCCeEECCCCCEEEEC
Confidence 4445543 677788877532 57778876554332220100 022223456677899999999
Q ss_pred ecC-----------CeEEEEEcCCceEEEEeeccC-C-CceeEEEecCCCCCEEEEEeC
Q 007489 396 NCF-----------GDVYIFNLEIQRQHWFISRLE-G-ASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 396 ~~d-----------g~i~iwd~~~~~~~~~~~~~~-~-~~v~~l~~~p~~~~~l~~~~~ 441 (601)
+.+ ..+.+||..+.+... +.... . ....+..+.| ++++++.|+.
T Consensus 474 G~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 474 GQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred CcccCcCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 854 468999998876542 22221 1 1223445668 8999999885
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.62 E-value=1e-05 Score=82.58 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=91.4
Q ss_pred CccEEEEeecCCCCcceEEEeeecCC-----cCccceeEEEEc-cCCC---eEEEEecCCcEEEEEcCCCceeeeeccCc
Q 007489 296 VKPSLFELKKGKVGQGEWIINKRQLP-----RKLQFAHSMIFS-YDSS---QLIIAGHDRRIYVVDVSSSELLHTFTPCR 366 (601)
Q Consensus 296 ~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~s-~d~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 366 (601)
+.|..+|..+ +..+|..+..... ....++. +... .+|+ .++.++.+|.++++|..+|+++..+....
T Consensus 291 ~~v~AlD~~T---G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 291 SGQVGVDPSS---GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp SEEEEECTTT---CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred ceEEEEeCCC---CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccccc
Confidence 3555666554 7778876532111 1111221 1222 4674 68889999999999999999887665421
Q ss_pred ccc---------cc-----cCC---------CCCC-----------CeeEEEEccCCCEEEEEe----------------
Q 007489 367 EEH---------DR-----EIQ---------PSEP-----------PITKMFTSSDGQWLAAVN---------------- 396 (601)
Q Consensus 367 ~~~---------~~-----~~~---------~~~~-----------~i~~l~~spd~~~las~~---------------- 396 (601)
... .. ... .... .-..++++|+..++++..
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 000 00 000 0000 012467777766555432
Q ss_pred -----------------cCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 397 -----------------CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 397 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
.+|.|..||+.+++..+..+... ++..-.... .+.++++++.|+.|+.||.++++.
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEe-CCCEEEEECCCCcEEEEECCCCCE
Confidence 36889999999999988876432 222212222 456888899999999999999984
No 259
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.59 E-value=5.5e-06 Score=74.13 Aligned_cols=197 Identities=7% Similarity=-0.024 Sum_probs=126.8
Q ss_pred eccccCCCeEEEEEeC----CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCC
Q 007489 223 HNTIFSHTSLLLVQYS----CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHV 296 (601)
Q Consensus 223 ~~~~~~~~~~~l~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~~ 296 (601)
..+.+++++.+.++.. +.+.+++..+.. .+.++..+.......+++. +..|.. -.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~---------------v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGK---------------VENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCC---------------EEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCC---------------EEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4566788666665542 577777776543 4555554433334455554 444444 3678
Q ss_pred ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCC
Q 007489 297 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 376 (601)
Q Consensus 297 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 376 (601)
.+.++|..+ ...+-. .... .+ ....+++||++++++..++.|.++|..+.+.+..+..... ...
T Consensus 87 ~v~viD~~t---~~v~~~---i~~g--~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~------~~p 150 (266)
T 2iwa_A 87 IGFIYDRRT---LSNIKN---FTHQ--MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN------GHR 150 (266)
T ss_dssp EEEEEETTT---TEEEEE---EECC--SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET------TEE
T ss_pred EEEEEECCC---CcEEEE---EECC--CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC------Ccc
Confidence 888888765 333221 2222 11 1234667898888888889999999999888877764210 001
Q ss_pred CCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC------------CCceeEEEecCCCCCEEEE-EeCCC
Q 007489 377 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE------------GASVTAAGFPPQNNNVLII-TTSSN 443 (601)
Q Consensus 377 ~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~l~~~p~~~~~l~~-~~~dg 443 (601)
-..++.+.|. +|+..+....++.|.+.|..+++....+.... ......++|+| +++.|++ +...+
T Consensus 151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFVTGKLWP 228 (266)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEEEETTCS
T ss_pred cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEEEEECCCCC
Confidence 2246788887 77555555567899999999999887776420 13568999999 7665554 55678
Q ss_pred eEEEEEcCCCC
Q 007489 444 QVYVFDVEAKQ 454 (601)
Q Consensus 444 ~v~vwd~~~~~ 454 (601)
.|++.++....
T Consensus 229 ~v~~i~l~~~~ 239 (266)
T 2iwa_A 229 KLFEIKLHLVR 239 (266)
T ss_dssp EEEEEEEEECC
T ss_pred eEEEEEEeccc
Confidence 99999987643
No 260
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.59 E-value=0.00043 Score=65.09 Aligned_cols=156 Identities=13% Similarity=0.014 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
..+..+++.+++.+++++..+.+.. ... .+...|+.... .....+..+++.++++.+ +++.+|.+++.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~--S~d--~gG~tW~~~~~---~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYS--TWE--PGQTAWEPHNR---TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN 234 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEE--EEC--TTCSSCEEEEC---CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE
T ss_pred cceEEEEEcCCCcEEEEECCCcEEE--EeC--CCCCceeECCC---CCCCccceeEECCCCCEE-EEeCCceEEEecCCC
Confidence 4577888999999888887765433 322 22334543321 234567889999988765 455678777764332
Q ss_pred CceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc--CCCceeEEEecCCCC
Q 007489 356 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL--EGASVTAAGFPPQNN 433 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~ 433 (601)
++.-..+.... + .....+..+++.+++.+++++. +|.| .+..+.++....+... ....+.++.|.+ ++
T Consensus 235 G~tW~~~~~~~------~-~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~~ 304 (327)
T 2xbg_A 235 SENWGELLSPL------R-RNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-PD 304 (327)
T ss_dssp EEEECCCBCTT------S-SCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-TT
T ss_pred CCeeEeccCCc------c-cCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-CC
Confidence 43322222100 0 0234588999999888777665 6666 4566666554344322 124678898975 44
Q ss_pred CEEEEEeCCCeEEEEEc
Q 007489 434 NVLIITTSSNQVYVFDV 450 (601)
Q Consensus 434 ~~l~~~~~dg~v~vwd~ 450 (601)
.+++++.+|.|.-++-
T Consensus 305 -~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 305 -QGFILGQKGILLRYVT 320 (327)
T ss_dssp -EEEEECSTTEEEEECC
T ss_pred -ceEEEcCCceEEEEcC
Confidence 5777788998766653
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.58 E-value=2e-05 Score=74.31 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec----------
Q 007489 277 KIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---------- 344 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---------- 344 (601)
....++++|+|+.|.++ ..+.|..|++.....+. ...-. .+.+ ...+++.++|+++++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~--~~~~~-~~~g----P~gi~~d~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT--AEVLV-KIPN----PGNIKRNADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC--EEEEE-ECSS----EEEEEECTTSCEEEEEEEETTSSTTSCE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc--cceEE-eCCC----CCCeEECCCCCEEEEecCcccccccCCC
Confidence 35678999999866553 45778888876411111 11111 1222 578899999987666544
Q ss_pred CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc
Q 007489 345 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 409 (601)
Q Consensus 345 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~ 409 (601)
.+.|..+|. .++.+..+...... ....++.+++ .+++++++...++.|.+++++..
T Consensus 259 ~~~v~~~d~-~G~~~~~~~~~~g~-------~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 259 DPKGIKFDE-FGNILEVIPLPPPF-------AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEEECT-TSCEEEEEECCTTT-------TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ccEEEEECC-CCCEEEEEECCCCC-------ccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 466888886 47777766542100 1244667776 46665556567788999987644
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.52 E-value=9.4e-05 Score=69.01 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=65.7
Q ss_pred eeEEEEccCCCeEEEEe-cCCcEEEEEcCC-Cce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 327 AHSMIFSYDSSQLIIAG-HDRRIYVVDVSS-SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 327 v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
.+.+ ++++++|+++. ..+.|.+|++.. ++. ...+.. ......++++++|+++++....+.|.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------------~~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------------QTNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------------SCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------------cCCCCCeEECCCCCEEEEeCCCCeEE
Confidence 3455 78888776655 467899999864 332 111211 12356789999999877777788999
Q ss_pred EEEcCCceEEE--EeeccCCCceeEEEec---CCCCCEEEEEeCCC
Q 007489 403 IFNLEIQRQHW--FISRLEGASVTAAGFP---PQNNNVLIITTSSN 443 (601)
Q Consensus 403 iwd~~~~~~~~--~~~~~~~~~v~~l~~~---p~~~~~l~~~~~dg 443 (601)
+++.+ ++... .+.. ....+++++|. | +++.|++++..+
T Consensus 237 ~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG-TCTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc-ccCCceEEEEecccC-CCCEEEEECCCC
Confidence 99986 44322 1221 22468999998 8 877777776543
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=0.00015 Score=67.67 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=48.4
Q ss_pred eEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCC--eEEEEEeccCc
Q 007489 38 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASCES 111 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vw~~~~~~ 111 (601)
.....++|+++| .+++-..++.|..||... +....+. ....+..+++.++|+++++..... .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 457789999999 555555789999999874 3333332 235688999999999665543322 35556655554
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=0.00023 Score=63.23 Aligned_cols=211 Identities=14% Similarity=0.148 Sum_probs=127.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 275 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
...+..++++|++..|.+..+..-+|+.++.. +..+ ....+.+ ....-.|++.+++.++++.-.++.+.++++.
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~---~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLI---RTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEE---EEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEE---EEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 36799999999877666643345566767652 3322 2222332 2356788888888766665567889999885
Q ss_pred CCce---eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCC---ceEEEEee------ccCCCc
Q 007489 355 SSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI---QRQHWFIS------RLEGAS 422 (601)
Q Consensus 355 ~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~---~~~~~~~~------~~~~~~ 422 (601)
.... +....-.. .....+.....|+|+|+++.|.++.......||.++. ......+. ..+-..
T Consensus 100 ~~~~i~~~~~~~~~~-----~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 100 PNSEVKILKKIKIPL-----QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp TTCCEEEEEEEECCC-----SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred CCCeeeeeeeecccc-----ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 5432 22221100 0011455689999999998777777665556666542 11111111 112245
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCccccc---CCCcEEEEEeCCCCCCCEEEEEcCceE
Q 007489 423 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE---FPGEVIGLSFSPSPSSSSVIIYSARAM 499 (601)
Q Consensus 423 v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~~~~~~~~~~~~ 499 (601)
+.+++++|.++.+++....+..|.++|.+......++ +...+.+ .-....+|+|.++ ++..++.-.+-+
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~------L~~g~~~l~~~~~qpEGia~d~~--G~lyIvsE~n~~ 246 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMS------LTKGSRGLSHNIKQAEGVAMDAS--GNIYIVSEPNRF 246 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE------CSTTGGGCSSCCCSEEEEEECTT--CCEEEEETTTEE
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEE------cCCccCCcccccCCCCeeEECCC--CCEEEEcCCceE
Confidence 7899999967777777778899999998865322221 1111111 1236799999998 444444467777
Q ss_pred EEEeC
Q 007489 500 CVIDF 504 (601)
Q Consensus 500 ~~~~~ 504 (601)
++|..
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77754
No 265
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.42 E-value=0.0035 Score=66.72 Aligned_cols=378 Identities=12% Similarity=0.120 Sum_probs=194.0
Q ss_pred eEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhh-hccc----cccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 38 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ-AHSF----HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 38 ~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~-~~~~----h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
..|.++....+|.|-.|...| |..+|..+++... .... ....|.++...+++..|..|.. +-+..++..++..
T Consensus 146 ~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp SCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred CeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 458888877788555555554 7778877654321 1111 1234888888887776666664 4577788766431
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
..... .....|.++... .+| .|..|..+
T Consensus 224 ---------------~~~~~--l~~~~i~~i~~d---------~~g-------------------------~lWigT~~- 251 (758)
T 3ott_A 224 ---------------KQTEA--FHNNSIKSLALD---------GNG-------------------------DLLAGTDN- 251 (758)
T ss_dssp ---------------EEEEE--EEEEEEEEEEEC---------TTC-------------------------CEEEEETT-
T ss_pred ---------------EeccC--CCCCeEEEEEEc---------CCC-------------------------CEEEEeCC-
Confidence 11111 123456777654 444 34445544
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE-
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK- 271 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (601)
-|.+++..+.....-......+.......+.++....++.+.+...+.+.+.... ... ......
T Consensus 252 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~--~~~-------------~~~~~~~ 316 (758)
T 3ott_A 252 GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYGISLSRYN--SAL-------------QFIPISQ 316 (758)
T ss_dssp EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSSEEEECCC--C-C-------------EEEEHHH
T ss_pred ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCcccccccC--Cce-------------eEEeccc
Confidence 4777776543211000000011111223466666666665444443334333211 100 000000
Q ss_pred ---ecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEee--ecCCcCccceeEEEEccCCCeEEEEecCC
Q 007489 272 ---SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK--RQLPRKLQFAHSMIFSYDSSQLIIAGHDR 346 (601)
Q Consensus 272 ---~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~s~d~~~l~~~~~dg 346 (601)
......|.++....+|.+.+.... -+..++..........+ ... ....-....|.++.-..+|++. +|+ ++
T Consensus 317 ~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~ 392 (758)
T 3ott_A 317 ITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIW-YRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DG 392 (758)
T ss_dssp HSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEE-ECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TT
T ss_pred CCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEE-eccCCcCCCCCCCceEEEEECCCCCEE-EEe-CC
Confidence 011245888888888887666543 34444433200001100 100 0001112458888887777654 456 45
Q ss_pred cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-----eEE---EEee--
Q 007489 347 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-----RQH---WFIS-- 416 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-----~~~---~~~~-- 416 (601)
-+..||..+++...-...... .......|.++...++|++. .|+..+-|.++|..+. ... ..+.
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNT-----GTYNTNWTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC-------CBSSSEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred cHhhcCcCCCcEEEeecCCCc-----CCCCCceEEEEEEcCCCCEE-EEECCCceEEEccccccccCCcceecccccccc
Confidence 699999877654322111000 00023468888887777644 4555555888886531 111 1111
Q ss_pred -ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEc
Q 007489 417 -RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 417 -~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
......|.++...+ ++.+.+.++..+-|..||..+++...... ..+. ....+.++.... ++.+|+..
T Consensus 467 ~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~-------~~~~-~~~~~~~i~~d~---~g~lWigt 534 (758)
T 3ott_A 467 NGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFA-------DELT-GEKSPNYLLCDE---DGLLWVGF 534 (758)
T ss_dssp GTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECT-------TTSC-GGGCEEEEEECT---TSCEEEEE
T ss_pred cccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecC-------CCcC-CCcccceEEECC---CCCEEEEe
Confidence 12224588898888 88766644444558899998776533210 0011 123566776554 47899998
Q ss_pred CceEEEEeCCC
Q 007489 496 ARAMCVIDFGR 506 (601)
Q Consensus 496 ~~~~~~~~~~~ 506 (601)
..++++++...
T Consensus 535 ~~Gl~~~~~~~ 545 (758)
T 3ott_A 535 HGGVMRINPKD 545 (758)
T ss_dssp TTEEEEECC--
T ss_pred cCceEEEecCC
Confidence 88999998643
No 266
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.41 E-value=0.0011 Score=72.78 Aligned_cols=348 Identities=12% Similarity=0.045 Sum_probs=178.9
Q ss_pred cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhc-cccccceEEEEEeC
Q 007489 10 YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAP 88 (601)
Q Consensus 10 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~s~ 88 (601)
.|++.+...+..+..+.. .....|.+.+.+ +.+++.++ .+.+.++++..+++.... ..-...|.|+++.+
T Consensus 493 ~Irli~~~~~~~~~~w~~-------p~~~~I~~As~n-~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~ 563 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKE-------PQAKNISVASCN-SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITP 563 (1158)
T ss_dssp CEEEEESSSCCEEEEECC-------TTCCCCCEEEEC-SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCC
T ss_pred EEEEEECCCCeEEEEEEC-------CCCCEEEEEEeC-CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeec
Confidence 466666655556666652 122345555543 33555553 577888877655432111 12356899999986
Q ss_pred C------CCEEEEEee-CCeEEEEEeccCcCCCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCccccc
Q 007489 89 S------HNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 161 (601)
Q Consensus 89 ~------~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~ 161 (601)
. +++++.|.. |++|+|+++.+.+. . ....+.. .....++.+.. -+
T Consensus 564 ~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-------------~--~~~~L~~-~~~p~si~l~~--------~~---- 615 (1158)
T 3ei3_A 564 LGDSNGLSPLCAIGLWTDISARILKLPSFEL-------------L--HKEMLGG-EIIPRSILMTT--------FE---- 615 (1158)
T ss_dssp CSSSTTCCSEEEEEETTTTEEEEEETTTCCE-------------E--EEEECCS-SCCEEEEEEEE--------ET----
T ss_pred CCCCcccccEEEEEECCCCEEEEEECCCCCe-------------E--EEEECCC-CCCCcEEEEEE--------eC----
Confidence 3 368888886 99999999976431 0 0111111 12334444320 00
Q ss_pred ccCCCCccccccccccccCCCCEEEEecCCCeEEEEeccccC-CcCCC-ccCCCCCccceeeeeccccCCCeEEEEEeCC
Q 007489 162 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-KFSPH-EICPAPQRVPIHLVHNTIFSHTSLLLVQYSC 239 (601)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (601)
+..+|..|-.||.+..+.+.... .+... .............+ .......+++++++
T Consensus 616 -------------------~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~---~~~~~~~V~a~s~r 673 (1158)
T 3ei3_A 616 -------------------SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF---RSLSTTNVFACSDR 673 (1158)
T ss_dssp -------------------TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEE---ESSSCEEEEEESSS
T ss_pred -------------------CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEE---eeCCceeEEEECCC
Confidence 11378888899987666554311 11100 00001111111111 11122334555554
Q ss_pred eeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC--CCEEEEEcCCccEEEEeecCCCCcceEEEee
Q 007489 240 RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS--GMLFAYSDHVKPSLFELKKGKVGQGEWIINK 317 (601)
Q Consensus 240 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~ 317 (601)
..-++.-. . .+.-.......--....|+.. ..-++...++.++|..+.. . ..|.+.+
T Consensus 674 p~liy~~~---~--------------~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~---~-~~~~~~~ 732 (1158)
T 3ei3_A 674 PTVIYSSN---H--------------KLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDE---I-QKLHIRT 732 (1158)
T ss_dssp CEEEEESS---S--------------SEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECC---S-SSEEEEE
T ss_pred CEEEEEcC---C--------------ceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecc---c-CCeeEEE
Confidence 43333321 0 011111111111233445432 2445565667799999864 2 2355555
Q ss_pred ecCCcCccceeEEEEccCCCeEEEEecC-------------------------------------------------CcE
Q 007489 318 RQLPRKLQFAHSMIFSYDSSQLIIAGHD-------------------------------------------------RRI 348 (601)
Q Consensus 318 ~~~~~~~~~v~~i~~s~d~~~l~~~~~d-------------------------------------------------g~i 348 (601)
..+.. .++.++++|+.+.++++..+ +.|
T Consensus 733 ipL~~---Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i 809 (1158)
T 3ei3_A 733 VPLYE---SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNL 809 (1158)
T ss_dssp EECSS---EEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEE
T ss_pred EeCCC---CceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEE
Confidence 55543 66888999888776554421 125
Q ss_pred EEEEcCCCceeeeeccCcccccccCCCCCCCeeEEE---EccC-CCEEEEEe----------cCCeEEEEEcCCceEEEE
Q 007489 349 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF---TSSD-GQWLAAVN----------CFGDVYIFNLEIQRQHWF 414 (601)
Q Consensus 349 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~---~spd-~~~las~~----------~dg~i~iwd~~~~~~~~~ 414 (601)
+++|-.+.+.+..+.-. ....+.+++ |..+ ..+|+.|. ..|+|++|++...+....
T Consensus 810 ~lidp~t~~~i~~~~l~----------~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv 879 (1158)
T 3ei3_A 810 LIIDQHTFEVLHAHQFL----------QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 879 (1158)
T ss_dssp EEEETTTCCEEEEEECC----------TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred EEEeCCCCeEEEEEeCC----------CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence 55665555554444321 223344444 3332 46888886 358999999986554332
Q ss_pred eeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 415 ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 415 ~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
....-.++|++++-- .|. |++|- ..+|++|++...+
T Consensus 880 ~~~~v~g~v~al~~~--~g~-Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEF--NGK-LLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEESSCEEEEEEE--TTE-EEEEE-TTEEEEEEECTTS
T ss_pred EEEEcCCcCEEEeee--CCE-EEEEc-CCEEEEEECCCCc
Confidence 222223688888754 354 44433 4789999998654
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.00066 Score=60.29 Aligned_cols=167 Identities=13% Similarity=0.051 Sum_probs=102.6
Q ss_pred CCCeEEEEEcCCCCEEEEE-cCCccEEEEeecCCCCcceEEEeeecC----CcCccceeEEEEccCCCeEEEEecCCcEE
Q 007489 275 SRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQL----PRKLQFAHSMIFSYDSSQLIIAGHDRRIY 349 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~i~~s~d~~~l~~~~~dg~i~ 349 (601)
....-.+++.+++.++++. .++.+.++++.. .+ .++.+....+ .........++|+|+++.|+++.......
T Consensus 69 ~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~--~~-~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 69 VKDLETIEYIGDNQFVISDERDYAIYVISLTP--NS-EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp CSSEEEEEECSTTEEEEEETTTTEEEEEEECT--TC-CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred CCChHHeEEeCCCEEEEEECCCCcEEEEEcCC--CC-eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 3557778888888876664 556788888775 22 2333333322 12345678999999998888888776666
Q ss_pred EEEcC---CCceeeeeccCcccccccCCCCCCCeeEEEEccCC-CEEEEEecCCeEEEEEcCCceEEEEeeccCC-----
Q 007489 350 VVDVS---SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRLEG----- 420 (601)
Q Consensus 350 vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----- 420 (601)
+|.+. ....+..+..... ........+..++++|.. ++++.......|.++|.+.. ....+.-..+
T Consensus 146 i~~~~g~~~~~~l~i~~~~~~----~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 146 VYKVNGLLSSNELHISKDKAL----QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLS 220 (255)
T ss_dssp EEEEESTTCSSCCEEEECHHH----HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCS
T ss_pred EEEEcccccCCceeeecchhh----ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcc
Confidence 66654 1111222211000 000133457899999964 45666677788999998765 4433332211
Q ss_pred ---CceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 421 ---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 421 ---~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
...-.|+|.+ +|+ |.++++-+.+++|.-.
T Consensus 221 ~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 221 HNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp SCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC-
T ss_pred cccCCCCeeEECC-CCC-EEEEcCCceEEEEEec
Confidence 2578999999 887 5566777877777543
No 268
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.36 E-value=4.4e-05 Score=67.33 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=68.3
Q ss_pred EEeeecCC--cEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-e-EEEEcCCCcEEEeeCCccchhhhcccc
Q 007489 2 LYSGSSDG--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRHGTLLQAHSFH 77 (601)
Q Consensus 2 l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~-l~s~~~dg~i~vwd~~~~~~~~~~~~h 77 (601)
..+.+.+| .|+++|+++|+.+.++..+. ........+++ + .+..-.++.+.++|..+.+.+.++...
T Consensus 56 yestG~~g~S~v~~vD~~Tgkv~~~~~l~~---------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~ 126 (262)
T 3nol_A 56 YESTGLNGRSSIRKVDIESGKTLQQIELGK---------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD 126 (262)
T ss_dssp EEEEEETTEEEEEEECTTTCCEEEEEECCT---------TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCCCceEEEEECCCCcEEEEEecCC---------ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC
Confidence 34556655 89999999999999998531 12221122234 4 445556899999999999999888743
Q ss_pred ccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcC
Q 007489 78 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 112 (601)
Q Consensus 78 ~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 112 (601)
. ....+++|++.|+.+..++.|.++|..+.+.
T Consensus 127 ~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v 158 (262)
T 3nol_A 127 G---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP 158 (262)
T ss_dssp S---CCCCEEECSSCEEECCSSSEEEEECTTTCSE
T ss_pred C---CceEEecCCCEEEEECCCCeEEEEcCCCCeE
Confidence 2 2234446788777766678899999888653
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.30 E-value=5.2e-05 Score=79.15 Aligned_cols=164 Identities=9% Similarity=0.065 Sum_probs=85.8
Q ss_pred EEEEcCCCCEEEEEc--C-----CccEEEEeecCCCCcceEEEee----ecCCcCccceeEEEEccCCCeEEEEecCC--
Q 007489 280 CSTISNSGMLFAYSD--H-----VKPSLFELKKGKVGQGEWIINK----RQLPRKLQFAHSMIFSYDSSQLIIAGHDR-- 346 (601)
Q Consensus 280 ~~~~s~~g~~l~~~~--~-----~~v~l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~s~d~~~l~~~~~dg-- 346 (601)
+++..++|++++.|. + ..+.+||... ..|.... ..+.... ....+..++..++.++.+|
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t-----~~W~~~~~~~~~p~~~~~---~~~~~~~~~~iyv~Gg~~g~~ 362 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS-----KTWTSLPNAKVNPMLTAD---KQGLYRSDNHAWLFGWKKGSV 362 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETTT-----TEEEEETTSCSGGGCCCC---TTGGGTTTCSCCEEECGGGCE
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCCCC-----CcceeCCCcccccccccc---ccceeecCCceEEEECCCCcE
Confidence 344556788777732 2 4577777754 2354321 0111100 0112334555556665444
Q ss_pred -------cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc-cCCCEEEEEecCC-----------eEEEEEcC
Q 007489 347 -------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS-SDGQWLAAVNCFG-----------DVYIFNLE 407 (601)
Q Consensus 347 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd~~~las~~~dg-----------~i~iwd~~ 407 (601)
.+..||..+.............. ........-.++.|. .++++++.|+.++ .|.+||..
T Consensus 363 ~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~--~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~ 440 (656)
T 1k3i_A 363 FQAGPSTAMNWYYTSGSGDVKSAGKRQSNR--GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG 440 (656)
T ss_dssp EECCSSSEEEEEECSTTCEEEEEEECEETT--EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred EEecCccceeeeecCCcceeecCCcccccc--ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC
Confidence 46788876655332222110000 000001122344454 3778888887543 68889988
Q ss_pred CceEEEEe-eccCC-CceeEEEecCCCCCEEEEEeCC-----------CeEEEEEcCCCC
Q 007489 408 IQRQHWFI-SRLEG-ASVTAAGFPPQNNNVLIITTSS-----------NQVYVFDVEAKQ 454 (601)
Q Consensus 408 ~~~~~~~~-~~~~~-~~v~~l~~~p~~~~~l~~~~~d-----------g~v~vwd~~~~~ 454 (601)
+....... ..++. ..-.+++..| +++++++++.+ ..+.+||..+++
T Consensus 441 ~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 441 TSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 77654332 12222 2234556678 89999999864 568999998754
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.26 E-value=9.8e-05 Score=65.13 Aligned_cols=194 Identities=11% Similarity=0.110 Sum_probs=111.5
Q ss_pred ceEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEE-EEeeCCeEEEEEeccCcCCC
Q 007489 37 ELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILYKASCESIGP 114 (601)
Q Consensus 37 ~~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~ 114 (601)
..-...|.|+ ++ .+++.+.+|.|+++|+++++.+.++ - ..........++++.|+ ..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-- 128 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-- 128 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--
Confidence 3445677787 45 7788888999999999999988877 2 23333322333455555 445689999999998764
Q ss_pred CCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeE
Q 007489 115 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 194 (601)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v 194 (601)
+..+.. ...-..++ +|++ .|+.+..++.|
T Consensus 129 ---------------~~ti~~-~~eGwGLt-----------~Dg~------------------------~L~vSdGs~~l 157 (268)
T 3nok_A 129 ---------------ERTTRY-SGEGWGLC-----------YWNG------------------------KLVRSDGGTML 157 (268)
T ss_dssp ---------------EEEEEC-SSCCCCEE-----------EETT------------------------EEEEECSSSEE
T ss_pred ---------------EEEEeC-CCceeEEe-----------cCCC------------------------EEEEECCCCEE
Confidence 344432 22223444 4554 55555568899
Q ss_pred EEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeC--CeeEEeeccccCCcccCCCCCCCCCcceEEEEEe
Q 007489 195 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 272 (601)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (601)
.++|..+++..........+ .....+..+.+. +|.+.+..- +.|.+.+..+.. .+..+..
T Consensus 158 ~~iDp~T~~v~~~I~V~~~g--~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~---------------V~~~Idl 219 (268)
T 3nok_A 158 TFHEPDGFALVGAVQVKLRG--QPVELINELECA-NGVIYANIWHSSDVLEIDPATGT---------------VVGVIDA 219 (268)
T ss_dssp EEECTTTCCEEEEEECEETT--EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB---------------EEEEEEC
T ss_pred EEEcCCCCeEEEEEEeCCCC--cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc---------------EEEEEEC
Confidence 99999987654433322111 111122223333 455444443 444444433222 3444443
Q ss_pred c------------CCCCeEEEEEcCCCCEEEEEcCCccEEEEee
Q 007489 273 K------------ASRKIICSTISNSGMLFAYSDHVKPSLFELK 304 (601)
Q Consensus 273 ~------------~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~ 304 (601)
. ...-.+.+|++|+++.|.+....--++|.++
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~ 263 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR 263 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence 2 1245789999998766655444344555544
No 271
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.22 E-value=0.0074 Score=61.95 Aligned_cols=198 Identities=8% Similarity=-0.011 Sum_probs=115.9
Q ss_pred CCCeEEEEEcCCCCEEEEEc--CCccEEEEeecCCCCcceEEEeeecC--CcCccceeEEEEccCCCeEE-EEecCCcEE
Q 007489 275 SRKIICSTISNSGMLFAYSD--HVKPSLFELKKGKVGQGEWIINKRQL--PRKLQFAHSMIFSYDSSQLI-IAGHDRRIY 349 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~--~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~s~d~~~l~-~~~~dg~i~ 349 (601)
...+.++++.+....|..++ .+.|+.++++ +.....+-.... .........+++...++.|+ +-+..+.|.
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~----g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~ 414 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQED----GSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcC----CCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEE
Confidence 46688999998777766654 4445444433 211111111100 01234568899998876665 445578899
Q ss_pred EEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCC--eEEEEEcCCceEEEEeeccCCCceeEE
Q 007489 350 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFG--DVYIFNLEIQRQHWFISRLEGASVTAA 426 (601)
Q Consensus 350 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l 426 (601)
+.++. |+....+... .......|++.|...+|+..+ ... .|...++++......+.. .-..++.|
T Consensus 415 v~~~~-G~~~~~l~~~----------~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~-~l~~P~gl 482 (628)
T 4a0p_A 415 VTRLD-GRSVGVVLKG----------EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFS-GLSKPIAL 482 (628)
T ss_dssp EEETT-SCEEEEEEEC----------TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECS-SCSCEEEE
T ss_pred EEECC-CCeEEEEEeC----------CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEec-cCCCccEE
Confidence 99986 6655444321 345689999999555554443 222 677777776654433332 22468999
Q ss_pred EecCCCCCEEEEEeC-CCeEEEEEcCCCCcccchhcccCCcCcccc-cCCCcEEEEEeCCCCCCCEEEEE--cCceEEEE
Q 007489 427 GFPPQNNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ-EFPGEVIGLSFSPSPSSSSVIIY--SARAMCVI 502 (601)
Q Consensus 427 ~~~p~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~ 502 (601)
++.+ ..+.|..+.. .+.|..++++...... +. .......+|++..+ .++.- ....+..+
T Consensus 483 a~D~-~~~~LYw~D~~~~~I~~~~~dG~~r~~------------~~~~~~~~P~glav~~~----~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 483 ALDS-RLGKLFWADSDLRRIESSDLSGANRIV------------LEDSNILQPVGLTVFEN----WLYWIDKQQQMIEKI 545 (628)
T ss_dssp EEET-TTTEEEEEETTTTEEEEEETTSCSCEE------------EECSSCSCEEEEEEETT----EEEEEETTTTEEEEE
T ss_pred EEeC-CCCEEEEEeCCCCEEEEEeCCCCceEE------------EEcCCCCCcEEEEEECC----EEEEEECCCCeEEEE
Confidence 9999 7777777754 5789999997654221 11 22245677776543 44443 34556666
Q ss_pred eCC
Q 007489 503 DFG 505 (601)
Q Consensus 503 ~~~ 505 (601)
+..
T Consensus 546 ~k~ 548 (628)
T 4a0p_A 546 DMT 548 (628)
T ss_dssp ETT
T ss_pred ECc
Confidence 653
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.22 E-value=0.00074 Score=66.07 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=41.7
Q ss_pred eEEEEEEEeeC---CeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEe
Q 007489 38 LCIWSLLSLRC---GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 97 (601)
Q Consensus 38 ~~V~~v~~s~~---g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 97 (601)
.....|+|.|+ |.|..++..+.|+.+|..+++..... ........++++++|+ |+.+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad 199 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVD 199 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEc
Confidence 34678899985 56666655589999999877654433 3445688999999999 55444
No 273
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.20 E-value=0.0082 Score=61.55 Aligned_cols=159 Identities=6% Similarity=0.034 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE-ecCCcEEEE
Q 007489 275 SRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVV 351 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~-~~dg~i~vw 351 (601)
-..+.++++.+.+..|..+ ..+.|+.++++. ..... + ..........+++.+.+..|+.+ +..+.|.+.
T Consensus 348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~--v----~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGSQF--V----VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE--E----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--CccEE--E----EECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 3567889999866666554 344555554432 11111 1 12223355788998755555444 456889999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec--CCeEEEEEcCCceEEEEeeccCCCceeEEEec
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 429 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~ 429 (601)
++. ++....+... .-.....|++.|...+|+..+. .+.|...+++......... ..-..++.|++.
T Consensus 420 ~~~-G~~~~~l~~~----------~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~l~~P~GlalD 487 (619)
T 3s94_A 420 RLN-GTMRKILISE----------DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN-TSLGWPNGLALD 487 (619)
T ss_dssp ETT-SCSCEEEECT----------TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEE
T ss_pred eCC-CCeEEEEEEC----------CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe-CCCCCCeeeEEc
Confidence 986 4433344321 3456889999997666665553 3678878887655432332 222578899999
Q ss_pred CCCCCEEEEEeC-CCeEEEEEcCCCC
Q 007489 430 PQNNNVLIITTS-SNQVYVFDVEAKQ 454 (601)
Q Consensus 430 p~~~~~l~~~~~-dg~v~vwd~~~~~ 454 (601)
+ +...|..+.. .+.|..++++...
T Consensus 488 ~-~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 488 Y-DEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp T-TTTEEEEEETTTTEEEEEESSSCC
T ss_pred c-cCCEEEEEECCCCEEEEEecCCCc
Confidence 8 7777777754 4789999987654
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.19 E-value=0.00011 Score=77.98 Aligned_cols=155 Identities=10% Similarity=0.103 Sum_probs=95.0
Q ss_pred CeEEEEEc-CCCCEEEEE--cCC----ccEEEEeecCCCC-cceEEEeeecCCcCccceeEEEEccCCCeEEEEecC---
Q 007489 277 KIICSTIS-NSGMLFAYS--DHV----KPSLFELKKGKVG-QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD--- 345 (601)
Q Consensus 277 ~i~~~~~s-~~g~~l~~~--~~~----~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d--- 345 (601)
.+...+|| |||++||.+ ..| .|+++++.. + ..+ . ..+. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~---g~~~l---~-~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD---PSQTI---A-DKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC---TTCCC---C-CCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC---CCEeC---C-cccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 57789999 999999873 222 377777765 2 211 0 0111 123567899999988887765
Q ss_pred --CcEEEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec---CCeEEEEEcCCc--eE-EEEe
Q 007489 346 --RRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQ--RQ-HWFI 415 (601)
Q Consensus 346 --g~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~---dg~i~iwd~~~~--~~-~~~~ 415 (601)
..|+++++.+++. ...+... .......+.|||||++|+..+. ...|+++|+.++ +. ...+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 314 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEH----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV 314 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECC----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES
T ss_pred CCCEEEEEECCCCchhcEEEEecC----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe
Confidence 2588888876642 2233221 3345678899999999987653 346889999875 22 0223
Q ss_pred eccCCCceeEEEecCCCCCEEEEEeCC----CeEEEEEcCC
Q 007489 416 SRLEGASVTAAGFPPQNNNVLIITTSS----NQVYVFDVEA 452 (601)
Q Consensus 416 ~~~~~~~v~~l~~~p~~~~~l~~~~~d----g~v~vwd~~~ 452 (601)
.........++.|+. ++.+++....+ ..|..+++.+
T Consensus 315 ~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 315 RPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred ecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 222234556666665 44444454443 3677777764
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.17 E-value=0.0052 Score=58.19 Aligned_cols=122 Identities=9% Similarity=0.040 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-cEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEc
Q 007489 276 RKIICSTISNSGMLFAYSDHVK-PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDV 353 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~ 353 (601)
.....++++|.+..|..++.+. -+|+.+... +... ...........+.++++|++..|+.+.. .+.|..+++
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 4568889998766666543332 344444431 2211 0111222345689999997777766654 577999998
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEe
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 415 (601)
. +.....+... .......+++ ..+.++++-...+.|..++..+++....+
T Consensus 233 d-G~~~~~~~~~----------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 233 D-GSHRKAVISQ----------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp T-SCSCEEEECS----------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred C-CCceEEEEeC----------CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 6 3333333211 2345677887 34444445556777888885555443333
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00059 Score=66.74 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=41.8
Q ss_pred EEEEEEEee--CCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEee
Q 007489 39 CIWSLLSLR--CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 98 (601)
Q Consensus 39 ~V~~v~~s~--~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 98 (601)
....|+++| ++.|..++..+.|+.+|+..++... +.........|+|+++|++|+.+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~ 198 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITND 198 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEEC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeC
Confidence 457889997 3466666555889999998655433 3334556789999999997776654
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=0.0023 Score=67.75 Aligned_cols=165 Identities=10% Similarity=0.037 Sum_probs=78.9
Q ss_pred CCeEEEEEcCCCCEEEE-E-c--CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-C----C
Q 007489 276 RKIICSTISNSGMLFAY-S-D--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-D----R 346 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~-~-~--~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-d----g 346 (601)
.....+.+||||++|+. + . ...+.++++.... +.. .+. ...........++.|+. |+.|+..+. + .
T Consensus 271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~-~~~--~~~-~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~ 345 (751)
T 2xe4_A 271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN-AHN--TLE-IVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNH 345 (751)
T ss_dssp TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT-TCC--CEE-ESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTC
T ss_pred ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC-CCc--eeE-EeecCCCCceEEEeeee-CCEEEEEeCCCCCCCc
Confidence 34567889999999887 3 2 3345556655311 111 000 11222233344455443 555554443 3 2
Q ss_pred cEEEEEcCCCceeee-eccCcccccccCCCCCC--CeeEEEEccCCCEE-EEEecCCe--EEEEEc-------CCceEEE
Q 007489 347 RIYVVDVSSSELLHT-FTPCREEHDREIQPSEP--PITKMFTSSDGQWL-AAVNCFGD--VYIFNL-------EIQRQHW 413 (601)
Q Consensus 347 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~--~i~~l~~spd~~~l-as~~~dg~--i~iwd~-------~~~~~~~ 413 (601)
.|..+++.++..... +.. +.. .+..+.+ +++.| ++...++. |.++++ .+++...
T Consensus 346 ~L~~~d~~~~~~~~~~li~-----------~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~ 412 (751)
T 2xe4_A 346 KLLIAPRGQPSDWSHVLVD-----------HSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLR 412 (751)
T ss_dssp EEEEEETTSTTCCCCEEEC-----------CCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCE
T ss_pred EEEEEcCCCcccceeeEEC-----------CCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEecccccccccCCccce
Confidence 567777654222222 222 222 3444555 45554 55666775 555665 3444122
Q ss_pred EeeccCCCceeEEEe----cCCCCCEEEEEeCC---CeEEEEEcCCCCcccc
Q 007489 414 FISRLEGASVTAAGF----PPQNNNVLIITTSS---NQVYVFDVEAKQLGEW 458 (601)
Q Consensus 414 ~~~~~~~~~v~~l~~----~p~~~~~l~~~~~d---g~v~vwd~~~~~~~~~ 458 (601)
.+.......+..+.+ ++++..++++.+.. ..++.+|+.+++...+
T Consensus 413 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l 464 (751)
T 2xe4_A 413 EVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAV 464 (751)
T ss_dssp ECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEE
T ss_pred EECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 332111122334433 44233444444433 5788888887765443
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.15 E-value=0.00035 Score=61.11 Aligned_cols=186 Identities=9% Similarity=0.061 Sum_probs=114.6
Q ss_pred eeeccccCCCeEEEEEeC---CeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcC
Q 007489 221 LVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDH 295 (601)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~ 295 (601)
....+.|+++..+..++. +.++.+++.+.. .+.++..+....-..+++. +..|.. -.+
T Consensus 22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgk---------------v~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGR---------------ILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTSCEEEEEETTTCC---------------EEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred ccccEEEECCEEEEECCCCCCceEEEEECCCCC---------------EEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 444566776444444443 367777776544 4555555533333344443 444443 468
Q ss_pred CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCC
Q 007489 296 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 375 (601)
Q Consensus 296 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 375 (601)
+.+.+||..+ ...+ ....... ....+++|++.|+++..++.|.++|..+.+.+.++.......
T Consensus 85 ~~v~v~D~~t---l~~~---~ti~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~------ 147 (243)
T 3mbr_X 85 HEGFVYDLAT---LTPR---ARFRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR------ 147 (243)
T ss_dssp SEEEEEETTT---TEEE---EEEECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE------
T ss_pred CEEEEEECCc---CcEE---EEEeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc------
Confidence 8899999875 3332 1222222 123444678888888888999999999998888776521000
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc------------CCCceeEEEecCCCCCEEEEEeCC
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL------------EGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
.-..++.+.+. +|+..|..-.+..|.+.|..+++....+... ...-.+.++++| +++.|++.+.-
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK~ 224 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGKR 224 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEETT
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEECCC
Confidence 11345667765 6665555546779999999999987776522 123568999999 77777776643
No 279
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.13 E-value=0.011 Score=60.56 Aligned_cols=378 Identities=11% Similarity=-0.004 Sum_probs=196.3
Q ss_pred eEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhcc-ccccceEEEEEeCCCCEEEEEee--CCeEEEEEeccCcC
Q 007489 38 LCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESI 112 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~--dg~i~vw~~~~~~~ 112 (601)
.....|++.+.+ .| ++-...+.|.+.++. |.....+. ..-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 357789999855 44 455567899999987 44433332 33455789999997666665543 35666666655331
Q ss_pred CCCCCCCCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCC
Q 007489 113 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 192 (601)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 192 (601)
.......-.....+++. ++++ .+.++-...+
T Consensus 163 -----------------~~l~~~~~~~P~Glald---------~~~~-----------------------~LY~aD~~~~ 193 (619)
T 3s94_A 163 -----------------FIIINSEIYWPNGLTLD---------YEEQ-----------------------KLYWADAKLN 193 (619)
T ss_dssp -----------------EEEECSSCSSEEEEEEE---------TTTT-----------------------EEEEEETTTC
T ss_pred -----------------EEEEeCCCCCCcEEEEE---------ccCC-----------------------EEEEEeCCCC
Confidence 01111123345677776 5543 1444444556
Q ss_pred eEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcc--cCCC-C-----------
Q 007489 193 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE--SRSS-S----------- 258 (601)
Q Consensus 193 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~--~~~~-~----------- 258 (601)
.|..+++.......... . .......+++.++ .+.++..+.-.|+.++...+.. .... .
T Consensus 194 ~I~~~~~dG~~~~~~~~---~----~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~ 265 (619)
T 3s94_A 194 FIHKSNLDGTNRQAVVK---G----SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 265 (619)
T ss_dssp CEEEESSSCCEEC----------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCG
T ss_pred eEEEecCCCCccEEEEe---C----CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEcc
Confidence 78888776422111100 0 0111234445555 3333333333333333222111 0000 0
Q ss_pred --------CCC---CCcceEEEEEecCCCCeEEEEE-----cCC--------CCEEEEEcCCccEEEEeecCCCCcceEE
Q 007489 259 --------GGH---ASTSLLVQVKSKASRKIICSTI-----SNS--------GMLFAYSDHVKPSLFELKKGKVGQGEWI 314 (601)
Q Consensus 259 --------~~~---~~~~~~~~~~~~~~~~i~~~~~-----s~~--------g~~l~~~~~~~v~l~~~~~~~~~~~~~~ 314 (601)
... .....++... +......|.+- .+| ..+|+.+..+.|+..++...+.....
T Consensus 266 ~~qp~~~n~C~~~ng~Cs~lCl~~-~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~-- 342 (619)
T 3s94_A 266 QRQPNATNPCGIDNGGCSHLCLMS-PVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV-- 342 (619)
T ss_dssp GGSCCCCCTTTTTGGGCSSEEEEC-SSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEE--
T ss_pred ccCCCccccccCCCCcccceEECC-CCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeE--
Confidence 000 0001111111 10111222221 112 12455566667777776642111110
Q ss_pred EeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 315 INKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 315 ~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
..+. ....+..++|.+.+..|+.+. ..+.|+.+++........+.. .-.....+++.+.+..|+
T Consensus 343 ---~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~-----------~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 343 ---LQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA-----------QIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp ---CCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----------SCSCCCEEEEETTTTEEE
T ss_pred ---Eecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC-----------CCCCcCceEEecccCcEE
Confidence 1111 134567899998666665555 467899998864333222222 234577899987555555
Q ss_pred -EEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeC--CCeEEEEEcCCCCcccchhcccCCcCccc
Q 007489 394 -AVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS--SNQVYVFDVEAKQLGEWSMQHTFVLPRRY 470 (601)
Q Consensus 394 -s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 470 (601)
+-+..+.|.+.++++......+. ..-..+.++++.| ....|..+.. .+.|...+++......+ .
T Consensus 408 ~tD~~~~~I~v~~~~G~~~~~l~~-~~l~~P~~iavdp-~~G~ly~tD~g~~~~I~r~~~dG~~~~~l-----------~ 474 (619)
T 3s94_A 408 WTDTGTDRIEVTRLNGTMRKILIS-EDLEEPRAIVLDP-MVGYMYWTDWGEIPKIERAALDGSDRVVL-----------V 474 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEC-TTCCSEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEE-----------E
T ss_pred EEeCCCCcEEEEeCCCCeEEEEEE-CCCCCeeeEEEEc-CCCcEEEecCCCCCEEEEEccCCCccEEE-----------E
Confidence 44567899999998765433332 2225789999999 6556666653 36777777775442111 1
Q ss_pred ccCCCcEEEEEeCCCCCCCEEEEEc--CceEEEEeCCC
Q 007489 471 QEFPGEVIGLSFSPSPSSSSVIIYS--ARAMCVIDFGR 506 (601)
Q Consensus 471 ~~~~~~v~~i~~~p~~~~~~~~~~~--~~~~~~~~~~~ 506 (601)
...-....+|+++++ .++|++-+ ...+..++++.
T Consensus 475 ~~~l~~P~GlalD~~--~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 475 NTSLGWPNGLALDYD--EGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp CSSCSCEEEEEEETT--TTEEEEEETTTTEEEEEESSS
T ss_pred eCCCCCCeeeEEccc--CCEEEEEECCCCEEEEEecCC
Confidence 122357889999987 55665553 34577777654
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.13 E-value=0.0028 Score=61.04 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-cEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEc
Q 007489 276 RKIICSTISNSGMLFAYSDHVK-PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDV 353 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~ 353 (601)
.....+++.|.+..|..++.+. -+|+.+... +.....+ ........+.|+++|++..|+.+.. .+.|..+|+
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~----~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRII----ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEE----ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEE----EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 4578889998776666643333 444444431 2211111 1122334589999987777766654 577999997
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
.. .....+... .......|++ ..+.++++-...+.|..++..+++....+.
T Consensus 276 dG-~~~~~~~~~----------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 276 DG-SHRKAVISQ----------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TS-CSCEEEECS----------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CeeEEEEEC----------CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 63 333333221 2345677888 344445555567888888865555444443
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.13 E-value=0.0017 Score=62.57 Aligned_cols=94 Identities=9% Similarity=-0.076 Sum_probs=58.8
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhccccccceEEEE
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 85 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~ 85 (601)
...|+..++..+.....+. .......++|.+.+ .| ++-...+.|..+++..+.....+.........++
T Consensus 95 ~~~I~~i~~~~~~~~~~~~---------~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLN---------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp BSCEEEECTTSCCCEEEEC---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred CccceeeccCCCcEEEEec---------CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 3568888876555433332 23347899999754 54 4555678899999885543332332234557789
Q ss_pred EeCCCCEEE-EEeeCCeEEEEEeccC
Q 007489 86 AAPSHNRVF-STGSDGQVILYKASCE 110 (601)
Q Consensus 86 ~s~~~~~l~-s~~~dg~i~vw~~~~~ 110 (601)
+.+.+..|+ +-...+.|.+.+++..
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 988655554 5555677888777654
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.13 E-value=0.0055 Score=57.11 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=60.0
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCc---cchhhh-ccccccce
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRH---GTLLQA-HSFHKGDV 81 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~---~~~~~~-~~~h~~~V 81 (601)
...|+..|+.+.+....+. .......++|.+++ .| ++-...+.|..+++.. +..... +...-...
T Consensus 9 ~~~I~~i~~~~~~~~~~~~---------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred CCeEEEEECCCcceEehhc---------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3579999998776655443 33457889999865 54 4555678999999875 122222 22222456
Q ss_pred EEEEEeCCCCEEE-EEeeCCeEEEEEeccC
Q 007489 82 NALAAAPSHNRVF-STGSDGQVILYKASCE 110 (601)
Q Consensus 82 ~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~ 110 (601)
..+++.+.+..|+ +-...+.|.++++...
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 7899987555554 5566788999987754
No 283
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.08 E-value=0.0052 Score=58.20 Aligned_cols=95 Identities=8% Similarity=-0.086 Sum_probs=59.0
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eE-EEEcCCCcEEEeeCCccchhhhccccccceEEEE
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 85 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~ 85 (601)
...|+..++...... .+. .....+..++|.+.+ .| ++-...+.|..+++..+.....+.........++
T Consensus 52 ~~~I~~i~~~g~~~~-~~~--------~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 122 (349)
T 3v64_C 52 RIDIRQVLPHRSEYT-LLL--------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122 (349)
T ss_dssp BSCEEEECTTSCCEE-EEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred ccceEEEeCCCCeeE-Eee--------cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEE
Confidence 345777777544333 332 123347899999655 54 4545678899999885543332332234567899
Q ss_pred EeCCCCEE-EEEeeCCeEEEEEeccCc
Q 007489 86 AAPSHNRV-FSTGSDGQVILYKASCES 111 (601)
Q Consensus 86 ~s~~~~~l-~s~~~dg~i~vw~~~~~~ 111 (601)
+.+.+..| ++-...+.|.+.+++...
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence 99865555 455567889998887643
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.02 E-value=0.012 Score=56.79 Aligned_cols=95 Identities=12% Similarity=-0.052 Sum_probs=58.9
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEE-EEcCCCcEEEeeCCccc----hhhhccccccce
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGSVQFWDSRHGT----LLQAHSFHKGDV 81 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~-s~~~dg~i~vwd~~~~~----~~~~~~~h~~~V 81 (601)
...|+..++........+ .....+..|+|.+.+ .|. +-...+.|+.+++.... ....+.......
T Consensus 91 ~~~I~~i~l~~~~~~~~~---------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp TTEEEEECTTSCSCEEEE---------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEEccCCcceeEec---------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 457888888765544433 244568899999855 554 44567889999887421 222222234567
Q ss_pred EEEEEeCCCCEEE-EEeeCCeEEEEEeccCc
Q 007489 82 NALAAAPSHNRVF-STGSDGQVILYKASCES 111 (601)
Q Consensus 82 ~~l~~s~~~~~l~-s~~~dg~i~vw~~~~~~ 111 (601)
..|++.+.+..|+ +-...+.|.+.++++..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~ 192 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 192 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCc
Confidence 8899998555444 55567888888877643
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.01 E-value=0.0047 Score=57.51 Aligned_cols=194 Identities=9% Similarity=0.001 Sum_probs=115.4
Q ss_pred CCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEE-EEecCCcEEEEE
Q 007489 276 RKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI-IAGHDRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~-~~~~dg~i~vwd 352 (601)
..+.+++|++.+..|..+ ..+.|..+++.. .......+. ........+++.+.+..|+ +-...+.|.+++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g--~~~~~~~~~-----~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~ 107 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--TESVQNVVV-----SGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 107 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTS--SSCCCEEEE-----ECCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccC--CCceEEEEc-----CCCCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence 457788999866555553 455666666543 111111011 1122456788887555554 444567899999
Q ss_pred cCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec--CCeEEEEEcCCceEEEEeeccCCCceeEEEecC
Q 007489 353 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 430 (601)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p 430 (601)
+. +.....+... .......+++.|.+.+|+.++. .+.|..++++.......+.. .-.....|+|+|
T Consensus 108 ~d-G~~~~~l~~~----------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~ 175 (318)
T 3sov_A 108 LD-GSLRKVLFWQ----------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-EIYWPNGLTLDY 175 (318)
T ss_dssp TT-SCSCEEEECS----------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEET
T ss_pred CC-CCcEEEEEeC----------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC-CCCCccEEEEec
Confidence 86 3333333211 3456789999998777776663 57899999876544323222 224678999999
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--cCceEEEEeC
Q 007489 431 QNNNVLIITT-SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDF 504 (601)
Q Consensus 431 ~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~~~ 504 (601)
++..|..+. ..+.|..+|++......+ ..+......++++..+ .++.- ....+..++.
T Consensus 176 -~~~~lY~aD~~~~~I~~~d~dG~~~~~~-----------~~~~~~~P~glav~~~----~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 176 -EEQKLYWADAKLNFIHKSNLDGTNRQAV-----------VKGSLPHPFALTLFED----ILYWTDWSTHSILACNK 236 (318)
T ss_dssp -TTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSCCSCEEEEEEETT----EEEEEETTTTEEEEEET
T ss_pred -cCCEEEEEECCCCEEEEEcCCCCceEEE-----------ecCCCCCceEEEEeCC----EEEEEecCCCeEEEEEC
Confidence 777777765 467899999986442211 1112345677777533 33322 4566777776
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.0036 Score=61.17 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=90.9
Q ss_pred CCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEE
Q 007489 276 RKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVD 352 (601)
Q Consensus 276 ~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd 352 (601)
.....++++| +|.++++ ..++.|+.++... +.....+.. . .....-..++|+|++++|+++. ..+.|+.++
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~--~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~ 301 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT---GTLTEEEVM--M-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD 301 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTT---CCEEEEEEE--C-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCC---CeEEEEEec--c-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 3456677888 6665555 3455566665542 222111111 1 1112234799999999666555 467899988
Q ss_pred cC--CCce--eeeeccCccc---ccc-cCCCCCCCeeEEEE---------ccCCCEEEEEecCCeEEEEEcCCceEEEEe
Q 007489 353 VS--SSEL--LHTFTPCREE---HDR-EIQPSEPPITKMFT---------SSDGQWLAAVNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 353 ~~--~~~~--~~~~~~~~~~---~~~-~~~~~~~~i~~l~~---------spd~~~las~~~dg~i~iwd~~~~~~~~~~ 415 (601)
.. ++.. ...+.+.... .+. .....-.....+++ .++|.++++-..+++|+.++. .+......
T Consensus 302 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~ 380 (433)
T 4hw6_A 302 YNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYA 380 (433)
T ss_dssp BCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEE
T ss_pred CCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEE
Confidence 65 2321 1222221000 000 00001234677999 777777777677889999986 34433222
Q ss_pred ecc--------C--------CCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 416 SRL--------E--------GASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 416 ~~~--------~--------~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
... . -..+..|++.|.++.++++=...+.|+.++++
T Consensus 381 G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 381 GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 110 0 02477899994155544444556788888765
No 287
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.88 E-value=0.041 Score=58.42 Aligned_cols=371 Identities=10% Similarity=0.047 Sum_probs=183.1
Q ss_pred eEEEEEEEeeCC-eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCC
Q 007489 38 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 116 (601)
Q Consensus 38 ~~V~~v~~s~~g-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 116 (601)
..|.++...+++ .|-.|.. +-+..+|..+++...........|.++....+|.+.+. +. +-+.+++..+...
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~---- 263 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPL---- 263 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCC----
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcE----
Confidence 348888877765 5555554 45788888765432211112356888888877776554 43 4577777665432
Q ss_pred CCCCccccceeEEecC-----ccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCC
Q 007489 117 GLSSSEVIKKWIYVGS-----VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 191 (601)
Q Consensus 117 ~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 191 (601)
..... .......|.++... .+| .|..|...
T Consensus 264 -----------~~~~~~~~~~~~l~~~~i~~i~~D---------~~g-------------------------~lWiGT~~ 298 (758)
T 3ott_A 264 -----------QHIIHDSRNIQSLTNNIIWNIFAD---------QEH-------------------------NIWLGTDY 298 (758)
T ss_dssp -----------EEECCCTTCTTSCSCSCEEEEEEC---------TTC-------------------------CEEEEESS
T ss_pred -----------EEEEcCCCCcCcCCcCeEEEEEEc---------CCC-------------------------CEEEEeCC
Confidence 00000 01123457777643 333 34455555
Q ss_pred CeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEE
Q 007489 192 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 271 (601)
Q Consensus 192 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (601)
| +.++.... .+................+.++....+|.+.+...+.+..++....... ....+.
T Consensus 299 G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~~~~~~~~~~~-------------~~~~~~ 362 (758)
T 3ott_A 299 G-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLIRFTDPAGERH-------------DAIWYR 362 (758)
T ss_dssp S-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEEEESCTTSSCC-------------CCEEEC
T ss_pred c-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcceeecccccccc-------------eeEEec
Confidence 6 43333211 1100000000000011245556566666655554444444432211100 000010
Q ss_pred e------cCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCc--CccceeEEEEccCCCeEEEEe
Q 007489 272 S------KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR--KLQFAHSMIFSYDSSQLIIAG 343 (601)
Q Consensus 272 ~------~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~s~d~~~l~~~~ 343 (601)
. -....|.++.-..+|++.+.. ++-+..|+... + ............ ....|.++...+++. |.+|+
T Consensus 363 ~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~---~-~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT 436 (758)
T 3ott_A 363 MGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT---R-QFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWIST 436 (758)
T ss_dssp TTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTT---T-EEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEE
T ss_pred cCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCC---C-cEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEE
Confidence 0 012458888888888766554 45677776643 1 111111111111 234578888777764 55577
Q ss_pred cCCcEEEEEcCCC-----cee---eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEe
Q 007489 344 HDRRIYVVDVSSS-----ELL---HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 344 ~dg~i~vwd~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 415 (601)
..+-+.++|..+. ... ..+.... .+ ....|.++...++|++.+.++..+-|..+|..+++.....
T Consensus 437 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l--~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~ 509 (758)
T 3ott_A 437 CLGGIFVVDKHKLMQSTSGQYIAEQNYSVHN-----GL--SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLF 509 (758)
T ss_dssp SSSCEEEEEHHHHHHCCSSEEECSEEECGGG-----TC--SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEEC
T ss_pred CCCceEEEccccccccCCcceeccccccccc-----cc--ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEec
Confidence 6666888985421 111 1111100 00 2346899999999987663333344888999877654321
Q ss_pred ec-cC-CCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEE
Q 007489 416 SR-LE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVII 493 (601)
Q Consensus 416 ~~-~~-~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~ 493 (601)
.. .. ...+.++.... ++.+. .|+.. -|..|+..+++...... ..++ ...|.++... .+.+|+
T Consensus 510 ~~~~~~~~~~~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~~~~~---~gl~------~~~i~~i~~~----~g~lWi 573 (758)
T 3ott_A 510 ADELTGEKSPNYLLCDE-DGLLW-VGFHG-GVMRINPKDESQQSISF---GSFS------NNEILSMTCV----KNSIWV 573 (758)
T ss_dssp TTTSCGGGCEEEEEECT-TSCEE-EEETT-EEEEECC--CCCCBCCC---CC---------CCEEEEEEE----TTEEEE
T ss_pred CCCcCCCcccceEEECC-CCCEE-EEecC-ceEEEecCCCceEEecc---cCCC------ccceEEEEEC----CCCEEE
Confidence 11 11 13577887776 67655 45554 48889987765433210 0011 1335555432 235666
Q ss_pred EcCceEEEEeCC
Q 007489 494 YSARAMCVIDFG 505 (601)
Q Consensus 494 ~~~~~~~~~~~~ 505 (601)
.+.++++.++..
T Consensus 574 ~t~~Gl~~~~~~ 585 (758)
T 3ott_A 574 STTNGLWIIDRK 585 (758)
T ss_dssp EESSCEEEEETT
T ss_pred ECCCCeEEEcCC
Confidence 655666666543
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.87 E-value=0.017 Score=53.76 Aligned_cols=201 Identities=8% Similarity=-0.034 Sum_probs=116.7
Q ss_pred CCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEE-ecCCcEEE
Q 007489 274 ASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYV 350 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~-~~dg~i~v 350 (601)
....+..++|++.+..|..+ ..+.|..+++.....+...- ..+.........+++.+.+..|+.+ ...+.|.+
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~----~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~ 103 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD----TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 103 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE----EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence 34678899999877665553 45667666665310001110 1111222345788998755555444 55788999
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC--CeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF--GDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
+++.. +....+... .......++++|.+.+|+.++.. +.|..++++......... ..-.....|++
T Consensus 104 ~~~~g-~~~~~~~~~----------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gla~ 171 (316)
T 1ijq_A 104 ADTKG-VKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITL 171 (316)
T ss_dssp EETTS-SSEEEEEEC----------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEE
T ss_pred EeCCC-CceEEEEEC----------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE-CCCCCceEEEE
Confidence 99864 333333211 23467899999977766665543 689999887654432222 22346889999
Q ss_pred cCCCCCEEEEEe-CCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE--cCceEEEEeC
Q 007489 429 PPQNNNVLIITT-SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDF 504 (601)
Q Consensus 429 ~p~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~--~~~~~~~~~~ 504 (601)
+| ++..|..+. ..+.|..+|++......+. ..........++++.. +.+++- ....+.+++.
T Consensus 172 d~-~~~~lY~~D~~~~~I~~~d~dg~~~~~~~---------~~~~~~~~P~giav~~----~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 172 DL-LSGRLYWVDSKLHSISSIDVNGGNRKTIL---------EDEKRLAHPFSLAVFE----DKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ET-TTTEEEEEETTTTEEEEEETTSCSCEEEE---------ECTTTTSSEEEEEEET----TEEEEEETTTTEEEEEET
T ss_pred ec-cCCEEEEEECCCCeEEEEecCCCceEEEe---------ecCCccCCcEEEEEEC----CEEEEEECCCCeEEEEeC
Confidence 99 777776665 4579999999864432210 0001123567788742 244433 4456777765
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.019 Score=53.77 Aligned_cols=187 Identities=9% Similarity=0.117 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCCc
Q 007489 278 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 357 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~ 357 (601)
+..+.+.+++..++++.++. +|.... .+ ..|+.... .....+..+++.+++.+++++. +|.+..-+-..++
T Consensus 124 ~~~i~~~~~~~~~~~~~~g~--v~~S~D--gG-~tW~~~~~---~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~ 194 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITNVGA--IYRTKD--SG-KNWQALVQ---EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQT 194 (327)
T ss_dssp EEEEEEEETTEEEEEETTCC--EEEESS--TT-SSEEEEEC---SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCS
T ss_pred eEEEEEECCCCEEEEeCCcc--EEEEcC--CC-CCCEEeec---CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCC
Confidence 44555556666666665553 444332 23 34654432 2234678999999988777664 4544433211122
Q ss_pred eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeecc---CCCceeEEEecCCCCC
Q 007489 358 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL---EGASVTAAGFPPQNNN 434 (601)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~~p~~~~ 434 (601)
.-..+... ....+..+++++++++++. +.+|.+++.+.+.++....+... ....+.++.+.+ ++.
T Consensus 195 tW~~~~~~----------~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~ 262 (327)
T 2xbg_A 195 AWEPHNRT----------TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNE 262 (327)
T ss_dssp SCEEEECC----------SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSC
T ss_pred ceeECCCC----------CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCE
Confidence 21222111 4557889999999886654 46788877654545443223221 223588999998 776
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEEcCce
Q 007489 435 VLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 498 (601)
Q Consensus 435 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~ 498 (601)
++++ +.++.| .+..+.++ .|..... .......+.++.|.++ +.+++.+.++
T Consensus 263 ~~~~-g~~g~i-~~S~DgG~--tW~~~~~------~~~~~~~~~~v~~~~~---~~~~~~G~~G 313 (327)
T 2xbg_A 263 VWLA-GGAGAL-LCSQDGGQ--TWQQDVD------VKKVPSNFYKILFFSP---DQGFILGQKG 313 (327)
T ss_dssp EEEE-ESTTCE-EEESSTTS--SCEECGG------GTTSSSCCCEEEEEET---TEEEEECSTT
T ss_pred EEEE-eCCCeE-EEeCCCCc--ccEEcCc------cCCCCCCeEEEEEECC---CceEEEcCCc
Confidence 5555 457766 45556553 3432221 0112345677888643 4566665543
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.064 Score=59.13 Aligned_cols=167 Identities=7% Similarity=0.095 Sum_probs=100.7
Q ss_pred ceEEEEEecCCCCeEEEEE---cCC-CCEEEEEc-----------CCccEEEEeecCCCCcceEEEeeecCCcCccceeE
Q 007489 265 SLLVQVKSKASRKIICSTI---SNS-GMLFAYSD-----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHS 329 (601)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~---s~~-g~~l~~~~-----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (601)
+.+..+.......+.|++. ..+ ..++++|. .|.|.+|++.. .++-.+.+... .+.+++
T Consensus 818 ~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~----~kL~lv~~~~v---~g~v~a 890 (1158)
T 3ei3_A 818 EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD----GKLQTVAEKEV---KGAVYS 890 (1158)
T ss_dssp CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET----TEEEEEEEEEE---SSCEEE
T ss_pred eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC----CEEEEEEEEEc---CCcCEE
Confidence 3444555555566666654 222 46777642 36688998872 23222333333 346777
Q ss_pred EEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEc--C
Q 007489 330 MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL--E 407 (601)
Q Consensus 330 i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~--~ 407 (601)
++-- +| +|++|- ..+|++|++...+.++ .... +-..|..+.....+++++.|+.-..|.++.. .
T Consensus 891 l~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~----------~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 891 MVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECN----------HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp EEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEE----------ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred Eeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEee----------ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence 7533 45 555443 5789999997655443 1110 1112333333336789999998887777654 4
Q ss_pred CceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCC
Q 007489 408 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 454 (601)
Q Consensus 408 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 454 (601)
..+....-.......++++.|-. ...++.+..+|.|.++......
T Consensus 957 ~~~L~~~a~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 957 EGNFEEIARDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp TTEEEEEEECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTTC
T ss_pred CCeEEEEEeecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCCC
Confidence 55554333444557899999974 4578889999999999887643
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.83 E-value=0.026 Score=54.51 Aligned_cols=123 Identities=10% Similarity=-0.003 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCCEEEEEc---CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEE
Q 007489 276 RKIICSTISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVV 351 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vw 351 (601)
.....+++.|.+..|..++ .+.|...+++. .... .+ ..........|++++++..|+.+.. .+.|..+
T Consensus 202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG---~~~~-~~----~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIY-SL----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS---CSCE-EE----ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC---CccE-EE----EECCCCceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence 4578899998766655543 34555555542 2111 11 1122345689999998888777654 5789999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
|+. +.....+..... .-.....+++. .+.++.+-...+.|..+|..+++....+.
T Consensus 274 d~d-G~~~~~~~~~~~--------~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 274 DVN-GGNRKTILEDEK--------RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp ETT-SCCCEEEEECSS--------TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred eCC-CCccEEEEeCCC--------CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 986 333333322100 22345567772 33344455566788888876665544443
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.78 E-value=0.0069 Score=56.75 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCEEEEE-------------cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc--CCC-eEEE
Q 007489 278 IICSTISNSGMLFAYS-------------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--DSS-QLII 341 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~-------------~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--d~~-~l~~ 341 (601)
.-.+++.|+|..++++ .+|.|.++|+.........+.+.........-....|.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4456677877666665 57778888876421222221111100111223446666655 454 4555
Q ss_pred Eec---CCcEEEEEcCCCc----eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-----------------
Q 007489 342 AGH---DRRIYVVDVSSSE----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----------------- 397 (601)
Q Consensus 342 ~~~---dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~----------------- 397 (601)
+.. +.+|.+|++.... .+.++.+. .-...+.+++.++|.+.++...
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~----------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK----------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCT----------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccC----------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 433 4578888775432 33344432 3456889999999998887651
Q ss_pred CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe-CCCeEEEEEcCC-CCcccchhcccCCcCcccccCCC
Q 007489 398 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEA-KQLGEWSMQHTFVLPRRYQEFPG 475 (601)
Q Consensus 398 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 475 (601)
.|.|+-++. ++.......+ ...+.++|+| |++.|+++. ..+.|+.|++.. +.+.. .+.+ ...+
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l--~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~---------~~~~-~~~g 266 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGF--DFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTP---------LRVL-SFDT 266 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEE--SSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEE---------EEEE-ECSS
T ss_pred ccEEEEEEC--CeEEEeecCC--cccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEec---------CEEE-eCCC
Confidence 244555554 4433333333 3678999999 998887775 568999999974 33321 1122 2246
Q ss_pred cEEEEEeCCCCCCCEEEE
Q 007489 476 EVIGLSFSPSPSSSSVII 493 (601)
Q Consensus 476 ~v~~i~~~p~~~~~~~~~ 493 (601)
...+++++++ ++.+|+
T Consensus 267 ~PDGi~vD~e--~G~lwv 282 (355)
T 3sre_A 267 LVDNISVDPV--TGDLWV 282 (355)
T ss_dssp EEEEEEECTT--TCCEEE
T ss_pred CCceEEEeCC--CCcEEE
Confidence 7888998873 245666
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.76 E-value=0.026 Score=52.44 Aligned_cols=97 Identities=14% Similarity=0.009 Sum_probs=60.0
Q ss_pred CCcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeC-CeE-EEEcCCCcEEEeeCCccchhh-hccccccceEEE
Q 007489 8 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-GTL-VSADSTGSVQFWDSRHGTLLQ-AHSFHKGDVNAL 84 (601)
Q Consensus 8 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~l-~s~~~dg~i~vwd~~~~~~~~-~~~~h~~~V~~l 84 (601)
...|+..|+........+.. .....+.+|+|.+. +.| .+-...+.|..+++..+.... .+...-.....+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV-------GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE-------EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred cCeEEEEECCCCceEEEEEe-------cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 45799999876531112211 12345778999985 444 555567889999987553222 222223456789
Q ss_pred EEeCCCCEE-EEEeeCCeEEEEEeccCc
Q 007489 85 AAAPSHNRV-FSTGSDGQVILYKASCES 111 (601)
Q Consensus 85 ~~s~~~~~l-~s~~~dg~i~vw~~~~~~ 111 (601)
++.+.+..| ++-...+.|.+++++...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 999755544 455567889999887643
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.76 E-value=0.0021 Score=58.82 Aligned_cols=168 Identities=13% Similarity=0.233 Sum_probs=110.2
Q ss_pred eEEEEccCCCeEEEEe-cCCcEEEEEcCCCceeee-eccCcccccccCCCCCCCeeEEEE---ccCCCEEEEEec-----
Q 007489 328 HSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHT-FTPCREEHDREIQPSEPPITKMFT---SSDGQWLAAVNC----- 397 (601)
Q Consensus 328 ~~i~~s~d~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~---spd~~~las~~~----- 397 (601)
.++.|.+....|..++ ..++|..|+...+..... +..... . ......+..|.| .|+++++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~--~---g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASS--N---GDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCC--S---SCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccc--c---CCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 5778988666666666 689999999875543333 221000 0 001224689999 688888876542
Q ss_pred --------CCeEEEEEcC---CceEEEEeec--cC----------CCceeEEEecCCCCCEEEEEeCC-CeEEEEEcCCC
Q 007489 398 --------FGDVYIFNLE---IQRQHWFISR--LE----------GASVTAAGFPPQNNNVLIITTSS-NQVYVFDVEAK 453 (601)
Q Consensus 398 --------dg~i~iwd~~---~~~~~~~~~~--~~----------~~~v~~l~~~p~~~~~l~~~~~d-g~v~vwd~~~~ 453 (601)
+..|..||+. +++..+.... .. -.....|+..+ +|+..++.+.- +.|...+.+..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC
Confidence 6789999999 7776554431 10 12478999999 99999988888 88888887766
Q ss_pred CcccchhcccCCcCcccccCCCcEEEEEeCCCCCCCEEEEE-cCceEEEEeCCCCCC
Q 007489 454 QLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDFGRPVD 509 (601)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~ 509 (601)
....|-...+ .........+|+++|+ ++.+++. +...+..||+..|..
T Consensus 170 ~~~~~~~~~~------~~~~~~G~nGIv~~pd--g~~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 170 TVSTFAWESG------NGGQRPGYSGITFDPH--SNKLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp CEEEEEECCC------CSSSCCSCSEEEEETT--TTEEEEESSSSSEEEEECSSSSC
T ss_pred EEeeeeecCC------CcccccCcceEEEeCC--CCEEEEEcCCCeEEEEcCCCCcc
Confidence 5555521111 1112235779999998 6677776 555699999886543
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.027 Score=55.25 Aligned_cols=132 Identities=5% Similarity=-0.014 Sum_probs=71.1
Q ss_pred CCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcce---EEEeee-cCCc---------Ccccee-EEEEc------
Q 007489 276 RKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGE---WIINKR-QLPR---------KLQFAH-SMIFS------ 333 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~---~~~~~~-~~~~---------~~~~v~-~i~~s------ 333 (601)
.....++++|+|+.|.++ ..+.|+.++.+. ....+ ..+... ...+ ...... .++..
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg--~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~ 387 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE--IKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG 387 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEET--TTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEecCC--CcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence 446789999999965554 555666655553 11110 001110 0011 111223 44444
Q ss_pred -cCCCeEEEEecCCcEEEEEcCCCceeeeeccCccc-----------ccc--cCCCCCCCeeEEEEccC-CCEEEEEecC
Q 007489 334 -YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE-----------HDR--EIQPSEPPITKMFTSSD-GQWLAAVNCF 398 (601)
Q Consensus 334 -~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~i~~l~~spd-~~~las~~~d 398 (601)
+++.++++-..+..|+.++ .++. +.++.+.... .+. .....-.....|+++++ |.++++=..+
T Consensus 388 ~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N 465 (496)
T 3kya_A 388 EEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465 (496)
T ss_dssp SCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred cCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence 4565566556678899998 4563 4455442110 000 01112245788999997 6666665677
Q ss_pred CeEEEEEcCCceE
Q 007489 399 GDVYIFNLEIQRQ 411 (601)
Q Consensus 399 g~i~iwd~~~~~~ 411 (601)
.+|+.++++....
T Consensus 466 ~rIrki~~~~~~~ 478 (496)
T 3kya_A 466 HTIRTISMEQEEN 478 (496)
T ss_dssp TEEEEEEECCCC-
T ss_pred CEEEEEECCCCcc
Confidence 8899999877654
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.00072 Score=66.15 Aligned_cols=154 Identities=12% Similarity=0.173 Sum_probs=94.1
Q ss_pred CCeEEEEEcC-CC-CEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecC-C----cE
Q 007489 276 RKIICSTISN-SG-MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-R----RI 348 (601)
Q Consensus 276 ~~i~~~~~s~-~g-~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~d-g----~i 348 (601)
.....++++| ++ .++++...+.|+.+++.. ..+-.+. ........++|++++++|+++... + .+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~----~~v~~~~-----~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK----EYVSTVY-----SGLSKVRTICWTHEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTT----TEEEEEE-----CCCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCC----CEEEEEe-----cCCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence 4567889997 34 444443336666666643 2221111 123456899999999977766652 2 24
Q ss_pred EEEEcCCCcee--eeeccCcccccccCCCCCCCeeEEEEcc-CCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeE
Q 007489 349 YVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 425 (601)
Q Consensus 349 ~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 425 (601)
.+++. .+... ..+.. ......++++| ++.++++-..++.|..|+.+++................
T Consensus 208 ~~~~~-~g~~~~~~~l~~------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 208 YILTR-ESGFKVITELTK------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp EEEEG-GGTSCSEEEEEE------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred EEEeC-CCceeeeeeecc------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence 44443 33322 22221 22356789999 67666666678899999998776532222222245789
Q ss_pred EEecCCCCCEEEEE-eCCCeEEEEEcCC
Q 007489 426 AGFPPQNNNVLIIT-TSSNQVYVFDVEA 452 (601)
Q Consensus 426 l~~~p~~~~~l~~~-~~dg~v~vwd~~~ 452 (601)
++|+| ++++|+++ ...+.|..++.+.
T Consensus 275 ia~~p-dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHP-SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence 99999 99865555 4578999988764
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.69 E-value=0.038 Score=52.26 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=48.3
Q ss_pred ceEEEEEEEeeCCeEEEEcCCCcEEEeeCCccc-hhhhc---cccccceEEEEEeCC---CCEEEEEee----C----Ce
Q 007489 37 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT-LLQAH---SFHKGDVNALAAAPS---HNRVFSTGS----D----GQ 101 (601)
Q Consensus 37 ~~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~-~~~~~---~~h~~~V~~l~~s~~---~~~l~s~~~----d----g~ 101 (601)
-..-+.|+|.|+|.|+.+..+|.|+++|. +++ .+..+ .........|+++|+ +..|+.+.. + ..
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34578999999997766777799999984 454 22211 112356789999997 556655433 3 56
Q ss_pred EEEEEeccC
Q 007489 102 VILYKASCE 110 (601)
Q Consensus 102 i~vw~~~~~ 110 (601)
|..|+....
T Consensus 107 v~r~~~~~~ 115 (354)
T 3a9g_A 107 VIRGRLDGS 115 (354)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 777776653
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.63 E-value=0.032 Score=52.73 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=46.9
Q ss_pred eEEEEEEEeeCCeEEEEcCCCcEEEeeCCccch--hhhc---cccccceEEEEEeCC---CCEEEEEeeC------CeEE
Q 007489 38 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL--LQAH---SFHKGDVNALAAAPS---HNRVFSTGSD------GQVI 103 (601)
Q Consensus 38 ~~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~--~~~~---~~h~~~V~~l~~s~~---~~~l~s~~~d------g~i~ 103 (601)
..-+.|+|.|+|.|+.+..+|.|.+++ +++. +..+ .........|+|+|+ +..|+.+... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346799999999666666779999998 3432 1111 122456789999998 6666655432 5677
Q ss_pred EEEecc
Q 007489 104 LYKASC 109 (601)
Q Consensus 104 vw~~~~ 109 (601)
.|+...
T Consensus 109 r~~~~~ 114 (352)
T 2ism_A 109 RLRHLG 114 (352)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 777764
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.63 E-value=0.095 Score=55.17 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=68.2
Q ss_pred CCeEEEEEcCCCCEEEEEcC---CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEE
Q 007489 276 RKIICSTISNSGMLFAYSDH---VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVV 351 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~---~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vw 351 (601)
.....+++.|.+..|..++. +.|...+++ +.....+ ..........|++++.+.+|+.+.. .+.|..+
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d----G~~~~~l----v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~ 585 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN----GVDIYSL----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 585 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT----SCCEEEE----ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEecCCCCEEEecCCCCCeEEEEecC----CCceEEE----EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEE
Confidence 45788999997666655432 445555443 2221111 1222346689999987777776654 5679999
Q ss_pred EcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceEEEEe
Q 007489 352 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHWFI 415 (601)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~ 415 (601)
++. |.....+..... .-.....|++ ++.+|+..+ ..+.|...|..+++....+
T Consensus 586 d~d-G~~~~~v~~~~~--------~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 586 DVN-GGNRKTILEDEK--------RLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp ETT-SCSCEEEEECTT--------TTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred ecC-CCceEEEecCCC--------ccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 986 443333322100 1223456666 344555554 5677888887666544444
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.57 E-value=0.11 Score=54.63 Aligned_cols=165 Identities=8% Similarity=-0.015 Sum_probs=103.3
Q ss_pred CCCCeEEEEEcCCCCEEEEE--cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEE
Q 007489 274 ASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYV 350 (601)
Q Consensus 274 ~~~~i~~~~~s~~g~~l~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~v 350 (601)
....+..+++++....|..+ ..+.|+.+++......... ...+.........|++.+.++.|+.+. ..+.|.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~----~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v 497 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 497 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C----EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce----eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEE
Confidence 34678899999866555553 4456666666531000011 011222234557899988776655554 5688999
Q ss_pred EEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec--CCeEEEEEcCCceEEEEeeccCCCceeEEEe
Q 007489 351 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGF 428 (601)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 428 (601)
.++. +....++... .......|++.|.+.+|+..+. .+.|.+.++++......+. ..-..+..|++
T Consensus 498 ~~ld-G~~~~~l~~~----------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLav 565 (791)
T 3m0c_C 498 ADTK-GVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITL 565 (791)
T ss_dssp EETT-SSSEEEEEEC----------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEE
T ss_pred EeCC-CCeEEEEEeC----------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEE
Confidence 9987 4433333321 3345889999998777776653 3689999998766544433 22257899999
Q ss_pred cCCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 007489 429 PPQNNNVLIITT-SSNQVYVFDVEAKQL 455 (601)
Q Consensus 429 ~p~~~~~l~~~~-~dg~v~vwd~~~~~~ 455 (601)
.+ ....|+.+. ..+.|..++++....
T Consensus 566 D~-~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 566 DL-LSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp ET-TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ec-CCCeEEEEeCCCCcEEEEecCCCce
Confidence 98 666777765 457899999976543
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.56 E-value=0.05 Score=51.40 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=45.9
Q ss_pred EEEEEEEeeCCe-EEEEcCCCcEEEeeCCccch---hhhc----cccccceEEEEEeCC---CCEEEEEe-e-------C
Q 007489 39 CIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTL---LQAH----SFHKGDVNALAAAPS---HNRVFSTG-S-------D 99 (601)
Q Consensus 39 ~V~~v~~s~~g~-l~s~~~dg~i~vwd~~~~~~---~~~~----~~h~~~V~~l~~s~~---~~~l~s~~-~-------d 99 (601)
.-+.|+|.|+|. |+.+...|.|++++.. +.. +..+ .........|+|+|+ +..|+.+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999996 8888888999999864 432 1211 112346789999996 55555443 2 2
Q ss_pred CeEEEEEecc
Q 007489 100 GQVILYKASC 109 (601)
Q Consensus 100 g~i~vw~~~~ 109 (601)
..|..|++..
T Consensus 98 ~~v~r~~~~~ 107 (353)
T 2g8s_A 98 TAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEECT
T ss_pred eEEEEEEECC
Confidence 3566666653
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.54 E-value=0.025 Score=52.27 Aligned_cols=142 Identities=8% Similarity=0.094 Sum_probs=91.1
Q ss_pred CCccEEEEeecCCCCcceEEEeeecCC--cCccceeEEEE--ccC-CC-eEEEEecCCcEEEEEcC-------CCceeee
Q 007489 295 HVKPSLFELKKGKVGQGEWIINKRQLP--RKLQFAHSMIF--SYD-SS-QLIIAGHDRRIYVVDVS-------SSELLHT 361 (601)
Q Consensus 295 ~~~v~l~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~--s~d-~~-~l~~~~~dg~i~vwd~~-------~~~~~~~ 361 (601)
++++.+|+++.. ...+-.+.....+ .....+..+++ +|. ++ ++++...+|.+..|++. +.+.+++
T Consensus 98 ~n~l~vf~iDp~--~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 98 KNTIEIYAIDGK--NGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp CCEEEEEEECTT--TCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCeEEEEEECCC--CCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 578999999641 1122111110001 11245566777 774 44 57788889999999982 3356777
Q ss_pred eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC-----CceEEEEeeccC-CCceeEEEec--CCCC
Q 007489 362 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE-----IQRQHWFISRLE-GASVTAAGFP--PQNN 433 (601)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~-----~~~~~~~~~~~~-~~~v~~l~~~--p~~~ 433 (601)
|.. ...+..|+..+....|+.+-.+.-|..|+.+ +.+.+..+...+ ...+..|++- + ++
T Consensus 176 f~l------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~-~g 242 (355)
T 3amr_A 176 FKM------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA-DG 242 (355)
T ss_dssp EEC------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG-GG
T ss_pred ecC------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC-CC
Confidence 774 4578899999999999999998777777754 234443332111 1367888874 4 44
Q ss_pred C-EEEEEe-CCCeEEEEEcC
Q 007489 434 N-VLIITT-SSNQVYVFDVE 451 (601)
Q Consensus 434 ~-~l~~~~-~dg~v~vwd~~ 451 (601)
+ +|++++ .++++.+||.+
T Consensus 243 ~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 243 KGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CEEEEEEEGGGTEEEEEESS
T ss_pred CEEEEEEcCCCCEEEEEECC
Confidence 5 677666 56799999996
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.52 E-value=0.05 Score=49.30 Aligned_cols=235 Identities=11% Similarity=0.118 Sum_probs=140.8
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
.++.-. ...|.++|+++..++..+... ..+.-..|-.+..+-......+.-|++.... .
T Consensus 80 ViALra-g~~LQiFnletK~klks~~~~--------e~VvfWkWis~~~L~lVT~taVyHWs~~~~s------------~ 138 (365)
T 2xzh_A 80 VIALKA-GKTLQIFNIEMKSKMKAHTMT--------DDVTFWKWISLNTVALVTDNAVYHWSMEGES------------Q 138 (365)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEEECS--------SCEEEEEECSSSEEEEEESSEEEEEESSTTC------------C
T ss_pred EEEEec-CCeEEEechHHhhhhcceecC--------CccEEEEecCCCeEEEEcCCcEEEEcccCCC------------C
Confidence 555544 568999999987766665532 1222233444455555566889999986422 1
Q ss_pred cceEEEEE-ecCCCCeEEEEEcCCCCEEEE-E---cC----CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc
Q 007489 264 TSLLVQVK-SKASRKIICSTISNSGMLFAY-S---DH----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 334 (601)
Q Consensus 264 ~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~-~---~~----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~ 334 (601)
+.++.... .-....|.....+++.+|++. | .+ |.+.||..+. .. .+.+.+|......+.+.-
T Consensus 139 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~------sQ~ieGhaa~F~~~~~~g 209 (365)
T 2xzh_A 139 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KV------SQPIEGHAASFAQFKMEG 209 (365)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---TE------EEEECCSEEEEEEECCTT
T ss_pred CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc---cc------cceeeeeeeeeEEEecCC
Confidence 22222221 112467888888999998876 4 23 4566776653 11 144556554333222211
Q ss_pred C---CCeEEEEecC---CcEEEEEcCCC---ce------eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 335 D---SSQLIIAGHD---RRIYVVDVSSS---EL------LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 335 d---~~~l~~~~~d---g~i~vwd~~~~---~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
+ ...++.+... ++++|.++... .. +..+-++ ....+-..++..|+.-..+..-+.-|
T Consensus 210 ~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp--------ea~~DFPVamqvs~kygviyviTK~G 281 (365)
T 2xzh_A 210 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--------EAQNDFPVAMQISEKHDVVFLITKYG 281 (365)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT--------TCTTCCEEEEEEETTTTEEEEEETTS
T ss_pred CCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc--------cccCCceEEEEecccCCEEEEEeCCc
Confidence 1 1234444332 58999998432 11 1111111 01456677899999888999999999
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccc
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEW 458 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 458 (601)
.|++||++++.+...-. .....|..-+-+. ...=++.....|+|.--.++...+.+.
T Consensus 282 ~ihlyDleTgt~i~~nr-IS~d~iF~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ivpy 338 (365)
T 2xzh_A 282 YIHLYDLETGTCIYMNR-ISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENIIPY 338 (365)
T ss_dssp EEEEEETTTCCEEEEEE-CCSSCEEEEEEEG-GGTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred EEEEEEcccCcEEEEec-cCCCceEEecccC-CCCcEEEEcCCCEEEEEEECcccEehh
Confidence 99999999999875433 4445666555554 434466667899998888888776554
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.50 E-value=0.12 Score=53.06 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=98.0
Q ss_pred cceeEEEEccCCCeEEEEec-CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE-EEecCCeEE
Q 007489 325 QFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCFGDVY 402 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la-s~~~dg~i~ 402 (601)
..+..++|.+....|+.+.. .+.|+.+++........+..... .......+..+++...++.|+ +-+..+.|.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~-----~~~~~~~p~glAvD~~~~nLY~td~~~~~I~ 414 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVP-----SQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccc-----cccccCCcceEEeeccCCeEEEEcCCCCEEE
Confidence 45788999987767666554 57788888753322222221000 000134678999998877665 555678999
Q ss_pred EEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCC-C--eEEEEEcCCCCcccchhcccCCcCcccccCCCcEEE
Q 007489 403 IFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS-N--QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIG 479 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 479 (601)
+.++++.... .+.......+.+|++.| ...+|..+... . .|...+++......+ ....-....+
T Consensus 415 v~~~~G~~~~-~l~~~~l~~Pr~iavdp-~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l-----------~~~~l~~P~g 481 (628)
T 4a0p_A 415 VTRLDGRSVG-VVLKGEQDRPRAVVVNP-EKGYMYFTNLQERSPKIERAALDGTEREVL-----------FFSGLSKPIA 481 (628)
T ss_dssp EEETTSCEEE-EEEECTTCCEEEEEEET-TTTEEEEEEEETTEEEEEEEETTSCSCEEE-----------ECSSCSCEEE
T ss_pred EEECCCCeEE-EEEeCCCCceeeEEEec-CCCeEEEeecCCCCCeEEEEeCCCCCcEEE-----------EeccCCCccE
Confidence 9999765433 33222235789999999 66666655432 2 577777765542211 1112346799
Q ss_pred EEeCCCCCCCEEEEEcC--ceEEEEeCCC
Q 007489 480 LSFSPSPSSSSVIIYSA--RAMCVIDFGR 506 (601)
Q Consensus 480 i~~~p~~~~~~~~~~~~--~~~~~~~~~~ 506 (601)
|+++++ .++|+.-+. ..+..++++.
T Consensus 482 la~D~~--~~~LYw~D~~~~~I~~~~~dG 508 (628)
T 4a0p_A 482 LALDSR--LGKLFWADSDLRRIESSDLSG 508 (628)
T ss_dssp EEEETT--TTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC--CCEEEEEeCCCCEEEEEeCCC
Confidence 999987 556655543 5677787754
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.37 E-value=0.0038 Score=65.16 Aligned_cols=121 Identities=11% Similarity=0.022 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCEEEEEc---CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe-cCCcEEEEEc
Q 007489 278 IICSTISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDV 353 (601)
Q Consensus 278 i~~~~~s~~g~~l~~~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~-~dg~i~vwd~ 353 (601)
...++++|.+.+|..+. .+.|..+++.. ..... + ........+.|+|+|++.+|+.+. ..+.|.++++
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~--l----~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYS--L----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCE--E----SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeE--E----EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 45667777655444432 24555555432 11111 1 111233457899999876666555 4578999998
Q ss_pred CCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 354 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
.. .....+..... .......|++..+ .++++....+.|..++..+++....+.
T Consensus 570 dG-~~~~~~~~~~~--------~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 570 NG-GNRKTILEDEK--------RLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SS-SCCEEECCCSS--------SCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CC-CceEEEEecCC--------cCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 63 33333322100 1223445566443 334444566889999988887765554
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.34 E-value=0.085 Score=47.86 Aligned_cols=222 Identities=8% Similarity=0.036 Sum_probs=134.2
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE-eCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
.+..|.+.|+.........+ ..+.+...+|...+++. +...+.|+++.+.. ++.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrp----------i~AdsAIMnP~~~ViALrag~~LQiFnletK~---------------klk 101 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRP----------ISADSAIMNPASKVIALKAGKTLQIFNIEMKS---------------KMK 101 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEE----------CCCSEEEECSSSSEEEEEETTEEEEEETTTTE---------------EEE
T ss_pred CCCEEEEEECCCCCCccccc----------cccceeeeCCCccEEEEecCCeEEEechHHhh---------------hhc
Confidence 33488888988744321111 12334446777776665 45889999998664 455
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec----
Q 007489 269 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---- 344 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---- 344 (601)
..... ..|.--.|-. .+.|+.-.+..|+-|++.......++++.. ..+. ...|..-..+++.++++..+-
T Consensus 102 s~~~~--e~VvfWkWis-~~~L~lVT~taVyHWs~~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~kW~~l~GI~~~~ 175 (365)
T 2xzh_A 102 AHTMT--DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQKWLLLTGISAQQ 175 (365)
T ss_dssp EEECS--SCEEEEEECS-SSEEEEEESSEEEEEESSTTCCCEEEEECC-GGGT--TCEEEEEEECTTSCEEEEEEEEEET
T ss_pred ceecC--CccEEEEecC-CCeEEEEcCCcEEEEcccCCCCCceeeecc-hhcc--cceEEEEEECCCCCEEEEEeEeccC
Confidence 55544 5676666754 356666677789999987533344443222 1222 356777778889998765543
Q ss_pred ---CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEcc---CCCEEEEEec---CCeEEEEEcCCc---e--
Q 007489 345 ---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS---DGQWLAAVNC---FGDVYIFNLEIQ---R-- 410 (601)
Q Consensus 345 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---d~~~las~~~---dg~i~iwd~~~~---~-- 410 (601)
.|.+.+|..+ .+.-+.+.+ |...-..+.+.- ..++++.+.. .+.++|.++... .
T Consensus 176 ~~v~G~mQLYS~e-r~~sQ~ieG-----------haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~ 243 (365)
T 2xzh_A 176 NRVVGAMQLYSVD-RKVSQPIEG-----------HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 243 (365)
T ss_dssp TEEEEEEEEEETT-TTEEEEECC-----------SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC
T ss_pred CccceeEEEEeec-ccccceeee-----------eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC
Confidence 3678899976 445566666 332222222210 1113333332 258999998543 1
Q ss_pred ---EEEEeecc---CCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 411 ---QHWFISRL---EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 411 ---~~~~~~~~---~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
....+.-. ...-..+|..++ ....+...+.-|.|++||++++.+
T Consensus 244 f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 244 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp CCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE
T ss_pred cccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcE
Confidence 11111111 134577889998 888999999999999999999975
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.33 E-value=0.098 Score=48.36 Aligned_cols=210 Identities=10% Similarity=0.111 Sum_probs=116.0
Q ss_pred eEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeC----CCC---EEEEE-ee--CCeEEEEEeccCcCCCCCCCC
Q 007489 50 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP----SHN---RVFST-GS--DGQVILYKASCESIGPNDGLS 119 (601)
Q Consensus 50 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~----~~~---~l~s~-~~--dg~i~vw~~~~~~~~~~~~~~ 119 (601)
.++.....+-+.++|+ +|+.++.+.. +.++.+..-| .|+ ++++. .. +++|.+|++.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~------- 111 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG------- 111 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-------
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-------
Confidence 5666677889999999 6999988864 4566666555 233 22333 33 57899998853221
Q ss_pred CccccceeEEecCc--c-ccc-cceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEE
Q 007489 120 SSEVIKKWIYVGSV--R-AHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 195 (601)
Q Consensus 120 ~~~~~~~~~~~~~~--~-~h~-~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~ 195 (601)
.+...... . ... ..+..+++..+ |.+. ..+++....+|.+.
T Consensus 112 ------~l~~i~~~~~pv~t~~~~pyGlcly~~-------~~~g----------------------~~yafV~~k~G~~~ 156 (355)
T 3amr_A 112 ------TLQSMTDPDHPIATAINEVYGFTLYHS-------QKTG----------------------KYYAMVTGKEGEFE 156 (355)
T ss_dssp ------CEEECSCTTSCEECCCSSCCCEEEEEC-------TTTC----------------------CEEEEEECSSSEEE
T ss_pred ------ceeeccccccCcCCCCCCeeEEEEEec-------CCCC----------------------cEEEEEECCCCeEE
Confidence 01111110 0 011 44555555200 2111 12577777778888
Q ss_pred EEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCC
Q 007489 196 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (601)
.|++.... ++ ....+.+.++...
T Consensus 157 q~~l~~~~--------------------------~g-----------------------------~~~~~lVR~f~lg-- 179 (355)
T 3amr_A 157 QYELKADK--------------------------NG-----------------------------YISGKKVRAFKMN-- 179 (355)
T ss_dssp EEEEEECT--------------------------TS-----------------------------CEEEEEEEEEECS--
T ss_pred EEEEEeCC--------------------------CC-----------------------------cccceEEEEecCC--
Confidence 77764310 00 0011244455444
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCC---cceEEEeeecCCcCccceeEEEE--ccCCC-eEEEEe-cCCcE
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG---QGEWIINKRQLPRKLQFAHSMIF--SYDSS-QLIIAG-HDRRI 348 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~--s~d~~-~l~~~~-~dg~i 348 (601)
..+-.+...+....|.++... +-||.+...... ..+ +...........+..|++ .++++ +|++++ .+++.
T Consensus 180 sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~--v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 180 SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTV--IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEE--EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceE--EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 457788888877777776554 457777742111 122 211112222235677777 56666 666666 46789
Q ss_pred EEEEcC-CCceeeeecc
Q 007489 349 YVVDVS-SSELLHTFTP 364 (601)
Q Consensus 349 ~vwd~~-~~~~~~~~~~ 364 (601)
.+||.. +.+.+..|..
T Consensus 257 ~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 257 AIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEESSTTCCEEEEEEE
T ss_pred EEEECCCCCcEEEEEEe
Confidence 999986 5666666653
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.31 E-value=0.016 Score=54.66 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCccEEEEeecCCC-Cc-----ceEEEeeecCC----cCccceeEEEEccC---CCeEEEEe
Q 007489 277 KIICSTISNSGMLFAYSDHVKPSLFELKKGKV-GQ-----GEWIINKRQLP----RKLQFAHSMIFSYD---SSQLIIAG 343 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~-~~-----~~~~~~~~~~~----~~~~~v~~i~~s~d---~~~l~~~~ 343 (601)
.+..+..||+|++||...+..|.+..+..... .. ...+.....+. ....+|..+.|+|- +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 57789999999999998888999999984211 10 00111111111 12467999999994 56799999
Q ss_pred cCCcEEEEEcCCCc--eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe--cCCeEEEE
Q 007489 344 HDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN--CFGDVYIF 404 (601)
Q Consensus 344 ~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~--~dg~i~iw 404 (601)
.|+.|++||+.... +. .+..... .-........|.+++|++++-.|...+ ..|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~--~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNN--SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCS--EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhcccc--ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999997522 22 3321100 001111347799999999887776655 77877654
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.28 E-value=0.017 Score=52.88 Aligned_cols=169 Identities=8% Similarity=0.073 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCC-CEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCc----C--ccceeEEEE---ccCCCeEEEEec
Q 007489 276 RKIICSTISNSG-MLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPR----K--LQFAHSMIF---SYDSSQLIIAGH 344 (601)
Q Consensus 276 ~~i~~~~~s~~g-~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~----~--~~~v~~i~~---s~d~~~l~~~~~ 344 (601)
....+++|.+.. .+++++ ..++|..|+... + ....+ .++. . ...+..+.+ .|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~---~-~~~~~---~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT---Q-SHFNV---VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTT---C-CEEEE---CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCC---C-eEEEE---ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 334577887754 444444 578888887752 2 22112 2222 1 124578999 688777775442
Q ss_pred -------------CCcEEEEEcC---CCceeeeeccCccccc-ccCCC-CCCCeeEEEEccCCCEEEEEecC-CeEEEEE
Q 007489 345 -------------DRRIYVVDVS---SSELLHTFTPCREEHD-REIQP-SEPPITKMFTSSDGQWLAAVNCF-GDVYIFN 405 (601)
Q Consensus 345 -------------dg~i~vwd~~---~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~l~~spd~~~las~~~d-g~i~iwd 405 (601)
+..|..||+. +++.+....-...... ..+.+ -......++..++|+..++++.. +.|...+
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 5779999998 7776654431100000 00000 01247899999999999999888 8888888
Q ss_pred cCCceEE-EEeec---cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 406 LEIQRQH-WFISR---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 406 ~~~~~~~-~~~~~---~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.+..... +.+.. ......+.|+++| ++..|++....|.|..+|+..
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 7765332 11111 1113467999999 999999998899999999983
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.24 E-value=0.0008 Score=70.26 Aligned_cols=93 Identities=11% Similarity=-0.060 Sum_probs=52.6
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC-eEEEE-cCCCcEEEeeCCc----cchhhhccccccceE
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRH----GTLLQAHSFHKGDVN 82 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g-~l~s~-~~dg~i~vwd~~~----~~~~~~~~~h~~~V~ 82 (601)
+.|++.++.+.+....+. ....+..|+|.+.+ .|..+ ...+.|+.+++.. ......+........
T Consensus 386 ~~I~~id~~~~~~~~~~~---------~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 456 (699)
T ss_dssp TC-CEECTTSCCEECCSC---------CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred cceEEEeCCCCcceeeec---------cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence 467777776554433222 12235678898865 55544 4568899999874 222222222223456
Q ss_pred EEEEeCCCCEE-EEEeeCCeEEEEEeccC
Q 007489 83 ALAAAPSHNRV-FSTGSDGQVILYKASCE 110 (601)
Q Consensus 83 ~l~~s~~~~~l-~s~~~dg~i~vw~~~~~ 110 (601)
.|++.+.+..| ++-...+.|.++++.+.
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 78888644444 44455678888887654
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.20 E-value=0.08 Score=48.74 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=60.3
Q ss_pred CCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEEEE
Q 007489 335 DSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVYIF 404 (601)
Q Consensus 335 d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~iw 404 (601)
+++.++.|+.+ ..+.+||+.+.+-... .... ........+.+ ++++++.|+.+ ..+.+|
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p--------~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 227 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMA--------TKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAY 227 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCS--------SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCC--------cccccceEEEE--CCEEEEEeCCCCCcccceEEEE
Confidence 67777777654 4588999876643221 1100 01111222333 67777777764 469999
Q ss_pred EcCCceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 007489 405 NLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQ 454 (601)
Q Consensus 405 d~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 454 (601)
|+.+.+.... ..... ..-.+++.. ++++++.|+.+ ..|.+||+++.+
T Consensus 228 d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 228 NIRTDSWTTV-TSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred eCCCCcEEEC-CCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 9988876533 32221 111222222 56677777765 468889988764
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.17 E-value=0.029 Score=52.94 Aligned_cols=154 Identities=13% Similarity=0.191 Sum_probs=101.0
Q ss_pred EEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCc--CccceeEEEEccCCCeEEEEecCCcEEEEEcCCCce-
Q 007489 282 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR--KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL- 358 (601)
Q Consensus 282 ~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~- 358 (601)
....+|.-+++..++.||.-++... ..-+. ...+. ....+..+..+|+|++||..+ +..|.|..+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~-----L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTD-SLYHS-----LNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTC-SSCEE-----EECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEEECCEEEEEECCCC-CcceE-----EecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCcccc
Confidence 3456788888888899999888741 11121 22222 223568899999999999876 55799999873321
Q ss_pred -----------eeeeccCcccccccCCCCCCCeeEEEEccC---CCEEEEEecCCeEEEEEcCCc--eEEEEeeccC---
Q 007489 359 -----------LHTFTPCREEHDREIQPSEPPITKMFTSSD---GQWLAAVNCFGDVYIFNLEIQ--RQHWFISRLE--- 419 (601)
Q Consensus 359 -----------~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---~~~las~~~dg~i~iwd~~~~--~~~~~~~~~~--- 419 (601)
.+.+.-.. .......+|..+.|+|- +..|++-..|+.|++||+... ++. .+....
T Consensus 100 ~~~~~~~~~~q~~ty~l~~-----~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f 173 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDE-----EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF 173 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGG-----CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred CcccccccccceeEEEcCC-----cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence 11222110 00113578999999995 568999999999999999752 122 232211
Q ss_pred C-----CceeEEEecCCCCCEEEEEe--CCCeEEEEE
Q 007489 420 G-----ASVTAAGFPPQNNNVLIITT--SSNQVYVFD 449 (601)
Q Consensus 420 ~-----~~v~~l~~~p~~~~~l~~~~--~dg~v~vwd 449 (601)
+ ..|.+++|.+ ++-.|.+.+ ..|.|+-..
T Consensus 174 g~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 174 GLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred CCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 1 5689999999 888888865 778876653
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.17 E-value=0.14 Score=48.01 Aligned_cols=147 Identities=7% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCeEEEEEcC--CCC--EEEEE---cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec----
Q 007489 276 RKIICSTISN--SGM--LFAYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---- 344 (601)
Q Consensus 276 ~~i~~~~~s~--~g~--~l~~~---~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---- 344 (601)
.....+.+.+ ++. ++++. ....+.+|+++.. +... ..............+.+++.++|+++++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~--~~~~-~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd 188 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE--EKSL-LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFID 188 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT--TTEE-EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSS
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECC--CCEE-EEEeccccCCCCCCceEEEeCCCCEEecCCcEeCC
Confidence 4566777655 453 44442 3567889999862 2221 1211111223456789999999987776541
Q ss_pred -------------CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCC-c
Q 007489 345 -------------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEI-Q 409 (601)
Q Consensus 345 -------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~-~ 409 (601)
.|.|..+|. ++.. .+.. .-...+.++||||+++|+.+. ..+.|+.|+++. +
T Consensus 189 ~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 189 PYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp HHHHHHHHHTTCCCEEEEEECT--TCCE-EEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred cccccchhhccCCccEEEEEEC--CeEE-Eeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 234444443 3322 2221 234578999999999887765 578899999863 3
Q ss_pred eE--EEEeeccCCCceeEEEecCCC-CCEEEEEeCC
Q 007489 410 RQ--HWFISRLEGASVTAAGFPPQN-NNVLIITTSS 442 (601)
Q Consensus 410 ~~--~~~~~~~~~~~v~~l~~~p~~-~~~l~~~~~d 442 (601)
+. ...+. . ...+-.+++.+ + |++.+++..+
T Consensus 255 ~l~~~~~~~-~-~g~PDGi~vD~-e~G~lwva~~~~ 287 (355)
T 3sre_A 255 TLTPLRVLS-F-DTLVDNISVDP-VTGDLWVGCHPN 287 (355)
T ss_dssp CEEEEEEEE-C-SSEEEEEEECT-TTCCEEEEEESC
T ss_pred cEecCEEEe-C-CCCCceEEEeC-CCCcEEEEecCC
Confidence 22 12232 2 24567777776 5 6665555433
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.16 E-value=0.18 Score=47.81 Aligned_cols=235 Identities=11% Similarity=0.117 Sum_probs=142.1
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
.++.-. ...+.++|+++..++..+.... .+.-..|-.+..+-......+.-|++.... .
T Consensus 79 iiALra-g~~lQiFnle~K~klks~~~~e--------~VvfWkWis~~~l~lVT~taVyHWsi~~~s------------~ 137 (494)
T 1bpo_A 79 VIALKA-GKTLQIFNIEMKSKMKAHTMTD--------DVTFWKWISLNTVALVTDNAVYHWSMEGES------------Q 137 (494)
T ss_dssp CEEEEE-TTEEEEEETTTTEEEEEEECSS--------CCCEEEEEETTEEEEECSSEEEEEESSSSC------------C
T ss_pred EEEEec-CCeEEEEchHHhhhhcceecCC--------CceEEEecCCCeEEEEcCCeeEEecccCCC------------C
Confidence 444443 6799999999877666554321 111222333444555566889999986422 1
Q ss_pred cceEEEEE-ecCCCCeEEEEEcCCCCEEEE-E---cC----CccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEcc
Q 007489 264 TSLLVQVK-SKASRKIICSTISNSGMLFAY-S---DH----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 334 (601)
Q Consensus 264 ~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~-~---~~----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~ 334 (601)
+.++.... .-....|.....+++.+|++. | .+ |.+.+|..+. .. .+.+.+|......+.+.-
T Consensus 138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~------sQ~ieGhaa~F~~~~~~g 208 (494)
T 1bpo_A 138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KV------SQPIEGHAASFAQFKMEG 208 (494)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---CC------EEEECCSEEEEEEEECTT
T ss_pred chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---cc------cchheeeeeeeEEEecCC
Confidence 22222221 112467888888999999876 3 23 4566777654 11 144566655443333321
Q ss_pred C---CCeEEEEecC---CcEEEEEcCCC---c------eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC
Q 007489 335 D---SSQLIIAGHD---RRIYVVDVSSS---E------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 335 d---~~~l~~~~~d---g~i~vwd~~~~---~------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg 399 (601)
+ ...++.+... +.++|.++... . .+..+-++ ....+-..++..|+.-..+..-+.-|
T Consensus 209 ~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp--------e~~~DFPvamqvs~kygviyviTK~G 280 (494)
T 1bpo_A 209 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--------EAQNDFPVAMQISEKHDVVFLITKYG 280 (494)
T ss_dssp CSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT--------TSTTCCEEEEEEETTTTEEEEEETTS
T ss_pred CCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc--------ccccCceeEEEecccCCEEEEEecCc
Confidence 1 1244444443 78999998532 1 11111111 01356677899999999999999999
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccc
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEW 458 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 458 (601)
.|++||++++.+...-. .....|..-+-.. ...=++.....|+|.--.++...+.+.
T Consensus 281 ~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ivpy 337 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNR-ISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENIIPY 337 (494)
T ss_dssp EEEEEETTTCCEEEEEE-CCSSCEEEEEEET-TTTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred eEEEEecccceeeeeec-ccCCceEEecccC-CCCcEEEEccCceEEEEEEccccchhh
Confidence 99999999999875433 4445666656655 444566777899988888888776544
No 315
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.034 Score=54.53 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=92.0
Q ss_pred CCeEEEEEcCC-C-CEEEEE-cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEE-------ccCCCeEEEEecC
Q 007489 276 RKIICSTISNS-G-MLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF-------SYDSSQLIIAGHD 345 (601)
Q Consensus 276 ~~i~~~~~s~~-g-~~l~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-------s~d~~~l~~~~~d 345 (601)
.....++++|. . +++++. ..+.|++.|+.. ..+-.+.. .-.........++| ++++.+|+++...
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----~~v~~l~~-~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----RMLSSPLN-INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTT----TEEEEEEC-CTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCC----CEEEEEEc-cCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 35778999983 4 444443 234455555442 22211211 11112345789999 9999977777665
Q ss_pred C-------cEEEEEcCC-Ccee-----eeeccCcccccccCCCCCCCeeEEEEccCCCE-EEEEecCCeEEEEEcC----
Q 007489 346 R-------RIYVVDVSS-SELL-----HTFTPCREEHDREIQPSEPPITKMFTSSDGQW-LAAVNCFGDVYIFNLE---- 407 (601)
Q Consensus 346 g-------~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~-las~~~dg~i~iwd~~---- 407 (601)
+ .|.+++... ++.. ..+.. . .....++++|++.+ +++-..++.|+.+|++
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-----------~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-----------Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-----------E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred CCCcccCceEEEEecCCCCceeecccceeecc-----------C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccc
Confidence 4 266666433 2221 12211 1 13457889995554 5555577889999997
Q ss_pred ---CceE-----------EEE-eeccCCCceeEEEecCCCCCEEEEEe-CCCeEEEEEcCC
Q 007489 408 ---IQRQ-----------HWF-ISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEA 452 (601)
Q Consensus 408 ---~~~~-----------~~~-~~~~~~~~v~~l~~~p~~~~~l~~~~-~dg~v~vwd~~~ 452 (601)
++.. ... +..........|+|+| ++++|.++. ..+.|+.++...
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence 4443 111 2222234678999999 998666554 567899876643
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.12 E-value=0.17 Score=47.09 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=47.5
Q ss_pred CceEEEEEEEeeCCe-EEEEcCCCcEEEeeCCccch--hh----hccccccceEEEEEeCC---CCEEEEE---eeCCeE
Q 007489 36 PELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTL--LQ----AHSFHKGDVNALAAAPS---HNRVFST---GSDGQV 102 (601)
Q Consensus 36 h~~~V~~v~~s~~g~-l~s~~~dg~i~vwd~~~~~~--~~----~~~~h~~~V~~l~~s~~---~~~l~s~---~~dg~i 102 (601)
.-..-+.|+|.|||. +++--..|.|++++..+++. +. .+.......+.|+++|+ +.+|+.. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344578999999994 45544489999998765543 21 11223567899999995 4555543 234566
Q ss_pred EEEEecc
Q 007489 103 ILYKASC 109 (601)
Q Consensus 103 ~vw~~~~ 109 (601)
.-|.+..
T Consensus 110 ~R~~~~~ 116 (347)
T 3das_A 110 VRMLYDE 116 (347)
T ss_dssp EEEEBCT
T ss_pred EEEEeCC
Confidence 6666654
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.11 E-value=0.17 Score=47.81 Aligned_cols=150 Identities=8% Similarity=-0.038 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeee-cCCcCccceeEEEEccC---CCeEEEEecC-----
Q 007489 275 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR-QLPRKLQFAHSMIFSYD---SSQLIIAGHD----- 345 (601)
Q Consensus 275 ~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~s~d---~~~l~~~~~d----- 345 (601)
-.....+++.|+|+++++...+.|++++ . ..... +... ...........|+++|+ +..|+++...
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~--g~~~~--~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--E--GRLST--YAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--T--TEEEE--EEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--C--CCccE--eecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 4567899999999988887668887776 2 11111 1111 11222446789999998 5565555442
Q ss_pred -CcEEEEEcCCCce------eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-------------CCeEEEEE
Q 007489 346 -RRIYVVDVSSSEL------LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-------------FGDVYIFN 405 (601)
Q Consensus 346 -g~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-------------dg~i~iwd 405 (601)
+.|..|+...+.. +..+.... . .......++|+|||.+.++.+. .|.|.-++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~------~--~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARP------H--GLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCT------T--CCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCC------C--CCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 6788888764321 11122100 0 1122368999999976665432 25666666
Q ss_pred cCCc------------eEEEEeeccCCCceeEEEecCCCCCEEEEEe
Q 007489 406 LEIQ------------RQHWFISRLEGASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 406 ~~~~------------~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~ 440 (601)
.+.. .....+...+ ..+..++|+| +...|.++.
T Consensus 176 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~-~~g~l~v~d 220 (352)
T 2ism_A 176 PEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHP-KTGELFSSE 220 (352)
T ss_dssp TTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECT-TTCCEEEEE
T ss_pred CCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEEC-CCCCEEEEE
Confidence 6541 0000111111 3467889998 444455554
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.02 E-value=0.24 Score=46.92 Aligned_cols=222 Identities=8% Similarity=0.040 Sum_probs=134.3
Q ss_pred CCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEE-eCCeeEEeeccccCCcccCCCCCCCCCcceEE
Q 007489 190 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLV 268 (601)
Q Consensus 190 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (601)
.+..|.+.|+.........+ ..+.+...+|...+++- ....+.|+++.+.. ++.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrp----------i~AdsAIMnP~~~iiALrag~~lQiFnle~K~---------------klk 100 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRP----------ISADSAIMNPASKVIALKAGKTLQIFNIEMKS---------------KMK 100 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEE----------CCCSEEEECSSSSCEEEEETTEEEEEETTTTE---------------EEE
T ss_pred CCCeEEEEECCCCCcceecc----------cccceeeeCCCCcEEEEecCCeEEEEchHHhh---------------hhc
Confidence 33488888988744322111 22334446676665554 45889999998654 444
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec----
Q 007489 269 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---- 344 (601)
Q Consensus 269 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~---- 344 (601)
..... ..|.--.|-. .+.|+.-.+..|+-|++.......++++.. ..+. ...|..-..+++.++++..+-
T Consensus 101 s~~~~--e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~kW~~l~GI~~~~ 174 (494)
T 1bpo_A 101 AHTMT--DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQKWLLLTGISAQQ 174 (494)
T ss_dssp EEECS--SCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTSSEEEEEEEEEET
T ss_pred ceecC--CCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCCCeEEEEeecccC
Confidence 55443 3454444533 356666677889999987533344443222 1222 356777788889998765442
Q ss_pred ---CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC---CCEEEEEec---CCeEEEEEcCCc------
Q 007489 345 ---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD---GQWLAAVNC---FGDVYIFNLEIQ------ 409 (601)
Q Consensus 345 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---~~~las~~~---dg~i~iwd~~~~------ 409 (601)
.|.+.+|..+. +.-+.+.+ |...-..+.+.-+ .++++.+.. .+.++|.++...
T Consensus 175 ~~v~G~mQLYS~er-~~sQ~ieG-----------haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~ 242 (494)
T 1bpo_A 175 NRVVGAMQLYSVDR-KVSQPIEG-----------HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (494)
T ss_dssp TEEEEEEEEEESTT-CCEEEECC-----------SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC
T ss_pred CcccceEEEeeccc-cccchhee-----------eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC
Confidence 36788999763 44566666 4333333332111 124444443 278999998543
Q ss_pred --eEEEEeec---cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 410 --RQHWFISR---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 410 --~~~~~~~~---~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+....+.- ....-..+|..++ ....+...+.-|.|++||++++.+
T Consensus 243 f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 243 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp CCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE
T ss_pred ccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEeccccee
Confidence 11111111 1124577899999 888999999999999999999975
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.84 E-value=0.28 Score=44.99 Aligned_cols=67 Identities=9% Similarity=0.140 Sum_probs=39.0
Q ss_pred CCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEEEE
Q 007489 335 DSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVYIF 404 (601)
Q Consensus 335 d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~iw 404 (601)
+++.++.|+.+ ..+.+||+.+.+-.. +..... .......+.+ ++++++.|+.+ ..|.+|
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTSMTT--------PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-ECCCSS--------CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEE-CCCCCC--------cccceeEEEE--CCEEEEEcCcCCCcccccEEEE
Confidence 56777777764 468999987665322 111000 1111222333 77777887765 468889
Q ss_pred EcCCceEE
Q 007489 405 NLEIQRQH 412 (601)
Q Consensus 405 d~~~~~~~ 412 (601)
|+++.+..
T Consensus 275 d~~~~~W~ 282 (301)
T 2vpj_A 275 DPIIDSWE 282 (301)
T ss_dssp ETTTTEEE
T ss_pred cCCCCeEE
Confidence 98877643
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.81 E-value=0.23 Score=46.98 Aligned_cols=31 Identities=6% Similarity=-0.087 Sum_probs=19.7
Q ss_pred cCCCEEEEEecCC------eEEEEEcCCceEEEEeec
Q 007489 387 SDGQWLAAVNCFG------DVYIFNLEIQRQHWFISR 417 (601)
Q Consensus 387 pd~~~las~~~dg------~i~iwd~~~~~~~~~~~~ 417 (601)
.++++++.|+.++ .|.++++++++.....+.
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 4788888888543 466778888877655443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.76 E-value=0.33 Score=44.57 Aligned_cols=104 Identities=7% Similarity=0.052 Sum_probs=59.6
Q ss_pred CCCeEEEEecC-------CcEEEEEcCCCceee--eeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----Ce
Q 007489 335 DSSQLIIAGHD-------RRIYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GD 400 (601)
Q Consensus 335 d~~~l~~~~~d-------g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~ 400 (601)
+++.++.|+.+ ..+.+||+.+.+-.. .+.. .......+.+ ++++++.|+.+ ..
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 221 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-----------RRSGAGVGVL--NNLLYAVGGHDGPLVRKS 221 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-----------CCBSCEEEEE--TTEEEEECCBSSSSBCCC
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-----------ccccccEEEE--CCEEEEECCCCCCcccce
Confidence 56666766542 358899987664322 1111 1111222333 67788887764 36
Q ss_pred EEEEEcCCceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 007489 401 VYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQ 454 (601)
Q Consensus 401 i~iwd~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 454 (601)
+.+||+.+.+... +..... ..-.+++.. ++.+++.|+.+ ..+.+||+++.+
T Consensus 222 ~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 222 VEVYDPTTNAWRQ-VADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCCEee-CCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 9999998876543 222221 111222222 56777787765 358999998865
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.74 E-value=0.49 Score=46.27 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=38.8
Q ss_pred eEEEEEEEeeCCeEEEEcCC-CcEEEeeCCccch--hhhcc------ccccceEEEEEeCC---CCEEEEEe
Q 007489 38 LCIWSLLSLRCGTLVSADST-GSVQFWDSRHGTL--LQAHS------FHKGDVNALAAAPS---HNRVFSTG 97 (601)
Q Consensus 38 ~~V~~v~~s~~g~l~s~~~d-g~i~vwd~~~~~~--~~~~~------~h~~~V~~l~~s~~---~~~l~s~~ 97 (601)
...++|+|.|+|.|+.+... +.|++++..+++. +..+. ......+.|+|+|+ +..|+.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 35679999999955555555 4799888655542 22221 12456789999996 56665443
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.47 E-value=0.032 Score=47.39 Aligned_cols=157 Identities=10% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecC-CcCccceeEEEEccCCCeEEEEecCCcEEEEEcC
Q 007489 276 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 354 (601)
Q Consensus 276 ~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~ 354 (601)
..+..++|+|+|.+.++ .++. ||...........|--....+ ..--....++.|.|+|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999998888 6665 555543222222221000000 000112478999999987776 56988877653
Q ss_pred CCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCce------EEEEeeccCCCceeEEEe
Q 007489 355 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR------QHWFISRLEGASVTAAGF 428 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~l~~ 428 (601)
+...-.-+...... -..-=..+..|.|.|+|.+.|+. |+.++-....+.. ....+-.-.-.....+.|
T Consensus 116 ~~~~~~Wl~~a~~v----g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 116 QSDTDNWIARATEV----GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CSTTCCHHHHSEEE----ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred cCCCCceeccccEe----ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 21110000000000 00011457999999999988777 7775433322111 001111111124556779
Q ss_pred cCCCCCEEEEEeCCCeEE
Q 007489 429 PPQNNNVLIITTSSNQVY 446 (601)
Q Consensus 429 ~p~~~~~l~~~~~dg~v~ 446 (601)
.+ ++.+.++. ++.++
T Consensus 190 ~~-~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 190 SS-VGTLFGVQ--GGKFY 204 (236)
T ss_dssp CT-TSCEEEEE--TTEEE
T ss_pred CC-CCcEEEEe--CCeEE
Confidence 98 88766665 77443
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.43 E-value=0.15 Score=48.13 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=85.1
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccC---CCEEEEEe-c----
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD---GQWLAAVN-C---- 397 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---~~~las~~-~---- 397 (601)
....|+|.|+|+.|+++...|.|++++.. ++....+..... ...........|+++|+ +.+|.... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~----v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPD----VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCC----CCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcc----cccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 45799999999845556678999999853 433222221000 00012446789999996 55554443 2
Q ss_pred ---CCeEEEEEcCCc-----eEEEEeeccC-----CCceeEEEecCCCCCEEEEEeC-------------CCeEEEEEcC
Q 007489 398 ---FGDVYIFNLEIQ-----RQHWFISRLE-----GASVTAAGFPPQNNNVLIITTS-------------SNQVYVFDVE 451 (601)
Q Consensus 398 ---dg~i~iwd~~~~-----~~~~~~~~~~-----~~~v~~l~~~p~~~~~l~~~~~-------------dg~v~vwd~~ 451 (601)
...|..|+++.. .....+.... ......|+|.| |+.+.++.+. .|.|.-++.+
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235777776532 1111222111 12346799999 9865555443 2467777766
Q ss_pred CCCcccchhcccC-----CcCcccccCCCcEEEEEeCCCCCCCEEEEEc
Q 007489 452 AKQLGEWSMQHTF-----VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 452 ~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
..-.. .++. ..++.+..--....+++|+|. .+.+++.+
T Consensus 173 G~~p~----~npf~~~~~~~~~i~a~G~rnp~gl~~d~~--~g~l~~~d 215 (353)
T 2g8s_A 173 GEIPD----DNPFIKESGVRAEIWSYGIRNPQGMAMNPW--SNALWLNE 215 (353)
T ss_dssp SCCCT----TCTTTTSTTSCTTEEEECCSEEEEEEEETT--TTEEEEEE
T ss_pred CCCCC----CCCCcCCCCCCccEEEEcCcCccceEEECC--CCCEEEEe
Confidence 43110 0000 012222211235789999995 46777764
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.42 E-value=0.56 Score=43.05 Aligned_cols=105 Identities=12% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCCeEEEEec---------CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----Ce
Q 007489 335 DSSQLIIAGH---------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GD 400 (601)
Q Consensus 335 d~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~ 400 (601)
+++.++.|+. -..+.+||..+.+-.. +..... ....-..+.+ ++++++.|+.+ ..
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIE--------ARKNHGLVFV--KDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSS--------CCBSCEEEEE--TTEEEEECCEETTEEBCC
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccc--------hhhcceEEEE--CCEEEEEeCCCCCCCCce
Confidence 6666666654 3458899987764321 111100 1111222223 67777777653 46
Q ss_pred EEEEEcCCceEEEEeeccCC--CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 007489 401 VYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQ 454 (601)
Q Consensus 401 i~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 454 (601)
+.+||+.+.+... +..... .....+.+ ++.+++.|+.+ ..+.+||+++.+
T Consensus 218 ~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 218 VEYYDIKLNEWKM-VSPMPWKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEETTTTEEEE-CCCCSCCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEeeCCCCcEEE-CCCCCCCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 8999998876543 222221 12222333 56788888754 578999998865
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.37 E-value=0.6 Score=42.93 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEEEE
Q 007489 335 DSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVYIF 404 (601)
Q Consensus 335 d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~iw 404 (601)
++++++.|+.+ ..+.+||+.+.+-.. +.... ........+.+ ++++++.|+.+ ..+.+|
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p--------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMN--------TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCS--------SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEee-CCCCC--------CccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 66677777654 458899987654321 11100 01112223333 77777777754 469999
Q ss_pred EcCCceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 007489 405 NLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQ 454 (601)
Q Consensus 405 d~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 454 (601)
|+.+.+... +..... ..-.+++.. ++++++.|+.+ ..+.+||+++.+
T Consensus 237 d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 237 DVETETWTF-VAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCcEEE-CCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 998876543 222221 111223333 56777777754 468899988764
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.33 E-value=0.63 Score=42.72 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=39.1
Q ss_pred CCCeEEEEecC-----CcEEEEEcCCCcee--eeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEE
Q 007489 335 DSSQLIIAGHD-----RRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVY 402 (601)
Q Consensus 335 d~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~ 402 (601)
++++++.|+.+ ..+.+||+.+.+-. ..+.. .......+.+ ++++++.|+.+ ..+.
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-----------KGVTVKCAAV--GSIVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC-----------CBSCCEEEEE--TTEEEEEECBCSSSBCCEEE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-----------CccceeEEEE--CCEEEEEeCcCCCeeeeeEE
Confidence 66677776653 45889998765422 11111 1122233333 77788888754 5689
Q ss_pred EEEcCCceEE
Q 007489 403 IFNLEIQRQH 412 (601)
Q Consensus 403 iwd~~~~~~~ 412 (601)
+||+.+.+..
T Consensus 267 ~yd~~~~~W~ 276 (306)
T 3ii7_A 267 EYNTETDKWV 276 (306)
T ss_dssp EEETTTTEEE
T ss_pred EEcCCCCeEE
Confidence 9999887654
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.32 E-value=0.3 Score=45.53 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=93.9
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEc-CCccEEEEeecCCCCcceEEEeee--cCCcCccceeEEEEccC---CCeEEEE-e-
Q 007489 272 SKASRKIICSTISNSGMLFAYSD-HVKPSLFELKKGKVGQGEWIINKR--QLPRKLQFAHSMIFSYD---SSQLIIA-G- 343 (601)
Q Consensus 272 ~~~~~~i~~~~~s~~g~~l~~~~-~~~v~l~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~s~d---~~~l~~~-~- 343 (601)
...-.....+++.|||+++++.. .+.|++++... +... .+... ...........|+++|+ +.+|++. +
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~---g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT---GRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCC---CcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 34457789999999999888875 78887775432 2211 11111 11233456789999995 3444443 2
Q ss_pred -cCCcEEEEEcCCCc--------eeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-------------CCeE
Q 007489 344 -HDRRIYVVDVSSSE--------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-------------FGDV 401 (601)
Q Consensus 344 -~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-------------dg~i 401 (601)
.++.|.-|.+..+. ....+.... .. ....-..|+|.|||.+.++.+. .|.|
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p-----~~--~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~I 176 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP-----KG--VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKI 176 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC-----CC--SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCE
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCC-----CC--CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEE
Confidence 34556666665421 111111100 00 1223467999999987766432 3555
Q ss_pred EEEEcCCc--------eEEEEeeccCCCceeEEEecCCCCCEEEEE-eCCCeEEEEEcCCCCcccc
Q 007489 402 YIFNLEIQ--------RQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSNQVYVFDVEAKQLGEW 458 (601)
Q Consensus 402 ~iwd~~~~--------~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~-~~dg~v~vwd~~~~~~~~~ 458 (601)
.-++.+.. .. ..+..-+ .....++|+| ++.+.++- +.|+.=.|--+..+.--.|
T Consensus 177 lRi~~dG~ip~~nPf~~~-~i~a~G~-RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGw 239 (347)
T 3das_A 177 LRMTPDGEPAPGNPFPGS-PVYSYGH-RNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGW 239 (347)
T ss_dssp EEECTTSSBCTTCSSTTC-CEEEBCC-SBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCT
T ss_pred EEEeCCCCccCCCCCCCC-eEEeeCC-CCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecC
Confidence 55565533 11 0122112 3578899999 87655443 2344344555555554445
No 329
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.30 E-value=0.75 Score=43.27 Aligned_cols=62 Identities=11% Similarity=-0.106 Sum_probs=41.0
Q ss_pred CCeeEEEEc-------cCCCEEEEEecCCeEEEEEcCCc-eEE--EEeeccCCCceeEEEecCCCCCEEEEEe
Q 007489 378 PPITKMFTS-------SDGQWLAAVNCFGDVYIFNLEIQ-RQH--WFISRLEGASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 378 ~~i~~l~~s-------pd~~~las~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~v~~l~~~p~~~~~l~~~~ 440 (601)
.....++|. .+|+++++.-..+.|...+++.. +.. ..+..-....+..+++.| |+.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 457888883 57777777777788999998753 221 122111135789999999 887665553
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.28 E-value=0.66 Score=42.46 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=39.1
Q ss_pred CCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC-----eEEEE
Q 007489 335 DSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-----DVYIF 404 (601)
Q Consensus 335 d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg-----~i~iw 404 (601)
++++++.|+.+ ..+.+||+.+.+-.. +..... .......+.+ ++++++.|+.++ .+.+|
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 272 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNM--------CRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYY 272 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSS--------CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCC--------ccccCeEEEE--CCEEEEECCcCCCcccccEEEE
Confidence 67777777664 368999987664322 111100 1111122223 777878877653 48999
Q ss_pred EcCCceEE
Q 007489 405 NLEIQRQH 412 (601)
Q Consensus 405 d~~~~~~~ 412 (601)
|+++.+..
T Consensus 273 d~~~~~W~ 280 (302)
T 2xn4_A 273 NPTTDKWT 280 (302)
T ss_dssp ETTTTEEE
T ss_pred cCCCCeEE
Confidence 99887654
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.98 E-value=0.54 Score=45.99 Aligned_cols=110 Identities=6% Similarity=0.066 Sum_probs=62.6
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCcee--eeeccCcccccccCCCCCCCeeEEEEccC---CCEEEEEec---
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSD---GQWLAAVNC--- 397 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spd---~~~las~~~--- 397 (601)
....|+|.|+|+++++-...+.|++++..+++.. ..+..... .......+..|+|+|| +.+|..+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~-----~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN-----DADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC-----CTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc-----ccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 4579999999987665443357888876555432 22221000 0002456789999996 555554432
Q ss_pred ----------CCeEEEEEcCCc-----eEEEE---eeccCCCceeEEEecCCCCCEEEEEeC
Q 007489 398 ----------FGDVYIFNLEIQ-----RQHWF---ISRLEGASVTAAGFPPQNNNVLIITTS 441 (601)
Q Consensus 398 ----------dg~i~iwd~~~~-----~~~~~---~~~~~~~~v~~l~~~p~~~~~l~~~~~ 441 (601)
...|.-|+++.. ..... ++.........|+|.| |+.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 235666665432 11111 2221113578999999 9987776654
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.86 E-value=0.89 Score=50.20 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=132.2
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 263 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 263 (601)
.++.-. ..++.++++.+..++..+.... .|.-..|-.+..+-..+...+.-|++.....
T Consensus 79 iiALra-g~~lQiFnl~~k~klks~~~~e--------~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~------------ 137 (1630)
T 1xi4_A 79 VIALKA-GKTLQIFNIEMKSKMKAHTMTD--------DVTFWKWISLNTVALVTDNAVYHWSMEGESQ------------ 137 (1630)
T ss_pred eEEEec-CCeEEEeehHHhhhhcccccCC--------CceEEEecCCCeeEEEcCCeEEEeccCCCCc------------
Confidence 444443 6799999999877776665321 1222234444455555668899999864221
Q ss_pred cceEEEE-EecCCCCeEEEEEcCCCCEEEE-E-------cCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEc-
Q 007489 264 TSLLVQV-KSKASRKIICSTISNSGMLFAY-S-------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS- 333 (601)
Q Consensus 264 ~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~-~-------~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s- 333 (601)
|.++... ..-....|..-..+++.+|++. | -.|.+.+|.... .. .+.+.+|......+...
T Consensus 138 P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er---~~------sQ~iegha~~F~~~~~~~ 208 (1630)
T 1xi4_A 138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KV------SQPIEGHAASFAQFKMEG 208 (1630)
T ss_pred cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc---cc------chhhhHhHhhhheeccCC
Confidence 1111111 0011366888888999998876 4 125667777764 11 13345554433333221
Q ss_pred -c-CCCeEEEEec---CCcEEEEEcCCC-ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcC
Q 007489 334 -Y-DSSQLIIAGH---DRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 407 (601)
Q Consensus 334 -~-d~~~l~~~~~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~ 407 (601)
+ ....++.+.. .+.++|.++... .--..|......-.-......+-..++..|+.-..+..-+.-|.|++||+.
T Consensus 209 ~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 209 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 1 1223333332 268899888432 111111100000000000134456678888888889999999999999999
Q ss_pred CceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 007489 408 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE 457 (601)
Q Consensus 408 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 457 (601)
++.++.. .+..+.+|...+-+. ...=++.....|.|.--.++...+.+
T Consensus 289 t~~~i~~-~ris~~~iF~~~~~~-~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 289 TGTCIYM-NRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred cchhhhh-ccccCCceEEeccCC-CCCceEEEcCCceEEEEEEccchhhh
Confidence 9987632 223334555444444 22335555577877777777665544
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.75 E-value=1.6 Score=48.27 Aligned_cols=221 Identities=8% Similarity=0.040 Sum_probs=127.4
Q ss_pred CCeEEEEeccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEe-CCeeEEeeccccCCcccCCCCCCCCCcceEEE
Q 007489 191 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQ 269 (601)
Q Consensus 191 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (601)
...|.+.|+.........+ ..+-+...+|...+++-. +..+.|+++.+.. .+..
T Consensus 47 ~~~vvIidl~~~~~~~rrp----------i~AdsAIMnP~~~iiALrag~~lQiFnl~~k~---------------klks 101 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP----------ISADSAIMNPASKVIALKAGKTLQIFNIEMKS---------------KMKA 101 (1630)
T ss_pred CceEEEEECCCCCCccccc----------ccchhhccCCCcceEEEecCCeEEEeehHHhh---------------hhcc
Confidence 3488888988744332222 233345577777777654 4789999998665 2223
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-----
Q 007489 270 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH----- 344 (601)
Q Consensus 270 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~----- 344 (601)
.... ..|.--.|-. .+.|+.-++..|+-|++.......++++.. ..+. ...|..-..+++.++++..+-
T Consensus 102 ~~~~--e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 102 HTMT--DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred cccC--CCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 3332 3455555543 345666677789999996422333332221 1122 346677778888888765442
Q ss_pred --CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEc---cCCCEEEEEec---CCeEEEEEcCCc---eEE-
Q 007489 345 --DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS---SDGQWLAAVNC---FGDVYIFNLEIQ---RQH- 412 (601)
Q Consensus 345 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---pd~~~las~~~---dg~i~iwd~~~~---~~~- 412 (601)
.|.+.+|..+. +..+.+.+ |...-..+... +..+.++.+.. .+.++|.++... ...
T Consensus 176 ~v~G~mQLyS~er-~~sQ~ieg-----------ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 176 RVVGAMQLYSVDR-KVSQPIEG-----------HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred cccceeeeeeccc-ccchhhhH-----------hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 47889998764 33344444 32222222221 11122222221 268899888543 110
Q ss_pred ----EEee---ccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 413 ----WFIS---RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 413 ----~~~~---~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
..+. .....-+.+|..++ ....+...+.-|.|++||++++.+
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchh
Confidence 0011 11124466788888 888899999999999999999874
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.73 E-value=0.77 Score=43.23 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=28.1
Q ss_pred eEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCC------eEEEEEcCCCCc
Q 007489 400 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN------QVYVFDVEAKQL 455 (601)
Q Consensus 400 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~ 455 (601)
.+.+||+.+.+.... .........+.+..- ++++++.|+.++ .|.++++++++.
T Consensus 286 ~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKS-GELSQGRAYGVSLPW-NNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEE-EECSSCCBSSEEEEE-TTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeC-CCCCCCcccceeEEe-CCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 578999987765432 222211111112223 678888888652 467778888774
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.67 E-value=1.3 Score=40.69 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=38.9
Q ss_pred CCCeEEEEecC-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEEEE
Q 007489 335 DSSQLIIAGHD-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVYIF 404 (601)
Q Consensus 335 d~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~iw 404 (601)
++++++.|+.+ ..+.+||+.+.+-.. +.... ........+.+ ++++++.|+.+ ..+.+|
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p--------~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 283 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMK--------HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECY 283 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCS--------SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCC--------CCccceEEEEE--CCEEEEEcCcCCCcccceEEEE
Confidence 67777777664 468999987664321 11100 01112222233 67777887754 458899
Q ss_pred EcCCceEE
Q 007489 405 NLEIQRQH 412 (601)
Q Consensus 405 d~~~~~~~ 412 (601)
|+.+.+..
T Consensus 284 d~~~~~W~ 291 (308)
T 1zgk_A 284 DPDTDTWS 291 (308)
T ss_dssp ETTTTEEE
T ss_pred cCCCCEEe
Confidence 99887654
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.59 E-value=1.4 Score=40.58 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=59.4
Q ss_pred cCCCeEEEEec-C-----CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC-----eEE
Q 007489 334 YDSSQLIIAGH-D-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-----DVY 402 (601)
Q Consensus 334 ~d~~~l~~~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg-----~i~ 402 (601)
-+++.++.|+. + ..+.+||..+.+-.. +.... .....-..+.+ ++++++.|+.++ .+.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p--------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQ--------TARSLFGATVH--DGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCS--------SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCC--------CchhceEEEEE--CCEEEEEeccCCCCccceEE
Confidence 46667777776 2 468999987654221 11100 01111222233 777888887654 588
Q ss_pred EEEcCCceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC--------------CeEEEEEcCCCC
Q 007489 403 IFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS--------------NQVYVFDVEAKQ 454 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d--------------g~v~vwd~~~~~ 454 (601)
+||+.+.+.... ..... ..-.+++.. ++.+++.|+.+ ..+.+||+++.+
T Consensus 216 ~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 216 VYSITDNKWAPF-EAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCeEEEC-CCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 999988765533 22221 111223332 56777777753 247788888764
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.54 E-value=0.13 Score=43.67 Aligned_cols=158 Identities=11% Similarity=0.065 Sum_probs=82.8
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
.+..++|+|+|.+.++ .+|.++-.+..+.+...-+....... . .+-. .-.++.|.|+|.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG--~-~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIG--N-GGWN-QFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEE--C-SCGG-GCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEec--c-cccc-cceEEEECCCCCEEEe--CCCEEEEeC
Confidence 6679999999987666 67876666654322110000000000 0 0011 1378999999998888 569888776
Q ss_pred cCCc-eEEE-----EeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCcccchhcccCCcCcccc-cCCCcEE
Q 007489 406 LEIQ-RQHW-----FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ-EFPGEVI 478 (601)
Q Consensus 406 ~~~~-~~~~-----~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 478 (601)
-.+. ...+ .+-...-..+..|.|.| ++.+.++. |+.++-.....+.-..|....+ .+. ..-..-.
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~-----~~g~~g~~~yr 185 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARAT-----KIGQGGWDTFK 185 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCE-----EEESSSGGGEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccc-----eeccCCcceEE
Confidence 5321 1110 11111114689999999 88755555 8876554444444344432111 111 1112344
Q ss_pred EEEeCCCCCCCEEEEEcCceEEEE
Q 007489 479 GLSFSPSPSSSSVIIYSARAMCVI 502 (601)
Q Consensus 479 ~i~~~p~~~~~~~~~~~~~~~~~~ 502 (601)
-+.|.|+ ..|+......++..
T Consensus 186 ~l~f~~~---G~l~~v~~g~~Y~~ 206 (236)
T 1tl2_A 186 FLFFSSV---GTLFGVQGGKFYED 206 (236)
T ss_dssp EEEECTT---SCEEEEETTEEEEE
T ss_pred EEEECCC---CcEEEEeCCeEEec
Confidence 5678887 34444444445544
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.90 E-value=2.3 Score=39.08 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=39.1
Q ss_pred CCCeEEEEecCC-----cEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----------
Q 007489 335 DSSQLIIAGHDR-----RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF----------- 398 (601)
Q Consensus 335 d~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d----------- 398 (601)
+++.++.|+.++ .+.+||+.+.+-... .... ........+.+ ++++++.|+.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p--------~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~ 264 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EAFP--------QERSSLSLVSL--VGTLYAIGGFATLETESGELVP 264 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CCCS--------SCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEEC-CCCC--------CcccceeEEEE--CCEEEEECCccccCcCCccccc
Confidence 677777777654 488899876643221 1100 01111222333 67777777754
Q ss_pred ---CeEEEEEcCCceEEEE
Q 007489 399 ---GDVYIFNLEIQRQHWF 414 (601)
Q Consensus 399 ---g~i~iwd~~~~~~~~~ 414 (601)
..|.+||+++.+....
T Consensus 265 ~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 265 TELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEEETTTTEEEEE
T ss_pred cccCcEEEecCCCChhhhh
Confidence 2477888888765433
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.86 E-value=3.9 Score=37.55 Aligned_cols=107 Identities=11% Similarity=0.213 Sum_probs=58.5
Q ss_pred cCCCeEEEEec------CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC-----CeEE
Q 007489 334 YDSSQLIIAGH------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----GDVY 402 (601)
Q Consensus 334 ~d~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d-----g~i~ 402 (601)
.+++.++.|+. -..+.+||..+.+-... ..... .......+.+ ++++++.|+.+ ..+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 225 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-APMKT--------PRSMFGVAIH--KGKIVIAGGVTEDGLSASVE 225 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-CCCSS--------CCBSCEEEEE--TTEEEEEEEEETTEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-CCCCC--------CcccceEEEE--CCEEEEEcCcCCCCccceEE
Confidence 46767777764 23589999877643221 11000 1111222333 67777777643 3578
Q ss_pred EEEcCCceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC--------------CeEEEEEcCCCC
Q 007489 403 IFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS--------------NQVYVFDVEAKQ 454 (601)
Q Consensus 403 iwd~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d--------------g~v~vwd~~~~~ 454 (601)
+||+.+.+... +..... ..-.+++.. ++.+++.|+.+ ..+.+||+++.+
T Consensus 226 ~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 226 AFDLKTNKWEV-MTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEETTTCCEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred EEECCCCeEEE-CCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 99998876543 222221 111223332 56777777653 458889988764
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.40 E-value=4.5 Score=36.83 Aligned_cols=142 Identities=11% Similarity=0.148 Sum_probs=84.0
Q ss_pred EEEEcCCCCEEEEE-cCC------------ccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEe--c
Q 007489 280 CSTISNSGMLFAYS-DHV------------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--H 344 (601)
Q Consensus 280 ~~~~s~~g~~l~~~-~~~------------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~--~ 344 (601)
+.-++++|.+|..+ ... .-.||.+......... +. . -....|++++++|+... .
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--l~-----~----~~~~~~s~~g~~Iy~~~~~~ 125 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--LD-----P----DPCIYASLIGNYIYYLHYDT 125 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--EE-----C----SCEEEEEEETTEEEEEEESS
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--ee-----c----CCccEEEEeCCEEEEEeecC
Confidence 34567899999884 221 3455655542121111 11 1 12336788999988776 2
Q ss_pred --CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec-CCeEEEEEcCCceEEEEeeccCCC
Q 007489 345 --DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGA 421 (601)
Q Consensus 345 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 421 (601)
+..|+..++. +.....+.. +.. .+++|+++.|+-.+. ...|.+.+++++.....+. +
T Consensus 126 ~~~~~Iy~~~~d-Gs~~~~lt~-----------~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~- 185 (302)
T 3s25_A 126 QTATSLYRIRID-GEEKKKIKN-----------HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C- 185 (302)
T ss_dssp SSCEEEEEEETT-SCCCEEEES-----------SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S-
T ss_pred CCCceEEEEECC-CCCeEEEeC-----------CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C-
Confidence 3456666665 333444443 222 456889999987665 6789999988877653332 1
Q ss_pred ceeEEEecCCCCCEEEEEeCC--CeEEEEEcCCCC
Q 007489 422 SVTAAGFPPQNNNVLIITTSS--NQVYVFDVEAKQ 454 (601)
Q Consensus 422 ~v~~l~~~p~~~~~l~~~~~d--g~v~vwd~~~~~ 454 (601)
... ..++| ++.+|+-.... ..|..-++++..
T Consensus 186 ~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 186 NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCC
Confidence 222 34668 88888877644 367777777665
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.12 Score=47.85 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=84.7
Q ss_pred CCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEE---EccCCCeEEEE-ecCCcEEEEEcCCCceeeee
Q 007489 287 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMI---FSYDSSQLIIA-GHDRRIYVVDVSSSELLHTF 362 (601)
Q Consensus 287 g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~s~d~~~l~~~-~~dg~i~vwd~~~~~~~~~~ 362 (601)
+..++.+.||.+.-+|..+ +..+|+.....+ .+.+ ... ...++..++.. +.||.|..++..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~t---G~~~W~~~~~~~---~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN---GHIIWSIEPENF---QPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTT---TEEEEEECGGGS---CCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCC---CcEEEEecCCcc---CCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 3344557888888888765 888888764310 1111 100 00123333333 57999999998888654444
Q ss_pred ccCcccccccCCCCCCCeeE---EEE-----ccCCCEEEEEecCCeEEEEEcCCceEEEEeeccCCCc------eeEEE-
Q 007489 363 TPCREEHDREIQPSEPPITK---MFT-----SSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS------VTAAG- 427 (601)
Q Consensus 363 ~~~~~~~~~~~~~~~~~i~~---l~~-----spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~------v~~l~- 427 (601)
...... ...++.. ... +..+..+++|+.+|++...|+.+|+..+.+....... ..+..
T Consensus 84 ~~~~lv-------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 84 SIRQLV-------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp EHHHHH-------TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred ccccce-------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence 321100 1111211 000 1145678899999999999999999998876431101 00111
Q ss_pred --ecC-CCCCEEEEEeCCCeEEEEEcCCCCcccch
Q 007489 428 --FPP-QNNNVLIITTSSNQVYVFDVEAKQLGEWS 459 (601)
Q Consensus 428 --~~p-~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 459 (601)
+.. ..+..|+.+..+..+.+.+ .+++ .|.
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~--~W~ 188 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS-YDGA--SYN 188 (339)
T ss_dssp --------CCEEEEEEEEEECEECC-TTSC--CCC
T ss_pred cccccccCCCeEEEecceEEEEEEC-CCCC--eEE
Confidence 100 0245788888777777777 4443 454
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.42 E-value=8.1 Score=35.11 Aligned_cols=141 Identities=10% Similarity=0.114 Sum_probs=86.6
Q ss_pred EEEcCCCCEEEEEc---CCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec-CCcEEEEEcCCC
Q 007489 281 STISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSS 356 (601)
Q Consensus 281 ~~~s~~g~~l~~~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~ 356 (601)
..+++++++|+... ++.-.||.+... +...-.+.. +. + .+++++++.|+-.+. ...|.+.++..+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~lt~-----~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKKIKN-----HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETT--SCCCEEEES-----SC--C--CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECC--CCCeEEEeC-----CC--c--eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence 36778999988854 677778888762 222211221 11 1 356788988887665 567888888755
Q ss_pred ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecC--CeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCC
Q 007489 357 ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF--GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN 434 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 434 (601)
.....+.+ .. ...++|++.+|+-.... ..|..-++++.... .+. ...+ ..|+| ++.
T Consensus 178 ~~~~l~~~--------------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt---~~~~--~~~~~-~g~ 235 (302)
T 3s25_A 178 SEALFYDC--------------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT---EANI--EHYNV-YGS 235 (302)
T ss_dssp EEEEEECS--------------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS---CSCE--EEEEE-ETT
T ss_pred CEEEEeCC--------------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe---CCCc--ceEEE-CCC
Confidence 54333332 11 23466999999877654 36777777776643 232 1233 34788 788
Q ss_pred EEEEEeC--CCeEEEEEcCCCC
Q 007489 435 VLIITTS--SNQVYVFDVEAKQ 454 (601)
Q Consensus 435 ~l~~~~~--dg~v~vwd~~~~~ 454 (601)
+|.-+.. .+.|..-+++...
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEECCCCcEEEEEECCCCc
Confidence 8876632 4677777777654
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.34 E-value=3.4 Score=40.31 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCC--EEEEEcCCccEEEEeecCCCCcceEEEeeecCC----cCccceeEEEEccC----CCeEEEEecC
Q 007489 276 RKIICSTISNSGM--LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP----RKLQFAHSMIFSYD----SSQLIIAGHD 345 (601)
Q Consensus 276 ~~i~~~~~s~~g~--~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~i~~s~d----~~~l~~~~~d 345 (601)
.....++|.|+|. ++++...+.|++++.........+..+...... ........|+|+|+ +.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 5678999999995 888888888888854321011122222111111 12456788999996 4333333321
Q ss_pred ------------CcEEEEEcCCC----------ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec
Q 007489 346 ------------RRIYVVDVSSS----------ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 397 (601)
Q Consensus 346 ------------g~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~ 397 (601)
..|.-|.+..+ +.+..+... . .......|+|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-------~--~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-------H--RKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-------S--SSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-------C--CcccCCcEeECCCCcEEEEeCC
Confidence 13444665421 122222110 0 1234678999999987666544
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.23 E-value=0.57 Score=43.38 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=67.9
Q ss_pred CeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEE--Ecc-CCCEEEEE-ecCCeEEEEEcCCceEE
Q 007489 337 SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF--TSS-DGQWLAAV-NCFGDVYIFNLEIQRQH 412 (601)
Q Consensus 337 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--~sp-d~~~las~-~~dg~i~iwd~~~~~~~ 412 (601)
..+++++.||.|.-+|..+|+.+.++.... ..++.... -.+ ++..++.. +.||.|+.++..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~----------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN----------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG----------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc----------cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 368889999999999999999998887520 01111100 001 33333333 58999999999888766
Q ss_pred EEeecc---CCCceeE---EEe-----cCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 413 WFISRL---EGASVTA---AGF-----PPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 413 ~~~~~~---~~~~v~~---l~~-----~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
+.+... ..+++.. ... +. .+..+++++.+|.++..|+.+|+.
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred eeeccccceeccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcE
Confidence 544321 1112221 000 01 345788999999999999999985
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.54 E-value=1.8 Score=42.63 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=53.7
Q ss_pred CCCeeEEEEccCCCEEEEEe-cCCeEEEEEcCCceE-------------EEEeeccCCCceeEEEecCCCCCEEEEEeCC
Q 007489 377 EPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ-------------HWFISRLEGASVTAAGFPPQNNNVLIITTSS 442 (601)
Q Consensus 377 ~~~i~~l~~spd~~~las~~-~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~d 442 (601)
......+.++|||++++.++ .+.++.|+|++.... ...++ -+..+.+.+|.+ +|....+-.-|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~-~G~aYTtlfid 398 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDG-RGNAYTTLFID 398 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECS-SSEEEEEETTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECC-CCceEeeeeec
Confidence 34566789999999988765 688999999874211 21222 346788999999 88555555689
Q ss_pred CeEEEEEcCC
Q 007489 443 NQVYVFDVEA 452 (601)
Q Consensus 443 g~v~vwd~~~ 452 (601)
.+|.-|+++.
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999975
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.75 E-value=5.2 Score=39.41 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=65.9
Q ss_pred ceeEEEEccCCCeEEEEec-CCcEEEEEcCCCceee--ee-ccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 326 FAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLH--TF-TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~-dg~i~vwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
....+.++|||+++++++. +.++.++|+....... .+ .. +.....+.+ ..-.....+|.++|.-..+.-.|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~-~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP-RDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG-GGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc-ccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence 4467889999999887665 7889999986421100 00 00 000000000 34456789999999555566689999
Q ss_pred EEEEcCCc----------eEEEEeeccCCCceeEEEe------cCCCCCEEEEEe
Q 007489 402 YIFNLEIQ----------RQHWFISRLEGASVTAAGF------PPQNNNVLIITT 440 (601)
Q Consensus 402 ~iwd~~~~----------~~~~~~~~~~~~~v~~l~~------~p~~~~~l~~~~ 440 (601)
.-|+++.. ..+..+..+ -.+-++.- .| +|++|++..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~--YqpGH~~~~~get~~~-dGk~lv~ln 453 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVH--YQPGHLHASLCETNEA-DGKWLVALS 453 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECS--SCEEEEEETTTTSTTC-CSCEEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccc--cCCcccccCCCccCCC-CccEEEEec
Confidence 99999754 233333322 13344433 46 788888874
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.59 E-value=29 Score=36.01 Aligned_cols=151 Identities=11% Similarity=0.193 Sum_probs=82.4
Q ss_pred CCCCEEEEE-c----CCccEEEEeecCCCCcceEEEeeec-----CCcCccceeEEEEcc-CCCeEEEEecC------Cc
Q 007489 285 NSGMLFAYS-D----HVKPSLFELKKGKVGQGEWIINKRQ-----LPRKLQFAHSMIFSY-DSSQLIIAGHD------RR 347 (601)
Q Consensus 285 ~~g~~l~~~-~----~~~v~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~s~-d~~~l~~~~~d------g~ 347 (601)
.++.+++.| . ...+.+||... ..|...... ++..... .+++..+ +++.++.|+.+ ..
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~-----~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~d 469 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHY-----DKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSD 469 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECS-----SCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCC-----CeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCcccc
Confidence 455666663 3 23566777654 235443211 2221222 2333333 77777877754 35
Q ss_pred EEEEEcCCCce--eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCC--eEEEEEcCCceEEEEeec--c--C
Q 007489 348 IYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG--DVYIFNLEIQRQHWFISR--L--E 419 (601)
Q Consensus 348 i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg--~i~iwd~~~~~~~~~~~~--~--~ 419 (601)
+.+||..+.+- +..+.. ...-.+++.-.++++++.|+.++ .+.+||+.+.+....-.. . .
T Consensus 470 v~~yd~~t~~W~~~~~~p~------------~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 537 (695)
T 2zwa_A 470 NWIFDMKTREWSMIKSLSH------------TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN 537 (695)
T ss_dssp CEEEETTTTEEEECCCCSB------------CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS
T ss_pred EEEEeCCCCcEEECCCCCC------------CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc
Confidence 88899876542 211111 11122333324888888887654 699999988775432210 1 1
Q ss_pred CCceeEEEecCCC-CCEEEEEeC--C-----CeEEEEEcCCCC
Q 007489 420 GASVTAAGFPPQN-NNVLIITTS--S-----NQVYVFDVEAKQ 454 (601)
Q Consensus 420 ~~~v~~l~~~p~~-~~~l~~~~~--d-----g~v~vwd~~~~~ 454 (601)
.....++.+.. + +.+++.|+. + +.+.+||+.+.+
T Consensus 538 r~~~~a~v~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 538 SLVSAGLEFDP-VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBSCEEEEET-TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ccceeEEEEeC-CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 12233456665 4 667777765 2 469999998876
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.83 E-value=27 Score=33.04 Aligned_cols=172 Identities=12% Similarity=0.102 Sum_probs=82.5
Q ss_pred cceeEEEEcc-CCCeEEEEecCC----cEEEEEcCCCceeeeeccCcccccccCCC----CCCCeeEEEEccC--CCEEE
Q 007489 325 QFAHSMIFSY-DSSQLIIAGHDR----RIYVVDVSSSELLHTFTPCREEHDREIQP----SEPPITKMFTSSD--GQWLA 393 (601)
Q Consensus 325 ~~v~~i~~s~-d~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~spd--~~~la 393 (601)
..|.+|++.| +...|.++...| .|...+ ..++.-..+........ .... ....|.+++++|. ...|.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNK-APEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCC-CC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCC-cccccccccccceeEEEeCCCCCCCEEE
Confidence 4689999998 334455555554 343332 32332222211000000 0000 1135788999872 45555
Q ss_pred EEecCCeEEEEEcCCceEEEEeec------------------cCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 007489 394 AVNCFGDVYIFNLEIQRQHWFISR------------------LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 455 (601)
Q Consensus 394 s~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 455 (601)
++...+.|...+ +.++....+.. .....+.+|.+.|.+...|.++..++.|+..+ +.+
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG-- 208 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAG-- 208 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STT--
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCC--
Confidence 555556554443 22222212211 11235788999873345566666555544432 222
Q ss_pred ccchhcccC----CcCcccccCCCcEEEEEeCCCCCCCEEEEEcCceEEEEe
Q 007489 456 GEWSMQHTF----VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 503 (601)
Q Consensus 456 ~~~~~~~~~----~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~~ 503 (601)
..|...... .++.........+..|+++|. .++.+++....++++.+
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~-~~~~l~vg~~~gl~~s~ 259 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPA-APDILYQQNHCGIYRMD 259 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSS-STTEEEEEETTEEEEEE
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCC-CCCEEEEEcCCeEEEeC
Confidence 234332210 011100001135889999987 56788887777777654
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.82 E-value=43 Score=34.65 Aligned_cols=114 Identities=6% Similarity=0.012 Sum_probs=58.9
Q ss_pred CCCEEEE-EcCC--ccEEEEeecCCCCcceEEEeee--cCCcCccceeEEEEccC-CCeEEEEec--C-----CcEEEEE
Q 007489 286 SGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKR--QLPRKLQFAHSMIFSYD-SSQLIIAGH--D-----RRIYVVD 352 (601)
Q Consensus 286 ~g~~l~~-~~~~--~v~l~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~s~d-~~~l~~~~~--d-----g~i~vwd 352 (601)
++++++. |.++ .+.+||... ..|..... .++.......++.+..+ ++.++.|+. + ..+.+||
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t-----~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 574 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTE-----EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFK 574 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTT-----TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCC-----CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEE
Confidence 6666666 3222 566666653 34654322 12222222334555555 667777765 2 4588999
Q ss_pred cCCCce-----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec--------CCeEEEEEcCCceEE
Q 007489 353 VSSSEL-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--------FGDVYIFNLEIQRQH 412 (601)
Q Consensus 353 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~--------dg~i~iwd~~~~~~~ 412 (601)
+.+.+- -..+..... ....-.+++...++++++.|+. ...|.+||+.+.+..
T Consensus 575 ~~~~~w~~~~~W~~~~~~p~--------~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 575 YDAENATEPITVIKKLQHPL--------FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp ECTTCSSCCEEEEEEEECGG--------GCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ccCCccccceEEEEcCCCCC--------CCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 876651 111111000 1111122333333777777774 346999999988764
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=80.82 E-value=33 Score=31.15 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCCeEEEEecC-------CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEec------CCeE
Q 007489 335 DSSQLIIAGHD-------RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDV 401 (601)
Q Consensus 335 d~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~------dg~i 401 (601)
+++.++.|+.+ ..+.+||..+.+-...-..+. ....-..+. .++++++.|+. -..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI---------KVYGHNVIS--HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS---------CEESCEEEE--ETTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC---------cccccEEEE--ECCEEEEEcCCCCCCCccceE
Confidence 66777777754 248888887654322111100 111111222 47777777764 2359
Q ss_pred EEEEcCCceEEEEeeccCC-CceeEEEecCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 007489 402 YIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS-----NQVYVFDVEAKQ 454 (601)
Q Consensus 402 ~iwd~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~ 454 (601)
.+||+.+.+.... +.... ..-.+++.. ++.+++.|+.+ ..+.+||+++.+
T Consensus 178 ~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 178 FIYNPKKGDWKDL-APMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEcCCCCEEEEC-CCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 9999988775433 22221 111233333 56777777653 357889998865
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=78.09 E-value=7.9 Score=38.86 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=46.4
Q ss_pred CeeEEEEccCCCEEEEEecC------------CeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEE
Q 007489 379 PITKMFTSSDGQWLAAVNCF------------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 379 ~i~~l~~spd~~~las~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
..-.|+|+|+|++++.-+.+ ..+.+.+..+++....+....+..++.++|+| |++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 45679999999977765532 34667777788877777666678999999999 98888766
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=76.02 E-value=53 Score=30.93 Aligned_cols=68 Identities=16% Similarity=0.017 Sum_probs=36.5
Q ss_pred ceEEEEEEEee--CCeEEEEcCCC----cEEEeeC--Cccchhhh---ccc--------cccceEEEEEeC-C-CCEEEE
Q 007489 37 ELCIWSLLSLR--CGTLVSADSTG----SVQFWDS--RHGTLLQA---HSF--------HKGDVNALAAAP-S-HNRVFS 95 (601)
Q Consensus 37 ~~~V~~v~~s~--~g~l~s~~~dg----~i~vwd~--~~~~~~~~---~~~--------h~~~V~~l~~s~-~-~~~l~s 95 (601)
...|.+|++.| ++.|..+...| .|...+- .+.+.+.. +.. +...|.++++.| + ...|+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 35699999998 55555555444 3443321 11122211 111 113588899987 3 566777
Q ss_pred EeeCCeEEE
Q 007489 96 TGSDGQVIL 104 (601)
Q Consensus 96 ~~~dg~i~v 104 (601)
++..+.|..
T Consensus 134 g~~~ggl~~ 142 (394)
T 3b7f_A 134 GTSPQGLFR 142 (394)
T ss_dssp EEETTEEEE
T ss_pred EecCCcEEE
Confidence 776665443
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=75.19 E-value=15 Score=36.57 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCeeEEEEccCCCEEEEEec------------CCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEe
Q 007489 378 PPITKMFTSSDGQWLAAVNC------------FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 440 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~ 440 (601)
.....|+|+++|.+.+..+. ...|..++..+++....+.......++.++|+| |++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 45778999999997774432 225777777778876666544456899999999 998887774
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.90 E-value=68 Score=31.14 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=35.4
Q ss_pred eEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccc---hhhhc----c-----ccccceEEEEEeCC
Q 007489 38 LCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT---LLQAH----S-----FHKGDVNALAAAPS 89 (601)
Q Consensus 38 ~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~---~~~~~----~-----~h~~~V~~l~~s~~ 89 (601)
..-+.|+|.||| +|+.+...|.|++++..... .+..+ . ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 346899999998 48778889999999754221 11111 1 11457889999996
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=71.69 E-value=11 Score=37.86 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=42.2
Q ss_pred ceeEEEEccCCCeEEEEecC------------CcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEE
Q 007489 326 FAHSMIFSYDSSQLIIAGHD------------RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA 393 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~la 393 (601)
..-.|+|+|.|.+++.-..+ ..+.+.+..++++.+-+..+ ....++.++|+||++.|.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P----------~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP----------IGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC----------TTCEEEEEEECTTSSEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC----------CCccCcCeeECCCCCEEE
Confidence 34678999999865543322 23566666777776666553 567899999999999887
Q ss_pred EE
Q 007489 394 AV 395 (601)
Q Consensus 394 s~ 395 (601)
+.
T Consensus 547 vn 548 (592)
T 3zwu_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 356
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=67.97 E-value=81 Score=29.64 Aligned_cols=252 Identities=12% Similarity=0.023 Sum_probs=112.2
Q ss_pred EEEEecCCCeEEEEeccccCCcCCCccCC--CCCcc---ceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCC
Q 007489 184 MLISAGDDTKLFAYCANEFTKFSPHEICP--APQRV---PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 258 (601)
Q Consensus 184 ~l~s~~~d~~v~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 258 (601)
.++.-..||.|+.|=.+...++-...... .|... ....+..++......+++..++.+..|=.+...... .
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG----~ 87 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLG----I 87 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTS----S
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCC----C
Confidence 67777889999999766544332110000 00000 000122333334444556666777777543221110 0
Q ss_pred CCCCCcceEEEEEecCCCCeEEEEEcCCCCE-EEEEcCCccEEEEeecCCC-----CcceEEEeeecCCcC-ccceeEEE
Q 007489 259 GGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDHVKPSLFELKKGKV-----GQGEWIINKRQLPRK-LQFAHSMI 331 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~v~l~~~~~~~~-----~~~~~~~~~~~~~~~-~~~v~~i~ 331 (601)
...........+.......+..++++..... ++...++.|+.|-...... ......+ ..+... ...|..|+
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p--~~v~~l~~~~i~~va 165 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRP--RVIESLRGIEVVDVA 165 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE--EECGGGTTSCEEEEE
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCC--eEecccCCCeEEEEE
Confidence 0000000111111112334555666655444 4447888888886543110 0011111 111111 12455554
Q ss_pred EccCCCeEEEEecCCcEEEEEcCC-Cce-----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEE
Q 007489 332 FSYDSSQLIIAGHDRRIYVVDVSS-SEL-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 405 (601)
Q Consensus 332 ~s~d~~~l~~~~~dg~i~vwd~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd 405 (601)
. .....++-..+|.|+.|=... +++ .....+.. .. ......|..++......+.++-..||.|+.|-
T Consensus 166 ~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~---v~--~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 166 A--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL---VE--ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp E--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE---CG--GGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred e--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceE---ec--ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 4 344556667899999997532 111 00000000 00 00234577777655446677778899999996
Q ss_pred cCCc-----------eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcC
Q 007489 406 LEIQ-----------RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 451 (601)
Q Consensus 406 ~~~~-----------~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~ 451 (601)
.... .....+..+....|..++... .+.++-..||.|+.|-..
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS---QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET---TEEEEEETTSCEEEEECC
T ss_pred CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC---CEEEEEeCCCeEEEEeCC
Confidence 4321 111122333334577766643 456666789999999864
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.33 E-value=1.4e+02 Score=32.19 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=48.5
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEeeccC----CCceeEEEecCCCCCEEEEE---eCCCeEEEEEc
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE----GASVTAAGFPPQNNNVLIIT---TSSNQVYVFDV 450 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~l~~~p~~~~~l~~~---~~dg~v~vwd~ 450 (601)
..+.+++..++..++++-+.|++++||++.++++..+..-.. ..........|..+.++.+. ..+|..++|.+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 457788888899999999999999999999999876643211 01111222334234444443 24578888876
Q ss_pred C
Q 007489 451 E 451 (601)
Q Consensus 451 ~ 451 (601)
.
T Consensus 316 ~ 316 (950)
T 4gq2_M 316 N 316 (950)
T ss_dssp E
T ss_pred e
Confidence 4
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.88 E-value=88 Score=29.29 Aligned_cols=152 Identities=7% Similarity=-0.048 Sum_probs=78.8
Q ss_pred CCeEEEEEc---CC----CCEEEE--EcCCccEEEEeecCCCCcceEEEeeecCCcC--------------ccceeEEEE
Q 007489 276 RKIICSTIS---NS----GMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRK--------------LQFAHSMIF 332 (601)
Q Consensus 276 ~~i~~~~~s---~~----g~~l~~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~i~~ 332 (601)
..+..+++. |+ +.++.. .....|.+||+.. ...|.+....+... ...+..|++
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~----~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaL 227 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK----QDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITL 227 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT----TEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEE
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC----CcEEEEccCCCccccCcceEECCEEeEeccCceEEEe
Confidence 456677776 22 223333 3567788898874 33455543221111 136888999
Q ss_pred ccC----CCeEEEEecCCcEEEEEcCC-----CceeeeeccCcccccccCCCCCCCeeEEEEc-cCCCEEEEEecCCeEE
Q 007489 333 SYD----SSQLIIAGHDRRIYVVDVSS-----SELLHTFTPCREEHDREIQPSEPPITKMFTS-SDGQWLAAVNCFGDVY 402 (601)
Q Consensus 333 s~d----~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd~~~las~~~dg~i~ 402 (601)
+|+ ++.|......+ -++|.+.+ ......++.. ...+....-..+++. .+|.++++--....|.
T Consensus 228 sp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~------G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~ 300 (381)
T 3q6k_A 228 GDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL------GNRGKYNDAIALAYDPKTKVIFFAEANTKQVS 300 (381)
T ss_dssp CCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE------EECCTTCCEEEEEECTTTCEEEEEESSSSEEE
T ss_pred cCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe------eecCCCCCcceEEEeCCCCeEEEEeccCCeEE
Confidence 998 77777766555 23444322 1111111100 000112334456775 5777777777888899
Q ss_pred EEEcCC-----ceEEEEeeccCCCceeEEEecCCCCCEEEEE
Q 007489 403 IFNLEI-----QRQHWFISRLEGASVTAAGFPPQNNNVLIIT 439 (601)
Q Consensus 403 iwd~~~-----~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~ 439 (601)
.|+..+ ...........-..+..+.+.+ ++.+.+.+
T Consensus 301 ~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~s 341 (381)
T 3q6k_A 301 CWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMS 341 (381)
T ss_dssp EEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEE
T ss_pred EEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEE
Confidence 999876 1222122211113466677666 55544444
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=65.47 E-value=74 Score=28.28 Aligned_cols=107 Identities=7% Similarity=-0.059 Sum_probs=56.6
Q ss_pred cceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEE
Q 007489 325 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 404 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iw 404 (601)
..|..++...+. .+.-. ||.|+.|-......+..-.. ....|..++...+ +.++- .||.|+.|
T Consensus 141 ~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~-----------~~~~v~~i~~G~~--hs~al-~~G~v~~w 203 (282)
T 3qhy_B 141 SGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAE-----------AQSGVDDVAGGIF--HSLAL-KDGKVIAW 203 (282)
T ss_dssp SSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGG-----------GGSSEEEEEECSS--EEEEE-ETTEEEEE
T ss_pred CCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCcee-----------cCCCeEEEEecCC--EEEEE-ECCeEEEE
Confidence 356666554332 22233 79999997643221111000 2345777776444 33333 59999999
Q ss_pred EcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 405 NLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 405 d~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
=....... -++......|..++-.. ...++.. ||.|+.|--...
T Consensus 204 G~n~~gql-g~p~~~~~~v~~i~~G~--~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 204 GDNRYKQT-TVPTEALSGVSAIASGE--WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp ECCTTSTT-CCCGGGGSSCCEEEECS--SCEEEEE--TTEEEEESTTCC
T ss_pred ECCCCCCC-CCCcccCCCceEEEcCC--CEEEEEE--CCEEEEecCCCC
Confidence 76433211 11211124677777654 3334444 999999976543
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=64.75 E-value=26 Score=34.86 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=42.2
Q ss_pred cceeEEEEccCCCeEEEEec------------CCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEE
Q 007489 325 QFAHSMIFSYDSSQLIIAGH------------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 392 (601)
Q Consensus 325 ~~v~~i~~s~d~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~l 392 (601)
.....|.|.++|.+.+.... ...|..++..++++...+... ....++.++||||++.|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P----------~~aEpnGiafSPD~ktL 545 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP----------IGCEVTGISFSPDQKTL 545 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC----------TTCEEEEEEECTTSSEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC----------CCccccCCEECCCCCEE
Confidence 45678999999977663322 124666676677765555432 34679999999999988
Q ss_pred EEE
Q 007489 393 AAV 395 (601)
Q Consensus 393 as~ 395 (601)
.++
T Consensus 546 fV~ 548 (592)
T 4a9v_A 546 FVG 548 (592)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.36 E-value=86 Score=28.64 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=74.8
Q ss_pred cceeEE-EEcc--CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 325 QFAHSM-IFSY--DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 325 ~~v~~i-~~s~--d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
..|.++ .+.. +..++++++.+|.|+...+......+. .+. ..-.+. ..+.+..+........|+..+..|.+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~---~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~ 169 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGI---VAVNLR-DNDELVGAVLCSAGDDLLLVSANGQS 169 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCE---ESCBCC-TTCCEEEEEEECTTCEEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-Cce---EEEEEC-CCCEEEEEEEecCCCEEEEEECCCeE
Confidence 345544 3332 577899999999999988754332111 000 000011 23456666655666788888999999
Q ss_pred EEEEcC--CceE-------EEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 402 YIFNLE--IQRQ-------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 402 ~iwd~~--~~~~-------~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
..+... .-.. ...+.-..+..|.++...+ .+..|+.++..|.++.-.+..
T Consensus 170 ~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 170 IRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGG
T ss_pred EEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHH
Confidence 888876 2111 1112212345677777666 667899999999988887754
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.91 E-value=1.9e+02 Score=31.17 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=33.8
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
.+.+++..++..++++-+.|+++|+|++.+++++.+..-
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567778888889999999999999999999998877653
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.22 E-value=1.1e+02 Score=27.70 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=71.0
Q ss_pred ceeEEEEc---cCCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 326 FAHSMIFS---YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 326 ~v~~i~~s---~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
.|.++..- .++.+++..+.+|.++...+........ .+.. .-.+... +.+..+....+...|+..+.+|.+.
T Consensus 96 ~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-~G~~---~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~i 170 (307)
T 1zi0_A 96 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AGKV---AIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVV 170 (307)
T ss_dssp CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-TCEE---SSCCCTT-CCEEEEEEECTTCEEEEEETTSEEE
T ss_pred EEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-CCeE---EEEECCC-CEEEEEEEeCCCCEEEEECCCCcEE
Confidence 45554332 3566788999999999988753322110 0000 0001113 5565655555566788888999988
Q ss_pred EEEcCCce-------EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 403 IFNLEIQR-------QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 403 iwd~~~~~-------~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.++...-. -...+....+..|.++.... ++..|++.+..|.++-.+++.
T Consensus 171 rf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 171 RFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC-SSCEEEEEETTSEEEEECGGG
T ss_pred EEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHH
Confidence 88874321 11112222345677776555 566788888899888887754
No 364
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=54.34 E-value=1.7e+02 Score=28.95 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=45.5
Q ss_pred CcEEEEECCCCceEEEEEeccCCCCCCCceEEEEEEEeeCC--eEEEEcCCCc---------------------------
Q 007489 9 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGS--------------------------- 59 (601)
Q Consensus 9 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~l~s~~~dg~--------------------------- 59 (601)
..|.+|++. |+.+.++..+.......|-..+....|.-|| .|+....+|+
T Consensus 151 ~~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 368889985 8888888754322222366677777788888 6777766665
Q ss_pred -EEEeeCCccchhhhc
Q 007489 60 -VQFWDSRHGTLLQAH 74 (601)
Q Consensus 60 -i~vwd~~~~~~~~~~ 74 (601)
|.|+|-.+|+.+.++
T Consensus 230 yL~vfdG~TG~~l~~~ 245 (591)
T 2zux_A 230 YLTVFQGSTGKELVTA 245 (591)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCCEEecc
Confidence 778888888776554
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=54.02 E-value=1.2e+02 Score=26.93 Aligned_cols=222 Identities=13% Similarity=0.021 Sum_probs=107.2
Q ss_pred EEEEEEEeeCCeEEEEcCCCcEEEeeCCccchhhhccccccceEEEEEeCCCCEEEEEeeCCeEEEEEeccCcCCCCCCC
Q 007489 39 CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL 118 (601)
Q Consensus 39 ~V~~v~~s~~g~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 118 (601)
.|..|+......++. . ||.|..|-......+..-......|..++...+-. ++. . ||.|..|-.......
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gql----- 94 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQT----- 94 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTT-----
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCC-----
Confidence 455665443333333 4 88898886543222211111233677777653322 333 4 899999976543210
Q ss_pred CCccccceeEEecCccccccceeEEEeeccccCCCCCCcccccccCCCCccccccccccccCCCCEEEEecCCCeEEEEe
Q 007489 119 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 198 (601)
Q Consensus 119 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~~~~ 198 (601)
..-..-...|..++.. .+ ..+.-. ||.|+.|-
T Consensus 95 ------------g~P~~~~~~v~~ia~G---------~~--------------------------hs~al~-~G~v~~wG 126 (282)
T 3qhy_B 95 ------------TVPAEARSGVDAIAAG---------AW--------------------------ASYALK-DGKVIAWG 126 (282)
T ss_dssp ------------CCCGGGSSSEEEEEEE---------TT--------------------------EEEEEE-TTEEEEEE
T ss_pred ------------CCCcccCCCeEEEECc---------CC--------------------------EEEEEe-CCeEEEec
Confidence 0001112356666653 11 333334 99999998
Q ss_pred ccccCCcCCCccCCCCCccceeeeeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 007489 199 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 278 (601)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (601)
.....++.... .....+..++...+..+++. ++.+..|-........ .+.. ....|
T Consensus 127 ~n~~gqlg~~~-------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg---------~p~~-------~~~~v 182 (282)
T 3qhy_B 127 DDSDGQTTVPA-------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT---------VPAE-------AQSGV 182 (282)
T ss_dssp CCTTSTTSCCG-------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS---------CCGG-------GGSSE
T ss_pred CCCCCcCCCCc-------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC---------Ccee-------cCCCe
Confidence 76644332111 11123445555555555555 6776666544322110 0000 02345
Q ss_pred EEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCC
Q 007489 279 ICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 355 (601)
Q Consensus 279 ~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~ 355 (601)
..++...+. .++. .++.++.|-... .++.- +. ......|..|+-..+. .++. . ||.|+.|=...
T Consensus 183 ~~i~~G~~h-s~al-~~G~v~~wG~n~--~gqlg--~p----~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 183 DDVAGGIFH-SLAL-KDGKVIAWGDNR--YKQTT--VP----TEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EEEEECSSE-EEEE-ETTEEEEEECCT--TSTTC--CC----GGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTC
T ss_pred EEEEecCCE-EEEE-ECCeEEEEECCC--CCCCC--CC----cccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCC
Confidence 555554433 3334 677777776553 12110 00 0112356667654433 3333 3 99999996543
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.18 E-value=1.2e+02 Score=31.10 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=29.8
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
.|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3444444 477999999999999999999998877765
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.49 E-value=62 Score=35.88 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=32.5
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
..+.+++..++..+|++-+.|++++||++.++++..+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345667777888999999999999999999998876643
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=48.76 E-value=1.5e+02 Score=26.71 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=69.7
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-----
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ----- 409 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~----- 409 (601)
+..+|+..+..|.++...+......+ -.+ ...-.+. ..+.+..+....+...|+..+.+|.+..+..+.-
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r-~~G---~~~i~L~-~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR 187 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVK-SRG---VIVIKLN-DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR 187 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC-----C---EECBCCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccC-CCc---EEEEecC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCC
Confidence 46678889999999998874332111 000 0000111 2455666666555678888999999999987531
Q ss_pred --eEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 410 --RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 410 --~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
+-...+....+..|.++.... ++..|++.+..|......++.-
T Consensus 188 ~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 188 GTQGVCGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TBCCEECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGS
T ss_pred CCCCeEeEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHh
Confidence 112222222345677776655 5667889999999999988653
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.45 E-value=44 Score=34.31 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=29.8
Q ss_pred CCeeEEEEccCCCEEEEEecCCeEEEEEcCCceEEEEee
Q 007489 378 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 416 (601)
Q Consensus 378 ~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~ 416 (601)
..|.++.+ +..+|++-+.|.++|+|++.++++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 34665555 67899999999999999999999776544
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=43.74 E-value=2.9e+02 Score=28.51 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=57.7
Q ss_pred cCCcEEEEEcCCCc-------eeee-eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCe--EEEEEcCCceE-E
Q 007489 344 HDRRIYVVDVSSSE-------LLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD--VYIFNLEIQRQ-H 412 (601)
Q Consensus 344 ~dg~i~vwd~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~--i~iwd~~~~~~-~ 412 (601)
..+.|.+.++.++. .... +.+. ....+..+.+..+ .++++...++. |.++++.+++. .
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~ 386 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPT----------ANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTK 386 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCC----------TTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECC
T ss_pred CCCeEEEEECCcccccccccccceEEECCC----------CCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEE
Confidence 35678888886542 1222 3221 3456788888876 56677777764 67777766641 1
Q ss_pred EE-eeccCCCceeEEEecCCCCC-EEEEEeC---CCeEEEEEcCCCCcc
Q 007489 413 WF-ISRLEGASVTAAGFPPQNNN-VLIITTS---SNQVYVFDVEAKQLG 456 (601)
Q Consensus 413 ~~-~~~~~~~~v~~l~~~p~~~~-~l~~~~~---dg~v~vwd~~~~~~~ 456 (601)
.. +.......+....+++ ++. ++++.+. -+.++.+|+. ++..
T Consensus 387 ~~~i~lp~~~~~~~~~~~~-~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 387 PVVLKLPYQNAIFGMSSYE-EEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp CEEECCCSTTCEEEEECCT-TCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EeccCCCCCeEEEEEeecC-cCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 12 2221123566667777 554 4444433 3678888887 5443
No 371
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=41.19 E-value=2.3e+02 Score=26.51 Aligned_cols=77 Identities=6% Similarity=0.056 Sum_probs=47.5
Q ss_pred CCeEEEEEcCC----CCEEEEEcCCccEEEEeecC---CC--CcceEEEeeecCCcCccceeEEEEc-cCCCeEEEEecC
Q 007489 276 RKIICSTISNS----GMLFAYSDHVKPSLFELKKG---KV--GQGEWIINKRQLPRKLQFAHSMIFS-YDSSQLIIAGHD 345 (601)
Q Consensus 276 ~~i~~~~~s~~----g~~l~~~~~~~v~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~v~~i~~s-~d~~~l~~~~~d 345 (601)
..+..+++||+ ++.|..+.-..-++|.+.+. +. ...+ +.. .. .+.......+++. .+|.++++--..
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v-~~~-G~-kg~~s~~~~~~~D~~~G~ly~~~~~~ 296 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP-ELL-GN-RGKYNDAIALAYDPKTKVIFFAEANT 296 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC-EEE-EE-CCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce-EEe-ee-cCCCCCcceEEEeCCCCeEEEEeccC
Confidence 56999999998 78888876667788887641 11 1111 000 00 1111223455675 577667777777
Q ss_pred CcEEEEEcCC
Q 007489 346 RRIYVVDVSS 355 (601)
Q Consensus 346 g~i~vwd~~~ 355 (601)
..|..|+...
T Consensus 297 ~aI~~w~~~~ 306 (381)
T 3q6k_A 297 KQVSCWNTQK 306 (381)
T ss_dssp SEEEEEETTS
T ss_pred CeEEEEeCCC
Confidence 8899999764
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=40.60 E-value=1.9e+02 Score=25.49 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=75.9
Q ss_pred ccceeEEEEcc-CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEE
Q 007489 324 LQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 402 (601)
Q Consensus 324 ~~~v~~i~~s~-d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~ 402 (601)
...|..+.... +..+++..+.+|.++...+.... .+. .+. ..-.+. ..+.+..+........|+..+..|.+.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-~G~---~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~ 140 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA-QGM---PIIKLT-EGDEVVSIASSVDETHILLFTKKGRVA 140 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCS-TTE---ECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-CCe---EEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEE
Confidence 34555554322 56789999999999999875432 110 000 000000 245666666666677899999999998
Q ss_pred EEEcCCce-------EEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCCC
Q 007489 403 IFNLEIQR-------QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 403 iwd~~~~~-------~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
.++...-. -...+.-..+..|.++...+ ++..|+.++..|.++...++.-
T Consensus 141 r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 141 RFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGS
T ss_pred EEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHc
Confidence 88864211 11112212235677766666 6678999999999988887653
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.70 E-value=23 Score=39.23 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=32.8
Q ss_pred ceeEEEEccCCCeEEEEecCCcEEEEEcCCCceeeeecc
Q 007489 326 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP 364 (601)
Q Consensus 326 ~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 364 (601)
.+.+++..++..++++-+.|+++++|++.+++++.+..-
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445566778889999999999999999999998887654
No 374
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=35.44 E-value=3.3e+02 Score=28.28 Aligned_cols=113 Identities=10% Similarity=0.078 Sum_probs=57.2
Q ss_pred CeeEEEEccCC-CEEEEEecCCeEEEEEcCCceEEEEeeccC------CCceeEEEecCCCCCEEEEEeCC-------Ce
Q 007489 379 PITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRLE------GASVTAAGFPPQNNNVLIITTSS-------NQ 444 (601)
Q Consensus 379 ~i~~l~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~l~~~p~~~~~l~~~~~d-------g~ 444 (601)
.|..|+++|.. ..|.++...+.|+..+=. ++.-..+.... ...|.+|+++|.+.+.|+++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999964 455556656666555433 33222222111 23589999998444555555422 12
Q ss_pred EEEEEcCCCCcccchhcccC-CcCcccccCCCcEEEEEeCCCCCCCEEEEEc
Q 007489 445 VYVFDVEAKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 495 (601)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~ 495 (601)
..||.-..+- ..|...... .......+ ...+..|+++|. ..+.+++..
T Consensus 103 ~~l~~S~DgG-~TW~~~~~~~~~~~~~~g-~~~~~~l~~~p~-~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRG-ETWEKTILPFKMGGNMPG-RSMGERLAIDPN-DNRILYLGT 151 (737)
T ss_dssp CEEEEESSSS-SSCEEEECSSCCCTTSTT-TTSCCCEEECSS-CTTCEEEEC
T ss_pred ccEEEeCCCC-CCcccCCCCcccCCCcCc-ccccceEEECCC-CCCEEEEee
Confidence 4555544332 235433210 00000000 112457889887 556666654
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=34.40 E-value=4.1e+02 Score=27.44 Aligned_cols=73 Identities=7% Similarity=0.048 Sum_probs=43.6
Q ss_pred ccceeEEEEccCCCeEEEEecCCc--EEEEEcCCCc-eeee-eccCcccccccCCCCCCCeeEEEEccCCCE-EEEEe--
Q 007489 324 LQFAHSMIFSYDSSQLIIAGHDRR--IYVVDVSSSE-LLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQW-LAAVN-- 396 (601)
Q Consensus 324 ~~~v~~i~~s~d~~~l~~~~~dg~--i~vwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd~~~-las~~-- 396 (601)
...+..+.+..+ .++++...++. +.++++.+++ .... +... ....+.....++++.. +++.+
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp----------~~~~~~~~~~~~~~~~~~~~~ss~ 417 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP----------YQNAIFGMSSYEEEEEALITIENS 417 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCC----------STTCEEEEECCTTCSCEEEEEECS
T ss_pred CCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCC----------CCeEEEEEeecCcCCEEEEEEecC
Confidence 446778888866 46677777764 6677766564 2233 2211 1245666677777654 44433
Q ss_pred -cCCeEEEEEcC
Q 007489 397 -CFGDVYIFNLE 407 (601)
Q Consensus 397 -~dg~i~iwd~~ 407 (601)
.-+.+..+|+.
T Consensus 418 ~~P~~~~~~d~~ 429 (711)
T 4hvt_A 418 IVPPTIYLWVKT 429 (711)
T ss_dssp SSCCEEEEECTT
T ss_pred CCCCEEEEEeCC
Confidence 23678888877
No 376
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=31.52 E-value=4e+02 Score=26.50 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEec--------
Q 007489 273 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-------- 344 (601)
Q Consensus 273 ~~~~~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~-------- 344 (601)
.....+....-.++|.++.... ..+..+|.. ++.+|+.....-..... ..+...|+|+.|+.+..
T Consensus 204 ~~~g~l~~~~g~~nG~l~~g~G-~~i~elD~~----Gkvv~~~~lp~g~~~~H--HD~~~l~nGn~Lv~v~~~d~~~~dG 276 (571)
T 3elq_A 204 NKRGYLMGIRETPRGTFTAVQG-QHWYEFDMM----GQVLEDHKLPRGFADAT--HESIETPNGTVLLRVGKSNYRRDDG 276 (571)
T ss_dssp GGCSCCEEEEECTTSCEEEEEB-TEEEEECTT----CCEEEEEECCTTEECBC--SCEEECTTSCEEEEEEETTEECTTS
T ss_pred cCCCeEEEEEecCCCCEEEecC-cEEEEECCC----CcEEEEEECCCCccccc--cceEEcCCCcEEEEEecccccCCCC
Q ss_pred ------CCcEEEEEcCCCceeeeeccCcccccccCCC----------------------------------------CCC
Q 007489 345 ------DRRIYVVDVSSSELLHTFTPCREEHDREIQP----------------------------------------SEP 378 (601)
Q Consensus 345 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~ 378 (601)
+..|...| .+|+.+..+............. .=-
T Consensus 277 ~~~~~vdD~I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~ 355 (571)
T 3elq_A 277 VHVTTIRDHILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWA 355 (571)
T ss_dssp CEECCCSCEEEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSC
T ss_pred cccceeccEEEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCc
Q ss_pred CeeEEEEcc-CCCEEEEEecCCeEEEEEcCCceEEEEeeccCC----------Cce-----------------eEEEecC
Q 007489 379 PITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG----------ASV-----------------TAAGFPP 430 (601)
Q Consensus 379 ~i~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~v-----------------~~l~~~p 430 (601)
.|+++.+.+ ++.+|+++..- .|...|. +++..+.+....+ .++ ....|+-
T Consensus 356 HiNsv~~d~~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~~w~~d~~~~~l~Pvd~~G~~~~~~~~~~~~~~~F~~~~ 433 (571)
T 3elq_A 356 HVNSIAYDAKDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSKGWEKPLASKLLKPVDANGKPITCNENGLCENSDFDFTY 433 (571)
T ss_dssp CEEEEEEETTTTEEEEEETTT-EEEEEET-TSCEEEEESCSTTCCTTGGGGBCEEBCTTSCBCCBCTTSCBSSSSCCCCS
T ss_pred EecceeEcCCCCEEEEECCcc-EEEEEcC-CCcEEEEECCCCCCchhhhhhccccccccCcccccccccccccCCCcccc
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 007489 431 QNNNVLIITTSSNQVYVFD 449 (601)
Q Consensus 431 ~~~~~l~~~~~dg~v~vwd 449 (601)
+++=+.--.++.|.+||
T Consensus 434 --gQH~a~~~~~g~i~vFD 450 (571)
T 3elq_A 434 --TQHTAWISSKGTLTIFD 450 (571)
T ss_dssp --SCEEEEECTTSCEEEEE
T ss_pred --CCcCeEEcCCCeEEEEe
No 377
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=30.26 E-value=3.5e+02 Score=25.39 Aligned_cols=161 Identities=9% Similarity=0.052 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCEEEEEcCCccEEEEeecCCC-----CcceEEEeeecCCc-CccceeEEEEccCCCeEEEEecCCcEEE
Q 007489 277 KIICSTISNSGMLFAYSDHVKPSLFELKKGKV-----GQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYV 350 (601)
Q Consensus 277 ~i~~~~~s~~g~~l~~~~~~~v~l~~~~~~~~-----~~~~~~~~~~~~~~-~~~~v~~i~~s~d~~~l~~~~~dg~i~v 350 (601)
.|..++... ...++...++.|+.|-...... ........ .+.. ....|..++. .....++-..+|.|+.
T Consensus 122 ~i~~ia~G~-~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~--~v~~~~~~~i~~va~--G~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIACGD-SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQ--KIQAFEGIRIKMVAA--GAEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEECS-SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEE--ECGGGTTCCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CEEEEEECh-hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccce--EecccCCCcEEEEec--CCCeEEEEeCCCCEEE
Confidence 566665432 3345557888888887553110 00111111 1111 1124555544 3345556678999999
Q ss_pred EEcCC-Cce-----eeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-----------eEEE
Q 007489 351 VDVSS-SEL-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-----------RQHW 413 (601)
Q Consensus 351 wd~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-----------~~~~ 413 (601)
|-... +++ ...+.+.. ........|..++. ...+.++-..+|.|+.|-.... ....
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~-----v~~~~~~~i~~va~--G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~ 269 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPER-----VTSTGGEKMSMVAC--GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH 269 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEE-----CCCSTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEE
T ss_pred eeCCCCCCCCCCCCCCcCccEE-----ecccCCceEEEEEE--CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccE
Confidence 97532 111 00000000 00002245666665 4446666678899999964321 1111
Q ss_pred EeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 414 FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 414 ~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
.+.......|..++-. ..+.++-..||.|+.|-...
T Consensus 270 ~v~~~~~~~v~~i~~G---~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 270 KLEALSNSFISQISGG---WRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp ECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCT
T ss_pred EecccCCCCEEEEEec---CCEEEEEcCCCeEEEeeCCC
Confidence 2222333456666553 45666677899999998653
No 378
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=28.39 E-value=1.7e+02 Score=28.98 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=44.5
Q ss_pred CeeEEEEccCCC--EEEEEecCCeEEEEEcCCc----eEEEEeeccC-CCcee-EEEecCCCCCEEEEEeCCCeEEE
Q 007489 379 PITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQ----RQHWFISRLE-GASVT-AAGFPPQNNNVLIITTSSNQVYV 447 (601)
Q Consensus 379 ~i~~l~~spd~~--~las~~~dg~i~iwd~~~~----~~~~~~~~~~-~~~v~-~l~~~p~~~~~l~~~~~dg~v~v 447 (601)
..++|+....+. .+..|+.+|.|+=..+... .....+.... +.+|. .|.+++ +..+|++++.++-++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~-~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI-NQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT-TSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc-CCCeEEEEecccccee
Confidence 467777765444 4668899998765555432 1223333333 56785 899999 8899999887764444
No 379
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=27.13 E-value=1.3e+02 Score=29.71 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=41.1
Q ss_pred eeEEEEccCC--CeEEEEecCCcEEEEEcCCC----ceeeeeccCcccccccCCCCCCCee-EEEEccCCCEEEEEecCC
Q 007489 327 AHSMIFSYDS--SQLIIAGHDRRIYVVDVSSS----ELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNCFG 399 (601)
Q Consensus 327 v~~i~~s~d~--~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spd~~~las~~~dg 399 (601)
.++|+....+ ..++.|+.+|.|.-..+... ....++... ....+|. .|.+++++.+|++++.++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~---------~~~~pv~~~l~~~~~~~~Lyv~s~~~ 472 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVF---------KDGSPILRDMAFSINQLYLYVMSERQ 472 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECC---------TTCCCCCSCCEECTTSSEEEEECSSE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEee---------cCCCccccceEEccCCCeEEEEeccc
Confidence 4555554433 34778888998766555322 122222221 1345675 899999999999998776
Q ss_pred eEEE
Q 007489 400 DVYI 403 (601)
Q Consensus 400 ~i~i 403 (601)
.++|
T Consensus 473 V~kv 476 (539)
T 3al9_A 473 VTRV 476 (539)
T ss_dssp EEEE
T ss_pred ccee
Confidence 4443
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.36 E-value=3.9e+02 Score=24.76 Aligned_cols=114 Identities=9% Similarity=0.020 Sum_probs=65.4
Q ss_pred CCCeEEEEecCCcEEEEEcCCCceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCceE---
Q 007489 335 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ--- 411 (601)
Q Consensus 335 d~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~~~--- 411 (601)
++.+|+.++..|.++...+........ .+. ..-.+. ..+.+..+....+...|+..+.+|.+..++...-..
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~-~G~---~ai~L~-~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLA-RGK---IAINLD-EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCT-TCE---ESSCCC-TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccC-Cce---EEEEeC-CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 456899999999999988754322110 000 000011 234555555555666788888999988888643211
Q ss_pred ----EEEeeccCCCceeEEEecCC----------------------------------CCCEEEEEeCCCeEEEEEcCCC
Q 007489 412 ----HWFISRLEGASVTAAGFPPQ----------------------------------NNNVLIITTSSNQVYVFDVEAK 453 (601)
Q Consensus 412 ----~~~~~~~~~~~v~~l~~~p~----------------------------------~~~~l~~~~~dg~v~vwd~~~~ 453 (601)
...+....+..|.++...+. ++..|++.+..|..+...+..-
T Consensus 187 ~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 187 TATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp TCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGS
T ss_pred CCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence 11222122345555554430 2357888888898888887643
No 381
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=25.48 E-value=3.5e+02 Score=23.80 Aligned_cols=168 Identities=11% Similarity=0.051 Sum_probs=91.8
Q ss_pred CCCeEEEEEcC-CCCEEEE-EcCCccEEEEeecCCCCcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEE
Q 007489 275 SRKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 352 (601)
Q Consensus 275 ~~~i~~~~~s~-~g~~l~~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd 352 (601)
...|..+.... +..+++. +..|.++-..+..-.....- .....+.. ...+..+........++..+..|.+..++
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G--~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQG--MPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTT--EECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC--eEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 34555554321 3445544 88898888887642100000 11122322 23445555555566788889999988888
Q ss_pred cCCCceeee-eccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc-------eEEEEeeccCCCcee
Q 007489 353 VSSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ-------RQHWFISRLEGASVT 424 (601)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~ 424 (601)
...-..... -.+. ..-.+. ....|..+...+++.+|+..+..|.++...+... +-...+ ..+..+.
T Consensus 144 ~~eip~~gR~a~Gv---~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv 217 (276)
T 3no0_A 144 VREVPPSTPGARGV---QGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLV 217 (276)
T ss_dssp GGGSCBCCTTCCCE---ECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEE
T ss_pred hhhCCCcCCCCCCE---EEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEE
Confidence 643211100 0000 000011 2356777666666778999999999999887532 222222 1234455
Q ss_pred EEEecCCCCCEEEEEeCCCeEEE--EEcCC
Q 007489 425 AAGFPPQNNNVLIITTSSNQVYV--FDVEA 452 (601)
Q Consensus 425 ~l~~~p~~~~~l~~~~~dg~v~v--wd~~~ 452 (601)
.+.... +...++..+.+|.+.. ++++.
T Consensus 218 ~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 218 DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 544444 4556777888888888 88754
No 382
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.38 E-value=2.4e+02 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=23.4
Q ss_pred CCCCeeEEEEccCCCEEEEEecCCeEEE
Q 007489 376 SEPPITKMFTSSDGQWLAAVNCFGDVYI 403 (601)
Q Consensus 376 ~~~~i~~l~~spd~~~las~~~dg~i~i 403 (601)
...+|..|.++++.++|.+++.++.++|
T Consensus 460 ~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 460 EPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp SCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 3568899999999999999998876554
No 383
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.37 E-value=2e+02 Score=21.03 Aligned_cols=61 Identities=7% Similarity=-0.024 Sum_probs=30.9
Q ss_pred CCEEEEEecCCeEEEEEcCCceEEEEeeccCCCceeEEEecCCCCCEEEEEeCCCeEEEEEcCC
Q 007489 389 GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 389 ~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
+.+.+.-..||.+.+|+...+...+.-..........+.+.. +|++++. ..++.+ +|.-.+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~-dGNLVl~-d~~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGH-SGELDIT-DDRLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECT-TSCEEEE-CTTSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeC-CCcEEEE-CCCCCE-EEECCC
Confidence 555555566666666665334444443322111224566666 7765554 334443 676544
No 384
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=24.46 E-value=4.4e+02 Score=24.66 Aligned_cols=211 Identities=10% Similarity=0.045 Sum_probs=97.4
Q ss_pred eeccccCCCeEEEEEeCCeeEEeeccccCCcccCCCCCCCCCcce-EEEEEecCCCCeEEEEEcCCCCEEEEEcCCccEE
Q 007489 222 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL-LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSL 300 (601)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~v~l 300 (601)
+..++......++++.++.+..|-.+...... .+...... ...+.......|..++... ...++...++.++.
T Consensus 123 i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG-----~g~~~~~~~p~~v~~~~~~~i~~va~G~-~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 123 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-----LGDTEDSLVPQKIQAFEGIRIKMVAAGA-EHTAAVTEDGDLYG 196 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTC-----SSSCCCEEEEEECGGGTTCCEEEEEECS-SEEEEEETTSCEEE
T ss_pred EEEEEEChhheEEEcCCCcEEEeCCCCCccCC-----CCCCCCcccceEecccCCCcEEEEecCC-CeEEEEeCCCCEEE
Confidence 44455555556666677877777544321110 00000001 1111111123455555433 23344477888888
Q ss_pred EEeecCCC-----CcceEEEeeecCCcCccceeEEEEccCCCeEEEEecCCcEEEEEcCCC-ce-----eeeeccCcccc
Q 007489 301 FELKKGKV-----GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-EL-----LHTFTPCREEH 369 (601)
Q Consensus 301 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~i~~s~d~~~l~~~~~dg~i~vwd~~~~-~~-----~~~~~~~~~~~ 369 (601)
|-...... ........... ......|..++.. ....++-..+|.|+.|-.... ++ .....+..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~-~~~~~~i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~--- 270 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVT-STGGEKMSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK--- 270 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECC-CSTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE---
T ss_pred eeCCCCCCCCCCCCCCcCccEEec-ccCCceEEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE---
Confidence 86543110 01111111111 1112345555443 334555577899999875322 11 00000000
Q ss_pred cccCCCCCCCeeEEEEccCCCEEEEEecCCeEEEEEcCCc----------e-EEEEeeccCCCceeEEEecCCCCCEEEE
Q 007489 370 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ----------R-QHWFISRLEGASVTAAGFPPQNNNVLII 438 (601)
Q Consensus 370 ~~~~~~~~~~i~~l~~spd~~~las~~~dg~i~iwd~~~~----------~-~~~~~~~~~~~~v~~l~~~p~~~~~l~~ 438 (601)
... .....|..++. ...+.++-..||.|+.|=.... . ....+.......|..++.- ..+.++
T Consensus 271 v~~--~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G---~~hs~a 343 (406)
T 4d9s_A 271 LEA--LSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG---WRHTLA 343 (406)
T ss_dssp CGG--GTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC---SSEEEE
T ss_pred ecc--cCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC---CCeEEE
Confidence 000 02234666655 4445666678899999964321 0 1111221222456666653 456666
Q ss_pred EeCCCeEEEEEcC
Q 007489 439 TTSSNQVYVFDVE 451 (601)
Q Consensus 439 ~~~dg~v~vwd~~ 451 (601)
...||.|+.|--.
T Consensus 344 lt~~G~v~~wG~n 356 (406)
T 4d9s_A 344 VTERNNVFAWGRG 356 (406)
T ss_dssp EETTSCEEEEECC
T ss_pred EeCCCCEEEecCC
Confidence 6789999999864
No 385
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=24.08 E-value=1.6e+02 Score=23.95 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCceEEEEEEEeeCC--eEEEEcCCCcEEEeeCCccc
Q 007489 35 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT 69 (601)
Q Consensus 35 ~h~~~V~~v~~s~~g--~l~s~~~dg~i~vwd~~~~~ 69 (601)
.+...+.++.|...+ .|++.+++|++.++|.+-|+
T Consensus 116 ~g~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GE 152 (188)
T 1ukf_A 116 SGRKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGE 152 (188)
T ss_dssp TTCEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEE
T ss_pred CCCceEEEEEecCCCceeEEeccCCCeEEEeCCCCce
Confidence 346677788887655 68888889999999998876
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.09 E-value=3.7e+02 Score=23.29 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=65.2
Q ss_pred EEEEccCCCeEEEEecCCcEEEEEcCCC-------ceeeeeccCcccccccCCCCCCCeeEEEEccCCCEEEEEecCCeE
Q 007489 329 SMIFSYDSSQLIIAGHDRRIYVVDVSSS-------ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 401 (601)
Q Consensus 329 ~i~~s~d~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd~~~las~~~dg~i 401 (601)
.+........|+..+..|.++-+....- ..+..+- .+. ....|.++....++.+|+.++..|.+
T Consensus 37 ~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i--------~L~-~~e~Iv~~~~~~~~~~lll~T~~G~~ 107 (256)
T 1zvt_A 37 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL--------TLP-PGATVDHMLMESDDQKLLMASDAGYG 107 (256)
T ss_dssp EEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTC--------CCC-TTCCEEEEECCCTTCEEEEEBTTSEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeee--------cCC-CCCEEEEEEEeCCCCEEEEEeCCCeE
Confidence 3333334446667788888766654321 1110000 011 24567776544567788899999999
Q ss_pred EEEEcCCceE-----EEEeeccCCCceeEEEec-CCCCCEEEEEeCCCeEEEEEcCC
Q 007489 402 YIFNLEIQRQ-----HWFISRLEGASVTAAGFP-PQNNNVLIITTSSNQVYVFDVEA 452 (601)
Q Consensus 402 ~iwd~~~~~~-----~~~~~~~~~~~v~~l~~~-p~~~~~l~~~~~dg~v~vwd~~~ 452 (601)
+...+..... ...+.--.+..+..+... . +...|+..+.+|.+..|.++.
T Consensus 108 Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~-~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 108 FVCTFNDLVARNRAGKALITLPENAHVMPPVVIED-ASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp EEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCC-TTCEEEEEETTSEEEEEEGGG
T ss_pred EEeEHHHhcccCcCceEEEEECCCCEEEEEEEecC-CCCEEEEEcCCCeEEEEEHHH
Confidence 9998753211 111111123445554444 3 456788999999999998865
Done!