Your job contains 1 sequence.
>007492
MLLQLPRLTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYRWEEAST
EVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQ
TLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFGSDLVFQAPAR
FLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSAADGRNFNLSWLRDACDRIVRQ
SISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIRHG
MLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAENDVSST
SFSSLIEASERKNPLDGLIGSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGE
KLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILH
EIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNEL
EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVY
N
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007492
(601 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 697 1.0e-78 2
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 698 1.5e-78 3
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 698 3.1e-78 3
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 701 5.0e-78 3
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 695 5.5e-78 2
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 693 4.6e-77 3
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 696 1.5e-75 2
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 702 3.0e-73 2
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 622 7.2e-65 2
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 618 4.0e-64 2
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 563 2.4e-63 2
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 635 1.4e-60 1
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 581 2.9e-60 2
UNIPROTKB|H9L1I7 - symbol:SNRNP200 "Uncharacterized prote... 611 1.3e-59 1
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 618 1.4e-59 1
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 565 2.7e-59 2
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 617 1.2e-58 1
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 617 1.2e-58 1
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 616 1.5e-58 1
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 615 1.9e-58 1
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 614 2.5e-58 1
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 605 2.3e-57 1
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 594 3.7e-57 2
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 599 9.9e-57 1
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 599 1.1e-56 1
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 598 1.1e-56 1
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 557 3.3e-56 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 588 1.5e-55 1
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 564 1.7e-54 2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 530 5.8e-52 2
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 491 3.9e-50 2
UNIPROTKB|I3L8F4 - symbol:I3L8F4 "Uncharacterized protein... 392 3.8e-36 1
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 414 1.4e-34 2
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 414 1.4e-34 2
UNIPROTKB|H9L1I6 - symbol:SNRNP200 "Uncharacterized prote... 369 1.1e-31 1
UNIPROTKB|C9JAQ9 - symbol:SNRNP200 "U5 small nuclear ribo... 368 2.6e-31 1
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 273 5.0e-29 3
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 273 5.0e-29 3
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 313 2.7e-24 1
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 310 5.4e-24 1
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 305 1.9e-23 1
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 305 2.0e-23 1
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 303 3.2e-23 1
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 299 4.6e-23 1
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 301 5.2e-23 1
UNIPROTKB|H9KZ72 - symbol:SNRNP200 "Uncharacterized prote... 292 1.1e-22 1
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 304 3.0e-22 2
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 274 3.6e-20 1
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 255 4.1e-20 1
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 269 1.2e-19 1
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 266 2.3e-19 1
UNIPROTKB|D4A4G4 - symbol:Hfm1 "Protein Hfm1" species:101... 246 7.4e-18 2
UNIPROTKB|F1RYR3 - symbol:LOC100517018 "Uncharacterized p... 241 1.1e-17 1
UNIPROTKB|I3LVA7 - symbol:I3LVA7 "Uncharacterized protein... 221 2.5e-17 1
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 224 9.4e-15 1
UNIPROTKB|I3LAA7 - symbol:I3LAA7 "Uncharacterized protein... 174 9.2e-11 1
UNIPROTKB|H9L353 - symbol:H9L353 "Uncharacterized protein... 153 5.2e-10 1
TIGR_CMR|SPO_3098 - symbol:SPO_3098 "ATP-dependent helica... 154 2.4e-07 1
ASPGD|ASPL0000001605 - symbol:AN10757 species:162425 "Eme... 148 5.3e-06 2
UNIPROTKB|Q4K580 - symbol:lhr "Putative ATP-dependent hel... 147 6.4e-05 2
UNIPROTKB|E1C287 - symbol:E1C287 "Uncharacterized protein... 116 9.3e-05 1
DICTYBASE|DDB_G0274325 - symbol:ddx52 "DEAD/DEAH box heli... 124 0.00017 2
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 127 0.00035 1
UNIPROTKB|Q87XN5 - symbol:PSPTO_4141 "Helicase domain pro... 122 0.00074 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 119 0.00079 1
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 697 (250.4 bits), Expect = 1.0e-78, Sum P(2) = 1.0e-78
Identities = 138/210 (65%), Positives = 170/210 (80%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+G R++ K YEEV IP + EK + IK+LDE Q AF G K LNRIQS +F
Sbjct: 427 LPEGIQRENTKLYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVF 486
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
+T Y TNEN+L+CAPTGAGKTNIAM++ILHEI QHF G + K+EFKIVYVAPMKALAAE
Sbjct: 487 ETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAE 546
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL ++V+ELTGDMQLS++E+ TQM+VTTPEKWDV+TRKS D++LS +V
Sbjct: 547 MTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIV 606
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
KLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 607 KLLILDEVHLLHEDRGPVLESIVARTLRQV 636
Score = 297 (109.6 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 70/188 (37%), Positives = 106/188 (56%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P T ++P + I L A A + + N +Q++IF T+Y+T+ N+L+ APTG+
Sbjct: 1299 PHTELLDLQP----LPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVR 527
GKT A ++I ++ K VY+AP+KAL E + R+ L V
Sbjct: 1355 GKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVI 1406
Query: 528 ELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
ELTGD+ + + +IVTTPEKWD ++R + S V +LIIDE+HLL ++RGPV
Sbjct: 1407 ELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPV 1466
Query: 588 IEALVART 595
+E +V+RT
Sbjct: 1467 LEVIVSRT 1474
Score = 143 (55.4 bits), Expect = 1.0e-78, Sum P(2) = 1.0e-78
Identities = 72/348 (20%), Positives = 151/348 (43%)
Query: 3 LQLPRLTNSLREPFDIDQAYLQRKSILQ-NLQKPRNTTNSLDESETARKIV-YRWEEAST 60
+ LPRLT +LR ++ + + + L++ + LD T +KIV + E+
Sbjct: 1 MALPRLTGALRSFSNVTKQDNYNEEVADLKLKRSKLHEQVLDFGLTWKKIVKFLNEKLEK 60
Query: 61 EVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQ 120
Q + + +++ ++ + G A+ + F +SV +E K+ Q
Sbjct: 61 NKMQNINEDLKDILQAAK-QIVGTDNGREAIESGAAFLFMTFHMTDSVG--YMETKAIRQ 117
Query: 121 TLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFGSDLVFQAPAR 180
T G S ++ + + +S S+ ++T F + N +D FG +L F
Sbjct: 118 TF-GPFPSSSATSACNATNRIISHF--SQDDLTAFVQMAENPCNDRVVFGKNLAFSFDM- 173
Query: 181 FLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYN---SAADGRNFNLSWLRDACDRI 237
+ +D F++ + G+ S + + + Y + N +L W ++
Sbjct: 174 YDLD-HFDELPINGESQKTISLDYKKFLNEQFQEPYTPELKPVEKTNGSLLWCE--VEKY 230
Query: 238 VRQSISQLSR----DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQL 293
+ ++ +++ +DL + +L S K G+E+ +L +L+G + ++ L+ +R +
Sbjct: 231 LNATLKEMTEAARVEDLCCTLYDMLASAKSGDELQDELFELLGPEGLDLIEKLLQNRITI 290
Query: 294 VDAIR-----HGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
VD H +L+ ++ P+YG QVT+Q+E E+Q+ K
Sbjct: 291 VDRFLNSSSDHKFQVLQDSCKKILGENSKPNYGCQVTIQSEQEKQLMK 338
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 698 (250.8 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 136/210 (64%), Positives = 172/210 (81%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+G R++ K YEEV IP + + EK + I++LDE Q AF G + LNRIQS +F
Sbjct: 426 LPEGIQRENNKMYEEVKIPYSEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVF 485
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIVYVAPMKALAAE
Sbjct: 486 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAE 545
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL ++V+ELTGDMQLS+NE+ TQM+VTTPEKWDV+TRKS D++LS +V
Sbjct: 546 MTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIV 605
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
KLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 606 KLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 292 (107.8 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
Identities = 69/188 (36%), Positives = 106/188 (56%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P T ++P + I L A A + + N +Q++IF T+Y+T+ N+L+ APTG+
Sbjct: 1298 PHTELLDLQP----LPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVR 527
GKT A ++I ++ K VY+AP+KAL E + R+ L V
Sbjct: 1354 GKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVI 1405
Query: 528 ELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
ELTGD+ + + +IVTTPEKWD ++R + + V +LIIDE+HLL ++RGPV
Sbjct: 1406 ELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPV 1465
Query: 588 IEALVART 595
+E +V+RT
Sbjct: 1466 LEVIVSRT 1473
Score = 122 (48.0 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G E ++ L+ +R +VD H +
Sbjct: 245 EDLCCTLYDMLASVKSGDELQNELFELLGPDGLELIEKLLQNRITIVDRFLNSSNDHKLQ 304
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
L+ ++ P+YG QVT+Q+E E+Q+ K
Sbjct: 305 ALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMK 338
Score = 43 (20.2 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 32/167 (19%), Positives = 65/167 (38%)
Query: 3 LQLPRLTNSLREPFDIDQAYLQRKSILQ-NLQKPRNTTNSLDESETARKIVYRWEEA--S 59
+ LPRLT +LR ++ + + + +++ + LD T +KIV E
Sbjct: 1 MALPRLTGALRSFSNVTKQDNYNEEVADLKVKRSKLHEQILDLDVTWKKIVTFLNEKLEK 60
Query: 60 TEVRQVYK------QFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIV 113
+E++ V + Q +V +G+ E +HL +E ++ +
Sbjct: 61 SEIQSVNEDLNDILQAAKQIVGIDNGKEAIESAAAFLFKTFHLKDCVGHKETKAIKQMFG 120
Query: 114 EKKSKMQTLIGHAVSD-ASVYKVASLAQRLSKLQPSEHNVTLFSESL 159
S T +A + S + +L + K + + LF ++L
Sbjct: 121 PFPSSSATAACNATNRITSRFHQDNLTALILKTEEEYGDRVLFGKNL 167
Score = 40 (19.1 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 297 IRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
+R M L++ K + +PS G++ +E+Q+ K
Sbjct: 729 VRTAMSLIERAKNSGQISCFLPSQGSEYG---HAEKQVQK 765
Score = 37 (18.1 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 268 AGDLLDLVGDSAFETVQDLISHRKQLV 294
A L+ + A++ L HR+QLV
Sbjct: 928 ANPLVYGISHKAYQVDPTLAKHREQLV 954
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 698 (250.8 bits), Expect = 3.1e-78, Sum P(3) = 3.1e-78
Identities = 136/210 (64%), Positives = 172/210 (81%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+G R++ K YEEV IP + + EK + I++LDE Q AF G + LNRIQS +F
Sbjct: 426 LPEGIQRENNKMYEEVKIPYSEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVF 485
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIVYVAPMKALAAE
Sbjct: 486 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAE 545
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL ++V+ELTGDMQLS+NE+ TQM+VTTPEKWDV+TRKS D++LS +V
Sbjct: 546 MTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIV 605
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
KLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 606 KLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 292 (107.8 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 69/188 (36%), Positives = 106/188 (56%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P T ++P + I L A A + + N +Q++IF T+Y+T+ N+L+ APTG+
Sbjct: 1298 PHTELLDLQP----LPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVR 527
GKT A ++I ++ K VY+AP+KAL E + R+ L V
Sbjct: 1354 GKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVI 1405
Query: 528 ELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
ELTGD+ + + +IVTTPEKWD ++R + + V +LIIDE+HLL ++RGPV
Sbjct: 1406 ELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPV 1465
Query: 588 IEALVART 595
+E +V+RT
Sbjct: 1466 LEVIVSRT 1473
Score = 122 (48.0 bits), Expect = 3.1e-78, Sum P(3) = 3.1e-78
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G E ++ L+ +R +VD H +
Sbjct: 245 EDLCCTLYDMLASVKSGDELQNELFELLGPDGLELIEKLLQNRITIVDRFLNSSNDHKLQ 304
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
L+ ++ P+YG QVT+Q+E E+Q+ K
Sbjct: 305 ALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMK 338
Score = 43 (20.2 bits), Expect = 3.1e-78, Sum P(3) = 3.1e-78
Identities = 32/167 (19%), Positives = 65/167 (38%)
Query: 3 LQLPRLTNSLREPFDIDQAYLQRKSILQ-NLQKPRNTTNSLDESETARKIVYRWEEA--S 59
+ LPRLT +LR ++ + + + +++ + LD T +KIV E
Sbjct: 1 MALPRLTGALRSFSNVTKQDNYNEEVADLKVKRSKLHEQILDLDVTWKKIVTFLNEKLEK 60
Query: 60 TEVRQVYK------QFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIV 113
+E++ V + Q +V +G+ E +HL +E ++ +
Sbjct: 61 SEIQSVNEDLNDILQAAKQIVGIDNGKEAIESAAAFLFKTFHLKDCVGHKETKAIKQMFG 120
Query: 114 EKKSKMQTLIGHAVSD-ASVYKVASLAQRLSKLQPSEHNVTLFSESL 159
S T +A + S + +L + K + + LF ++L
Sbjct: 121 PFPSSSATAACNATNRITSRFHQDNLTALILKTEEEYGDRVLFGKNL 167
Score = 40 (19.1 bits), Expect = 3.8e-20, Sum P(3) = 3.8e-20
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 297 IRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
+R M L++ K + +PS G++ +E+Q+ K
Sbjct: 729 VRTAMSLIERAKNSGQISCFLPSQGSEYG---HAEKQVQK 765
Score = 37 (18.1 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 268 AGDLLDLVGDSAFETVQDLISHRKQLV 294
A L+ + A++ L HR+QLV
Sbjct: 928 ANPLVYGISHKAYQVDPTLAKHREQLV 954
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 701 (251.8 bits), Expect = 5.0e-78, Sum P(3) = 5.0e-78
Identities = 137/210 (65%), Positives = 172/210 (81%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+G R++ K YEEV IP T + EK + I++LDE Q AF G + LNRIQS +F
Sbjct: 426 LPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVF 485
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIVYVAPMKALAAE
Sbjct: 486 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAE 545
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL ++V+ELTGDMQLS+NE+ TQM+VTTPEKWDV+TRKS D++LS +V
Sbjct: 546 MTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIV 605
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
KLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 606 KLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 291 (107.5 bits), Expect = 5.6e-28, Sum P(3) = 5.6e-28
Identities = 64/165 (38%), Positives = 98/165 (59%)
Query: 432 AQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL 491
A A + + N +Q++IF T+Y+T+ N+L+ APTG+GKT A ++I ++
Sbjct: 1317 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY------ 1370
Query: 492 HKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTP 550
K VY+AP+KAL E + R+ L V ELTGD+ + + +IVTTP
Sbjct: 1371 --PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTP 1428
Query: 551 EKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
EKWD ++R + + V +LIIDE+HLL ++RGPV+E +V+RT
Sbjct: 1429 EKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Score = 122 (48.0 bits), Expect = 5.0e-78, Sum P(3) = 5.0e-78
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G E ++ L+ +R +VD H +
Sbjct: 245 EDLCCTLYDMLASVKSGDELQDELFELLGPDGLELIEKLLQNRVTIVDRFLNSSNDHKLQ 304
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
L+ ++ P+YG QVT+Q+E E+Q+ K
Sbjct: 305 ALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMK 338
Score = 38 (18.4 bits), Expect = 5.0e-78, Sum P(3) = 5.0e-78
Identities = 10/52 (19%), Positives = 25/52 (48%)
Query: 3 LQLPRLTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYR 54
+++ + N E ++ + K+ILQ ++ T N + E+A +++
Sbjct: 48 MKIVKFLNEKLEKSEMQRVNEDLKAILQAAKQIVGTDNGKEAIESAAAFLFK 99
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 695 (249.7 bits), Expect = 5.5e-78, Sum P(2) = 5.5e-78
Identities = 137/210 (65%), Positives = 170/210 (80%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+G R++ K YEEV IP + + EK + I++LDE Q AF G K LNRIQS +F
Sbjct: 427 LPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLAFKGMKRLNRIQSIVF 486
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF G L K+EFKIVYVAPMKALAAE
Sbjct: 487 DTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAE 546
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL ++V+ELTGDMQLS++E+ TQM+VTTPEKWDV+TRKS D++LS +V
Sbjct: 547 MTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIV 606
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
KLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 607 KLLILDEVHLLHEDRGPVLESIVARTLRQV 636
Score = 296 (109.3 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 65/165 (39%), Positives = 98/165 (59%)
Query: 432 AQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL 491
A A + + N +Q++IF T+Y+T+ N+L+ APTG+GKT A ++I ++
Sbjct: 1318 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY------ 1371
Query: 492 HKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTP 550
K VY+AP+KAL E + R+ L V ELTGD+ + + +IVTTP
Sbjct: 1372 --PTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTP 1429
Query: 551 EKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
EKWD ++R + S V +LIIDE+HLL ++RGPV+E +V+RT
Sbjct: 1430 EKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Score = 138 (53.6 bits), Expect = 5.5e-78, Sum P(2) = 5.5e-78
Identities = 69/348 (19%), Positives = 150/348 (43%)
Query: 3 LQLPRLTNSLREPFDIDQAYLQRKSILQ-NLQKPRNTTNSLDESETARKIV-YRWEEAST 60
+ LPRLT +LR ++ + + + L++ + +LD + +KIV + E+
Sbjct: 1 MALPRLTGALRSFSNVTKQDNYNEEVADLKLKRSKLHEQALDFGLSWKKIVKFLNEKLEK 60
Query: 61 EVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQ 120
Q + + +++ ++ + G A+ + F +SV E K+ Q
Sbjct: 61 NKMQTINEDLKDILQAAK-QIVGTDNGNEAIESGAAFLFMTFHMTDSVG--YTETKAIRQ 117
Query: 121 TLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFGSDLVFQAPAR 180
+ G S ++ + ++ +S S+ ++T ++ N +D FG +L F
Sbjct: 118 -MFGPFPSSSATSACNATSRIISHF--SQDDLTALVQATENQCNDRVVFGRNLAFSFDMH 174
Query: 181 FLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYN---SAADGRNFNLSWLRDACDRI 237
L F++ + G+ S + + + Y + N +L W ++
Sbjct: 175 DL--DHFDELPVNGEAQKTISLDYKKFLNEQFQEPYTPELKPVEKSNGSLLWCE--VEKY 230
Query: 238 VRQSISQLSR----DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQL 293
+ ++ +++ +DL + +L S K G+E+ +L +L+G + ++ L+ +R +
Sbjct: 231 LNATLKEMTEAPRVEDLCCTLYDMLASAKSGDELQDELFELLGPGGLDLIEKLLQNRITI 290
Query: 294 VDAIR-----HGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
VD H +L+ ++ P+YG QVT+Q+E E+Q+ K
Sbjct: 291 VDRFLNSSSDHKFQVLQDNCKKILGENAKPNYGCQVTIQSEQEKQLMK 338
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 693 (249.0 bits), Expect = 4.6e-77, Sum P(3) = 4.6e-77
Identities = 136/210 (64%), Positives = 172/210 (81%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+G R++ K YEEV IP + + EK + I++LDE Q AF G K LNRIQS +F
Sbjct: 426 LPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVF 485
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIVYVAPMKALAAE
Sbjct: 486 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAE 545
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL +IV+ELTGDMQLS++E+ TQM+VTTPEKWDV+TRKS D++LS +V
Sbjct: 546 MTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIV 605
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+LLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 606 RLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 293 (108.2 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 69/188 (36%), Positives = 106/188 (56%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P T ++P + I L A A + + N +Q++IF T+Y+T+ N+L+ APTG+
Sbjct: 1298 PHTELLDLQP----LPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVR 527
GKT A ++I ++ K VY+AP+KAL E + R+ L V
Sbjct: 1354 GKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVI 1405
Query: 528 ELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
ELTGD+ + + +IVTTPEKWD ++R + + V +LIIDE+HLL ++RGPV
Sbjct: 1406 ELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPV 1465
Query: 588 IEALVART 595
+E +V+RT
Sbjct: 1466 LEVIVSRT 1473
Score = 120 (47.3 bits), Expect = 4.6e-77, Sum P(3) = 4.6e-77
Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 240 QSISQLSR-DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR 298
+ ++++ R +DL + +L S K G+E+ +L +L+G E ++ L+ +R +VD
Sbjct: 236 KEMTEVPRVEDLCCTLYDMLASIKSGDELQDELFELLGPEGLELIEKLLQNRITIVDRFL 295
Query: 299 -----HGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
H L+ ++ P+YG QVT+Q+E E+Q+ K
Sbjct: 296 NSSNDHRFQALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMK 338
Score = 39 (18.8 bits), Expect = 4.6e-77, Sum P(3) = 4.6e-77
Identities = 20/117 (17%), Positives = 48/117 (41%)
Query: 3 LQLPRLTNSLREPFDIDQAYLQRKSILQ-NLQKPRNTTNSLDESETARKIVY----RWEE 57
+ LPRLT +LR ++ + + + +++ + LD T +KI+ + E+
Sbjct: 1 MALPRLTGALRSFSNVTKQDNYNEEVADLKIKRSKLHEQVLDLGLTWKKIIKFLNEKLEK 60
Query: 58 ASTE-VRQVYKQFIGAVVEFI---DGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNR 110
+ + + + K + A + + +G E +HL +E ++ +
Sbjct: 61 SKMQSINEDLKDILHAAKQIVGTDNGREAIESGAAFLFMTFHLKDSVGHKETKAIKQ 117
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 696 (250.1 bits), Expect = 1.5e-75, Sum P(2) = 1.5e-75
Identities = 137/210 (65%), Positives = 169/210 (80%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP+ R++ K YEEV IP + + EK++ IK+LDE Q AF G K LNRIQS +F
Sbjct: 435 LPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIVF 494
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510
+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QH + G + KDEFKIVYVAPMKALAAE
Sbjct: 495 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAE 554
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLV 569
+T FS RL PL + V+ELTGDMQLS+ E+ TQM+VTTPEKWDV+TRKS D++LS LV
Sbjct: 555 MTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLV 614
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
KLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 615 KLLILDEVHLLHEDRGPVLESIVARTLRQV 644
Score = 294 (108.6 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 65/158 (41%), Positives = 95/158 (60%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+ N IQ++IF T+Y+T+ N+L+ APTG+GKT A ++I ++ K
Sbjct: 1333 FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY--------PTSKA 1384
Query: 499 VYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+AP+KAL E + R+ L V ELTGD+ + + +IVTTPEKWD ++
Sbjct: 1385 VYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVS 1444
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
R + S V +LIIDE+HLL D+RGPV+E +V+RT
Sbjct: 1445 RSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRT 1482
Score = 114 (45.2 bits), Expect = 1.5e-75, Sum P(2) = 1.5e-75
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G FE ++ L+ +R +V+ +
Sbjct: 253 EDLCCTLYEMLASPKSGDELQNELFELLGPEGFELIEKLLQNRSVIVERSLTCQNDNKFQ 312
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDK 336
L+ + ++ P+YG QVT+Q+E E+ + K
Sbjct: 313 TLQEQCKKFIGENAKPNYGCQVTIQSEQEKLLMK 346
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 702 (252.2 bits), Expect = 3.0e-73, Sum P(2) = 3.0e-73
Identities = 163/400 (40%), Positives = 242/400 (60%)
Query: 210 GSDSMDYNSAADGRNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAG 269
GS++++ N+ D + + WLR+ C ++ + + +++ I L + K E I
Sbjct: 256 GSNNLESNNVVDS-TYTIEWLREECS-VISIGLG-IPSEEIYNTIMSFLKNKK--ETIEE 310
Query: 270 DLLDLVGDSAFETVQDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTE 329
D++ L+G E + D+I +R ++ ++ G ASN + + Q + +
Sbjct: 311 DMIGLLGFDHLELIADIIKYRDSILGSVVSGY-------RASNHSGPLNHFSIQTKDEKD 363
Query: 330 SERQI---DKLXXXXXXXXXXGTEYAAEN----DVSSTSFSSLIEASERK-NPLDGLIGS 381
++Q+ DK +Y E D S SF ++++ D I
Sbjct: 364 FDKQLKKDDKKRYKNDQQQQQQQQYQEEQIKFIDHSQQSFEQPTIYNQKEFTGGDVCIDL 423
Query: 382 GQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKE-LDEFAQAAFHGYK 440
G ALP+GTVR + EV++P + EKLIEI E + E ++AAF K
Sbjct: 424 PYGGKI--ALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIK 481
Query: 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD-GYLHKDEFKIV 499
LNRIQSR+F++ Y +NENIL+ APTGAGKTNIA+++ILHEI + GYL KD FKI+
Sbjct: 482 KLNRIQSRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKII 541
Query: 500 YVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRK 559
Y+AP+KALA+E+ FS+ L L ++ +ELTGDMQL++ EL+ETQ+IVTTPEKWDVITRK
Sbjct: 542 YIAPLKALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRK 601
Query: 560 SSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
SSD++L+ LV+L+IIDE+HLL+++RGPV+E +VARTLRQV
Sbjct: 602 SSDVALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQV 641
Score = 286 (105.7 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/157 (39%), Positives = 95/157 (60%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+ N IQ+++F T+YYTN N+L+ +PTG+GKT A +++ + FRD + K+
Sbjct: 1324 FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMF----KVFRD----EPHMKV 1375
Query: 499 VYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+AP+KAL E + + L + ELTGD + L+ ++ TTPEKWD I+
Sbjct: 1376 VYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGIS 1435
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
R + S V LLIIDE+HL+ + RGP++E +V+R
Sbjct: 1436 RNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVSR 1472
Score = 86 (35.3 bits), Expect = 3.0e-73, Sum P(2) = 3.0e-73
Identities = 45/194 (23%), Positives = 87/194 (44%)
Query: 5 LPRLTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVY----RWEEAST 60
L LTN + FD +Q + K I++ + + + + E + + +E
Sbjct: 18 LRSLTNGNTQTFD-EQVVARNKEIMKKRNEKKKEKDRIIEKGQLTWSYFSDSKQNKEKEK 76
Query: 61 EVRQVYKQFIGAVVEFI-DGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKM 119
E RQ++ +F V+E I D E+PS+E + + P ++ K SK
Sbjct: 77 ENRQIFNKFKEIVLEMIGDDEIPSDEIASAVYETFMIVANPHKD-----------KASKC 125
Query: 120 QTL--IGHAVSDASVY-KVASLAQRLSKLQ-PSEHNVTLFSESLGNGSSDDFEFGSDLVF 175
++L I H+ ++Y K++ L +++ P E + +ES+ + D FE + +
Sbjct: 126 ESLRQIFHSFFKVAMYNKLSEQVGLLLQIKNPFESDSKASNESVQ--TIDSFE---SMEW 180
Query: 176 QAPARFLVDGSFED 189
Q P+++ + FED
Sbjct: 181 QLPSKYQLQ--FED 192
Score = 46 (21.3 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 98 GRPAEEEDNSVNRNIVEKKSKMQT-LIG-----HA--VSDASVYKVASLAQRLSKLQPSE 149
G P+EE N++ + KK ++ +IG H ++D Y+ + L +S + S
Sbjct: 287 GIPSEEIYNTIMSFLKNKKETIEEDMIGLLGFDHLELIADIIKYRDSILGSVVSGYRASN 346
Query: 150 HNVTLFSESLGNGSSDDFE 168
H+ L S+ DF+
Sbjct: 347 HSGPLNHFSIQTKDEKDFD 365
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 622 (224.0 bits), Expect = 7.2e-65, Sum P(2) = 7.2e-65
Identities = 124/212 (58%), Positives = 162/212 (76%)
Query: 390 ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRI 449
ALP+G+ R K +E V +PP+ ++ + + +K++DE Q F G++ LN IQS +
Sbjct: 261 ALPEGSKRDTFKTHESVYVPPSNKGDIEKIQH-VYVKDMDELGQKGFKGFEKLNVIQSIV 319
Query: 450 FQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD-GYLHKDEFKIVYVAPMKALA 508
F+ Y T EN+L+CAPTGAGKTNIAM++IL+ I +H G + KD+FKI+Y+APMKALA
Sbjct: 320 FEQAYKTKENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALA 379
Query: 509 AEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSM 567
E+T +F RL+PL + V+ELTGD QLSRNE+ +TQM+V TPEKWDVITRKS SD SL
Sbjct: 380 TEMTESFGKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLIN 439
Query: 568 LVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+V+LLIIDEVHLL+D+RGPVIE LVARTLRQV
Sbjct: 440 VVRLLIIDEVHLLHDERGPVIETLVARTLRQV 471
Score = 257 (95.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 60/173 (34%), Positives = 98/173 (56%)
Query: 423 IEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482
+ IK L A + + N IQ+++F +Y T+++ L+ APTG+GKT A +++ +
Sbjct: 1161 LPIKTLKNSKFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAMFRLL 1220
Query: 483 GQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELE 541
H G K+VY+AP+K+L E + + + V E++GD+ EL
Sbjct: 1221 QDH--PG------MKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDPEELA 1272
Query: 542 ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
+ +++TTPEKWD I+R + V L+++DEVHLL DRG V+EA+V+R
Sbjct: 1273 ASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSR 1325
Score = 86 (35.3 bits), Expect = 7.2e-65, Sum P(2) = 7.2e-65
Identities = 18/86 (20%), Positives = 45/86 (52%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIRHGMLLLKSE 307
+ ++ + ++L S + ++ G+L+DL+G FE D++ R ++V ++ L
Sbjct: 86 ETISQNLLQMLCSTRSDMDLQGELIDLLGVELFELAGDILEKRNKIVFEVKSQELAKVEH 145
Query: 308 KTASNSQSRMPSYGTQVTVQTESERQ 333
+ ++ +P + V+VQ+ S+ +
Sbjct: 146 ARQAKAKPAVPGFLQTVSVQSTSQNE 171
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 618 (222.6 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 125/217 (57%), Positives = 160/217 (73%)
Query: 384 GSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLN 443
G +T LP R K +EEV IP + + G K ++I+ELD+ + AF K LN
Sbjct: 430 GGSRIT-LPDNAQRIDNKQWEEVKIPASEPPPLSVGNKRVQIEELDDVGRLAFANCKELN 488
Query: 444 RIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503
RIQS +F Y++NEN+LVCAPTGAGKTN+AM+SI+H I H G +++DEFKIVY+AP
Sbjct: 489 RIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLEQGVINRDEFKIVYIAP 548
Query: 504 MKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSS-D 562
MKALAAE+ FS RL L + VRELTGD+QL++ E+ TQ++VTTPEKWDV+TRK S D
Sbjct: 549 MKALAAEMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGD 608
Query: 563 MSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
++L LV+LLIIDEVHLL+ +RGPV+EALVARTLR V
Sbjct: 609 VALISLVELLIIDEVHLLHGERGPVVEALVARTLRLV 645
Score = 326 (119.8 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
Identities = 74/197 (37%), Positives = 114/197 (57%)
Query: 403 YEEVIIPP--TPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENI 460
++ +++P P ++ P L + L + + + N IQ++IF +Y+T+ N+
Sbjct: 1297 FQHLVLPEHHPPLTELLPLRPL-PVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNV 1355
Query: 461 LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL- 519
L+ APTG+GKT +A I+I + Q+ + K+VY+AP+KAL E + R
Sbjct: 1356 LLGAPTGSGKTIVAEIAIFRALNQN--------PKCKVVYIAPLKALVKERIADWEQRFQ 1407
Query: 520 -SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVH 578
S L + V ELTGD+ + E+Q+IVTTPEKWD I+R V L++IDE+H
Sbjct: 1408 RSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIH 1467
Query: 579 LLNDDRGPVIEALVART 595
LL +DRGPVIE +V+RT
Sbjct: 1468 LLGEDRGPVIEVIVSRT 1484
Score = 84 (34.6 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 27/105 (25%), Positives = 55/105 (52%)
Query: 243 SQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQL---VD--AI 297
++L + L + + +L S + E + +L++++G FE V+ L+ R ++ +D A
Sbjct: 234 AKLDDEHLIIRVGDILGSQRSSEVLQNELMEILGFDYFELVEKLLMERDKIARQLDQFAT 293
Query: 298 RHGMLL-LKS---EKTASNSQS-RMPSYGTQVTVQTESERQIDKL 337
R ++ +K E AS + R P+ + V VQ+ E+Q+ K+
Sbjct: 294 RSRRVMEVKQKRMEAAASGGAAERRPTVASAVVVQSAQEKQLSKM 338
Score = 47 (21.6 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 282 TVQDL-ISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQV 324
+VQ L + H+++L++A + LLL ++ A+ ++ + SY +
Sbjct: 369 SVQQLRMQHQRKLLEAAQREPLLLSTK--AAKAEYKQSSYNQPI 410
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 563 (203.2 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 117/221 (52%), Positives = 153/221 (69%)
Query: 390 ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRI 449
ALP G+ R YEE IP + PG+ L++I +LD + F GY++LNR+QS +
Sbjct: 240 ALPVGSQRLEFPKYEEYFIPAGKPGGLWPGQTLVKISDLDGLCRRTFKGYQTLNRMQSLV 299
Query: 450 FQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFR----------DGYLHKDEFKIV 499
+ Y TNEN+LVCAPTGAGKT+ AM++ILH IGQ+ D +H ++FKIV
Sbjct: 300 YPIAYKTNENMLVCAPTGAGKTDAAMLTILHAIGQYVTPNPLQNTTATDFAVHTEDFKIV 359
Query: 500 YVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRK 559
YVAPMKALAAE+T RL+ L + RE TGDM L++ E+ +TQ+IVTTPEKWDV+TRK
Sbjct: 360 YVAPMKALAAEITEKLGKRLAWLGIRCREYTGDMHLTKTEIVQTQIIVTTPEKWDVVTRK 419
Query: 560 SS-DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+ D L V+LLIIDEVH+L+D+RG V+E+LVART RQV
Sbjct: 420 GTGDTELVQKVRLLIIDEVHMLHDERGAVLESLVARTERQV 460
Score = 287 (106.1 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 62/157 (39%), Positives = 99/157 (63%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
++ N +Q++IF T+Y+T N+L+ +PTG+GKT A +++ FR+ + K+
Sbjct: 1151 FQYFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWA----FRE----RPGSKV 1202
Query: 499 VYVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+APMKAL E + + +RL+ P+ + + ELTGD +++ +I+TTPEKWD I+
Sbjct: 1203 VYIAPMKALVRERVKDWGARLAQPMGLKLVELTGDNTPDTRTIKDADVIITTPEKWDGIS 1262
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
R V L+IIDE+HLL DRGP++E +V+R
Sbjct: 1263 RSWQTRGYVRQVSLVIIDEIHLLAGDRGPILEIIVSR 1299
Score = 131 (51.2 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 44/149 (29%), Positives = 67/149 (44%)
Query: 149 EHNVTLFSESLGNGSSDDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWY 208
+ N + L NG +D + +L +P +DG + + DE + F D Y
Sbjct: 29 QDNARKTTSVLANGDGEDDQ--DNL--SSPMSSGMDGH-DVWDFISDEELDEIDFDDNDY 83
Query: 209 -DGSDSMDYNSAADGRNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEI 267
DG+ + D + L WL CD + + S LS + L I LDS + +E+
Sbjct: 84 LDGAPNGD---GLPDTPYGLRWLTKKCDEVASRK-SGLSSNHLQDQISTFLDSSRSEDEL 139
Query: 268 AGDLLDLVGDSAFETVQDLISHRKQLVDA 296
L DL+G + V DLISHRK++ A
Sbjct: 140 QSSLTDLIGFDDLDFVIDLISHRKEVSGA 168
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 635 (228.6 bits), Expect = 1.4e-60, P = 1.4e-60
Identities = 168/501 (33%), Positives = 268/501 (53%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLGNG---SS 164
E++ +++ L+G D + + +L +++S +LQ + N+ E+ G S
Sbjct: 152 ERRREVEQLLG-PTDDTRYHVLVNLGKKISDYGGDKELQNMDDNI---DETYGVNVQFES 207
Query: 165 DDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSAADGRN 224
D+ E D + +GS + DES ++ + G G M R+
Sbjct: 208 DEEEGDEDQYGEVRD----EGSDDSEGEEADESSTLTA-NLG-NTGDVMMTKKKDLHPRD 261
Query: 225 FNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQ 284
+ WL+ R +I + D + I + D+ E L+ L+G + F+ ++
Sbjct: 262 IDAFWLQRQLSRFYNDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFIK 318
Query: 285 DLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXX 344
L HR+ ++ ++EK ++ ++V Q + + D +
Sbjct: 319 VLRQHRRMILYCTMLASAQSEAEKEKIINKMEADQDLSKVLYQLQETEKEDIIREERSRR 378
Query: 345 XXXGTEYAAENDVSSTSFSSLIEASERKN-PLDGLIGSGQGS--MAVTA--LPQGTVRKH 399
+ +D+ S S R+ L+ L + QGS MA LP G+ RK
Sbjct: 379 ERM--RKSRVDDLESMDIDHGESVSSRQLLDLEDLTFT-QGSHFMANKRCQLPDGSFRKQ 435
Query: 400 LKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNEN 459
KGYEEV +P E L+ I++L ++AQA F G+KSLNRIQS++F+T T+EN
Sbjct: 436 RKGYEEVHVPALKPKPFGDEETLVGIEKLPKYAQAGFEGFKSLNRIQSKLFKTTMETDEN 495
Query: 460 ILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518
+LVCAPTGAGKTN+A++++L EIG+H DG ++ +FKI+Y+APM++L E+ +F R
Sbjct: 496 LLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQEMVGSFGKR 555
Query: 519 LSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVH 578
L+ +IV ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+L+IIDE+H
Sbjct: 556 LASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGERTYTQLVRLIIIDEIH 615
Query: 579 LLNDDRGPVIEALVARTLRQV 599
LL+DDRGPV+E+L+ART+R V
Sbjct: 616 LLHDDRGPVLESLIARTIRNV 636
Score = 270 (100.1 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 65/188 (34%), Positives = 102/188 (54%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFA-QAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTG 467
PPT ++P + + L A ++ + + N IQ+++F VY +++N+ V APTG
Sbjct: 1294 PPTELLDLQP----LPVSALRNGAFESLYQNFPFFNPIQTQVFNAVYNSDDNVFVGAPTG 1349
Query: 468 AGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIV 526
+GKT A +IL + LH E + VY+ PM+ALA +V + + LN V
Sbjct: 1350 SGKTICAEFAILRML--------LHNAEGRCVYITPMEALAEQVFLDWHQKFQENLNKKV 1401
Query: 527 RELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGP 586
LTG+ L + +IV+TP+KWD+++R+ V L IIDEVHL+ D GP
Sbjct: 1402 VLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGGDNGP 1461
Query: 587 VIEALVAR 594
V+E + +R
Sbjct: 1462 VLEVICSR 1469
Score = 38 (18.4 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 350 EYAAENDVSSTSFSSLIEASERKNPLD---GLIGSGQGS 385
EY A +++ + SLI+ + R P L+G +G+
Sbjct: 12 EYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGT 50
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 581 (209.6 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 133/240 (55%), Positives = 163/240 (67%)
Query: 372 KNPLDGLIGSGQGSMAVTALPQGTVRKHLKGYEEVIIP-PTPTAQMKPGEK-LIEIKELD 429
KNP G I S G ALPQGT R +EE++IP P EK L++I +LD
Sbjct: 185 KNPDVGNIISITGKKF--ALPQGTTRDSYATHEELVIPYPENKPNKWISEKNLVKISDLD 242
Query: 430 EFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHF--- 486
Q F YK+LN++QS ++ Y TNEN+LVCAPTGAGKT++A+++ILH I Q
Sbjct: 243 FLCQGTFKNYKNLNKMQSLVYPVAYNTNENMLVCAPTGAGKTDVALLTILHTINQFVTET 302
Query: 487 --RDGY----LHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNEL 540
DG + DEFKIVYVAP+KALAAE+ +S +L L + VRELTGDMQL+R E+
Sbjct: 303 VTEDGDVSVDIDYDEFKIVYVAPLKALAAEIVEKYSKKLKWLGINVRELTGDMQLTRQEI 362
Query: 541 EETQMIVTTPEKWDVITRKSS-DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
TQ+IVTTPEKWDV+TRKS+ D L VKLLIIDEVHLL++DRG VIE LVARTLRQV
Sbjct: 363 INTQIIVTTPEKWDVVTRKSTGDSELVAKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV 422
Score = 271 (100.5 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
Identities = 61/158 (38%), Positives = 96/158 (60%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+K N +Q+ +F ++Y TN ++ V +PTG+GKT +A ++I H + F K+
Sbjct: 1111 FKYFNPMQTMVFHSLYNTNSSVFVGSPTGSGKTVVAELAIWHAFNE-FPSS-------KV 1162
Query: 499 VYVAPMKALAAEVTRTFSSRL--SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVI 556
VY+APMKAL E + R+ + + +V ELTGD + E++E +I+TTPEK+D I
Sbjct: 1163 VYIAPMKALVRERVDDWRERICKNTSHRLV-ELTGDSLPTIQEVKEADIIITTPEKFDGI 1221
Query: 557 TRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
+R V L+I+DE+HLL DRGP++E +V+R
Sbjct: 1222 SRNWQTRKFVQQVSLVIMDEIHLLASDRGPILEMIVSR 1259
Score = 83 (34.3 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 23/100 (23%), Positives = 49/100 (49%)
Query: 212 DSMDY-NSAADGRNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGD 270
DS+ + + + G + + + DAC++I +Q L + ++ + +L EE+
Sbjct: 61 DSLKHIGNKSSGADVVIHEIEDACNKISKQR--GLEKSEIYTLVKSLLLQSPTDEELQSS 118
Query: 271 LLDLVGDSAFETVQDLISHRKQLVDAIRHGMLLLKSEKTA 310
L D++G F+ + +I +++ A R L+ SE+ A
Sbjct: 119 LFDILGFDEFDLISKIIQNKRAF--ATRESSGLMSSEERA 156
>UNIPROTKB|H9L1I7 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035545 OMA:PRKERIM Uniprot:H9L1I7
Length = 771
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 156/503 (31%), Positives = 262/503 (52%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLGNG---SS 164
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G S
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 165 DDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGR 223
D+ E D+ + V D + GDE++ + + M R
Sbjct: 208 DEEEGDEDIYGE------VRDEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPR 261
Query: 224 NFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETV 283
+ + WL+ R +I + D + I + D+ E L+ L+G + F+ +
Sbjct: 262 DIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFI 318
Query: 284 QDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXX 343
+ L HR ++ ++EK + ++ Q E + + L
Sbjct: 319 KVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERS 377
Query: 344 XXXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVR 397
+ + D+ + EA + LD L+ + QGS MA LP G+ R
Sbjct: 378 RRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFA-QGSHFMANKRCQLPDGSFR 436
Query: 398 KHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTN 457
+ KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ ++
Sbjct: 437 RQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESD 496
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
EN+L+CAPTGAGKTN+A++ +L EIG+H DG ++ DEFKI+Y+APM++L E+ +F
Sbjct: 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAPMRSLVQEMVGSFG 556
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
RL+ + V ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+L+I+DE
Sbjct: 557 KRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLVILDE 616
Query: 577 VHLLNDDRGPVIEALVARTLRQV 599
+HLL+DDRGPV+E+LVAR +R +
Sbjct: 617 IHLLHDDRGPVLESLVARAIRNI 639
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 618 (222.6 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 158/502 (31%), Positives = 265/502 (52%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLG-NGSSD- 165
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G N +
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 166 DFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGRN 224
D E G + V+ + S +D + GDE++ + + M R+
Sbjct: 208 DEEEGDEDVY---GEVREEASDDD--MEGDEAVVRCTLSANLVASGELMSSKKKDLHPRD 262
Query: 225 FNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQ 284
+ WL+ R +I + D + I + D+ E L+ L+G + F+ ++
Sbjct: 263 IDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFIK 319
Query: 285 DLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXX 344
L HR ++ ++EK + ++ Q E + + L
Sbjct: 320 VLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERSR 378
Query: 345 XXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVRK 398
+ + D+ + EA + LD L+ + QGS MA LP G+ R+
Sbjct: 379 RERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT-QGSHFMANKRCQLPDGSFRR 437
Query: 399 HLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNE 458
KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ T+E
Sbjct: 438 QRKGYEEVHVPALKPKPFSSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDE 497
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+CAPTGAGKTN+A++ +L EIG+H DG ++ D+FKI+Y+APM++L E+ +F
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
RL+ + V ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+L+I+DE+
Sbjct: 558 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEI 617
Query: 578 HLLNDDRGPVIEALVARTLRQV 599
HLL+DDRGPV+EALVAR +R +
Sbjct: 618 HLLHDDRGPVLEALVARAIRNI 639
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 565 (203.9 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
Identities = 115/220 (52%), Positives = 154/220 (70%)
Query: 390 ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRI 449
ALP G+ R+ + YEE+I+P A GEKL+EI +D + F Y++LNRIQS +
Sbjct: 226 ALPAGSEREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLV 285
Query: 450 FQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL---------HKDEFKIVY 500
+ Y TNEN+L+CAPTGAGKT++A++++L I + L H+D+FKIVY
Sbjct: 286 YPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVY 345
Query: 501 VAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS 560
+APMKALAAEV RL+ L + RELTGDMQL++ E+ ETQ++VTTPEKWDV+TRKS
Sbjct: 346 IAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKS 405
Query: 561 -SDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
D L+ V+L+IIDEVH+L+D+RG VIE+LVART R V
Sbjct: 406 VGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLV 445
Score = 291 (107.5 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 64/157 (40%), Positives = 92/157 (58%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+ N +Q++ F T+Y+T+ NI V APTG+GKT A ++ + H Y + K+
Sbjct: 1132 FSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRAL--H---NY---PKSKV 1183
Query: 499 VYVAPMKALAAEVTRTFSSRL-SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+APMKAL E + + RL P+ + + ELTGD + +I+TTPEKWD IT
Sbjct: 1184 VYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKWDGIT 1243
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
R V L+I+DE+HLL DRGPV+E +V+R
Sbjct: 1244 RSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSR 1280
Score = 90 (36.7 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
Identities = 34/121 (28%), Positives = 62/121 (51%)
Query: 178 PARF-LVDGSFEDGAL-MGDESIAPSSFH-DGWYDGSDSMDYNSAADGRNFNLSWLRDAC 234
P F L D + E GAL + + I ++++ D +DS D N A +L+WL++ C
Sbjct: 24 PYSFSLSDSNAELGALSLKVDEILKTNYNLINPEDVTDS-DNNEFALK---DLTWLQNCC 79
Query: 235 DRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLV 294
+ I + S ++L L A+ L + + I DLL+LVG + + D++++ L+
Sbjct: 80 NEISQSSSTELDASVLFEAVIMSLKATEDQCAIQEDLLNLVGLDHIDLISDIVANSSNLI 139
Query: 295 D 295
+
Sbjct: 140 E 140
Score = 37 (18.1 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 129 DASVYKVASLAQR-LSKLQPSEHNVTLFSESLG 160
D S ++ SLAQR +SK + E LF S+G
Sbjct: 558 DNSQHEKYSLAQRDVSKSKNKELK-ELFKYSMG 589
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 617 (222.3 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 176/618 (28%), Positives = 304/618 (49%)
Query: 5 LPRLTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVY-------RWEE 57
LP +R+ D+A ++ K+ +Q+ +K R + + R ++ ++
Sbjct: 41 LPITDKEMRKMKMGDRA-IKGKAPVQDQKKKRKKKDDEKAQQFGRNVLVDNNELMGAYKP 99
Query: 58 ASTEVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKS 117
+ E +Q Y+ + +++ + G++P E A + D ++ EKK
Sbjct: 100 RTQETKQTYEVILSFILDAL-GDVPREVLCGAADEVLLTL-----KNDKFRDK---EKKK 150
Query: 118 KMQTLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFGSD----- 172
+++ L+G ++D + + +L++++S E N + + +F SD
Sbjct: 151 EVEALLG-PLTDDRIAVLINLSKKISDFSIEEENKPEGDGDIYENEGVNVQFDSDEEEDD 209
Query: 173 --LVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSAADGRNFNLSWL 230
+V + + E+G D + DG D R+ + W+
Sbjct: 210 GGMVNEIKGDSEEESEEEEGV---DTDYTATLKGDGHLT-EDEQKARGILHPRDIDAHWI 265
Query: 231 RDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHR 290
+ + + + + + + I + D+ E L+ L+G FE ++ L +R
Sbjct: 266 QRSLAKYFKDPLIAQQKQTEVIGILKNAADDRDAEN---QLVLLLGFDQFEFIKCLRQNR 322
Query: 291 KQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESER----QIDKLXXXXXXXXX 346
++ K + P + + E++ Q++K
Sbjct: 323 LMILYCTLLRQANEKERLQIEDDMRSRPELHPILALLQETDEGSVVQVEKSKRDAEKSKK 382
Query: 347 XGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVT----ALPQGTVRKHLKG 402
T AA +S+ + +A + L+ L S QGS ++ LP G+ R+ K
Sbjct: 383 AAT--AANEAISAGQW----QAGRKMLDLNDLTFS-QGSHLMSNKRCELPDGSYRRQKKS 435
Query: 403 YEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILV 462
YEE+ +P GEKL+ + EL ++AQ AF GYKSLNRIQSR+ + + E++L+
Sbjct: 436 YEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLL 495
Query: 463 CAPTGAGKTNIAMISILHEIGQHF-RDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521
CAPTGAGKTN+A++++L EIG H DG + DEFKIVY+APMK+L E+ +FS RL+P
Sbjct: 496 CAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAP 555
Query: 522 LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581
+ V E+TGD Q+S+ + TQ+IV TPEK+DV+TRK + + + +V+LLIIDE+HLL+
Sbjct: 556 FGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLH 615
Query: 582 DDRGPVIEALVARTLRQV 599
DDRGPV+E++V RT+RQ+
Sbjct: 616 DDRGPVLESIVVRTIRQM 633
Score = 289 (106.8 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 73/212 (34%), Positives = 116/212 (54%)
Query: 387 AVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGE-KLIEIKELDE-FAQAAFHGYKSLNR 444
A T LP +HL E PPT ++P + KE FA++ G+K N
Sbjct: 1271 AETVLPISF--RHLI-LPEKYPPPTELLDLQPLPISAVTNKEFQTVFAES---GFKVFNP 1324
Query: 445 IQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504
IQ+++F+TV+ +NEN++VCAP G+GKT IA +++L +HF + E K VY+ PM
Sbjct: 1325 IQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVL----RHFEN----TPEAKAVYITPM 1376
Query: 505 KALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDM 563
+ +A +V + RL P + + LTG+ + + Q+I++TPE+WD I+R+
Sbjct: 1377 EDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQR 1436
Query: 564 SLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
VKL I D++H++ G V E + +RT
Sbjct: 1437 KSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 617 (222.3 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 176/618 (28%), Positives = 304/618 (49%)
Query: 5 LPRLTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVY-------RWEE 57
LP +R+ D+A ++ K+ +Q+ +K R + + R ++ ++
Sbjct: 41 LPITDKEMRKMKMGDRA-IKGKAPVQDQKKKRKKKDDEKAQQFGRNVLVDNNELMGAYKP 99
Query: 58 ASTEVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKS 117
+ E +Q Y+ + +++ + G++P E A + D ++ EKK
Sbjct: 100 RTQETKQTYEVILSFILDAL-GDVPREVLCGAADEVLLTL-----KNDKFRDK---EKKK 150
Query: 118 KMQTLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFGSD----- 172
+++ L+G ++D + + +L++++S E N + + +F SD
Sbjct: 151 EVEALLG-PLTDDRIAVLINLSKKISDFSIEEENKPEGDGDIYENEGVNVQFDSDEEEDD 209
Query: 173 --LVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSAADGRNFNLSWL 230
+V + + E+G D + DG D R+ + W+
Sbjct: 210 GGMVNEIKGDSEEESEEEEGV---DTDYTATLKGDGHLT-EDEQKARGILHPRDIDAHWI 265
Query: 231 RDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHR 290
+ + + + + + + I + D+ E L+ L+G FE ++ L +R
Sbjct: 266 QRSLAKYFKDPLIAQQKQTEVIGILKNAADDRDAEN---QLVLLLGFDQFEFIKCLRQNR 322
Query: 291 KQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESER----QIDKLXXXXXXXXX 346
++ K + P + + E++ Q++K
Sbjct: 323 LMILYCTLLRQANEKERLQIEDDMRSRPELHPILALLQETDEGSVVQVEKSKRDAEKSKK 382
Query: 347 XGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVT----ALPQGTVRKHLKG 402
T AA +S+ + +A + L+ L S QGS ++ LP G+ R+ K
Sbjct: 383 AAT--AANEAISAGQW----QAGRKMLDLNDLTFS-QGSHLMSNKRCELPDGSYRRQKKS 435
Query: 403 YEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILV 462
YEE+ +P GEKL+ + EL ++AQ AF GYKSLNRIQSR+ + + E++L+
Sbjct: 436 YEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLL 495
Query: 463 CAPTGAGKTNIAMISILHEIGQHF-RDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521
CAPTGAGKTN+A++++L EIG H DG + DEFKIVY+APMK+L E+ +FS RL+P
Sbjct: 496 CAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAP 555
Query: 522 LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581
+ V E+TGD Q+S+ + TQ+IV TPEK+DV+TRK + + + +V+LLIIDE+HLL+
Sbjct: 556 FGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLH 615
Query: 582 DDRGPVIEALVARTLRQV 599
DDRGPV+E++V RT+RQ+
Sbjct: 616 DDRGPVLESIVVRTIRQM 633
Score = 289 (106.8 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 73/212 (34%), Positives = 116/212 (54%)
Query: 387 AVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGE-KLIEIKELDE-FAQAAFHGYKSLNR 444
A T LP +HL E PPT ++P + KE FA++ G+K N
Sbjct: 1271 AETVLPISF--RHLI-LPEKYPPPTELLDLQPLPISAVTNKEFQTVFAES---GFKVFNP 1324
Query: 445 IQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504
IQ+++F+TV+ +NEN++VCAP G+GKT IA +++L +HF + E K VY+ PM
Sbjct: 1325 IQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVL----RHFEN----TPEAKAVYITPM 1376
Query: 505 KALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDM 563
+ +A +V + RL P + + LTG+ + + Q+I++TPE+WD I+R+
Sbjct: 1377 EDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQR 1436
Query: 564 SLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
VKL I D++H++ G V E + +RT
Sbjct: 1437 KSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 616 (221.9 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 158/502 (31%), Positives = 265/502 (52%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLG-NGSSD- 165
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G N +
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 166 DFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGRN 224
D E G + V+ + S +D + GDE++ + + M R+
Sbjct: 208 DEEEGDEDVY---GEVREEASDDD--MEGDEAVVRCTLSANLVASGELMSSKKKDLHPRD 262
Query: 225 FNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQ 284
+ WL+ R +I + D + I + D+ E L+ L+G + F+ ++
Sbjct: 263 IDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFIK 319
Query: 285 DLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXX 344
L HR ++ ++EK + ++ Q E + + L
Sbjct: 320 VLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERSR 378
Query: 345 XXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVRK 398
+ + D+ + EA + LD L+ + QGS MA LP G+ R+
Sbjct: 379 RERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT-QGSHFMANKRCQLPDGSFRR 437
Query: 399 HLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNE 458
KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ T+E
Sbjct: 438 QRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDE 497
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+CAPTGAGKTN+A++ +L EIG+H DG ++ D+FKI+Y+APM++L E+ +F
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
RL+ + V ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+L+I+DE+
Sbjct: 558 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEI 617
Query: 578 HLLNDDRGPVIEALVARTLRQV 599
HLL+DDRGPV+EALVAR +R +
Sbjct: 618 HLLHDDRGPVLEALVARAIRNI 639
Score = 255 (94.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 62/189 (32%), Positives = 101/189 (53%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKS--LNRIQSRIFQTVYYTNENILVCAPT 466
PPT ++P + + L A + + K N IQ+++F TVY +++N+ V APT
Sbjct: 1297 PPTELLDLQP----LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 1352
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMI 525
G+GKT A +IL + L E + VY+ PM+ALA +V + + LN
Sbjct: 1353 GSGKTICAEFAILRML--------LQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1404
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V LTG+ L + +I++TPEKWD+++R+ + L ++DEVHL+ + G
Sbjct: 1405 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 1464
Query: 586 PVIEALVAR 594
PV+E + +R
Sbjct: 1465 PVLEVICSR 1473
Score = 38 (18.4 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 350 EYAAENDVSSTSFSSLIEASERKNPLD---GLIGSGQGS 385
EY A +++ + SLI+ + R P L+G +G+
Sbjct: 12 EYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGT 50
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 615 (221.5 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 158/502 (31%), Positives = 265/502 (52%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLG-NGSSD- 165
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G N +
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 166 DFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGRN 224
D E G + V+ + S +D + GDE++ + + M R+
Sbjct: 208 DEEEGDEDVY---GEVREEASDDD--MEGDEAVVRCTLSANLVASGELMSSKKKDLHPRD 262
Query: 225 FNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQ 284
+ WL+ R +I + D + I + D+ E L+ L+G + F+ ++
Sbjct: 263 IDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFIK 319
Query: 285 DLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXX 344
L HR ++ ++EK + ++ Q E + + L
Sbjct: 320 VLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERSR 378
Query: 345 XXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVRK 398
+ + D+ + EA + LD L+ + QGS MA LP G+ R+
Sbjct: 379 RERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT-QGSHFMANKRCQLPDGSFRR 437
Query: 399 HLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNE 458
KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ T+E
Sbjct: 438 QRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDE 497
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+CAPTGAGKTN+A++ +L EIG+H DG ++ D+FKI+Y+APM++L E+ +F
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
RL+ + V ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+L+I+DE+
Sbjct: 558 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLVILDEI 617
Query: 578 HLLNDDRGPVIEALVARTLRQV 599
HLL+DDRGPV+EALVAR +R +
Sbjct: 618 HLLHDDRGPVLEALVARAIRNI 639
Score = 251 (93.4 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 62/189 (32%), Positives = 101/189 (53%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKS--LNRIQSRIFQTVYYTNENILVCAPT 466
PPT ++P + + L A + + K N IQ+++F TVY +++N+ V APT
Sbjct: 1297 PPTELLDLQP----LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 1352
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMI 525
G+GKT A +IL + L E + VY+ PM+ALA +V + + L+
Sbjct: 1353 GSGKTICAEFAILRML--------LQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLSKK 1404
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V LTG+ L + +IV+TPEKWD+++R+ + L ++DEVHL+ + G
Sbjct: 1405 VVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 1464
Query: 586 PVIEALVAR 594
PV+E + +R
Sbjct: 1465 PVLEVICSR 1473
Score = 38 (18.4 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 350 EYAAENDVSSTSFSSLIEASERKNPLD---GLIGSGQGS 385
EY A +++ + SLI+ + R P L+G +G+
Sbjct: 12 EYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGT 50
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 614 (221.2 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 157/502 (31%), Positives = 265/502 (52%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLG-NGSSD- 165
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G N +
Sbjct: 152 ERRREIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 166 DFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGRN 224
D E G + V+ + S +D + GDE++ + + M R+
Sbjct: 208 DEEEGDEDVY---GEVREEASDDD--MEGDEAVVRCTLSANLVASGELMSSKKKDLHPRD 262
Query: 225 FNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQ 284
+ WL+ R +I + D + I + D+ E L+ L+G + F+ ++
Sbjct: 263 IDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFIK 319
Query: 285 DLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXX 344
L HR ++ ++EK + ++ Q E + + L
Sbjct: 320 VLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERSR 378
Query: 345 XXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVRK 398
+ + D+ + EA + LD L+ + QGS MA LP G+ R+
Sbjct: 379 RERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT-QGSHFMANKRCQLPDGSFRR 437
Query: 399 HLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNE 458
KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ T+E
Sbjct: 438 QRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDE 497
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+CAPTGAGKTN+A++ +L EIG+H DG ++ D+FKI+Y+APM++L E+ +F
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
RL+ + V ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+L+++DE+
Sbjct: 558 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVLDEI 617
Query: 578 HLLNDDRGPVIEALVARTLRQV 599
HLL+DDRGPV+EALVAR +R +
Sbjct: 618 HLLHDDRGPVLEALVARAIRNI 639
Score = 255 (94.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 62/189 (32%), Positives = 101/189 (53%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKS--LNRIQSRIFQTVYYTNENILVCAPT 466
PPT ++P + + L A + + K N IQ+++F TVY +++N+ V APT
Sbjct: 1300 PPTELLDLQP----LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 1355
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMI 525
G+GKT A +IL + L E + VY+ PM+ALA +V + + LN
Sbjct: 1356 GSGKTICAEFAILRML--------LQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1407
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V LTG+ L + +I++TPEKWD+++R+ + L ++DEVHL+ + G
Sbjct: 1408 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 1467
Query: 586 PVIEALVAR 594
PV+E + +R
Sbjct: 1468 PVLEVICSR 1476
Score = 38 (18.4 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 350 EYAAENDVSSTSFSSLIEASERKNPLD---GLIGSGQGS 385
EY A +++ + SLI+ + R P L+G +G+
Sbjct: 12 EYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGT 50
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 605 (218.0 bits), Expect = 2.3e-57, P = 2.3e-57
Identities = 182/569 (31%), Positives = 288/569 (50%)
Query: 55 WEEASTEVRQVYKQFIGAVVEFIDGEMPSEEFG---EI-ALSAYHLFGRPAEEEDNSVNR 110
++ + E R Y+ +G + + + G+ PS G EI A+ F P ++ +
Sbjct: 110 YQPKTKETRAAYEAMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLL 169
Query: 111 NIVEKKSKMQTL-IGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEF 169
N +E Q + IG ++D + R + + + ++ + E N DD E
Sbjct: 170 NKIENHEFDQLVSIGKLITDFQEGGDSG-GGRANDDEGLDDDLGVAVEFEEN-EEDDEES 227
Query: 170 GSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSAADGRNFNLSW 229
D+V + D G + D I + D D ++ + N ++ + W
Sbjct: 228 DPDMVEEDDDEE-DDEPTRTGGMQVDAGI---NDEDAG-DANEGTNLNV----QDIDAYW 278
Query: 230 LRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISH 289
L+ + Q I LA + ++L ++ + LL + F V+ L+ +
Sbjct: 279 LQRKISQAYEQQIDPQQCQVLAEELLKIL-AEGDDRVVEDKLLMHLQYEKFSLVKFLLRN 337
Query: 290 RKQLVDAIRHGMLLLKSEKTASNSQSRM--PS--------YGTQVTVQTESERQIDKLXX 339
R ++V R + E+ + R P + T+ T + E E + K
Sbjct: 338 RLKVVWCTRLARAEDQEERNRIEEEMRGLGPELTAIVEQLHATRATAK-EREENLQKSIN 396
Query: 340 XXXXXX---XXGTEYAAENDVSST-SFSSLIEASERKNPLDGLIGSGQGSMAVTA----L 391
G DV+ S S ++ + L+ L QG + + L
Sbjct: 397 EEARRLKDETGGDGGRGRRDVADRDSESGWVKGQRQMLDLESL-AFDQGGLLMANKKCDL 455
Query: 392 PQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQ 451
P G+ R H KGY+EV +P + ++ EKL++I E+ ++AQ AF G + LNR+QS+++
Sbjct: 456 PPGSYRSHGKGYDEVHVPWV-SKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYD 514
Query: 452 TVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAE 510
T + ENIL+CAPTGAGKTN+AM++IL ++ + DG + ++KIVYVAPMKAL AE
Sbjct: 515 TALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAE 574
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVK 570
V S+RL +IVREL+GD L+ E+EETQ+IVTTPEKWD+ITRKS D + + LV+
Sbjct: 575 VVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVR 634
Query: 571 LLIIDEVHLLNDDRGPVIEALVARTLRQV 599
LLIIDE+HLL+D+RGPV+E++VARTLRQ+
Sbjct: 635 LLIIDEIHLLHDNRGPVLESIVARTLRQI 663
Score = 294 (108.6 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 66/188 (35%), Positives = 107/188 (56%)
Query: 409 PPTPTAQMKPGEKLIEIKEL-DEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTG 467
PPT ++P + + L + + + +K N +Q+++F +Y TN+N+LV APTG
Sbjct: 1321 PPTELLDLQP----LPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTG 1376
Query: 468 AGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIV 526
+GKT A +IL H +G ++VY+AP++A+A E R + + L + V
Sbjct: 1377 SGKTICAEFAILRN--HH--EG--PDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRV 1430
Query: 527 RELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGP 586
ELTG+ L LE+ Q+I++TPEKWD ++R+ V L I+DE+HL+ GP
Sbjct: 1431 VELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGP 1490
Query: 587 VIEALVAR 594
V+E +V+R
Sbjct: 1491 VLEVIVSR 1498
Score = 42 (19.8 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 27 SILQNLQKPRNTTNSLDESETARKIVY 53
+ILQ L+ RNT + + + KIVY
Sbjct: 540 TILQQLEMNRNTDGTYNHGDY--KIVY 564
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 594 (214.2 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
Identities = 116/219 (52%), Positives = 161/219 (73%)
Query: 380 GSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGY 439
GS S LP+G+ R+ KGYEE+ +P A + E+L++IKEL E++ AF
Sbjct: 458 GSRLMSNKAVKLPEGSFRRTGKGYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNT 517
Query: 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGY-LHKDEFKI 498
+SLNRIQS ++ + T+ENIL+CAPTGAGKTN+AM+ IL+E+ +H R+ + FKI
Sbjct: 518 QSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKI 577
Query: 499 VYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITR 558
VY+AP+KAL E+ FS RL+P N+ V ELTGD QL++ ++ ETQ+IVTTPEKWD+ITR
Sbjct: 578 VYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITR 637
Query: 559 KSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLR 597
K++D+S LV+L+IIDEVHLL+D+RGPV+E++VAR R
Sbjct: 638 KANDLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFR 676
Score = 202 (76.2 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 51/197 (25%), Positives = 97/197 (49%)
Query: 403 YEEVIIP---PTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNEN 459
++ +I+P P PT + + F + + +K N+IQ+++F +VY TN++
Sbjct: 1324 FQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFI-SLYPNFKFFNKIQTQVFNSVYKTNDS 1382
Query: 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519
+ + AP G+GKT A +++LH Q +D VY+AP++ + + +
Sbjct: 1383 VFIGAPNGSGKTVCAELALLHHWSQ--------EDYGTAVYIAPIQEIVDRRYEEWYGKF 1434
Query: 520 SPLN--MIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
S L ++ +LTG+ ++ +I TP +WD ++++ M V I DE+
Sbjct: 1435 SDLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDEL 1494
Query: 578 HLLNDDRGPVIEALVAR 594
LL GP+ E +++R
Sbjct: 1495 QLLGGFYGPLYEIVISR 1511
Score = 42 (19.8 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
Identities = 22/104 (21%), Positives = 47/104 (45%)
Query: 2 LLQLPRLTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYRWEEASTE 61
+L+ LT+ RE +D +++Q+ L + Q P ++ D I+ +++S +
Sbjct: 128 ILKYNPLTDETREVYDYILSFIQQ--YLGD-QSPEILRSAAD------LIIELLKDSSLD 178
Query: 62 VRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEED 105
+ KQ + E + E+P + F ++ L E+E+
Sbjct: 179 EQGRKKQ----IEEVLSTELPQDRFSQLVNLGNRLTDYTVEQEE 218
Score = 40 (19.1 bits), Expect = 6.0e-57, Sum P(2) = 6.0e-57
Identities = 16/92 (17%), Positives = 42/92 (45%)
Query: 52 VYRWEEASTEVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRN 111
+ ++ + E R+VY + + +++ + P EI SA L + D+S++
Sbjct: 128 ILKYNPLTDETREVYDYILSFIQQYLGDQSP-----EILRSAADLIIELLK--DSSLDEQ 180
Query: 112 IVEKKSKMQTLIGHAVSDASVYKVASLAQRLS 143
+K +++ ++ + ++ +L RL+
Sbjct: 181 --GRKKQIEEVLSTELPQDRFSQLVNLGNRLT 210
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 599 (215.9 bits), Expect = 9.9e-57, P = 9.9e-57
Identities = 159/558 (28%), Positives = 282/558 (50%)
Query: 51 IVYRWEEASTEVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNR 110
IVYR + E RQ Y+ + + E + G+ P + + +A + + D +R
Sbjct: 100 IVYR--PKTQETRQTYEVLLSFIQEAL-GDQPRDI---LCGAADEILA--VLKNDRLKDR 151
Query: 111 NIVEKKSKMQTLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFG 170
E+K + +L+G AV+D + +L ++++ V + + N D +G
Sbjct: 152 ---ERKKDIDSLLG-AVTDERFALLVNLGKKITDF--GSDAVNALTAAPNNEEQIDETYG 205
Query: 171 SDLVFQAPARFLVDGSF-----EDGALMGDESIAPSSFHD---GWYDGSDSMDYNSAADG 222
++ F+ + + +D G+E+ + H + ++++ +
Sbjct: 206 INVQFEESEEESDNDMYGEIRDDDAQDEGEEARIDHTLHAENLANEEAANNVKKERSLHP 265
Query: 223 RNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFET 282
+ + WL+ + + ++ S+ A + ++L + L+ L+G F+
Sbjct: 266 LDIDAYWLQRCLSKFYKDAMVSQSK---AADVLKILKDAADDRDCENQLVLLLGYDCFDF 322
Query: 283 VQDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXX 342
++ L +R+ ++ SE+ + R S ++ Q ++ + D+
Sbjct: 323 IKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRGNSALAKILRQLDTGKSEDQ-EEGEA 381
Query: 343 XXXXXGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVTALPQGTVRKHLKG 402
G A + ++ + + + GS + LP G+ RK KG
Sbjct: 382 RGSKRGKGDAEDGGAAAAGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKG 441
Query: 403 YEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILV 462
YEEV +P E+L + +L ++ Q F G+K+LNRIQSR+++ ++EN+L+
Sbjct: 442 YEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLL 501
Query: 463 CAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521
CAPTGAGKTN+A+++++ EIG+H DG ++ +FKI+YVAPMK+L E+ F RL+
Sbjct: 502 CAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLAC 561
Query: 522 LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581
N+ V ELTGD QL+R ++ TQ+IV TPEKWD+ITRK + + LV+L+IIDE+HLL+
Sbjct: 562 YNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLH 621
Query: 582 DDRGPVIEALVARTLRQV 599
D+RGPV+EALVART+R +
Sbjct: 622 DERGPVLEALVARTIRNI 639
Score = 237 (88.5 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 64/210 (30%), Positives = 110/210 (52%)
Query: 387 AVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHG--YKSLNR 444
A T LP +HL E +PPT ++P + I L + +F+ + N
Sbjct: 1278 AETQLPVSF--RHLI-LPEKNMPPTELLDLQP----LPISALRQPKFESFYSQRFPQFNP 1330
Query: 445 IQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504
IQ+++F VY ++EN+ V APTG+GK IA +I+ + + + + VY+
Sbjct: 1331 IQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRL--------FTTQSDARCVYLVSE 1382
Query: 505 KALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMS 564
+ALA V + S+ L++ V +LTG+ + + Q+++TT +KWDV++R+
Sbjct: 1383 EALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRK 1442
Query: 565 LSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
LV L I+DE+ L+ + GPV+E + +R
Sbjct: 1443 NVQLVNLFIVDELQLVGGEEGPVLEIVCSR 1472
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 599 (215.9 bits), Expect = 1.1e-56, P = 1.1e-56
Identities = 151/407 (37%), Positives = 227/407 (55%)
Query: 211 SDSMDYNSAADGRNFNLSWLR-DACDRI-VRQSISQLSRD-DLAMAIC-RVLDS-DKPG- 264
S D + D +N N + + D +++ IS+ RD DL+ + + L+ +P
Sbjct: 311 SQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISEFERDHDLSKQLAEKTLNILRQPNV 370
Query: 265 EEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQV 324
L+DL + ++ LI + KQ I + LL K+E + V
Sbjct: 371 RRCEQQLVDLFTIDKLDFLK-LIINNKQ---TILYCTLLAKAENDQERKKIEDEMSSNPV 426
Query: 325 TVQTESERQIDKLXXXXXXXXXXGTEYAAENDVSSTSFSSLIEASERKNPLDGL----IG 380
T+ + + +++ TE + + DV + E K P L +
Sbjct: 427 TLSILNRLKGNEVTAATTEKTIEKTE-SNKKDVEMKQQQQQ-QQDEIKKPKKLLNLEELS 484
Query: 381 SGQGSMAVT----ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAF 436
QGS +T P+G+ R+ KG+EE+ +P P E+LI I+EL E+++ F
Sbjct: 485 FQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWSRLPF 544
Query: 437 H--GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHF-RD-GYLH 492
G KSLNR+QS++F + T+ N+L+ APT +GKTN+AM++ILHEIG++ RD G +
Sbjct: 545 EESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIR 604
Query: 493 KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEK 552
D FKIVY+APMK+L E+ FS RL ++V ELTGD L+ ++ ETQ+IVTTPEK
Sbjct: 605 LDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEK 664
Query: 553 WDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
WD+ITRKS D + + LVKL+IIDE+HLL+D+RGPV+E +VARTLR +
Sbjct: 665 WDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMI 711
Score = 261 (96.9 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 64/192 (33%), Positives = 109/192 (56%)
Query: 409 PPT-PTAQMKPGEKLIEIKEL-DEFAQAAFHGYKSL-NRIQSRIFQTVYYTNENILVCAP 465
PP P ++P + I+ L D A++ F S+ N IQ+++F +Y +N+N + AP
Sbjct: 1366 PPCRPLLDLQP----LPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAP 1421
Query: 466 TGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL---SPL 522
T +GKT A I+++ Q+ + K+VY+APM+ LA+ + +S++ SP
Sbjct: 1422 TNSGKTVCAEIALIRCFKQN--------PKAKVVYLAPMQDLASVRLKDWSNKFGVKSPF 1473
Query: 523 NMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582
++V +LTGD L+ + +IVT EKWD+++RK + LLI+DE+HL+
Sbjct: 1474 GLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGG 1533
Query: 583 DRGPVIEALVAR 594
+ GP +E +V+R
Sbjct: 1534 EYGPTMEIVVSR 1545
Score = 37 (18.1 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 10 NSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDE 44
+ L P +ID ++QRK + ++ + + L E
Sbjct: 327 SKLISPNEIDSFWIQRK--ISEFERDHDLSKQLAE 359
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 598 (215.6 bits), Expect = 1.1e-56, P = 1.1e-56
Identities = 163/450 (36%), Positives = 243/450 (54%)
Query: 161 NGSSDDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSAA 220
N ++ +GSDL G+ +D + S S +G Y+ D + S
Sbjct: 31 NPANAQLTYGSDLDLDLDENSSSAGTVDD--VWDLISFDEESTSEGIYEIDDLL---SPP 85
Query: 221 DGRNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAF 280
++ +WL+ C + Q + +++A I L +D +E+ L ++VG
Sbjct: 86 VSEQYDQTWLQQRCQLLASQQPG-VELNEVAQQIIAALATDSGDDELQMSLAEIVGFDDL 144
Query: 281 ETVQDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXX 340
+ V +LI+HRK+++ ++ G KT + + + S G +QT +ER+ L
Sbjct: 145 DFVIELIAHRKEILRSLDAG-----PGKTQAQTDG-LAS-GQ---LQTRAERE-QALRRQ 193
Query: 341 XXXXXXXGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVTALPQGTVRKHL 400
A + + + + + +N L L G G LP G+ +
Sbjct: 194 DFEHKNAALLPAQTRE--GPKYPHVFKTHDSRNIL-ALNGKSYG------LPLGSRQIDE 244
Query: 401 KGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENI 460
Y EV +P + + +KL+ I +D Q F GYK+LNR+QS ++ Y T+EN+
Sbjct: 245 PKYTEVEVPASKVGTIGQQQKLVPISSMDGLCQGTFKGYKTLNRMQSLLYDVAYKTSENM 304
Query: 461 LVCAPTGAGKTNIAMISILHEIGQHF------RDGYLH----KDEFKIVYVAPMKALAAE 510
L+CAPTGAGKT+ AM++IL+ +G++ + G D+FKIVYVAPMKALAAE
Sbjct: 305 LICAPTGAGKTDAAMLTILNAVGKNTVPNPAEQPGATEFSVLVDDFKIVYVAPMKALAAE 364
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSS-DMSLSMLV 569
VT RL+ L + VRELTGDMQL++ E+ ETQ+IVTTPEKWDV+TRKS+ D L V
Sbjct: 365 VTEKLGKRLAWLGIKVRELTGDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQKV 424
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+LLIIDEVH+L+D+RG VIE+LVART RQV
Sbjct: 425 RLLIIDEVHMLHDERGAVIESLVARTQRQV 454
Score = 276 (102.2 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 60/157 (38%), Positives = 95/157 (60%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
++ N +Q+++F +Y+T N+L+ +PTG+GKT A +++ FR+ + K+
Sbjct: 1130 FQYFNPMQTQLFHVLYHTAANVLLGSPTGSGKTVAAELAMWWA----FRE----RPGSKV 1181
Query: 499 VYVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+APMKAL E + RL+ P+ + + ELTGD + + +I+TTPEKWD I+
Sbjct: 1182 VYIAPMKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGIS 1241
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
R V L+IIDE+HLL DRGP++E +V+R
Sbjct: 1242 RSWQTRDYVRKVSLVIIDEIHLLGGDRGPILEIIVSR 1278
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 557 (201.1 bits), Expect = 3.3e-56, Sum P(2) = 3.3e-56
Identities = 119/217 (54%), Positives = 157/217 (72%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPG--EKLIEIKELDEFAQAAFHGYKSLNRIQSR 448
LP GT R +EE+IIP A K KL++I +LD F + F Y++LN+IQS
Sbjct: 236 LPVGTTRMSYNTHEEIIIPAADQASNKNYLYTKLLKISDLDHFCKTVFP-YETLNQIQSL 294
Query: 449 IFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQH-FRDGY----LHKDEFKIVYVAP 503
++ Y TNEN+L+CAPTGAGKT+IA+++I++ I Q +G + D+FK++YVAP
Sbjct: 295 VYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAP 354
Query: 504 MKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSS-D 562
+KALAAE+ FS +L+P N+ VRELTGDMQL++ E+ TQ+IVTTPEKWDV+TRK++ D
Sbjct: 355 LKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGD 414
Query: 563 MSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
L VKLLIIDEVHLL++DRG VIE LVARTLRQV
Sbjct: 415 NDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV 451
Score = 280 (103.6 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 73/208 (35%), Positives = 116/208 (55%)
Query: 394 GTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQA-----AFHGYKSLNRIQSR 448
G H ++ +I P T Q K L++++ L A + + +K N +Q+
Sbjct: 1091 GCESTHAISFQHLIRPFNETLQTK----LLKLRPLPTSALQNPLIESIYPFKYFNPMQTM 1146
Query: 449 IFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA 508
F T+Y TNEN V +PTG+GKT +A ++I H F+ + K KIVY+APMKAL
Sbjct: 1147 TFYTLYNTNENAFVGSPTGSGKTIVAELAIWHA----FKT-FPGK---KIVYIAPMKALV 1198
Query: 509 AEVTRTFSSRLSPL--NMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLS 566
E + +++P+ + +V ELTGD ++ + +++TTPEK+D I+R
Sbjct: 1199 RERVDDWRKKITPVTGDKVV-ELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFV 1257
Query: 567 MLVKLLIIDEVHLLNDDRGPVIEALVAR 594
V L+I+DE+HLL DRGP++E +V+R
Sbjct: 1258 QDVSLIIMDEIHLLASDRGPILEMIVSR 1285
Score = 69 (29.3 bits), Expect = 3.3e-56, Sum P(2) = 3.3e-56
Identities = 23/95 (24%), Positives = 50/95 (52%)
Query: 236 RIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVD 295
+++ ++ + LS + L + +++ + +E+ +LLD +G + V L+ HR+ +V
Sbjct: 103 KLINEAETTLSSNVLLETVLQMVYKHQK-QELEKELLDFLGTGNIDLVSLLLQHRRMIVA 161
Query: 296 A-IRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTE 329
I +LL+K+ A NS P + TQ ++ +
Sbjct: 162 TPIETTILLIKN---AVNST---PEFLTQQDIRNQ 190
Score = 40 (19.1 bits), Expect = 3.7e-53, Sum P(2) = 3.7e-53
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 313 SQSRMPSYGTQVT-VQTESERQIDKLXXXXXXXXXXGTEYAAENDVSSTSFSSLIEASER 371
S+ +P + ++ VQ + + Q +L + D+S S+I++ +
Sbjct: 32 SKISLPDFDDELKKVQKDEQNQRTELTVLSQDRNDWDDIFEEFKDISFAQLQSIIDSYKT 91
Query: 372 KN 373
KN
Sbjct: 92 KN 93
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 588 (212.0 bits), Expect = 1.5e-55, P = 1.5e-55
Identities = 136/351 (38%), Positives = 214/351 (60%)
Query: 266 EIAGDLLDLVGDSAFETVQDLISHRKQLVDAIRHGML--------LLKSEKTASNSQSRM 317
++ DL++L + V L+++R ++V R + L++SE + + +
Sbjct: 346 DVENDLMELFDYDFPDLVAKLVTNRDKVVWTTRWRRVAEDADARNLVESEMVEAGHRGIL 405
Query: 318 PSY-GTQVTVQTESERQIDKLXXXXXXXXXXGTEYAAENDVSSTSFSSLIEASERKN--P 374
G V+ +S R ++ AAE T+ L+ + K
Sbjct: 406 DEIRGKTVSRDNDSGRPEKRIKMDLMDVDLPKAPAAAEE--KKTADGGLVRGLQPKRLIN 463
Query: 375 LDGLIGSGQGSMAVT----ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDE 430
L+ L+ QG+ +T LPQG+ ++ KGYEE+ +P P ++ +PGE+ + I EL E
Sbjct: 464 LENLVFH-QGNHLMTNPNVKLPQGSTKRTFKGYEEIHVPQ-PKSKQEPGERKVAISELPE 521
Query: 431 FAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQH--FRD 488
+A+ F K LNRIQ++ + + + + N+LVCAPTG+GKTN+AM+SIL E+G++ +
Sbjct: 522 WARIGFGDAKELNRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQT 581
Query: 489 GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVT 548
G + D+FKIVY++P+KAL E F RL+P + V ELTGD QL++ ++ ETQ+IVT
Sbjct: 582 GEIMLDDFKIVYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVT 641
Query: 549 TPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
TPEK+DVITRK+S+ S + LV+L+IIDE+HLL+D+RGPVIE++V+RT+RQV
Sbjct: 642 TPEKFDVITRKASETSYTKLVRLIIIDEIHLLHDERGPVIESIVSRTIRQV 692
Score = 226 (84.6 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 57/188 (30%), Positives = 102/188 (54%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P TP M+ ++ + DE+ Q + ++ N+IQ++ F+T++ +++N+ + APTG+
Sbjct: 1354 PHTPLLDMQRAP--VKALKRDEY-QRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPTGS 1410
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL--NMIV 526
GKT A ++IL +H + +D + VYVAP + L + RLS L +
Sbjct: 1411 GKTVCAELAIL----RH----WAKEDSGRAVYVAPFQELIDSRLEDWKKRLSGLAGGKSI 1462
Query: 527 RELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGP 586
+LTG+M L + +++ TP +WDV++R+ V+L + DE+H+L G
Sbjct: 1463 AKLTGEMTADLKILAGSDLVLATPTQWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGY 1522
Query: 587 VIEALVAR 594
V E +V+R
Sbjct: 1523 VYEVVVSR 1530
Score = 39 (18.8 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 220 ADGRNFNLSWLRDACDRIVRQSI--SQLSRDDLAMAICRVLDSDKPGEEIAGDLLDL 274
AD RN S + +A R + I +SRD+ DS +P + I DL+D+
Sbjct: 386 ADARNLVESEMVEAGHRGILDEIRGKTVSRDN---------DSGRPEKRIKMDLMDV 433
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 564 (203.6 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 109/210 (51%), Positives = 155/210 (73%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP + R K ++EV +P + + EKL++I +L E+AQ AF G + LNR+QS+++
Sbjct: 456 LPDRSFRIRGKEFDEVHVPWV-SKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVY 514
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDG-YLHKDEFKIVYVAPMKALAA 509
T + +NIL+CAPTGAGKTN+A+++ILH++G + G + +KIVYVAPMKAL A
Sbjct: 515 GTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVA 574
Query: 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLV 569
EV + S RL + V+EL+GD L+ E++ETQ+IVTTPEKWD+ITRKS D + + LV
Sbjct: 575 EVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLV 634
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+LLIIDE+HLL+D+RGPV+E++VARTLRQ+
Sbjct: 635 RLLIIDEIHLLDDNRGPVLESIVARTLRQI 664
Score = 279 (103.3 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 63/188 (33%), Positives = 106/188 (56%)
Query: 409 PPTPTAQMKPGEKLIEIKEL-DEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTG 467
PPT ++P + + L + + + +K N +Q+++F +Y T++N++V APTG
Sbjct: 1322 PPTELLDLQP----LPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTG 1377
Query: 468 AGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIV 526
+GKT A +IL H +G ++VY+AP++A+A E R + + L + V
Sbjct: 1378 SGKTICAEFAILRN---HL-EG--PDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRV 1431
Query: 527 RELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGP 586
ELTG+ L LE+ Q+I++TPEKWD ++R+ V L I+DE+HL+ G
Sbjct: 1432 VELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQ 1491
Query: 587 VIEALVAR 594
V+E +V+R
Sbjct: 1492 VLEVIVSR 1499
Score = 47 (21.6 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 17 DIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYRWEEASTEVRQV-YKQFIG-AVV 74
DID +LQRK I Q ++ + + +E KI+ + E++ + + QF ++V
Sbjct: 273 DIDAYWLQRK-ISQEYEQKIDAQECQELAEELLKILAEGNDRDVEIKLLEHLQFEKFSLV 331
Query: 75 EFI 77
+F+
Sbjct: 332 KFL 334
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 530 (191.6 bits), Expect = 5.8e-52, Sum P(2) = 5.8e-52
Identities = 109/232 (46%), Positives = 160/232 (68%)
Query: 371 RKNPLDGLIGSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDE 430
+K LD ++ S A LP+GT+ + K Y+ + +P P + ++L+ I L +
Sbjct: 302 QKISLDRIVFSTSVENARVTLPEGTIHEVKKSYDTITVP-APAQSLSDNDELLPISTLPD 360
Query: 431 FAQAAFHGYKS--LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD 488
+AQ AF ++ NRIQS+I+ + T+ N+L+CAPTGAGKTN+AM++IL I ++FR+
Sbjct: 361 WAQEAFPKTETTTFNRIQSKIYNQAFETDNNLLICAPTGAGKTNVAMLTILRTI-ENFRN 419
Query: 489 -GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL-NMIVRELTGDMQLSRNELEETQMI 546
G++ FKIVY+AP+KAL E R F RL+ + ++V ELTGD LS+ ++ ETQ+I
Sbjct: 420 NGHIQLKNFKIVYIAPLKALVQEQMREFQRRLTSVYGVVVNELTGDSSLSKQQIAETQII 479
Query: 547 VTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQ 598
VTTPEKWD+ITRK D S LVKL+IIDE+HLL+D+RGPV+E+LV+R +R+
Sbjct: 480 VTTPEKWDIITRK--DPSYVKLVKLMIIDEIHLLHDERGPVLESLVSRAIRK 529
Score = 154 (59.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 35/145 (24%), Positives = 78/145 (53%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+ N++QS F TVY + N+ + + G GKT +A ++IL+ H+ + + +I
Sbjct: 1204 FTHFNKLQSSTFDTVYNSENNVFIGSSKGDGKTVLAELAILN----HWNN-----KKGRI 1254
Query: 499 VYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITR 558
VY+ P + L ++ + +S+ S + L+G+++ + ++ +I+ TPE+++ +++
Sbjct: 1255 VYINPCQELVDKLFKKWSTFFSSYEKEINVLSGNLREDSASVNQSHLILATPEQFNCLSK 1314
Query: 559 KSSDMSLSMLVKLLIIDEVHLLNDD 583
+ + L I D++HL+ D
Sbjct: 1315 RWKTRKAFRSIDLFIWDDLHLVGSD 1339
Score = 56 (24.8 bits), Expect = 5.8e-52, Sum P(2) = 5.8e-52
Identities = 21/107 (19%), Positives = 53/107 (49%)
Query: 64 QVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQTLI 123
Q+Y+ F+ + ++ P E+ SA + A E+ ++ + ++ EK+ +++ L+
Sbjct: 61 QLYELFVTKIRSYL----PDSSH-EVIQSASEV----ASEQLSNRDISVPEKRKELEELL 111
Query: 124 GHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSE--SLGNGSSDDFE 168
++SD ++++ +L+ + + + E ++ SSDD E
Sbjct: 112 NASISDDDLHELINLSNSIESAKQNHQQGNGDDEFVAIDFNSSDDEE 158
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 491 (177.9 bits), Expect = 3.9e-50, Sum P(2) = 3.9e-50
Identities = 102/216 (47%), Positives = 152/216 (70%)
Query: 386 MAVT--ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYK--S 441
M VT +LP+G+ ++ Y+E+ IP P+ + E L EI L ++ Q AF + S
Sbjct: 441 MTVTKVSLPEGSFKRVKPQYDEIHIP-APSKPVIDYE-LKEITSLPDWCQEAFPSSETTS 498
Query: 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHF--RDGYLHKDEFKIV 499
LN IQS++F + + N+L+CAPTG+GKTNIA++++L + H+ + L+ FKIV
Sbjct: 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558
Query: 500 YVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRK 559
Y+AP+KAL E R F RL+ L + V ELTGD +LSR +++ETQ++V+TPEKWD+ TR
Sbjct: 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRN 618
Query: 560 SSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
S+++++ LV+LLIIDE+HLL+DDRGPV+E++VART
Sbjct: 619 SNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVART 654
Score = 173 (66.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 50/193 (25%), Positives = 105/193 (54%)
Query: 409 PPTPTAQMKPGEKLIEIKEL--DEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPT 466
PPTP + I EL D+F++ F +K+ N+IQS++F+++Y +N+++ V +
Sbjct: 1319 PPTPLLE----NISISTSELGNDDFSEV-FE-FKTFNKIQSQVFESLYNSNDSVFVGSGK 1372
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL--NM 524
G GKT +A +++L+ H+R +++ + VY+ P + ++ R S L
Sbjct: 1373 GTGKTAMAELALLN----HWR-----QNKGRAVYINPSGEKIDFLLSDWNKRFSHLAGGK 1423
Query: 525 IVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD- 583
I+ +L D L+ L ++ +++ TP ++++++R+ ++L+I D+ H ++
Sbjct: 1424 IINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGV 1483
Query: 584 RGPVIEALVARTL 596
G V E L++R +
Sbjct: 1484 YGAVYETLISRMI 1496
Score = 79 (32.9 bits), Expect = 3.9e-50, Sum P(2) = 3.9e-50
Identities = 30/163 (18%), Positives = 70/163 (42%)
Query: 8 LTNSLREPFDIDQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYRWEEASTEVRQVYK 67
L N++ + + +++ +L+K + L+ S R Y + ++ E Y+
Sbjct: 65 LCNNINKGLKENDVAVEKTGKSASLKKIQQHNTILNSSSDFRLHYYPKDPSNVET---YE 121
Query: 68 QFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQTLIGHAV 127
Q + V E + ++P + + + +F R +E + + + NI E+K K+Q +G +
Sbjct: 122 QILQWVTEVLGNDIPHD----LIIGTADIFIRQLKENEENEDGNIEERKEKIQHELGINI 177
Query: 128 SDASVYKVASLAQRLSKLQ--PSEHNVTLFSESLGNGSSDDFE 168
++ L + ++ + P N + + SD+ E
Sbjct: 178 DSLKFNELVKLMKNITDYETHPDNSNKQAVAILADDEKSDEEE 220
Score = 64 (27.6 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 62/295 (21%), Positives = 125/295 (42%)
Query: 43 DESETARKI--VYRWEEASTEVRQVYKQFIGAVVE-FIDGEM--PSEEFGEIALSAY--- 94
+ + A+KI +YR++E S +V +V K+F+ D E+ P G I+
Sbjct: 5 ETKDKAKKIREIYRYDEMSNKVLKVDKRFMNTSQNPQRDAEISQPKSMSGRISAKDMGQG 64
Query: 95 --HLFGRPAEEEDNSVNRNIVEKKSKMQTLIGH--AVSDASVYKVASLAQRLSKLQPSEH 150
+ + +E D +V + K + ++ + H ++ +S +++ + S ++ E
Sbjct: 65 LCNNINKGLKENDVAVEKT--GKSASLKKIQQHNTILNSSSDFRLHYYPKDPSNVETYEQ 122
Query: 151 NVTLFSESLGNGSSDDFEFGSDLVFQAPARFLVDGSF-EDGALMGDESIAPSSFHDGWYD 209
+ +E LGN D G+ +F R L + EDG + E H+ +
Sbjct: 123 ILQWVTEVLGNDIPHDLIIGTADIF---IRQLKENEENEDGNI---EERKEKIQHELGIN 176
Query: 210 GSDSMDYNSAADGRNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAG 269
DS+ +N N++ D +Q+++ L+ D+ + V + + G
Sbjct: 177 -IDSLKFNELVKLMK-NITDYETHPDNSNKQAVAILADDEKSDEE-EVTEMSNNANVLGG 233
Query: 270 DLLDLVGDSAFETVQDL-ISHRKQLVDA---IRHGMLLLKSEKTASNSQSRMPSY 320
++ D D D+ ++ +K+ A I + ++ L KT SN +S +P Y
Sbjct: 234 EINDNEDDDEEYDYNDVEVNSKKKNKRALPNIENDIIKLSDSKT-SNIES-VPIY 286
>UNIPROTKB|I3L8F4 [details] [associations]
symbol:I3L8F4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000025178 OMA:CCILEIY Uniprot:I3L8F4
Length = 115
Score = 392 (143.0 bits), Expect = 3.8e-36, P = 3.8e-36
Identities = 73/106 (68%), Positives = 91/106 (85%)
Query: 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIV 499
+ LNRIQS +F+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIV
Sbjct: 2 RRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIV 61
Query: 500 YVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQM 545
YVAPMKALAAE+T FS RL PL ++V+ELTGDMQLS+NE+ TQ+
Sbjct: 62 YVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQV 107
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 414 (150.8 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 88/189 (46%), Positives = 129/189 (68%)
Query: 418 PGE-KLIEIKELDEFAQAAFH--GYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNI 473
P E KLI I EL E+ F LN IQS+++ + EN+L+CAPTG+GKTNI
Sbjct: 688 PEEIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNI 747
Query: 474 AMISILHEIGQH-FRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGD 532
A++ IL+ I + G +++ +FKIVY++PMKAL E ++F+ RL +N+ V ELTGD
Sbjct: 748 ALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTGD 807
Query: 533 MQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592
+ LS EL+++Q+IV TPEK+DVI+RK ++ L +KL+I DE+HLLN+ RG V+E+++
Sbjct: 808 VNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEMRGNVLESII 867
Query: 593 ARTLRQVYN 601
AR R + N
Sbjct: 868 ARINRYMDN 876
Score = 39 (18.8 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 78 DGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQTLIGHAVS 128
D E +E+GE + G +N+ N ++ KK K I H S
Sbjct: 283 DDEEGDDEYGE------NEDGDDNNNNNNNNNNSVRRKKKKKGNQINHLKS 327
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 414 (150.8 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 88/189 (46%), Positives = 129/189 (68%)
Query: 418 PGE-KLIEIKELDEFAQAAFH--GYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNI 473
P E KLI I EL E+ F LN IQS+++ + EN+L+CAPTG+GKTNI
Sbjct: 688 PEEIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNI 747
Query: 474 AMISILHEIGQH-FRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGD 532
A++ IL+ I + G +++ +FKIVY++PMKAL E ++F+ RL +N+ V ELTGD
Sbjct: 748 ALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTGD 807
Query: 533 MQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592
+ LS EL+++Q+IV TPEK+DVI+RK ++ L +KL+I DE+HLLN+ RG V+E+++
Sbjct: 808 VNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEMRGNVLESII 867
Query: 593 ARTLRQVYN 601
AR R + N
Sbjct: 868 ARINRYMDN 876
Score = 39 (18.8 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 78 DGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQTLIGHAVS 128
D E +E+GE + G +N+ N ++ KK K I H S
Sbjct: 283 DDEEGDDEYGE------NEDGDDNNNNNNNNNNSVRRKKKKKGNQINHLKS 327
>UNIPROTKB|H9L1I6 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035544 Uniprot:H9L1I6
Length = 571
Score = 369 (135.0 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 112/423 (26%), Positives = 200/423 (47%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLGNG---SS 164
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G S
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 165 DDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGR 223
D+ E D+ + V D + GDE++ + + M R
Sbjct: 208 DEEEGDEDIYGE------VRDEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPR 261
Query: 224 NFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETV 283
+ + WL+ R +I + D + I + D+ E L+ L+G + F+ +
Sbjct: 262 DIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFI 318
Query: 284 QDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXX 343
+ L HR ++ ++EK + ++ Q E + + L
Sbjct: 319 KVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERS 377
Query: 344 XXXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVR 397
+ + D+ + EA + LD L+ + QGS MA LP G+ R
Sbjct: 378 RRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFA-QGSHFMANKRCQLPDGSFR 436
Query: 398 KHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTN 457
+ KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ ++
Sbjct: 437 RQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESD 496
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
EN+L+CAPTGAGKTN+A++ +L EIG+H DG ++ DEFKI+Y+APM++L E+ +F
Sbjct: 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAPMRSLVQEMVGSFG 556
Query: 517 SRL 519
RL
Sbjct: 557 KRL 559
>UNIPROTKB|C9JAQ9 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR004179 Pfam:PF02889
HOGENOM:HOG000157749 GO:GO:0008026 EMBL:AC021188 HGNC:HGNC:30859
ChiTaRS:SNRNP200 IPI:IPI01018841 ProteinModelPortal:C9JAQ9
SMR:C9JAQ9 STRING:C9JAQ9 Ensembl:ENST00000349783
ArrayExpress:C9JAQ9 Bgee:C9JAQ9 Uniprot:C9JAQ9
Length = 625
Score = 368 (134.6 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 113/429 (26%), Positives = 206/429 (48%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLG-NGSSD- 165
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G N +
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 166 DFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGRN 224
D E G + V+ + S +D + GDE++ + + M R+
Sbjct: 208 DEEEGDEDVY---GEVREEASDDD--MEGDEAVVRCTLSANLVASGELMSSKKKDLHPRD 262
Query: 225 FNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQ 284
+ WL+ R +I + D + I + D+ E L+ L+G + F+ ++
Sbjct: 263 IDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFIK 319
Query: 285 DLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXX 344
L HR ++ ++EK + ++ Q E + + L
Sbjct: 320 VLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERSR 378
Query: 345 XXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVRK 398
+ + D+ + EA + LD L+ + QGS MA LP G+ R+
Sbjct: 379 RERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT-QGSHFMANKRCQLPDGSFRR 437
Query: 399 HLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNE 458
KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ T+E
Sbjct: 438 QRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDE 497
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+CAPTGAGKTN+A++ +L EIG+H DG ++ D+FKI+Y+APM++L E+ +F
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 518 RLSPLNMIV 526
R + N ++
Sbjct: 558 RDAKSNSLI 566
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 273 (101.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 65/161 (40%), Positives = 95/161 (59%)
Query: 436 FHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDE 495
F +K N IQ+++F ++T+ENIL+ APTG+GKT I + IL + L +
Sbjct: 1365 FFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNL--------LRCEG 1416
Query: 496 FKIVYVAPMKALAAEVTRTFSSRLSPL-NMIVRELTGDMQLSRNELEETQMIVTTPEKWD 554
K VY+ PMKA+ E +++ S+ L N V ELTGD ++ + E+ +I+ TPEK D
Sbjct: 1417 QKSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLD 1476
Query: 555 VITRKSSDMSLSMLVKLLIIDEVHLLN-DDRGPVIEALVAR 594
VITR + + L+I DE+HLL ++RG VIE LV R
Sbjct: 1477 VITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEILVNR 1517
Score = 267 (99.0 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 57/115 (49%), Positives = 75/115 (65%)
Query: 489 GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVT 548
GY++ EFKI+Y+APMK+L E+T F +L N+ V E T + LS ELE+ +IVT
Sbjct: 498 GYINSKEFKIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVT 557
Query: 549 TPEKWDVITRKSS------DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLR 597
PEK D++ R SS D SL +K LI+DEVHLLN DRG VIE +V+R L+
Sbjct: 558 VPEKLDILLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQ 612
Score = 145 (56.1 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 379 IGSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHG 438
I + Q + +P+ T+ + +V I Q E L+ + L + + F
Sbjct: 279 IPNDQDKLEEIHVPKNTIYSYTDNITKVKISRLENLQFHKKE-LVSVNVLPFWHKYIFD- 336
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482
++ N +QS++F + + +N+N+LVCAPTG GKTNIA++ IL +I
Sbjct: 337 FEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVILQQI 380
Score = 53 (23.7 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 265 EEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR--HGMLLLKSEKTASN 312
E + L+DL+GD + + +I +++Q+ I+ +++K SN
Sbjct: 183 ENLENSLVDLLGDRFLDFIIQIIKNKEQIEKDIKLLSKQIVIKENTLVSN 232
Score = 37 (18.1 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 19 DQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYRWEEASTEVR 63
D +Y Q K I P N + L+E + +Y + + T+V+
Sbjct: 268 DDSYNQMKKIYI----P-NDQDKLEEIHVPKNTIYSYTDNITKVK 307
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 273 (101.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 65/161 (40%), Positives = 95/161 (59%)
Query: 436 FHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDE 495
F +K N IQ+++F ++T+ENIL+ APTG+GKT I + IL + L +
Sbjct: 1365 FFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNL--------LRCEG 1416
Query: 496 FKIVYVAPMKALAAEVTRTFSSRLSPL-NMIVRELTGDMQLSRNELEETQMIVTTPEKWD 554
K VY+ PMKA+ E +++ S+ L N V ELTGD ++ + E+ +I+ TPEK D
Sbjct: 1417 QKSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLD 1476
Query: 555 VITRKSSDMSLSMLVKLLIIDEVHLLN-DDRGPVIEALVAR 594
VITR + + L+I DE+HLL ++RG VIE LV R
Sbjct: 1477 VITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEILVNR 1517
Score = 267 (99.0 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 57/115 (49%), Positives = 75/115 (65%)
Query: 489 GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVT 548
GY++ EFKI+Y+APMK+L E+T F +L N+ V E T + LS ELE+ +IVT
Sbjct: 498 GYINSKEFKIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVT 557
Query: 549 TPEKWDVITRKSS------DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLR 597
PEK D++ R SS D SL +K LI+DEVHLLN DRG VIE +V+R L+
Sbjct: 558 VPEKLDILLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQ 612
Score = 145 (56.1 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 379 IGSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHG 438
I + Q + +P+ T+ + +V I Q E L+ + L + + F
Sbjct: 279 IPNDQDKLEEIHVPKNTIYSYTDNITKVKISRLENLQFHKKE-LVSVNVLPFWHKYIFD- 336
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482
++ N +QS++F + + +N+N+LVCAPTG GKTNIA++ IL +I
Sbjct: 337 FEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVILQQI 380
Score = 53 (23.7 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 265 EEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR--HGMLLLKSEKTASN 312
E + L+DL+GD + + +I +++Q+ I+ +++K SN
Sbjct: 183 ENLENSLVDLLGDRFLDFIIQIIKNKEQIEKDIKLLSKQIVIKENTLVSN 232
Score = 37 (18.1 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 19 DQAYLQRKSILQNLQKPRNTTNSLDESETARKIVYRWEEASTEVR 63
D +Y Q K I P N + L+E + +Y + + T+V+
Sbjct: 268 DDSYNQMKKIYI----P-NDQDKLEEIHVPKNTIYSYTDNITKVK 307
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 313 (115.2 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 72/165 (43%), Positives = 100/165 (60%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
++ N +QS+ F +VY TN+N++V APTG+GKT I ++I + Q+ D FK+
Sbjct: 251 FELFNAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQN-TD-----QNFKV 304
Query: 499 VYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGD-MQLSRNELEETQMIVTTPEKWDVIT 557
+YVAP KAL +E R + S+ LN+ ELTGD + + Q+IVTTPEK D IT
Sbjct: 305 IYVAPTKALCSERARDWESKFRHLNLTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSIT 364
Query: 558 RKSSDM-SLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVYN 601
R+ D L LV+L++IDEVH L D RG +E L+ R QV N
Sbjct: 365 RRWEDYRKLLDLVQLVLIDEVHFLKDTRGATLEVLICRMKTQVSN 409
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 310 (114.2 bits), Expect = 5.4e-24, P = 5.4e-24
Identities = 69/180 (38%), Positives = 108/180 (60%)
Query: 420 EKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKT---NIAMI 476
+ L + E+ ++ F + N IQS+ F + YT+ N++VCAPTG+GKT +A+
Sbjct: 261 DSLKAVTEIPAKFRSVFKEFPYFNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELAIT 320
Query: 477 SILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536
+L E+ L KIVY+AP+KAL ++ + + P+ + +ELTGD +
Sbjct: 321 RLLMEVP-------LPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMD 373
Query: 537 RN-ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
E++ +I+TTPEKWD +TRK D SL LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 374 DLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 305 (112.4 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 66/177 (37%), Positives = 106/177 (59%)
Query: 420 EKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL 479
+ L + E+ ++ F + N IQS+ F + YT+ N ++CAPTG+GKT + ++I
Sbjct: 261 DSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAIT 320
Query: 480 HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN- 538
+ + L KIVY+AP+KAL ++ + + P+ + +ELTGD +
Sbjct: 321 RLL----MEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLF 376
Query: 539 ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
E++ +I+TTPEKWD +TRK D SL LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 305 (112.4 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 66/177 (37%), Positives = 106/177 (59%)
Query: 420 EKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL 479
+ L + E+ ++ F + N IQS+ F + YT+ N ++CAPTG+GKT + ++I
Sbjct: 261 DSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAIT 320
Query: 480 HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN- 538
+ + L KIVY+AP+KAL ++ + + P+ + +ELTGD +
Sbjct: 321 RLL----MEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLF 376
Query: 539 ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
E++ +I+TTPEKWD +TRK D SL LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 303 (111.7 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 66/177 (37%), Positives = 106/177 (59%)
Query: 420 EKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL 479
+ L + E+ ++ F + N IQS+ F + YT+ N ++CAPTG+GKT + ++I
Sbjct: 261 DSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAIT 320
Query: 480 HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN- 538
+ + L KIVY+AP+KAL ++ + + P+ + +ELTGD +
Sbjct: 321 RLL----MEVPLPWSNIKIVYMAPIKALCSQRFDDWKKKFGPIGLNCKELTGDTVMDDLF 376
Query: 539 ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
E++ +I+TTPEKWD +TRK D SL LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 299 (110.3 bits), Expect = 4.6e-23, P = 4.6e-23
Identities = 62/164 (37%), Positives = 100/164 (60%)
Query: 433 QAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLH 492
++ F + N IQS+ F + YT+ N ++CAPTG+GKT + ++I + + L
Sbjct: 3 RSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLL----MEAPLP 58
Query: 493 KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-ELEETQMIVTTPE 551
K+VY+AP+KAL ++ + + P+ + +ELTGD + E++ +I+TTPE
Sbjct: 59 WLNMKVVYMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQHANIIMTTPE 118
Query: 552 KWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
KWD +TRK D S LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 119 KWDSMTRKWRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSR 162
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 301 (111.0 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 65/172 (37%), Positives = 105/172 (61%)
Query: 425 IKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQ 484
+ E+ ++ F + N IQS+ F + YT+ N ++CAPTG+GKT + ++I +
Sbjct: 264 VTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLL-M 322
Query: 485 HFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-ELEET 543
+L+ KIVY+AP+KAL ++ + + P+ + +ELTGD + E++
Sbjct: 323 EVPLPWLN---IKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHA 379
Query: 544 QMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
+I+TTPEKWD +TRK D SL LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 380 HIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSR 431
>UNIPROTKB|H9KZ72 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000005505 Uniprot:H9KZ72
Length = 613
Score = 292 (107.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 98/397 (24%), Positives = 181/397 (45%)
Query: 114 EKKSKMQTLIGHAVSDASVYKVASLAQRLS------KLQPSEHNVTLFSESLGNG---SS 164
E++ ++ L+G D + + +L ++++ ++Q + N+ E+ G S
Sbjct: 152 ERRKEIDLLLGQT-DDTRYHVLVNLGKKITDYGGDKEIQNMDDNI---DETYGVNVQFES 207
Query: 165 DDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGWYDGSDSMDYNSA-ADGR 223
D+ E D+ + V D + GDE++ + + M R
Sbjct: 208 DEEEGDEDIYGE------VRDEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPR 261
Query: 224 NFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETV 283
+ + WL+ R +I + D + I + D+ E L+ L+G + F+ +
Sbjct: 262 DIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDFI 318
Query: 284 QDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXX 343
+ L HR ++ ++EK + ++ Q E + + L
Sbjct: 319 KVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLH-ETEKEDLIREERS 377
Query: 344 XXXXGTEYAAENDVSSTSFSSLIEASERKNPLD--GLIGSGQGS--MAVTA--LPQGTVR 397
+ + D+ + EA + LD L+ + QGS MA LP G+ R
Sbjct: 378 RRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFA-QGSHFMANKRCQLPDGSFR 436
Query: 398 KHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTN 457
+ KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++ ++
Sbjct: 437 RQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESD 496
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHK 493
EN+L+CAPTGAGKTN+A++ +L EIG+H DG +++
Sbjct: 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINR 533
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 304 (112.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 70/186 (37%), Positives = 112/186 (60%)
Query: 412 PTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKT 471
PT+ G L+ ++EL + + F+ + N +QS+ F +Y +++N+++ APTG+GKT
Sbjct: 223 PTSDR--GIALLSVRELPDNYRPLFN-FPVFNAVQSKCFHAIYKSDDNVVIAAPTGSGKT 279
Query: 472 NIAMISILHEIGQHFRDGYLHKDE-FKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELT 530
+ ++I + + KD+ FK+VY AP K+L +E R ++ + L + ELT
Sbjct: 280 VVMELAICRLLN-------IRKDKKFKVVYQAPTKSLCSERFRDWNQKFHALGLQCAELT 332
Query: 531 GDMQLSR-NELEETQMIVTTPEKWDVITRKSSD-MSLSMLVKLLIIDEVHLLNDDRGPVI 588
GD S+ ++ Q+IVTTPEKWD +TRK D + L VKL +IDEVH L + RG +
Sbjct: 333 GDTDHSQLGNVQNRQIIVTTPEKWDSMTRKWKDHIRLMQPVKLFLIDEVHTLKEARGATL 392
Query: 589 EALVAR 594
EA+V+R
Sbjct: 393 EAVVSR 398
Score = 39 (18.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 304 LKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLXXXXXXXXXXGTEYAAENDVSSTSFS 363
+ +EK SQ +P + + + Q E ++ L + E D+ ++F
Sbjct: 39 MMNEKLIQESQ--VPPFFSTICGQPEEKKSYQLLSSAQMSVSPTPRKDDFEEDIEPSAFD 96
Query: 364 SLIEASERKN 373
+ A +N
Sbjct: 97 LEVLAQSDRN 106
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 274 (101.5 bits), Expect = 3.6e-20, P = 3.6e-20
Identities = 66/193 (34%), Positives = 111/193 (57%)
Query: 404 EEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVC 463
EE P T + K +K + L + + F + N++QS F ++Y +NEN ++
Sbjct: 103 EEAKKPKKVTIR-KSAKKCLSTTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIIS 160
Query: 464 APTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLN 523
+PTG+GKT + ++IL I + D + KI+Y+AP K+L E+ + + S +N
Sbjct: 161 SPTGSGKTVLFELAILRLIKETNSD----TNNTKIIYIAPTKSLCYEMYKNWFP--SFVN 214
Query: 524 MIVRELTGDMQ-LSRNELEETQMIVTTPEKWDVITRKSSDMS-LSMLVKLLIIDEVHLLN 581
+ V LT D L + ++ +I+TTPEKWD++TR+ SD S L LVKL+++DE+H +
Sbjct: 215 LSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIK 274
Query: 582 DDRGPVIEALVAR 594
+ RG +E ++ R
Sbjct: 275 EKRGASLEVILTR 287
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 255 (94.8 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 62/189 (32%), Positives = 101/189 (53%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKS--LNRIQSRIFQTVYYTNENILVCAPT 466
PPT ++P + + L A + + K N IQ+++F TVY +++N+ V APT
Sbjct: 131 PPTELLDLQP----LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 186
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMI 525
G+GKT A +IL + L E + VY+ PM+ALA +V + + LN
Sbjct: 187 GSGKTICAEFAILRML--------LQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 238
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V LTG+ L + +I++TPEKWD+++R+ + L ++DEVHL+ + G
Sbjct: 239 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 298
Query: 586 PVIEALVAR 594
PV+E + +R
Sbjct: 299 PVLEVICSR 307
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 269 (99.8 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 62/180 (34%), Positives = 106/180 (58%)
Query: 422 LIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHE 481
L + +L ++AF ++ N +QS F ++++ N+++ APTG+GKT + + IL
Sbjct: 6 LKSVSDLPGNFRSAF-SFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRL 64
Query: 482 IGQHF-RDG-YLH-KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL-SR 537
+ ++G +LH K K VY++P KAL E R ++ + + + ELTGD + S
Sbjct: 65 FSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYST 124
Query: 538 NELEETQMIVTTPEKWDVITR---KSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
+++ +I+TTPEK+D ++R S + + L++IDEVHLLND RG +EA+V+R
Sbjct: 125 KNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSR 184
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 266 (98.7 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 56/167 (33%), Positives = 98/167 (58%)
Query: 433 QAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKT---NIAMISILHEIGQHFRDG 489
++ F + N +QS+ V Y+N+N + CAPTG+GKT +A++ +L E + + +
Sbjct: 3 RSVFKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHN- 61
Query: 490 YLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-ELEETQMIVT 548
+ VY+AP+KAL ++ + + PL + +ELTGD ++ E+++ +I T
Sbjct: 62 ------VRAVYMAPIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFT 115
Query: 549 TPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
T EKWD +TR+ D L ++L ++DEVH++ D RG +E +V+R
Sbjct: 116 TAEKWDSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSR 162
>UNIPROTKB|D4A4G4 [details] [associations]
symbol:Hfm1 "Protein Hfm1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 IPI:IPI00388911 Ensembl:ENSRNOT00000033855
Uniprot:D4A4G4
Length = 410
Score = 246 (91.7 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
Identities = 53/152 (34%), Positives = 87/152 (57%)
Query: 425 IKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQ 484
+ E+ ++ F + N IQS+ F + YT+ N ++CAPTG+GKT + ++I +
Sbjct: 263 VTEIPAKFRSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLL-- 320
Query: 485 HFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-ELEET 543
+ L K+VY+AP+KAL ++ + + P+ + +ELTGD + E++
Sbjct: 321 --MEAPLPWLNMKVVYMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQHA 378
Query: 544 QMIVTTPEKWDVITRKSSDMSLSMLVKLLIID 575
+I+TTPEKWD +TRK D S LV+L +ID
Sbjct: 379 NIIMTTPEKWDSMTRKWRDNSFIQLVRLFLID 410
Score = 37 (18.1 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 40 NSLDESETARKIVY 53
N+ D S TA K+VY
Sbjct: 108 NNNDMSHTAGKLVY 121
>UNIPROTKB|F1RYR3 [details] [associations]
symbol:LOC100517018 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00700000104562
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
EMBL:CU104757 Ensembl:ENSSSCT00000004816 Uniprot:F1RYR3
Length = 391
Score = 241 (89.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 56/150 (37%), Positives = 85/150 (56%)
Query: 432 AQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL 491
A A + + N +Q++IF T+Y+T+ N+L+ APTG+GKT A ++I ++
Sbjct: 248 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY------ 301
Query: 492 HKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTTP 550
K VY+AP+KAL E + R+ L V ELTGD+ + + +IVTTP
Sbjct: 302 --PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTP 359
Query: 551 EKWDVITRKSSDMSLSMLVKLLIIDEVHLL 580
EKWD ++R + + V +LIIDE+HLL
Sbjct: 360 EKWDGVSRSWQNRNYVKQVTILIIDEIHLL 389
>UNIPROTKB|I3LVA7 [details] [associations]
symbol:I3LVA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000024341 Uniprot:I3LVA7
Length = 119
Score = 221 (82.9 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 42/56 (75%), Positives = 53/56 (94%)
Query: 545 MIVTTPEKWDVITRKS-SDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
M+VTTPEKWDV+TRKS D++LS +VKLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 1 MLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 56
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 224 (83.9 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 45/100 (45%), Positives = 68/100 (68%)
Query: 497 KIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-ELEETQMIVTTPEKWDV 555
KIVY+AP+KAL ++ + + P+ + +ELTGD + E++ +I+TTPEKWD
Sbjct: 11 KIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDS 70
Query: 556 ITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
+TRK D SL LV+L +IDEVH++ D+ RGP +E +V+R
Sbjct: 71 MTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSR 110
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 174 (66.3 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V ELTGD+ + + +IVTTPEKWD ++R + + V +LIIDE+HLL ++RG
Sbjct: 16 VIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERG 75
Query: 586 PVIEALVART 595
PV+E +V+RT
Sbjct: 76 PVLEVIVSRT 85
>UNIPROTKB|H9L353 [details] [associations]
symbol:H9L353 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:AADN02064072
Ensembl:ENSGALT00000036127 OMA:CTERLTE Uniprot:H9L353
Length = 98
Score = 153 (58.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 491 LHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNELEETQMIVTT 549
L E + VY+ PM+ALA +V + + LN V LTG+ L + +I++T
Sbjct: 3 LQNSEGRCVYITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIIST 62
Query: 550 PEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
PEKWD+++R+ V L I+DEVHL+ + G
Sbjct: 63 PEKWDILSRRWKQRKNVQNVNLFIVDEVHLIGGENG 98
>TIGR_CMR|SPO_3098 [details] [associations]
symbol:SPO_3098 "ATP-dependent helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR013701
InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03724 RefSeq:YP_168301.1 ProteinModelPortal:Q5LNV5
GeneID:3195597 KEGG:sil:SPO3098 PATRIC:23379641
HOGENOM:HOG000036041 OMA:SYEDAPR ProtClustDB:CLSK2308438
InterPro:IPR026362 TIGRFAMs:TIGR04121 Uniprot:Q5LNV5
Length = 802
Score = 154 (59.3 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 42/140 (30%), Positives = 72/140 (51%)
Query: 461 LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520
L+ APTG GKT + L E+ + G LH +YV+P+KALAA++ R + +
Sbjct: 36 LLIAPTGGGKTMAGFLPTLAELAEGQHQG-LHT-----LYVSPLKALAADIKRNLRTPVD 89
Query: 521 PLNMIVR--ELTGDM---QLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIID 575
+ + VR + TGD Q R + +++TTPE ++T + ++ +++D
Sbjct: 90 EIGLAVRIEDRTGDTSATQKKRQRADPPHILLTTPESLALLTSYEDAPRMFAGLRRVVVD 149
Query: 576 EVHLLNDD-RGPVIEALVAR 594
E+H L + RG + +AR
Sbjct: 150 EIHALAESKRGDQLMLALAR 169
>ASPGD|ASPL0000001605 [details] [associations]
symbol:AN10757 species:162425 "Emericella nidulans"
[GO:0035861 "site of double-strand break" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000733 "DNA strand renaturation" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=IEA] [GO:0070914 "UV-damage excision repair" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:BN001301 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014939 SMART:SM01075 OMA:DELHVYK
InterPro:IPR018973 Pfam:PF09369 ProteinModelPortal:C8V3J7
EnsemblFungi:CADANIAT00007106 Uniprot:C8V3J7
Length = 1210
Score = 148 (57.2 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 45/175 (25%), Positives = 87/175 (49%)
Query: 435 AFHGYKSLNRIQSRIFQTVYYTNE--NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLH 492
A + K + R S + + + ++ N++V T +GK+ I + +LHE+ Q
Sbjct: 390 ALYNTKGITRFYSHQAEAINHLHDGKNVIVSTSTSSGKSLIYQVPMLHELEQD------- 442
Query: 493 KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMI----VRELTGDMQLSRNEL--EETQMI 546
+ + +Y+ P KALA + R+ L LN + V GD ++ L +E ++I
Sbjct: 443 -SDSRGMYIFPTKALAQDQKRSMQELLQYLNSLQGTMVETFDGDTPMANRNLIRDEARII 501
Query: 547 VTTPEKWDV--ITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
T P+ + + ++SS + +K +++DE+H+ N G + AL+ R LR++
Sbjct: 502 FTNPDMLHITILPQESSWRTFLQNLKFVVVDELHVYNGLFGSHV-ALIMRRLRRI 555
Score = 45 (20.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 113 VEKKSKMQTLIGHAVSDASVYKVASLAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFGSD 172
+E ++++ LI AV ++ + A RL L E V + ++ NG+ D+ +D
Sbjct: 171 IEDIARVRVLIPRAVR----FEYVNEA-RLDVLSAGEREVKGWGGAIDNGNGDEMNGEAD 225
Query: 173 LVFQAPARFLVDGSFEDGALMGDESIAPSSFHD 205
L+ F DG L ++ S D
Sbjct: 226 AKLDGVMYALLF-EFLDGDLKKEKKSLTSGTRD 257
>UNIPROTKB|Q4K580 [details] [associations]
symbol:lhr "Putative ATP-dependent helicase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR005471 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 Pfam:PF09339 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006139 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000076
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1201 HOGENOM:HOG000238716 KO:K03724 RefSeq:YP_262603.2
GeneID:3479923 KEGG:pfl:PFL_5535 PATRIC:19880561
ProtClustDB:CLSK838736 BioCyc:PFLU220664:GIX8-5572-MONOMER
Uniprot:Q4K580
Length = 1428
Score = 147 (56.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 46/166 (27%), Positives = 81/166 (48%)
Query: 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHE-IGQHFRDGYLHKDE 495
H + ++ Q+R + + + L+ APTG+GKT A ++++ + + Q G D
Sbjct: 24 HTFAAVTPAQARAWPLIAQ-RRSTLIAAPTGSGKTLTAFLAVIDDLVRQGLAGGGQLPDA 82
Query: 496 FKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL------------TGDM-QLSRNELEE 542
+VYV+P+KAL+ ++ L+ + +R + TGD Q RN + +
Sbjct: 83 TLVVYVSPLKALSNDIQINLQQPLAGITEQLRRMGLPELSISTAVRTGDTPQKDRNAMRK 142
Query: 543 T--QMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLL-NDDRG 585
+ Q++VTTPE V+ S + + +IIDE+H L RG
Sbjct: 143 SAPQILVTTPESLYVLLGSDSGRRMLASTRSVIIDEIHALAGSKRG 188
Score = 37 (18.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 573 IIDEVHLLNDDRGPVIEALV 592
++ E HLL + V++ LV
Sbjct: 1203 LLQEAHLLRSELETVLQELV 1222
>UNIPROTKB|E1C287 [details] [associations]
symbol:E1C287 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00550000074822 EMBL:AADN02012856
IPI:IPI00587427 Ensembl:ENSGALT00000009827 OMA:HAVKDES
Uniprot:E1C287
Length = 177
Score = 116 (45.9 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 551 EKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
EKWD +TR+ D S+ LV+L +IDEVH++ D+ RG +E +V+R
Sbjct: 2 EKWDSMTRRWKDNSIVQLVRLFLIDEVHVIKDESRGATLEVVVSR 46
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 124 (48.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 41/148 (27%), Positives = 75/148 (50%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
GYK + IQ ++ + E ++ APTG+GKT I IL + + ++G F+
Sbjct: 218 GYKEPSPIQMQVIPILLKERE-VVAIAPTGSGKTASFSIPILQALYEPKKEG------FR 270
Query: 498 IVYVAPMKALAAEVTRTFS--SRLSPLNM-IVRELTGDMQLSRNELEETQMIVTTPEKWD 554
V +AP + LA ++ R F S+ P + ++ + + + N ++ +++TTP +
Sbjct: 271 SVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRL- 329
Query: 555 VITRKSSDMSLSMLVKLLIIDEVHLLND 582
V K + +SL+ V+ L+ DE L D
Sbjct: 330 VYLIKENLLSLNK-VEYLVFDEADKLFD 356
Score = 49 (22.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 149 EHNVTLFSESLGNGSSDDFEFGSD 172
E ++TLF++S N +SDD + D
Sbjct: 125 EEDITLFNKSNENENSDDSDDSDD 148
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 127 (49.8 bits), Expect = 0.00035, P = 0.00035
Identities = 40/136 (29%), Positives = 69/136 (50%)
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
+++ V A T AGKT +A +I H++ K +Y +P+KAL+ + R F
Sbjct: 305 DSVFVAAHTSAGKTVVAEYAI----------AMAHRNMTKCIYTSPIKALSNQKFRDFKE 354
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
++ V +TGD+Q++ E ++ T E + + +D+ V+ +I DEV
Sbjct: 355 TFKDID--VGLITGDVQIN----PEANCLIMTTEILRSMLYRGADLIRD--VEFVIFDEV 406
Query: 578 HLLND-DRGPVIEALV 592
H +ND DRG V E ++
Sbjct: 407 HYVNDIDRGVVWEEVI 422
>UNIPROTKB|Q87XN5 [details] [associations]
symbol:PSPTO_4141 "Helicase domain protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR013701 InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271
Pfam:PF08494 PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1201 KO:K03724 HOGENOM:HOG000036041 InterPro:IPR026362
TIGRFAMs:TIGR04121 RefSeq:NP_793902.1 ProteinModelPortal:Q87XN5
GeneID:1185821 KEGG:pst:PSPTO_4141 PATRIC:19999779 OMA:FTNTRNQ
ProtClustDB:CLSK908616 BioCyc:PSYR223283:GJIX-4205-MONOMER
Uniprot:Q87XN5
Length = 836
Score = 122 (48.0 bits), Expect = 0.00074, P = 0.00074
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMI--VRELTGDMQLSRNELEETQM---IVTTPEK 552
++++ PM+ALAA+ R + L+ L++ V TGD S + ++ ++TTPE
Sbjct: 88 VLWITPMRALAADTARALEAPLAELDIAWSVGLRTGDTSGSERARQSRRLPSALITTPES 147
Query: 553 WDVI-TRKSSDMSLSMLVKLLIIDEVH-LLNDDRGPVIEALVAR 594
++ TR + ++LS L K++++DE H L+ + RG ++ +AR
Sbjct: 148 LTLLLTRADAQVALSTL-KMVVVDEWHELIGNKRGVQLQLALAR 190
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 119 (46.9 bits), Expect = 0.00079, P = 0.00079
Identities = 47/178 (26%), Positives = 84/178 (47%)
Query: 420 EKLIEIKELDEFAQAAFH-GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISI 478
E E+ + E QA + Y IQS+ +I+ A TG+GKT I I
Sbjct: 81 ESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPAL-EGHDIIGLAQTGSGKTAAFAIPI 139
Query: 479 LHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL--- 535
L+ + H ++ Y + + +AP + LA ++ TF S S + + + G M +
Sbjct: 140 LNRLW-HDQEPY-----YACI-LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQ 192
Query: 536 SRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV-HLLNDDRGPVIEALV 592
+R+ + + +I+ TP + + SL L K L++DE LL+ + GPV++ ++
Sbjct: 193 ARDLMRKPHIIIATPGRLMDHLENTKGFSLRKL-KFLVMDEADRLLDMEFGPVLDRIL 249
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 601 591 0.00084 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 613 (65 KB)
Total size of DFA: 293 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.81u 0.08s 53.89t Elapsed: 00:00:09
Total cpu time: 53.84u 0.08s 53.92t Elapsed: 00:00:09
Start: Tue May 21 11:01:21 2013 End: Tue May 21 11:01:30 2013