BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007492
(601 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 179/393 (45%), Positives = 247/393 (62%), Gaps = 43/393 (10%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G E ++ L+ +R +VD H +
Sbjct: 245 EDLCCTLYDMLASVKSGDELQDELFELLGPDGLELIEKLLQNRVTIVDRFLNSSNDHKLQ 304
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAENDVSSTSF 362
L+ ++ P+YG QVT+Q+E E+Q+ K R+EEKR R + A E+ ++
Sbjct: 305 ALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGL 364
Query: 363 -------------SSLIEASERKNPL----------------------DGLIGSGQGSMA 387
+L+ A R P+ + + S + A
Sbjct: 365 LCFDPKELRIHREQALMNA--RNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSAFIAGA 422
Query: 388 VTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQS 447
LP+G R++ K YEEV IP T + EK + I++LDE Q AF G + LNRIQS
Sbjct: 423 KMILPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQS 482
Query: 448 RIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507
+F+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIVYVAPMKAL
Sbjct: 483 IVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKAL 542
Query: 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLS 566
AAE+T FS RL PL ++V+ELTGDMQLS+NE+ TQM+VTTPEKWDV+TRKS D++LS
Sbjct: 543 AAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALS 602
Query: 567 MLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+VKLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 603 QIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Query: 432 AQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL 491
A A + + N +Q++IF T+Y+T+ N+L+ APTG+GKT A ++I ++
Sbjct: 1317 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY------ 1370
Query: 492 HKDEFKIVYVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGDMQLSRNELEETQMIVTTP 550
K VY+AP+KAL E + R+ L V ELTGD+ + + +IVTTP
Sbjct: 1371 --PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTP 1428
Query: 551 EKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
EKWD ++R + + V +LIIDE+HLL ++RGPV+E +V+RT
Sbjct: 1429 EKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 316 bits (809), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 199/501 (39%), Positives = 286/501 (57%), Gaps = 55/501 (10%)
Query: 148 SEHNVTLFSESLGNGSSDDFEFGSDLVFQAPARFLVDGSFEDGALMGDESIAPSSFHDGW 207
S+ ++T F + N +D FG +L F L F++ + G+ S + +
Sbjct: 142 SQDDLTAFVQMAENPCNDRVVFGKNLAFSFDMYDL--DHFDELPINGESQKTISLDYKKF 199
Query: 208 YDGSDSMDYN---SAADGRNFNLSWLRDACDRIVRQSISQLSR----DDLAMAICRVLDS 260
+ Y + N +L W ++ + ++ +++ +DL + +L S
Sbjct: 200 LNEQFQEPYTPELKPVEKTNGSLLWCE--VEKYLNATLKEMTEAARVEDLCCTLYDMLAS 257
Query: 261 DKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGMLLLKSEKTASNSQS 315
K G+E+ +L +L+G + ++ L+ +R +VD H +L+ ++
Sbjct: 258 AKSGDELQDELFELLGPEGLDLIEKLLQNRITIVDRFLNSSSDHKFQVLQDSCKKILGEN 317
Query: 316 RMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAEN-DVSSTSF------------ 362
P+YG QVT+Q+E E+Q+ K R+EEKR R + A E+ +VS
Sbjct: 318 SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377
Query: 363 -SSLIEASERKNPLDGL-------------IGSGQGSMAVTA---------LPQGTVRKH 399
+L+ A R P+ G + Q T+ LP+G R++
Sbjct: 378 EHALLNA--RNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQREN 435
Query: 400 LKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNEN 459
K YEEV IP + EK + IK+LDE Q AF G K LNRIQS +F+T Y TNEN
Sbjct: 436 TKLYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNEN 495
Query: 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519
+L+CAPTGAGKTNIAM++ILHEI QHF G + K+EFKIVYVAPMKALAAE+T FS RL
Sbjct: 496 MLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL 555
Query: 520 SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLVKLLIIDEVH 578
PL ++V+ELTGDMQLS++E+ TQM+VTTPEKWDV+TRKS D++LS +VKLLI+DEVH
Sbjct: 556 EPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVH 615
Query: 579 LLNDDRGPVIEALVARTLRQV 599
LL++DRGPV+E++VARTLRQV
Sbjct: 616 LLHEDRGPVLESIVARTLRQV 636
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 13/188 (6%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P T ++P + I L A A + + N +Q++IF T+Y+T+ N+L+ APTG+
Sbjct: 1299 PHTELLDLQP----LPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS-PLNMIVR 527
GKT A ++I ++ K VY+AP+KAL E + R+ L V
Sbjct: 1355 GKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVI 1406
Query: 528 ELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
ELTGD+ + + +IVTTPEKWD ++R + S V +LIIDE+HLL ++RGPV
Sbjct: 1407 ELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPV 1466
Query: 588 IEALVART 595
+E +V+RT
Sbjct: 1467 LEVIVSRT 1474
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 179/392 (45%), Positives = 247/392 (63%), Gaps = 40/392 (10%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G + ++ L+ +R +VD H
Sbjct: 245 EDLCCTLYDMLASAKSGDELQDELFELLGPGGLDLIEKLLQNRITIVDRFLNSSSDHKFQ 304
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAEN-DVSSTS 361
+L+ ++ P+YG QVT+Q+E E+Q+ K R+EEKR R + A E+ +VS
Sbjct: 305 VLQDNCKKILGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEG 364
Query: 362 F--------------------SSLIEASERKNPLDGL----IGSGQGSMAVTA------- 390
S+ I +R ++ + + Q + T+
Sbjct: 365 LLPFDPKELRLQREHALLNARSAPILGRQRDTEVEKIRYPHVYDSQAAARETSAFIAGAK 424
Query: 391 --LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSR 448
LP+G R++ K YEEV IP + + EK + I++LDE Q AF G K LNRIQS
Sbjct: 425 MILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLAFKGMKRLNRIQSI 484
Query: 449 IFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA 508
+F T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF G L K+EFKIVYVAPMKALA
Sbjct: 485 VFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALA 544
Query: 509 AEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSM 567
AE+T FS RL PL ++V+ELTGDMQLS++E+ TQM+VTTPEKWDV+TRKS D++LS
Sbjct: 545 AEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 604
Query: 568 LVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+VKLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 605 IVKLLILDEVHLLHEDRGPVLESIVARTLRQV 636
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Query: 432 AQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL 491
A A + + N +Q++IF T+Y+T+ N+L+ APTG+GKT A ++I ++
Sbjct: 1318 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY------ 1371
Query: 492 HKDEFKIVYVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGDMQLSRNELEETQMIVTTP 550
K VY+AP+KAL E + R+ L V ELTGD+ + + +IVTTP
Sbjct: 1372 --PTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTP 1429
Query: 551 EKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595
EKWD ++R + S V +LIIDE+HLL ++RGPV+E +V+RT
Sbjct: 1430 EKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 315 bits (806), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 180/394 (45%), Positives = 247/394 (62%), Gaps = 40/394 (10%)
Query: 246 SRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HG 300
+ +DL + +L S K G+E+ +L +L+G FE ++ L+ +R +V+ +
Sbjct: 251 TTEDLCCTLYEMLASPKSGDELQNELFELLGPEGFELIEKLLQNRSVIVERSLTCQNDNK 310
Query: 301 MLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAEN-DVSS 359
L+ + ++ P+YG QVT+Q+E E+ + K R+EEKR+ R + A E+ +VS
Sbjct: 311 FQTLQEQCKKFIGENAKPNYGCQVTIQSEQEKLLMKQYRREEKRNARREKQAGEDGEVSG 370
Query: 360 TSF-----------SSLIEASERKNPLDG--------------LIGSGQGSMAVTA---- 390
L + R P+ G + S +M +A
Sbjct: 371 EGLLCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGG 430
Query: 391 ----LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQ 446
LP+ R++ K YEEV IP + + EK++ IK+LDE Q AF G K LNRIQ
Sbjct: 431 AKVFLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQ 490
Query: 447 SRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506
S +F+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QH + G + KDEFKIVYVAPMKA
Sbjct: 491 SIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKA 550
Query: 507 LAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSL 565
LAAE+T FS RL PL + V+ELTGDMQLS+ E+ TQM+VTTPEKWDV+TRKS D++L
Sbjct: 551 LAAEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVAL 610
Query: 566 SMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
S LVKLLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 611 SQLVKLLILDEVHLLHEDRGPVLESIVARTLRQV 644
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 112/199 (56%), Gaps = 18/199 (9%)
Query: 403 YEEVIIPPTPTAQMKPGEKLIEIKELDEFAQA-----AFHGYKSLNRIQSRIFQTVYYTN 457
++ +I+P + P +L++++ L A + + N IQ++IF T+Y+T+
Sbjct: 1296 FQHLILP----ERHPPHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTD 1351
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+ APTG+GKT A ++I ++ K VY+AP+KAL E +
Sbjct: 1352 CNVLLGAPTGSGKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERIEDWKV 1403
Query: 518 RLS-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
R+ L V ELTGD+ + + +IVTTPEKWD ++R + S V +LIIDE
Sbjct: 1404 RIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDE 1463
Query: 577 VHLLNDDRGPVIEALVART 595
+HLL D+RGPV+E +V+RT
Sbjct: 1464 IHLLGDERGPVLEVIVSRT 1482
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/391 (46%), Positives = 243/391 (62%), Gaps = 39/391 (9%)
Query: 248 DDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIR-----HGML 302
+DL + +L S K G+E+ +L +L+G E ++ L+ +R +VD H
Sbjct: 245 EDLCCTLYDMLASIKSGDELQDELFELLGPEGLELIEKLLQNRITIVDRFLNSSNDHRFQ 304
Query: 303 LLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAE-------- 354
L+ ++ P+YG QVT+Q+E E+Q+ K R+EEKR R + A E
Sbjct: 305 ALQDNCKKILGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGL 364
Query: 355 -----------------NDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVTA------- 390
N S S +A K + S +M +A
Sbjct: 365 MCFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSAFIAGAKM 424
Query: 391 -LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRI 449
LP+G R++ K YEEV IP + + EK + I++LDE Q AF G K LNRIQS +
Sbjct: 425 ILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIV 484
Query: 450 FQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509
F+T Y TNEN+L+CAPTGAGKTNIAM+++LHEI QHF+ G + K+EFKIVYVAPMKALAA
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAA 544
Query: 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSML 568
E+T FS RL PL +IV+ELTGDMQLS++E+ TQM+VTTPEKWDV+TRKS D++LS +
Sbjct: 545 EMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQI 604
Query: 569 VKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
V+LLI+DEVHLL++DRGPV+E++VARTLRQV
Sbjct: 605 VRLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 13/188 (6%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGA 468
P T ++P + I L A A + + N +Q++IF T+Y+T+ N+L+ APTG+
Sbjct: 1298 PHTELLDLQP----LPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 469 GKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS-PLNMIVR 527
GKT A ++I ++ K VY+AP+KAL E + R+ L V
Sbjct: 1354 GKTVAAELAIFRVFNKY--------PTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVI 1405
Query: 528 ELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
ELTGD+ + + +IVTTPEKWD ++R + + V +LIIDE+HLL ++RGPV
Sbjct: 1406 ELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPV 1465
Query: 588 IEALVART 595
+E +V+RT
Sbjct: 1466 LEVIVSRT 1473
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/220 (62%), Positives = 168/220 (76%), Gaps = 2/220 (0%)
Query: 382 GQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKS 441
Q A LP+G R + K YEEV IPP + EK + + ELDE Q F G K
Sbjct: 14 AQIDFAQMLLPEGIRRDNNKMYEEVEIPPNEPMPIGFEEKAVFVSELDEIGQLVFKGMKR 73
Query: 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVY 500
LNRIQS +F+T Y TNEN+L+CAPTGAGKTNIAM++ILHEI QH + G + KD+FKIVY
Sbjct: 74 LNRIQSIVFETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVY 133
Query: 501 VAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS 560
VAPMKALAAE+T FS RL PL + V+ELTGDMQL++ E+ TQM+VTTPEKWDV+TRKS
Sbjct: 134 VAPMKALAAEMTNYFSKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKS 193
Query: 561 -SDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
D++LS +V+LLI+DEVHLL++DRGPV+E+LVARTLRQV
Sbjct: 194 VGDVALSQVVRLLILDEVHLLHEDRGPVLESLVARTLRQV 233
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 115/199 (57%), Gaps = 18/199 (9%)
Query: 403 YEEVIIPPTPTAQMKPGEKLIEIKELDEFAQA-----AFHGYKSLNRIQSRIFQTVYYTN 457
++ +I+P + P +L++++ L A + + + N IQ++IF T+Y+T+
Sbjct: 849 FQHLILP----ERHPPHTELLDLQPLPITALGNREYESLYKFTHYNPIQTQIFHTLYHTD 904
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
N+L+ APTG+GKT A ++I FR ++ K+VY+AP+KAL E +
Sbjct: 905 TNVLLGAPTGSGKTIAAEMAI-------FRVFNMYPTS-KVVYIAPLKALVRERIEDWKI 956
Query: 518 RLS-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
R+ L V ELTGD + + +IVTTPEKWD ++R + S V +LIIDE
Sbjct: 957 RIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVAILIIDE 1016
Query: 577 VHLLNDDRGPVIEALVART 595
+HLL +DRGPV+E +V+RT
Sbjct: 1017 IHLLGEDRGPVLEVIVSRT 1035
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 199/603 (33%), Positives = 313/603 (51%), Gaps = 92/603 (15%)
Query: 56 EEASTEVRQVYKQFIGAVVEFI-DGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVE 114
+E E RQ++ +F V+E I D E+PS+E + + P ++
Sbjct: 72 KEKEKENRQIFNKFKEIVLEMIGDDEIPSDEIASAVYETFMIVANPHKD----------- 120
Query: 115 KKSKMQTL--IGHAVSDASVYKVAS--LAQRLSKLQPSEHNVTLFSESLGNGSSDDFEFG 170
K SK ++L I H+ ++Y S + L P E + +ES+ + D FE
Sbjct: 121 KASKCESLRQIFHSFFKVAMYNKLSEQVGLLLQIKNPFESDSKASNESVQ--TIDSFE-- 176
Query: 171 SDLVFQAPARF--------------------------------------LVDGSFEDGAL 192
+ +Q P+++ L++ D L
Sbjct: 177 -SMEWQLPSKYQLQFEDNDEMSIFDEINHFINTKINNNLDEQKEKEKEKLINTPLSDMVL 235
Query: 193 M---GDESIAPSSFHDGWYDGSDSMDYNSAADGRNFNLSWLRDACDRIVRQSIS-QLSRD 248
+ G + GS++++ N+ D + + WLR+ C I SI + +
Sbjct: 236 IHQPGQIKKSKKLKKLAAAGGSNNLESNNVVDS-TYTIEWLREECSVI---SIGLGIPSE 291
Query: 249 DLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIRHGMLLLKSEK 308
++ I L + K E I D++ L+G E + D+I +R ++ ++ G
Sbjct: 292 EIYNTIMSFLKNKK--ETIEEDMIGLLGFDHLELIADIIKYRDSILGSVVSGY------- 342
Query: 309 TASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYAAENDVSSTSFSSLIEA 368
ASN + + ++QT+ E+ DK +K++K+ + + + I+
Sbjct: 343 RASNHSGPLNHF----SIQTKDEKDFDKQLKKDDKKRYKNDQQQQQQQQYQEEQIKFIDH 398
Query: 369 SERKNPLDGLIGSGQ---GSMAV-------TALPQGTVRKHLKGYEEVIIPPTPTAQMKP 418
S++ + + G + + ALP+GTVR + EV++P +
Sbjct: 399 SQQSFEQPTIYNQKEFTGGDVCIDLPYGGKIALPKGTVRTEKTTHTEVMVPYSLAKPFAD 458
Query: 419 GEKLIEIKE-LDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMIS 477
EKLIEI E + E ++AAF K LNRIQSR+F++ Y +NENIL+ APTGAGKTNIA+++
Sbjct: 459 NEKLIEIGESIAEISRAAFGSIKKLNRIQSRVFESAYKSNENILISAPTGAGKTNIALLT 518
Query: 478 ILHEIGQHFRD-GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536
ILHEI + GYL KD FKI+Y+AP+KALA+E+ FS+ L L ++ +ELTGDMQL+
Sbjct: 519 ILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSNSLKYLGIVSKELTGDMQLT 578
Query: 537 RNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTL 596
+ EL+ETQ+IVTTPEKWDVITRKSSD++L+ LV+L+IIDE+HLL+++RGPV+E +VARTL
Sbjct: 579 QKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEIHLLHEERGPVLECIVARTL 638
Query: 597 RQV 599
RQV
Sbjct: 639 RQV 641
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 9/157 (5%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+ N IQ+++F T+YYTN N+L+ +PTG+GKT A +++ + FRD + K+
Sbjct: 1324 FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMF----KVFRD----EPHMKV 1375
Query: 499 VYVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+AP+KAL E + + L + ELTGD + L+ ++ TTPEKWD I+
Sbjct: 1376 VYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGIS 1435
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
R + S V LLIIDE+HL+ + RGP++E +V+R
Sbjct: 1436 RNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVSR 1472
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 187/275 (68%), Gaps = 18/275 (6%)
Query: 333 QIDKLRRKEEKRHRRGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVT--- 389
Q++K +R EK + T AA +S+ + +A + L+ L S QGS ++
Sbjct: 369 QVEKSKRDAEKSKKAAT--AANEAISAGQW----QAGRKMLDLNDLTFS-QGSHLMSNKR 421
Query: 390 -ALPQGTVRKHLKGYEEVIIP---PTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRI 445
LP G+ R+ K YEE+ +P P P A+ GEKL+ + EL ++AQ AF GYKSLNRI
Sbjct: 422 CELPDGSYRRQKKSYEEIHVPALKPRPFAE---GEKLVSVSELPKWAQPAFDGYKSLNRI 478
Query: 446 QSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHF-RDGYLHKDEFKIVYVAPM 504
QSR+ + + E++L+CAPTGAGKTN+A++++L EIG H DG + DEFKIVY+APM
Sbjct: 479 QSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPM 538
Query: 505 KALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMS 564
K+L E+ +FS RL+P + V E+TGD Q+S+ + TQ+IV TPEK+DV+TRK + +
Sbjct: 539 KSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERA 598
Query: 565 LSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+ +V+LLIIDE+HLL+DDRGPV+E++V RT+RQ+
Sbjct: 599 YNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQM 633
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 108/190 (56%), Gaps = 14/190 (7%)
Query: 409 PPTPTAQMKPGE-KLIEIKELDE-FAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPT 466
PPT ++P + KE FA++ G+K N IQ+++F+TV+ +NEN++VCAP
Sbjct: 1290 PPTELLDLQPLPISAVTNKEFQTVFAES---GFKVFNPIQTQVFRTVFESNENVIVCAPN 1346
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMI 525
G+GKT IA +++L +HF + E K VY+ PM+ +A +V + RL P +
Sbjct: 1347 GSGKTAIAELAVL----RHFEN----TPEAKAVYITPMEDMATKVYADWKRRLEPAIGHT 1398
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
+ LTG+ + + Q+I++TPE+WD I+R+ VKL I D++H++ G
Sbjct: 1399 IVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNG 1458
Query: 586 PVIEALVART 595
V E + +RT
Sbjct: 1459 AVFEVVCSRT 1468
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/220 (53%), Positives = 161/220 (73%), Gaps = 1/220 (0%)
Query: 380 GSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGY 439
GS S LP+G+ R+ KGYEE+ +P A + E+L++IKEL E++ AF
Sbjct: 458 GSRLMSNKAVKLPEGSFRRTGKGYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNT 517
Query: 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKI 498
+SLNRIQS ++ + T+ENIL+CAPTGAGKTN+AM+ IL+E+ +H R D + FKI
Sbjct: 518 QSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKI 577
Query: 499 VYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITR 558
VY+AP+KAL E+ FS RL+P N+ V ELTGD QL++ ++ ETQ+IVTTPEKWD+ITR
Sbjct: 578 VYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITR 637
Query: 559 KSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQ 598
K++D+S LV+L+IIDEVHLL+D+RGPV+E++VAR R
Sbjct: 638 KANDLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRH 677
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 436 FHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDE 495
+ +K N+IQ+++F +VY TN+++ + AP G+GKT A +++LH Q +D
Sbjct: 1359 YPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQ--------EDY 1410
Query: 496 FKIVYVAPMKALAAEVTRTFSSRLSPL--NMIVRELTGDMQLSRNELEETQMIVTTPEKW 553
VY+AP++ + + + S L ++ +LTG+ ++ +I TP +W
Sbjct: 1411 GTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQW 1470
Query: 554 DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
D ++++ M V I DE+ LL GP+ E +++R
Sbjct: 1471 DSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISR 1511
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 242 bits (618), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 218/388 (56%), Gaps = 27/388 (6%)
Query: 226 NLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQD 285
+L+WL++ C+ I + S ++L L A+ L + + I DLL+LVG + + D
Sbjct: 71 DLTWLQNCCNEISQSSSTELDASVLFEAVIMSLKATEDQCAIQEDLLNLVGLDHIDLISD 130
Query: 286 LISHRKQLVDAIRHGMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRH 345
++++ L++ + T+ +Q + T + +D L+ + +
Sbjct: 131 IVANSSNLIEE------YMNQNDTSIAAQLSDGYTSEAGSSATHGQGLLDSLKSRPRRFS 184
Query: 346 ----RRGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQGSMAVTALPQGTVRKHLK 401
RG + + + + +R +IG ALP G+ R+ +
Sbjct: 185 RSRDNRGPLFTGQQVFEVEKYPH-VYGDKRLGNTISVIGKK------FALPAGSEREDYQ 237
Query: 402 GYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENIL 461
YEE+I+P A GEKL+EI +D + F Y++LNRIQS ++ Y TNEN+L
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENML 297
Query: 462 VCAPTGAGKTNIAMISILHEIGQHFRDGYL---------HKDEFKIVYVAPMKALAAEVT 512
+CAPTGAGKT++A++++L I + L H+D+FKIVY+APMKALAAEV
Sbjct: 298 ICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVV 357
Query: 513 RTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLVKL 571
RL+ L + RELTGDMQL++ E+ ETQ++VTTPEKWDV+TRKS D L+ V+L
Sbjct: 358 EKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRL 417
Query: 572 LIIDEVHLLNDDRGPVIEALVARTLRQV 599
+IIDEVH+L+D+RG VIE+LVART R V
Sbjct: 418 VIIDEVHMLHDERGAVIESLVARTQRLV 445
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 9/157 (5%)
Query: 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498
+ N +Q++ F T+Y+T+ NI V APTG+GKT A ++ + + + K+
Sbjct: 1132 FSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKS--------KV 1183
Query: 499 VYVAPMKALAAEVTRTFSSRL-SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+APMKAL E + + RL P+ + + ELTGD + +I+TTPEKWD IT
Sbjct: 1184 VYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKWDGIT 1243
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594
R V L+I+DE+HLL DRGPV+E +V+R
Sbjct: 1244 RSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSR 1280
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 239 bits (609), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 223/389 (57%), Gaps = 22/389 (5%)
Query: 223 RNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFET 282
R+ + WL+ R +I + D + I + D+ E L+ L+G + F+
Sbjct: 261 RDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR---ECENQLVLLLGFNTFDF 317
Query: 283 VQDLISHRKQLVDAIRHGMLLLKSEKTASNSQSRM------PSYGTQVTVQTESERQIDK 336
++ L HR ++ LL S ++ + + M P + E+E++
Sbjct: 318 IKVLRQHRMMILYCT-----LLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKE--D 370
Query: 337 LRRKEEKRHRRGTEYAAENDVSSTSFSSLIEASERKNPLDG---LIGSGQGSMA--VTAL 391
L R+E R R + + D+ + EA + LD + G MA L
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQL 430
Query: 392 PQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQ 451
P G+ R+ KGYEEV +P E+L+ +++L ++AQA F G+K+LNRIQS++++
Sbjct: 431 PDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 452 TVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFR-DGYLHKDEFKIVYVAPMKALAAE 510
T+EN+L+CAPTGAGKTN+A++ +L EIG+H DG ++ D+FKI+Y+APM++L E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVK 570
+ +F RL+ + V ELTGD QL + E+ TQ+IV TPEKWD+ITRK + + + LV+
Sbjct: 551 MVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVR 610
Query: 571 LLIIDEVHLLNDDRGPVIEALVARTLRQV 599
L+I+DE+HLL+DDRGPV+EALVAR +R +
Sbjct: 611 LIILDEIHLLHDDRGPVLEALVARAIRNI 639
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 15/189 (7%)
Query: 409 PPTPTAQMKPGEKLIEIKELDEFAQAAFH--GYKSLNRIQSRIFQTVYYTNENILVCAPT 466
PPT ++P + + L A + + + N IQ+++F TVY +++N+ V APT
Sbjct: 1297 PPTELLDLQP----LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 1352
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMI 525
G+GKT A +IL + L E + VY+ PM+ALA +V + + LN
Sbjct: 1353 GSGKTICAEFAILRML--------LQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1404
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V LTG+ L + +I++TPEKWD+++R+ + L ++DEVHL+ + G
Sbjct: 1405 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 1464
Query: 586 PVIEALVAR 594
PV+E + +R
Sbjct: 1465 PVLEVICSR 1473
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 153/210 (72%), Gaps = 1/210 (0%)
Query: 391 LPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIF 450
LP G+ RK KGYEEV +P E+L + +L ++ Q F G+K+LNRIQSR++
Sbjct: 430 LPDGSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLY 489
Query: 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHF-RDGYLHKDEFKIVYVAPMKALAA 509
+ ++EN+L+CAPTGAGKTN+A+++++ EIG+H DG ++ +FKI+YVAPMK+L
Sbjct: 490 KAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQ 549
Query: 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLV 569
E+ F RL+ N+ V ELTGD QL+R ++ TQ+IV TPEKWD+ITRK + + LV
Sbjct: 550 EMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLV 609
Query: 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
+L+IIDE+HLL+D+RGPV+EALVART+R +
Sbjct: 610 RLVIIDEIHLLHDERGPVLEALVARTIRNI 639
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 408 IPPTPTAQMKPGEKLIEIKELDEFAQAAFHG--YKSLNRIQSRIFQTVYYTNENILVCAP 465
+PPT ++P + I L + +F+ + N IQ+++F VY ++EN+ V AP
Sbjct: 1296 MPPTELLDLQP----LPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAP 1351
Query: 466 TGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMI 525
TG+GK IA +I+ + + + + VY+ +ALA V + S+ L++
Sbjct: 1352 TGSGKMTIAEFAIMR--------LFTTQSDARCVYLVSEEALADLVFADWHSKFGSLDIK 1403
Query: 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585
V +LTG+ + + Q+++TT +KWDV++R+ LV L I+DE+ L+ + G
Sbjct: 1404 VVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEG 1463
Query: 586 PVIEALVAR 594
PV+E + +R
Sbjct: 1464 PVLEIVCSR 1472
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 160/226 (70%), Gaps = 10/226 (4%)
Query: 383 QGSMAVT----ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFH- 437
QGS +T P+G+ R+ KG+EE+ +P P E+LI I+EL E+++ F
Sbjct: 487 QGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWSRLPFEE 546
Query: 438 -GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD---GYLHK 493
G KSLNR+QS++F + T+ N+L+ APT +GKTN+AM++ILHEIG++ RD G +
Sbjct: 547 SGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKN-RDRDSGKIRL 605
Query: 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW 553
D FKIVY+APMK+L E+ FS RL ++V ELTGD L+ ++ ETQ+IVTTPEKW
Sbjct: 606 DAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKW 665
Query: 554 DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
D+ITRKS D + + LVKL+IIDE+HLL+D+RGPV+E +VARTLR +
Sbjct: 666 DIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMI 711
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 112/203 (55%), Gaps = 22/203 (10%)
Query: 402 GYEEVIIPPTPTAQMKPGEKLIEIKEL------DEFAQAAFH-GYKSLNRIQSRIFQTVY 454
++ +I+P + P L++++ L D A++ F + N IQ+++F +Y
Sbjct: 1355 SFQHLILP----EKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMY 1410
Query: 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514
+N+N + APT +GKT A I+++ Q+ + K+VY+APM+ LA+ +
Sbjct: 1411 QSNDNAFISAPTNSGKTVCAEIALIRCFKQN--------PKAKVVYLAPMQDLASVRLKD 1462
Query: 515 FSSRL---SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKL 571
+S++ SP ++V +LTGD L+ + +IVT EKWD+++RK + L
Sbjct: 1463 WSNKFGVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINL 1522
Query: 572 LIIDEVHLLNDDRGPVIEALVAR 594
LI+DE+HL+ + GP +E +V+R
Sbjct: 1523 LIVDELHLIGGEYGPTMEIVVSR 1545
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 207/344 (60%), Gaps = 32/344 (9%)
Query: 265 EEIAGDLLDLVGDSAFETVQDLISHRKQLV-DAIRHGMLLLKSEKTASNSQSRMPSYGTQ 323
+E+ +LLD +G + V L+ HR+ +V I +LL+K N+ + P + TQ
Sbjct: 131 QELEKELLDFLGTGNIDLVSLLLQHRRMIVATPIETTILLIK------NAVNSTPEFLTQ 184
Query: 324 VTVQTESERQIDKLRRKEEKRHRRGTEYAAENDVSSTSFSSLIEASERKNPLDGLIGSGQ 383
++ + L+ E+ ++R+ A + EA + +GQ
Sbjct: 185 QDIRNQV------LKSAEDAKNRKLN--PATKIIKYPHVFRKYEAGSTT----AMAFAGQ 232
Query: 384 GSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPG--EKLIEIKELDEFAQAAFHGYKS 441
LP GT R +EE+IIP A K KL++I +LD F + F Y++
Sbjct: 233 K----FTLPVGTTRMSYNTHEEIIIPAADQASNKNYLYTKLLKISDLDHFCKTVF-PYET 287
Query: 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQH-FRDGY----LHKDEF 496
LN+IQS ++ Y TNEN+L+CAPTGAGKT+IA+++I++ I Q +G + D+F
Sbjct: 288 LNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDF 347
Query: 497 KIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVI 556
K++YVAP+KALAAE+ FS +L+P N+ VRELTGDMQL++ E+ TQ+IVTTPEKWDV+
Sbjct: 348 KVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVV 407
Query: 557 TRKSS-DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599
TRK++ D L VKLLIIDEVHLL++DRG VIE LVARTLRQV
Sbjct: 408 TRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV 451
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 18/207 (8%)
Query: 394 GTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQA-----AFHGYKSLNRIQSR 448
G H ++ +I P T Q K L++++ L A + + +K N +Q+
Sbjct: 1091 GCESTHAISFQHLIRPFNETLQTK----LLKLRPLPTSALQNPLIESIYPFKYFNPMQTM 1146
Query: 449 IFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA 508
F T+Y TNEN V +PTG+GKT +A ++I H + F KIVY+APMKAL
Sbjct: 1147 TFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAF-KTFPGK-------KIVYIAPMKALV 1198
Query: 509 AEVTRTFSSRLSPLNM-IVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSM 567
E + +++P+ V ELTGD ++ + +++TTPEK+D I+R
Sbjct: 1199 RERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQ 1258
Query: 568 LVKLLIIDEVHLLNDDRGPVIEALVAR 594
V L+I+DE+HLL DRGP++E +V+R
Sbjct: 1259 DVSLIIMDEIHLLASDRGPILEMIVSR 1285
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 152/219 (69%), Gaps = 12/219 (5%)
Query: 386 MAVT--ALPQGTVRKHLKGYEEVIIPPTPTAQMKP--GEKLIEIKELDEFAQAAFHGYK- 440
M VT +LP+G+ ++ Y+E+ IP A KP +L EI L ++ Q AF +
Sbjct: 441 MTVTKVSLPEGSFKRVKPQYDEIHIP----APSKPVIDYELKEITSLPDWCQEAFPSSET 496
Query: 441 -SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHF--RDGYLHKDEFK 497
SLN IQS++F + + N+L+CAPTG+GKTNIA++++L + H+ + L+ FK
Sbjct: 497 TSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFK 556
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
IVY+AP+KAL E R F RL+ L + V ELTGD +LSR +++ETQ++V+TPEKWD+ T
Sbjct: 557 IVYIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITT 616
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTL 596
R S+++++ LV+LLIIDE+HLL+DDRGPV+E++VART
Sbjct: 617 RNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTF 655
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 409 PPTPTAQMKPGEKLIEIKEL--DEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPT 466
PPTP + I EL D+F++ +K+ N+IQS++F+++Y +N+++ V +
Sbjct: 1319 PPTPLLENIS----ISTSELGNDDFSEV--FEFKTFNKIQSQVFESLYNSNDSVFVGSGK 1372
Query: 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL--NM 524
G GKT +A +++L+ H+R +++ + VY+ P + ++ R S L
Sbjct: 1373 GTGKTAMAELALLN----HWR-----QNKGRAVYINPSGEKIDFLLSDWNKRFSHLAGGK 1423
Query: 525 IVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD- 583
I+ +L D L+ L ++ +++ TP ++++++R+ ++L+I D+ H ++
Sbjct: 1424 IINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGV 1483
Query: 584 RGPVIEALVARTL 596
G V E L++R +
Sbjct: 1484 YGAVYETLISRMI 1496
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 107/178 (60%), Gaps = 12/178 (6%)
Query: 422 LIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKT---NIAMISI 478
L + E+ ++ F + N IQS+ F + YT+ N ++CAPTG+GKT +A+ +
Sbjct: 261 LKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRL 320
Query: 479 LHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR- 537
L E+ + + KIVY+AP+KAL ++ + + P+ + +ELTGD +
Sbjct: 321 LMEVPLPWLN-------IKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDL 373
Query: 538 NELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVAR 594
E++ +I+TTPEKWD +TRK D SL LV+L +IDEVH++ D +RGP +E +V+R
Sbjct: 374 FEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSR 431
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 111/181 (61%), Gaps = 13/181 (7%)
Query: 425 IKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNI---AMISILHE 481
+ E+ + + F + N IQS+ + + Y++ N ++CAPTG+GKT I A+I +L +
Sbjct: 133 VTEIPKQFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQ 192
Query: 482 IGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR-NEL 540
+ + + KIVY+AP+KAL + + ++ P+ + +ELTGD ++ E+
Sbjct: 193 VPMPWTN-------VKIVYMAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDDLFEI 245
Query: 541 EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN-DDRGPVIEALVARTLRQV 599
+ +I+TTPEKWD +TRK D +L LV+L +IDEVH+L ++RG +E +V+R ++ +
Sbjct: 246 QHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSR-MKTI 304
Query: 600 Y 600
Y
Sbjct: 305 Y 305
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 410 PTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAG 469
P K +K + L + + F + N++QS F ++Y +NEN ++ +PTG+G
Sbjct: 108 PKKVTIRKSAKKCLSTTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSG 166
Query: 470 KTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL 529
KT + ++IL I + D + KI+Y+AP K+L E+ + + S +N+ V L
Sbjct: 167 KTVLFELAILRLIKETNSD----TNNTKIIYIAPTKSLCYEMYKNWFP--SFVNLSVGML 220
Query: 530 TGDMQLSRNE-LEETQMIVTTPEKWDVITRKSSDMS-LSMLVKLLIIDEVHLLNDDRGPV 587
T D E ++ +I+TTPEKWD++TR+ SD S L LVKL+++DE+H + + RG
Sbjct: 221 TSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGAS 280
Query: 588 IEALVAR 594
+E ++ R
Sbjct: 281 LEVILTR 287
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 434 AAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHK 493
A G + L Q Q EN++V APTG+GKT IA+++I++ L +
Sbjct: 20 AKLAGVERLFEPQYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNS---------LAR 70
Query: 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW 553
+ Y+ P+K++A E +FS LS + + ++ GD R E +++ T EK+
Sbjct: 71 AGGRAFYLVPLKSVAYEKYTSFSI-LSRMGLKLKISVGDF---REGPPEAPVVIATYEKF 126
Query: 554 DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 596
D + R S SL+ V +LI+DE+H ++D RGP++E++V+R L
Sbjct: 127 DSLLRVSP--SLARNVSVLIVDEIHSVSDPKRGPILESIVSRML 168
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
EN+LV PT +GKT IA I+I ++ L ++ K VY+ P+KALA E R F
Sbjct: 39 GENLLVAIPTASGKTLIAEIAIANK---------LLEEGGKAVYIVPLKALAEEKFREFK 89
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
L + V TGD L + +I+ T EK+D + R S S VK+L+IDE
Sbjct: 90 D-WERLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIRDVKMLVIDE 146
Query: 577 VHLLND-DRGPVIEALVARTL 596
+HL+ DRG +E ++ + L
Sbjct: 147 IHLIGSRDRGATLEFIITQML 167
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 13/162 (8%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G K LN Q+ + +L+ +PTG+GKT IA + I+ +L K+ K
Sbjct: 20 GIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGII---------SFLLKNGGK 70
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+YV P++AL E TF S + V +GD L+ +I+TT EK D +
Sbjct: 71 AIYVTPLRALTNEKYLTFKDWES-IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLW 129
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQ 598
R D ++DE+H LND +RGPV+E++ R R+
Sbjct: 130 RHRPDWLNE--ANYFVLDELHYLNDPERGPVVESVTIRAKRR 169
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G K LN Q+ + ++ +L+ PT +GKT +A + ++ +L K
Sbjct: 23 GIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMI---------SHLLNKGGK 73
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+YV P++AL +E TF L V +GD L +IVTT EK D +
Sbjct: 74 AIYVTPLRALTSEKYSTFKD-WEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSLW 132
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQ 598
R S++ + ++DE H +ND DRGPV+E + R RQ
Sbjct: 133 RHSAEWLKD--IDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQ 172
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 19/161 (11%)
Query: 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYV 501
LN Q + Q+ +++N+L+ APTG GK+ +AM+ + + + ++VY
Sbjct: 8 LNEFQKKALQSFLMSDKNLLITAPTGTGKSFLAMLMAM-------------ETKSRVVYT 54
Query: 502 APMKALAAEVTRTFSSRLSPLNMIVRE---LTGDMQLSRNELEETQMIVTTPEKWDVITR 558
P++ALA ++ F ++++PL + LT ++ E E ++I TT EK D I R
Sbjct: 55 VPLRALALQLNDDFHNKVAPLVNGYADSVALTSEVYEEDPENLEERVIFTTYEKADAIFR 114
Query: 559 KSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQ 598
+ + ++ LIIDE+H + D +RG IE L+A + +
Sbjct: 115 RHYPWTDR--IETLIIDEIHNIGDKERGKAIENLIAYAMNE 153
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
EN L+ PT +GKT IA I+I++ L K+ K VY+ P+KALA E + F
Sbjct: 39 GENALIAIPTASGKTLIAEIAIVNR---------LLKEGGKAVYLVPLKALAEEKFKEFK 89
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
L + V TGD L +I+ T EK+D + R S S VK+L++DE
Sbjct: 90 D-WEELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGS--SWIRNVKVLVVDE 146
Query: 577 VHLLND-DRGPVIEALVARTLRQ 598
+HL+ DRG +E ++ + L +
Sbjct: 147 IHLIGSRDRGATLEFIITQMLNR 169
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
N+N L+ PT +GKT I +++++ H DG + K +++ P+KALA+E F
Sbjct: 32 NKNFLISIPTASGKTLIGEMALIN----HLLDGNKNPTNKKGIFIVPLKALASEKYEEFK 87
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
S+ + + GD +L + +I+TT EK D + R D V ++++DE
Sbjct: 88 SKYERYGLRIALSIGDYD-EDEDLSKYHLIITTAEKLDSLWRHKIDWIND--VSVVVVDE 144
Query: 577 VHLLNDD-RGPVIEALVAR 594
+HL+ND+ RG +E L+ +
Sbjct: 145 IHLINDETRGGTLEILLTK 163
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEF 496
G ++L Q + ENIL+ + T +GKT +A ++ ++ + L D+
Sbjct: 20 RGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNV--------LVNDKK 71
Query: 497 KIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVI 556
+V V P+KALA E F++ S L + V TGD L +I+TT EK D +
Sbjct: 72 SLVAV-PLKALAFEKLNDFNT-YSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSL 129
Query: 557 TRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVAR 594
R + V LIIDE+H +NDD RGP+IE++VA+
Sbjct: 130 LRLKPSWIWN--VGQLIIDEIHFINDDERGPIIESIVAK 166
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 17/158 (10%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G + L Q+ + +N+LV PT +GKT IA ++ +H +H +G K
Sbjct: 20 GIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMA-MH---RHIANG------GK 69
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P+KALA+E F ++ + V TGD+ + L + +IV T EK D +
Sbjct: 70 CLYIVPLKALASEKYEEFGNK----GVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLL 125
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVAR 594
R + + L++IDE+HL++ DRGP +E ++A+
Sbjct: 126 RNGARWIPD--ITLVVIDEIHLIDSPDRGPTLEMVIAK 161
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 13/161 (8%)
Query: 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEF 496
G +S Q+ ++ +N L+ PT +GKT IA I+++H I G
Sbjct: 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG------- 69
Query: 497 KIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVI 556
K VY+ P+KALA E + F + + V TGD L + +I+ T EK+D +
Sbjct: 70 KAVYIVPLKALAEEKFQEFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSL 128
Query: 557 TRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 596
R S S VK+L+ DE+HL+ DRG +E ++A L
Sbjct: 129 LRHGS--SWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G K L Q+ + +N+L PT +GKT +A ++++ I R+G K
Sbjct: 20 GIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAI----REGG------K 69
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P++ALA+E F L+P + V TGD+ + L +IV T EK D +
Sbjct: 70 ALYIVPLRALASEKFERF-KELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLL 128
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLR 597
R + S + +++DE+HLL+ +RGP +E + + +R
Sbjct: 129 RNGT--SWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMR 167
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G + L Q+ + N++ PT +GKT IA +++L I + D +
Sbjct: 21 GVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGG-DSPTFSGDGT 79
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P++ALA E + F + + V TG+ + L + ++V T EK D +
Sbjct: 80 ALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLV 138
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVARTLRQVYN 601
R + + ++ DEVHL++DD RGP +E +A+ +QV +
Sbjct: 139 RNGAGWIDDL--SCVVADEVHLVDDDHRGPTLEVTLAKLRQQVAD 181
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G + L Q+ + N++ PT +GKT IA +++L I + D +
Sbjct: 21 GVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGG-DSPTFSGDGT 79
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P++ALA E + F + + V TG+ + L + ++V T EK D +
Sbjct: 80 ALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLV 138
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVARTLRQVYN 601
R + + ++ DEVHL++DD RGP +E +A+ +QV +
Sbjct: 139 RNGAGWIDDL--SCVVADEVHLVDDDHRGPTLEVTLAKLRQQVAD 181
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G ++LN QS + + +LV +PT +GKT IA + +++ YL K
Sbjct: 23 GIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMIN---------YLLSKGGK 73
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P++AL E TF L + +GD LE +IVTT EK D +
Sbjct: 74 AIYITPLRALTNEKYNTFKD-WETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLW 132
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQ 598
R + V ++DE H LND +RGP +E++ R ++
Sbjct: 133 RHKAKWLNE--VSYFVLDEFHYLNDPERGPTVESVAIRAKKR 172
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 16/142 (11%)
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
+N L+C PT +GKT I +++L+ H D + K +++ P+KALA+E F
Sbjct: 33 KNFLICIPTASGKTLIGEMALLN----HVLDENYNLTGKKGLFIVPLKALASEKFDEFQK 88
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS----SDMSLSMLVKLLI 573
+ + V GD ++ +L + +I+TT EK D + R + D+SL+ +
Sbjct: 89 KYETYGIKVGMSIGDYD-TKEDLSKYNIIITTSEKLDSLMRHNIEWIKDLSLA------V 141
Query: 574 IDEVHLLNDD-RGPVIEALVAR 594
IDE+HL+ D+ RG +E ++ +
Sbjct: 142 IDEIHLIGDNERGGTLEVILTK 163
>sp|O27830|HELX_METTH Uncharacterized ATP-dependent helicase MTH_1802
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_1802 PE=3 SV=1
Length = 862
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 426 KELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQH 485
+ D+F +A + ++R N+LV +PTG+GKT A +SI+ E+ +
Sbjct: 28 RTFDDFTEAQRYAIMDIHR------------GRNVLVSSPTGSGKTLTAFLSIISELTRL 75
Query: 486 FRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIV----REL-------TGD-- 532
DG L +D +Y++P+KAL ++ R LS + I R+L TGD
Sbjct: 76 ADDGEL-EDSVYCIYISPLKALDNDIERNLEEPLSAIRDIAAGEGRDLEIRKAVRTGDTT 134
Query: 533 -MQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587
+ SR + +++TTPE ++ V+ +I+DE+H L D++ V
Sbjct: 135 SYERSRMLKKPPHILITTPETLSILLVAPKFREKLSTVRYVIVDEIHSLADNKRGV 190
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
+NI+V PT AGKT IA +I K + K +Y+ P+++LA E S
Sbjct: 38 KNIMVSVPTAAGKTLIAYSAIYETF----------KKKLKSIYIVPLRSLAMEKYEEL-S 86
Query: 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577
RL L M V+ G+ + + ++ +++ T EK D + D + V L++IDE+
Sbjct: 87 RLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEI 144
Query: 578 HLLNDD-RGPVIEALVARTLRQV 599
H++ D+ RGP +E ++ T R V
Sbjct: 145 HMIGDEYRGPTLETVIT-TARYV 166
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G + L Q+ ++ +N+++ PT +GKT ++ I ++++ L + K
Sbjct: 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNK---------LLSEGGK 70
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
VY+ P+KALA E R F L + V TGD + L +IV T EK+D +
Sbjct: 71 AVYLVPLKALAEEKYREFKE-WEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLL 129
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 596
R + S VKL++ DEVHL+ DRG +E ++ L
Sbjct: 130 RHGA--SWIKDVKLVVADEVHLIGSYDRGATLEMILTHML 167
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518
N+L PT +GKT +A +++L I G K +Y+ P++ALA+E R F
Sbjct: 41 NLLAAIPTASGKTLLAELAMLKSI---LAGG-------KALYIVPLRALASEKFRRF-RE 89
Query: 519 LSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVH 578
S L + V TGD L L +IV T EK D + R ++ + +++ DEVH
Sbjct: 90 FSELGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLR--NETVWMQEISVVVADEVH 147
Query: 579 LLND-DRGPVIEALVARTLRQV 599
L++ DRGP +E +A+ LR++
Sbjct: 148 LIDSPDRGPTLEVTLAK-LRKM 168
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
+N+L PT +GKT +A +++L + G K +Y+ P++ALA+E R F
Sbjct: 39 GKNLLAAIPTASGKTLLAELAMLKSV---LAGG-------KALYIVPLRALASEKFRRFQ 88
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
S L + V TGD L +IV T EK D + R ++ + + ++++DE
Sbjct: 89 D-FSELGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVVDE 145
Query: 577 VHLLND-DRGPVIEALVARTLRQV 599
VHL++ DRGP +E +A+ LR++
Sbjct: 146 VHLIDSADRGPTLEVTLAK-LRKM 168
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 20/149 (13%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF- 515
+N+L PT +GKT +A +++L I + K +Y+ P+KALA+E F
Sbjct: 39 GKNLLAAIPTASGKTLLAEMAMLKSIAEG----------GKAIYIVPLKALASEKYDRFL 88
Query: 516 -SSRL--SPLNMIVRELTGDMQLSRNE-LEETQMIVTTPEKWDVITRKSSDMSLSMLVKL 571
S+L P + V TGD SR+E L E +IV T EK D + R + LS L +
Sbjct: 89 EFSKLPIKPDGVKVGIATGDFD-SRDEYLGEKDIIVATSEKTDSLLRNGASW-LSGL-SV 145
Query: 572 LIIDEVHLLND-DRGPVIEALVARTLRQV 599
++ DEVHL++ +RGP +E +A+ LR++
Sbjct: 146 VVADEVHLIDSPNRGPTLEVTLAK-LRKI 173
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G + L Q+ + EN++ PT +GKT IA +++L + R G K
Sbjct: 21 GIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVA---RGG-------K 70
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P++ALA+E F + + TG+ + L + ++V T EK D +
Sbjct: 71 ALYIVPLRALASEKQADF-EEFEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLV 129
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLR 597
R +D + ++ DEVHL++D +RGP +E +A+ R
Sbjct: 130 R--NDAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLRR 168
>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0294 PE=3 SV=1
Length = 841
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517
+N+L+C+PTG+GKT A ++ ++E+ + + L +D I+YV+P++AL ++ R
Sbjct: 50 KNVLICSPTGSGKTLSAFLAGINELIKLSMENKL-EDRIYILYVSPLRALNNDIERNLKE 108
Query: 518 RLSPLNMIVREL---------------TGDMQLSRNELEETQMIVTTPEKWDVITRKSSD 562
L + + +E+ T Q R + +++TTPE +
Sbjct: 109 PLKEIYDVAKEIGIELDEIRVAVRTSDTTSSQKQRMLKKPPHILITTPESLAIALNSPKF 168
Query: 563 MSLSMLVKLLIIDEVHLLNDDRG 585
L +K +I+DE+H L + RG
Sbjct: 169 SQLLSGIKYVIVDEIHALTNKRG 191
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 14/142 (9%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
+N+L PT +GKT +A +++L + G K +Y+ P++ALA+E R F
Sbjct: 39 GKNLLAAIPTASGKTLLAELAMLKSV---LNGG-------KALYIVPLRALASEKFRRF- 87
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
S L M V TGD L +IV T EK D + R ++ + + +++ DE
Sbjct: 88 QEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVADE 145
Query: 577 VHLLND-DRGPVIEALVARTLR 597
VHL++ DRGP +E +++ R
Sbjct: 146 VHLIDSPDRGPTLEITLSKLRR 167
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G +SL Q+ E+++ PT +GKT +A +++L I R G
Sbjct: 21 GIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLSAID---RGG-------T 70
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT 557
+Y+ P++ALA+E F++ + V TG + + L + +IV T EK D +
Sbjct: 71 ALYIVPLRALASEKREEFAA-FEEYGLSVGVTTGSYEDTGEWLADKDIIVATSEKVDSLV 129
Query: 558 RKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVARTLRQV 599
R + + ++ DEVHL++D+ RGP +E +A+ LR+V
Sbjct: 130 RNGAPWIDDL--DCVVADEVHLVDDEHRGPTLEVTLAK-LRRV 169
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 19/144 (13%)
Query: 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS-- 516
N++V PT AGKT IA S ++E Q K +Y+ P+++LA E FS
Sbjct: 39 NVVVSVPTAAGKTLIAY-SAIYETFQR---------NLKSIYIVPLRSLAME---KFSEL 85
Query: 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576
SRL L + V+ GD S + ++ ++ T EK D + D + V LL++DE
Sbjct: 86 SRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHH--DPYILNDVGLLVLDE 143
Query: 577 VHLLNDD-RGPVIEALVARTLRQV 599
+H + D+ RGP +E VA R V
Sbjct: 144 IHTIGDESRGPTLET-VASIARYV 166
>sp|P95949|HELX_SULSO Uncharacterized ATP-dependent helicase SSO0112 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0112 PE=3 SV=1
Length = 875
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 21/152 (13%)
Query: 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516
N N+LV +PTG+GKT A + IL + + D +D+ +Y++P++AL ++ R
Sbjct: 45 NYNVLVSSPTGSGKTLAAFLGILDSLFE-LGDNNELEDKVYAIYISPLRALNNDMQRNL- 102
Query: 517 SRLSPLNMI--VRELTGDMQLSRNELEET------------QMIVTTPEKWDV-ITRKSS 561
L PLN + V D+++ + T +++TTPE + + IT
Sbjct: 103 --LEPLNELRQVNSKLPDVRVGIRTSDTTPYEKQKMLKKPPHILITTPESFGISITSPKF 160
Query: 562 DMSLSMLVKLLIIDEVH-LLNDDRGPVIEALV 592
L+ VK +I+DE+H L N RG + A++
Sbjct: 161 SQKLTD-VKWIIVDEIHELANSKRGAYLSAML 191
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 21/145 (14%)
Query: 451 QTVYY--TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA 508
+ VY+ +++ V A T AGKT +A +I H++ K +Y +P+KAL+
Sbjct: 336 EAVYHLEQGDSVFVAAHTSAGKTVVAEYAI----------AMAHRNMTKTIYTSPIKALS 385
Query: 509 AEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSML 568
+ R F +N+ + +TGD+Q++ + ++ T E + + +D+
Sbjct: 386 NQKFRDFKETFDDVNIGL--ITGDVQIN----PDANCLIMTTEILRSMLYRGADLIRD-- 437
Query: 569 VKLLIIDEVHLLND-DRGPVIEALV 592
V+ +I DEVH +ND DRG V E ++
Sbjct: 438 VEFVIFDEVHYVNDQDRGVVWEEVI 462
>sp|P30015|LHR_ECOLI Probable ATP-dependent helicase lhr OS=Escherichia coli (strain
K12) GN=lhr PE=3 SV=2
Length = 1538
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 28/165 (16%)
Query: 436 FHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMI----SILHEIGQHFRDGYL 491
+K +Q + + V +E+ LV APTG+GKT A + + E G+ R+ +
Sbjct: 24 LRAFKQPTAVQPQTWH-VAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHK 82
Query: 492 HKDEFKIVYVAPMKALAAEVTRTFSSRL------------SPLNMIVRELTGDM------ 533
K +I+Y++P+KAL +V R L + +N+ V TGD
Sbjct: 83 RKTS-RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERS 141
Query: 534 QLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVH 578
+L+RN +++TTPE ++ + +L V+ +IIDEVH
Sbjct: 142 KLTRN---PPDILITTPESLYLMLTSRARETLRG-VETVIIDEVH 182
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 422 LIEIKELDEF-AQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILH 480
+ E+ ELD F A+ F SL+ Q R + +LVCAPTGAGKT + ++
Sbjct: 1 MTELAELDRFTAELPF----SLDDFQQRACSALE-RGHGVLVCAPTGAGKTVVGEFAVHL 55
Query: 481 EIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNEL 540
+ K Y P+KAL+ + ++R + + LTGD+ ++ N
Sbjct: 56 ALAAG----------SKCFYTTPLKALSNQKHTDLTARYGRDQIGL--LTGDLSVNGN-- 101
Query: 541 EETQMIVTTPEKWDVITRKS--SDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALV 592
++V T E + R +D + +++DEVH L D RGPV E ++
Sbjct: 102 --APVVVMTTE----VLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVI 150
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 40/211 (18%)
Query: 387 AVTALPQGTVRKHLK-GYEEVIIPPTPT---AQMKPGEKLIEIKELDEFAQAAFHGYKSL 442
++ +LP T+ H + Y V+ P Q+ P L ELD F + A + +
Sbjct: 236 SIVSLPPSTLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLE-- 293
Query: 443 NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA 502
+++ V A T AGKT +A +I K K +Y +
Sbjct: 294 -------------MGDSVFVAAHTSAGKTVVAEYAI----------ALAQKHMTKAIYTS 330
Query: 503 PMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSD 562
P+KAL+ + R F + + + LTGD+Q++ E ++ T E + + +D
Sbjct: 331 PIKALSNQKFRDFKHKFEDVGI----LTGDVQVN----PEGSCLLMTTEILRSMLYRGAD 382
Query: 563 MSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592
+ V+ +I DEVH +ND +RG V E ++
Sbjct: 383 LIRD--VEFVIFDEVHYVNDLERGVVWEEVI 411
>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp.
japonica GN=Os07g0647900 PE=2 SV=2
Length = 540
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFK 497
G++ IQ + + + CAPTG+GKT + IL +I ++G K
Sbjct: 165 GFQEPTPIQRQAI-PILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGV------K 217
Query: 498 IVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELE-ETQMIVTTPEKWDVI 556
V + P + LAA+ TR ++ +T D+ S N + ++++TP + D
Sbjct: 218 AVILCPTRELAAQTTRECKKLAKGRKFYIKLMTKDLSKSGNFKDMHCDILISTPLRLDHA 277
Query: 557 TRKSSDMSLSMLVKLLIIDE 576
+K D+ LS V+ L++DE
Sbjct: 278 VQK-RDLDLSR-VEYLVLDE 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,880,649
Number of Sequences: 539616
Number of extensions: 8862334
Number of successful extensions: 30806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 30517
Number of HSP's gapped (non-prelim): 420
length of query: 601
length of database: 191,569,459
effective HSP length: 123
effective length of query: 478
effective length of database: 125,196,691
effective search space: 59844018298
effective search space used: 59844018298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)