Query 007492
Match_columns 601
No_of_seqs 395 out of 2072
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 11:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 4E-60 8.7E-65 531.2 17.2 370 220-601 87-470 (1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 3.8E-47 8.3E-52 423.4 13.3 214 387-601 57-271 (1230)
3 COG1204 Superfamily II helicas 100.0 1.6E-28 3.6E-33 281.1 13.7 147 441-600 32-179 (766)
4 KOG0330 ATP-dependent RNA heli 99.9 4.4E-26 9.5E-31 233.3 11.6 158 429-597 70-234 (476)
5 PRK02362 ski2-like helicase; P 99.9 2E-25 4.3E-30 259.1 17.9 157 428-597 8-167 (737)
6 KOG0345 ATP-dependent RNA heli 99.9 1.2E-24 2.6E-29 227.2 14.9 168 428-599 13-189 (567)
7 PRK04837 ATP-dependent RNA hel 99.9 2.4E-24 5.1E-29 235.1 17.7 165 428-596 15-186 (423)
8 KOG0331 ATP-dependent RNA heli 99.9 1.6E-24 3.4E-29 234.4 14.1 156 437-597 109-269 (519)
9 PRK00254 ski2-like helicase; P 99.9 4.2E-24 9E-29 247.5 17.4 158 428-597 8-168 (720)
10 PLN00206 DEAD-box ATP-dependen 99.9 8.2E-24 1.8E-28 236.2 17.5 164 428-595 128-298 (518)
11 PTZ00110 helicase; Provisional 99.9 2E-23 4.3E-28 234.2 16.9 162 428-595 137-305 (545)
12 PRK04537 ATP-dependent RNA hel 99.9 2.1E-23 4.6E-28 234.9 17.2 158 437-597 27-189 (572)
13 PRK10590 ATP-dependent RNA hel 99.9 3E-23 6.5E-28 228.5 17.5 155 437-596 19-178 (456)
14 PRK11776 ATP-dependent RNA hel 99.9 2.8E-23 6.1E-28 229.1 16.7 150 437-597 22-177 (460)
15 PRK11192 ATP-dependent RNA hel 99.9 4.5E-23 9.8E-28 225.7 17.8 161 429-596 9-176 (434)
16 COG0513 SrmB Superfamily II DN 99.9 4.7E-23 1E-27 229.3 16.3 152 437-597 47-204 (513)
17 TIGR03817 DECH_helic helicase/ 99.9 6.4E-23 1.4E-27 236.9 17.8 152 437-598 32-187 (742)
18 PRK01297 ATP-dependent RNA hel 99.9 8.6E-23 1.9E-27 226.1 17.4 165 428-596 94-266 (475)
19 KOG0338 ATP-dependent RNA heli 99.9 1.7E-23 3.6E-28 220.1 10.7 156 437-598 199-358 (691)
20 COG1201 Lhr Lhr-like helicases 99.9 4.8E-23 1E-27 234.0 13.6 170 425-597 5-179 (814)
21 PRK01172 ski2-like helicase; P 99.9 1.9E-22 4.1E-27 232.3 17.2 154 428-596 8-164 (674)
22 KOG0348 ATP-dependent RNA heli 99.9 1.5E-22 3.3E-27 214.0 13.1 155 437-595 155-315 (708)
23 PRK11634 ATP-dependent RNA hel 99.9 4.1E-22 8.9E-27 226.2 16.8 150 437-597 24-179 (629)
24 PRK13767 ATP-dependent helicas 99.9 4.1E-22 8.9E-27 234.3 16.9 170 427-598 17-203 (876)
25 KOG0335 ATP-dependent RNA heli 99.9 1.4E-22 3E-27 216.2 10.8 155 437-595 92-255 (482)
26 PTZ00424 helicase 45; Provisio 99.9 2E-21 4.4E-26 210.2 16.6 148 437-595 46-198 (401)
27 KOG0342 ATP-dependent RNA heli 99.9 5.7E-22 1.2E-26 208.5 11.3 164 430-599 91-262 (543)
28 KOG0343 RNA Helicase [RNA proc 99.9 3.6E-22 7.8E-27 211.7 9.4 157 437-598 87-246 (758)
29 cd00268 DEADc DEAD-box helicas 99.9 5.7E-21 1.2E-25 187.2 17.0 152 437-596 17-172 (203)
30 KOG0340 ATP-dependent RNA heli 99.9 1.4E-21 2.9E-26 198.4 10.8 161 428-596 14-182 (442)
31 PF00270 DEAD: DEAD/DEAH box h 99.8 7.8E-21 1.7E-25 180.0 13.8 143 443-596 1-148 (169)
32 KOG0350 DEAD-box ATP-dependent 99.8 1.2E-21 2.6E-26 206.0 8.9 137 437-582 155-309 (620)
33 KOG0347 RNA helicase [RNA proc 99.8 1.3E-21 2.9E-26 207.4 8.3 161 436-596 198-369 (731)
34 KOG0339 ATP-dependent RNA heli 99.8 6E-21 1.3E-25 200.7 12.5 152 438-595 242-398 (731)
35 KOG0326 ATP-dependent RNA heli 99.8 1.1E-21 2.4E-26 196.3 6.7 159 429-598 94-258 (459)
36 COG1205 Distinct helicase fami 99.8 4.4E-20 9.4E-25 214.7 16.9 155 437-600 66-227 (851)
37 KOG0346 RNA helicase [RNA proc 99.8 1.7E-20 3.7E-25 194.8 10.1 158 437-598 37-201 (569)
38 PLN03137 ATP-dependent DNA hel 99.8 8.4E-19 1.8E-23 203.6 23.5 152 421-591 441-607 (1195)
39 KOG0333 U5 snRNP-like RNA heli 99.8 6.4E-20 1.4E-24 193.9 12.6 156 437-596 263-425 (673)
40 COG1202 Superfamily II helicas 99.8 1.4E-19 3.1E-24 192.9 13.7 202 373-597 157-368 (830)
41 KOG0334 RNA helicase [RNA proc 99.8 1.7E-19 3.7E-24 204.7 9.8 156 437-595 383-543 (997)
42 KOG0336 ATP-dependent RNA heli 99.8 8.9E-19 1.9E-23 180.4 8.5 161 427-593 227-393 (629)
43 TIGR00614 recQ_fam ATP-depende 99.8 2.7E-18 5.9E-23 189.9 12.8 140 433-591 4-153 (470)
44 KOG0328 Predicted ATP-dependen 99.8 7.6E-19 1.7E-23 173.6 7.3 157 429-596 36-198 (400)
45 PRK09751 putative ATP-dependen 99.7 6.9E-18 1.5E-22 203.1 12.6 136 462-599 1-156 (1490)
46 KOG0329 ATP-dependent RNA heli 99.7 4E-18 8.8E-23 166.4 8.5 159 429-598 51-217 (387)
47 PRK09401 reverse gyrase; Revie 99.7 3.3E-17 7.2E-22 196.2 17.8 139 427-582 68-215 (1176)
48 KOG0341 DEAD-box protein abstr 99.7 6.5E-19 1.4E-23 180.2 2.2 158 437-598 188-357 (610)
49 TIGR01389 recQ ATP-dependent D 99.7 3.6E-17 7.8E-22 186.0 16.0 138 431-591 4-153 (591)
50 TIGR00580 mfd transcription-re 99.7 6E-17 1.3E-21 189.8 17.1 126 438-581 449-586 (926)
51 COG4581 Superfamily II RNA hel 99.7 2.4E-17 5.2E-22 190.4 12.9 143 438-599 117-261 (1041)
52 TIGR00643 recG ATP-dependent D 99.7 3.8E-17 8.1E-22 186.7 14.2 128 437-582 232-371 (630)
53 KOG4284 DEAD box protein [Tran 99.7 6.6E-18 1.4E-22 182.0 7.3 150 437-597 43-198 (980)
54 KOG0337 ATP-dependent RNA heli 99.7 7.5E-18 1.6E-22 174.5 6.9 151 437-597 39-194 (529)
55 PRK10917 ATP-dependent DNA hel 99.7 3.3E-17 7.2E-22 188.5 13.0 127 438-582 259-397 (681)
56 PRK11057 ATP-dependent DNA hel 99.7 1.3E-16 2.9E-21 181.5 15.8 139 430-591 15-165 (607)
57 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.3E-16 2.8E-21 182.8 14.9 154 428-595 4-197 (844)
58 PRK14701 reverse gyrase; Provi 99.7 2.5E-16 5.5E-21 192.5 16.9 139 426-582 66-214 (1638)
59 KOG0344 ATP-dependent RNA heli 99.7 1.2E-16 2.6E-21 172.1 12.0 153 437-593 154-315 (593)
60 TIGR03158 cas3_cyano CRISPR-as 99.7 1.7E-16 3.6E-21 169.6 13.0 127 445-584 1-161 (357)
61 TIGR01054 rgy reverse gyrase. 99.7 2.5E-16 5.4E-21 188.9 15.1 127 440-582 77-213 (1171)
62 PRK12899 secA preprotein trans 99.7 2E-16 4.4E-21 180.7 13.5 135 437-582 85-229 (970)
63 KOG0952 DNA/RNA helicase MER3/ 99.7 4.8E-18 1E-22 191.6 -0.4 151 439-597 925-1075(1230)
64 PHA02558 uvsW UvsW helicase; P 99.7 6.8E-16 1.5E-20 172.0 15.9 183 390-595 60-246 (501)
65 PRK10689 transcription-repair 99.7 5E-16 1.1E-20 185.7 15.7 126 438-581 598-735 (1147)
66 KOG0327 Translation initiation 99.7 8.8E-17 1.9E-21 165.7 7.6 158 431-599 37-201 (397)
67 KOG0951 RNA helicase BRR2, DEA 99.7 3.4E-17 7.3E-22 186.7 4.1 136 440-593 1142-1278(1674)
68 KOG0947 Cytoplasmic exosomal R 99.6 5.4E-16 1.2E-20 173.5 9.8 138 441-599 297-435 (1248)
69 KOG0332 ATP-dependent RNA heli 99.6 1.2E-15 2.7E-20 156.2 9.4 147 429-585 99-249 (477)
70 COG1111 MPH1 ERCC4-like helica 99.6 6.2E-15 1.3E-19 157.0 13.5 144 438-597 12-158 (542)
71 KOG0354 DEAD-box like helicase 99.6 1.1E-14 2.5E-19 162.7 13.5 132 437-582 58-193 (746)
72 smart00487 DEXDc DEAD-like hel 99.6 3.1E-14 6.7E-19 136.2 14.8 148 438-595 5-157 (201)
73 PRK13766 Hef nuclease; Provisi 99.5 4.5E-14 9.8E-19 165.6 16.0 131 439-583 13-146 (773)
74 KOG0948 Nuclear exosomal RNA h 99.5 6.5E-15 1.4E-19 161.4 5.6 135 441-597 129-265 (1041)
75 PRK12898 secA preprotein trans 99.5 9.1E-14 2E-18 156.3 12.3 130 438-581 101-255 (656)
76 TIGR01587 cas3_core CRISPR-ass 99.5 6.2E-14 1.3E-18 149.7 10.1 127 459-596 1-152 (358)
77 TIGR00963 secA preprotein tran 99.5 1.1E-13 2.3E-18 156.7 11.3 129 438-582 54-190 (745)
78 PRK09200 preprotein translocas 99.5 1.3E-13 2.8E-18 158.1 12.1 130 438-581 76-212 (790)
79 PRK05580 primosome assembly pr 99.5 2.5E-13 5.3E-18 156.3 14.0 119 441-581 144-271 (679)
80 TIGR03714 secA2 accessory Sec 99.5 1.5E-13 3.3E-18 156.4 12.1 128 441-582 70-209 (762)
81 PHA02653 RNA helicase NPH-II; 99.4 1.4E-12 3E-17 148.6 14.4 139 443-596 166-318 (675)
82 cd00046 DEXDc DEAD-like helica 99.4 2.3E-12 5E-17 116.1 12.2 115 458-583 1-118 (144)
83 TIGR01970 DEAH_box_HrpB ATP-de 99.4 8.7E-12 1.9E-16 145.2 16.2 116 454-586 14-133 (819)
84 PRK11664 ATP-dependent RNA hel 99.3 4.9E-12 1.1E-16 147.5 13.4 110 454-579 17-127 (812)
85 PRK13104 secA preprotein trans 99.3 3.4E-12 7.4E-17 146.6 11.6 128 441-581 82-215 (896)
86 TIGR00603 rad25 DNA repair hel 99.3 7.5E-12 1.6E-16 142.5 14.2 136 440-593 254-397 (732)
87 PF04851 ResIII: Type III rest 99.3 5.5E-12 1.2E-16 120.4 11.0 128 441-582 3-160 (184)
88 COG1061 SSL2 DNA or RNA helica 99.3 6.7E-12 1.5E-16 137.8 12.9 126 440-585 35-163 (442)
89 COG0514 RecQ Superfamily II DN 99.3 7E-12 1.5E-16 138.9 11.2 140 430-592 7-158 (590)
90 KOG0352 ATP-dependent DNA heli 99.2 2.2E-11 4.8E-16 126.9 9.1 139 429-588 8-164 (641)
91 PRK09694 helicase Cas3; Provis 99.2 4.3E-11 9.4E-16 139.7 12.6 147 439-594 284-465 (878)
92 KOG0949 Predicted helicase, DE 99.2 2.6E-11 5.7E-16 136.7 9.5 144 441-593 511-658 (1330)
93 TIGR00595 priA primosomal prot 99.2 4.5E-11 9.7E-16 133.2 10.7 99 461-581 1-106 (505)
94 COG1200 RecG RecG-like helicas 99.2 6.1E-11 1.3E-15 131.5 10.7 124 441-581 262-397 (677)
95 PRK11448 hsdR type I restricti 99.2 8.5E-11 1.8E-15 140.8 12.5 133 440-580 412-552 (1123)
96 KOG0950 DNA polymerase theta/e 99.2 8.7E-11 1.9E-15 133.2 9.9 146 437-596 219-370 (1008)
97 KOG0349 Putative DEAD-box RNA 99.2 2.5E-11 5.4E-16 126.6 4.8 100 494-599 285-391 (725)
98 PRK12904 preprotein translocas 99.1 1.2E-10 2.6E-15 133.8 10.6 129 438-581 79-214 (830)
99 PRK07246 bifunctional ATP-depe 99.1 7.1E-10 1.5E-14 130.1 14.0 86 435-532 240-329 (820)
100 TIGR03117 cas_csf4 CRISPR-asso 99.1 9.9E-10 2.2E-14 124.1 13.5 71 453-531 12-85 (636)
101 COG1110 Reverse gyrase [DNA re 99.0 2.2E-09 4.7E-14 122.7 14.4 141 425-582 68-217 (1187)
102 TIGR01407 dinG_rel DnaQ family 99.0 1.9E-09 4.2E-14 127.6 14.7 85 437-532 242-332 (850)
103 PRK13107 preprotein translocas 99.0 4.8E-10 1E-14 128.9 9.2 129 441-582 82-216 (908)
104 COG1197 Mfd Transcription-repa 99.0 2.1E-09 4.5E-14 125.5 14.3 125 441-582 594-730 (1139)
105 KOG0353 ATP-dependent DNA heli 99.0 1E-09 2.2E-14 113.0 9.0 145 424-590 78-240 (695)
106 KOG0351 ATP-dependent DNA heli 99.0 5.6E-10 1.2E-14 130.5 7.5 144 430-592 254-412 (941)
107 smart00488 DEXDc2 DEAD-like he 99.0 6.1E-09 1.3E-13 108.2 12.9 74 441-518 8-84 (289)
108 smart00489 DEXDc3 DEAD-like he 99.0 6.1E-09 1.3E-13 108.2 12.9 74 441-518 8-84 (289)
109 TIGR00348 hsdR type I site-spe 98.9 9.2E-09 2E-13 118.6 11.9 128 442-581 239-378 (667)
110 PRK08074 bifunctional ATP-depe 98.9 3.1E-08 6.7E-13 118.2 15.6 88 433-531 250-344 (928)
111 COG1198 PriA Primosomal protei 98.8 1.1E-08 2.3E-13 116.9 10.5 120 439-580 196-325 (730)
112 PRK13103 secA preprotein trans 98.7 3.2E-08 6.8E-13 114.2 10.4 128 441-581 82-215 (913)
113 COG4096 HsdR Type I site-speci 98.7 5.3E-08 1.1E-12 110.0 11.6 127 439-579 163-296 (875)
114 PRK11131 ATP-dependent RNA hel 98.7 1.3E-07 2.7E-12 113.7 13.2 112 450-582 82-201 (1294)
115 PRK12906 secA preprotein trans 98.7 4.3E-08 9.3E-13 112.6 8.9 130 438-581 78-213 (796)
116 PF00176 SNF2_N: SNF2 family N 98.7 1.6E-07 3.4E-12 97.1 11.6 128 456-590 24-156 (299)
117 COG4098 comFA Superfamily II D 98.6 3.4E-07 7.4E-12 94.1 12.2 129 441-594 97-228 (441)
118 COG1203 CRISPR-associated heli 98.6 1.9E-07 4.1E-12 108.9 11.3 146 441-593 195-364 (733)
119 TIGR01967 DEAH_box_HrpA ATP-de 98.6 4.2E-07 9E-12 109.6 12.7 117 450-582 75-194 (1283)
120 PRK12326 preprotein translocas 98.5 2.2E-07 4.8E-12 105.1 9.5 130 438-581 76-211 (764)
121 PRK11747 dinG ATP-dependent DN 98.5 9.7E-07 2.1E-11 102.4 14.4 70 434-513 19-96 (697)
122 TIGR00604 rad3 DNA repair heli 98.5 5.8E-07 1.2E-11 104.7 11.4 74 438-518 7-83 (705)
123 PF07652 Flavi_DEAD: Flaviviru 98.4 1.1E-06 2.4E-11 81.0 9.3 105 456-581 3-108 (148)
124 PF13086 AAA_11: AAA domain; P 98.4 1.9E-06 4.1E-11 85.2 11.6 74 441-517 1-75 (236)
125 PF07517 SecA_DEAD: SecA DEAD- 98.4 1.6E-06 3.4E-11 88.7 10.8 128 441-581 77-210 (266)
126 PRK04914 ATP-dependent helicas 98.3 3.6E-06 7.7E-11 99.7 11.2 125 441-581 152-285 (956)
127 PLN03142 Probable chromatin-re 98.2 9E-06 2E-10 96.8 13.8 128 441-582 169-305 (1033)
128 KOG1802 RNA helicase nonsense 98.2 8.9E-06 1.9E-10 89.8 10.2 81 437-531 406-486 (935)
129 PRK12902 secA preprotein trans 98.1 9.6E-06 2.1E-10 93.6 10.4 130 438-581 83-218 (939)
130 PRK14873 primosome assembly pr 98.1 6.4E-06 1.4E-10 94.5 9.0 96 464-580 167-269 (665)
131 COG4889 Predicted helicase [Ge 98.1 1.4E-05 2.9E-10 90.6 11.2 128 438-581 158-317 (1518)
132 CHL00122 secA preprotein trans 98.1 4.6E-06 1E-10 96.3 7.3 129 438-581 74-209 (870)
133 KOG1123 RNA polymerase II tran 98.1 3.7E-06 8E-11 90.1 5.0 139 438-591 299-446 (776)
134 COG1643 HrpA HrpA-like helicas 98.0 2E-05 4.4E-10 91.8 10.6 112 452-579 60-173 (845)
135 PRK15483 type III restriction- 98.0 7.8E-05 1.7E-09 87.6 13.7 125 458-591 60-223 (986)
136 PF13604 AAA_30: AAA domain; P 97.9 9.7E-05 2.1E-09 72.5 11.3 64 441-514 1-65 (196)
137 KOG1803 DNA helicase [Replicat 97.9 2.4E-05 5.3E-10 86.1 7.6 67 440-516 184-250 (649)
138 PF12340 DUF3638: Protein of u 97.7 0.00015 3.2E-09 72.3 9.4 146 427-582 9-186 (229)
139 PF13245 AAA_19: Part of AAA d 97.7 0.00015 3.2E-09 60.1 7.8 61 449-515 2-62 (76)
140 COG1199 DinG Rad3-related DNA 97.7 0.00013 2.8E-09 84.4 9.3 73 435-517 10-85 (654)
141 KOG0385 Chromatin remodeling c 97.6 0.00022 4.7E-09 80.4 9.9 126 441-582 167-303 (971)
142 PF02562 PhoH: PhoH-like prote 97.6 2.6E-05 5.7E-10 76.8 2.5 59 440-507 3-61 (205)
143 PRK12903 secA preprotein trans 97.6 0.00022 4.7E-09 82.5 9.1 129 438-581 76-211 (925)
144 KOG0953 Mitochondrial RNA heli 97.6 0.00011 2.4E-09 80.1 6.1 103 460-590 194-298 (700)
145 COG0610 Type I site-specific r 97.6 0.00023 5E-09 85.3 9.4 116 457-582 273-390 (962)
146 KOG4439 RNA polymerase II tran 97.5 0.00017 3.6E-09 80.6 7.0 140 441-583 325-478 (901)
147 PRK10536 hypothetical protein; 97.5 0.00018 3.9E-09 73.0 6.4 62 437-507 55-116 (262)
148 PF09848 DUF2075: Uncharacteri 97.5 0.00032 6.9E-09 75.1 8.5 94 459-582 3-97 (352)
149 PF00580 UvrD-helicase: UvrD/R 97.5 0.00029 6.3E-09 73.1 7.7 70 442-520 1-70 (315)
150 TIGR00376 DNA helicase, putati 97.4 0.00074 1.6E-08 77.8 10.2 79 440-532 156-234 (637)
151 KOG1132 Helicase of the DEAD s 97.3 0.001 2.3E-08 76.2 10.8 138 441-582 21-261 (945)
152 KOG0387 Transcription-coupled 97.2 0.0021 4.6E-08 73.0 11.2 129 439-583 203-352 (923)
153 KOG0920 ATP-dependent RNA heli 97.2 0.0036 7.8E-08 73.4 13.2 123 444-581 176-300 (924)
154 PF02399 Herpes_ori_bp: Origin 97.2 0.0022 4.7E-08 73.9 11.2 107 457-581 49-155 (824)
155 PRK10875 recD exonuclease V su 97.2 0.0038 8.3E-08 71.4 12.9 87 427-522 138-226 (615)
156 KOG1002 Nucleotide excision re 97.2 0.0032 6.9E-08 68.1 11.3 111 460-583 207-331 (791)
157 KOG2340 Uncharacterized conser 97.1 0.0016 3.5E-08 70.9 8.8 149 440-592 215-436 (698)
158 TIGR01447 recD exodeoxyribonuc 97.1 0.0064 1.4E-07 69.4 13.5 129 444-595 148-283 (586)
159 KOG0922 DEAH-box RNA helicase 97.1 0.0035 7.5E-08 70.3 10.8 110 454-579 63-174 (674)
160 KOG0390 DNA repair protein, SN 97.0 0.0063 1.4E-07 70.3 12.8 143 440-590 237-398 (776)
161 PF05970 PIF1: PIF1-like helic 97.0 0.0012 2.7E-08 71.0 6.6 61 441-511 1-66 (364)
162 KOG1000 Chromatin remodeling p 97.0 0.007 1.5E-07 65.6 12.0 129 439-584 196-324 (689)
163 TIGR02562 cas3_yersinia CRISPR 96.9 0.0047 1E-07 73.1 10.9 84 441-532 408-498 (1110)
164 KOG4150 Predicted ATP-dependen 96.9 0.00089 1.9E-08 73.2 4.1 161 430-599 273-443 (1034)
165 COG3587 Restriction endonuclea 96.9 0.0036 7.9E-08 71.7 8.9 46 456-509 73-118 (985)
166 PRK12900 secA preprotein trans 96.8 0.0014 3E-08 77.0 5.5 128 441-581 138-271 (1025)
167 TIGR02768 TraA_Ti Ti-type conj 96.8 0.016 3.5E-07 68.1 14.4 62 441-512 352-413 (744)
168 KOG0926 DEAH-box RNA helicase 96.7 0.006 1.3E-07 69.4 9.4 133 448-596 263-399 (1172)
169 TIGR01448 recD_rel helicase, p 96.7 0.0093 2E-07 69.8 11.4 65 440-513 322-386 (720)
170 PRK10919 ATP-dependent DNA hel 96.7 0.0032 6.9E-08 73.2 7.1 71 441-520 2-72 (672)
171 PRK11054 helD DNA helicase IV; 96.7 0.0053 1.2E-07 71.2 8.9 82 440-530 195-276 (684)
172 PF13401 AAA_22: AAA domain; P 96.6 0.0027 5.8E-08 57.2 4.7 23 456-478 3-25 (131)
173 cd00009 AAA The AAA+ (ATPases 96.6 0.01 2.2E-07 53.3 8.2 20 457-476 19-38 (151)
174 smart00382 AAA ATPases associa 96.4 0.0043 9.3E-08 55.1 4.9 44 457-510 2-45 (148)
175 PRK13889 conjugal transfer rel 96.4 0.025 5.5E-07 67.8 12.5 61 441-511 346-406 (988)
176 PRK12901 secA preprotein trans 96.4 0.0033 7.2E-08 74.1 4.9 128 441-581 169-303 (1112)
177 TIGR02785 addA_Gpos recombinat 96.3 0.0091 2E-07 74.0 7.9 136 442-594 2-140 (1232)
178 TIGR01074 rep ATP-dependent DN 96.2 0.0097 2.1E-07 69.2 7.6 71 441-520 1-71 (664)
179 PRK13826 Dtr system oriT relax 96.2 0.062 1.3E-06 65.1 14.4 63 440-512 380-442 (1102)
180 TIGR01075 uvrD DNA helicase II 96.2 0.011 2.3E-07 69.4 8.0 72 440-520 3-74 (715)
181 COG0556 UvrB Helicase subunit 96.2 0.016 3.4E-07 63.7 8.5 69 442-523 13-85 (663)
182 KOG0924 mRNA splicing factor A 96.2 0.028 6.1E-07 63.2 10.2 121 443-579 358-479 (1042)
183 PRK11773 uvrD DNA-dependent he 96.1 0.013 2.8E-07 68.9 8.1 72 440-520 8-79 (721)
184 PRK06526 transposase; Provisio 96.1 0.025 5.3E-07 57.9 9.0 46 455-511 96-141 (254)
185 cd01120 RecA-like_NTPases RecA 96.1 0.045 9.7E-07 50.5 9.9 40 460-509 2-41 (165)
186 PRK04296 thymidine kinase; Pro 96.0 0.018 3.9E-07 56.1 7.4 35 459-503 4-38 (190)
187 PRK13894 conjugal transfer ATP 96.0 0.016 3.4E-07 61.3 7.2 41 441-482 132-172 (319)
188 KOG1805 DNA replication helica 95.9 0.035 7.6E-07 64.7 9.9 123 439-582 667-810 (1100)
189 TIGR01547 phage_term_2 phage t 95.9 0.037 8.1E-07 60.1 9.7 120 459-595 3-125 (396)
190 COG1875 NYN ribonuclease and A 95.8 0.038 8.2E-07 58.4 8.9 65 438-509 225-290 (436)
191 PF13872 AAA_34: P-loop contai 95.8 0.055 1.2E-06 56.2 9.7 131 441-582 37-186 (303)
192 KOG0389 SNF2 family DNA-depend 95.6 0.054 1.2E-06 62.0 9.6 135 441-589 399-545 (941)
193 TIGR01073 pcrA ATP-dependent D 95.5 0.033 7.1E-07 65.5 8.1 72 440-520 3-74 (726)
194 KOG0923 mRNA splicing factor A 95.5 0.046 1E-06 61.4 8.6 119 445-579 269-389 (902)
195 cd01124 KaiC KaiC is a circadi 95.5 0.018 3.9E-07 55.2 4.9 48 460-518 2-49 (187)
196 PRK13833 conjugal transfer pro 95.5 0.037 7.9E-07 58.5 7.5 41 441-482 128-168 (323)
197 TIGR02782 TrbB_P P-type conjug 95.4 0.044 9.5E-07 57.4 7.8 42 441-483 116-157 (299)
198 PF05876 Terminase_GpA: Phage 95.3 0.015 3.2E-07 66.1 4.0 139 441-596 16-165 (557)
199 KOG0989 Replication factor C, 95.2 0.038 8.2E-07 57.2 6.3 26 457-482 57-82 (346)
200 COG1474 CDC6 Cdc6-related prot 95.2 0.057 1.2E-06 58.1 8.1 27 457-484 42-68 (366)
201 PRK08903 DnaA regulatory inact 95.1 0.15 3.3E-06 50.7 10.2 21 456-476 41-61 (227)
202 KOG1131 RNA polymerase II tran 95.1 0.2 4.3E-06 55.1 11.4 71 438-514 13-86 (755)
203 KOG0925 mRNA splicing factor A 95.0 0.054 1.2E-06 58.9 6.9 115 445-579 50-170 (699)
204 PTZ00112 origin recognition co 95.0 0.16 3.5E-06 59.6 11.0 43 459-504 782-825 (1164)
205 COG3973 Superfamily I DNA and 94.9 0.081 1.8E-06 59.2 8.0 69 441-515 212-280 (747)
206 PRK08181 transposase; Validate 94.9 0.24 5.2E-06 51.1 11.1 48 454-512 103-150 (269)
207 COG0653 SecA Preprotein transl 94.8 0.076 1.6E-06 61.9 8.0 127 441-581 80-213 (822)
208 PF05621 TniB: Bacterial TniB 94.8 0.13 2.9E-06 53.4 9.1 57 458-519 62-120 (302)
209 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.13 2.8E-06 50.9 8.7 23 456-478 37-59 (226)
210 COG4962 CpaF Flp pilus assembl 94.7 0.093 2E-06 55.3 7.7 37 437-473 153-189 (355)
211 PRK08727 hypothetical protein; 94.7 0.21 4.6E-06 50.3 10.0 35 458-502 42-76 (233)
212 PHA02533 17 large terminase pr 94.7 0.43 9.4E-06 54.0 13.4 71 441-520 59-129 (534)
213 PRK00411 cdc6 cell division co 94.7 0.13 2.9E-06 55.6 9.1 38 457-502 55-92 (394)
214 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.15 3.2E-06 51.5 8.5 51 456-517 20-70 (237)
215 TIGR02928 orc1/cdc6 family rep 94.5 0.15 3.2E-06 54.6 8.9 25 457-482 40-64 (365)
216 cd01122 GP4d_helicase GP4d_hel 94.5 0.11 2.4E-06 53.2 7.6 54 455-518 28-81 (271)
217 PF01695 IstB_IS21: IstB-like 94.4 0.078 1.7E-06 51.2 6.0 48 454-512 44-91 (178)
218 PRK14964 DNA polymerase III su 94.4 0.29 6.4E-06 54.6 11.2 21 458-478 36-56 (491)
219 PF05127 Helicase_RecD: Helica 94.4 0.013 2.8E-07 56.5 0.4 111 461-592 1-111 (177)
220 PRK14087 dnaA chromosomal repl 94.3 0.35 7.7E-06 53.6 11.5 50 458-516 142-191 (450)
221 PRK06645 DNA polymerase III su 94.2 0.21 4.5E-06 56.1 9.5 21 458-478 44-64 (507)
222 PRK12723 flagellar biosynthesi 94.2 0.26 5.7E-06 53.5 9.9 61 457-526 174-236 (388)
223 PRK13851 type IV secretion sys 94.1 0.071 1.5E-06 56.9 5.4 36 446-482 151-186 (344)
224 TIGR02881 spore_V_K stage V sp 94.1 0.19 4.2E-06 51.3 8.5 21 457-477 42-62 (261)
225 TIGR03015 pepcterm_ATPase puta 94.1 0.15 3.3E-06 51.8 7.8 35 442-476 24-62 (269)
226 TIGR00631 uvrb excinuclease AB 94.1 0.15 3.3E-06 59.1 8.5 68 441-521 9-80 (655)
227 KOG0392 SNF2 family DNA-depend 94.1 0.15 3.2E-06 61.0 8.2 131 441-583 975-1115(1549)
228 PRK05298 excinuclease ABC subu 94.0 0.31 6.6E-06 56.7 10.8 68 441-521 12-83 (652)
229 COG3421 Uncharacterized protei 94.0 0.18 4E-06 56.3 8.3 127 462-597 2-151 (812)
230 PRK14956 DNA polymerase III su 93.9 0.13 2.8E-06 57.1 6.9 20 459-478 42-61 (484)
231 PRK14960 DNA polymerase III su 93.9 0.33 7.1E-06 55.8 10.2 30 449-478 26-58 (702)
232 PHA03333 putative ATPase subun 93.8 0.75 1.6E-05 52.9 12.8 57 457-522 187-243 (752)
233 PRK05563 DNA polymerase III su 93.7 0.31 6.8E-06 55.5 9.9 22 458-479 39-60 (559)
234 cd01130 VirB11-like_ATPase Typ 93.7 0.089 1.9E-06 51.0 4.8 35 440-474 8-42 (186)
235 PRK00149 dnaA chromosomal repl 93.7 0.47 1E-05 52.6 11.1 49 458-515 149-197 (450)
236 TIGR00362 DnaA chromosomal rep 93.7 0.43 9.4E-06 52.1 10.7 46 458-512 137-182 (405)
237 KOG0391 SNF2 family DNA-depend 93.7 0.19 4.2E-06 59.7 8.1 135 441-593 615-762 (1958)
238 COG1484 DnaC DNA replication p 93.7 0.22 4.9E-06 50.9 7.9 52 454-516 102-153 (254)
239 PF05496 RuvB_N: Holliday junc 93.6 0.29 6.3E-06 49.0 8.2 19 458-476 51-69 (233)
240 PRK08691 DNA polymerase III su 93.6 0.35 7.6E-06 55.9 10.0 21 458-478 39-59 (709)
241 PRK07003 DNA polymerase III su 93.6 0.38 8.3E-06 56.0 10.3 18 459-476 40-57 (830)
242 KOG0384 Chromodomain-helicase 93.6 0.19 4.1E-06 60.2 7.9 131 440-590 369-519 (1373)
243 PRK07994 DNA polymerase III su 93.5 0.38 8.2E-06 55.5 10.1 29 450-478 28-59 (647)
244 PRK11823 DNA repair protein Ra 93.5 0.47 1E-05 52.6 10.5 92 456-582 79-170 (446)
245 COG0553 HepA Superfamily II DN 93.5 0.24 5.2E-06 59.0 8.9 132 440-583 337-487 (866)
246 PRK14958 DNA polymerase III su 93.4 0.46 9.9E-06 53.6 10.3 20 459-478 40-59 (509)
247 PRK12402 replication factor C 93.3 0.41 8.9E-06 50.4 9.4 32 446-477 23-56 (337)
248 PF00437 T2SE: Type II/IV secr 93.2 0.12 2.7E-06 52.9 5.2 54 444-507 114-167 (270)
249 COG2804 PulE Type II secretory 93.2 0.18 3.9E-06 55.7 6.6 42 442-484 242-284 (500)
250 PF03354 Terminase_1: Phage Te 93.2 0.15 3.2E-06 57.0 6.1 72 444-521 1-80 (477)
251 COG2805 PilT Tfp pilus assembl 93.1 0.067 1.4E-06 55.3 2.8 54 457-511 125-178 (353)
252 TIGR02760 TraI_TIGR conjugativ 93.1 0.91 2E-05 59.0 13.5 64 441-514 429-493 (1960)
253 cd01121 Sms Sms (bacterial rad 93.0 0.66 1.4E-05 50.1 10.6 50 456-516 81-130 (372)
254 PRK14722 flhF flagellar biosyn 93.0 0.17 3.7E-06 54.5 6.0 88 454-552 134-226 (374)
255 PRK05703 flhF flagellar biosyn 92.9 0.24 5.1E-06 54.5 7.1 55 456-518 220-276 (424)
256 TIGR02012 tigrfam_recA protein 92.9 0.17 3.8E-06 53.4 5.8 45 456-510 54-98 (321)
257 COG0630 VirB11 Type IV secreto 92.8 0.23 5E-06 52.3 6.6 45 438-483 124-168 (312)
258 COG0470 HolB ATPase involved i 92.8 0.51 1.1E-05 49.3 9.2 26 457-483 23-49 (325)
259 PRK14962 DNA polymerase III su 92.8 0.48 1E-05 52.9 9.4 19 459-477 38-56 (472)
260 PRK14088 dnaA chromosomal repl 92.8 0.73 1.6E-05 51.0 10.7 47 458-513 131-177 (440)
261 KOG0388 SNF2 family DNA-depend 92.8 0.34 7.4E-06 55.1 7.9 137 441-594 567-721 (1185)
262 PRK04328 hypothetical protein; 92.7 0.65 1.4E-05 47.2 9.6 52 456-518 22-73 (249)
263 PRK11889 flhF flagellar biosyn 92.7 0.54 1.2E-05 51.0 9.2 83 457-552 241-331 (436)
264 KOG0386 Chromatin remodeling c 92.7 0.26 5.7E-06 57.9 7.2 126 441-582 394-529 (1157)
265 PRK12377 putative replication 92.7 0.38 8.1E-06 49.1 7.7 48 457-515 101-148 (248)
266 PRK12323 DNA polymerase III su 92.7 0.64 1.4E-05 53.4 10.1 30 449-478 27-59 (700)
267 PRK13900 type IV secretion sys 92.7 0.22 4.8E-06 53.0 6.2 35 447-482 150-184 (332)
268 PHA03368 DNA packaging termina 92.6 1.9 4E-05 49.6 13.6 117 456-592 253-373 (738)
269 PRK08116 hypothetical protein; 92.5 0.47 1E-05 48.9 8.3 47 458-515 115-161 (268)
270 PRK10436 hypothetical protein; 92.5 0.26 5.7E-06 54.7 6.8 41 442-483 202-243 (462)
271 COG1444 Predicted P-loop ATPas 92.5 1.6 3.5E-05 50.9 13.2 134 441-597 214-349 (758)
272 PRK14952 DNA polymerase III su 92.4 0.2 4.4E-06 57.1 5.9 19 460-478 38-56 (584)
273 PRK09354 recA recombinase A; P 92.4 0.22 4.8E-06 53.1 5.8 45 456-510 59-103 (349)
274 PRK14949 DNA polymerase III su 92.4 0.24 5.2E-06 58.6 6.5 19 460-478 41-59 (944)
275 PRK14963 DNA polymerase III su 92.3 0.55 1.2E-05 52.8 9.1 23 459-482 38-60 (504)
276 cd01129 PulE-GspE PulE/GspE Th 92.3 0.32 6.9E-06 50.0 6.7 40 442-482 64-104 (264)
277 cd00983 recA RecA is a bacter 92.3 0.18 4E-06 53.3 5.0 45 456-510 54-98 (325)
278 PRK14951 DNA polymerase III su 92.3 0.72 1.6E-05 53.0 10.1 20 459-478 40-59 (618)
279 PRK05973 replicative DNA helic 92.3 0.72 1.6E-05 46.7 9.0 52 456-518 63-114 (237)
280 PRK14965 DNA polymerase III su 92.2 0.93 2E-05 51.9 11.0 30 448-477 26-58 (576)
281 PF06862 DUF1253: Protein of u 92.2 0.38 8.2E-06 52.9 7.3 88 495-582 37-175 (442)
282 PRK14950 DNA polymerase III su 92.1 0.63 1.4E-05 53.4 9.5 21 458-478 39-59 (585)
283 TIGR02538 type_IV_pilB type IV 92.1 0.3 6.5E-06 55.8 6.8 41 442-483 300-341 (564)
284 PRK07952 DNA replication prote 92.1 0.59 1.3E-05 47.5 8.2 46 458-514 100-145 (244)
285 PRK14959 DNA polymerase III su 92.1 1 2.3E-05 51.6 11.0 32 448-479 26-60 (624)
286 TIGR01650 PD_CobS cobaltochela 92.0 0.67 1.4E-05 49.0 8.7 30 447-476 54-83 (327)
287 PLN03025 replication factor C 92.0 0.86 1.9E-05 48.0 9.7 20 458-477 35-54 (319)
288 PRK14961 DNA polymerase III su 91.9 0.98 2.1E-05 48.6 10.2 19 459-477 40-58 (363)
289 PF12846 AAA_10: AAA-like doma 91.8 0.25 5.5E-06 50.6 5.4 26 457-482 1-26 (304)
290 PRK14948 DNA polymerase III su 91.8 1.3 2.8E-05 51.2 11.5 21 458-478 39-59 (620)
291 PRK06067 flagellar accessory p 91.7 0.41 8.9E-06 48.0 6.6 51 456-517 24-74 (234)
292 PRK07764 DNA polymerase III su 91.7 0.41 8.8E-06 56.9 7.4 22 459-480 39-60 (824)
293 PRK09183 transposase/IS protei 91.7 0.62 1.3E-05 47.8 7.9 46 455-511 100-145 (259)
294 KOG0298 DEAD box-containing he 91.5 0.55 1.2E-05 56.7 8.2 139 456-597 373-540 (1394)
295 PF03237 Terminase_6: Terminas 91.5 2.1 4.7E-05 44.9 12.2 113 461-595 1-121 (384)
296 TIGR02533 type_II_gspE general 91.5 0.32 6.9E-06 54.5 6.0 41 442-483 226-267 (486)
297 PRK14969 DNA polymerase III su 91.5 0.95 2.1E-05 51.3 9.8 20 459-478 40-59 (527)
298 PRK09111 DNA polymerase III su 91.2 1.3 2.7E-05 51.0 10.6 32 448-479 34-68 (598)
299 PRK12726 flagellar biosynthesi 91.2 0.8 1.7E-05 49.5 8.3 84 456-552 205-296 (407)
300 TIGR00064 ftsY signal recognit 91.1 1.3 2.8E-05 45.8 9.7 84 457-553 72-166 (272)
301 COG1074 RecB ATP-dependent exo 91.1 0.32 6.9E-06 60.1 6.0 65 452-521 11-75 (1139)
302 TIGR02525 plasmid_TraJ plasmid 91.1 0.44 9.6E-06 51.5 6.4 30 453-483 145-174 (372)
303 PRK06995 flhF flagellar biosyn 91.1 0.38 8.1E-06 53.6 6.0 86 456-552 255-345 (484)
304 KOG2028 ATPase related to the 90.9 0.46 1E-05 50.4 6.0 61 447-517 150-212 (554)
305 TIGR03499 FlhF flagellar biosy 90.8 0.65 1.4E-05 48.2 7.1 55 456-518 193-249 (282)
306 KOG1001 Helicase-like transcri 90.7 0.73 1.6E-05 53.4 8.0 114 460-582 155-268 (674)
307 PRK14974 cell division protein 90.6 2.7 5.8E-05 44.9 11.7 56 458-526 141-198 (336)
308 PRK04195 replication factor C 90.6 1.8 3.9E-05 48.5 11.0 20 457-476 39-58 (482)
309 PF06745 KaiC: KaiC; InterPro 90.5 0.49 1.1E-05 47.1 5.8 53 456-518 18-70 (226)
310 PRK14955 DNA polymerase III su 90.5 2.3 5E-05 46.3 11.5 30 449-478 27-59 (397)
311 PRK14957 DNA polymerase III su 90.5 1.4 3.1E-05 49.9 10.0 20 459-478 40-59 (546)
312 PRK14086 dnaA chromosomal repl 90.3 1.7 3.7E-05 49.8 10.4 47 459-514 316-362 (617)
313 cd01126 TraG_VirD4 The TraG/Tr 90.3 0.25 5.3E-06 53.5 3.7 46 459-516 1-46 (384)
314 TIGR01420 pilT_fam pilus retra 90.2 0.6 1.3E-05 49.9 6.5 27 456-483 121-147 (343)
315 cd01393 recA_like RecA is a b 90.2 0.6 1.3E-05 46.2 6.1 47 456-506 18-64 (226)
316 COG1219 ClpX ATP-dependent pro 90.2 0.17 3.7E-06 52.7 2.1 20 456-475 96-115 (408)
317 TIGR01425 SRP54_euk signal rec 90.1 1 2.2E-05 49.5 8.2 83 458-553 101-194 (429)
318 PRK05896 DNA polymerase III su 90.1 1.3 2.9E-05 50.6 9.3 23 458-480 39-61 (605)
319 PF13481 AAA_25: AAA domain; P 90.0 0.87 1.9E-05 43.8 6.9 64 456-520 31-94 (193)
320 TIGR03819 heli_sec_ATPase heli 89.9 0.55 1.2E-05 50.1 5.8 34 441-474 162-195 (340)
321 cd01131 PilT Pilus retraction 89.7 0.48 1E-05 46.4 4.8 24 459-483 3-26 (198)
322 PRK08451 DNA polymerase III su 89.7 1.5 3.2E-05 49.6 9.2 20 459-478 38-57 (535)
323 PF00448 SRP54: SRP54-type pro 89.7 0.91 2E-05 44.5 6.7 57 459-528 3-61 (196)
324 TIGR03600 phage_DnaB phage rep 89.6 0.96 2.1E-05 49.7 7.7 116 455-582 192-319 (421)
325 PRK06835 DNA replication prote 89.6 0.83 1.8E-05 48.5 6.8 47 456-513 182-228 (329)
326 PF02534 T4SS-DNA_transf: Type 89.5 0.42 9.1E-06 53.1 4.8 49 458-518 45-93 (469)
327 TIGR00665 DnaB replicative DNA 89.5 1.5 3.2E-05 48.3 9.1 54 455-518 193-246 (434)
328 TIGR00678 holB DNA polymerase 89.4 1.3 2.7E-05 42.8 7.5 21 458-478 15-35 (188)
329 cd01125 repA Hexameric Replica 89.2 4.5 9.8E-05 40.6 11.7 61 459-520 3-65 (239)
330 TIGR02788 VirB11 P-type DNA tr 89.2 0.53 1.2E-05 49.5 5.0 27 448-474 135-161 (308)
331 TIGR03744 traC_PFL_4706 conjug 89.0 0.92 2E-05 54.7 7.5 42 456-506 474-515 (893)
332 PHA02544 44 clamp loader, smal 89.0 1.6 3.5E-05 45.6 8.6 18 459-476 44-62 (316)
333 PF14617 CMS1: U3-containing 9 88.9 0.79 1.7E-05 46.8 5.8 83 493-579 124-212 (252)
334 PF12775 AAA_7: P-loop contain 88.9 0.38 8.2E-06 49.7 3.6 28 449-476 25-52 (272)
335 PRK13764 ATPase; Provisional 88.9 0.77 1.7E-05 52.5 6.3 32 451-483 251-282 (602)
336 PRK05748 replicative DNA helic 88.8 1.3 2.9E-05 49.0 8.0 115 455-581 201-327 (448)
337 COG0210 UvrD Superfamily I DNA 88.7 1 2.2E-05 52.4 7.4 71 441-520 2-72 (655)
338 TIGR02397 dnaX_nterm DNA polym 88.6 3.1 6.7E-05 44.1 10.5 19 458-476 37-55 (355)
339 TIGR02688 conserved hypothetic 88.5 1.1 2.5E-05 48.9 7.0 23 454-476 206-228 (449)
340 PF08423 Rad51: Rad51; InterP 88.3 0.59 1.3E-05 47.8 4.6 63 449-515 26-92 (256)
341 PRK08533 flagellar accessory p 88.3 0.98 2.1E-05 45.4 6.1 52 455-517 22-73 (230)
342 PRK06921 hypothetical protein; 88.2 1.1 2.4E-05 46.1 6.5 47 457-513 117-163 (266)
343 TIGR03878 thermo_KaiC_2 KaiC d 88.2 0.77 1.7E-05 47.0 5.3 38 456-503 35-72 (259)
344 PRK05707 DNA polymerase III su 88.2 3.2 6.9E-05 44.1 10.1 95 441-536 3-119 (328)
345 cd00984 DnaB_C DnaB helicase C 88.1 0.62 1.3E-05 46.7 4.5 39 455-502 11-49 (242)
346 TIGR02784 addA_alphas double-s 88.1 1 2.2E-05 55.8 7.3 59 456-521 9-67 (1141)
347 TIGR02524 dot_icm_DotB Dot/Icm 88.1 0.6 1.3E-05 50.2 4.6 28 455-483 132-159 (358)
348 TIGR03881 KaiC_arch_4 KaiC dom 88.1 1.1 2.3E-05 44.7 6.1 48 456-514 19-66 (229)
349 TIGR00767 rho transcription te 88.0 0.69 1.5E-05 50.2 4.9 26 456-482 167-192 (415)
350 PRK06647 DNA polymerase III su 87.9 1.3 2.8E-05 50.5 7.4 19 459-477 40-58 (563)
351 PRK13897 type IV secretion sys 87.9 0.59 1.3E-05 53.6 4.6 57 457-529 158-214 (606)
352 COG2255 RuvB Holliday junction 87.8 1.5 3.3E-05 45.3 6.9 19 458-476 53-71 (332)
353 PRK14970 DNA polymerase III su 87.7 4.4 9.6E-05 43.4 11.1 24 458-482 40-63 (367)
354 PRK10263 DNA translocase FtsK; 87.4 0.97 2.1E-05 55.4 6.2 29 570-598 1142-1170(1355)
355 cd00544 CobU Adenosylcobinamid 87.4 0.91 2E-05 43.5 4.9 45 460-517 2-46 (169)
356 PRK00440 rfc replication facto 87.2 3.8 8.2E-05 42.6 10.0 19 458-476 39-57 (319)
357 PF04665 Pox_A32: Poxvirus A32 87.1 0.94 2E-05 45.9 5.1 30 452-482 8-37 (241)
358 PRK07133 DNA polymerase III su 86.9 2.8 6.1E-05 49.0 9.4 30 449-478 29-61 (725)
359 PRK06305 DNA polymerase III su 86.7 2.6 5.6E-05 46.9 8.7 22 458-479 40-61 (451)
360 PRK13850 type IV secretion sys 86.6 0.93 2E-05 52.7 5.3 58 456-529 138-195 (670)
361 PRK10689 transcription-repair 86.6 3 6.5E-05 51.6 9.9 90 495-597 809-905 (1147)
362 PF13177 DNA_pol3_delta2: DNA 86.6 3.6 7.8E-05 38.9 8.5 24 458-481 20-43 (162)
363 PF00308 Bac_DnaA: Bacterial d 86.5 1.7 3.6E-05 43.4 6.5 38 459-504 36-73 (219)
364 PRK08760 replicative DNA helic 86.4 1.9 4.1E-05 48.3 7.5 113 455-581 227-352 (476)
365 PRK14723 flhF flagellar biosyn 86.4 1.7 3.7E-05 51.0 7.3 86 456-552 184-274 (767)
366 PRK12724 flagellar biosynthesi 86.3 1.8 3.8E-05 47.5 6.9 52 457-517 223-276 (432)
367 PF01580 FtsK_SpoIIIE: FtsK/Sp 86.2 1.3 2.9E-05 43.2 5.6 28 456-483 37-64 (205)
368 COG1435 Tdk Thymidine kinase [ 86.2 2.6 5.6E-05 41.3 7.2 103 458-594 5-108 (201)
369 TIGR03743 SXT_TraD conjugative 86.1 2.1 4.6E-05 49.6 7.9 53 457-519 176-230 (634)
370 COG2812 DnaX DNA polymerase II 86.1 0.96 2.1E-05 50.7 4.9 21 459-479 40-60 (515)
371 TIGR02237 recomb_radB DNA repa 85.8 1.1 2.5E-05 43.7 4.8 40 456-505 11-50 (209)
372 COG1419 FlhF Flagellar GTP-bin 85.7 3.1 6.7E-05 45.1 8.3 19 456-474 202-220 (407)
373 PRK12727 flagellar biosynthesi 85.7 1.9 4.2E-05 48.5 7.0 22 455-476 348-369 (559)
374 cd01127 TrwB Bacterial conjuga 85.6 0.91 2E-05 49.7 4.5 27 456-483 41-67 (410)
375 CHL00176 ftsH cell division pr 85.6 3 6.4E-05 48.4 8.7 20 457-476 216-235 (638)
376 PRK09112 DNA polymerase III su 85.5 4.8 0.0001 43.2 9.7 33 450-483 35-70 (351)
377 PRK14971 DNA polymerase III su 85.5 3.9 8.4E-05 47.3 9.6 20 459-478 41-60 (614)
378 PF01443 Viral_helicase1: Vira 85.4 0.65 1.4E-05 46.1 2.9 14 460-473 1-14 (234)
379 TIGR00580 mfd transcription-re 85.4 3.2 6.8E-05 50.2 9.1 76 495-580 660-742 (926)
380 PF10412 TrwB_AAD_bind: Type I 85.3 1.3 2.9E-05 48.0 5.5 44 456-509 14-57 (386)
381 PRK05642 DNA replication initi 85.3 1.1 2.5E-05 45.0 4.7 42 458-510 46-87 (234)
382 TIGR03880 KaiC_arch_3 KaiC dom 85.2 1.9 4.1E-05 42.8 6.1 51 456-517 15-65 (224)
383 PF13555 AAA_29: P-loop contai 85.1 0.97 2.1E-05 35.9 3.2 18 457-474 23-40 (62)
384 PLN00020 ribulose bisphosphate 85.0 1 2.2E-05 48.4 4.3 20 457-476 148-167 (413)
385 PF13207 AAA_17: AAA domain; P 85.0 0.59 1.3E-05 41.3 2.2 17 460-476 2-18 (121)
386 PF01935 DUF87: Domain of unkn 85.0 1.3 2.8E-05 44.1 4.8 26 457-483 23-48 (229)
387 TIGR03754 conj_TOL_TraD conjug 84.9 2.8 6E-05 48.4 8.0 54 457-520 180-235 (643)
388 TIGR01243 CDC48 AAA family ATP 84.7 1.4 3E-05 52.0 5.7 20 457-476 487-506 (733)
389 TIGR00416 sms DNA repair prote 84.7 5 0.00011 44.6 9.7 51 456-517 93-143 (454)
390 PRK14712 conjugal transfer nic 84.7 2.9 6.3E-05 52.9 8.5 64 441-512 835-901 (1623)
391 PRK09519 recA DNA recombinatio 84.5 1.7 3.8E-05 51.1 6.2 45 456-510 59-103 (790)
392 PRK13709 conjugal transfer nic 84.5 3 6.4E-05 53.4 8.6 64 441-512 967-1033(1747)
393 PRK13880 conjugal transfer cou 84.5 0.86 1.9E-05 52.8 3.7 46 456-513 174-219 (636)
394 PHA00729 NTP-binding motif con 84.4 1.4 3.1E-05 44.2 4.8 59 458-517 18-79 (226)
395 PF13238 AAA_18: AAA domain; P 84.3 0.66 1.4E-05 41.0 2.2 17 460-476 1-17 (129)
396 TIGR02640 gas_vesic_GvpN gas v 84.3 1.3 2.8E-05 45.4 4.6 22 455-476 19-40 (262)
397 TIGR00959 ffh signal recogniti 84.3 2.5 5.4E-05 46.6 7.0 84 458-553 100-194 (428)
398 PRK08084 DNA replication initi 84.3 1.5 3.3E-05 44.1 5.0 52 443-504 29-82 (235)
399 PRK14953 DNA polymerase III su 84.1 2.9 6.3E-05 46.9 7.6 19 460-478 41-59 (486)
400 KOG0733 Nuclear AAA ATPase (VC 84.0 1.3 2.8E-05 50.1 4.6 20 457-476 545-564 (802)
401 PF06733 DEAD_2: DEAD_2; Inte 84.0 0.48 1E-05 45.2 1.2 44 538-582 115-159 (174)
402 PRK05800 cobU adenosylcobinami 84.0 1.7 3.6E-05 41.7 4.9 46 458-516 2-47 (170)
403 PF00154 RecA: recA bacterial 84.0 1.7 3.7E-05 45.9 5.4 85 457-581 53-144 (322)
404 PF13671 AAA_33: AAA domain; P 83.9 0.69 1.5E-05 42.0 2.2 17 460-476 2-18 (143)
405 COG4626 Phage terminase-like p 83.9 5.5 0.00012 44.8 9.4 73 441-520 61-143 (546)
406 cd01394 radB RadB. The archaea 83.9 1.5 3.2E-05 43.3 4.6 37 456-502 18-54 (218)
407 PRK09376 rho transcription ter 83.7 2.4 5.3E-05 46.0 6.5 27 456-483 168-194 (416)
408 COG0467 RAD55 RecA-superfamily 83.7 1.4 2.9E-05 45.0 4.5 51 456-517 22-72 (260)
409 TIGR02759 TraD_Ftype type IV c 83.6 1.5 3.2E-05 50.1 5.1 26 457-483 176-201 (566)
410 PRK10867 signal recognition pa 83.5 2.6 5.6E-05 46.5 6.7 84 458-553 101-195 (433)
411 PRK06731 flhF flagellar biosyn 83.5 5.8 0.00013 41.0 8.9 23 456-478 74-96 (270)
412 PRK05636 replicative DNA helic 83.4 3 6.4E-05 47.0 7.3 116 455-582 263-389 (505)
413 TIGR02746 TraC-F-type type-IV 83.3 1.5 3.1E-05 52.3 5.1 27 456-482 429-455 (797)
414 PRK14954 DNA polymerase III su 83.3 2.8 6.2E-05 48.3 7.2 21 458-478 39-59 (620)
415 PRK13695 putative NTPase; Prov 83.2 14 0.0003 35.0 11.0 23 459-482 2-24 (174)
416 COG0606 Predicted ATPase with 83.2 1.1 2.3E-05 49.4 3.5 27 448-474 189-215 (490)
417 TIGR02760 TraI_TIGR conjugativ 82.9 4.8 0.0001 52.6 9.7 67 440-512 1018-1085(1960)
418 PRK06904 replicative DNA helic 82.8 6.2 0.00014 44.1 9.5 56 454-519 218-273 (472)
419 COG0468 RecA RecA/RadA recombi 82.8 2.1 4.5E-05 44.4 5.3 89 456-581 59-154 (279)
420 PRK05595 replicative DNA helic 82.7 2.7 5.8E-05 46.6 6.6 116 455-582 199-325 (444)
421 PRK10416 signal recognition pa 82.7 3.1 6.8E-05 44.0 6.8 54 456-519 113-168 (318)
422 KOG1133 Helicase of the DEAD s 82.7 2.1 4.6E-05 48.9 5.7 45 441-485 15-62 (821)
423 PRK07471 DNA polymerase III su 82.6 7.2 0.00016 42.1 9.6 25 459-483 43-67 (365)
424 TIGR00763 lon ATP-dependent pr 82.3 2.7 6E-05 49.9 6.9 20 457-476 347-366 (775)
425 PRK11034 clpA ATP-dependent Cl 82.3 3.8 8.2E-05 48.5 7.9 101 456-598 206-313 (758)
426 COG2109 BtuR ATP:corrinoid ade 82.0 3.5 7.5E-05 40.1 6.1 40 458-507 29-68 (198)
427 COG3598 RepA RecA-family ATPas 81.9 2.4 5.3E-05 44.5 5.4 80 443-525 75-156 (402)
428 CHL00095 clpC Clp protease ATP 81.9 3.4 7.4E-05 49.5 7.5 18 459-476 541-558 (821)
429 PHA02244 ATPase-like protein 81.9 1.8 3.9E-05 46.6 4.6 26 451-476 113-138 (383)
430 PF01078 Mg_chelatase: Magnesi 81.9 1.5 3.3E-05 43.3 3.8 28 448-475 13-40 (206)
431 PRK13822 conjugal transfer cou 81.7 2 4.2E-05 49.8 5.1 57 457-529 224-280 (641)
432 TIGR02655 circ_KaiC circadian 81.6 2.6 5.5E-05 47.3 6.0 53 456-518 20-72 (484)
433 PRK00771 signal recognition pa 81.5 3.6 7.9E-05 45.4 6.9 58 457-527 95-154 (437)
434 PRK09361 radB DNA repair and r 81.4 2.1 4.5E-05 42.5 4.7 39 456-504 22-60 (225)
435 COG3267 ExeA Type II secretory 81.3 8.8 0.00019 39.2 8.9 24 456-480 49-73 (269)
436 PRK06893 DNA replication initi 81.2 2.1 4.4E-05 43.0 4.6 37 457-503 39-75 (229)
437 PRK14729 miaA tRNA delta(2)-is 81.1 0.98 2.1E-05 47.3 2.2 22 457-478 4-25 (300)
438 PRK08506 replicative DNA helic 81.1 6.6 0.00014 43.9 8.9 113 455-582 190-316 (472)
439 cd03115 SRP The signal recogni 81.0 3.8 8.3E-05 38.7 6.2 19 460-478 3-21 (173)
440 PRK08699 DNA polymerase III su 80.9 11 0.00024 40.0 10.1 40 443-482 3-46 (325)
441 PRK08939 primosomal protein Dn 80.8 2.7 5.8E-05 44.3 5.4 47 457-514 156-202 (306)
442 cd01128 rho_factor Transcripti 80.8 2.4 5.2E-05 43.2 5.0 18 456-473 15-32 (249)
443 PHA00012 I assembly protein 80.0 4.6 9.9E-05 42.7 6.6 25 460-484 4-28 (361)
444 PF07724 AAA_2: AAA domain (Cd 79.8 1.3 2.9E-05 42.4 2.6 19 458-476 4-22 (171)
445 PRK07414 cob(I)yrinic acid a,c 79.8 3.6 7.7E-05 39.8 5.4 42 456-507 20-61 (178)
446 PRK06871 DNA polymerase III su 79.7 14 0.00029 39.4 10.3 93 443-536 4-120 (325)
447 PRK09165 replicative DNA helic 79.7 6.7 0.00015 44.2 8.4 123 455-582 215-355 (497)
448 COG3451 VirB4 Type IV secretor 79.6 2.3 5E-05 50.5 5.0 25 458-482 437-461 (796)
449 TIGR01243 CDC48 AAA family ATP 79.5 4.9 0.00011 47.5 7.7 21 456-476 211-231 (733)
450 COG1197 Mfd Transcription-repa 79.5 6 0.00013 48.1 8.2 78 494-581 802-886 (1139)
451 PRK14721 flhF flagellar biosyn 79.2 2.9 6.3E-05 45.9 5.2 22 455-476 189-210 (420)
452 KOG0331 ATP-dependent RNA heli 79.2 6 0.00013 44.4 7.7 77 493-581 339-430 (519)
453 PF00004 AAA: ATPase family as 79.1 1.7 3.8E-05 38.4 3.0 17 460-476 1-17 (132)
454 PF07728 AAA_5: AAA domain (dy 79.1 1.6 3.5E-05 39.6 2.8 18 459-476 1-18 (139)
455 COG0593 DnaA ATPase involved i 78.8 5.2 0.00011 43.7 6.9 55 457-519 113-174 (408)
456 TIGR02655 circ_KaiC circadian 78.8 3.7 8E-05 46.0 6.1 52 456-518 262-313 (484)
457 PRK00131 aroK shikimate kinase 78.8 1.3 2.9E-05 41.5 2.2 21 456-476 3-23 (175)
458 COG1618 Predicted nucleotide k 78.7 3.5 7.6E-05 39.2 4.8 25 458-483 6-30 (179)
459 KOG1969 DNA replication checkp 78.7 6.5 0.00014 45.5 7.8 19 458-476 327-345 (877)
460 KOG0745 Putative ATP-dependent 78.5 1.2 2.7E-05 48.3 2.0 20 456-475 225-244 (564)
461 PLN03186 DNA repair protein RA 78.2 5 0.00011 42.9 6.5 48 456-507 122-169 (342)
462 KOG1807 Helicases [Replication 78.2 4.2 9.1E-05 47.1 6.1 74 438-516 375-448 (1025)
463 TIGR02767 TraG-Ti Ti-type conj 77.9 2.2 4.9E-05 49.2 4.1 48 457-517 211-258 (623)
464 PRK00091 miaA tRNA delta(2)-is 77.8 1.4 3.1E-05 46.3 2.3 19 458-476 5-23 (307)
465 KOG2227 Pre-initiation complex 77.8 2.4 5.3E-05 46.5 4.0 53 455-515 173-226 (529)
466 PHA00350 putative assembly pro 77.7 5.3 0.00011 43.6 6.6 24 460-483 4-28 (399)
467 PRK08769 DNA polymerase III su 77.4 16 0.00035 38.7 10.0 44 440-483 3-52 (319)
468 PRK10787 DNA-binding ATP-depen 77.3 5 0.00011 47.7 6.8 21 456-476 348-368 (784)
469 PLN02165 adenylate isopentenyl 77.1 1.7 3.7E-05 46.2 2.6 21 456-476 42-62 (334)
470 PRK13876 conjugal transfer cou 77.1 2.1 4.5E-05 49.8 3.5 50 456-518 143-192 (663)
471 COG1220 HslU ATP-dependent pro 76.9 2.1 4.5E-05 45.3 3.1 18 457-474 50-67 (444)
472 PRK13873 conjugal transfer ATP 76.8 3 6.4E-05 49.9 4.8 22 458-479 442-463 (811)
473 PF01480 PWI: PWI domain; Int 76.3 4 8.7E-05 33.7 4.1 57 227-288 5-66 (77)
474 cd00071 GMPK Guanosine monopho 76.2 2.2 4.8E-05 39.1 2.8 17 460-476 2-18 (137)
475 PF02456 Adeno_IVa2: Adenoviru 76.2 2.5 5.5E-05 44.1 3.4 42 460-509 90-131 (369)
476 PRK07004 replicative DNA helic 76.2 8.4 0.00018 42.9 7.9 114 455-582 211-338 (460)
477 KOG0344 ATP-dependent RNA heli 76.0 29 0.00062 39.3 11.6 93 466-577 366-465 (593)
478 PRK10078 ribose 1,5-bisphospho 75.8 1.9 4.1E-05 41.6 2.4 20 457-476 2-21 (186)
479 TIGR01313 therm_gnt_kin carboh 75.7 1.6 3.5E-05 40.8 1.9 17 460-476 1-17 (163)
480 COG1224 TIP49 DNA helicase TIP 75.5 6.9 0.00015 41.8 6.5 28 456-484 64-91 (450)
481 PRK05986 cob(I)alamin adenolsy 75.5 8.2 0.00018 37.8 6.6 42 456-507 21-62 (191)
482 KOG0651 26S proteasome regulat 75.5 6.4 0.00014 41.3 6.1 23 457-479 166-188 (388)
483 PF14532 Sigma54_activ_2: Sigm 75.4 3.4 7.3E-05 37.7 3.8 22 455-476 19-40 (138)
484 COG2909 MalT ATP-dependent tra 75.4 3.9 8.5E-05 48.0 5.0 25 571-598 132-156 (894)
485 TIGR02880 cbbX_cfxQ probable R 75.0 2.4 5.2E-05 44.1 3.0 20 457-476 58-77 (284)
486 COG0324 MiaA tRNA delta(2)-iso 75.0 1.9 4.1E-05 45.2 2.2 18 459-476 5-22 (308)
487 CHL00181 cbbX CbbX; Provisiona 74.7 2.2 4.8E-05 44.4 2.6 21 457-477 59-79 (287)
488 KOG0736 Peroxisome assembly fa 74.6 4.8 0.0001 46.9 5.4 29 571-599 767-801 (953)
489 PRK08118 topology modulation p 74.5 2.1 4.5E-05 40.8 2.2 17 459-475 3-19 (167)
490 cd00227 CPT Chloramphenicol (C 74.5 2.2 4.8E-05 40.6 2.4 20 457-476 2-21 (175)
491 cd01123 Rad51_DMC1_radA Rad51_ 74.4 3.2 7E-05 41.2 3.7 45 456-504 18-62 (235)
492 PRK13891 conjugal transfer pro 74.2 4.2 9.1E-05 48.9 5.2 24 457-480 488-511 (852)
493 TIGR03783 Bac_Flav_CT_G Bacter 74.2 5 0.00011 48.0 5.8 27 456-482 437-463 (829)
494 PRK12422 chromosomal replicati 74.1 6 0.00013 43.9 6.0 43 458-511 142-184 (445)
495 COG0513 SrmB Superfamily II DN 74.1 13 0.00029 42.0 8.9 57 495-559 273-336 (513)
496 PRK09302 circadian clock prote 73.9 5.9 0.00013 44.6 6.0 51 456-517 272-322 (509)
497 TIGR02322 phosphon_PhnN phosph 73.8 2.2 4.8E-05 40.5 2.3 19 458-476 2-20 (179)
498 PRK07773 replicative DNA helic 73.8 8.3 0.00018 46.6 7.5 117 455-582 215-341 (886)
499 PRK07261 topology modulation p 73.7 2.3 4.9E-05 40.6 2.3 18 459-476 2-19 (171)
500 PF03796 DnaB_C: DnaB-like hel 73.6 4.9 0.00011 40.8 4.9 39 456-503 18-56 (259)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4e-60 Score=531.24 Aligned_cols=370 Identities=38% Similarity=0.581 Sum_probs=300.6
Q ss_pred CCCCcCcHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCCChhHHHHHHHHhhCCCchHHHHHHHHhHHHHHHHHHh
Q 007492 220 ADGRNFNLSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLISHRKQLVDAIRH 299 (601)
Q Consensus 220 ~~~~~id~~wL~r~~~~~~~~~~~~~~~~~l~~~i~~~L~s~~~~~e~e~~L~~llg~~~~~~i~~l~~~r~~i~~~~~~ 299 (601)
..+++||++||||.++++|++ +. ..++....+..+|....+..++++.|+.+++|++|.||..|.+||..|+||+++
T Consensus 87 t~~~dIda~~LQR~irk~yel--a~-~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~l~kNr~~i~~~t~L 163 (1674)
T KOG0951|consen 87 TRESDIDAPWLQRKIRKVYEL--AS-RLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEFLRKNRLGIVWCTRL 163 (1674)
T ss_pred cchhhhhHHHHHHHHHHHHhc--ch-hhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHHHHhhcchhhHHHHh
Confidence 347899999999999999986 22 345555666667766557889999999999999999999999999999999987
Q ss_pred hhhhhhhhhhhhccccCCCCCCccccccchHHHHHHHHHH--------HH-HHhhhcCccc-cccccccccchhhhHHhh
Q 007492 300 GMLLLKSEKTASNSQSRMPSYGTQVTVQTESERQIDKLRR--------KE-EKRHRRGTEY-AAENDVSSTSFSSLIEAS 369 (601)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 369 (601)
..+ ..+.++..+++.|+..|...+ ..+.+... ++ +++..++... .........+...+ ...
T Consensus 164 ~~a--aresE~~siEe~m~~lgp~l~------d~V~~~~a~~~~~~~qeek~~~l~~~e~~~~~~~~ls~td~~~v-~~~ 234 (1674)
T KOG0951|consen 164 ARA--ARESERLSIEEIMRFLGPELN------DIVAKYIATRQTKSEQEEKEKKLEKREELLVSVIALSKTDVLGV-LEM 234 (1674)
T ss_pred hhh--hccchhccHHHHHhhcChhhH------HHHHHHHhhhcccccchhhhhhhhccchhhhhhhhhcccccccc-ccc
Confidence 654 334456677888887763210 01111100 00 0111000000 00000000111111 111
Q ss_pred hccCCCccccccCCC---CCccccCCcchhhcccCCcceEecCCCCCCCCCCCccccchhhhHHHHHHHhcCCCCCcHHH
Q 007492 370 ERKNPLDGLIGSGQG---SMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQ 446 (601)
Q Consensus 370 ~~~~~~~~~~~~~~~---~~~~~~lp~~~~~~~~~~~~e~~vp~~~~~~~~~~~~l~~i~~L~~~~~~~f~g~~~l~~iQ 446 (601)
....+++.+.+.+++ .+..|.||+|+++...++|++++||++++.|+..++++..++++|+|++.+|.|..+||++|
T Consensus 235 ~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNrIQ 314 (1674)
T KOG0951|consen 235 RPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPKWNQPAFFGKQSLNRIQ 314 (1674)
T ss_pred CcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcchhhhhcccchhhhHHH
Confidence 222347777766655 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhccc-CCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcE
Q 007492 447 SRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD-GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMI 525 (601)
Q Consensus 447 ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~-~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~ 525 (601)
++++++++...+|+++|||||+||||+|+++||+.+..|.+. |......++++|++||++||+++++.|++++.++||+
T Consensus 315 S~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~ 394 (1674)
T KOG0951|consen 315 SKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGIT 394 (1674)
T ss_pred HHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcE
Confidence 999999998899999999999999999999999999998763 6666778999999999999999999999999999999
Q ss_pred EEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHHhhhcC
Q 007492 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVYN 601 (601)
Q Consensus 526 V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~r~~e~ 601 (601)
|.++|||.+++..++.+++|||||||+||+++|++.+..+.+.|+++||||+|++||+|||++|+||+|+.|+.|+
T Consensus 395 V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses 470 (1674)
T KOG0951|consen 395 VLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSES 470 (1674)
T ss_pred EEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.8e-47 Score=423.44 Aligned_cols=214 Identities=55% Similarity=0.894 Sum_probs=204.3
Q ss_pred ccccCCcchhhcccCCcceEecCCCCCCCCCCCccccchhhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccC
Q 007492 387 AVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPT 466 (601)
Q Consensus 387 ~~~~lp~~~~~~~~~~~~e~~vp~~~~~~~~~~~~l~~i~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApT 466 (601)
.++.||+|+.+...+.|+|+.+|+..+.+ ...++++.|++||+.++..|.+|+.||.+||.|||.||++++|+||||||
T Consensus 57 ~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPT 135 (1230)
T KOG0952|consen 57 IKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPT 135 (1230)
T ss_pred ceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCC
Confidence 37899999999999999999999998887 66678999999999999888899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEE
Q 007492 467 GAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMI 546 (601)
Q Consensus 467 GsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~Ii 546 (601)
|||||.+|+|+||+.|.++...+.+..+++|+||||||||||.+++..|.++|.++|++|.++|||+++++.++..||||
T Consensus 136 GsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqii 215 (1230)
T KOG0952|consen 136 GSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTEIADTQII 215 (1230)
T ss_pred CCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHHHHhcCEE
Confidence 99999999999999999987778888999999999999999999999999999999999999999999999999999999
Q ss_pred EEChhhHHHHHccC-CCCCccCCccEEEeccCcccCCCChHHHHHHHHHHHhhhcC
Q 007492 547 VTTPEKWDVITRKS-SDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVYN 601 (601)
Q Consensus 547 VtTPekld~l~r~~-~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~r~~e~ 601 (601)
||||||||+++|++ .+..|...|+||||||+|+|+|+|||++|.||+|++|+||+
T Consensus 216 VTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 216 VTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred EecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 99999999999998 56778888999999999999999999999999999999996
No 3
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.95 E-value=1.6e-28 Score=281.12 Aligned_cols=147 Identities=44% Similarity=0.636 Sum_probs=133.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++|+|+.+++-++ +++|+|||||||||||++|+++|++.+.+ .++++|||||+|+||.|++++|+ +++
T Consensus 32 l~~~qq~av~~~~~-~~~N~li~aPTgsGKTlIA~lai~~~l~~---------~~~k~vYivPlkALa~Ek~~~~~-~~~ 100 (766)
T COG1204 32 LFNPQQEAVEKGLL-SDENVLISAPTGSGKTLIALLAILSTLLE---------GGGKVVYIVPLKALAEEKYEEFS-RLE 100 (766)
T ss_pred hhHHHHHHhhcccc-CCCcEEEEcCCCCchHHHHHHHHHHHHHh---------cCCcEEEEeChHHHHHHHHHHhh-hHH
Confidence 45566666666665 59999999999999999999999999876 37899999999999999999999 888
Q ss_pred CCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCC-ChHHHHHHHHHHHhhh
Q 007492 521 PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVARTLRQV 599 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~-rg~~le~iv~r~~r~~ 599 (601)
.+|++|...|||.+.....+.+++|||+||||||.++|+... +...|++|||||+|+++|. |||++|.|++|+.+..
T Consensus 101 ~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 101 ELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred hcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999999999999998999999999999999999999866 6667999999999999996 9999999999999986
Q ss_pred c
Q 007492 600 Y 600 (601)
Q Consensus 600 e 600 (601)
+
T Consensus 179 ~ 179 (766)
T COG1204 179 E 179 (766)
T ss_pred c
Confidence 5
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=4.4e-26 Score=233.26 Aligned_cols=158 Identities=27% Similarity=0.419 Sum_probs=136.6
Q ss_pred HHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 429 DEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 429 ~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
|++++..- .||+.|++||++++|.++ .|++++..|.||||||.+|++||++++.++ ...+.++|++|||+|
T Consensus 70 ~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------p~~~~~lVLtPtREL 141 (476)
T KOG0330|consen 70 PELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQE-------PKLFFALVLTPTREL 141 (476)
T ss_pred HHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcC-------CCCceEEEecCcHHH
Confidence 44444333 679999999999999998 799999999999999999999999999874 356999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhh-HHHHH-ccCCCCCccCCccEEEeccCcccCC
Q 007492 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEK-WDVIT-RKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPek-ld~l~-r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
|.||...|..+....|++|..+.|++....+ ...++||||+||++ |+.+. .+. +++- .++++|+||||+|+|
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le-~lk~LVlDEADrlLd 218 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLE-QLKFLVLDEADRLLD 218 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHH-HhHHHhhchHHhhhh
Confidence 9999999999999999999999999887543 34689999999999 57776 333 3333 499999999999998
Q ss_pred -CChHHHHHHHHHHHh
Q 007492 583 -DRGPVIEALVARTLR 597 (601)
Q Consensus 583 -~rg~~le~iv~r~~r 597 (601)
+|++.++.|+.++++
T Consensus 219 ~dF~~~ld~ILk~ip~ 234 (476)
T KOG0330|consen 219 MDFEEELDYILKVIPR 234 (476)
T ss_pred hhhHHHHHHHHHhcCc
Confidence 899999999998874
No 5
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=2e-25 Score=259.10 Aligned_cols=157 Identities=31% Similarity=0.456 Sum_probs=136.6
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||++...++ .|+..|+|+|.+||+..+.+|+|++++||||||||++|.+++++.+. .+.++|||+|+|
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~----------~~~kal~i~P~r 77 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA----------RGGKALYIVPLR 77 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------cCCcEEEEeChH
Confidence 566666666 58999999999999997778999999999999999999999999884 256999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
+||.|++..|.+ +..+|++|..++|+.......+..++|+|||||+|+.+.++.. .+.+.+++|||||+|++.+ .|
T Consensus 78 aLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 78 ALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCcc
Confidence 999999999986 4456999999999988766666779999999999988887643 2445799999999999997 79
Q ss_pred hHHHHHHHHHHHh
Q 007492 585 GPVIEALVARTLR 597 (601)
Q Consensus 585 g~~le~iv~r~~r 597 (601)
|+.+|.+++|+.+
T Consensus 155 g~~le~il~rl~~ 167 (737)
T PRK02362 155 GPTLEVTLAKLRR 167 (737)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999864
No 6
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=227.16 Aligned_cols=168 Identities=20% Similarity=0.340 Sum_probs=140.3
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|.+|...++ .||+.+||+|..++|.++ .+.|++|-||||||||++|++|++..+...- +.......-+|||+|||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~--~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRRE--AKTPPGQVGALIISPTR 89 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhc--cCCCccceeEEEecCcH
Confidence 346777776 799999999999999998 7999999999999999999999999885422 12222346899999999
Q ss_pred hHHHHHHHHHHhhcCC-CCcEEEEEeCCCccchhh----cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcc
Q 007492 506 ALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRNE----LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~-~~i~V~~l~Gd~~~~~~~----~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
+||.||.+....++.. .++.+..++|+..+.... -++++|+||||+++ |++.+....+++ +.+.+||+||||+
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~-rsLe~LVLDEADr 168 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSF-RSLEILVLDEADR 168 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccc-cccceEEecchHh
Confidence 9999999998888876 578899999998776442 36899999999997 777776655553 4599999999999
Q ss_pred cCC-CChHHHHHHHHHHHhhh
Q 007492 580 LND-DRGPVIEALVARTLRQV 599 (601)
Q Consensus 580 l~d-~rg~~le~iv~r~~r~~ 599 (601)
|+| .|...++.|++++|+|-
T Consensus 169 LldmgFe~~~n~ILs~LPKQR 189 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQR 189 (567)
T ss_pred HhcccHHHHHHHHHHhccccc
Confidence 999 78999999999999983
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=2.4e-24 Score=235.11 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=131.5
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|+++...++ .||..|+++|.+|||.++ .|+|++++||||||||++|++|+++.+............++++|||+||+
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Ptr 93 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTR 93 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcH
Confidence 344443333 699999999999999998 79999999999999999999999998875322111112468999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+||.|++..+..+....++++..++|+.....+. ..+++|+|+||+++ +.+..+...+. .+++|||||||+|.
T Consensus 94 eLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~---~v~~lViDEad~l~ 170 (423)
T PRK04837 94 ELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLG---AIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccc---cccEEEEecHHHHh
Confidence 9999999999999998999999999987754331 24689999999997 55554443333 69999999999998
Q ss_pred C-CChHHHHHHHHHHH
Q 007492 582 D-DRGPVIEALVARTL 596 (601)
Q Consensus 582 d-~rg~~le~iv~r~~ 596 (601)
+ .+...++.++.+++
T Consensus 171 ~~~f~~~i~~i~~~~~ 186 (423)
T PRK04837 171 DLGFIKDIRWLFRRMP 186 (423)
T ss_pred hcccHHHHHHHHHhCC
Confidence 7 67788888877664
No 8
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.6e-24 Score=234.41 Aligned_cols=156 Identities=19% Similarity=0.289 Sum_probs=137.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+|||++.||.++ .|+|++..|.||||||++|++|++.++..+.. ..-...++++|+++|||+||.|+...+.
T Consensus 109 ~g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~-~~~~~~~P~vLVL~PTRELA~QV~~~~~ 186 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG-KLSRGDGPIVLVLAPTRELAVQVQAEAR 186 (519)
T ss_pred cCCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccc-cccCCCCCeEEEEcCcHHHHHHHHHHHH
Confidence 799999999999999998 79999999999999999999999999876311 1112358899999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
.+....+++..+++|+.+...+. ..+++|+|+||+++ |.+..+..+++ .|.++|+||||+|+| .|.+.++.|
T Consensus 187 ~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~---~v~ylVLDEADrMldmGFe~qI~~I 263 (519)
T KOG0331|consen 187 EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLS---RVTYLVLDEADRMLDMGFEPQIRKI 263 (519)
T ss_pred HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcccc---ceeEEEeccHHhhhccccHHHHHHH
Confidence 99999999999999999987654 35799999999996 88888777766 699999999999999 799999999
Q ss_pred HHHHHh
Q 007492 592 VARTLR 597 (601)
Q Consensus 592 v~r~~r 597 (601)
+.++++
T Consensus 264 l~~i~~ 269 (519)
T KOG0331|consen 264 LSQIPR 269 (519)
T ss_pred HHhcCC
Confidence 998844
No 9
>PRK00254 ski2-like helicase; Provisional
Probab=99.91 E-value=4.2e-24 Score=247.47 Aligned_cols=158 Identities=32% Similarity=0.484 Sum_probs=134.5
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
+|+.....+ .||..|+|+|.++|+..+.+|+|++++||||||||.+|.+++++.+.. .+.++|||+|++
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---------~~~~~l~l~P~~ 78 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---------EGGKAVYLVPLK 78 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------cCCeEEEEeChH
Confidence 344444444 689999999999999866689999999999999999999999998764 357999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
+||.|++..|.++ ..+|++|..++|+.........+++|+|+||++|+.+.+... .+.+.+++|||||+|++.+ .|
T Consensus 79 aLa~q~~~~~~~~-~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 79 ALAEEKYREFKDW-EKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHH-hhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCccc
Confidence 9999999999874 567999999999987766666789999999999988877542 2345799999999999987 79
Q ss_pred hHHHHHHHHHHHh
Q 007492 585 GPVIEALVARTLR 597 (601)
Q Consensus 585 g~~le~iv~r~~r 597 (601)
|+.++.+++++.+
T Consensus 156 g~~le~il~~l~~ 168 (720)
T PRK00254 156 GATLEMILTHMLG 168 (720)
T ss_pred hHHHHHHHHhcCc
Confidence 9999999998753
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.91 E-value=8.2e-24 Score=236.24 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=130.5
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||+.....+ .||..|||+|.++||.++ +|+|++++||||||||++|++|++..+............++++|||+|||
T Consensus 128 l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTr 206 (518)
T PLN00206 128 LPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTR 206 (518)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCH
Confidence 455554444 699999999999999998 79999999999999999999999988764322222223578999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+||.|+...+..+.+..++++..++|+.....+. ..+++|+|+||++| +.+.++...+. .+++|||||||+|.
T Consensus 207 eLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~---~v~~lViDEad~ml 283 (518)
T PLN00206 207 ELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELD---NVSVLVLDEVDCML 283 (518)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccch---heeEEEeecHHHHh
Confidence 9999999999988888889988888887665432 35789999999997 66666543333 69999999999998
Q ss_pred C-CChHHHHHHHHHH
Q 007492 582 D-DRGPVIEALVART 595 (601)
Q Consensus 582 d-~rg~~le~iv~r~ 595 (601)
+ .+.+.+..|+..+
T Consensus 284 ~~gf~~~i~~i~~~l 298 (518)
T PLN00206 284 ERGFRDQVMQIFQAL 298 (518)
T ss_pred hcchHHHHHHHHHhC
Confidence 7 5777776666543
No 11
>PTZ00110 helicase; Provisional
Probab=99.90 E-value=2e-23 Score=234.23 Aligned_cols=162 Identities=16% Similarity=0.268 Sum_probs=131.7
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||+++..++ .||..|+++|.++||.++ .|+|++++||||||||++|++|++..+..... .....++.+|||+|||
T Consensus 137 l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~--~~~~~gp~~LIL~PTr 213 (545)
T PTZ00110 137 FPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPL--LRYGDGPIVLVLAPTR 213 (545)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--ccCCCCcEEEEECChH
Confidence 566555554 699999999999999998 79999999999999999999999988754211 0112467899999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+||.|+...+.++....++++..++|+.....+. ..+++|+|+||++| +.+.++...+. .+++|||||||+|+
T Consensus 214 eLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~---~v~~lViDEAd~ml 290 (545)
T PTZ00110 214 ELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLR---RVTYLVLDEADRML 290 (545)
T ss_pred HHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChh---hCcEEEeehHHhhh
Confidence 9999999999999888899999999987765332 35789999999997 66665544333 69999999999999
Q ss_pred C-CChHHHHHHHHHH
Q 007492 582 D-DRGPVIEALVART 595 (601)
Q Consensus 582 d-~rg~~le~iv~r~ 595 (601)
+ .+.+.+..|+..+
T Consensus 291 d~gf~~~i~~il~~~ 305 (545)
T PTZ00110 291 DMGFEPQIRKIVSQI 305 (545)
T ss_pred hcchHHHHHHHHHhC
Confidence 8 6788888887664
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=2.1e-23 Score=234.91 Aligned_cols=158 Identities=17% Similarity=0.252 Sum_probs=128.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..||+||.++||.++ .|.|++++||||||||++|++|+++.+.............+++|||+||++||.|++..+.
T Consensus 27 ~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 27 AGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 799999999999999998 7999999999999999999999999886531100011235799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
+++...+++|..++|+.....+. ..+++|||+||++| +.+.+.. .+.+ ..+++|||||||+|.+ .+...++.|
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l-~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSL-HACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccch-hheeeeEecCHHHHhhcchHHHHHHH
Confidence 99999999999999998765432 24689999999997 5544332 2222 2589999999999988 688888888
Q ss_pred HHHHHh
Q 007492 592 VARTLR 597 (601)
Q Consensus 592 v~r~~r 597 (601)
+.+++.
T Consensus 184 l~~lp~ 189 (572)
T PRK04537 184 LRRMPE 189 (572)
T ss_pred HHhccc
Confidence 887753
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.90 E-value=3e-23 Score=228.54 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=127.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++||.++ .++|++++||||||||++|++|+++.+....... ......++|||+||++||.|++..+.
T Consensus 19 ~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~-~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 19 QGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA-KGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc-ccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 799999999999999998 6899999999999999999999999886532110 01234689999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
.+....++++..++|+.+...+. ..+++|+|+||++| +.+..+...++ .+++|||||||+|.+ .+...+..+
T Consensus 97 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~---~v~~lViDEah~ll~~~~~~~i~~i 173 (456)
T PRK10590 97 DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLD---QVEILVLDEADRMLDMGFIHDIRRV 173 (456)
T ss_pred HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccc---cceEEEeecHHHHhccccHHHHHHH
Confidence 99988899999999998876442 25689999999997 55554443333 699999999999998 577778777
Q ss_pred HHHHH
Q 007492 592 VARTL 596 (601)
Q Consensus 592 v~r~~ 596 (601)
+.+++
T Consensus 174 l~~l~ 178 (456)
T PRK10590 174 LAKLP 178 (456)
T ss_pred HHhCC
Confidence 77654
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.90 E-value=2.8e-23 Score=229.07 Aligned_cols=150 Identities=21% Similarity=0.378 Sum_probs=126.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|||+|.+|+|.++ .|+|++++||||||||.+|++|+++.+... ....+++|++||++||.|+...+.
T Consensus 22 ~g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-------~~~~~~lil~PtreLa~Q~~~~~~ 93 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-------RFRVQALVLCPTRELADQVAKEIR 93 (460)
T ss_pred CCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------cCCceEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999998 799999999999999999999999988541 235689999999999999999998
Q ss_pred hhcCCC-CcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
.+.... +++|..++|+.+...+. ..+++|+||||++| +.+.++...+. .+++|||||||+|++ .++..++.
T Consensus 94 ~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~---~l~~lViDEad~~l~~g~~~~l~~ 170 (460)
T PRK11776 94 RLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLD---ALNTLVLDEADRMLDMGFQDAIDA 170 (460)
T ss_pred HHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHH---HCCEEEEECHHHHhCcCcHHHHHH
Confidence 877654 78999999998775432 35789999999998 55554443333 699999999999998 68899999
Q ss_pred HHHHHHh
Q 007492 591 LVARTLR 597 (601)
Q Consensus 591 iv~r~~r 597 (601)
++.+++.
T Consensus 171 i~~~~~~ 177 (460)
T PRK11776 171 IIRQAPA 177 (460)
T ss_pred HHHhCCc
Confidence 9888764
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=4.5e-23 Score=225.74 Aligned_cols=161 Identities=25% Similarity=0.358 Sum_probs=130.7
Q ss_pred HHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 429 DEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 429 ~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
++....++ .||..|+++|.++++.++ .|+|++++||||+|||++|++|+++.+...... .....++||++||++
T Consensus 9 ~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~---~~~~~~~lil~Pt~e 84 (434)
T PRK11192 9 DESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR---KSGPPRILILTPTRE 84 (434)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhcccc---CCCCceEEEECCcHH
Confidence 33333444 799999999999999998 689999999999999999999999988653111 123579999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 507 LAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 507 La~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
||.|+++.+..+....++.+..++|+.....+. ..+++|+|+||+++ +.+..+...+ ..+++|||||||+|.+
T Consensus 85 La~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~---~~v~~lViDEah~~l~ 161 (434)
T PRK11192 85 LAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDC---RAVETLILDEADRMLD 161 (434)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCc---ccCCEEEEECHHHHhC
Confidence 999999999999988999999999998765432 34689999999996 6555544333 2699999999999998
Q ss_pred -CChHHHHHHHHHHH
Q 007492 583 -DRGPVIEALVARTL 596 (601)
Q Consensus 583 -~rg~~le~iv~r~~ 596 (601)
.++..++.|...+.
T Consensus 162 ~~~~~~~~~i~~~~~ 176 (434)
T PRK11192 162 MGFAQDIETIAAETR 176 (434)
T ss_pred CCcHHHHHHHHHhCc
Confidence 68888888876554
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.7e-23 Score=229.35 Aligned_cols=152 Identities=23% Similarity=0.343 Sum_probs=130.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+|||.+++|.++ .|+|++++|+||||||.+|++|+++.+... . ......+|+++|||+||.|+++.+.
T Consensus 47 ~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~----~~~~~~aLil~PTRELA~Qi~~~~~ 120 (513)
T COG0513 47 LGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKS-V----ERKYVSALILAPTRELAVQIAEELR 120 (513)
T ss_pred cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhcc-c----ccCCCceEEECCCHHHHHHHHHHHH
Confidence 699999999999999999 689999999999999999999999997642 0 0111119999999999999999999
Q ss_pred hhcCCC-CcEEEEEeCCCccchhh--c-CCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRNE--L-EETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~~--~-~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
++.... ++++..++|+.+...+. + .+++|+|+||+++ |.+.++..++. .|+++|+||||.|+| .|.+.++.
T Consensus 121 ~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~---~v~~lVlDEADrmLd~Gf~~~i~~ 197 (513)
T COG0513 121 KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLS---GVETLVLDEADRMLDMGFIDDIEK 197 (513)
T ss_pred HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchh---hcCEEEeccHhhhhcCCCHHHHHH
Confidence 999888 79999999998876543 2 3599999999995 88888754444 699999999999999 78999999
Q ss_pred HHHHHHh
Q 007492 591 LVARTLR 597 (601)
Q Consensus 591 iv~r~~r 597 (601)
|+..++.
T Consensus 198 I~~~~p~ 204 (513)
T COG0513 198 ILKALPP 204 (513)
T ss_pred HHHhCCc
Confidence 9998873
No 17
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=6.4e-23 Score=236.88 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=126.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||+.|+++|.++++.++ .|+|++++||||||||++|++|+++.+.. ..+.++|||+||||||.|++..+.
T Consensus 32 ~g~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~--------~~~~~aL~l~PtraLa~q~~~~l~ 102 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALAD--------DPRATALYLAPTKALAADQLRAVR 102 (742)
T ss_pred cCCCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhh--------CCCcEEEEEcChHHHHHHHHHHHH
Confidence 689999999999999997 79999999999999999999999999865 246799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh--cCCccEEEEChhhHHH-HHccCC-CCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE--LEETQMIVTTPEKWDV-ITRKSS-DMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~--~~~~~IiVtTPekld~-l~r~~~-~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
++. ..++++..++|+.....+. ..+++|+||||+++.. +..... ...+...+++|||||+|.|.+.||..+..++
T Consensus 103 ~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il 181 (742)
T TIGR03817 103 ELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVL 181 (742)
T ss_pred Hhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHH
Confidence 876 4578999999998765432 3568999999999742 222111 1123457999999999999989999999999
Q ss_pred HHHHhh
Q 007492 593 ARTLRQ 598 (601)
Q Consensus 593 ~r~~r~ 598 (601)
.|+.+.
T Consensus 182 ~rL~ri 187 (742)
T TIGR03817 182 RRLRRL 187 (742)
T ss_pred HHHHHH
Confidence 988764
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=8.6e-23 Score=226.07 Aligned_cols=165 Identities=20% Similarity=0.289 Sum_probs=128.9
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|++....++ .||..|+++|.++++.++ .|+|++++||||||||++|++|+++.+..............++|||+||+
T Consensus 94 l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptr 172 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTR 172 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcH
Confidence 444444443 699999999999999988 79999999999999999999999999876321111111257999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh--h--cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCccc
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN--E--LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~--~--~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
+||.|+++.+..+.+..++.+..++|+.....+ . ...++|+|+||++| +.+.+.... ...+++|||||+|.+
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~---l~~l~~lViDEah~l 249 (475)
T PRK01297 173 ELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVH---LDMVEVMVLDEADRM 249 (475)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcc---cccCceEEechHHHH
Confidence 999999999999988889999999998765433 1 24689999999997 444433322 336999999999999
Q ss_pred CC-CChHHHHHHHHHHH
Q 007492 581 ND-DRGPVIEALVARTL 596 (601)
Q Consensus 581 ~d-~rg~~le~iv~r~~ 596 (601)
.+ .+.+.+..|+..++
T Consensus 250 ~~~~~~~~l~~i~~~~~ 266 (475)
T PRK01297 250 LDMGFIPQVRQIIRQTP 266 (475)
T ss_pred HhcccHHHHHHHHHhCC
Confidence 87 57777777776553
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.7e-23 Score=220.11 Aligned_cols=156 Identities=20% Similarity=0.312 Sum_probs=135.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+|||..+||.++ -|+++..||.||||||.+|++|+|.++.... ......+|||++|||+|+.|++..+.
T Consensus 199 lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----k~~~~TRVLVL~PTRELaiQv~sV~~ 273 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----KKVAATRVLVLVPTRELAIQVHSVTK 273 (691)
T ss_pred cCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc----ccCcceeEEEEeccHHHHHHHHHHHH
Confidence 699999999999999998 7999999999999999999999999987632 22456799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
++.....|.|+.+.|+.++..++ ...++|+|+||++|--+.+++..+.+. .+..||+||||+|++ .|...+..|+
T Consensus 274 qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ld-siEVLvlDEADRMLeegFademnEii 352 (691)
T KOG0338|consen 274 QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLD-SIEVLVLDEADRMLEEGFADEMNEII 352 (691)
T ss_pred HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCcccc-ceeEEEechHHHHHHHHHHHHHHHHH
Confidence 98888889999999999987664 368999999999985566666666655 499999999999998 7889999999
Q ss_pred HHHHhh
Q 007492 593 ARTLRQ 598 (601)
Q Consensus 593 ~r~~r~ 598 (601)
..+++.
T Consensus 353 ~lcpk~ 358 (691)
T KOG0338|consen 353 RLCPKN 358 (691)
T ss_pred Hhcccc
Confidence 877653
No 20
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.89 E-value=4.8e-23 Score=234.03 Aligned_cols=170 Identities=26% Similarity=0.405 Sum_probs=144.1
Q ss_pred hhhhHHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 425 IKELDEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 425 i~~L~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
++.|+++.+..| ..|.+||+.|..+||.++ .|+|+||+||||||||.+|.||++..|.... +....++..+|||+|
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYIsP 81 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLG--KGKLEDGIYALYISP 81 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhcc--CCCCCCceEEEEeCc
Confidence 456788888888 458999999999999998 8999999999999999999999999998742 122235789999999
Q ss_pred ChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCccc
Q 007492 504 MKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 504 traLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
.|||..++.+++...+..+|+.|..-|||++-..++ .+-+||+|||||.+..+........++..|+++||||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 999999999999999999999999999999876443 35699999999999766654333345557999999999999
Q ss_pred CC-CChHHHHHHHHHHHh
Q 007492 581 ND-DRGPVIEALVARTLR 597 (601)
Q Consensus 581 ~d-~rg~~le~iv~r~~r 597 (601)
.+ .||..+-.-+.|+.+
T Consensus 162 ~~sKRG~~Lsl~LeRL~~ 179 (814)
T COG1201 162 AESKRGVQLALSLERLRE 179 (814)
T ss_pred hccccchhhhhhHHHHHh
Confidence 86 899999998888765
No 21
>PRK01172 ski2-like helicase; Provisional
Probab=99.88 E-value=1.9e-22 Score=232.29 Aligned_cols=154 Identities=29% Similarity=0.454 Sum_probs=128.9
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||+.....+ .+|+ |+++|.++++.+. +++|++++||||||||++|.+++++.+.. +.++|||+|++
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~----------~~k~v~i~P~r 75 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA----------GLKSIYIVPLR 75 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh----------CCcEEEEechH
Confidence 344444444 4564 9999999999975 79999999999999999999999987753 46899999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
+||.|+++.|.+ +...|++|..++|+.......+..++|+|+||++|+.+.+++. .+.+.+++|||||+|++.+ .|
T Consensus 76 aLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~r 152 (674)
T PRK01172 76 SLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDR 152 (674)
T ss_pred HHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCc
Confidence 999999999987 4467899999999987666566789999999999988887653 2344699999999999987 79
Q ss_pred hHHHHHHHHHHH
Q 007492 585 GPVIEALVARTL 596 (601)
Q Consensus 585 g~~le~iv~r~~ 596 (601)
|+.++.+++++.
T Consensus 153 g~~le~ll~~~~ 164 (674)
T PRK01172 153 GPTLETVLSSAR 164 (674)
T ss_pred cHHHHHHHHHHH
Confidence 999999988764
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=214.01 Aligned_cols=155 Identities=18% Similarity=0.295 Sum_probs=127.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
+++..||.+|.++||.++ .|+|++|.|+||||||++|++|+++.|... ....-..+|..+|||||||+||.|+|+.++
T Consensus 155 m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m-~~ki~Rs~G~~ALVivPTREL~~Q~y~~~q 232 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAM-EPKIQRSDGPYALVIVPTRELALQIYETVQ 232 (708)
T ss_pred hccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhc-CccccccCCceEEEEechHHHHHHHHHHHH
Confidence 689999999999999999 699999999999999999999999988653 333335678999999999999999999999
Q ss_pred hhcCCCC-cEEEEEeCCCccch---hhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPLN-MIVRELTGDMQLSR---NELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~~-i~V~~l~Gd~~~~~---~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
++++++. |..+.+.|+..... +...+++|+|+||+++ |.+. ....+.+. ++++||+||+|+|++ .|+..+..
T Consensus 233 KLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLk-nT~~i~~s-~LRwlVlDEaDrlleLGfekdit~ 310 (708)
T KOG0348|consen 233 KLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLK-NTKSIKFS-RLRWLVLDEADRLLELGFEKDITQ 310 (708)
T ss_pred HHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHh-ccchheee-eeeEEEecchhHHHhccchhhHHH
Confidence 9999874 45566777765432 2346899999999997 5544 33334444 499999999999999 89999999
Q ss_pred HHHHH
Q 007492 591 LVART 595 (601)
Q Consensus 591 iv~r~ 595 (601)
|+.-+
T Consensus 311 Il~~v 315 (708)
T KOG0348|consen 311 ILKAV 315 (708)
T ss_pred HHHHH
Confidence 88766
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.88 E-value=4.1e-22 Score=226.16 Aligned_cols=150 Identities=23% Similarity=0.342 Sum_probs=126.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+|+|.++||.++ .++|+|++||||||||.+|++|+++.+... ...+++|||+||++||.|++..+.
T Consensus 24 ~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~-------~~~~~~LIL~PTreLa~Qv~~~l~ 95 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-------LKAPQILVLAPTRELAVQVAEAMT 95 (629)
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-------cCCCeEEEEeCcHHHHHHHHHHHH
Confidence 699999999999999998 789999999999999999999999987542 245799999999999999999998
Q ss_pred hhcCCC-CcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
++.... ++.+..++|+.+...+. ..+++|||+||+++ +.+.++...++ .+++|||||||.|++ .+...++.
T Consensus 96 ~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~---~l~~lVlDEAd~ml~~gf~~di~~ 172 (629)
T PRK11634 96 DFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLS---KLSGLVLDEADEMLRMGFIEDVET 172 (629)
T ss_pred HHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchh---hceEEEeccHHHHhhcccHHHHHH
Confidence 887665 78999999988765332 24689999999996 77766554443 699999999999987 67788888
Q ss_pred HHHHHHh
Q 007492 591 LVARTLR 597 (601)
Q Consensus 591 iv~r~~r 597 (601)
|+..++.
T Consensus 173 Il~~lp~ 179 (629)
T PRK11634 173 IMAQIPE 179 (629)
T ss_pred HHHhCCC
Confidence 8877653
No 24
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=4.1e-22 Score=234.32 Aligned_cols=170 Identities=26% Similarity=0.419 Sum_probs=130.9
Q ss_pred hhHHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 427 ELDEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 427 ~L~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
.|++..+..| .+|..|+|+|.+++|.++ .|+|++++||||||||.+|++|+++.+......+.. ..+.++|||+|+|
T Consensus 17 ~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~-~~~~~~LyIsPtr 94 (876)
T PRK13767 17 LLRPYVREWFKEKFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGEL-EDKVYCLYVSPLR 94 (876)
T ss_pred hcCHHHHHHHHHccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCC-CCCeEEEEEcCHH
Confidence 3455455545 467899999999999987 799999999999999999999999988653211111 2467899999999
Q ss_pred hHHHHHHHHHHhhc-----------CCC-CcEEEEEeCCCccchhh---cCCccEEEEChhhHHHHHccCCCCCccCCcc
Q 007492 506 ALAAEVTRTFSSRL-----------SPL-NMIVRELTGDMQLSRNE---LEETQMIVTTPEKWDVITRKSSDMSLSMLVK 570 (601)
Q Consensus 506 aLa~Q~~~~~~~~l-----------~~~-~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~l~r~~~~~~~~~~v~ 570 (601)
||+.|+++++...+ ... +++|..++||.....+. ...++|+||||++|..+............++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 99999998765322 233 78899999998765432 2468999999999976664432222345699
Q ss_pred EEEeccCcccCC-CChHHHHHHHHHHHhh
Q 007492 571 LLIIDEVHLLND-DRGPVIEALVARTLRQ 598 (601)
Q Consensus 571 llIiDEaH~l~d-~rg~~le~iv~r~~r~ 598 (601)
+|||||+|.|.+ .||..++.++.|+.+.
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 999999999996 7999999999987754
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.4e-22 Score=216.15 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=131.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhccc--CCCCC-CCcEEEEEccChhHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD--GYLHK-DEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~--~~~~~-~~~kvl~laPtraLa~Q~~~ 513 (601)
.||..|||+|..++|.+. .|+++++|||||||||.+|++|++..+...... +.... ..+++++++|||+||.|++.
T Consensus 92 ~~~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred ccccCCCcceeeccceee-cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 689999999999999986 799999999999999999999999998765321 11111 35899999999999999999
Q ss_pred HHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC--CChHH
Q 007492 514 TFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND--DRGPV 587 (601)
Q Consensus 514 ~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d--~rg~~ 587 (601)
+..+.....+++++..+|+.++..+. ..+++|+||||++| +++.++...+. .++++|+||||.|+| .|+|.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~---~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLD---NCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehh---hCcEEEecchHHhhhhcccccc
Confidence 99998888899999999997765432 35899999999997 77777765554 589999999999999 69999
Q ss_pred HHHHHHHH
Q 007492 588 IEALVART 595 (601)
Q Consensus 588 le~iv~r~ 595 (601)
++.|+.++
T Consensus 248 Ir~iv~~~ 255 (482)
T KOG0335|consen 248 IRKIVEQL 255 (482)
T ss_pred HHHHhccc
Confidence 99998764
No 26
>PTZ00424 helicase 45; Provisional
Probab=99.87 E-value=2e-21 Score=210.18 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=120.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+.|++++||||||||.+|++++++.+... ..+.++|||+|+++||.|+...+.
T Consensus 46 ~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-------~~~~~~lil~Pt~~L~~Q~~~~~~ 117 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDYD-------LNACQALILAPTRELAQQIQKVVL 117 (401)
T ss_pred cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcCC-------CCCceEEEECCCHHHHHHHHHHHH
Confidence 589999999999999998 689999999999999999999999887531 246789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
......++.+..++|+...... ...+++|+|+||+++ +.+.++... ...+++|||||+|++.+ .++..+..+
T Consensus 118 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~---l~~i~lvViDEah~~~~~~~~~~~~~i 194 (401)
T PTZ00424 118 ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLR---VDDLKLFILDEADEMLSRGFKGQIYDV 194 (401)
T ss_pred HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcc---cccccEEEEecHHHHHhcchHHHHHHH
Confidence 8888788888888998765432 234689999999996 555544332 23699999999999986 566666666
Q ss_pred HHHH
Q 007492 592 VART 595 (601)
Q Consensus 592 v~r~ 595 (601)
+.++
T Consensus 195 ~~~~ 198 (401)
T PTZ00424 195 FKKL 198 (401)
T ss_pred HhhC
Confidence 5554
No 27
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.86 E-value=5.7e-22 Score=208.54 Aligned_cols=164 Identities=18% Similarity=0.293 Sum_probs=136.9
Q ss_pred HHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 430 EFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 430 ~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
+....++ +||.++|++|+++++.++ .|+|+++.|.||+|||++|++|+++.+.+... ....+..+|||||||+|
T Consensus 91 ~~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~---~~r~~~~vlIi~PTREL 166 (543)
T KOG0342|consen 91 PLTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF---KPRNGTGVLIICPTREL 166 (543)
T ss_pred HHHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhccc---CCCCCeeEEEecccHHH
Confidence 3334444 799999999999999998 78999999999999999999999998876432 23467899999999999
Q ss_pred HHHHHHHHHhhcCCC-CcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 508 AAEVTRTFSSRLSPL-NMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~-~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
|.|++.+.+++++.. ++.|..+.|+...... ...+++|+|+||++| |.+.+... + +++.++++|+||||+|+|
T Consensus 167 A~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f-~~r~~k~lvlDEADrlLd 244 (543)
T KOG0342|consen 167 AMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-F-LFRNLKCLVLDEADRLLD 244 (543)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-c-hhhccceeEeecchhhhh
Confidence 999999999999987 8999999999886532 235899999999997 55554433 3 344689999999999999
Q ss_pred -CChHHHHHHHHHHHhhh
Q 007492 583 -DRGPVIEALVARTLRQV 599 (601)
Q Consensus 583 -~rg~~le~iv~r~~r~~ 599 (601)
.|...++.|+.-++++.
T Consensus 245 ~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 245 IGFEEDVEQIIKILPKQR 262 (543)
T ss_pred cccHHHHHHHHHhccccc
Confidence 79999999999888764
No 28
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.86 E-value=3.6e-22 Score=211.73 Aligned_cols=157 Identities=16% Similarity=0.268 Sum_probs=136.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.+|..++.||+.+||.++ .|+++|..|.||||||++|++|+|..+...... ..+|.-+|||.|||+||.|++..+.
T Consensus 87 ~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs---~~DGlGalIISPTRELA~QtFevL~ 162 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS---PTDGLGALIISPTRELALQTFEVLN 162 (758)
T ss_pred cCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCC---CCCCceeEEecchHHHHHHHHHHHH
Confidence 578899999999999999 799999999999999999999999998764332 2467889999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccch--hhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSR--NELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVA 593 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~--~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~ 593 (601)
+..+..++..+.+.|+..+.. ..+.+.+|+||||++|-.+......++-. .+.+||+||||+|+| .|...++.||+
T Consensus 163 kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~-~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 163 KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTS-NLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCC-cceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 999999999999999988653 45688999999999975555555555544 499999999999999 68999999999
Q ss_pred HHHhh
Q 007492 594 RTLRQ 598 (601)
Q Consensus 594 r~~r~ 598 (601)
.++..
T Consensus 242 ~lP~~ 246 (758)
T KOG0343|consen 242 NLPKK 246 (758)
T ss_pred hCChh
Confidence 88753
No 29
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.86 E-value=5.7e-21 Score=187.18 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=124.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+..|+++|.++++.++ .++|++++||||+|||.+|+++++..+.... ...+++++|++|+++|+.|+...+.
T Consensus 17 ~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----~~~~~~viii~p~~~L~~q~~~~~~ 90 (203)
T cd00268 17 LGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----KKDGPQALILAPTRELALQIAEVAR 90 (203)
T ss_pred cCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----ccCCceEEEEcCCHHHHHHHHHHHH
Confidence 588999999999999998 5999999999999999999999999887621 1246899999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh--hc-CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN--EL-EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~--~~-~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
.+....++.+..++|+...... .. .+++|+||||++|..+..+.. .. .+.++++|+||+|.+.+ .++..+..++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~-~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 91 KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LD-LSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CC-hhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 9888888999999998875432 22 378999999999744443332 22 23589999999999976 5788888887
Q ss_pred HHHH
Q 007492 593 ARTL 596 (601)
Q Consensus 593 ~r~~ 596 (601)
.++.
T Consensus 169 ~~l~ 172 (203)
T cd00268 169 KLLP 172 (203)
T ss_pred HhCC
Confidence 7654
No 30
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=198.42 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=134.8
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|-+|+-... .|++.|||+|..|+|.++ .|+|+|.||.||||||.+|.+|+++++..+ ..+.-++++.|||
T Consensus 14 l~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsed-------P~giFalvlTPTr 85 (442)
T KOG0340|consen 14 LSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSED-------PYGIFALVLTPTR 85 (442)
T ss_pred ccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccC-------CCcceEEEecchH
Confidence 456664443 689999999999999999 799999999999999999999999999874 4677899999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhHHHHHccC-CCC-CccCCccEEEeccCccc
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKWDVITRKS-SDM-SLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekld~l~r~~-~~~-~~~~~v~llIiDEaH~l 580 (601)
+||.|+.++|....+.++++++.+.|++..-.+ ...++||+|+||+++..+.+.+ .+. ...++++++|+||||.+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 999999999999999999999999999886433 2368999999999984444444 322 23456999999999999
Q ss_pred CC-CChHHHHHHHHHHH
Q 007492 581 ND-DRGPVIEALVARTL 596 (601)
Q Consensus 581 ~d-~rg~~le~iv~r~~ 596 (601)
++ .|-..++.|.+-+|
T Consensus 166 L~~~f~d~L~~i~e~lP 182 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLP 182 (442)
T ss_pred hccchhhHHhhhhccCC
Confidence 87 78888888776554
No 31
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.85 E-value=7.8e-21 Score=179.99 Aligned_cols=143 Identities=25% Similarity=0.456 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCC
Q 007492 443 NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL 522 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~ 522 (601)
||+|.++++.++ ++++++++||||+|||.++++++++.+... ...+++|++|+++|+.|++..+.+++...
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~--------~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG--------KDARVLIIVPTRALAEQQFERLRKFFSNT 71 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--------SSSEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC--------CCceEEEEeeccccccccccccccccccc
Confidence 689999999998 799999999999999999999999988762 24599999999999999999999999888
Q ss_pred CcEEEEEeCCCccchh---hc-CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHH
Q 007492 523 NMIVRELTGDMQLSRN---EL-EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 596 (601)
Q Consensus 523 ~i~V~~l~Gd~~~~~~---~~-~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~ 596 (601)
++++..++|+...... .+ .+++|+|+||+++..+.+... ..+.+ +++|||||+|.+.+ .++..+..|+.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~-~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK-INISR-LSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS-STGTT-ESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred ccccccccccccccccccccccccccccccCcchhhccccccc-ccccc-ceeeccCcccccccccHHHHHHHHHHHhc
Confidence 8999999998875422 22 479999999999744444321 23444 99999999999987 67787888777653
No 32
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.2e-21 Score=206.05 Aligned_cols=137 Identities=28% Similarity=0.411 Sum_probs=115.9
Q ss_pred cCCCCCcHHHHHHHHHHHhc--------CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT--------NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA 508 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~--------~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa 508 (601)
+++..++|+|+.++|.++.. ++|+.|.||||||||++|.+||++.+.+. ..+..++|||+||++|+
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R------~v~~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR------PVKRLRAVVIVPTRELA 228 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC------CccceEEEEEeeHHHHH
Confidence 56789999999999998643 67999999999999999999999999763 12468999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCccchhh--c------CCccEEEEChhhH-HHHH-ccCCCCCccCCccEEEeccCc
Q 007492 509 AEVTRTFSSRLSPLNMIVRELTGDMQLSRNE--L------EETQMIVTTPEKW-DVIT-RKSSDMSLSMLVKLLIIDEVH 578 (601)
Q Consensus 509 ~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~--~------~~~~IiVtTPekl-d~l~-r~~~~~~~~~~v~llIiDEaH 578 (601)
.|++..|.++..+.|+.|+.++|..++.... + ...+|+|+||++| |.+. .++.++. +++++||||||
T Consensus 229 ~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk---~LrfLVIDEAD 305 (620)
T KOG0350|consen 229 LQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLK---HLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchh---hceEEEechHH
Confidence 9999999999999999999999988876432 1 2469999999997 6665 3333433 69999999999
Q ss_pred ccCC
Q 007492 579 LLND 582 (601)
Q Consensus 579 ~l~d 582 (601)
+|++
T Consensus 306 Rll~ 309 (620)
T KOG0350|consen 306 RLLD 309 (620)
T ss_pred HHHH
Confidence 9997
No 33
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.3e-21 Score=207.44 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=129.7
Q ss_pred hcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccC----CCCCCCcE--EEEEccChhHHH
Q 007492 436 FHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDG----YLHKDEFK--IVYVAPMKALAA 509 (601)
Q Consensus 436 f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~----~~~~~~~k--vl~laPtraLa~ 509 (601)
+.||..|++||+.++|+|.....|+|..|.||||||++|-+||++++.+..... ..+..+++ +||++|||+||-
T Consensus 198 ~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~ 277 (731)
T KOG0347|consen 198 NLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAH 277 (731)
T ss_pred hcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHH
Confidence 489999999999999999965589999999999999999999999765432210 01122344 999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhh-HHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 510 Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
|+...+.......+++|..++|++...+++ ...++|+|+||++ |.++......+.-+..|++||+||+|+|.. ..
T Consensus 278 QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 278 QVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 999999999999999999999999987765 2579999999999 788776654333334699999999999997 44
Q ss_pred hHHHHHHHHHHH
Q 007492 585 GPVIEALVARTL 596 (601)
Q Consensus 585 g~~le~iv~r~~ 596 (601)
-..+..|+..+.
T Consensus 358 F~Els~lL~~L~ 369 (731)
T KOG0347|consen 358 FEELSKLLKHLN 369 (731)
T ss_pred HHHHHHHHHHhh
Confidence 456666665554
No 34
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6e-21 Score=200.67 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=133.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
-|..|+|+|.+++|.++ +|++++..|.||||||.+|+.|++-++...-. .....++..||+||||+||.|++.++++
T Consensus 242 Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~e--L~~g~gPi~vilvPTrela~Qi~~eaKk 318 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE--LKPGEGPIGVILVPTRELASQIFSEAKK 318 (731)
T ss_pred hcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhh--hcCCCCCeEEEEeccHHHHHHHHHHHHH
Confidence 47899999999999998 89999999999999999999999988865311 1124688999999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+.+.+|+++.+++|+.+.+.+. -.++.||||||+++ |.+..+..++. +|.+|||||+++|.+ .|.+.+.+|.
T Consensus 319 f~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~---rvS~LV~DEadrmfdmGfe~qVrSI~ 395 (731)
T KOG0339|consen 319 FGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLS---RVSYLVLDEADRMFDMGFEPQVRSIK 395 (731)
T ss_pred hhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccce---eeeEEEEechhhhhccccHHHHHHHH
Confidence 9999999999999999987553 26899999999995 88888887766 799999999999998 7889998887
Q ss_pred HHH
Q 007492 593 ART 595 (601)
Q Consensus 593 ~r~ 595 (601)
..+
T Consensus 396 ~hi 398 (731)
T KOG0339|consen 396 QHI 398 (731)
T ss_pred hhc
Confidence 543
No 35
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.1e-21 Score=196.32 Aligned_cols=159 Identities=25% Similarity=0.405 Sum_probs=141.2
Q ss_pred HHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 429 DEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 429 ~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
+++....| .||+.|.|+|.++||.|+ +|+|+|+.|..|+|||.+|++|+|..+.. .....++++++|||+|
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~-------~~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDP-------KKNVIQAIILVPTREL 165 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCc-------cccceeEEEEeecchh
Confidence 45555566 799999999999999999 89999999999999999999999998865 3467899999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCccchhhc---CCccEEEEChhh-HHHHHccCCCCCccCCccEEEeccCcccCC-
Q 007492 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLSRNEL---EETQMIVTTPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND- 582 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~---~~~~IiVtTPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d- 582 (601)
|.|+.+.+....+.+|++|...||++++....+ ...|++|+||++ +|.+.++-.+++ .+.++|+||||.|++
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls---~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLS---DCVILVMDEADKLLSV 242 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccch---hceEEEechhhhhhch
Confidence 999999999999999999999999999876543 579999999999 587777766666 689999999999998
Q ss_pred CChHHHHHHHHHHHhh
Q 007492 583 DRGPVIEALVARTLRQ 598 (601)
Q Consensus 583 ~rg~~le~iv~r~~r~ 598 (601)
+|++.++.++..+|+.
T Consensus 243 ~F~~~~e~li~~lP~~ 258 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKE 258 (459)
T ss_pred hhhhHHHHHHHhCCcc
Confidence 9999999999988763
No 36
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.83 E-value=4.4e-20 Score=214.67 Aligned_cols=155 Identities=23% Similarity=0.356 Sum_probs=135.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|...|+++|.+|+..+. .|+|++|++|||||||.+|++||++.+.+. ...++|||.||+|||+.+..+|.
T Consensus 66 ~g~~~lY~HQ~~A~~~~~-~G~~vvVtTgTgSGKTe~FllPIld~~l~~--------~~a~AL~lYPtnALa~DQ~~rl~ 136 (851)
T COG1205 66 AGIERLYSHQVDALRLIR-EGRNVVVTTGTGSGKTESFLLPILDHLLRD--------PSARALLLYPTNALANDQAERLR 136 (851)
T ss_pred hccccccHHHHHHHHHHH-CCCCEEEECCCCCchhHHHHHHHHHHHhhC--------cCccEEEEechhhhHhhHHHHHH
Confidence 577779999999999987 799999999999999999999999999872 45699999999999999999999
Q ss_pred hhcCCCC--cEEEEEeCCCccchhh---cCCccEEEEChhhHHH-HHccCC-CCCccCCccEEEeccCcccCCCChHHHH
Q 007492 517 SRLSPLN--MIVRELTGDMQLSRNE---LEETQMIVTTPEKWDV-ITRKSS-DMSLSMLVKLLIIDEVHLLNDDRGPVIE 589 (601)
Q Consensus 517 ~~l~~~~--i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~-l~r~~~-~~~~~~~v~llIiDEaH~l~d~rg~~le 589 (601)
++....+ +.+..++||+...+.+ .+.++||+|||.+|+. +.+... -+.+...+++||+||+|-+.+-+|..+-
T Consensus 137 ~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 137 ELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred HHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHH
Confidence 9998776 8899999999988763 4789999999999977 444432 2334556999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 007492 590 ALVARTLRQVY 600 (601)
Q Consensus 590 ~iv~r~~r~~e 600 (601)
.++.|+++.++
T Consensus 217 ~llRRL~~~~~ 227 (851)
T COG1205 217 LLLRRLLRRLR 227 (851)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 37
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.7e-20 Score=194.78 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=125.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..||-||+.+||.++ .|.|++..|.||||||.+|++|+++.|......+ ....++.+++++|||+||+|++..+.
T Consensus 37 lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~iLvPTkEL~qQvy~vie 114 (569)
T KOG0346|consen 37 LGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAVILVPTKELAQQVYKVIE 114 (569)
T ss_pred hCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeEEEechHHHHHHHHHHHH
Confidence 799999999999999999 6899999999999999999999999998754433 33468899999999999999999998
Q ss_pred hhcCCCC--cEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHH
Q 007492 517 SRLSPLN--MIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIE 589 (601)
Q Consensus 517 ~~l~~~~--i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le 589 (601)
++....+ +++.-++.+++-+.. ....++|+|+||.++ ..+..+.. .+...+.++|+||||+++. ++...+.
T Consensus 115 kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEADLllsfGYeedlk 192 (569)
T KOG0346|consen 115 KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEADLLLSFGYEEDLK 192 (569)
T ss_pred HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhhhhhhcccHHHHH
Confidence 8766543 555666655554322 235799999999996 44444432 3445799999999999998 5667888
Q ss_pred HHHHHHHhh
Q 007492 590 ALVARTLRQ 598 (601)
Q Consensus 590 ~iv~r~~r~ 598 (601)
.|...+||.
T Consensus 193 ~l~~~LPr~ 201 (569)
T KOG0346|consen 193 KLRSHLPRI 201 (569)
T ss_pred HHHHhCCch
Confidence 887777764
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.82 E-value=8.4e-19 Score=203.56 Aligned_cols=152 Identities=22% Similarity=0.320 Sum_probs=117.1
Q ss_pred cccchhhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEE
Q 007492 421 KLIEIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVY 500 (601)
Q Consensus 421 ~l~~i~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~ 500 (601)
.+.+...|....+..| ||..|+|+|.++|++++ .|+|++++||||+|||++|++|++.. +..+||
T Consensus 441 ~fpw~~~L~~~lk~~F-G~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~-------------~GiTLV 505 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVF-GNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC-------------PGITLV 505 (1195)
T ss_pred CCCchHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc-------------CCcEEE
Confidence 3444556666666666 99999999999999998 79999999999999999999999852 357999
Q ss_pred EccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---------cCCccEEEEChhhH---HHHHccCCCCCccCC
Q 007492 501 VAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---------LEETQMIVTTPEKW---DVITRKSSDMSLSML 568 (601)
Q Consensus 501 laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---------~~~~~IiVtTPekl---d~l~r~~~~~~~~~~ 568 (601)
|+|+++|+.+++..+.. .|+.+..+.|+.....+. ....+||++|||+| +.+.+....+.....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999987777654 588999999988754321 14689999999997 334433222222235
Q ss_pred ccEEEeccCcccCC---CChHHHHHH
Q 007492 569 VKLLIIDEVHLLND---DRGPVIEAL 591 (601)
Q Consensus 569 v~llIiDEaH~l~d---~rg~~le~i 591 (601)
+.+|||||||++.+ +|.+.+..+
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHH
Confidence 88999999999986 577777653
No 39
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.82 E-value=6.4e-20 Score=193.95 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=134.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcc--cCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFR--DGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~--~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.||+.|+|||.+++|..+ .++|+|..|.||||||.+|++|++..|..-.. ...-...++++++++|||+||+||..+
T Consensus 263 ~~y~eptpIqR~aipl~l-Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGL-QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchh-ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 699999999999999887 79999999999999999999999998876321 111123589999999999999999999
Q ss_pred HHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHH
Q 007492 515 FSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIE 589 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le 589 (601)
-.+++.++|+++..+.|+.+...+ ...+|+|+|+||++| |.+.+....+. .+.++|+|||+.|.| .|.+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~---qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLN---QCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhc---cCceEeccchhhhhcccccHHHH
Confidence 999999999999999999998765 346899999999996 77777664443 589999999999999 7999999
Q ss_pred HHHHHHH
Q 007492 590 ALVARTL 596 (601)
Q Consensus 590 ~iv~r~~ 596 (601)
.|++.++
T Consensus 419 ~iL~~mP 425 (673)
T KOG0333|consen 419 KILEQMP 425 (673)
T ss_pred HHHHhCC
Confidence 9998876
No 40
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.81 E-value=1.4e-19 Score=192.93 Aligned_cols=202 Identities=25% Similarity=0.360 Sum_probs=158.2
Q ss_pred CCCccccccCCCCCccccCCcchhhcccCCcceEecCCCCCCCCCCCccccchhhhHHHHHHHh--cCCCCCcHHHHHHH
Q 007492 373 NPLDGLIGSGQGSMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAF--HGYKSLNRIQSRIF 450 (601)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~e~~vp~~~~~~~~~~~~l~~i~~L~~~~~~~f--~g~~~l~~iQ~~~i 450 (601)
.++|+++..-++.|.+..=|+-+ .|+++.-.+....+.+..+ -++|+-++..+ .|++.|.|+|..++
T Consensus 157 rdlDkvl~ml~p~fdP~~~pE~T------ryD~v~a~~~~~~r~~vde-----Ldipe~fk~~lk~~G~~eLlPVQ~laV 225 (830)
T COG1202 157 RDLDKVLEMLDPRFDPLEDPELT------RYDEVTAETDEVERVPVDE-----LDIPEKFKRMLKREGIEELLPVQVLAV 225 (830)
T ss_pred ccHHHHHHHhCccCCcccCcccc------cceeeeccccccccccccc-----cCCcHHHHHHHHhcCcceecchhhhhh
Confidence 35666655545556665556544 3566553322222222211 13466666666 78999999999999
Q ss_pred HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEe
Q 007492 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELT 530 (601)
Q Consensus 451 ~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~ 530 (601)
.+.+-.|+|++|.++|+||||+++.++-+..+.. .+.|.+|++|..|||+|-+..|..+..++|++|..-.
T Consensus 226 e~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairV 296 (830)
T COG1202 226 EAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRV 296 (830)
T ss_pred hhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEe
Confidence 9988789999999999999999999998888765 5789999999999999999999999999999998888
Q ss_pred CCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHHh
Q 007492 531 GDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLR 597 (601)
Q Consensus 531 Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~r 597 (601)
|-..+.... ...++|||+|+|-+|.+.|...++. .|..+||||+|.|.| +||+-+.-++.|+.+
T Consensus 297 G~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg---diGtVVIDEiHtL~deERG~RLdGLI~RLr~ 368 (830)
T COG1202 297 GMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLG---DIGTVVIDEIHTLEDEERGPRLDGLIGRLRY 368 (830)
T ss_pred chhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCccc---ccceEEeeeeeeccchhcccchhhHHHHHHH
Confidence 865554332 2479999999999999998775544 799999999999998 899999999999764
No 41
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.7e-19 Score=204.65 Aligned_cols=156 Identities=22% Similarity=0.323 Sum_probs=131.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..+++||.+|||+++ +|+++|.+|.||||||++|+||+++++...... -...++.+||+||||+||.||++.+.
T Consensus 383 l~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~--~~gdGPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL--EEGDGPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred hcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCCh--hhCCCceEEEEcCCHHHHHHHHHHHH
Confidence 589999999999999998 899999999999999999999999877653321 12258999999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhh-HHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
++++.+++++.+++|+...+.+. -.++.|+||||++ +|+++.....+.-..++.++|+||+|+|.| .|.|.+-.|
T Consensus 460 kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 460 KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 99999999999999998887553 2569999999999 588887776555344577999999999998 566776666
Q ss_pred HHHH
Q 007492 592 VART 595 (601)
Q Consensus 592 v~r~ 595 (601)
|.++
T Consensus 540 i~nl 543 (997)
T KOG0334|consen 540 LQNL 543 (997)
T ss_pred Hhhc
Confidence 6543
No 42
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=8.9e-19 Score=180.37 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=126.2
Q ss_pred hhHHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 427 ELDEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 427 ~L~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
.-|++....- .||..|+||||+++|.++ +|.+++..|.||+|||++|++|-+-++...... .-...++.+|+++||+
T Consensus 227 ~~pevmenIkK~GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~-~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 227 CYPEVMENIKKTGFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR-REQRNGPGVLVLTPTR 304 (629)
T ss_pred hhHHHHHHHHhccCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccchh-hhccCCCceEEEeccH
Confidence 4455554444 699999999999999998 799999999999999999999977665432211 1134678999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+|+.|+.....++ ...|.+..+++|+-+...+ ...++.||++||++| |+......++. .+.+||+||||+|+
T Consensus 305 eLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~---siTYlVlDEADrML 380 (629)
T KOG0336|consen 305 ELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLA---SITYLVLDEADRML 380 (629)
T ss_pred HHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeee---eeEEEEecchhhhh
Confidence 9999999887664 3457777778876655433 235799999999998 66666656655 68999999999999
Q ss_pred C-CChHHHHHHHH
Q 007492 582 D-DRGPVIEALVA 593 (601)
Q Consensus 582 d-~rg~~le~iv~ 593 (601)
| .|.|.+..|+-
T Consensus 381 DMgFEpqIrkill 393 (629)
T KOG0336|consen 381 DMGFEPQIRKILL 393 (629)
T ss_pred cccccHHHHHHhh
Confidence 9 68999887763
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=2.7e-18 Score=189.92 Aligned_cols=140 Identities=20% Similarity=0.319 Sum_probs=105.0
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 433 QAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 433 ~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
+..| ||..|+|+|.+++++++ .|+|++++||||||||++|++|++. .+..+|||+|+++|+.|++
T Consensus 4 ~~~~-g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~-------------~~~~~lVi~P~~~L~~dq~ 68 (470)
T TIGR00614 4 KTVF-GLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALC-------------SDGITLVISPLISLMEDQV 68 (470)
T ss_pred Hhhc-CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHH-------------cCCcEEEEecHHHHHHHHH
Confidence 3345 99999999999999998 6889999999999999999999875 1347899999999999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccchh-------hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC---
Q 007492 513 RTFSSRLSPLNMIVRELTGDMQLSRN-------ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND--- 582 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~Gd~~~~~~-------~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d--- 582 (601)
..+.. .|+.+..++|+...... .....+|+++||+++....+-...+.....+++|||||||++.+
T Consensus 69 ~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~ 144 (470)
T TIGR00614 69 LQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGH 144 (470)
T ss_pred HHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccc
Confidence 98865 47888888887664321 12358999999998621110000010123689999999999976
Q ss_pred CChHHHHHH
Q 007492 583 DRGPVIEAL 591 (601)
Q Consensus 583 ~rg~~le~i 591 (601)
++.+.+..+
T Consensus 145 ~fr~~~~~l 153 (470)
T TIGR00614 145 DFRPDYKAL 153 (470)
T ss_pred ccHHHHHHH
Confidence 355555443
No 44
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=7.6e-19 Score=173.64 Aligned_cols=157 Identities=20% Similarity=0.323 Sum_probs=134.4
Q ss_pred HHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 429 DEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 429 ~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.++++..+ .||+.|..||+.|++.++ .|+|++++|..|+|||.+|.+.+++.+.- .....++++++|||+|
T Consensus 36 edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~-------~~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 36 EDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDI-------SVRETQALILSPTREL 107 (400)
T ss_pred HHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeeccc-------ccceeeEEEecChHHH
Confidence 34555555 799999999999999999 79999999999999999999999887643 2456899999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhh-HHHHHccCCCCCccCCccEEEeccCcccCC-
Q 007492 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND- 582 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d- 582 (601)
|.|+.+....+..++++.+..+.|+.++.... --+.|++++||++ +|.+.++..... .|+++|+||+|.|++
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr---~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTR---AVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccc---ceeEEEeccHHHHHHh
Confidence 99999999999999999999999998875432 2579999999999 588888775544 699999999999988
Q ss_pred CChHHHHHHHHHHH
Q 007492 583 DRGPVIEALVARTL 596 (601)
Q Consensus 583 ~rg~~le~iv~r~~ 596 (601)
+|+..+..|...++
T Consensus 185 gfk~Qiydiyr~lp 198 (400)
T KOG0328|consen 185 GFKEQIYDIYRYLP 198 (400)
T ss_pred hHHHHHHHHHHhCC
Confidence 78888888876665
No 45
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.74 E-value=6.9e-18 Score=203.07 Aligned_cols=136 Identities=29% Similarity=0.411 Sum_probs=106.2
Q ss_pred EeccCCCchHHHHHHHHHHHHhhhcccC---CCCCCCcEEEEEccChhHHHHHHHHHHhhcC------------CCCcEE
Q 007492 462 VCAPTGAGKTNIAMISILHEIGQHFRDG---YLHKDEFKIVYVAPMKALAAEVTRTFSSRLS------------PLNMIV 526 (601)
Q Consensus 462 v~ApTGsGKT~va~l~il~~l~~~~~~~---~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~------------~~~i~V 526 (601)
|+||||||||++|.+|++..+......+ .....+.++|||+|+|||+.|++++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 6899999999999999999887532110 0112468999999999999999999875321 247999
Q ss_pred EEEeCCCccchhh--c-CCccEEEEChhhHHHH-HccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHHhhh
Q 007492 527 RELTGDMQLSRNE--L-EETQMIVTTPEKWDVI-TRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQV 599 (601)
Q Consensus 527 ~~l~Gd~~~~~~~--~-~~~~IiVtTPekld~l-~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~r~~ 599 (601)
..++||++...+. + ..++|||||||+|..+ +++. ..+.+.|++|||||+|.|.+ .||..++.++.|+.+.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 9999999876542 2 4689999999999665 4332 23445799999999999998 59999999999987654
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=4e-18 Score=166.36 Aligned_cols=159 Identities=18% Similarity=0.325 Sum_probs=131.1
Q ss_pred HHHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 429 DEFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 429 ~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
|++.+... +||+.|..+|..|||.+. -|.++|.+|.+|.|||.+|.++.|+.|... .+...++++|.||+|
T Consensus 51 pellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqiepv-------~g~vsvlvmchtrel 122 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIEPV-------DGQVSVLVMCHTREL 122 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcCCC-------CCeEEEEEEeccHHH
Confidence 67777665 899999999999999998 599999999999999999999999988642 346789999999999
Q ss_pred HHHHHHHHHhhcCCC-CcEEEEEeCCCccchhh---cCCccEEEEChhhHHHHHc-cCCCCCccCCccEEEeccCcccCC
Q 007492 508 AAEVTRTFSSRLSPL-NMIVRELTGDMQLSRNE---LEETQMIVTTPEKWDVITR-KSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~-~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~l~r-~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
|-|+.+++.++.+++ +++|..+.|++.+.+.. .+-+||+|+||+++..+.| +..++. +|+.+|+||++.|++
T Consensus 123 afqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk---~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 123 AFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLK---NVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchh---hcceeehhhHHHHHH
Confidence 999988877766654 68999999999987653 2468999999999765555 444444 699999999999986
Q ss_pred --CChHHHHHHHHHHHhh
Q 007492 583 --DRGPVIEALVARTLRQ 598 (601)
Q Consensus 583 --~rg~~le~iv~r~~r~ 598 (601)
++...++.|+..+|++
T Consensus 200 ~lDMrRDvQEifr~tp~~ 217 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHE 217 (387)
T ss_pred HHHHHHHHHHHhhcCccc
Confidence 5666777787766653
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.73 E-value=3.3e-17 Score=196.16 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=106.0
Q ss_pred hhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 427 ELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 427 ~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
++.+|+...+ |+ .|+++|..++|.++ .|+|++++||||+|||.+ .++++..+.. .+.+++||+||++
T Consensus 68 ~~~~~f~~~~-G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~f-~l~~~~~l~~---------~g~~alIL~PTre 134 (1176)
T PRK09401 68 EFEKFFKKKT-GS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTTF-GLVMSLYLAK---------KGKKSYIIFPTRL 134 (1176)
T ss_pred HHHHHHHHhc-CC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHHH-HHHHHHHHHh---------cCCeEEEEeccHH
Confidence 3344555545 77 79999999999998 799999999999999964 4444444432 4689999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEeCCCccc---hh----h--cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccC
Q 007492 507 LAAEVTRTFSSRLSPLNMIVRELTGDMQLS---RN----E--LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577 (601)
Q Consensus 507 La~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~---~~----~--~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEa 577 (601)
||.|++..|.+++...++.+..++|+.... +. . ...++|+||||+++...... +.. ..+++||||||
T Consensus 135 La~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~-~~~~~lVvDEa 210 (1176)
T PRK09401 135 LVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPK-KKFDFVFVDDV 210 (1176)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccc-cccCEEEEECh
Confidence 999999999999988888888888765532 11 1 13589999999997333321 221 24899999999
Q ss_pred cccCC
Q 007492 578 HLLND 582 (601)
Q Consensus 578 H~l~d 582 (601)
|+|++
T Consensus 211 D~~L~ 215 (1176)
T PRK09401 211 DAVLK 215 (1176)
T ss_pred HHhhh
Confidence 99985
No 48
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.73 E-value=6.5e-19 Score=180.25 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=127.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHH-HhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHE-IGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~-l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.|+.+|||||.+-+|.++ +|++++..|-||||||++|.+|++-. +.+.+.-......++..++|||+|+||.|.+.-+
T Consensus 188 KGI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii 266 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII 266 (610)
T ss_pred cCCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH
Confidence 799999999999999998 89999999999999999999997643 3332222233456899999999999999988766
Q ss_pred HhhcCC---C---CcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 516 SSRLSP---L---NMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 516 ~~~l~~---~---~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
..+... . .++...+.|+.++..+. ..+.||+|+||++| |.+..+...+. -++++++||||+|.| .|
T Consensus 267 e~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd---~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 267 EQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLD---ACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHH---HHHHhhhhhHHHHhhccc
Confidence 555432 2 36778889999887553 36899999999998 78877765554 489999999999999 78
Q ss_pred hHHHHHHHHHHHhh
Q 007492 585 GPVIEALVARTLRQ 598 (601)
Q Consensus 585 g~~le~iv~r~~r~ 598 (601)
...+..|+..+.-|
T Consensus 344 Eddir~iF~~FK~Q 357 (610)
T KOG0341|consen 344 EDDIRTIFSFFKGQ 357 (610)
T ss_pred hhhHHHHHHHHhhh
Confidence 89999998876544
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.73 E-value=3.6e-17 Score=185.96 Aligned_cols=138 Identities=21% Similarity=0.349 Sum_probs=107.6
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 431 FAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 431 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
..+..| ||.+|+++|.+++++++ .|+|++++||||+|||++|++|++. .+..++||+|+++|+.|
T Consensus 4 ~l~~~f-g~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~-------------~~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 4 VLKRTF-GYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALL-------------LKGLTVVISPLISLMKD 68 (591)
T ss_pred HHHHhc-CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHH-------------cCCcEEEEcCCHHHHHH
Confidence 344455 89999999999999998 6899999999999999999999874 13468999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhH--HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 511 VTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKW--DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 511 ~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekl--d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
++..+.. +|+.+..++|+....... ....+|+++||+++ ..+.+.. .. ..+++|||||||++.
T Consensus 69 q~~~l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l-~~---~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 69 QVDQLRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNML-QR---IPIALVAVDEAHCVS 140 (591)
T ss_pred HHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHH-hc---CCCCEEEEeCCcccc
Confidence 9998876 478888898887654321 24689999999997 2222221 11 258999999999997
Q ss_pred C---CChHHHHHH
Q 007492 582 D---DRGPVIEAL 591 (601)
Q Consensus 582 d---~rg~~le~i 591 (601)
+ ++.|.+..+
T Consensus 141 ~~g~~frp~y~~l 153 (591)
T TIGR01389 141 QWGHDFRPEYQRL 153 (591)
T ss_pred cccCccHHHHHHH
Confidence 5 466666544
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.72 E-value=6e-17 Score=189.84 Aligned_cols=126 Identities=20% Similarity=0.286 Sum_probs=103.7
Q ss_pred CCCCCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
+| .||++|.+|++.++.. +.|.|+|||||||||.+|++++++.+.. +.+++|++||++||.|++
T Consensus 449 ~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----------g~qvlvLvPT~~LA~Q~~ 517 (926)
T TIGR00580 449 PF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----------GKQVAVLVPTTLLAQQHF 517 (926)
T ss_pred CC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----------CCeEEEEeCcHHHHHHHH
Confidence 67 5999999999999853 3699999999999999999999988753 579999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 513 RTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
..|.+++..++++|..++|..+..... ..+++||||||..+ .+. ..+ +.+++|||||+|++.
T Consensus 518 ~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~--v~f-~~L~llVIDEahrfg 586 (926)
T TIGR00580 518 ETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKD--VKF-KDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCC--CCc-ccCCEEEeecccccc
Confidence 999999999999999999987643211 13589999999533 222 223 359999999999964
No 51
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=2.4e-17 Score=190.39 Aligned_cols=143 Identities=27% Similarity=0.473 Sum_probs=120.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|| .|.++|++++-.+ ..|++++||||||||||.|+..+|...+. ++.+++|.+|.|||.+|.++.|..
T Consensus 117 ~F-~LD~fQ~~a~~~L-er~esVlV~ApTssGKTvVaeyAi~~al~----------~~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 117 PF-ELDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAIALALR----------DGQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred CC-CcCHHHHHHHHHH-hCCCcEEEEccCCCCcchHHHHHHHHHHH----------cCCceEeccchhhhhhhHHHHHHH
Confidence 45 7999999999876 48999999999999999999999987765 366799999999999999999988
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccC-CCCCccCCccEEEeccCcccCC-CChHHHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS-SDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVART 595 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~-~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~ 595 (601)
++...--.|+.+|||.+++.. +.++|.|.|.|..+..++ ..+ ..+..||+||+|+|.| +||.++|.++--+
T Consensus 185 ~fgdv~~~vGL~TGDv~IN~~----A~clvMTTEILRnMlyrg~~~~---~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 185 KFGDVADMVGLMTGDVSINPD----APCLVMTTEILRNMLYRGSESL---RDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HhhhhhhhccceecceeeCCC----CceEEeeHHHHHHHhccCcccc---cccceEEEEeeeeccccccchhHHHHHHhc
Confidence 875432346899999998765 789999999996555544 333 3699999999999999 8999999999988
Q ss_pred Hhhh
Q 007492 596 LRQV 599 (601)
Q Consensus 596 ~r~~ 599 (601)
|+.|
T Consensus 258 P~~v 261 (1041)
T COG4581 258 PDHV 261 (1041)
T ss_pred CCCC
Confidence 8753
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.72 E-value=3.8e-17 Score=186.71 Aligned_cols=128 Identities=26% Similarity=0.407 Sum_probs=106.0
Q ss_pred cCCCCCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.+| .||++|.+|++.++.. ..|.|++||||||||.+|+++++..+. .+.+++|++||++||.|+
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------~g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------AGYQVALMAPTEILAEQH 300 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------cCCcEEEECCHHHHHHHH
Confidence 366 7999999999998843 137899999999999999999998774 367999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 512 TRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 512 ~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
++.|.+++.++|+++..++|+.....+. ..+++|+|+||..+. .. ..+ ..++++||||+|++..
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~----~~--~~~-~~l~lvVIDEaH~fg~ 371 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ----EK--VEF-KRLALVIIDEQHRFGV 371 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh----cc--ccc-cccceEEEechhhccH
Confidence 9999999999999999999998764321 135899999999862 11 222 3589999999999764
No 53
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.72 E-value=6.6e-18 Score=182.00 Aligned_cols=150 Identities=18% Similarity=0.349 Sum_probs=128.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.+|..|++||.+|||+++ .+.|+||+|..|+|||++|.+.++..+... .....++||+|||++|-|+...+.
T Consensus 43 n~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~~~-------~~~~q~~Iv~PTREiaVQI~~tv~ 114 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLDSR-------SSHIQKVIVTPTREIAVQIKETVR 114 (980)
T ss_pred hcccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcCcc-------cCcceeEEEecchhhhhHHHHHHH
Confidence 478899999999999998 799999999999999999998888876542 457899999999999999999999
Q ss_pred hhcCCC-CcEEEEEeCCCccchh--hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC--CChHHHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRN--ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND--DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d--~rg~~le~ 590 (601)
+....+ |.++..+.|++..... .+++++|+|+||+++ ..+..+..+++ .|+++|+||||.|.+ .|...+..
T Consensus 115 ~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s---~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 115 KVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMS---HVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCcc---ceeEEEeccHHhhhchhhHHHHHHH
Confidence 988764 8999999999887644 467899999999997 55555555665 699999999999998 57888888
Q ss_pred HHHHHHh
Q 007492 591 LVARTLR 597 (601)
Q Consensus 591 iv~r~~r 597 (601)
|+..+|.
T Consensus 192 ii~slP~ 198 (980)
T KOG4284|consen 192 IINSLPQ 198 (980)
T ss_pred HHHhcch
Confidence 8888764
No 54
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=7.5e-18 Score=174.51 Aligned_cols=151 Identities=17% Similarity=0.300 Sum_probs=130.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||+.|+|||++.+|.++ .+++++..|-||||||.+|++|++..+..+. ..+.+++++.|||+||.|....+.
T Consensus 39 kg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s------~~g~RalilsptreLa~qtlkvvk 111 (529)
T KOG0337|consen 39 KGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------QTGLRALILSPTRELALQTLKVVK 111 (529)
T ss_pred hhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhcc------ccccceeeccCcHHHHHHHHHHHH
Confidence 689999999999999998 7999999999999999999999999998863 357899999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhhc---CCccEEEEChhhHH-HHHccCCCCCccCCccEEEeccCcccCCC-ChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNEL---EETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~~---~~~~IiVtTPekld-~l~r~~~~~~~~~~v~llIiDEaH~l~d~-rg~~le~i 591 (601)
...+..++++.+++|+-++.++.+ .+.+||++||+++- ....-...++ .|.+||+||++.|.++ |.+.+..+
T Consensus 112 dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~---sveyVVfdEadrlfemgfqeql~e~ 188 (529)
T KOG0337|consen 112 DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLS---SVEYVVFDEADRLFEMGFQEQLHEI 188 (529)
T ss_pred HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheecccc---ceeeeeehhhhHHHhhhhHHHHHHH
Confidence 998889999999999888876643 47999999999962 2222222233 5999999999999994 88999999
Q ss_pred HHHHHh
Q 007492 592 VARTLR 597 (601)
Q Consensus 592 v~r~~r 597 (601)
++|++-
T Consensus 189 l~rl~~ 194 (529)
T KOG0337|consen 189 LSRLPE 194 (529)
T ss_pred HHhCCC
Confidence 999863
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.71 E-value=3.3e-17 Score=188.48 Aligned_cols=127 Identities=24% Similarity=0.352 Sum_probs=105.6
Q ss_pred CCCCCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
+| .||++|.+|++.+... ..|.|++||||||||.+|+++++..+. .+.+++|++||++||.|++
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------~g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------AGYQAALMAPTEILAEQHY 327 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEEeccHHHHHHHH
Confidence 55 6999999999998743 248999999999999999999998774 3679999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 513 RTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
..|.+++..+|++|..++|+.+...+. ...++|+||||+.|.. . ..+ ..++++||||+|++..
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~--v~~-~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----D--VEF-HNLGLVIIDEQHRFGV 397 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----c--chh-cccceEEEechhhhhH
Confidence 999999999999999999998754321 1359999999988721 1 112 3599999999999753
No 56
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.70 E-value=1.3e-16 Score=181.48 Aligned_cols=139 Identities=22% Similarity=0.315 Sum_probs=105.9
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 430 EFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 430 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
+..+..| ||..|+|+|.++++.++ .|+|++++||||+|||++|++|++.. ...+|||+|+++|+.
T Consensus 15 ~~l~~~f-G~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~-------------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 15 QVLQETF-GYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL-------------DGLTLVVSPLISLMK 79 (607)
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc-------------CCCEEEEecHHHHHH
Confidence 3444555 99999999999999998 79999999999999999999999852 347999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCccchh-------hcCCccEEEEChhhHH--HHHccCCCCCccCCccEEEeccCccc
Q 007492 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRN-------ELEETQMIVTTPEKWD--VITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 510 Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~-------~~~~~~IiVtTPekld--~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
|++..+.. .|+.+..+.+....... .....+++++||+++. .+.... . ...+++|||||||++
T Consensus 80 dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l---~-~~~l~~iVIDEaH~i 151 (607)
T PRK11057 80 DQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHL---A-HWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHH---h-hCCCCEEEEeCcccc
Confidence 99998876 46777777776554321 1135789999999962 222211 1 124899999999999
Q ss_pred CC---CChHHHHHH
Q 007492 581 ND---DRGPVIEAL 591 (601)
Q Consensus 581 ~d---~rg~~le~i 591 (601)
.+ ++.+.+..+
T Consensus 152 ~~~G~~fr~~y~~L 165 (607)
T PRK11057 152 SQWGHDFRPEYAAL 165 (607)
T ss_pred ccccCcccHHHHHH
Confidence 85 466665443
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.70 E-value=1.3e-16 Score=182.84 Aligned_cols=154 Identities=22% Similarity=0.269 Sum_probs=113.0
Q ss_pred hHHHHHHHhcCCCCCcHHHHHHHHHHHhcCC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 428 LDEFAQAAFHGYKSLNRIQSRIFQTVYYTNE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 428 L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
+.++++.+ .||+ |+|||.+++|.++ .|+ +++++||||||||.++.++++.. .. + .....++||++|||+
T Consensus 4 f~~ff~~~-~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~-~~----~--~~~~~rLv~~vPtRe 73 (844)
T TIGR02621 4 FDEWYQGL-HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAV-EI----G--AKVPRRLVYVVNRRT 73 (844)
T ss_pred HHHHHHHH-hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhccc-cc----c--ccccceEEEeCchHH
Confidence 34555555 4887 9999999999998 566 67888999999999766555432 11 0 112346777889999
Q ss_pred HHHHHHHHHHhhcCCC-----------------------CcEEEEEeCCCccchhh---cCCccEEEEChhhHHHHHccC
Q 007492 507 LAAEVTRTFSSRLSPL-----------------------NMIVRELTGDMQLSRNE---LEETQMIVTTPEKWDVITRKS 560 (601)
Q Consensus 507 La~Q~~~~~~~~l~~~-----------------------~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~l~r~~ 560 (601)
||.|+++.+.++.+.+ +++|..++|+.....+. ..+++|||+|++. +.++.
T Consensus 74 La~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~---i~sr~ 150 (844)
T TIGR02621 74 VVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDM---IGSRL 150 (844)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHH---HcCCc
Confidence 9999999998877644 48899999998876543 2578999999644 43333
Q ss_pred C-------------CCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 561 S-------------DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 561 ~-------------~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
. +..+...+++||||||| +...|...++.|+..+
T Consensus 151 L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l 197 (844)
T TIGR02621 151 LFSGYGCGFKSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQ 197 (844)
T ss_pred cccccccccccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhc
Confidence 2 11124569999999999 5456888999998864
No 58
>PRK14701 reverse gyrase; Provisional
Probab=99.69 E-value=2.5e-16 Score=192.54 Aligned_cols=139 Identities=17% Similarity=0.268 Sum_probs=107.0
Q ss_pred hhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 426 KELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 426 ~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
.++-++++.++ || .|+++|..++|.++ .|++++++||||||||.+++++.+.... .+.++|||+||+
T Consensus 66 ~~~~~~f~~~~-G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~~----------~g~~aLVl~PTr 132 (1638)
T PRK14701 66 EEFEEFFEKIT-GF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLAL----------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHHhh-CC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHHh----------cCCeEEEEECHH
Confidence 33444555545 88 69999999999998 7999999999999999976665554321 367999999999
Q ss_pred hHHHHHHHHHHhhcCCC--CcEEEEEeCCCccchhh-----c--CCccEEEEChhhH-HHHHccCCCCCccCCccEEEec
Q 007492 506 ALAAEVTRTFSSRLSPL--NMIVRELTGDMQLSRNE-----L--EETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIID 575 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~--~i~V~~l~Gd~~~~~~~-----~--~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiD 575 (601)
+|+.|++..+..++... ++.+..++|+.+...+. + ..++|+|+||+++ +.+.. ... ..+++||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-l~~----~~i~~iVVD 207 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-MKH----LKFDFIFVD 207 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-Hhh----CCCCEEEEE
Confidence 99999999999987765 56778889988765431 1 2589999999986 33322 111 358999999
Q ss_pred cCcccCC
Q 007492 576 EVHLLND 582 (601)
Q Consensus 576 EaH~l~d 582 (601)
|||+|++
T Consensus 208 EAD~ml~ 214 (1638)
T PRK14701 208 DVDAFLK 214 (1638)
T ss_pred Cceeccc
Confidence 9999974
No 59
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=172.11 Aligned_cols=153 Identities=22% Similarity=0.353 Sum_probs=118.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.+|..|+++|.+|+|.++ .+++++.|||||||||++|.+|++.++..+.. .-...+.+++|++|||+||.|++.++.
T Consensus 154 ~~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~--~~~~~gl~a~Il~ptreLa~Qi~re~~ 230 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ--EKHKVGLRALILSPTRELAAQIYREMR 230 (593)
T ss_pred CCCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhhc--ccCccceEEEEecchHHHHHHHHHHHH
Confidence 689999999999999988 69999999999999999999999999987642 112457899999999999999999999
Q ss_pred hhc--CCCCcEEEEEeCCCccchh----hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCC--ChHH
Q 007492 517 SRL--SPLNMIVRELTGDMQLSRN----ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDD--RGPV 587 (601)
Q Consensus 517 ~~l--~~~~i~V~~l~Gd~~~~~~----~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~--rg~~ 587 (601)
++- ...+..+..+......... ....++|+|+||-++ ..+........+. .|.++|+||+|++.+. |-.+
T Consensus 231 k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~-~V~~lV~dEaD~lfe~~~f~~Q 309 (593)
T KOG0344|consen 231 KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS-KVEWLVVDEADLLFEPEFFVEQ 309 (593)
T ss_pred hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh-eeeeEeechHHhhhChhhHHHH
Confidence 988 5666666665554322211 124689999999996 4455444445555 4999999999999974 3334
Q ss_pred HHHHHH
Q 007492 588 IEALVA 593 (601)
Q Consensus 588 le~iv~ 593 (601)
+..|++
T Consensus 310 la~I~s 315 (593)
T KOG0344|consen 310 LADIYS 315 (593)
T ss_pred HHHHHH
Confidence 444443
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.68 E-value=1.7e-16 Score=169.58 Aligned_cols=127 Identities=23% Similarity=0.306 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC--
Q 007492 445 IQSRIFQTVYYTNE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-- 521 (601)
Q Consensus 445 iQ~~~i~~~l~~~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~-- 521 (601)
+|.++|+++++++. +++++||||||||.+|+++++. ...+++|++|+++|+.|+++.|.+++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~ 67 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------------GENDTIALYPTNALIEDQTEAIKEFVDVFK 67 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcC
Confidence 59999999986553 5889999999999999999985 1347899999999999999999988743
Q ss_pred --CCcEEEEEeCCCccch---------------------h--hcCCccEEEEChhhHHHHHccCC-C-----CCccCCcc
Q 007492 522 --LNMIVRELTGDMQLSR---------------------N--ELEETQMIVTTPEKWDVITRKSS-D-----MSLSMLVK 570 (601)
Q Consensus 522 --~~i~V~~l~Gd~~~~~---------------------~--~~~~~~IiVtTPekld~l~r~~~-~-----~~~~~~v~ 570 (601)
.++.+..++|+..... . ....++|++|||+.|+.+.+.+. . ..+...++
T Consensus 68 ~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 68 PERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 3677888888732210 0 01368899999999988776531 1 12345799
Q ss_pred EEEeccCcccCCCC
Q 007492 571 LLIIDEVHLLNDDR 584 (601)
Q Consensus 571 llIiDEaH~l~d~r 584 (601)
+|||||+|.+....
T Consensus 148 ~iV~DE~H~~~~~~ 161 (357)
T TIGR03158 148 TVIFDEFHLYDAKQ 161 (357)
T ss_pred EEEEecccccCccc
Confidence 99999999998633
No 61
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.68 E-value=2.5e-16 Score=188.90 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=100.2
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..|+++|..++|.++ .|+|++++||||||||. |.++++..+.. .+.+++||+||++||.|++..+.++.
T Consensus 77 ~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---------~g~~vLIL~PTreLa~Qi~~~l~~l~ 145 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK---------KGKRCYIILPTTLLVIQVAEKISSLA 145 (1171)
T ss_pred CCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeCHHHHHHHHHHHHHHHH
Confidence 379999999999998 79999999999999997 55666555433 36799999999999999999999998
Q ss_pred CCCCcEE---EEEeCCCccchhh-----c--CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 520 SPLNMIV---RELTGDMQLSRNE-----L--EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 520 ~~~~i~V---~~l~Gd~~~~~~~-----~--~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
...|+.+ +.++|+.+...+. + .+++|+|+||+++........ . .++++||||||.|++
T Consensus 146 ~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~--~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 146 EKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P--KFDFIFVDDVDALLK 213 (1171)
T ss_pred HhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C--CCCEEEEeChHhhhh
Confidence 8777654 3578887765331 1 348999999999743332211 1 489999999999987
No 62
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=2e-16 Score=180.67 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=112.7
Q ss_pred cCCCCC---cHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 437 HGYKSL---NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 437 ~g~~~l---~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
.||..| +|+|.++++.+. .+.+++++|+||+|||++|++|++..+.. +..+++|+||++||.|+.+
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~----------g~~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALT----------GKPVHLVTVNDYLAQRDCE 153 (970)
T ss_pred ccccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhh----------cCCeEEEeCCHHHHHHHHH
Confidence 467766 999999999988 68999999999999999999999987653 2248899999999999999
Q ss_pred HHHhhcCCCCcEEEEEeCCCccchhh-cCCccEEEEChhhH--HHHHccCCCCCc----cCCccEEEeccCcccCC
Q 007492 514 TFSSRLSPLNMIVRELTGDMQLSRNE-LEETQMIVTTPEKW--DVITRKSSDMSL----SMLVKLLIIDEVHLLND 582 (601)
Q Consensus 514 ~~~~~l~~~~i~V~~l~Gd~~~~~~~-~~~~~IiVtTPekl--d~l~r~~~~~~~----~~~v~llIiDEaH~l~d 582 (601)
.+..+.+.+|++|..++|++....+. ...++|+||||+++ |.+..+....+. .+.+.++||||||.|+-
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 99999999999999999998876543 34699999999997 777766444331 23468999999999874
No 63
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=4.8e-18 Score=191.57 Aligned_cols=151 Identities=41% Similarity=0.648 Sum_probs=139.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
++.++|+|.+.|...++.+.|+++-||||+|||++|.+++++.+..+ ++.+++||+|+++|+.+-...|.++
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--------p~~kvvyIap~kalvker~~Dw~~r 996 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY--------PGSKVVYIAPDKALVKERSDDWSKR 996 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC--------CCccEEEEcCCchhhcccccchhhh
Confidence 34789999999999999999999999999999999999999988763 6789999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHHh
Q 007492 519 LSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLR 597 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~r 597 (601)
...-|+++++++|+..........++|+||||++|+-+.|.|....+++.|.++|+||+|++.++|||++|.|++|+-.
T Consensus 997 ~~~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 997 DELPGIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNY 1075 (1230)
T ss_pred cccCCceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeecccc
Confidence 8777999999999998887777889999999999999999999889999999999999999999999999999988644
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.67 E-value=6.8e-16 Score=172.01 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=119.8
Q ss_pred cCCcchhhcccCCcceEecCCCCCCCCCCCccccchhhhHHHHHHHh--cC--CCCCcHHHHHHHHHHHhcCCceeEecc
Q 007492 390 ALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAF--HG--YKSLNRIQSRIFQTVYYTNENILVCAP 465 (601)
Q Consensus 390 ~lp~~~~~~~~~~~~e~~vp~~~~~~~~~~~~l~~i~~L~~~~~~~f--~g--~~~l~~iQ~~~i~~~l~~~~n~lv~Ap 465 (601)
.+|.|.........++..+.+........++. ++-.++..|+.... .+ ...|+++|.++++.++ .+.+.+++||
T Consensus 60 ~~prG~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l-~~~~~il~ap 137 (501)
T PHA02558 60 LLPYGLVGQLKKFAKNRGYSIWVDPRIEENED-ISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGL-KNNRRLLNLP 137 (501)
T ss_pred CcccchHHHHHHHHHhcCCeEecCcccccCCC-CCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHH-hcCceEEEeC
Confidence 78988877655544443333222222222221 22234555655433 11 3489999999999998 5788999999
Q ss_pred CCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccE
Q 007492 466 TGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQM 545 (601)
Q Consensus 466 TGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~I 545 (601)
||+|||.++...+ ..+.. ....++|||+||++|+.|+.+.|.+++......+..+.|+.... ...+|
T Consensus 138 TGsGKT~i~~~l~-~~~~~--------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~----~~~~I 204 (501)
T PHA02558 138 TSAGKSLIQYLLS-RYYLE--------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD----TDAPI 204 (501)
T ss_pred CCCCHHHHHHHHH-HHHHh--------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC----CCCCE
Confidence 9999999876533 22222 13459999999999999999999987654344454555554332 34789
Q ss_pred EEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 546 IVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 546 iVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
+|+||+++...... +...+++||+||||++.. ..++.++.++
T Consensus 205 ~VaT~qsl~~~~~~-----~~~~~~~iIvDEaH~~~~---~~~~~il~~~ 246 (501)
T PHA02558 205 VVSTWQSAVKQPKE-----WFDQFGMVIVDECHLFTG---KSLTSIITKL 246 (501)
T ss_pred EEeeHHHHhhchhh-----hccccCEEEEEchhcccc---hhHHHHHHhh
Confidence 99999996322111 234689999999999974 4566666555
No 65
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.67 E-value=5e-16 Score=185.73 Aligned_cols=126 Identities=20% Similarity=0.305 Sum_probs=103.2
Q ss_pred CCCCCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
+| .||++|.+|++.++.. ..|+|+|||||+|||.+|+.+++..+. .+.+++||+||++||.|++
T Consensus 598 ~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----------~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 598 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----------NHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred CC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHH
Confidence 45 7999999999999843 379999999999999999998877653 3679999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccchhh--c-----CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 513 RTFSSRLSPLNMIVRELTGDMQLSRNE--L-----EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~Gd~~~~~~~--~-----~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
..|.+++..+++++..++|..+...+. + ..++|+|+||+.+ ++. ..+ ..+++|||||+|++.
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~--v~~-~~L~lLVIDEahrfG 735 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSD--VKW-KDLGLLIVDEEHRFG 735 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCC--CCH-hhCCEEEEechhhcc
Confidence 999999988899999999887654332 1 3689999999744 222 223 259999999999984
No 66
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8.8e-17 Score=165.65 Aligned_cols=158 Identities=22% Similarity=0.366 Sum_probs=131.3
Q ss_pred HHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 431 FAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 431 ~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
+++..+ .||++|+.||+.|+..+. +|.|+.+.|++|+|||.+|.+++++.+.. +.....+++++|+|+||.
T Consensus 37 LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~-------~~ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 37 LLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM-------SVKETQALILAPTRELAQ 108 (397)
T ss_pred HHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc-------chHHHHHHHhcchHHHHH
Confidence 444444 699999999999999987 79999999999999999999999998743 235678999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCccchh--hc--CCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-C
Q 007492 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRN--EL--EETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-D 583 (601)
Q Consensus 510 Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~--~~--~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~ 583 (601)
|+...+...+...+.+|..+.|+.....+ .+ ..++|+|+||++. +.+.++.... +.++++|+||++.|+. +
T Consensus 109 qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~---~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 109 QIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLST---DGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccc---cceeEEeecchHhhhccc
Confidence 99999888888889999999998776532 23 3589999999995 6666653222 2599999999999987 7
Q ss_pred ChHHHHHHHHHHHhhh
Q 007492 584 RGPVIEALVARTLRQV 599 (601)
Q Consensus 584 rg~~le~iv~r~~r~~ 599 (601)
|...++.|+..++..+
T Consensus 186 fkdqI~~if~~lp~~v 201 (397)
T KOG0327|consen 186 FKDQIYDIFQELPSDV 201 (397)
T ss_pred hHHHHHHHHHHcCcch
Confidence 8899999998887543
No 67
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=3.4e-17 Score=186.73 Aligned_cols=136 Identities=36% Similarity=0.656 Sum_probs=123.1
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
...|++|.++|+..++++.|++|+||+|||||.+|.+++++ . ....+++|++|+.+.+..++..|.+++
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~--------~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P--------DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C--------ccceEEEEecchHHHHHHHHHHHHHhh
Confidence 34599999999999999999999999999999999999987 1 356899999999999999999999988
Q ss_pred CC-CCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHH
Q 007492 520 SP-LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVA 593 (601)
Q Consensus 520 ~~-~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~ 593 (601)
.. .|..+..++|..++....++..|||++||++|+.+. ..+.+++.|.||.|++++-.|+++|.|++
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~lq-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLLQ-------SIQQVDLFIVDELHLIGGVYGAVYEVICS 1278 (1674)
T ss_pred ccccCceEEecCCccccchHHhhhcceEEechhHHHHHh-------hhhhcceEeeehhhhhcccCCceEEEEee
Confidence 65 589999999999999998999999999999999882 33469999999999999989999988876
No 68
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=5.4e-16 Score=173.46 Aligned_cols=138 Identities=30% Similarity=0.461 Sum_probs=119.6
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|-.+|.+||-++. .|..++|.|+|.||||+||..+|.-.- .++.|+||.+|.|||.+|-++.|+..+.
T Consensus 297 elD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq----------~h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQ----------KHMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred CccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHH----------hhccceEecchhhhhccchHHHHHHhcc
Confidence 79999999998875 799999999999999999988875432 2578999999999999999999999876
Q ss_pred CCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHHhhh
Q 007492 521 PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQV 599 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~r~~ 599 (601)
..| .+|||.++.+. +.++|.|.|.|..+..++.+ +.+.|.+||+||+|.+.| +||.|||.+|-.+|++|
T Consensus 366 Dvg----LlTGDvqinPe----AsCLIMTTEILRsMLYrgad--liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 366 DVG----LLTGDVQINPE----ASCLIMTTEILRSMLYRGAD--LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred ccc----eeecceeeCCC----cceEeehHHHHHHHHhcccc--hhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 544 89999998866 78999999999666655544 334699999999999999 89999999999999886
No 69
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=156.15 Aligned_cols=147 Identities=17% Similarity=0.316 Sum_probs=121.8
Q ss_pred HHHHHHHh-cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 429 DEFAQAAF-HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 429 ~~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
|++.+..+ ++|..|+.||..++|.++.. ..|++.++..|+|||.+|.|+||.++.- ....++++.|+|||+
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-------~~~~PQ~iCLaPtrE 171 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-------DVVVPQCICLAPTRE 171 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------cccCCCceeeCchHH
Confidence 78887766 89999999999999999854 5699999999999999999999998754 235688999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHc-cCCCCCccCCccEEEeccCcccCCCC
Q 007492 507 LAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITR-KSSDMSLSMLVKLLIIDEVHLLNDDR 584 (601)
Q Consensus 507 La~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r-~~~~~~~~~~v~llIiDEaH~l~d~r 584 (601)
||.|+.+.+.+.++..++++.....+....+...-..||+|+||+.+ |++.+ +-.++. .++.+|+|||+.|.+.+
T Consensus 172 LA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~---kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 172 LAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLE---KIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChh---hceEEEecchhhhhhcc
Confidence 99999999999988888887666655555554445689999999996 66665 444544 68999999999999865
Q ss_pred h
Q 007492 585 G 585 (601)
Q Consensus 585 g 585 (601)
|
T Consensus 249 G 249 (477)
T KOG0332|consen 249 G 249 (477)
T ss_pred c
Confidence 4
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.60 E-value=6.2e-15 Score=156.96 Aligned_cols=144 Identities=25% Similarity=0.286 Sum_probs=115.8
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
+.-.++.+|..++..++ .+|.||+.|||-|||++|++.+...+... ++ ++|++||||-||.|....|.+
T Consensus 12 ~~ie~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--------~~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 12 NTIEPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWF--------GG-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred ccccHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhc--------CC-eEEEecCCchHHHHHHHHHHH
Confidence 44578899999998887 45999999999999999999999988762 34 999999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccchhh--cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNE--LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~--~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r 594 (601)
.+.-..-.++.+||..+...+. ....+|+|+||+.+ +-+..+-.++. .+.++||||||+--++ ..+-.+...
T Consensus 81 v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~---dv~~lifDEAHRAvGn--yAYv~Va~~ 155 (542)
T COG1111 81 VTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLD---DVSLLIFDEAHRAVGN--YAYVFVAKE 155 (542)
T ss_pred HhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChH---HceEEEechhhhccCc--chHHHHHHH
Confidence 8876667899999998887543 56899999999996 45555555554 5999999999998764 333344444
Q ss_pred HHh
Q 007492 595 TLR 597 (601)
Q Consensus 595 ~~r 597 (601)
.++
T Consensus 156 y~~ 158 (542)
T COG1111 156 YLR 158 (542)
T ss_pred HHH
Confidence 443
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=162.75 Aligned_cols=132 Identities=24% Similarity=0.336 Sum_probs=104.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.+.-.|+.+|..+...|+ ++|+||++|||+|||++|...+++++... +.+|||++||++-|+.|+...|+
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--------p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR--------PKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC--------CcceEEEeeCCchHHHHHHHHHh
Confidence 344579999999999998 89999999999999999999999998763 56899999999999999999998
Q ss_pred hhcCCCCcEEEEEeCCC-ccch--hhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 517 SRLSPLNMIVRELTGDM-QLSR--NELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~-~~~~--~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.++.++ .+....||. +... ......+|+|+||+.+ +.+.....+. +..+.++||||||+-..
T Consensus 128 ~~~~~~--~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k 193 (746)
T KOG0354|consen 128 IYLIPY--SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK 193 (746)
T ss_pred hccCcc--cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc
Confidence 888763 344445553 3322 2346799999999997 4455444333 23589999999999885
No 72
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.58 E-value=3.1e-14 Score=136.25 Aligned_cols=148 Identities=24% Similarity=0.353 Sum_probs=109.6
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
++.+|+++|.++++.+++...++++++|||+|||.+++.++++.+... ...+++|++|+++++.|+...+.+
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~--------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG--------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc--------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 567899999999999884328999999999999999999999877642 256899999999999999999998
Q ss_pred hcCCCC-cEEEEEeCCCccc--hhhcCCc-cEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 518 RLSPLN-MIVRELTGDMQLS--RNELEET-QMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 518 ~l~~~~-i~V~~l~Gd~~~~--~~~~~~~-~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
.+.... ..+..+.|..... ....... +|+++||+.+........ . ....++++||||+|.+.. .+...+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~-~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-L-ELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-c-CHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 876554 3444444433211 1112333 999999999744433322 1 122588999999999997 7777777777
Q ss_pred HHH
Q 007492 593 ART 595 (601)
Q Consensus 593 ~r~ 595 (601)
.++
T Consensus 155 ~~~ 157 (201)
T smart00487 155 KLL 157 (201)
T ss_pred HhC
Confidence 654
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.55 E-value=4.5e-14 Score=165.55 Aligned_cols=131 Identities=27% Similarity=0.331 Sum_probs=104.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.-.++++|..++..++. +|+||++|||+|||.+|++++...+.. .+.++|||+||++|+.|+...|.+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~--~n~lv~~ptG~GKT~~a~~~i~~~l~~---------~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 13 TIEARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLHK---------KGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred cCCccHHHHHHHHHHhc--CCeEEEcCCCccHHHHHHHHHHHHHHh---------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 34789999999998874 499999999999999999998887632 4679999999999999999999988
Q ss_pred cCCCCcEEEEEeCCCccchh--hcCCccEEEEChhhHH-HHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 519 LSPLNMIVRELTGDMQLSRN--ELEETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekld-~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
+...+..+..++|+.....+ ...+++|+|+||+.+. .+..+...+ ..+++|||||||++.+.
T Consensus 82 ~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~---~~~~liVvDEaH~~~~~ 146 (773)
T PRK13766 82 LNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISL---EDVSLLIFDEAHRAVGN 146 (773)
T ss_pred hCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCCh---hhCcEEEEECCcccccc
Confidence 76555688889998765432 2357899999999862 222222222 25899999999998764
No 74
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=6.5e-15 Score=161.44 Aligned_cols=135 Identities=30% Similarity=0.436 Sum_probs=114.8
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
+|.|+|+.++-.+ ..++.+||+|.|.+|||.||.++|...+.. ..|+||..|.|||.+|-|++|..-++
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHHhc
Confidence 7899999999886 579999999999999999999999988864 67999999999999999999988775
Q ss_pred CCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHH-ccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHHh
Q 007492 521 PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVIT-RKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLR 597 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~-r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~r 597 (601)
.|+.+|||..++.. +-.+|.|.|.|..+. |++.-+. .|.+||+||+|.|-| +||-|||.-+--++.
T Consensus 198 ----DVGLMTGDVTInP~----ASCLVMTTEILRsMLYRGSEvmr---EVaWVIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 198 ----DVGLMTGDVTINPD----ASCLVMTTEILRSMLYRGSEVMR---EVAWVIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred ----ccceeecceeeCCC----CceeeeHHHHHHHHHhccchHhh---eeeeEEeeeehhccccccceeeeeeEEeccc
Confidence 47789999998766 678999999995555 5554444 699999999999999 899999876544443
No 75
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=9.1e-14 Score=156.34 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=105.6
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|. .|+++|..+++.++ .|+ ++.+.||+|||++|.+|++.... .+..+++|+||++||.|.+..+..
T Consensus 101 g~-~p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al----------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAAL----------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CC-CCChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhh----------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 55 68999999999998 566 99999999999999999998654 367999999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccch-hhcCCccEEEEChhhH--HHHHccCC----------------------CCCccCCccEE
Q 007492 518 RLSPLNMIVRELTGDMQLSR-NELEETQMIVTTPEKW--DVITRKSS----------------------DMSLSMLVKLL 572 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~-~~~~~~~IiVtTPekl--d~l~r~~~----------------------~~~~~~~v~ll 572 (601)
++..+|++|+.++|+++... +...+++|+|+|..-| |.+..+-. .....+.+.+.
T Consensus 167 l~~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred HHhhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 99999999999999976533 2346899999999984 55543311 11122347799
Q ss_pred EeccCcccC
Q 007492 573 IIDEVHLLN 581 (601)
Q Consensus 573 IiDEaH~l~ 581 (601)
||||||.++
T Consensus 247 IvDEvDSiL 255 (656)
T PRK12898 247 IVDEADSVL 255 (656)
T ss_pred Eeeccccee
Confidence 999999975
No 76
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.49 E-value=6.2e-14 Score=149.66 Aligned_cols=127 Identities=23% Similarity=0.310 Sum_probs=86.2
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccch-
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR- 537 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~- 537 (601)
+++|+||||||||.+|++++++.+.. ..+.+++|++|+++|+.|+++.+...+.. .++.++|+.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 47999999999999999999987654 24579999999999999999999987643 3455555433110
Q ss_pred --------------------hhcCCccEEEEChhhH-HHHHccCCC--CCcc-CCccEEEeccCcccCCCChHHHHHHHH
Q 007492 538 --------------------NELEETQMIVTTPEKW-DVITRKSSD--MSLS-MLVKLLIIDEVHLLNDDRGPVIEALVA 593 (601)
Q Consensus 538 --------------------~~~~~~~IiVtTPekl-d~l~r~~~~--~~~~-~~v~llIiDEaH~l~d~rg~~le~iv~ 593 (601)
.....++|+||||+++ ..+.+.... ..+. -..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0112478999999996 333331111 1110 013789999999999743333555555
Q ss_pred HHH
Q 007492 594 RTL 596 (601)
Q Consensus 594 r~~ 596 (601)
.+.
T Consensus 150 ~l~ 152 (358)
T TIGR01587 150 VLK 152 (358)
T ss_pred HHH
Confidence 443
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.48 E-value=1.1e-13 Score=156.74 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=103.9
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHH-HHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL-HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il-~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
|+ .|+++|..+.+.+. .|. ++.++||+|||++|.+|++ +.+ . +..+.+|+||+.||.|.+..+.
T Consensus 54 g~-~p~~vQlig~~~l~-~G~--Iaem~TGeGKTLva~lpa~l~aL-~----------G~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALH-KGK--IAEMKTGEGKTLTATLPAYLNAL-T----------GKGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred CC-CccchHHhhhhhhc-CCc--eeeecCCCccHHHHHHHHHHHHH-h----------CCCEEEEcCCHHHHHHHHHHHH
Confidence 54 68999999988764 443 8999999999999999995 443 2 4479999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh-hcCCccEEEEChhhH--HHHHccCC----CCCccCCccEEEeccCcccCC
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN-ELEETQMIVTTPEKW--DVITRKSS----DMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~-~~~~~~IiVtTPekl--d~l~r~~~----~~~~~~~v~llIiDEaH~l~d 582 (601)
.+++.+|++|+.++|++....+ ....++|+++||.++ |.+..+.. .+. .+.+.++||||+|.|+-
T Consensus 119 ~l~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~-~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 119 QVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKV-QRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHhccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhh-ccccceeEeecHHHHhH
Confidence 9999999999999998876533 334689999999985 66665421 122 23589999999999874
No 78
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.3e-13 Score=158.15 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|. .|+++|..+.+.+. .|. ++++.||+|||++|++|++.... .+..+++++||+.||.|.+..+..
T Consensus 76 g~-~p~~vQl~~~~~l~-~G~--Iaem~TGeGKTL~a~lp~~l~al----------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 76 GM-RPYDVQLIGALVLH-EGN--IAEMQTGEGKTLTATMPLYLNAL----------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred CC-CCchHHHHhHHHHc-CCc--eeeecCCCcchHHHHHHHHHHHH----------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 55 79999999998765 454 99999999999999999985443 367899999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCc-cc-hhhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 518 RLSPLNMIVRELTGDMQ-LS-RNELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~-~~-~~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
++..+|++|+.++|+++ .. ++....++|++|||..+ |.+...-. .....+.+.++||||||.|+
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 99999999999999987 32 33456799999999995 65554321 11233468999999999976
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.48 E-value=2.5e-13 Score=156.25 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=97.0
Q ss_pred CCcHHHHHHHHHHHhc--CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 441 SLNRIQSRIFQTVYYT--NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~--~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.|++.|.++++.+... +.+++++||||||||.+|+.++...+.. +.++||++|+++|+.|+++.|+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----------g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----------GKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc----------CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 6899999999999753 5789999999999999999888776642 578999999999999999999987
Q ss_pred cCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 519 LSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+ |..+..++|+.+...+. ...++|+|+||..+- . ....+++|||||+|...
T Consensus 214 f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~-p~~~l~liVvDEeh~~s 271 (679)
T PRK05580 214 F---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------L-PFKNLGLIIVDEEHDSS 271 (679)
T ss_pred h---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------c-cccCCCEEEEECCCccc
Confidence 5 57899999987654321 245899999998741 1 12358999999999865
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.48 E-value=1.5e-13 Score=156.36 Aligned_cols=128 Identities=16% Similarity=0.081 Sum_probs=94.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+++|......+. .| .+++++||+|||++|.+|++..... +..++||+|+++||.|....+...++
T Consensus 70 rpydVQlig~l~l~-~G--~Iaem~TGeGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLH-QG--NIAEMKTGEGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhc-CC--ceeEecCCcchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 45555555555432 33 6999999999999999998665432 45699999999999999999999999
Q ss_pred CCCcEEEEEeCCCc---cc---hhhcCCccEEEEChhhH--HHHHcc----CCCCCccCCccEEEeccCcccCC
Q 007492 521 PLNMIVRELTGDMQ---LS---RNELEETQMIVTTPEKW--DVITRK----SSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~---~~---~~~~~~~~IiVtTPekl--d~l~r~----~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.+|++|..++++.. .. ++...+++|++|||+++ |.+... .... ..+.+.++||||||.|+-
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~-~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGK-FLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhc-ccccCcEEEEecHhhHhh
Confidence 99999998877521 22 23346899999999996 555332 1112 233589999999999853
No 81
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.42 E-value=1.4e-12 Score=148.58 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHHhcCCceeEeccCCCchHHH---------HHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 443 NRIQSRIFQTVYYTNENILVCAPTGAGKTNI---------AMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~v---------a~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
-.+|.++++.+. .+++++++|+||||||.+ |+++.+..+... . ......++++++|+|+||.|+..
T Consensus 166 ~~iQ~qil~~i~-~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~-~---~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 166 PDVQLKIFEAWI-SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI-D---PNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHH-hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc-c---cccCCcEEEEECcHHHHHHHHHH
Confidence 468999999987 799999999999999987 334444433210 0 01235689999999999999999
Q ss_pred HHHhhcCC---CCcEEEEEeCCCccc--hhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHH
Q 007492 514 TFSSRLSP---LNMIVRELTGDMQLS--RNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVI 588 (601)
Q Consensus 514 ~~~~~l~~---~~i~V~~l~Gd~~~~--~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~l 588 (601)
++.+.++. .|..|...+|+.... .......+|+|+|+... ......+++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~---------l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT---------LNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc---------ccccccCCEEEccccccCccc-hhHH
Confidence 99876654 367788889987632 12234679999997531 112236999999999998763 5666
Q ss_pred HHHHHHHH
Q 007492 589 EALVARTL 596 (601)
Q Consensus 589 e~iv~r~~ 596 (601)
..++.+.+
T Consensus 311 L~llk~~~ 318 (675)
T PHA02653 311 IAVARKHI 318 (675)
T ss_pred HHHHHHhh
Confidence 56655443
No 82
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.40 E-value=2.3e-12 Score=116.06 Aligned_cols=115 Identities=26% Similarity=0.380 Sum_probs=88.1
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccch
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR 537 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~ 537 (601)
+++++++|||+|||.+++..+...... ....+++|++|+++|+.|+...+...+.. ++.+..+.+......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 478999999999999999988886654 14579999999999999999999888765 677877777655443
Q ss_pred h---hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 538 N---ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 538 ~---~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
. .....+|+++|++.+........ ......+++||||+|.+...
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhc
Confidence 2 24679999999998633332221 11224789999999999864
No 83
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.36 E-value=8.7e-12 Score=145.24 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=86.6
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL-SPLNMIVRELTGD 532 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l-~~~~i~V~~l~Gd 532 (601)
+.++.+++++||||||||.++.+++++... .+.+++++.|+|++|.|++.++.+.+ ...|..|+...+.
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~ 83 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG 83 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc
Confidence 457889999999999999999999998652 24689999999999999999997655 3456677655443
Q ss_pred CccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcc-cCC-CChH
Q 007492 533 MQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHL-LND-DRGP 586 (601)
Q Consensus 533 ~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~-l~d-~rg~ 586 (601)
... ...+++|+|+||+++ +.+. ....+ ..+++|||||+|. +.+ +++-
T Consensus 84 ~~~---~s~~t~I~v~T~G~Llr~l~-~d~~L---~~v~~VIiDEaHER~L~~Dl~L 133 (819)
T TIGR01970 84 ENK---VSRRTRLEVVTEGILTRMIQ-DDPEL---DGVGALIFDEFHERSLDADLGL 133 (819)
T ss_pred ccc---cCCCCcEEEECCcHHHHHHh-hCccc---ccCCEEEEeccchhhhccchHH
Confidence 321 123589999999996 4443 33332 3699999999994 554 5554
No 84
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.35 E-value=4.9e-12 Score=147.46 Aligned_cols=110 Identities=25% Similarity=0.295 Sum_probs=84.0
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL-SPLNMIVRELTGD 532 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l-~~~~i~V~~l~Gd 532 (601)
+.++.+++++||||||||.++.++++.... ...+|++++|+|++|.|++..+.+.+ ...|..|+..++.
T Consensus 17 l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 17 LKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 457889999999999999999999987532 13489999999999999999997654 4467778776665
Q ss_pred CccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcc
Q 007492 533 MQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 533 ~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
..... ..++|+|+||+++..+......+ ..+++|||||+|.
T Consensus 87 ~~~~~---~~t~I~v~T~G~Llr~l~~d~~L---~~v~~IIlDEaHE 127 (812)
T PRK11664 87 ESKVG---PNTRLEVVTEGILTRMIQRDPEL---SGVGLVILDEFHE 127 (812)
T ss_pred ccccC---CCCcEEEEChhHHHHHHhhCCCc---CcCcEEEEcCCCc
Confidence 43221 34789999999974333333332 3699999999997
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=3.4e-12 Score=146.58 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=100.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++++|...--+ ++. --+..++||+|||++|.+|++..... +..+++|+||+.||.|.+..+..++.
T Consensus 82 ~~ydvQliGg~~-Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 82 RHFDVQLIGGMV-LHE--GNIAEMRTGEGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred CcchHHHhhhhh-hcc--CccccccCCCCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 567777665433 333 34789999999999999999976543 45699999999999999999999999
Q ss_pred CCCcEEEEEeCCCccchh-hcCCccEEEEChhh--HHHHHccC-CCC--CccCCccEEEeccCcccC
Q 007492 521 PLNMIVRELTGDMQLSRN-ELEETQMIVTTPEK--WDVITRKS-SDM--SLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~-~~~~~~IiVtTPek--ld~l~r~~-~~~--~~~~~v~llIiDEaH~l~ 581 (601)
.+|++|+.++|+++...+ ....++|+++||++ +|.+..+. ... ...+.+.++||||||.|+
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 999999999999876543 33479999999999 47776542 111 122468999999999976
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=7.5e-12 Score=142.53 Aligned_cols=136 Identities=14% Similarity=0.210 Sum_probs=97.0
Q ss_pred CCCcHHHHHHHHHHHhcC--CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 440 KSLNRIQSRIFQTVYYTN--ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~--~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
..|+++|.+++..++..+ ++.+|++|||+|||++++..+.. + ..++|||||+..|+.|+.++|.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l------------~k~tLILvps~~Lv~QW~~ef~~ 320 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V------------KKSCLVLCTSAVSVEQWKQQFKM 320 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 379999999999988655 47899999999999999876543 2 24699999999999999999998
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCC----CCcc--CCccEEEeccCcccCCCChHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSD----MSLS--MLVKLLIIDEVHLLNDDRGPVIEAL 591 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~----~~~~--~~v~llIiDEaH~l~d~rg~~le~i 591 (601)
++.-....+..++|+.... ......|+|+|+..+.....+... +... ....+||+||||++. ++.+..+
T Consensus 321 ~~~l~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp---A~~fr~i 395 (732)
T TIGR00603 321 WSTIDDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP---AAMFRRV 395 (732)
T ss_pred hcCCCCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc---HHHHHHH
Confidence 7654456678888864321 123478999999876322111100 1111 246799999999996 3445444
Q ss_pred HH
Q 007492 592 VA 593 (601)
Q Consensus 592 v~ 593 (601)
+.
T Consensus 396 l~ 397 (732)
T TIGR00603 396 LT 397 (732)
T ss_pred HH
Confidence 43
No 87
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.34 E-value=5.5e-12 Score=120.41 Aligned_cols=128 Identities=26% Similarity=0.278 Sum_probs=85.0
Q ss_pred CCcHHHHHHHHHHHh------cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYY------TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~------~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
+|+++|.+++..+.. ...++++.+|||||||.+++..+.+.. . +++|++|++.|+.|+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~--~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R--KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C--EEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c--ceeEecCHHHHHHHHHHH
Confidence 589999999999874 268999999999999999887555532 1 899999999999999999
Q ss_pred HHhhcCCCCcEEEEEe------------CCCccc---hhhcCCccEEEEChhhHHHHHccCC---------CCCccCCcc
Q 007492 515 FSSRLSPLNMIVRELT------------GDMQLS---RNELEETQMIVTTPEKWDVITRKSS---------DMSLSMLVK 570 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~------------Gd~~~~---~~~~~~~~IiVtTPekld~l~r~~~---------~~~~~~~v~ 570 (601)
|....... ..+.... ...... ........++++|..+|........ .........
T Consensus 70 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 70 FDDFGSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHSTTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHhhhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 96554332 1111110 000000 1123478999999999844332211 001223468
Q ss_pred EEEeccCcccCC
Q 007492 571 LLIIDEVHLLND 582 (601)
Q Consensus 571 llIiDEaH~l~d 582 (601)
+||+||||++..
T Consensus 149 ~vI~DEaH~~~~ 160 (184)
T PF04851_consen 149 LVIIDEAHHYPS 160 (184)
T ss_dssp EEEEETGGCTHH
T ss_pred EEEEehhhhcCC
Confidence 999999999974
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.34 E-value=6.7e-12 Score=137.79 Aligned_cols=126 Identities=21% Similarity=0.173 Sum_probs=90.5
Q ss_pred CCCcHHHHHHHHHHHhc---CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 440 KSLNRIQSRIFQTVYYT---NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~---~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
..|+++|.+++.++.+. ++..++++|||+|||.+++..+-.. ..+++||||+++|+.|+...+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-------------~~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------------KRSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-------------cCCEEEEECcHHHHHHHHHHHH
Confidence 37999999999999854 8899999999999999998866542 2239999999999999987777
Q ss_pred hhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCCh
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG 585 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg 585 (601)
+.+... ..++.+.|+...... ..|.|+|...+.... .......+...+||+||||++..+..
T Consensus 102 ~~~~~~-~~~g~~~~~~~~~~~----~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~~ 163 (442)
T COG1061 102 KFLLLN-DEIGIYGGGEKELEP----AKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPSY 163 (442)
T ss_pred HhcCCc-cccceecCceeccCC----CcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHHH
Confidence 655422 245555555433221 579999998852211 11111122478999999999987433
No 89
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.31 E-value=7e-12 Score=138.90 Aligned_cols=140 Identities=21% Similarity=0.327 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 430 EFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 430 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
..++..| ||..+++-|.++|..++ ++.|+++..|||+||+++|.+|.+-. .+-+|+|.|..+|..
T Consensus 7 ~~L~~~f-Gy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVF-GYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL-------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHh-CccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc-------------CCCEEEECchHHHHH
Confidence 3455556 89999999999999998 78999999999999999999998752 347999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhH--HHHHccCCCCCccCCccEEEeccCccc
Q 007492 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKW--DVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 510 Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekl--d~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
.++..+.. .|+.+..+.+..+..... ....+++.-+||++ ..+...-.. ..+.+++|||||++
T Consensus 72 DQV~~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~----~~i~l~vIDEAHCi 143 (590)
T COG0514 72 DQVDQLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKR----LPISLVAIDEAHCI 143 (590)
T ss_pred HHHHHHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHh----CCCceEEechHHHH
Confidence 99999876 478888877765543221 13489999999996 222211111 14889999999999
Q ss_pred CC---CChHHHHHHH
Q 007492 581 ND---DRGPVIEALV 592 (601)
Q Consensus 581 ~d---~rg~~le~iv 592 (601)
.. +|.|.|..+-
T Consensus 144 SqWGhdFRP~Y~~lg 158 (590)
T COG0514 144 SQWGHDFRPDYRRLG 158 (590)
T ss_pred hhcCCccCHhHHHHH
Confidence 86 7999887654
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.23 E-value=2.2e-11 Score=126.95 Aligned_cols=139 Identities=20% Similarity=0.313 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 429 DEFAQAAFHGYKSL-NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 429 ~~~~~~~f~g~~~l-~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.+-+++.| |+..+ ++.|.+++..+.+.+.++.||+|||+||+++|.||.|- .+...|++.|..||
T Consensus 8 reaLKK~F-Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~-------------~~gITIV~SPLiAL 73 (641)
T KOG0352|consen 8 REALKKLF-GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV-------------HGGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHh-CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH-------------hCCeEEEehHHHHH
Confidence 34445556 55443 79999999999988999999999999999999999875 23488999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCccchh---------hcCCccEEEEChhhH-----HHHHccCCCCCccCCccEEE
Q 007492 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---------ELEETQMIVTTPEKW-----DVITRKSSDMSLSMLVKLLI 573 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---------~~~~~~IiVtTPekl-----d~l~r~~~~~~~~~~v~llI 573 (601)
...+...+.++ .+.+..+.+.++...+ +.....|+.-|||.- .-+....... ..++++|
T Consensus 74 IkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r---~~L~Y~v 146 (641)
T KOG0352|consen 74 IKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANR---DVLRYIV 146 (641)
T ss_pred HHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhh---ceeeeEE
Confidence 99999988653 3455555554443221 123678999999972 2222222222 2588999
Q ss_pred eccCcccCC---CChHHH
Q 007492 574 IDEVHLLND---DRGPVI 588 (601)
Q Consensus 574 iDEaH~l~d---~rg~~l 588 (601)
+||||+... +|.|.+
T Consensus 147 VDEAHCVSQWGHDFRPDY 164 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDY 164 (641)
T ss_pred echhhhHhhhccccCcch
Confidence 999999864 677765
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.23 E-value=4.3e-11 Score=139.70 Aligned_cols=147 Identities=22% Similarity=0.165 Sum_probs=97.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
...|+|+|..+.... ..+..++|.||||+|||.++++.+...+.. ....+++|..||++++++++.++.+.
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 348999999885443 246789999999999999998877654432 13468999999999999999998764
Q ss_pred cCCC--CcEEEEEeCCCccch-----------------------hhc-------CCccEEEEChhhH--HHHHccCCCCC
Q 007492 519 LSPL--NMIVRELTGDMQLSR-----------------------NEL-------EETQMIVTTPEKW--DVITRKSSDMS 564 (601)
Q Consensus 519 l~~~--~i~V~~l~Gd~~~~~-----------------------~~~-------~~~~IiVtTPekl--d~l~r~~~~~~ 564 (601)
++.. ...|...+|...+.. ..+ --+.|+|||+..+ .++..+...+.
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 3321 346777777654221 001 1279999999984 33333222211
Q ss_pred ccC-CccEEEeccCcccCCCChHHHHHHHHH
Q 007492 565 LSM-LVKLLIIDEVHLLNDDRGPVIEALVAR 594 (601)
Q Consensus 565 ~~~-~v~llIiDEaH~l~d~rg~~le~iv~r 594 (601)
... .-++|||||+|.+-......++.++..
T Consensus 435 ~~~La~svvIiDEVHAyD~ym~~lL~~~L~~ 465 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAYDAYMYGLLEAVLKA 465 (878)
T ss_pred HHhhccCeEEEechhhCCHHHHHHHHHHHHH
Confidence 110 125899999999964444555555543
No 92
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.22 E-value=2.6e-11 Score=136.66 Aligned_cols=144 Identities=27% Similarity=0.406 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|..||.+.+... ..++.++|+|||.+|||++--.+|-..+.. .+..-+||++|+++|++|+......++.
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLRe--------sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRE--------SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhh--------cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 5889999999886 478999999999999999987777666654 3567899999999999999988888873
Q ss_pred -CCCcEEEEEeCCCccchhh-cCCccEEEEChhhHHHHHcc-CCCCCccCCccEEEeccCcccCC-CChHHHHHHHH
Q 007492 521 -PLNMIVRELTGDMQLSRNE-LEETQMIVTTPEKWDVITRK-SSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVA 593 (601)
Q Consensus 521 -~~~i~V~~l~Gd~~~~~~~-~~~~~IiVtTPekld~l~r~-~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~ 593 (601)
..-.+...+.|++...-+. .-+|||+||-|+.++.+.-. .....+..+++++|+||+|+++. +.|-.+|.++.
T Consensus 582 ~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 2222233344444322111 23799999999999665543 23344556799999999999997 67788887764
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=4.5e-11 Score=133.17 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=77.5
Q ss_pred eEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-
Q 007492 461 LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE- 539 (601)
Q Consensus 461 lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~- 539 (601)
|+.||||||||.+|+..+.+.+. .+.+++|++|+++|+.|++..|++++ |..+..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~----------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA----------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH
Confidence 57899999999999877665543 36789999999999999999999876 56788899987654321
Q ss_pred ------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 540 ------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 540 ------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
...++|+|||+..+- .....+++|||||+|...
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccc
Confidence 135899999998641 122358999999999876
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.19 E-value=6.1e-11 Score=131.53 Aligned_cols=124 Identities=26% Similarity=0.400 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.||..|.+++..+..+ ..|=|+++--|||||.||+++++..+. .|+++..+|||--||.|-+..+
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----------~G~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----------AGYQAALMAPTEILAEQHYESL 331 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----------cCCeeEEeccHHHHHHHHHHHH
Confidence 7999999999998743 347799999999999999999999875 4899999999999999999999
Q ss_pred HhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
.+.+.++|+.|..+||.+.-..+. ...++|+|+|..-+ ..... |. ++.++||||=|+.+
T Consensus 332 ~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~--F~-~LgLVIiDEQHRFG 397 (677)
T COG1200 332 RKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVE--FH-NLGLVIIDEQHRFG 397 (677)
T ss_pred HHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hccee--ec-ceeEEEEecccccc
Confidence 999999999999999987755332 13599999997543 22222 32 58999999999986
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.19 E-value=8.5e-11 Score=140.84 Aligned_cols=133 Identities=21% Similarity=0.203 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHHHHHh----cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 440 KSLNRIQSRIFQTVYY----TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~----~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..|+++|..++..+.. ..+++|+++|||||||.+++..+. ++.+. ....+||||+|+++|+.|....|
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~~-------~~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLKA-------KRFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHhc-------CccCeEEEEecHHHHHHHHHHHH
Confidence 3689999999987752 246899999999999999655444 34331 23469999999999999999999
Q ss_pred HhhcCCCCcEEEEEeCCCccchh-hcCCccEEEEChhhH-HHHHccCC--CCCccCCccEEEeccCccc
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRN-ELEETQMIVTTPEKW-DVITRKSS--DMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~-~~~~~~IiVtTPekl-d~l~r~~~--~~~~~~~v~llIiDEaH~l 580 (601)
.......+..+..+.+-..+... ......|+|||++++ ..+..... .......+++|||||||+-
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred HhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 88643222222222221111111 123579999999996 22222111 1012235889999999995
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.16 E-value=8.7e-11 Score=133.16 Aligned_cols=146 Identities=23% Similarity=0.401 Sum_probs=121.4
Q ss_pred cCCCCCcHHHHHHH--HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIF--QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i--~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.|...++.||..|+ |.++ .++|++..+||++|||+|+.+-+++++.. ...+++.+.|..+-+.+-...
T Consensus 219 kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~---------~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 219 KGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLC---------RRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHH---------HhhceeEecceeehhHHHHhh
Confidence 67889999999998 6665 78999999999999999999999998876 356889999999999999999
Q ss_pred HHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHcc---CCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 515 FSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRK---SSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~---~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
+..++...|+.|.+++|.....+. .....|.|||-|+-..+... .+.+. .+++||+||.|++.| .||..+|.
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~~-~k~~sv~i~tiEkanslin~lie~g~~~---~~g~vvVdElhmi~d~~rg~~lE~ 364 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEKR-RKRESVAIATIEKANSLINSLIEQGRLD---FLGMVVVDELHMIGDKGRGAILEL 364 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCCc-ccceeeeeeehHhhHhHHHHHHhcCCcc---ccCcEEEeeeeeeeccccchHHHH
Confidence 999999999999999986665433 34578999999994222222 12333 489999999999999 89999999
Q ss_pred HHHHHH
Q 007492 591 LVARTL 596 (601)
Q Consensus 591 iv~r~~ 596 (601)
++++++
T Consensus 365 ~l~k~~ 370 (1008)
T KOG0950|consen 365 LLAKIL 370 (1008)
T ss_pred HHHHHH
Confidence 999876
No 97
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.15 E-value=2.5e-11 Score=126.59 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=70.6
Q ss_pred CCcEEEEEccChhHHHHHHH---HHHhhcCCCCcEEEEEeCCCccch---hhcCCccEEEEChhhHH-HHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTR---TFSSRLSPLNMIVRELTGDMQLSR---NELEETQMIVTTPEKWD-VITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~---~~~~~l~~~~i~V~~l~Gd~~~~~---~~~~~~~IiVtTPekld-~l~r~~~~~~~~ 566 (601)
+.+++||+-|.|+|+.|.++ +|+.......++-..+.|+..... +...+++|+|+||++++ .+..+...+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt-- 362 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLT-- 362 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeee--
Confidence 46899999999999999998 555555544555556667655432 33468999999999974 4444333333
Q ss_pred CCccEEEeccCcccCCCChHHHHHHHHHHHhhh
Q 007492 567 MLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV 599 (601)
Q Consensus 567 ~~v~llIiDEaH~l~d~rg~~le~iv~r~~r~~ 599 (601)
.++++++||++.++. ..+...+.|+..|+
T Consensus 363 -~crFlvlDead~lL~---qgy~d~I~r~h~qi 391 (725)
T KOG0349|consen 363 -HCRFLVLDEADLLLG---QGYDDKIYRFHGQI 391 (725)
T ss_pred -eeEEEEecchhhhhh---cccHHHHHHHhccc
Confidence 599999999999984 45555566665543
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=1.2e-10 Score=133.84 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=100.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHH-HHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL-HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il-~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
|. .|+++|.-.--. ++.| -+..++||+|||++|.+|++ +.+. +..+-+++||..||.|.+..+.
T Consensus 79 g~-~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 79 GM-RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred CC-CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHH
Confidence 44 678888876644 4445 38999999999999999995 5542 3457799999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh-hcCCccEEEEChhhH--HHHHccCCC---CCccCCccEEEeccCcccC
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN-ELEETQMIVTTPEKW--DVITRKSSD---MSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~-~~~~~~IiVtTPekl--d~l~r~~~~---~~~~~~v~llIiDEaH~l~ 581 (601)
..+..+|++|+.++|+++...+ ..-.++|+++||..+ |.+..+... -...+.+.++||||||.|+
T Consensus 144 ~l~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 144 PLYEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999999999998876543 334699999999996 666544311 0123458899999999976
No 99
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.09 E-value=7.1e-10 Score=130.07 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=66.0
Q ss_pred HhcCCCCCcHHHHH---HHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 435 AFHGYKSLNRIQSR---IFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 435 ~f~g~~~l~~iQ~~---~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.+.|| +.++-|.+ ++..++..+..++++||||+|||++|++|++... .+.++||++||++|++|+
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHH
Confidence 34566 68999999 5555666788999999999999999999988642 256899999999999999
Q ss_pred H-HHHHhhcCCCCcEEEEEeCC
Q 007492 512 T-RTFSSRLSPLNMIVRELTGD 532 (601)
Q Consensus 512 ~-~~~~~~l~~~~i~V~~l~Gd 532 (601)
. ..+..+.+.+++++..+.|+
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~ 329 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGP 329 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECC
Confidence 5 44554444466666666654
No 100
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.07 E-value=9.9e-10 Score=124.13 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc-CC--CCcEEEEE
Q 007492 453 VYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL-SP--LNMIVREL 529 (601)
Q Consensus 453 ~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l-~~--~~i~V~~l 529 (601)
++..+..+++.||||+|||++|++|++..+.. ..+.++||++||++|+.|++..+..+. +. ..+++..+
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~--------~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~l 83 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKE--------RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFF 83 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh--------ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 34568899999999999999999999987653 135799999999999999999877665 22 24444444
Q ss_pred eC
Q 007492 530 TG 531 (601)
Q Consensus 530 ~G 531 (601)
.|
T Consensus 84 kG 85 (636)
T TIGR03117 84 PG 85 (636)
T ss_pred EC
Confidence 43
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.04 E-value=2.2e-09 Score=122.66 Aligned_cols=141 Identities=17% Similarity=0.260 Sum_probs=102.9
Q ss_pred hhhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 425 IKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 425 i~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
.+++.+++..+. |+ .|+..|.-+...++ .|.++-+.||||.|||...++..+-.-. .+.+++||+||
T Consensus 68 ~e~~~~fF~k~~-G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~----------kgkr~yii~PT 134 (1187)
T COG1110 68 YEEFEEFFKKAT-GF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAK----------KGKRVYIIVPT 134 (1187)
T ss_pred HHHHHHHHHHhh-CC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHh----------cCCeEEEEecC
Confidence 344455555555 65 89999999999988 7999999999999999987776554322 46899999999
Q ss_pred hhHHHHHHHHHHhhcCCCC-cEEEE-EeCCCccchhh-----c--CCccEEEEChhhHHHHHccCCCCCccCCccEEEec
Q 007492 505 KALAAEVTRTFSSRLSPLN-MIVRE-LTGDMQLSRNE-----L--EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIID 575 (601)
Q Consensus 505 raLa~Q~~~~~~~~l~~~~-i~V~~-l~Gd~~~~~~~-----~--~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiD 575 (601)
+.||.|+++++.++....| ..+.. ++|..+....+ + .+.+|+|||..-+.--...-... +++++++|
T Consensus 135 ~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~----kFdfifVD 210 (1187)
T COG1110 135 TTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKL----KFDFIFVD 210 (1187)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhccc----CCCEEEEc
Confidence 9999999999999886554 33332 67766554321 2 46999999987542222111111 47899999
Q ss_pred cCcccCC
Q 007492 576 EVHLLND 582 (601)
Q Consensus 576 EaH~l~d 582 (601)
.+|.++-
T Consensus 211 DVDA~Lk 217 (1187)
T COG1110 211 DVDAILK 217 (1187)
T ss_pred cHHHHHh
Confidence 9999875
No 102
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.04 E-value=1.9e-09 Score=127.59 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=62.1
Q ss_pred cCCCCCcHHHHHHHHH---HHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQT---VYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~---~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
.||+ +++.|.+.+.. ++..+.++++.||||+|||.+|++|++.... .+.++||.+||++|..|++.
T Consensus 242 ~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----------~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----------TEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----------CCCeEEEEeCcHHHHHHHHH
Confidence 5674 89999985553 3446889999999999999999999987543 24589999999999999865
Q ss_pred H-HHhhcCCC--CcEEEEEeCC
Q 007492 514 T-FSSRLSPL--NMIVRELTGD 532 (601)
Q Consensus 514 ~-~~~~l~~~--~i~V~~l~Gd 532 (601)
+ +....+.+ .+++..+.|.
T Consensus 311 ~~~~~l~~~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 311 KDIPLLNEILNFKINAALIKGK 332 (850)
T ss_pred HHHHHHHHHcCCCceEEEEEcc
Confidence 3 33222222 3556555553
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=4.8e-10 Score=128.86 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=99.2
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++++|.-.--. ++ ..-+..++||.|||++|.+|++..... +..|.+|+|+..||.+....+..++.
T Consensus 82 ~~ydVQliGgl~-L~--~G~IaEm~TGEGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMV-LD--SNRIAEMRTGEGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchH-hc--CCccccccCCCCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 466777654333 33 345889999999999999999866543 45599999999999999999999999
Q ss_pred CCCcEEEEEeCCCccchhhc-CCccEEEEChhhH--HHHHccC-CCC--CccCCccEEEeccCcccCC
Q 007492 521 PLNMIVRELTGDMQLSRNEL-EETQMIVTTPEKW--DVITRKS-SDM--SLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~~~-~~~~IiVtTPekl--d~l~r~~-~~~--~~~~~v~llIiDEaH~l~d 582 (601)
.+|++|.+++|++....+.. -.++|+++||..| |.+..+- ... ...+.+.++||||||.++-
T Consensus 149 ~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred hcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 99999999999887644333 3799999999995 7666541 111 1224588999999999874
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.03 E-value=2.1e-09 Score=125.54 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.-|+-|..||..+... ..|=|||+--|-|||.|||=+++..+. ++.+|.++|||.-||+|-+++|
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----------~GKQVAvLVPTTlLA~QHy~tF 663 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----------DGKQVAVLVPTTLLAQQHYETF 663 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----------CCCeEEEEcccHHhHHHHHHHH
Confidence 5699999999998643 457799999999999999999998775 4789999999999999999999
Q ss_pred HhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
+.|+++++++|..+..-.+...+. ....+|||+|..-| .+ +..|. .+.||||||-|+.+=
T Consensus 664 keRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~k--dv~Fk-dLGLlIIDEEqRFGV 730 (1139)
T COG1197 664 KERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SK--DVKFK-DLGLLIIDEEQRFGV 730 (1139)
T ss_pred HHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CC--CcEEe-cCCeEEEechhhcCc
Confidence 999999999999888766543321 24799999996543 23 34443 499999999999874
No 105
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.00 E-value=1e-09 Score=113.03 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=107.5
Q ss_pred chhhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 424 EIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 424 ~i~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
+-.+..++++..| ..+.++|.|..++.+.+ .++++++..|||.||+++|.+|.|- ...-+++|+|
T Consensus 78 ws~e~~~ilk~~f-~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~-------------adg~alvi~p 142 (695)
T KOG0353|consen 78 WSDEAKDILKEQF-HLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALC-------------ADGFALVICP 142 (695)
T ss_pred CchHHHHHHHHHh-hHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHh-------------cCCceEeech
Confidence 3445667777777 56789999999999988 7999999999999999999999975 3457899999
Q ss_pred ChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---------hcCCccEEEEChhhH---HHHHc---cCCCCCccCC
Q 007492 504 MKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---------ELEETQMIVTTPEKW---DVITR---KSSDMSLSML 568 (601)
Q Consensus 504 traLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---------~~~~~~IiVtTPekl---d~l~r---~~~~~~~~~~ 568 (601)
...|+..+.-.++. +||....+....+.... .-.+..+|..|||++ ..+.. +..... .
T Consensus 143 lislmedqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~---~ 215 (695)
T KOG0353|consen 143 LISLMEDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG---F 215 (695)
T ss_pred hHHHHHHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc---e
Confidence 99999988877765 46666555554443211 113578999999996 22222 222222 4
Q ss_pred ccEEEeccCcccCC---CChHHHHH
Q 007492 569 VKLLIIDEVHLLND---DRGPVIEA 590 (601)
Q Consensus 569 v~llIiDEaH~l~d---~rg~~le~ 590 (601)
++++-|||+|+... +|.|.+..
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~ 240 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKA 240 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHH
Confidence 78999999999864 68877754
No 106
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.99 E-value=5.6e-10 Score=130.45 Aligned_cols=144 Identities=22% Similarity=0.263 Sum_probs=108.9
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 430 EFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 430 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
..+...| |...+++-|.+++.+++ .|.+.+|-+|||+||+++|.||++- .+...|+|.|..+|..
T Consensus 254 ~~l~~~F-g~~~FR~~Q~eaI~~~l-~Gkd~fvlmpTG~GKSLCYQlPA~l-------------~~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 254 LLLKEVF-GHKGFRPNQLEAINATL-SGKDCFVLMPTGGGKSLCYQLPALL-------------LGGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHh-ccccCChhHHHHHHHHH-cCCceEEEeecCCceeeEeeccccc-------------cCCceEEeccHHHHHH
Confidence 3444455 89999999999999877 7999999999999999999999864 2458899999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCccchh-----hc--C--CccEEEEChhhHH---HHHccCCCCCccCCccEEEeccC
Q 007492 510 EVTRTFSSRLSPLNMIVRELTGDMQLSRN-----EL--E--ETQMIVTTPEKWD---VITRKSSDMSLSMLVKLLIIDEV 577 (601)
Q Consensus 510 Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~-----~~--~--~~~IiVtTPekld---~l~r~~~~~~~~~~v~llIiDEa 577 (601)
.++..+. ..+|....++|+.....+ .+ . ..+|+.-|||++- .+.+...++.-...+.++|||||
T Consensus 319 DQv~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 9988873 357888888888765322 11 2 5899999999962 12222222222223789999999
Q ss_pred cccCC---CChHHHHHHH
Q 007492 578 HLLND---DRGPVIEALV 592 (601)
Q Consensus 578 H~l~d---~rg~~le~iv 592 (601)
|+... +|.|.+..+-
T Consensus 395 HCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred HHhhhhcccccHHHHHHH
Confidence 99875 6888876553
No 107
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.95 E-value=6.1e-09 Score=108.24 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHH---HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTV---YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~---l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.++|.|.+....+ +..+.++++.||||+|||+++++|++..+..+.. ...+.+++|.++|.++..|....+++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~----~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE----RIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc----cccccceeEEeccHHHHHHHHHHHHh
Confidence 3699999954443 3468899999999999999999999876654210 00234899999999998888777765
Q ss_pred h
Q 007492 518 R 518 (601)
Q Consensus 518 ~ 518 (601)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 108
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.95 E-value=6.1e-09 Score=108.24 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHH---HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTV---YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~---l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.++|.|.+....+ +..+.++++.||||+|||+++++|++..+..+.. ...+.+++|.++|.++..|....+++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~----~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE----RIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc----cccccceeEEeccHHHHHHHHHHHHh
Confidence 3699999954443 3468899999999999999999999876654210 00234899999999998888777765
Q ss_pred h
Q 007492 518 R 518 (601)
Q Consensus 518 ~ 518 (601)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.87 E-value=9.2e-09 Score=118.56 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=81.7
Q ss_pred CcHHHHHHHHHHHhc---------CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 442 LNRIQSRIFQTVYYT---------NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~---------~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
++..|..++..++.. .+..+|+.|||||||++++..+...+.. ....++|+|+|+++|+.|+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--------~~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--------LKNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--------cCCCeEEEEECcHHHHHHHH
Confidence 677888888776432 3579999999999999987766544322 24679999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCC-ccchhh-cCCccEEEEChhhHHH-HHccCCCCCccCCccEEEeccCcccC
Q 007492 513 RTFSSRLSPLNMIVRELTGDM-QLSRNE-LEETQMIVTTPEKWDV-ITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~Gd~-~~~~~~-~~~~~IiVtTPekld~-l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
..|...+... +. ..+.. .+.... .....|+|||.+++.. +............--+||+||||+..
T Consensus 311 ~~f~~~~~~~---~~-~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 311 KEFQSLQKDC---AE-RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred HHHHhhCCCC---Cc-ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 9998875321 10 00111 011110 1246899999999843 22211111110011289999999976
No 110
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.85 E-value=3.1e-08 Score=118.20 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=64.4
Q ss_pred HHHhcCCCCCcHHHHHHH---HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 433 QAAFHGYKSLNRIQSRIF---QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 433 ~~~f~g~~~l~~iQ~~~i---~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
...+.|| .+++-|.+.. ..++..+..++|.||||+|||++|++|++..... .+.++||-++|++|.+
T Consensus 250 ~~~~~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---------~~~~vvIsT~T~~LQ~ 319 (928)
T PRK08074 250 SLAMPKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---------KEEPVVISTYTIQLQQ 319 (928)
T ss_pred HHhCCCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---------cCCeEEEEcCCHHHHH
Confidence 3445666 6899999944 4456668899999999999999999999765432 4679999999999999
Q ss_pred HHHHH----HHhhcCCCCcEEEEEeC
Q 007492 510 EVTRT----FSSRLSPLNMIVRELTG 531 (601)
Q Consensus 510 Q~~~~----~~~~l~~~~i~V~~l~G 531 (601)
|+..+ +.+.+ +..+++..+.|
T Consensus 320 Ql~~kDiP~L~~~~-~~~~~~~~lKG 344 (928)
T PRK08074 320 QLLEKDIPLLQKIF-PFPVEAALLKG 344 (928)
T ss_pred HHHHhhHHHHHHHc-CCCceEEEEEc
Confidence 98763 33332 23445554444
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.1e-08 Score=116.89 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=99.1
Q ss_pred CCCCcHHHHHHHHHHHhc---CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 439 YKSLNRIQSRIFQTVYYT---NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~---~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
...+|+-|..++..+..+ ....|+.+.||||||.+|+-.|-..+.+ |..+|+++|-.+|-.|+..+|
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~----------GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ----------GKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc----------CCEEEEEeccccchHHHHHHH
Confidence 457999999999998755 3688999999999999999988887764 689999999999999999999
Q ss_pred HhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCccc
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
..++. .+|..++++.+...+. ..++.|+|+| ++.-+..+.++++|||||-|--
T Consensus 266 ~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~ 325 (730)
T COG1198 266 KARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDS 325 (730)
T ss_pred HHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccc
Confidence 99874 7788999988765432 2579999999 3333334456999999999974
No 112
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=3.2e-08 Score=114.18 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=99.2
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++++|...--. ++ .--+..+.||+|||+++.+|++-... .+..+.+++|+..||.+=+..+..++.
T Consensus 82 ~~ydVQliGg~~-Lh--~G~iaEM~TGEGKTLvA~l~a~l~al----------~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 82 RHFDVQLIGGMT-LH--EGKIAEMRTGEGKTLVGTLAVYLNAL----------SGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred CcchhHHHhhhH-hc--cCccccccCCCCChHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 567777765433 33 34578999999999999999876544 477899999999999999999999999
Q ss_pred CCCcEEEEEeCCCccc-hhhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 521 PLNMIVRELTGDMQLS-RNELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~-~~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
.+|++|++++|+++.. ++..-.++|+++|..-+ |.+...-. .-...+.+.+.||||+|.++
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999999999987654 33445699999999884 66654321 11123458899999999975
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.74 E-value=5.3e-08 Score=109.98 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=88.5
Q ss_pred CCCCcHHHHHHHHHHHh---c-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 439 YKSLNRIQSRIFQTVYY---T-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~---~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
-..++.+|..|+..+.+ . ...+|+++.||+|||.+|+-.|.+ |.++ ..-.+||+||-.++|+.|.+..
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~r-L~r~-------~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDR-LIKS-------GWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHH-HHhc-------chhheeeEEechHHHHHHHHHH
Confidence 34789999999877542 3 346899999999999998765544 4442 2456899999999999999999
Q ss_pred HHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHcc-CCCCCc-cCCccEEEeccCcc
Q 007492 515 FSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRK-SSDMSL-SMLVKLLIIDEVHL 579 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~-~~~~~~-~~~v~llIiDEaH~ 579 (601)
|...+. .+-.+..+++..... .++|.|+|...+ ..+..+ .....+ ...++||||||||+
T Consensus 235 f~~~~P-~~~~~n~i~~~~~~~-----s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 235 FEDFLP-FGTKMNKIEDKKGDT-----SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred HHHhCC-CccceeeeecccCCc-----ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh
Confidence 887664 443343333322211 479999999997 444433 222222 12478999999998
No 114
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.68 E-value=1.3e-07 Score=113.69 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=68.9
Q ss_pred HHHHHhcCCceeEeccCCCchHHHHHHHH-HHHHhhhcccCCCCCCCcEEEEEcc----ChhHHHHHHHHHHhhc-CCCC
Q 007492 450 FQTVYYTNENILVCAPTGAGKTNIAMISI-LHEIGQHFRDGYLHKDEFKIVYVAP----MKALAAEVTRTFSSRL-SPLN 523 (601)
Q Consensus 450 i~~~l~~~~n~lv~ApTGsGKT~va~l~i-l~~l~~~~~~~~~~~~~~kvl~laP----traLa~Q~~~~~~~~l-~~~~ 523 (601)
|..++..+..++|+|+||||||. .+|. +..... | ...+|++.-| +++||.++...+...+ ...|
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----g----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----G----VKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----C----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 33344567788999999999999 4663 332211 1 1234555557 4577778777776533 2223
Q ss_pred cEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCc-ccCC
Q 007492 524 MIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVH-LLND 582 (601)
Q Consensus 524 i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH-~l~d 582 (601)
..| ....+...+++|+|+||+++ +.+... . +...+++||||||| ++.+
T Consensus 152 Y~v-------rf~~~~s~~t~I~v~TpG~LL~~l~~d-~---~Ls~~~~IIIDEAHERsLn 201 (1294)
T PRK11131 152 YKV-------RFNDQVSDNTMVKLMTDGILLAEIQQD-R---LLMQYDTIIIDEAHERSLN 201 (1294)
T ss_pred eee-------cCccccCCCCCEEEEChHHHHHHHhcC-C---ccccCcEEEecCccccccc
Confidence 322 11222234689999999996 555432 2 23469999999999 4554
No 115
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=4.3e-08 Score=112.64 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=101.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|+ .|+++|.-.--. ++.|. +....||+|||+++.+|++.... .+..+.+++|+--||.+=+..+..
T Consensus 78 g~-~~~dvQlig~l~-l~~G~--iaEm~TGEGKTLvA~l~a~l~al----------~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 78 GL-RPFDVQIIGGIV-LHEGN--IAEMKTGEGKTLTATLPVYLNAL----------TGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred CC-CCchhHHHHHHH-HhcCC--cccccCCCCCcHHHHHHHHHHHH----------cCCCeEEEeccHHHHHhhHHHHHH
Confidence 44 678888876554 44554 89999999999999999877654 478899999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccc-hhhcCCccEEEEChhhH--HHHHccC---CCCCccCCccEEEeccCcccC
Q 007492 518 RLSPLNMIVRELTGDMQLS-RNELEETQMIVTTPEKW--DVITRKS---SDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~-~~~~~~~~IiVtTPekl--d~l~r~~---~~~~~~~~v~llIiDEaH~l~ 581 (601)
.+..+|++|++++|++... ++..-.++|+.+|..-| |.+...- ......+.+.+.||||||.++
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999999987654 34456899999999984 5555431 111122357899999999875
No 116
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.65 E-value=1.6e-07 Score=97.06 Aligned_cols=128 Identities=25% Similarity=0.328 Sum_probs=78.7
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCC--
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDM-- 533 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~-- 533 (601)
....++++-..|+|||..++..+.. +..... ......+|||||. .+..++..++.+...+..+++..+.|..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~----~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~ 97 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISY-LKNEFP----QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSER 97 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHH-HHHCCT----TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhhh-hhhccc----cccccceeEeecc-chhhhhhhhhcccccccccccccccccccc
Confidence 3568899999999999987775543 322110 0112259999999 8889999999999876567888888876
Q ss_pred -ccchhhcCCccEEEEChhhHHHHHccCC--CCCccCCccEEEeccCcccCCCChHHHHH
Q 007492 534 -QLSRNELEETQMIVTTPEKWDVITRKSS--DMSLSMLVKLLIIDEVHLLNDDRGPVIEA 590 (601)
Q Consensus 534 -~~~~~~~~~~~IiVtTPekld~l~r~~~--~~~~~~~v~llIiDEaH~l~d~rg~~le~ 590 (601)
..........+|+|+|++.+........ .+.-. ..++||+||+|.+-+........
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~-~~~~vIvDEaH~~k~~~s~~~~~ 156 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQI-KWDRVIVDEAHRLKNKDSKRYKA 156 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTS-EEEEEEETTGGGGTTTTSHHHHH
T ss_pred ccccccccccceeeeccccccccccccccccccccc-cceeEEEeccccccccccccccc
Confidence 1223334678999999998751111110 01111 37899999999996544444443
No 117
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.4e-07 Score=94.09 Aligned_cols=129 Identities=23% Similarity=0.273 Sum_probs=96.5
Q ss_pred CCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
+|++.|..+-..++ ++.++.||.|-||||||....-.|-..+. .|.++.+..|....|.+++.+++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~----------~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN----------QGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh----------cCCeEEEecCcccchHHHHHHHHH
Confidence 89999998877665 45789999999999999874444443332 588999999999999999999998
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r 594 (601)
-+. ++.+..++|+....-+ ++++|+|...+-. |-+.++++||||+|..-=...+.++.-+..
T Consensus 167 aF~--~~~I~~Lyg~S~~~fr----~plvVaTtHQLlr---------Fk~aFD~liIDEVDAFP~~~d~~L~~Av~~ 228 (441)
T COG4098 167 AFS--NCDIDLLYGDSDSYFR----APLVVATTHQLLR---------FKQAFDLLIIDEVDAFPFSDDQSLQYAVKK 228 (441)
T ss_pred hhc--cCCeeeEecCCchhcc----ccEEEEehHHHHH---------HHhhccEEEEeccccccccCCHHHHHHHHH
Confidence 776 4567889998764433 7899999877522 223578999999999753233555554443
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.60 E-value=1.9e-07 Score=108.86 Aligned_cols=146 Identities=23% Similarity=0.347 Sum_probs=94.1
Q ss_pred CCcHHHHHHHHHHHhc--CC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVYYT--NE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~--~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
...+.|..++..+... .. .++++||||+|||.+++.+++..+... .....+++|+.|++++++++++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc------ccccceEEEEccHHHHHHHHHHHHHh
Confidence 3488899998887633 33 788999999999999999998877652 12578999999999999999999998
Q ss_pred hcCCCCcEEEEEeCCCccc----hhh-------------cCCccEEEEChhhHHHHHccCCCCC---ccCCccEEEeccC
Q 007492 518 RLSPLNMIVRELTGDMQLS----RNE-------------LEETQMIVTTPEKWDVITRKSSDMS---LSMLVKLLIIDEV 577 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~----~~~-------------~~~~~IiVtTPekld~l~r~~~~~~---~~~~v~llIiDEa 577 (601)
.+...++....++|..... ... ..-..++++||-.+-...-+..... .. .-.++|+||+
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~S~vIlDE~ 347 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALL-LTSLVILDEV 347 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHH-HhhchhhccH
Confidence 7765543333234422211 100 0124556666665422111111111 01 2468999999
Q ss_pred cccCCC-ChHHHHHHHH
Q 007492 578 HLLNDD-RGPVIEALVA 593 (601)
Q Consensus 578 H~l~d~-rg~~le~iv~ 593 (601)
|.+.++ .-..+..++.
T Consensus 348 h~~~~~~~~~~l~~~i~ 364 (733)
T COG1203 348 HLYADETMLAALLALLE 364 (733)
T ss_pred HhhcccchHHHHHHHHH
Confidence 999986 4444444443
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.55 E-value=4.2e-07 Score=109.61 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=74.4
Q ss_pred HHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE
Q 007492 450 FQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL 529 (601)
Q Consensus 450 i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l 529 (601)
|..++.++..++|+|+||||||.. +|.+-. .. |. ....+|++.-|.|--|..+..++.+.+ |..++..
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTTq--lPq~ll--e~---~~--~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTTQ--LPKICL--EL---GR--GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHHH--HHHHHH--Hc---CC--CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 334455678889999999999994 453321 10 10 123467777898888888887777655 3334444
Q ss_pred eCC-CccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCc-ccCC
Q 007492 530 TGD-MQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVH-LLND 582 (601)
Q Consensus 530 ~Gd-~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH-~l~d 582 (601)
.|. .........+++|.++||+.+ ..+.. .. +...+++||||||| +.++
T Consensus 143 VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~-d~---~L~~~~~IIIDEaHERsL~ 194 (1283)
T TIGR01967 143 VGYKVRFHDQVSSNTLVKLMTDGILLAETQQ-DR---FLSRYDTIIIDEAHERSLN 194 (1283)
T ss_pred EeeEEcCCcccCCCceeeeccccHHHHHhhh-Cc---ccccCcEEEEcCcchhhcc
Confidence 442 222223335689999999996 44433 22 23469999999999 4555
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=2.2e-07 Score=105.05 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=102.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|+ .|+++|.-..-.++ .| -+....||.|||+++.+|+..... .+..+.+++|+--||.+=+..+..
T Consensus 76 g~-r~ydvQlig~l~Ll-~G--~VaEM~TGEGKTLvA~l~a~l~AL----------~G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 76 GL-RPFDVQLLGALRLL-AG--DVIEMATGEGKTLAGAIAAAGYAL----------QGRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred CC-CcchHHHHHHHHHh-CC--CcccccCCCCHHHHHHHHHHHHHH----------cCCCeEEEcCCHHHHHHHHHHHHH
Confidence 54 68899998887765 34 367999999999999998876554 478899999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccc-hhhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 518 RLSPLNMIVRELTGDMQLS-RNELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~-~~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
.+..+|++|+.++++++.. ++..-.++|..+|..-+ |.+..+-. .-...+.+.+.||||||.++
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 9999999999999987754 33455799999999874 55443321 11122347799999999976
No 121
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.52 E-value=9.7e-07 Score=102.39 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=54.0
Q ss_pred HHhcCCCCCcHHHHHHHHH---HHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 434 AAFHGYKSLNRIQSRIFQT---VYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 434 ~~f~g~~~l~~iQ~~~i~~---~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
..+.|| ..++-|.+.... ++.. +..++|-||||+|||++|++|++..... .+.++||=+.|+
T Consensus 19 ~~~~~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---------~~k~vVIST~T~ 88 (697)
T PRK11747 19 EQLPGF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---------EKKKLVISTATV 88 (697)
T ss_pred HhCCCC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---------cCCeEEEEcCCH
Confidence 344566 689999985544 4444 3678899999999999999998765433 467899999999
Q ss_pred hHHHHHHH
Q 007492 506 ALAAEVTR 513 (601)
Q Consensus 506 aLa~Q~~~ 513 (601)
+|-+|+..
T Consensus 89 ~LQeQL~~ 96 (697)
T PRK11747 89 ALQEQLVS 96 (697)
T ss_pred HHHHHHHh
Confidence 99999863
No 122
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=5.8e-07 Score=104.67 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=61.0
Q ss_pred CCCCCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.|..++|.|.+....++ ..+.++++.||||+|||++.+.++|..+... ....+|+|.+.|..=..|+.++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-------~~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-------PEVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-------cccccEEEEcccchHHHHHHHH
Confidence 57777999999876654 4588999999999999999999999876542 1236899999999999999998
Q ss_pred HHhh
Q 007492 515 FSSR 518 (601)
Q Consensus 515 ~~~~ 518 (601)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 8873
No 123
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.43 E-value=1.1e-06 Score=81.01 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=63.7
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.|.--++-..+|||||.-.+--++++-.. .+.|+|+|+|||.++.++.+.++. .++++ -+.-.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~----~~~~~--~t~~~-- 65 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKG----LPVRF--HTNAR-- 65 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTT----SSEEE--ESTTS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhc----CCccc--Cceee--
Confidence 35556788999999999766656554433 478999999999999998887743 33332 11111
Q ss_pred chhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 536 SRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 536 ~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
......+.-|-|.|...+ ..+.. .... ...+++|+||+|...
T Consensus 66 ~~~~~g~~~i~vMc~at~~~~~~~-p~~~---~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 66 MRTHFGSSIIDVMCHATYGHFLLN-PCRL---KNYDVIIMDECHFTD 108 (148)
T ss_dssp S----SSSSEEEEEHHHHHHHHHT-SSCT---TS-SEEEECTTT--S
T ss_pred eccccCCCcccccccHHHHHHhcC-cccc---cCccEEEEeccccCC
Confidence 112234566888999886 33443 3222 258999999999965
No 124
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.42 E-value=1.9e-06 Score=85.24 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHhcCCc-eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVYYTNEN-ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n-~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.||+-|.+|+..++ +... .+|.+|.|+|||.+..-.+ ..+.++.. ......+.++++++|+.+-++++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~~i-~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLASII-AQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHHHH-HHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHHHH-HHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47999999999998 4555 8999999999997654433 33311000 00013578999999999999999999988
No 125
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.40 E-value=1.6e-06 Score=88.68 Aligned_cols=128 Identities=19% Similarity=0.137 Sum_probs=93.6
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+++|.-+.-.+. .| -|+...||=|||+++.+++.-... .+..|-+|+....||..=+..+...+.
T Consensus 77 ~p~~vQll~~l~L~-~G--~laEm~TGEGKTli~~l~a~~~AL----------~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 77 RPYDVQLLGALALH-KG--RLAEMKTGEGKTLIAALPAALNAL----------QGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp ---HHHHHHHHHHH-TT--SEEEESTTSHHHHHHHHHHHHHHT----------TSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcc-cc--eeEEecCCCCcHHHHHHHHHHHHH----------hcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 68899998886553 33 389999999999998777654433 367899999999999999999999999
Q ss_pred CCCcEEEEEeCCCccch-hhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 521 PLNMIVRELTGDMQLSR-NELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~-~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
.+|++|+..+++++... +..-.++|+.+|...+ |.+..... .....+...++||||||.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999887542 3344689999999985 66654331 11123468899999999975
No 126
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.27 E-value=3.6e-06 Score=99.72 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=84.5
Q ss_pred CCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 441 SLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
.|.|+|..+...++.. ...+|+.-..|-|||.-+.+.+-..+.. ....++|||||. .|+.|+..++.+++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 6999999988776532 4589999999999999987755443332 234589999997 89999999997765
Q ss_pred CCCCcEEEEEeCCCccc-----hhhcCCccEEEEChhhHHH---HHccCCCCCccCCccEEEeccCcccC
Q 007492 520 SPLNMIVRELTGDMQLS-----RNELEETQMIVTTPEKWDV---ITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 520 ~~~~i~V~~l~Gd~~~~-----~~~~~~~~IiVtTPekld~---l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
. +.+..+.++.... .......+++|||.+.+.. ....... ...++|||||||++.
T Consensus 223 ~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk 285 (956)
T PRK04914 223 N---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLV 285 (956)
T ss_pred C---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhc
Confidence 3 4444444332111 1222357899999886521 1111111 146899999999996
No 127
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.25 E-value=9e-06 Score=96.80 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=87.3
Q ss_pred CCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|.++|...+.-++ ..+.+.|++-..|.|||+.++..+ ..+... ......+|||||. +|..++.+.|.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~------~~~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEY------RGITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHh------cCCCCCEEEEeCh-HHHHHHHHHHHH
Confidence 78899999886554 357889999999999999865433 333221 0123468999996 777889999988
Q ss_pred hcCCCCcEEEEEeCCCccchh------hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 518 RLSPLNMIVRELTGDMQLSRN------ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~------~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
... .+.+..++|+...... .....+|+|||++.+..-....... ...+|||||||+|-.
T Consensus 241 w~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~----~W~~VIvDEAHrIKN 305 (1033)
T PLN03142 241 FCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRF----SWRYIIIDEAHRIKN 305 (1033)
T ss_pred HCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccC----CCCEEEEcCccccCC
Confidence 764 3567788886542211 1135789999999862211111111 257999999999975
No 128
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.15 E-value=8.9e-06 Score=89.80 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=67.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+..||.-|+.|..+++ +..-.||++|.|+|||.+-.-.+.+.+.+ ..+.||++||+.--++|++.++.
T Consensus 406 ~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~~~---------~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQ---------HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred CCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHHHh---------cCCceEEEcccchhHHHHHHHHH
Confidence 577899999999999999 56667999999999999977766666554 57899999999999999999887
Q ss_pred hhcCCCCcEEEEEeC
Q 007492 517 SRLSPLNMIVRELTG 531 (601)
Q Consensus 517 ~~l~~~~i~V~~l~G 531 (601)
+ .|++|..+..
T Consensus 476 ~----tgLKVvRl~a 486 (935)
T KOG1802|consen 476 K----TGLKVVRLCA 486 (935)
T ss_pred h----cCceEeeeeh
Confidence 6 5677776655
No 129
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.13 E-value=9.6e-06 Score=93.63 Aligned_cols=130 Identities=17% Similarity=0.083 Sum_probs=97.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|. .++++|.-.--++ + .--+..+.||-|||+++.+|+.-.-. .+..|.+|++..-||..=...+..
T Consensus 83 G~-r~ydVQliGgl~L-h--~G~IAEM~TGEGKTL~atlpaylnAL----------~GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 83 GM-RHFDVQLIGGMVL-H--EGQIAEMKTGEGKTLVATLPSYLNAL----------TGKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred CC-CcchhHHHhhhhh-c--CCceeeecCCCChhHHHHHHHHHHhh----------cCCCeEEEeCCHHHHHhHHHHHHH
Confidence 44 5777877654443 2 44578999999999999988764332 467799999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccch-hhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 518 RLSPLNMIVRELTGDMQLSR-NELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~-~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
.+..+|++|++..+++.... +..-.++|+.||+..| |.+...-. .....+.+.+.||||||.++
T Consensus 149 vy~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 149 VHRFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 88889999999988776543 3456899999999984 55443221 11133457899999999975
No 130
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.13 E-value=6.4e-06 Score=94.53 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=74.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh----
Q 007492 464 APTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---- 539 (601)
Q Consensus 464 ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---- 539 (601)
+.+|||||.+|+-.+-..+.. +..+|+++|..+|+.|+...|..++. +..|..++++.+...+.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~----------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA----------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc----------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH
Confidence 335999999999888776653 67899999999999999999999885 24588899987765332
Q ss_pred ---cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCccc
Q 007492 540 ---LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 540 ---~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
..++.|+|+| ++.-+..+.++++|||||-|--
T Consensus 235 ~~~~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 235 AVLRGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDD 269 (665)
T ss_pred HHhCCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCch
Confidence 2458999999 3333334446999999999963
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=98.13 E-value=1.4e-05 Score=90.58 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=88.5
Q ss_pred CCCCCcHHHHHHHHHHHhc---CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYT---NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~---~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.-+.|+|+|+.|+.+++.. +..-=+.+..|+|||++++- |...+. .+++||++|+.+|..|..+.
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala-----------~~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA-----------AARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh-----------hhheEeecchHHHHHHHHHH
Confidence 4468999999999998732 33444555669999999765 333332 37999999999999999999
Q ss_pred HHhhcCCCCcEEEEEeCCCccchhh----------------------------cCCccEEEEChhhHHHHHccC-CCCCc
Q 007492 515 FSSRLSPLNMIVRELTGDMQLSRNE----------------------------LEETQMIVTTPEKWDVITRKS-SDMSL 565 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~Gd~~~~~~~----------------------------~~~~~IiVtTPekld~l~r~~-~~~~~ 565 (601)
|..-- .+.++...+++|..+++.. ..+--|+.+|++.+-.+.... ..+.
T Consensus 226 w~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~- 303 (1518)
T COG4889 226 WTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLD- 303 (1518)
T ss_pred Hhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCC-
Confidence 97642 3456666666665443220 124568999999875444221 1222
Q ss_pred cCCccEEEeccCcccC
Q 007492 566 SMLVKLLIIDEVHLLN 581 (601)
Q Consensus 566 ~~~v~llIiDEaH~l~ 581 (601)
.+++||.||||+--
T Consensus 304 --~fDliicDEAHRTt 317 (1518)
T COG4889 304 --EFDLIICDEAHRTT 317 (1518)
T ss_pred --CccEEEecchhccc
Confidence 48899999999854
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.11 E-value=4.6e-06 Score=96.26 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=98.3
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHH-HHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL-HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il-~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
|+ .|+++|.-.--. + ...-++.+.||.|||+++.+|+. +.+ .+..|.+|+++..||.+-+..+.
T Consensus 74 G~-r~ydvQlig~l~-L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-----------~G~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 74 GL-RHFDVQLIGGLV-L--NDGKIAEMKTGEGKTLVATLPAYLNAL-----------TGKGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred CC-CCCchHhhhhHh-h--cCCccccccCCCCchHHHHHHHHHHHh-----------cCCceEEEeCCHHHHHHHHHHHH
Confidence 55 478888776533 3 35678999999999999999884 333 36789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccch-hhcCCccEEEEChhh--HHHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 517 SRLSPLNMIVRELTGDMQLSR-NELEETQMIVTTPEK--WDVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~-~~~~~~~IiVtTPek--ld~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
..++.+|++|++..++++... +..-.++|..+|..- ||.+...-. .-...+.+.+.||||||.++
T Consensus 139 pvy~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 139 QIYRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999999999988877653 344579999999986 355554321 11123457899999999975
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.07 E-value=3.7e-06 Score=90.09 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=98.4
Q ss_pred CCCCCcHHHHHHHHHHHhcC--CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTN--ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~--~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.-..++|+|.+++..++.+| +.-+|+.|-|+|||+|.+-++.. -..++|++|..-.-+.|+...|
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-------------ikK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-------------IKKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-------------ecccEEEEecCccCHHHHHHHH
Confidence 34589999999999999655 47899999999999997654432 2347999999999999999888
Q ss_pred HhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCC----CCcc--CCccEEEeccCcccCC-CChHHH
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSD----MSLS--MLVKLLIIDEVHLLND-DRGPVI 588 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~----~~~~--~~v~llIiDEaH~l~d-~rg~~l 588 (601)
.....-..-.++.+|++..-.. -.++.|+|+|+-++..-.+++.+ +.+. +.-.++|+||+|.+-. +|..|+
T Consensus 366 k~wsti~d~~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 366 KQWSTIQDDQICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred HhhcccCccceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHH
Confidence 7655444556788888765322 24688999999875332222211 1111 1246999999999876 566666
Q ss_pred HHH
Q 007492 589 EAL 591 (601)
Q Consensus 589 e~i 591 (601)
..+
T Consensus 444 siv 446 (776)
T KOG1123|consen 444 SIV 446 (776)
T ss_pred HHH
Confidence 433
No 134
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.03 E-value=2e-05 Score=91.76 Aligned_cols=112 Identities=22% Similarity=0.164 Sum_probs=75.3
Q ss_pred HHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC-CCcEEEE-E
Q 007492 452 TVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRE-L 529 (601)
Q Consensus 452 ~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~-~~i~V~~-l 529 (601)
.++..+.-++|+||||||||.-.-.-++.... ..+.+|.+.-|.|--|.-+..++...+.. .|-.|+. +
T Consensus 60 ~ai~~~~vvii~getGsGKTTqlP~~lle~g~---------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 34557888999999999999886555555332 24568888889997777777777776543 3433422 1
Q ss_pred eCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcc
Q 007492 530 TGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 530 ~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
..+... ..++.|-+.|.+.|-........++ .+++|||||+|.
T Consensus 131 Rfe~~~----s~~Trik~mTdGiLlrei~~D~~Ls---~ys~vIiDEaHE 173 (845)
T COG1643 131 RFESKV----SPRTRIKVMTDGILLREIQNDPLLS---GYSVVIIDEAHE 173 (845)
T ss_pred EeeccC----CCCceeEEeccHHHHHHHhhCcccc---cCCEEEEcchhh
Confidence 222222 3458999999999743333333333 699999999997
No 135
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.96 E-value=7.8e-05 Score=87.60 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=76.7
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH---------hhcCCCCcEEEE
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS---------SRLSPLNMIVRE 528 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~---------~~l~~~~i~V~~ 528 (601)
.|+.+.++||+|||.+|+-+|+...... +-.+.|++||+.|.-.-+...+. .......+....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~--------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~ 131 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY--------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYV 131 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc--------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEE
Confidence 5899999999999999999988765542 45789999999998776654433 222222345555
Q ss_pred EeCCC-------ccchh----------hcCCccEEEEChhhHHH--HHccC-------CC---CCccCCc-cEEEeccCc
Q 007492 529 LTGDM-------QLSRN----------ELEETQMIVTTPEKWDV--ITRKS-------SD---MSLSMLV-KLLIIDEVH 578 (601)
Q Consensus 529 l~Gd~-------~~~~~----------~~~~~~IiVtTPekld~--l~r~~-------~~---~~~~~~v-~llIiDEaH 578 (601)
+.+.. ..... .-...+|+|.|-+.|.. +.+.. +. +...+.. =.|||||.|
T Consensus 132 ~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh 211 (986)
T PRK15483 132 INAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPH 211 (986)
T ss_pred EecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCC
Confidence 55432 10100 11247999999998732 21111 00 1111111 289999999
Q ss_pred ccCCCChHHHHHH
Q 007492 579 LLNDDRGPVIEAL 591 (601)
Q Consensus 579 ~l~d~rg~~le~i 591 (601)
++..+ +..++.|
T Consensus 212 ~~~~~-~k~~~~i 223 (986)
T PRK15483 212 RFPRD-NKFYQAI 223 (986)
T ss_pred CCCcc-hHHHHHH
Confidence 99642 3455555
No 136
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.90 E-value=9.7e-05 Score=72.47 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHhcCCc-eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNEN-ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n-~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
+|++-|.+++..++.++.+ .+|++|.|+|||.+. -.+...+.. .+.++++++||...+.++...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA---------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH---------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh---------CCCeEEEECCcHHHHHHHHHh
Confidence 4789999999999865544 677899999999863 334444433 468999999999999986666
No 137
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.90 E-value=2.4e-05 Score=86.12 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=57.0
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
+.+++-|.+|+..+.+...-.+|.+|+|+|||.+....|.+.+.+ +.+||+.+||..-++-++.++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ----------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc----------CCeEEEEcCchHHHHHHHHHhc
Confidence 478999999999998655677889999999999988877776654 6799999999999999988644
No 138
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.73 E-value=0.00015 Score=72.28 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=93.2
Q ss_pred hhHHHHHHHhcCCCCCcHHHHHHHHHHHh--cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 427 ELDEFAQAAFHGYKSLNRIQSRIFQTVYY--TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 427 ~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~--~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
+-|+|.---+.+---+++.|.++...+.. ++.|.+.+.-.|.|||.| ++|++..+.. ++.+.+.++=-
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA---------dg~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA---------DGSRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc---------CCCcEEEEEcC
Confidence 45777755454444789999999988874 368999999999999999 5666665543 23344444444
Q ss_pred hhHHHHHHHHHHhhcCCC-CcEEEE--EeCCCccchhh-----------cCCccEEEEChhhHHHHH--------ccCCC
Q 007492 505 KALAAEVTRTFSSRLSPL-NMIVRE--LTGDMQLSRNE-----------LEETQMIVTTPEKWDVIT--------RKSSD 562 (601)
Q Consensus 505 raLa~Q~~~~~~~~l~~~-~i~V~~--l~Gd~~~~~~~-----------~~~~~IiVtTPekld~l~--------r~~~~ 562 (601)
++|..|+...+..++.+. +-.|.. +.-+...+... ...-.|+|+|||.+-.+. .+...
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 689999999999888653 444443 33444443221 135669999999741111 11110
Q ss_pred --------CCccCCccEEEeccCcccCC
Q 007492 563 --------MSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 563 --------~~~~~~v~llIiDEaH~l~d 582 (601)
..+.+....-|+||+|.++.
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 01222334569999999775
No 139
>PF13245 AAA_19: Part of AAA domain
Probab=97.71 E-value=0.00015 Score=60.08 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=43.1
Q ss_pred HHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 449 IFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 449 ~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
++..++..+.-++|.||.|||||.+.+-.+...+..+ ...+.+++|++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~------~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR------ADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh------cCCCCeEEEECCCHHHHHHHHHHH
Confidence 4454554234455699999999988766666555321 012678999999999999988887
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00013 Score=84.45 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=59.1
Q ss_pred HhcCCCCCcHHHHHHHHH---HHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 435 AFHGYKSLNRIQSRIFQT---VYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 435 ~f~g~~~l~~iQ~~~i~~---~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.|.|+ .+++.|.+.... ++.++..+++.||||+|||++|++|++..... .+.+++|.++|++|-.|+
T Consensus 10 ~~~~~-~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~---------~~~~viist~t~~lq~q~ 79 (654)
T COG1199 10 AFPGF-EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE---------EGKKVIISTRTKALQEQL 79 (654)
T ss_pred hCCCC-CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH---------cCCcEEEECCCHHHHHHH
Confidence 34444 799999988755 44456679999999999999999999987654 357999999999999999
Q ss_pred HHHHHh
Q 007492 512 TRTFSS 517 (601)
Q Consensus 512 ~~~~~~ 517 (601)
+.+...
T Consensus 80 ~~~~~~ 85 (654)
T COG1199 80 LEEDLP 85 (654)
T ss_pred HHhhcc
Confidence 876554
No 141
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.64 E-value=0.00022 Score=80.42 Aligned_cols=126 Identities=21% Similarity=0.180 Sum_probs=83.5
Q ss_pred CCcHHHHHHH---HHHHhcCCceeEeccCCCchHHHH--HHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 441 SLNRIQSRIF---QTVYYTNENILVCAPTGAGKTNIA--MISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 441 ~l~~iQ~~~i---~~~l~~~~n~lv~ApTGsGKT~va--~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.|.++|.+-+ -..++.|-|.++.-.-|-|||+-. ++.-+.... ...+--+|+||.-.|.+ +.++|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~---------~~~GPfLVi~P~StL~N-W~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK---------GIPGPFLVIAPKSTLDN-WMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc---------CCCCCeEEEeeHhhHHH-HHHHH
Confidence 6788887754 344567889999999999999863 333333221 12345688999877754 66778
Q ss_pred HhhcCCCCcEEEEEeCCCccchhh------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNE------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.++.. ++.|..++|+..-.... -...+|+|||+|.. +..++.-..+ .-+++||||+|+|-.
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~--i~dk~~lk~~--~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIA--IKDKSFLKKF--NWRYLVIDEAHRIKN 303 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHH--HhhHHHHhcC--CceEEEechhhhhcc
Confidence 77664 56799999986432111 13789999999984 1111111111 247999999999975
No 142
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.63 E-value=2.6e-05 Score=76.77 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
+-.|.-|..++.+++ ....+++.+|.|+|||+.++...++.+.. ..--+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKE--------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHT--------TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHh--------CCCcEEEEEecCCCC
Confidence 346889999999988 67888999999999999999999998765 234588888888764
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.57 E-value=0.00022 Score=82.48 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=95.3
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHH-HHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL-HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il-~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
|. .|+++|.-.--. ++.| -+....||=|||+++.+|+. +.+ .|..|-+|+..--||..=...+.
T Consensus 76 G~-r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL-----------~GkgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 76 GK-RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNAL-----------TGKGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred CC-CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHh-----------cCCceEEEecchhhhhhhHHHHH
Confidence 54 678888876644 4444 46899999999999999874 433 36678888899999998788888
Q ss_pred hhcCCCCcEEEEEeCCCccc-hhhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 517 SRLSPLNMIVRELTGDMQLS-RNELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~-~~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
..+..+|++|++...++... ++..-.|+|..+|..-| |.+...-. .-...+.+.+.||||||.++
T Consensus 141 ~vy~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 141 KVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 88888899999988876654 34445799999999884 66654321 11122357799999999975
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.55 E-value=0.00011 Score=80.05 Aligned_cols=103 Identities=27% Similarity=0.352 Sum_probs=76.1
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh-
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN- 538 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~- 538 (601)
++=++||.||||.-| |+++.+ ..+.+|--|.|-||.+++.+++. .|+.+-.+||.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~----------aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS----------AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh----------hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCC
Confidence 455899999999764 556554 45789999999999999999886 47888888997654322
Q ss_pred hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 539 ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 539 ~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
.-..++.+-||-|+.. ....+.+.||||+++|.| .||-.+..
T Consensus 256 ~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTr 298 (700)
T KOG0953|consen 256 NGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTR 298 (700)
T ss_pred CCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHH
Confidence 1234788888887642 222478899999999998 78866543
No 145
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.55 E-value=0.00023 Score=85.33 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=73.8
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~ 536 (601)
+...+|.=-||||||++.... .+.+... ...+++++|+-.+.|-.|+...|.++........ . ..+..--
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~-A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~-~~s~~~L 342 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKL-ARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-K-AESTSEL 342 (962)
T ss_pred CCceEEEeecCCchHHHHHHH-HHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-c-ccCHHHH
Confidence 457899999999999995443 3333331 3578999999999999999999998765332211 1 1111111
Q ss_pred hhhcC--CccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 537 RNELE--ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 537 ~~~~~--~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
++.+. ...|||||-++|.....+.......+.=-+||+||||+-..
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~ 390 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY 390 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc
Confidence 22222 35899999999955554331111111223889999999764
No 146
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.52 E-value=0.00017 Score=80.58 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHh----cCCceeEeccCCCchHHHHHHHHHHH-HhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYY----TNENILVCAPTGAGKTNIAMISILHE-IGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~----~~~n~lv~ApTGsGKT~va~l~il~~-l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.+-|+|..++.-+.- .+.-.++.---|-|||++.+-.|++. ...+..++...... +.|||||. .|..|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 566788887754431 13445677778999999765555543 33333444333333 69999997 6888999999
Q ss_pred HhhcCCCCcEEEEEeCCC--ccchhhcCCccEEEEChhhHHH-----HHccCCCCCccCCc--cEEEeccCcccCCC
Q 007492 516 SSRLSPLNMIVRELTGDM--QLSRNELEETQMIVTTPEKWDV-----ITRKSSDMSLSMLV--KLLIIDEVHLLNDD 583 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~--~~~~~~~~~~~IiVtTPekld~-----l~r~~~~~~~~~~v--~llIiDEaH~l~d~ 583 (601)
.+++...-++|+.++|.. .+....+...+|+|||+.-... ...+ .+.+....| ..||+||||.+-+.
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~-~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEG-KNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcc-cCccHHHHhhHHHhhhhhhhhhccc
Confidence 999998889999999986 3445667889999999875422 1111 111211123 36999999999763
No 147
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.00018 Score=73.02 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=45.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.++.-.|..|...+..+. ++..+++.+|+|+|||+.+....++.+... .-.++++.-|+...
T Consensus 55 ~~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--------~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHK--------DVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcC--------CeeEEEEeCCCCCc
Confidence 355667889999888765 577899999999999999988888765431 22345555576653
No 148
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.48 E-value=0.00032 Score=75.10 Aligned_cols=94 Identities=17% Similarity=0.300 Sum_probs=59.4
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN 538 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~ 538 (601)
-++|.+..|||||++++-.+.. +.. ...+.+++|+++..+|...+...+.+....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~-------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQN-------SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhc-------cccCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 4789999999999997764433 311 125678999999999999888888664300
Q ss_pred hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 539 ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 539 ~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
......+..|..+ ..+. .........++|||||||+|.+
T Consensus 58 --~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --chhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhh
Confidence 0012223333332 1111 0011112578999999999997
No 149
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.46 E-value=0.00029 Score=73.06 Aligned_cols=70 Identities=26% Similarity=0.237 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
||+-|.+++.. ...+++|.|+.|||||.+.+.-+++.+.... .+..++++|++|++.|.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 57889998876 4789999999999999998877777665521 2456799999999999999999988654
No 150
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.37 E-value=0.00074 Score=77.76 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+.|..|+..++.....++|.+|+|+|||.+..-.+.+.+. .+.+|++++||..-|.++...+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~----------~g~~VLv~a~sn~Avd~l~e~l~~~- 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK----------RGLRVLVTAPSNIAVDNLLERLALC- 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH----------cCCCEEEEcCcHHHHHHHHHHHHhC-
Confidence 46899999999999855578999999999999886554544432 2559999999999999999888763
Q ss_pred CCCCcEEEEEeCC
Q 007492 520 SPLNMIVRELTGD 532 (601)
Q Consensus 520 ~~~~i~V~~l~Gd 532 (601)
++++..+.+.
T Consensus 225 ---~~~vvRlg~~ 234 (637)
T TIGR00376 225 ---DQKIVRLGHP 234 (637)
T ss_pred ---CCcEEEeCCc
Confidence 4555555443
No 151
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.35 E-value=0.001 Score=76.24 Aligned_cols=138 Identities=23% Similarity=0.234 Sum_probs=91.8
Q ss_pred CCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhhc-----------c-------c----CC----C
Q 007492 441 SLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQHF-----------R-------D----GY----L 491 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~-----------~-------~----~~----~ 491 (601)
.|++.|..-...++ ....|.++..|||+|||++.+-..|....... . . |. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 56788877665544 34678999999999999998776665543221 1 0 00 0
Q ss_pred C------CCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc--c---------------------------
Q 007492 492 H------KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL--S--------------------------- 536 (601)
Q Consensus 492 ~------~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~--~--------------------------- 536 (601)
. ..-+++.|-.-|..=..|+++++++..-. ++...|.+..++ .
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 12578889989999999999999875432 222222221100 0
Q ss_pred --------------------------------------hhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccC
Q 007492 537 --------------------------------------RNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEV 577 (601)
Q Consensus 537 --------------------------------------~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEa 577 (601)
+...+.++||.|-+..+ |-..|++.++.+.. ..||+|||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn--sIVIfDEA 256 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN--SIVIFDEA 256 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc--cEEEEecc
Confidence 00012689999999885 88888887777655 68999999
Q ss_pred cccCC
Q 007492 578 HLLND 582 (601)
Q Consensus 578 H~l~d 582 (601)
|.|-+
T Consensus 257 HNiEd 261 (945)
T KOG1132|consen 257 HNIED 261 (945)
T ss_pred ccHHH
Confidence 99876
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.22 E-value=0.0021 Score=72.99 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=85.8
Q ss_pred CCCCcHHHHHHHHHHH---hcCCceeEeccCCCchHHH--HHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 439 YKSLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNI--AMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~v--a~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
|..|.++|...+.-++ ..+.--++----|-|||.- +.|+.|++-. .-...+|||||. .+..|+..
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---------k~~~paLIVCP~-Tii~qW~~ 272 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---------KLTKPALIVCPA-TIIHQWMK 272 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---------cccCceEEEccH-HHHHHHHH
Confidence 3478899998876543 3355567777789999965 3333333221 122579999997 67889999
Q ss_pred HHHhhcCCCCcEEEEEeCCCcc----------------chhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccC
Q 007492 514 TFSSRLSPLNMIVRELTGDMQL----------------SRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577 (601)
Q Consensus 514 ~~~~~l~~~~i~V~~l~Gd~~~----------------~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEa 577 (601)
+|+..+.++ +|..++|..+. .+......+|+|||++.+......-... .=.++|+||.
T Consensus 273 E~~~w~p~~--rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~----~W~y~ILDEG 346 (923)
T KOG0387|consen 273 EFQTWWPPF--RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGI----LWDYVILDEG 346 (923)
T ss_pred HHHHhCcce--EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccc----cccEEEecCc
Confidence 999887654 57777775441 1222346789999999874433222111 2469999999
Q ss_pred cccCCC
Q 007492 578 HLLNDD 583 (601)
Q Consensus 578 H~l~d~ 583 (601)
|+|-..
T Consensus 347 H~IrNp 352 (923)
T KOG0387|consen 347 HRIRNP 352 (923)
T ss_pred ccccCC
Confidence 999764
No 153
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.19 E-value=0.0036 Score=73.43 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh-hcCCC
Q 007492 444 RIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS-RLSPL 522 (601)
Q Consensus 444 ~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~-~l~~~ 522 (601)
..+...+.+ ++.+..++|++.||+|||.-.--.+|...... | ...++|+--|.|--|--++++... +....
T Consensus 176 ~~r~~Il~~-i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~---~----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 176 KMRDTILDA-IEENQVVVISGETGCGKTTQVPQFILDEAIES---G----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred HHHHHHHHH-HHhCceEEEeCCCCCCchhhhhHHHHHHHHhc---C----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 444555555 45789999999999999988666666654332 1 466788888999888888777655 33344
Q ss_pred CcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 523 NMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 523 ~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
|-.|+--.+- ......++.++.||.+.+ ..+.. . .....+..||+||+|.=.
T Consensus 248 g~~VGYqvrl---~~~~s~~t~L~fcTtGvLLr~L~~-~---~~l~~vthiivDEVHER~ 300 (924)
T KOG0920|consen 248 GEEVGYQVRL---ESKRSRETRLLFCTTGVLLRRLQS-D---PTLSGVTHIIVDEVHERS 300 (924)
T ss_pred CCeeeEEEee---ecccCCceeEEEecHHHHHHHhcc-C---cccccCceeeeeeEEEcc
Confidence 5444322221 122223489999999985 44433 2 233369999999999844
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.18 E-value=0.0022 Score=73.93 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~ 536 (601)
..-.+|.||.|||||.+..-++-..+. .+..++++|+..++|+.++..+|+...-. |..-..-.++..+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~---------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~ 118 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK---------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID 118 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc---------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc
Confidence 344578999999999886554433322 25789999999999999999998764211 22222111222222
Q ss_pred hhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 537 RNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 537 ~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
. ...+-+++..+.+..+.. .+....++|||||+-...
T Consensus 119 ~---~~~~rLivqIdSL~R~~~-----~~l~~yDvVIIDEv~svL 155 (824)
T PF02399_consen 119 G---RPYDRLIVQIDSLHRLDG-----SLLDRYDVVIIDEVMSVL 155 (824)
T ss_pred c---cccCeEEEEehhhhhccc-----ccccccCEEEEehHHHHH
Confidence 1 124556666555533332 123357899999997654
No 155
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.16 E-value=0.0038 Score=71.41 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=58.3
Q ss_pred hhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHH--HHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 427 ELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAM--ISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 427 ~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~--l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
.+..+....|..-.....+|..|+-.++ .+.-++|.+++|+|||.+.. +..+..+.. ....++++.+||
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~--------~~~~~i~l~APT 208 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLAD--------GERCRIRLAAPT 208 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC--------CCCcEEEEECCc
Confidence 3444444455221134589999999887 57788999999999998742 333322211 124678899999
Q ss_pred hhHHHHHHHHHHhhcCCC
Q 007492 505 KALAAEVTRTFSSRLSPL 522 (601)
Q Consensus 505 raLa~Q~~~~~~~~l~~~ 522 (601)
.--|..+.+.....+..+
T Consensus 209 gkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 209 GKAAARLTESLGKALRQL 226 (615)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 999999888776655433
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.16 E-value=0.0032 Score=68.10 Aligned_cols=111 Identities=26% Similarity=0.302 Sum_probs=78.7
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc-chh
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL-SRN 538 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~-~~~ 538 (601)
.++.-.-|.|||.-++.-++..+ .+...++|||+.||. |+.+++.+... -..+|..++|.... +-+
T Consensus 207 GiLADEMGMGKTIQtIaLllae~-----------~ra~tLVvaP~VAlm-QW~nEI~~~T~-gslkv~~YhG~~R~~nik 273 (791)
T KOG1002|consen 207 GILADEMGMGKTIQTIALLLAEV-----------DRAPTLVVAPTVALM-QWKNEIERHTS-GSLKVYIYHGAKRDKNIK 273 (791)
T ss_pred ceehhhhccchHHHHHHHHHhcc-----------ccCCeeEEccHHHHH-HHHHHHHHhcc-CceEEEEEecccccCCHH
Confidence 35566789999998776666643 345699999999985 55666655544 35789999996553 345
Q ss_pred hcCCccEEEEChhhHHHHHccC--C---------CCCccCCcc--EEEeccCcccCCC
Q 007492 539 ELEETQMIVTTPEKWDVITRKS--S---------DMSLSMLVK--LLIIDEVHLLNDD 583 (601)
Q Consensus 539 ~~~~~~IiVtTPekld~l~r~~--~---------~~~~~~~v~--llIiDEaH~l~d~ 583 (601)
++.+.+++.||+..+....|+. + ..++...++ -||+||||.+-+-
T Consensus 274 el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 274 ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 6789999999999986666542 1 123333344 5899999999873
No 157
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0016 Score=70.88 Aligned_cols=149 Identities=21% Similarity=0.326 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccC-CCch--HHHHHHHHHHHHhhhcc-----------c--CCC-----C---CCC
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPT-GAGK--TNIAMISILHEIGQHFR-----------D--GYL-----H---KDE 495 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApT-GsGK--T~va~l~il~~l~~~~~-----------~--~~~-----~---~~~ 495 (601)
..+++.|.+.+..++ +-++++..--| |.|+ +-+|++-+|+++.+... + |.- . -..
T Consensus 215 ~pltalQ~~L~~~m~-~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF-NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHHH-hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 368999999998876 56777543222 3455 67889989998865421 0 100 0 125
Q ss_pred cEEEEEccChhHHHHHHHHHHhhcCCCCc---EE-------EEEeCCCccc-----------------------------
Q 007492 496 FKIVYVAPMKALAAEVTRTFSSRLSPLNM---IV-------RELTGDMQLS----------------------------- 536 (601)
Q Consensus 496 ~kvl~laPtraLa~Q~~~~~~~~l~~~~i---~V-------~~l~Gd~~~~----------------------------- 536 (601)
++||+|||+|+-|..+++.+..+|.+..- .| .++.|++...
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999999998754421 11 2233321110
Q ss_pred hh------hcCCccEEEEChhhHHHHHc----cCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 537 RN------ELEETQMIVTTPEKWDVITR----KSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 537 ~~------~~~~~~IiVtTPekld~l~r----~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
+. ....++||||.|=-|..+.. +..++.|...+.++|||-+|.|+- ..||.|+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~---QNwEhl~ 436 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM---QNWEHLL 436 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH---hhHHHHH
Confidence 00 01278999999998866654 334567888899999999999984 4454443
No 158
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.07 E-value=0.0064 Score=69.36 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCceeEeccCCCchHHHHH--HHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC
Q 007492 444 RIQSRIFQTVYYTNENILVCAPTGAGKTNIAM--ISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521 (601)
Q Consensus 444 ~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~--l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~ 521 (601)
.+|..++..++ .+.-++|+++.|+|||.+.. +..+..... .....++++.+||---|..+.+........
T Consensus 148 ~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~-------~~~~~~I~l~APTGkAA~rL~e~~~~~~~~ 219 (586)
T TIGR01447 148 NWQKVAVALAL-KSNFSLITGGPGTGKTTTVARLLLALVKQSP-------KQGKLRIALAAPTGKAAARLAESLRKAVKN 219 (586)
T ss_pred HHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc-------ccCCCcEEEECCcHHHHHHHHHHHHhhhcc
Confidence 79999999998 57888999999999998743 333322211 011358999999999888887776654432
Q ss_pred CCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCC-----CCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 522 LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSS-----DMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 522 ~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~-----~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
++.. ........+-..|-.+|--+..... ..... .+++|||||+-++. -+.+..++..+
T Consensus 220 l~~~-----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l-~~dvlIiDEaSMvd---~~l~~~ll~al 283 (586)
T TIGR01447 220 LAAA-----------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPL-PLDVLVVDEASMVD---LPLMAKLLKAL 283 (586)
T ss_pred cccc-----------hhhhhccccccchhhhhhcccCCcchhhhcccCCC-cccEEEEcccccCC---HHHHHHHHHhc
Confidence 2211 0000011122344444311111000 00111 37899999999887 35555555544
No 159
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.05 E-value=0.0035 Score=70.30 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=67.7
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGD 532 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~-~~~i~V~~l~Gd 532 (601)
++++.-++|.+.||||||.- |=+.+... |. . ...+|.+.-|.|--|.-++.+...-.. .+|-.|+-...-
T Consensus 63 ve~nqvlIviGeTGsGKSTQ----ipQyL~ea---G~-~-~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF 133 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKSTQ----IPQYLAEA---GF-A-SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF 133 (674)
T ss_pred HHHCCEEEEEcCCCCCcccc----HhHHHHhc---cc-c-cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe
Confidence 45788999999999999975 12222221 21 1 233488888999877777766655332 345444433221
Q ss_pred CccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcc
Q 007492 533 MQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 533 ~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
...+ ...+.|...|-+.| ..+.. ... + ....+|||||||.
T Consensus 134 ed~t---s~~TrikymTDG~LLRE~l~-Dp~--L-skYsvIIlDEAHE 174 (674)
T KOG0922|consen 134 EDST---SKDTRIKYMTDGMLLREILK-DPL--L-SKYSVIILDEAHE 174 (674)
T ss_pred cccC---CCceeEEEecchHHHHHHhc-CCc--c-ccccEEEEechhh
Confidence 1111 13589999999985 33332 122 2 2589999999997
No 160
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.02 E-value=0.0063 Score=70.30 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=92.5
Q ss_pred CCCcHHHHHHHHHHHhc--C------Cc-eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 440 KSLNRIQSRIFQTVYYT--N------EN-ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~--~------~n-~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
..+.|+|.+.|.-++.. | .+ .++.=..|+|||+-.+.-+.-.+.++...++ --.+.|||+|. .|+.-
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~---~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP---LINKPLVVAPS-SLVNN 312 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc---cccccEEEccH-HHHHH
Confidence 37899999999877632 1 12 2333446999999855544444444211111 12689999996 89999
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcc-c---hh------hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCccc
Q 007492 511 VTRTFSSRLSPLNMIVRELTGDMQL-S---RN------ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 511 ~~~~~~~~l~~~~i~V~~l~Gd~~~-~---~~------~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
+.++|.+.+....+.+..++|...- . +. ..-..-|++.+.+.+....+... ...+++||+||.|.+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il----~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKIL----LIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHh----cCCCCeEEECCCCCc
Confidence 9999999887666778778886652 0 00 01235688888888743333321 124899999999999
Q ss_pred CCCChHHHHH
Q 007492 581 NDDRGPVIEA 590 (601)
Q Consensus 581 ~d~rg~~le~ 590 (601)
-......+.+
T Consensus 389 kN~~s~~~ka 398 (776)
T KOG0390|consen 389 KNSDSLTLKA 398 (776)
T ss_pred cchhhHHHHH
Confidence 8755554433
No 161
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.99 E-value=0.0012 Score=70.99 Aligned_cols=61 Identities=30% Similarity=0.421 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHH-----hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 441 SLNRIQSRIFQTVY-----YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l-----~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.||.-|..++..++ ..+.++.|.+|-|+|||.+.-. +.+.+. ..+..++++|||-.-|.-+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~---------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLR---------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhc---------cccceEEEecchHHHHHhc
Confidence 47889999988873 2588999999999999987433 222222 2456888999997766655
No 162
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.99 E-value=0.007 Score=65.62 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=83.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
+..|-|+|.+-+.-+++.|..+++.---|-|||.-|+. |..... ...-+|+|||-- |-..+...|.+.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyr----------aEwplliVcPAs-vrftWa~al~r~ 263 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYR----------AEWPLLIVCPAS-VRFTWAKALNRF 263 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHh----------hcCcEEEEecHH-HhHHHHHHHHHh
Confidence 34678999999999999999999999999999998765 333322 245688999974 444556666666
Q ss_pred cCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCC
Q 007492 519 LSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDR 584 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~r 584 (601)
|.... .|..+.+....-...-...-|.|..++.+..+..--... ..++||+||.|+|-+.+
T Consensus 264 lps~~-pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~~----~~~vvI~DEsH~Lk~sk 324 (689)
T KOG1000|consen 264 LPSIH-PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKKE----KYRVVIFDESHMLKDSK 324 (689)
T ss_pred ccccc-ceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHhcc----cceEEEEechhhhhccc
Confidence 64332 133333333222121123468888888864433221111 36899999999998743
No 163
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.93 E-value=0.0047 Score=73.12 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHh-------cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYY-------TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~-------~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
.-+.+|-+|+..+.. .|--++--|.||+|||++=.= |+..+.. +..+.|..|-.-.|.|--|.-.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-------~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-------DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-------CCCCceEEEEccccceeccchH
Confidence 346899999988753 244455569999999998432 2222322 2356788888888988888888
Q ss_pred HHHhhcCCCCcEEEEEeCC
Q 007492 514 TFSSRLSPLNMIVRELTGD 532 (601)
Q Consensus 514 ~~~~~l~~~~i~V~~l~Gd 532 (601)
.+++++.--.-....+.|+
T Consensus 480 a~r~rL~L~~ddLAVlIGs 498 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGG 498 (1110)
T ss_pred HHHHhcCCCccceEEEECH
Confidence 8888764333344445554
No 164
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.86 E-value=0.00089 Score=73.19 Aligned_cols=161 Identities=7% Similarity=-0.122 Sum_probs=108.7
Q ss_pred HHHHHHhcCC--CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 430 EFAQAAFHGY--KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 430 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
+.+...+.|. +....+|..++..+- .|+++.+...|.|||.+++-+.....+.. .+....+|+.||+++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~-~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~ 343 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFAS-EGRADGGNEARQAGKGTCPTSGSRKFQTL--------CHATNSLLPSEMVEH 343 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhh-hcccccccchhhcCCccCcccchhhhhhc--------CcccceecchhHHHH
Confidence 3444444444 478899999999874 79999999999999999998877665543 356678999999999
Q ss_pred HHHHHHHHHhhcCC---CC-cEEEEEeCCCccchhh--cCCccEEEEChhhH-HHHHccCCC-CCccCCccEEEeccCcc
Q 007492 508 AAEVTRTFSSRLSP---LN-MIVRELTGDMQLSRNE--LEETQMIVTTPEKW-DVITRKSSD-MSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 508 a~Q~~~~~~~~l~~---~~-i~V~~l~Gd~~~~~~~--~~~~~IiVtTPekl-d~l~r~~~~-~~~~~~v~llIiDEaH~ 579 (601)
++...+-+.-.+.. .. ..|-...|+...++.. ..+.++|.+.|... ..+..+... ..+.-...++++||+|.
T Consensus 344 ~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~ 423 (1034)
T KOG4150|consen 344 LRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCAL 423 (1034)
T ss_pred hhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceee
Confidence 98765544322211 11 1222233444333332 25789999999985 333333322 11222467999999999
Q ss_pred cCCCChHHHHHHHHHHHhhh
Q 007492 580 LNDDRGPVIEALVARTLRQV 599 (601)
Q Consensus 580 l~d~rg~~le~iv~r~~r~~ 599 (601)
+...+|......+.|+++-+
T Consensus 424 Y~~~~~~~~~~~~R~L~~L~ 443 (1034)
T KOG4150|consen 424 YLFPTKALAQDQLRALSDLI 443 (1034)
T ss_pred eecchhhHHHHHHHHHHHHH
Confidence 99989988888777777643
No 165
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.85 E-value=0.0036 Score=71.74 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=36.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
+.-|+=|.+.||+|||.||+=+|...-.+. +-++-|+|||+.|.-.
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~Y--------G~~KFIivVPs~AIke 118 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKY--------GLFKFIIVVPSLAIKE 118 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHh--------CceeEEEEeccHHHHh
Confidence 345888999999999999988876543332 4579999999999744
No 166
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.82 E-value=0.0014 Score=77.02 Aligned_cols=128 Identities=15% Similarity=0.069 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++++|-..=-+ ++.| -+.-+.||-|||+++.+|+.-.-. .|..|-+|+..--||..=...+...+.
T Consensus 138 ~~ydVQLiGgiv-Lh~G--~IAEM~TGEGKTLvatlp~yLnAL----------~G~gVHvVTvNDYLA~RDaewm~p~y~ 204 (1025)
T PRK12900 138 VPYDVQLIGGIV-LHSG--KISEMATGEGKTLVSTLPTFLNAL----------TGRGVHVVTVNDYLAQRDKEWMNPVFE 204 (1025)
T ss_pred cccchHHhhhHH-hhcC--CccccCCCCCcchHhHHHHHHHHH----------cCCCcEEEeechHhhhhhHHHHHHHHH
Confidence 456666554333 3333 468899999999999998754333 245677777788898877777777777
Q ss_pred CCCcEEEEEeCCCccc-hhhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 521 PLNMIVRELTGDMQLS-RNELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~-~~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
.+|++|+++..++... ++..-.|+|..||..-| |.+...-. .-...+...+.||||||.++
T Consensus 205 flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 205 FHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 8899999987766554 34456899999999874 55543321 11122347799999999865
No 167
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.82 E-value=0.016 Score=68.11 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
.|++-|..++..++.++.-++|.++.|+|||.+.-. +...+.. .+.++++++||---|..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~---------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA---------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh---------CCCeEEEEeCcHHHHHHHH
Confidence 699999999999885556789999999999977432 3333322 4678999999977766543
No 168
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.006 Score=69.44 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCC---CCCcEEEEEccChhHHHHHHHHHHhhcCCCCc
Q 007492 448 RIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLH---KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNM 524 (601)
Q Consensus 448 ~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~---~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i 524 (601)
++..++ +.+.-++||+.||||||.-. | +.++. .|... ..+.-|=|.-|.|--|--+..+...-+..+|-
T Consensus 263 ~IMEaI-n~n~vvIIcGeTGsGKTTQv--P--QFLYE---AGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~ 334 (1172)
T KOG0926|consen 263 RIMEAI-NENPVVIICGETGSGKTTQV--P--QFLYE---AGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGS 334 (1172)
T ss_pred HHHHHh-hcCCeEEEecCCCCCccccc--h--HHHHH---cccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcc
Confidence 344444 46778899999999999762 2 11111 12111 12334556669998888888887776665665
Q ss_pred EEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHH
Q 007492 525 IVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTL 596 (601)
Q Consensus 525 ~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~ 596 (601)
.|.....- ....-..+.|-..|-+.| ..+.. ++-+ .....|||||||.=.= .-.++=-+++|+.
T Consensus 335 eVsYqIRf---d~ti~e~T~IkFMTDGVLLrEi~~---DflL-~kYSvIIlDEAHERSv-nTDILiGmLSRiV 399 (1172)
T KOG0926|consen 335 EVSYQIRF---DGTIGEDTSIKFMTDGVLLREIEN---DFLL-TKYSVIILDEAHERSV-NTDILIGMLSRIV 399 (1172)
T ss_pred ceeEEEEe---ccccCCCceeEEecchHHHHHHHH---hHhh-hhceeEEechhhhccc-hHHHHHHHHHHHH
Confidence 55432211 111123578999999985 33332 2222 2478999999997331 1234445555554
No 169
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.71 E-value=0.0093 Score=69.80 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
..+++-|.+|+..+. .+..++|.++.|+|||.+.. .++..+... .+...+++++||-.-|..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l~-~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAI-QHKVVILTGGPGTGKTTITR-AIIELAEEL-------GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHHH-HHHHHHHHc-------CCCceEEEEeCchHHHHHHHH
Confidence 379999999999987 57789999999999998753 233333220 012678889999888875443
No 170
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.67 E-value=0.0032 Score=73.18 Aligned_cols=71 Identities=27% Similarity=0.250 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.||+-|.+|+.. ...+++|.|+.|||||.+...-+.+.+... | .+..+|++|+.|+..|.++..++.+.+.
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~---~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC---G---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhc---C---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 489999998854 467899999999999999777776666431 1 1356899999999999999999988764
No 171
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.67 E-value=0.0053 Score=71.22 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=62.2
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+-|.+++-. ...+++|.|..|||||.+.+--+...+... ...+.+|++++.++..|.++..++..++
T Consensus 195 ~~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~------~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARAGWLLARG------QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC------CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 3799999998853 456889999999999999777666555432 1235689999999999999999998877
Q ss_pred CCCCcEEEEEe
Q 007492 520 SPLNMIVRELT 530 (601)
Q Consensus 520 ~~~~i~V~~l~ 530 (601)
...++.|.-++
T Consensus 266 g~~~v~v~TFH 276 (684)
T PRK11054 266 GTEDITARTFH 276 (684)
T ss_pred CCCCcEEEeHH
Confidence 54445544433
No 172
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.60 E-value=0.0027 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=15.1
Q ss_pred cCCceeEeccCCCchHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~i 478 (601)
++..++|+||+|+|||.+....+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 46688999999999999865533
No 173
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.56 E-value=0.01 Score=53.28 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++.+|+|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 67899999999999976544
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.43 E-value=0.0043 Score=55.05 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=29.4
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
+..+++++|+|+|||..+...+ ..+.. ....++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~---------~~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP---------PGGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC---------CCCCEEEECCEEccccC
Confidence 5689999999999999866533 22221 12357888877665443
No 175
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.42 E-value=0.025 Score=67.85 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.|++-|..++..++.++.-++|.++.|+|||.+ +-++...+.. .+.+++.++||---|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA---------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEecCcHHHHHHH
Confidence 799999999999985455678999999999986 3333333322 478899999998766554
No 176
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.40 E-value=0.0033 Score=74.07 Aligned_cols=128 Identities=14% Similarity=0.067 Sum_probs=87.2
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++++|.-.--+ ++ .--+.-+.||=|||+++.+|+.-.-. .|..|-+|+..--||.-=...+...+.
T Consensus 169 ~~yDVQliGgiv-Lh--~G~IAEM~TGEGKTLvAtlp~yLnAL----------~GkgVHvVTVNDYLA~RDaewmgply~ 235 (1112)
T PRK12901 169 VHYDVQLIGGVV-LH--QGKIAEMATGEGKTLVATLPVYLNAL----------TGNGVHVVTVNDYLAKRDSEWMGPLYE 235 (1112)
T ss_pred cccchHHhhhhh-hc--CCceeeecCCCCchhHHHHHHHHHHH----------cCCCcEEEEechhhhhccHHHHHHHHH
Confidence 456666554333 33 34578999999999999998754433 245677777888888876777777777
Q ss_pred CCCcEEEEEeC-CCcc-chhhcCCccEEEEChhhH--HHHHccCC---CCCccCCccEEEeccCcccC
Q 007492 521 PLNMIVRELTG-DMQL-SRNELEETQMIVTTPEKW--DVITRKSS---DMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 521 ~~~i~V~~l~G-d~~~-~~~~~~~~~IiVtTPekl--d~l~r~~~---~~~~~~~v~llIiDEaH~l~ 581 (601)
.+|++|++... ++.. .++..-.|+|..+|..-| |.+...-. +-...+...+.||||||.++
T Consensus 236 fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 236 FHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 78999998866 3333 344456899999999874 55543321 11122347799999999865
No 177
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.25 E-value=0.0091 Score=73.96 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC
Q 007492 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~ 521 (601)
+|+-|.+++.. .+.|++|.|.-|||||.+.+--+++.+.. | ...-++++|+=|++.|.++..++.+.+..
T Consensus 2 ~t~~Q~~ai~~---~~~~~lv~A~AGsGKT~~lv~r~~~~~~~----~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 2 WTDEQWQAIYT---RGQNILVSASAGSGKTAVLVERIIKKILR----G---VDIDRLLVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhc----C---CCHhhEEEEeccHHHHHHHHHHHHHHHHH
Confidence 68899999863 68899999999999999988777776654 2 12347999999999999999998887643
Q ss_pred CCcEEEEEeCCCccchhhcCCccEEEEChhhH--HHHHccCCCCCccCCccEEEeccCcc-cCCCChHHHHHHHHH
Q 007492 522 LNMIVRELTGDMQLSRNELEETQMIVTTPEKW--DVITRKSSDMSLSMLVKLLIIDEVHL-LNDDRGPVIEALVAR 594 (601)
Q Consensus 522 ~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl--d~l~r~~~~~~~~~~v~llIiDEaH~-l~d~rg~~le~iv~r 594 (601)
.- ..-.....+.++...-...-|+|-..| .++........+...++ |.||... ++ +..+++.++.+
T Consensus 72 ~~---~~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~--i~de~e~~ll--~~e~~~~~~e~ 140 (1232)
T TIGR02785 72 AL---QQEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFR--ILTDTEQLLL--IKEVVDDVFEE 140 (1232)
T ss_pred HH---hcCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCce--eCCHHHHHHH--HHHHHHHHHHH
Confidence 20 000011112222222345679999885 55554444444444443 5887765 11 24555555544
No 178
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.23 E-value=0.0097 Score=69.18 Aligned_cols=71 Identities=25% Similarity=0.228 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.||+-|.+++.. ...+++|.|+.|||||.+..--+.+.+... | .+..++++|+.|+..|.++..++.+.+.
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~---~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNC---G---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhc---C---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 378999998754 467999999999999999777776666431 1 1356899999999999999999988764
No 179
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.23 E-value=0.062 Score=65.08 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
..|++-|..++..+...+.-++|.++.|+|||.+.-. +...+. ..+.+++-++||-.-|..+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e---------~~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWE---------AAGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHH---------HcCCeEEEEcCcHHHHHHHH
Confidence 4799999999998765566789999999999977433 333222 25789999999977776653
No 180
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.23 E-value=0.011 Score=69.42 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=57.4
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+-|.+++.. ...+++|.|..|||||.+...-+.+.+... | .+..+|++|+.|+..|.++..++.+++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~---~---v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE---N---ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcC---C---CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4699999998853 467999999999999999766666655431 1 235689999999999999999998876
Q ss_pred C
Q 007492 520 S 520 (601)
Q Consensus 520 ~ 520 (601)
.
T Consensus 74 ~ 74 (715)
T TIGR01075 74 G 74 (715)
T ss_pred c
Confidence 4
No 181
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.016 Score=63.73 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHh---c-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 442 LNRIQSRIFQTVYY---T-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 442 l~~iQ~~~i~~~l~---~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|.--|-+||..+.. . .+.-.+-+-||||||++..-.|-+ -+.-.|+++|.|.||.|.+.+|+.
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~-------------~~rPtLV~AhNKTLAaQLy~Efk~ 79 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAK-------------VQRPTLVLAHNKTLAAQLYSEFKE 79 (663)
T ss_pred CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHH-------------hCCCeEEEecchhHHHHHHHHHHH
Confidence 44445555555432 2 346678899999999985443322 234589999999999999999999
Q ss_pred hcCCCC
Q 007492 518 RLSPLN 523 (601)
Q Consensus 518 ~l~~~~ 523 (601)
++...-
T Consensus 80 fFP~Na 85 (663)
T COG0556 80 FFPENA 85 (663)
T ss_pred hCcCcc
Confidence 987543
No 182
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.17 E-value=0.028 Score=63.18 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC-C
Q 007492 443 NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS-P 521 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~-~ 521 (601)
...+.+.+..+ ..+.-++|.+.||||||.-.. +.++. +|..+ ..-|-+.-|.|.-|.-++.+...-+. .
T Consensus 358 f~~R~~ll~~i-r~n~vvvivgETGSGKTTQl~----QyL~e---dGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 358 FACRDQLLSVI-RENQVVVIVGETGSGKTTQLA----QYLYE---DGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHHH-hhCcEEEEEecCCCCchhhhH----HHHHh---ccccc--CCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34566666555 367788999999999998622 22222 23332 33566677999998888887776542 2
Q ss_pred CCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcc
Q 007492 522 LNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 522 ~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
+|-.|+.-..-...+. ..+.|=..|-+.| .|....-.......+||+||||.
T Consensus 428 lG~~VGYsIRFEdvT~---~~T~IkymTDGiL---LrEsL~d~~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTS---EDTKIKYMTDGIL---LRESLKDRDLDKYSVIIMDEAHE 479 (1042)
T ss_pred cccccceEEEeeecCC---CceeEEEeccchH---HHHHhhhhhhhheeEEEechhhh
Confidence 3433332211112221 2467778888874 22221111222478999999997
No 183
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.15 E-value=0.013 Score=68.86 Aligned_cols=72 Identities=26% Similarity=0.292 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+-|.+++.. ...+++|.|..|||||.+...-+.+.+... | .+..+|++|+-|+..|.++..++.+++
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~---~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE---N---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcC---C---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3699999998853 467999999999999999766666555321 1 235689999999999999999998876
Q ss_pred C
Q 007492 520 S 520 (601)
Q Consensus 520 ~ 520 (601)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 4
No 184
>PRK06526 transposase; Provisional
Probab=96.12 E-value=0.025 Score=57.90 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=30.0
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
..+.|+++++|+|+|||..+...... +.. .+.+++|+ ....|+.++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~-a~~---------~g~~v~f~-t~~~l~~~l 141 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIR-ACQ---------AGHRVLFA-TAAQWVARL 141 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHH-HHH---------CCCchhhh-hHHHHHHHH
Confidence 35789999999999999987654433 322 34556554 334455554
No 185
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.08 E-value=0.045 Score=50.47 Aligned_cols=40 Identities=38% Similarity=0.501 Sum_probs=27.8
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
++|++|+|+|||..+...+..... .+..++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----------cCCEEEEEECCcchHH
Confidence 689999999999987654433221 3667888877655544
No 186
>PRK04296 thymidine kinase; Provisional
Probab=96.05 E-value=0.018 Score=56.13 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=24.7
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
=.++++|.|+|||..++-.+.+. .. .+.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~-~~---------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNY-EE---------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH-HH---------cCCeEEEEec
Confidence 46889999999998766544443 22 3568888866
No 187
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.00 E-value=0.016 Score=61.26 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=33.1
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.+++.|...+..++..+.|++|++|||||||.. +-+++..+
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~ 172 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEM 172 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 467889999988888899999999999999954 45555543
No 188
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.92 E-value=0.035 Score=64.75 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=82.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
...||.-|++|+-.++.+..-.||-+-+|+|||.+-.. +++.+.. .+.+|+..+=|..-++-+.-++..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~---------~gkkVLLtsyThsAVDNILiKL~~- 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA---------LGKKVLLTSYTHSAVDNILIKLKG- 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH---------cCCeEEEEehhhHHHHHHHHHHhc-
Confidence 34799999999999997777789999999999987443 2333332 478999999999888887766654
Q ss_pred cCCCCcEEEEEeCCCccc--------------------hhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccC
Q 007492 519 LSPLNMIVRELTGDMQLS--------------------RNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEV 577 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~--------------------~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEa 577 (601)
.++.+..+..+..+- +..+..+.|+.||=--+ +.+. .. +.+++.|||||
T Consensus 736 ---~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~-R~FD~cIiDEA 805 (1100)
T KOG1805|consen 736 ---FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VN-RQFDYCIIDEA 805 (1100)
T ss_pred ---cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hc-cccCEEEEccc
Confidence 444444333332221 12235678888884322 1111 11 24899999999
Q ss_pred cccCC
Q 007492 578 HLLND 582 (601)
Q Consensus 578 H~l~d 582 (601)
-.++-
T Consensus 806 SQI~l 810 (1100)
T KOG1805|consen 806 SQILL 810 (1100)
T ss_pred ccccc
Confidence 98875
No 189
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.89 E-value=0.037 Score=60.13 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=75.3
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh-HHHHHHHHHHhhcCCCCcEEEEEeCCCccch
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA-LAAEVTRTFSSRLSPLNMIVRELTGDMQLSR 537 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra-La~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~ 537 (601)
-.+++++.|||||.++.+.++..+... .++.+++++.|+.. |-.-++..+...+..+|+....-.....+.-
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEE
Confidence 357899999999999988887777652 14678999999988 6666777787776666654221112221111
Q ss_pred hhcC-CccEEEECh-hhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 538 NELE-ETQMIVTTP-EKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 538 ~~~~-~~~IiVtTP-ekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
.... +..|++..- +..+.+... ..+.++++|||..+.. ..++.++.|+
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik~~-------~~~~~~~idEa~~~~~---~~~~~l~~rl 125 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLKSG-------AGIAIIWFEEASQLTF---EDIKELIPRL 125 (396)
T ss_pred EecCCCeEEEeecccCChhHhhCc-------ceeeeehhhhhhhcCH---HHHHHHHHHh
Confidence 1112 344555443 323222211 1268999999999963 5888888774
No 190
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.85 E-value=0.038 Score=58.41 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=48.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCc-eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNEN-ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n-~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
|..-.|..|.-|+..++...-+ +.+.++.|||||.-|+.+.+...... +...|+|+-=|+..+..
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~-------~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER-------KRYRKIIVTRPTVPVGE 290 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH-------hhhceEEEecCCcCccc
Confidence 8888899999999998854433 45689999999999998887766542 23456777768766543
No 191
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=95.77 E-value=0.055 Score=56.16 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHHhc---------CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT---------NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~---------~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.|...|-+++-.|++. ..-+++-=.||.||.....-.|+....+ ...|.|+|..+-.|-...
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---------Gr~r~vwvS~s~dL~~Da 107 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---------GRKRAVWVSVSNDLKYDA 107 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------CCCceEEEECChhhhhHH
Confidence 5788898888776532 3356777789999988876667766554 355799999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHcc--CCCCCccC--------CccEEEeccCcccC
Q 007492 512 TRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRK--SSDMSLSM--------LVKLLIIDEVHLLN 581 (601)
Q Consensus 512 ~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~--~~~~~~~~--------~v~llIiDEaH~l~ 581 (601)
.+.++..... .+.+..+.. ............||.+|+-.|..-.++ .....+.+ .=.+||+||+|...
T Consensus 108 ~RDl~DIG~~-~i~v~~l~~-~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 108 ERDLRDIGAD-NIPVHPLNK-FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HHHHHHhCCC-cccceechh-hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 9999876543 344433322 111111112456999999887333211 11111111 12489999999987
Q ss_pred C
Q 007492 582 D 582 (601)
Q Consensus 582 d 582 (601)
.
T Consensus 186 n 186 (303)
T PF13872_consen 186 N 186 (303)
T ss_pred C
Confidence 6
No 192
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=95.62 E-value=0.054 Score=61.95 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=84.8
Q ss_pred CCcHHHHHHH---HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIF---QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i---~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
+|-++|.--+ -.+++.+-+.++.-.-|-|||.-+ ++.+..+.+. ....-=|||||.-.| .-+.++|.+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~-------g~~gpHLVVvPsSTl-eNWlrEf~k 469 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI-------GNPGPHLVVVPSSTL-ENWLREFAK 469 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc-------CCCCCcEEEecchhH-HHHHHHHHH
Confidence 3667776544 445666778899999999999653 2333334332 123346788898766 446677777
Q ss_pred hcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc--CCccEEEeccCcccCCCChHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS--MLVKLLIIDEVHLLNDDRGPVI 588 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~--~~v~llIiDEaH~l~d~rg~~l 588 (601)
.+. .++|..++|...-.+.. -...+|||||+... .....+.+|+ +++.++|+||.|.|-......+
T Consensus 470 wCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la---~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 470 WCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLA---ASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred hCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecc---cCChHHHHHHHhccccEEEecchhhhhccchHHH
Confidence 764 46788889976433211 12689999999764 1111222222 2478999999999977433333
Q ss_pred H
Q 007492 589 E 589 (601)
Q Consensus 589 e 589 (601)
.
T Consensus 545 ~ 545 (941)
T KOG0389|consen 545 K 545 (941)
T ss_pred H
Confidence 3
No 193
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.54 E-value=0.033 Score=65.50 Aligned_cols=72 Identities=25% Similarity=0.317 Sum_probs=57.6
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+-|.+++.. ...+++|.|..|||||.+...-+.+.+... | ....+|++++-|+..|.++..++.+++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~---~---i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK---N---VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC---C---CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3699999998864 467999999999999999777676666431 1 134689999999999999999998775
Q ss_pred C
Q 007492 520 S 520 (601)
Q Consensus 520 ~ 520 (601)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 194
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.54 E-value=0.046 Score=61.38 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC-CCC
Q 007492 445 IQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS-PLN 523 (601)
Q Consensus 445 iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~-~~~ 523 (601)
+--+.+.++ +.+.-++|.+.||||||.- +| +.+. ++.....+.+|=+.-|.|--|.-+..+...-.. .+|
T Consensus 269 ykdell~av-~e~QVLiI~GeTGSGKTTQ--iP--QyL~----EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 269 YKDELLKAV-KEHQVLIIVGETGSGKTTQ--IP--QYLY----EAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred hHHHHHHHH-HhCcEEEEEcCCCCCcccc--cc--HHHH----hcccccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 334455554 5788889999999999975 22 1121 122334555677888999887777666554321 122
Q ss_pred cEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcc
Q 007492 524 MIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 524 i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
-.|+--..-..- -..++-|=+.|-+.| ..+... .+++ ...+|||||||.
T Consensus 340 ~eVGYsIRFEdc---TSekTvlKYMTDGmLlREfL~e-pdLa---sYSViiiDEAHE 389 (902)
T KOG0923|consen 340 HEVGYSIRFEDC---TSEKTVLKYMTDGMLLREFLSE-PDLA---SYSVIIVDEAHE 389 (902)
T ss_pred cccceEEEeccc---cCcceeeeeecchhHHHHHhcc-cccc---ceeEEEeehhhh
Confidence 222110000010 113467888999985 333322 2333 578999999997
No 195
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.51 E-value=0.018 Score=55.18 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=33.9
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
++|.+|+|+|||..++--+...+. .+.+++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999987665554432 3567888864 45677777666543
No 196
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.49 E-value=0.037 Score=58.54 Aligned_cols=41 Identities=27% Similarity=0.475 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.+++.|...+..++..+.|++||+|||||||... -+++..+
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i 168 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEI 168 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 4778899999988888899999999999999874 3455554
No 197
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.43 E-value=0.044 Score=57.45 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
.+++-|...+..++..+.+++|++|||||||... -+++..+.
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~ 157 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIA 157 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhh
Confidence 4677888888888878889999999999999874 33555543
No 198
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.29 E-value=0.015 Score=66.14 Aligned_cols=139 Identities=18% Similarity=0.257 Sum_probs=86.9
Q ss_pred CCcHHHHHHHHHHHhcC-CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH-HHHHhh
Q 007492 441 SLNRIQSRIFQTVYYTN-ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT-RTFSSR 518 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~-~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~-~~~~~~ 518 (601)
..+|+|.+...++-..+ +.+.++.++-+|||.+.+..+...+.. ....++|+.||..+|.... .+|...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ---------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe---------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 67899999988864322 588999999999999766655544433 5678999999999999876 455555
Q ss_pred cCCCCcEEEEEe------CCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC---CChHHHH
Q 007492 519 LSPLNMIVRELT------GDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND---DRGPVIE 589 (601)
Q Consensus 519 l~~~~i~V~~l~------Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d---~rg~~le 589 (601)
+.....--..+. ++..+....+.+..|.++.-.. ...+.-. .++++++||++.+-+ .-|..++
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S-------~~~l~s~-~~r~~~~DEvD~~p~~~~~eGdp~~ 158 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS-------PSNLRSR-PARYLLLDEVDRYPDDVGGEGDPVE 158 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC-------CcccccC-CcCEEEEechhhccccCccCCCHHH
Confidence 443211001111 1222222333344444443221 1122222 489999999999953 4677887
Q ss_pred HHHHHHH
Q 007492 590 ALVARTL 596 (601)
Q Consensus 590 ~iv~r~~ 596 (601)
..-.|+-
T Consensus 159 la~~R~~ 165 (557)
T PF05876_consen 159 LAEKRTK 165 (557)
T ss_pred HHHHHHh
Confidence 7777753
No 199
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.24 E-value=0.038 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
..++|..+|.|+|||-++.+..-+..
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 46899999999999999887554433
No 200
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.057 Score=58.14 Aligned_cols=27 Identities=33% Similarity=0.679 Sum_probs=20.1
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQ 484 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~ 484 (601)
..|+++.+|||+|||.+... +++++..
T Consensus 42 p~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 34799999999999999666 4444433
No 201
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.09 E-value=0.15 Score=50.74 Aligned_cols=21 Identities=10% Similarity=0.350 Sum_probs=17.7
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|+|+|||..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356899999999999987654
No 202
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.09 E-value=0.2 Score=55.08 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHH---HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 438 GYKSLNRIQSRIF---QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 438 g~~~l~~iQ~~~i---~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.|...+|-|..-. ...+..+.+.|+-+|+|+|||.+.+--++.....+ +..-.|+||-.-|..=+.-...+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~------p~~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY------PDEHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC------CcccceEEEecCcchHHHHHHHH
Confidence 5667778887643 44455688999999999999988655444433322 12346777777665444433333
No 203
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.02 E-value=0.054 Score=58.91 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCc
Q 007492 445 IQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNM 524 (601)
Q Consensus 445 iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i 524 (601)
-|..-|-..+..+.-+++++.||||||.----..+.....+ ...+...-|.|.-|.++..+...-. .+
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---------~~~v~CTQprrvaamsva~RVadEM---Dv 117 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---------LTGVACTQPRRVAAMSVAQRVADEM---DV 117 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh---------ccceeecCchHHHHHHHHHHHHHHh---cc
Confidence 34555666777788999999999999975322222222221 2456667789988888877765533 33
Q ss_pred EEEEEeCCCccchhhcCCccEEEEChhhH------HHHHccCCCCCccCCccEEEeccCcc
Q 007492 525 IVRELTGDMQLSRNELEETQMIVTTPEKW------DVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 525 ~V~~l~Gd~~~~~~~~~~~~IiVtTPekl------d~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
..+.=.|-. +.. .. -+||..+ ..+.|..-.-.+....++||+||||.
T Consensus 118 ~lG~EVGys-Irf---Ed----C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 118 TLGEEVGYS-IRF---ED----CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHE 170 (699)
T ss_pred ccchhcccc-ccc---cc----cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhh
Confidence 332222211 110 11 1344431 12233332233445689999999996
No 204
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.97 E-value=0.16 Score=59.60 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=26.3
Q ss_pred ce-eEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 459 NI-LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 459 n~-lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
++ +|++|||+|||.+.... ++.+....... ....+.++||=-+
T Consensus 782 nvLYIyG~PGTGKTATVK~V-LrELqeeaeqk--~lp~f~vVYINCm 825 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV-IQLLQHKTKQK--LLPSFNVFEINGM 825 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHHHhhc--cCCCceEEEEeCC
Confidence 44 59999999999997653 34443321111 1234778888443
No 205
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.90 E-value=0.081 Score=59.16 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
++-+-|-+++.. .++.-++|++..|||||.+|+--+...++.++ |++. ...|+++.|.+-+..-+.+.+
T Consensus 212 TIQkEQneIIR~--ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R--~~l~--~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 212 TIQKEQNEIIRF--EKNKILVVQGAAGSGKTTIALHRVAYLLYGYR--GPLQ--AKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred HhhHhHHHHHhc--cCCCeEEEecCCCCCchhHHHHHHHHHHhccc--cccc--cCceEEEcCcHHHHHHHHHhc
Confidence 444555555543 34678899999999999999887777776654 3333 233999999999887655544
No 206
>PRK08181 transposase; Validated
Probab=94.89 E-value=0.24 Score=51.12 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=32.6
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
...+.|+++++|+|+|||..+.... +.+.. .+.+++|+ ++..|+.++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia-~~a~~---------~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIG-LALIE---------NGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHH-HHHHH---------cCCceeee-eHHHHHHHHH
Confidence 3467899999999999998766433 33332 35566655 4567777653
No 207
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.85 E-value=0.076 Score=61.90 Aligned_cols=127 Identities=15% Similarity=0.095 Sum_probs=90.7
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHH-HHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL-HEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il-~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
.+..+|.-.- +. ....-+.-..||=|||+++.+|+. ..+ .+..+.+|...--||.--...+...+
T Consensus 80 ~~~dVQliG~--i~-lh~g~iaEM~TGEGKTL~atlp~ylnaL-----------~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 80 RHFDVQLLGG--IV-LHLGDIAEMRTGEGKTLVATLPAYLNAL-----------AGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred ChhhHHHhhh--hh-hcCCceeeeecCCchHHHHHHHHHHHhc-----------CCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 3445655433 22 345667899999999999999874 332 35567788888889998888888888
Q ss_pred CCCCcEEEEEeCCCccc-hhhcCCccEEEEChhhH--HHHHccC---CCCCccCCccEEEeccCcccC
Q 007492 520 SPLNMIVRELTGDMQLS-RNELEETQMIVTTPEKW--DVITRKS---SDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 520 ~~~~i~V~~l~Gd~~~~-~~~~~~~~IiVtTPekl--d~l~r~~---~~~~~~~~v~llIiDEaH~l~ 581 (601)
..+|++|+....+++.. ++..-.|+|..+|...+ |++...- ..-.+.....+-|+||+|-++
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99999999999888765 34456799999999874 5444221 111122247789999999865
No 208
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.85 E-value=0.13 Score=53.42 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=33.7
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHh-hhccc-CCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIG-QHFRD-GYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~-~~~~~-~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
.|++++++||.|||.+. +++. .|... ..-...-+-+++-+|...-....|..+-..+
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 59999999999999863 3222 22111 0001112455666788877777666654433
No 209
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.79 E-value=0.13 Score=50.92 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.1
Q ss_pred cCCceeEeccCCCchHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~i 478 (601)
.+.++++++|+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999876533
No 210
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.74 E-value=0.093 Score=55.32 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNI 473 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~v 473 (601)
-.|.++++-|...+..+.....|+|||+.||||||..
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 3577999999999999997677999999999999975
No 211
>PRK08727 hypothetical protein; Validated
Probab=94.67 E-value=0.21 Score=50.29 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=24.2
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA 502 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la 502 (601)
..+++++|+|+|||..+.. +.+.+.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~---------~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQ---------AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH---------cCCcEEEEe
Confidence 4589999999999987654 3333333 356788874
No 212
>PHA02533 17 large terminase protein; Provisional
Probab=94.66 E-value=0.43 Score=53.99 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+|+|...+..+. .++-.+++.|=..|||.++...++..... .++..+++++|++.-|..+.+.++....
T Consensus 59 ~L~p~Q~~i~~~~~-~~R~~ii~~aRq~GKStl~a~~al~~a~~--------~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMH-KNRFNACNLSRQLGKTTVVAIFLLHYVCF--------NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHh-cCeEEEEEEcCcCChHHHHHHHHHHHHHh--------CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 58899999988764 35555788999999999977555544332 2456999999999999999888876544
No 213
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.65 E-value=0.13 Score=55.57 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=25.3
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA 502 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la 502 (601)
..+++|+||+|+|||.+.-. +++.+... ..+..++|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~-v~~~l~~~-------~~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKK-VFEELEEI-------AVKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-------cCCcEEEEEE
Confidence 46899999999999998544 33433321 1246677773
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.54 E-value=0.15 Score=51.51 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=38.5
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|..++|.+|+|+|||..++-.+...+. .+.+++|++ +.+-..++.+++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----------~ge~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCcEEEEE-eeCCHHHHHHHHHH
Confidence 4789999999999999988765655442 367899998 45666677776654
No 215
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.52 E-value=0.15 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=19.0
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
+.+++|++|+|+|||.++.. +++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 46899999999999987544 34444
No 216
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.50 E-value=0.11 Score=53.18 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=35.9
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
..|..++|.||||+|||..++-.+.+.... .+.+++|+.- -.-..++..++...
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---------~g~~vl~iS~-E~~~~~~~~r~~~~ 81 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ---------HGVRVGTISL-EEPVVRTARRLLGQ 81 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---------cCceEEEEEc-ccCHHHHHHHHHHH
Confidence 358899999999999998876655544322 2678888863 23345555555444
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.44 E-value=0.078 Score=51.20 Aligned_cols=48 Identities=23% Similarity=0.460 Sum_probs=30.5
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
+..+.|+++.+|+|+|||..+...+- .+.. .+..++|+ ++.+|+.++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~-~~~~---------~g~~v~f~-~~~~L~~~l~ 91 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIAN-EAIR---------KGYSVLFI-TASDLLDELK 91 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHH-HHHH---------TT--EEEE-EHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHH-Hhcc---------CCcceeEe-ecCceecccc
Confidence 34588999999999999999766443 3433 25556664 6667777654
No 218
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.29 Score=54.62 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=17.9
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
+.+|+++|.|+|||.+|.+..
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 468999999999999887644
No 219
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.37 E-value=0.013 Score=56.51 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=46.3
Q ss_pred eEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhc
Q 007492 461 LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNEL 540 (601)
Q Consensus 461 lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~ 540 (601)
++.|+-|-|||.+.-+.+.+.+.. ...+|++.+|..+=++.+++.+.+.+..++.+............-..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK---------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------------EEEE-SS--S-HHHHHCC-------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh---------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 578999999998876655443322 34689999999999999888777766655544311000000000111
Q ss_pred CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 541 EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 541 ~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
.+..|-...|..+ .. ..+..++||||||=.+- =|.+..++
T Consensus 72 ~~~~i~f~~Pd~l---~~------~~~~~DlliVDEAAaIp---~p~L~~ll 111 (177)
T PF05127_consen 72 NKQRIEFVAPDEL---LA------EKPQADLLIVDEAAAIP---LPLLKQLL 111 (177)
T ss_dssp -CCC--B--HHHH---CC------T----SCEEECTGGGS----HHHHHHHH
T ss_pred ccceEEEECCHHH---Hh------CcCCCCEEEEechhcCC---HHHHHHHH
Confidence 2344555555443 11 11125899999998876 35555554
No 220
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.28 E-value=0.35 Score=53.60 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=33.7
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
..++++||+|+|||..+ -++.+.+... .++.+++|+.+ ..+..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-------~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-------FSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-------CCCCeEEEEEH-HHHHHHHHHHHH
Confidence 45899999999999664 4455555431 24678888766 566666665553
No 221
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.20 E-value=0.21 Score=56.14 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.0
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
..+|+++|.|+|||.+|.+-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999999987744
No 222
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.18 E-value=0.26 Score=53.46 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=35.4
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEE
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIV 526 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V 526 (601)
+..+++++|||+|||.++.--+.+..... ...+.++.+++ +.|.-+.++...+... +|+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~------~~~g~~V~lit~Dt~R~aa~eQL~~~a~~---lgvpv 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS------DDKSLNIKIITIDNYRIGAKKQIQTYGDI---MGIPV 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh------ccCCCeEEEEeccCccHHHHHHHHHHhhc---CCcce
Confidence 46789999999999988643222211110 01234555444 6677777766665544 35444
No 223
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.14 E-value=0.071 Score=56.90 Aligned_cols=36 Identities=25% Similarity=0.564 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 446 QSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 446 Q~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
....+..+...+.|++|++|||||||... -+++..+
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i 186 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAI 186 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHccc
Confidence 44556666777899999999999999874 3344443
No 224
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.14 E-value=0.19 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.9
Q ss_pred CCceeEeccCCCchHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~ 477 (601)
..++++.+|+|+|||.++-+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 458999999999999998653
No 225
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.14 E-value=0.15 Score=51.84 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHH---Hhc-CCceeEeccCCCchHHHHHH
Q 007492 442 LNRIQSRIFQTV---YYT-NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 442 l~~iQ~~~i~~~---l~~-~~n~lv~ApTGsGKT~va~l 476 (601)
+++.+.+++..+ +.. ...+++++|+|+|||..+..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 445555555443 233 34689999999999987654
No 226
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.13 E-value=0.15 Score=59.07 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHHhc---C-CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT---N-ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~---~-~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+-.|..+|..+.+. + .+.++.+-||||||++..- +++.+ +..+|||+|.+.+|.|++..|+
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~------------~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV------------NRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh------------CCCEEEEECCHHHHHHHHHHHH
Confidence 5778888888776432 3 3667999999999998554 33321 3468999999999999999999
Q ss_pred hhcCC
Q 007492 517 SRLSP 521 (601)
Q Consensus 517 ~~l~~ 521 (601)
.++..
T Consensus 76 ~f~p~ 80 (655)
T TIGR00631 76 EFFPE 80 (655)
T ss_pred HhCCC
Confidence 88753
No 227
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.09 E-value=0.15 Score=61.00 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHH--HHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQT--VYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~--~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|+.+|++-+.- .+++ +=+.++|---|-|||+-.+-.+....+.. +.+......+-.+||||. .|+.-+..++.+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r-~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKR-RSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhh-cccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 466777775432 2222 44789999999999998765554444432 112222223448999997 799999999998
Q ss_pred hcCCCCcEEEEEeCCCccc---hhhcCCccEEEEChhhH----HHHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 518 RLSPLNMIVRELTGDMQLS---RNELEETQMIVTTPEKW----DVITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~---~~~~~~~~IiVtTPekl----d~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
++.. ++|..+.|..... +.+..+++|||+.++.+ +.+.... -.++|+||-|-|-..
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~--------wNYcVLDEGHVikN~ 1115 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKID--------WNYCVLDEGHVIKNS 1115 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcc--------cceEEecCcceecch
Confidence 8865 6777788865543 33456799999999975 3333221 358999999999763
No 228
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.05 E-value=0.31 Score=56.68 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHHhc---C-CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT---N-ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~---~-~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+..|..+|..+.+. + .+.++.+.||||||+++.. +++. .+..+|||+|+...|.+++..+.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~------------~~r~vLIVt~~~~~A~~l~~dL~ 78 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIAR------------LQRPTLVLAHNKTLAAQLYSEFK 78 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHH------------hCCCEEEEECCHHHHHHHHHHHH
Confidence 7999999999887532 2 2577999999999988543 3322 13469999999999999999998
Q ss_pred hhcCC
Q 007492 517 SRLSP 521 (601)
Q Consensus 517 ~~l~~ 521 (601)
.++..
T Consensus 79 ~~~~~ 83 (652)
T PRK05298 79 EFFPE 83 (652)
T ss_pred HhcCC
Confidence 88753
No 229
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=0.18 Score=56.28 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=67.8
Q ss_pred EeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC-CCcEEEEEeCCCccchh--
Q 007492 462 VCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP-LNMIVRELTGDMQLSRN-- 538 (601)
Q Consensus 462 v~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~-~~i~V~~l~Gd~~~~~~-- 538 (601)
..+.||||||.+..--||+...+ +...-|+.|..-..+.-....|..-+.. +=..-....+|..+.-+
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 45789999999987778887654 3445677776666555554444321110 00000011122111100
Q ss_pred -----hcCCccEEEEChhhH--HHHHccCCCCCcc--CCcc-EEEeccCcccCC-C---------ChHHHHHHHHHHHh
Q 007492 539 -----ELEETQMIVTTPEKW--DVITRKSSDMSLS--MLVK-LLIIDEVHLLND-D---------RGPVIEALVARTLR 597 (601)
Q Consensus 539 -----~~~~~~IiVtTPekl--d~l~r~~~~~~~~--~~v~-llIiDEaH~l~d-~---------rg~~le~iv~r~~r 597 (601)
......|..||.+.| |....+-....+. ...+ +++-||+|+|.. . -...+++.|.-.++
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 223578999999996 4444333222211 1233 457799999985 1 22456666655444
No 230
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.13 Score=57.08 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=16.9
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
.+|+++|.|+|||.+|.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999987643
No 231
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.33 Score=55.80 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHhcC---CceeEeccCCCchHHHHHHHH
Q 007492 449 IFQTVYYTN---ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 449 ~i~~~l~~~---~n~lv~ApTGsGKT~va~l~i 478 (601)
.+..++..+ .-+|+++|.|+|||.+|.+.+
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344444444 356999999999999887643
No 232
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.80 E-value=0.75 Score=52.88 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=45.0
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCC
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL 522 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~ 522 (601)
..-.++.+|=|.|||.+..+.+...+.. .+.+|+|.||...-++++.....+.+..+
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISF---------LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHh---------cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 4456778999999999987666654421 35799999999999999999888877633
No 233
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.31 Score=55.52 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=17.9
Q ss_pred CceeEeccCCCchHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il 479 (601)
+-+|+++|.|+|||.++-+..-
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999877543
No 234
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.72 E-value=0.089 Score=50.98 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHH
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va 474 (601)
..+++-|...+..++..+.++++++|||||||..+
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 36788899999999988999999999999999874
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.71 E-value=0.47 Score=52.63 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=31.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..++++||+|+|||..+.. +.+.+... .++.+++|+. ...+..++...+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-------~~~~~v~yi~-~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-------NPNAKVVYVT-SEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-------CCCCeEEEEE-HHHHHHHHHHHH
Confidence 4689999999999988644 44444331 1356778874 445555554443
No 236
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.71 E-value=0.43 Score=52.06 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=29.6
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
..++++||+|+|||..+. ++.+.+... ..+.+++|+.. ..+..++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-------~~~~~v~yi~~-~~~~~~~~ 182 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-------NPNAKVVYVSS-EKFTNDFV 182 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-------CCCCcEEEEEH-HHHHHHHH
Confidence 357899999999999864 355555431 13567888853 34444433
No 237
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.70 E-value=0.19 Score=59.74 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=89.0
Q ss_pred CCcHHHHHHH---HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIF---QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i---~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|+.+|..-+ -.+|+++-|.|+.---|-|||.- .+.+|.++... .| .=+--|||+||-.+.+ +.-+|++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACe--eg----nWGPHLIVVpTsviLn-WEMElKR 686 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACE--EG----NWGPHLIVVPTSVILN-WEMELKR 686 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhc--cc----CCCCceEEeechhhhh-hhHHHhh
Confidence 4567777644 44577788999999999999976 33444444331 11 1123477888876654 3344555
Q ss_pred hcCCCCcEEEEEeCCCccchhh---c---CCccEEEEChhhH--H--HHHccCCCCCccCCccEEEeccCcccCCCChHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNE---L---EETQMIVTTPEKW--D--VITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPV 587 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~---~---~~~~IiVtTPekl--d--~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~ 587 (601)
.+ -|++|..++|...-.+.. . +..||.||.+..+ | .+.|+ +-+++|+||+|.+-.-+...
T Consensus 687 wc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrk--------rWqyLvLDEaqnIKnfksqr 756 (1958)
T KOG0391|consen 687 WC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRK--------RWQYLVLDEAQNIKNFKSQR 756 (1958)
T ss_pred hC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhh--------ccceeehhhhhhhcchhHHH
Confidence 44 378899999976543221 1 3579999999874 2 23332 24799999999999877788
Q ss_pred HHHHHH
Q 007492 588 IEALVA 593 (601)
Q Consensus 588 le~iv~ 593 (601)
|++++.
T Consensus 757 WQAlln 762 (1958)
T KOG0391|consen 757 WQALLN 762 (1958)
T ss_pred HHHHhc
Confidence 888775
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.70 E-value=0.22 Score=50.88 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=38.4
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
+..+.|+++.+|+|+|||..+...... +.+ .+ .-++++++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~-l~~---------~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNE-LLK---------AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHH-HHH---------cC-CeEEEEEHHHHHHHHHHHHh
Confidence 446889999999999999997664444 434 24 44555688899998877665
No 239
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.64 E-value=0.29 Score=48.99 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=16.4
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++|+++|.|.|||..|.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4799999999999988766
No 240
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.35 Score=55.91 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=17.5
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
..+|+++|.|+|||.++.+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999887643
No 241
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.63 E-value=0.38 Score=56.00 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.6
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-+|+++|.|+|||.++.+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999998766
No 242
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=93.59 E-value=0.19 Score=60.22 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHHH---hcCCceeEeccCCCchHHH---HHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 440 KSLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNI---AMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~v---a~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
..|+.+|-.-+.-++ ..+.|+++.---|-|||.- |+-.+.+.... .| -.|+|+|.-.+.+ +.+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~---------~g-pflvvvplst~~~-W~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI---------HG-PFLVVVPLSTITA-WER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc---------cC-CeEEEeehhhhHH-HHH
Confidence 688889987654332 2588999999999999865 33333332211 22 3566777755543 445
Q ss_pred HHHhhcCCCCcEEEEEeCCCccchh------------hcCCccEEEEChhhH--HHHHccCCCCCccCCccEEEeccCcc
Q 007492 514 TFSSRLSPLNMIVRELTGDMQLSRN------------ELEETQMIVTTPEKW--DVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 514 ~~~~~l~~~~i~V~~l~Gd~~~~~~------------~~~~~~IiVtTPekl--d~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
.|.... .+++.+++|+...... ..-+.++++||++.+ |.-.-+ .+ .-++++|||||+
T Consensus 438 ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~--~i----~w~~~~vDeahr 508 (1373)
T KOG0384|consen 438 EFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS--KI----PWRYLLVDEAHR 508 (1373)
T ss_pred HHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc--cC----CcceeeecHHhh
Confidence 555443 5678889997543211 012589999999984 211111 11 146899999999
Q ss_pred cCCCChHHHHH
Q 007492 580 LNDDRGPVIEA 590 (601)
Q Consensus 580 l~d~rg~~le~ 590 (601)
|-..-...++.
T Consensus 509 LkN~~~~l~~~ 519 (1373)
T KOG0384|consen 509 LKNDESKLYES 519 (1373)
T ss_pred cCchHHHHHHH
Confidence 98644445544
No 243
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.52 E-value=0.38 Score=55.49 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHhcCC--c-eeEeccCCCchHHHHHHHH
Q 007492 450 FQTVYYTNE--N-ILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 450 i~~~l~~~~--n-~lv~ApTGsGKT~va~l~i 478 (601)
+..++..++ + +|+++|.|+|||.++.+-.
T Consensus 28 L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 28 LANALDLGRLHHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344444443 2 5899999999999987644
No 244
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.48 E-value=0.47 Score=52.61 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=53.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.|.-+++.+|+|+|||..++-.+.... . .+.+++|+.-. +-..|+..+..++ |+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~---------~g~~vlYvs~E-es~~qi~~ra~rl----g~~~~-------- 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-A---------AGGKVLYVSGE-ESASQIKLRAERL----GLPSD-------- 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-h---------cCCeEEEEEcc-ccHHHHHHHHHHc----CCChh--------
Confidence 366889999999999998666444322 2 35689999843 4455665554432 22110
Q ss_pred chhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 536 SRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 536 ~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.+.+.....++.+...... ...++||||+++.+..
T Consensus 136 --------~l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 --------NLYLLAETNLEAILATIEE----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred --------cEEEeCCCCHHHHHHHHHh----hCCCEEEEechhhhcc
Confidence 1223322233323222111 1478999999998764
No 245
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.47 E-value=0.24 Score=59.01 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=84.1
Q ss_pred CCCcHHHHHHHHHHH----hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 440 KSLNRIQSRIFQTVY----YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l----~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..+.++|.+.+.-.. ..+.+.+++-.-|.|||.-.+..+.+..... ....+..+++||+ +++..+..+|
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~------~~~~~~~liv~p~-s~~~nw~~e~ 409 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI------KVYLGPALIVVPA-SLLSNWKREF 409 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc------cCCCCCeEEEecH-HHHHHHHHHH
Confidence 467777887764422 2367888889999999988766555522211 1114578888888 6667777778
Q ss_pred HhhcCCCCcEEEEEeCCCcc-c--h---hhcCC------ccEEEEChhhHHHH---HccCCCCCccCCccEEEeccCccc
Q 007492 516 SSRLSPLNMIVRELTGDMQL-S--R---NELEE------TQMIVTTPEKWDVI---TRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~-~--~---~~~~~------~~IiVtTPekld~l---~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
.+....... +....|.... . . ..... .+++++|.+.+... ....... ....+|+||+|.+
T Consensus 410 ~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~----~~~~~v~DEa~~i 484 (866)
T COG0553 410 EKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKI----EWDRVVLDEAHRI 484 (866)
T ss_pred hhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhc----eeeeeehhhHHHH
Confidence 666654443 6777776641 1 1 11122 78999999987442 1111122 3679999999997
Q ss_pred CCC
Q 007492 581 NDD 583 (601)
Q Consensus 581 ~d~ 583 (601)
-..
T Consensus 485 kn~ 487 (866)
T COG0553 485 KND 487 (866)
T ss_pred hhh
Confidence 664
No 246
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.46 Score=53.57 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.8
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
-+|+++|.|+|||.+|.+-.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILA 59 (509)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46999999999999887633
No 247
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.30 E-value=0.41 Score=50.37 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCC--ceeEeccCCCchHHHHHHH
Q 007492 446 QSRIFQTVYYTNE--NILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 446 Q~~~i~~~l~~~~--n~lv~ApTGsGKT~va~l~ 477 (601)
..+.+..++..+. ++++++|+|+|||..+...
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 3444444554555 7999999999999987553
No 248
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.24 E-value=0.12 Score=52.89 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 444 RIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 444 ~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
....+.+..++..+.++++++|||||||... -+++..+.. ...++++|-...++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~---------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPP---------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHT---------TTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhccc---------cccceEEeccccce
Confidence 3444455555556889999999999999885 445555543 13566666555544
No 249
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.20 E-value=0.18 Score=55.69 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHhcC-CceeEeccCCCchHHHHHHHHHHHHhh
Q 007492 442 LNRIQSRIFQTVYYTN-ENILVCAPTGAGKTNIAMISILHEIGQ 484 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~-~n~lv~ApTGsGKT~va~l~il~~l~~ 484 (601)
+++.|...+..+++.. .=+||.+|||||||.. |.++++.+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 3678888887777554 4568899999999988 6667776654
No 250
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.19 E-value=0.15 Score=57.01 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHh----c----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 444 RIQSRIFQTVYY----T----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 444 ~iQ~~~i~~~l~----~----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
|+|.-++-.++. + -+.+++.-|=|.|||......++..+.-. ...+..++++|+++.-|..++..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~------g~~~~~i~~~A~~~~QA~~~f~~~ 74 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD------GEPGAEIYCAANTRDQAKIVFDEA 74 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC------CccCceEEEEeCCHHHHHHHHHHH
Confidence 456655555551 1 23578888999999988766555544321 134678999999999999999988
Q ss_pred HhhcCC
Q 007492 516 SSRLSP 521 (601)
Q Consensus 516 ~~~l~~ 521 (601)
...+..
T Consensus 75 ~~~i~~ 80 (477)
T PF03354_consen 75 KKMIEA 80 (477)
T ss_pred HHHHHh
Confidence 887754
No 251
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.08 E-value=0.067 Score=55.32 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
..-+||.+|||||||.+ +.+|+..+-++...-.+.-..+.=.+-.+-|.|++|-
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QR 178 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQR 178 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHH
Confidence 55789999999999877 4456666655432111111122222334566777764
No 252
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.07 E-value=0.91 Score=58.98 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.|++-|..++..++.+ +.-.+|.++.|+|||.+.- .++..+ + ..+.+|+.++||-.-+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~-~--------~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLA-S--------EQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHH-H--------hcCCeEEEEeCCHHHHHHHHHH
Confidence 6899999999998854 3566889999999997732 233322 2 2478999999998877665543
No 253
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.02 E-value=0.66 Score=50.14 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=33.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|.-+++.+++|+|||..++-.+.. +.. .+.+++|+.-.. -..|+..+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~-~a~---------~g~~VlYvs~EE-s~~qi~~Ra~ 130 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR-LAK---------RGGKVLYVSGEE-SPEQIKLRAD 130 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHh---------cCCeEEEEECCc-CHHHHHHHHH
Confidence 3678899999999999986654433 322 346899997543 3455554443
No 254
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.02 E-value=0.17 Score=54.52 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=46.2
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeC
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTG 531 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~G 531 (601)
+..+..+++++|||+|||.+...-+...+..+ +..++.++. +.|.=+.++...|.+.+ |+.+.....
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~--------G~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~~~~~ 202 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRF--------GASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVHAVKD 202 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc--------CCCeEEEEecccccccHHHHHHHHHHHc---CCceEecCC
Confidence 34688999999999999998655333322221 123454443 23333555555555543 455544333
Q ss_pred CCccch--hhc-CCccEEEEChhh
Q 007492 532 DMQLSR--NEL-EETQMIVTTPEK 552 (601)
Q Consensus 532 d~~~~~--~~~-~~~~IiVtTPek 552 (601)
...+.. ... ..--|+|=||++
T Consensus 203 ~~~l~~~l~~l~~~DlVLIDTaG~ 226 (374)
T PRK14722 203 GGDLQLALAELRNKHMVLIDTIGM 226 (374)
T ss_pred cccHHHHHHHhcCCCEEEEcCCCC
Confidence 222211 111 223466677765
No 255
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.94 E-value=0.24 Score=54.53 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=32.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~ 518 (601)
.++.+++.+|||+|||.+..--+...... ..+.++.+|. |.|.-+.++...+.+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~--------~~g~~V~li~~D~~r~~a~eqL~~~a~~ 276 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALL--------YGKKKVALITLDTYRIGAVEQLKTYAKI 276 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEECCccHHHHHHHHHHHHHH
Confidence 46789999999999998765433322101 1345666555 4454444555544443
No 256
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.93 E-value=0.17 Score=53.37 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.|.-++|++|+|||||..++-.+.+... .+.+++||..-.++-.+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~----------~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK----------AGGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------cCCcEEEEcccchhHHH
Confidence 4778899999999999998776665432 36788999777666554
No 257
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.83 E-value=0.23 Score=52.35 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
.+.++.+.|..-+..+...+.++++|+|||||||.. +.+++..+-
T Consensus 124 ~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip 168 (312)
T COG0630 124 EYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP 168 (312)
T ss_pred hcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC
Confidence 356788999988888888899999999999999976 444555443
No 258
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.82 E-value=0.51 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=19.4
Q ss_pred CCc-eeEeccCCCchHHHHHHHHHHHHh
Q 007492 457 NEN-ILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 457 ~~n-~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
... +|+++|.|+|||.++.. +.+.+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~-lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA-LAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH-HHHHHh
Confidence 345 99999999999998665 444443
No 259
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=0.48 Score=52.86 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=16.4
Q ss_pred ceeEeccCCCchHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~ 477 (601)
.+|+++|+|+|||.+|.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999998763
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.79 E-value=0.73 Score=51.01 Aligned_cols=47 Identities=15% Similarity=0.397 Sum_probs=29.8
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
..++++||+|+|||..+.. +.+.+... ..+.+++|+.. ..+..++..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~-------~~~~~v~yi~~-~~f~~~~~~ 177 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQN-------EPDLRVMYITS-EKFLNDLVD 177 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHh-------CCCCeEEEEEH-HHHHHHHHH
Confidence 4689999999999988643 44444431 13568888864 334444433
No 261
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.77 E-value=0.34 Score=55.06 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=88.3
Q ss_pred CCcHHHHHHH---HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIF---QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i---~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
+|-.+|.+-+ -.+|.+|-|.++.-.-|-|||.-.+-.+.+....|- --+--+||+|--.|- -++.++.+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~n-------IwGPFLVVtpaStL~-NWaqEisr 638 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHN-------IWGPFLVVTPASTLH-NWAQEISR 638 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhcc-------CCCceEEeehHHHHh-HHHHHHHH
Confidence 4556666644 345677999999999999999886554433333321 112356778876663 45666777
Q ss_pred hcCCCCcEEEEEeCCCccchh------------hcCCccEEEEChhhH--HH-HHccCCCCCccCCccEEEeccCcccCC
Q 007492 518 RLSPLNMIVRELTGDMQLSRN------------ELEETQMIVTTPEKW--DV-ITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~------------~~~~~~IiVtTPekl--d~-l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
++. .++|.-+.|+.+-.+- .....||+||+++.+ |. +.++ + .-.++|+|||..+-.
T Consensus 639 FlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk---v----KWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 639 FLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK---V----KWQYMILDEAQAIKS 709 (1185)
T ss_pred hCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh---h----hhhheehhHHHHhhh
Confidence 775 3578888887663321 234689999999874 21 2221 1 135899999999987
Q ss_pred CChHHHHHHHHH
Q 007492 583 DRGPVIEALVAR 594 (601)
Q Consensus 583 ~rg~~le~iv~r 594 (601)
.....+..+++-
T Consensus 710 SsS~RWKtLLsF 721 (1185)
T KOG0388|consen 710 SSSSRWKTLLSF 721 (1185)
T ss_pred hhhhHHHHHhhh
Confidence 666666666653
No 262
>PRK04328 hypothetical protein; Provisional
Probab=92.75 E-value=0.65 Score=47.23 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=36.5
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.|..++|.+|+|+|||..++-.+.+.+. .+-+++|++ +-+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 4788999999999999987765655443 356788887 444555566555543
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.71 E-value=0.54 Score=50.99 Aligned_cols=83 Identities=13% Similarity=0.240 Sum_probs=44.8
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDMQ 534 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~ 534 (601)
...+++++|||+|||..+..-... +.. .+.++.++. |.|.-+.++...+.. ..|+.+........
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~---------~GkkVglI~aDt~RiaAvEQLk~yae---~lgipv~v~~d~~~ 307 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHG---------KKKTVGFITTDHSRIGTVQQLQDYVK---TIGFEVIAVRDEAA 307 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHH---------cCCcEEEEecCCcchHHHHHHHHHhh---hcCCcEEecCCHHH
Confidence 468899999999999886554333 222 345555554 455444444444433 34555543322222
Q ss_pred cchh--hcC----CccEEEEChhh
Q 007492 535 LSRN--ELE----ETQMIVTTPEK 552 (601)
Q Consensus 535 ~~~~--~~~----~~~IiVtTPek 552 (601)
+... ... ---|+|=||++
T Consensus 308 L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 308 MTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHHHHHhccCCCEEEEeCccc
Confidence 2111 111 13488889987
No 264
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=92.71 E-value=0.26 Score=57.93 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHH---HHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQT---VYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~---~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
++.++|..-+.- +|+++-|-++.--+|-|||+.-+--|. .++.+.. ...--+||||+-.|++= ..+|.+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLit-YLmE~K~------~~GP~LvivPlstL~NW-~~Ef~k 465 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLIT-YLMEHKQ------MQGPFLIIVPLSTLVNW-SSEFPK 465 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHH-HHHHHcc------cCCCeEEeccccccCCc-hhhccc
Confidence 788888887644 455566888899999999987433332 3333321 22335778899888762 233433
Q ss_pred hcCCCCcEEEEEeCCCccch----h-hcCCccEEEEChhhHHHHHccCCCCCccCC--ccEEEeccCcccCC
Q 007492 518 RLSPLNMIVRELTGDMQLSR----N-ELEETQMIVTTPEKWDVITRKSSDMSLSML--VKLLIIDEVHLLND 582 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~----~-~~~~~~IiVtTPekld~l~r~~~~~~~~~~--v~llIiDEaH~l~d 582 (601)
.. ..+....++|.....+ + ...+.+|++||++.+ +. +..+... -.++||||-|+|-.
T Consensus 466 Wa--PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi--ik----dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 466 WA--PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI--IK----DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cc--cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh--cC----CHHHHhccCCcceeecccccccc
Confidence 22 2455666677544321 1 236799999999985 11 1112212 24899999999975
No 265
>PRK12377 putative replication protein; Provisional
Probab=92.70 E-value=0.38 Score=49.07 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=32.1
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..++++++|+|+|||..+.. +.+.+.. .+..++|+ +..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~---------~g~~v~~i-~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA---------KGRSVIVV-TVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---------cCCCeEEE-EHHHHHHHHHHHH
Confidence 46899999999999988655 4444433 24455444 5567777765543
No 266
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.64 Score=53.40 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHHhcCC---ceeEeccCCCchHHHHHHHH
Q 007492 449 IFQTVYYTNE---NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 449 ~i~~~l~~~~---n~lv~ApTGsGKT~va~l~i 478 (601)
.+..++.+++ -+|+++|.|.|||.++.+-.
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 3444444443 46999999999999987733
No 267
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.66 E-value=0.22 Score=52.98 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 447 SRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 447 ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
...+..+...+.|++||+|||||||... -+++..+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll-~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFT-NAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhC
Confidence 3455666667899999999999999874 3455544
No 268
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.61 E-value=1.9 Score=49.59 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=71.9
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCC--CcEEEEEeCCC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPL--NMIVRELTGDM 533 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~--~i~V~~l~Gd~ 533 (601)
..+-.+++.|=-.|||.+.. +++..+... ..+.+|+|+||.+.-++.+++++..++... +-.+....| .
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s-------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALAT-------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHh-------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 46778899999999999866 454433321 258899999999999999999999887643 212322334 2
Q ss_pred ccchhhcCC--ccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 534 QLSRNELEE--TQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 534 ~~~~~~~~~--~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
.+.-.-..+ ..|..++- ...++. .. +.++++|||||+-+-+ .++..|+
T Consensus 324 ~I~i~f~nG~kstI~FaSa-----rntNsi-RG--qtfDLLIVDEAqFIk~---~al~~il 373 (738)
T PHA03368 324 TISFSFPDGSRSTIVFASS-----HNTNGI-RG--QDFNLLFVDEANFIRP---DAVQTIM 373 (738)
T ss_pred EEEEEecCCCccEEEEEec-----cCCCCc-cC--CcccEEEEechhhCCH---HHHHHHH
Confidence 221010111 13333321 111111 11 2488999999999985 5666665
No 269
>PRK08116 hypothetical protein; Validated
Probab=92.54 E-value=0.47 Score=48.91 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=32.0
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..+++++|+|+|||..+.. +.+.+.. .+..++|+ +...|..++...|
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~---------~~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIE---------KGVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHH---------cCCeEEEE-EHHHHHHHHHHHH
Confidence 3599999999999998764 6666654 24455555 5566766665443
No 270
>PRK10436 hypothetical protein; Provisional
Probab=92.53 E-value=0.26 Score=54.72 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHh-cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 442 LNRIQSRIFQTVYY-TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 442 l~~iQ~~~i~~~l~-~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+.+-|.+.|..++. .+..+||++|||||||.+. .+++..+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 45667777766653 4668999999999999874 44566554
No 271
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.51 E-value=1.6 Score=50.87 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCcHHHHHHHHHHHhcCC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 441 SLNRIQSRIFQTVYYTNE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
....-|.+.|..++..+. -+++.|.-|-|||.++-+++ ..+... ....+|++.+|+++=++.+..-..+.+
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~-------~~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARL-------AGSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHh-------cCCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 344445556666665544 67889999999999988777 333332 114699999999999999888877777
Q ss_pred CCCCcEEEEEeCC-CccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHHh
Q 007492 520 SPLNMIVRELTGD-MQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLR 597 (601)
Q Consensus 520 ~~~~i~V~~l~Gd-~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~r 597 (601)
..+|.+-...... .......-....|=.-+|..- .. .-++||||||=.|. =|.++.++.+..|
T Consensus 286 ~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a-----------~~-~~DllvVDEAAaIp---lplL~~l~~~~~r 349 (758)
T COG1444 286 EFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDA-----------QE-EADLLVVDEAAAIP---LPLLHKLLRRFPR 349 (758)
T ss_pred HHhCCccccccccccceeeecCCceeEEeeCcchh-----------cc-cCCEEEEehhhcCC---hHHHHHHHhhcCc
Confidence 6666442211111 111111111223444444431 11 15799999999887 4777777766443
No 272
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.43 E-value=0.2 Score=57.12 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=16.5
Q ss_pred eeEeccCCCchHHHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~i 478 (601)
+|+++|.|+|||.++.+-+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999987744
No 273
>PRK09354 recA recombinase A; Provisional
Probab=92.42 E-value=0.22 Score=53.11 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=35.7
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.|.-+.|++|+|||||..++..+.+... .+.+++||..-.++-.+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~----------~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK----------AGGTAAFIDAEHALDPV 103 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------cCCcEEEECCccchHHH
Confidence 4678899999999999998877666442 36789999988777653
No 274
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.40 E-value=0.24 Score=58.60 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.1
Q ss_pred eeEeccCCCchHHHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~i 478 (601)
+|+++|.|+|||.++.+..
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999987633
No 275
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.34 E-value=0.55 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=17.6
Q ss_pred ceeEeccCCCchHHHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l 482 (601)
-+|+++|.|+|||.++.+ +.+.+
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 359999999999999765 34434
No 276
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.33 E-value=0.32 Score=50.05 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHh-cCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 442 LNRIQSRIFQTVYY-TNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 442 l~~iQ~~~i~~~l~-~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
+.+-|.+.|..++. .+..++|++|||||||... .+++..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 45667777766654 3457899999999999875 3344544
No 277
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.32 E-value=0.18 Score=53.27 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.|.-+.|++|+|||||..++-.+.+... .+.+++||.+-.++-.+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~----------~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK----------LGGTVAFIDAEHALDPV 98 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------cCCCEEEECccccHHHH
Confidence 4678899999999999988776665432 36789999987776654
No 278
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.72 Score=53.03 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.8
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
-+|+++|.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35999999999999987743
No 279
>PRK05973 replicative DNA helicase; Provisional
Probab=92.28 E-value=0.72 Score=46.68 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=36.8
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.|.-++|.|++|+|||..++--+.+... .+.+++|++-- +=..|+..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~----------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK----------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh----------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 5788899999999999988765555432 35678888533 3356777776554
No 280
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.23 E-value=0.93 Score=51.93 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=20.7
Q ss_pred HHHHHHHhcC---CceeEeccCCCchHHHHHHH
Q 007492 448 RIFQTVYYTN---ENILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 448 ~~i~~~l~~~---~n~lv~ApTGsGKT~va~l~ 477 (601)
+.+..++.++ +.+|+++|.|+|||.++.+-
T Consensus 26 ~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~l 58 (576)
T PRK14965 26 RTLQNAIDTGRVAHAFLFTGARGVGKTSTARIL 58 (576)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3344444343 34589999999999998763
No 281
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.17 E-value=0.38 Score=52.85 Aligned_cols=88 Identities=22% Similarity=0.371 Sum_probs=58.7
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCC-------------CcE-------E-------------EEEeCCC--------
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPL-------------NMI-------V-------------RELTGDM-------- 533 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~-------------~i~-------V-------------~~l~Gd~-------- 533 (601)
.++||||+|+|.-|-+++..+-+++... |+. . ..+.|+.
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5899999999999999998887766541 100 0 0001110
Q ss_pred ccchh------hcCCccEEEEChhhHHHHHc----cCCCCCccCCccEEEeccCcccCC
Q 007492 534 QLSRN------ELEETQMIVTTPEKWDVITR----KSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 534 ~~~~~------~~~~~~IiVtTPekld~l~r----~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.+++. ..-.++||||+|=-|..+.. +..+..+...+.++|||.+|.|.=
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M 175 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM 175 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH
Confidence 01111 11279999999988855444 345666777899999999999873
No 282
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.10 E-value=0.63 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.1
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
..+|+++|.|+|||.++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999987643
No 283
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.07 E-value=0.3 Score=55.75 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHh-cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 442 LNRIQSRIFQTVYY-TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 442 l~~iQ~~~i~~~l~-~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+.+-|.+.|..++. ....+|+++|||||||.+. .+++..+.
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 35667777766654 3568899999999999884 45666553
No 284
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.07 E-value=0.59 Score=47.51 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=29.7
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
..+++++|+|+|||..+.. +.+.+.. .+..++|+ +...|...+...
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~---------~g~~v~~i-t~~~l~~~l~~~ 145 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLL---------RGKSVLII-TVADIMSAMKDT 145 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHh---------cCCeEEEE-EHHHHHHHHHHH
Confidence 4799999999999988664 4444433 34566666 455555544433
No 285
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.06 E-value=1 Score=51.61 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHhcC---CceeEeccCCCchHHHHHHHHH
Q 007492 448 RIFQTVYYTN---ENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 448 ~~i~~~l~~~---~n~lv~ApTGsGKT~va~l~il 479 (601)
+.|..++.++ ..+|+++|.|+|||.++.+-+-
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3444444443 4678999999999999877443
No 286
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.02 E-value=0.67 Score=49.04 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCceeEeccCCCchHHHHHH
Q 007492 447 SRIFQTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 447 ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
...+-.++..++++++.+|+|+|||..+..
T Consensus 54 ~~~vl~~l~~~~~ilL~G~pGtGKTtla~~ 83 (327)
T TIGR01650 54 TKAICAGFAYDRRVMVQGYHGTGKSTHIEQ 83 (327)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChHHHHHHH
Confidence 334445555688999999999999988654
No 287
>PLN03025 replication factor C subunit; Provisional
Probab=91.99 E-value=0.86 Score=48.05 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=17.1
Q ss_pred CceeEeccCCCchHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~ 477 (601)
.++++++|+|+|||..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999887653
No 288
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=0.98 Score=48.63 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.1
Q ss_pred ceeEeccCCCchHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~ 477 (601)
.+|+++|.|+|||.++...
T Consensus 40 ~~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLL 58 (363)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 4689999999999987663
No 289
>PF12846 AAA_10: AAA-like domain
Probab=91.84 E-value=0.25 Score=50.60 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=20.0
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
+.+++|+|+||||||..+...+.+.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999988774444443
No 290
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=1.3 Score=51.17 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=17.6
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
..+|+++|.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 467999999999999987643
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.70 E-value=0.41 Score=47.98 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=35.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|.-+++.+|+|+|||..+...+...+. .+.+++|+.=-.. ..++.+.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~----------~g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK----------QGKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh----------CCCEEEEEEcCCC-HHHHHHHHHH
Confidence 4778899999999999987665554332 3668888875433 3556565554
No 292
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.69 E-value=0.41 Score=56.90 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=17.9
Q ss_pred ceeEeccCCCchHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~ 480 (601)
-+|+++|.|+|||.++.+..-.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998774433
No 293
>PRK09183 transposase/IS protein; Provisional
Probab=91.67 E-value=0.62 Score=47.76 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=30.9
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
..+.++++.+|+|+|||..+...... ... .+.+++|+ +..+|..++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~-a~~---------~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYE-AVR---------AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHH-HHH---------cCCeEEEE-eHHHHHHHH
Confidence 46899999999999999887654322 222 35567666 445666544
No 294
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.55 E-value=0.55 Score=56.66 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=87.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcc--------cCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEE
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFR--------DGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVR 527 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~--------~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~ 527 (601)
.|..++..---|.|||..-+...+........ .|.-.....-.|||+|. ++..|+..++.+-.... ++|.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 36677777778999999877766655322211 12222234567999997 77789999888776654 8999
Q ss_pred EEeCCCc---cchhhcCCccEEEEChhhH--HHHHc-cC-CCC---------CccCC---cc--EEEeccCcccCCCChH
Q 007492 528 ELTGDMQ---LSRNELEETQMIVTTPEKW--DVITR-KS-SDM---------SLSML---VK--LLIIDEVHLLNDDRGP 586 (601)
Q Consensus 528 ~l~Gd~~---~~~~~~~~~~IiVtTPekl--d~l~r-~~-~~~---------~~~~~---v~--llIiDEaH~l~d~rg~ 586 (601)
.+.|-.. +.+.++..++|||||+..+ ++... .. ... .+... |- -||+|||.++-. -..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-ssS 529 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-SSS 529 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-hHH
Confidence 8888433 3346677899999999986 22221 11 111 11100 11 479999999875 344
Q ss_pred HHHHHHHHHHh
Q 007492 587 VIEALVARTLR 597 (601)
Q Consensus 587 ~le~iv~r~~r 597 (601)
....++.|+++
T Consensus 530 ~~a~M~~rL~~ 540 (1394)
T KOG0298|consen 530 AAAEMVRRLHA 540 (1394)
T ss_pred HHHHHHHHhhh
Confidence 44455555543
No 295
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.53 E-value=2.1 Score=44.89 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=53.4
Q ss_pred eEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH----HHHHHhhcCC-CCcEEEEEeCCCcc
Q 007492 461 LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV----TRTFSSRLSP-LNMIVRELTGDMQL 535 (601)
Q Consensus 461 lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~----~~~~~~~l~~-~~i~V~~l~Gd~~~ 535 (601)
++.+|.|+|||.+..+.++..+... ++.+.+|++|+..-+... .......... +.+..... .+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR--------PPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEW-NDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS--------SS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE--SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC--------CCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccC-CCCcE
Confidence 5789999999999887777766542 333445555666665553 2233333333 22222211 11111
Q ss_pred chhhcCCccEEEEChh---hHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 536 SRNELEETQMIVTTPE---KWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 536 ~~~~~~~~~IiVtTPe---kld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
.- .++..|.+.+-. ..+.+.. ....++|+||+-.+.+ ..+..++.++
T Consensus 72 ~~--~nG~~i~~~~~~~~~~~~~~~G--------~~~~~i~iDE~~~~~~---~~~~~~~~~~ 121 (384)
T PF03237_consen 72 IL--PNGSRIQFRGADSPDSGDNIRG--------FEYDLIIIDEAAKVPD---DAFSELIRRL 121 (384)
T ss_dssp EE--TTS-EEEEES-----SHHHHHT--------S--SEEEEESGGGSTT---HHHHHHHHHH
T ss_pred Ee--cCceEEEEeccccccccccccc--------cccceeeeeecccCch---HHHHHHHHhh
Confidence 11 234556555533 2333332 1367999999998875 3344444443
No 296
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.48 E-value=0.32 Score=54.49 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHhcCC-ceeEeccCCCchHHHHHHHHHHHHh
Q 007492 442 LNRIQSRIFQTVYYTNE-NILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~~-n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+.+-|.+.|..++.... -++|++|||||||... .++++.+.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 46777777777665433 5789999999999885 33455553
No 297
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.45 E-value=0.95 Score=51.26 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.6
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
-+|+++|.|+|||.++.+-+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999887633
No 298
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.23 E-value=1.3 Score=51.01 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=22.5
Q ss_pred HHHHHHHhcC---CceeEeccCCCchHHHHHHHHH
Q 007492 448 RIFQTVYYTN---ENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 448 ~~i~~~l~~~---~n~lv~ApTGsGKT~va~l~il 479 (601)
+.+..++..+ +.+|+++|.|.|||.++.+-+-
T Consensus 34 ~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 34 RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344444444 3689999999999999877443
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.17 E-value=0.8 Score=49.49 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=45.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDM 533 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~ 533 (601)
.++.+++++|||+|||.++.--+.. +.. .+.++.+|+ |.|.=|.++. ..+....++.+.......
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~-l~~---------~g~~V~lItaDtyR~gAveQL---k~yae~lgvpv~~~~dp~ 271 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ-LLK---------QNRTVGFITTDTFRSGAVEQF---QGYADKLDVELIVATSPA 271 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH---------cCCeEEEEeCCccCccHHHHH---HHHhhcCCCCEEecCCHH
Confidence 4778899999999999876543333 222 244565555 5555444443 333444555544322111
Q ss_pred ccch--hhc---CC-ccEEEEChhh
Q 007492 534 QLSR--NEL---EE-TQMIVTTPEK 552 (601)
Q Consensus 534 ~~~~--~~~---~~-~~IiVtTPek 552 (601)
.+.. ... .+ -.|+|=||++
T Consensus 272 dL~~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 272 ELEEAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCC
Confidence 1111 001 12 3489999998
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.12 E-value=1.3 Score=45.77 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDMQ 534 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~ 534 (601)
..-+++++|+|+|||.++.--+.. +.. .+.+++++. +.|.-+.++...|.++. |+.+........
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~-l~~---------~g~~V~li~~D~~r~~a~~ql~~~~~~~---~i~~~~~~~~~d 138 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANK-LKK---------QGKSVLLAAGDTFRAAAIEQLEEWAKRL---GVDVIKQKEGAD 138 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHh---------cCCEEEEEeCCCCCHHHHHHHHHHHHhC---CeEEEeCCCCCC
Confidence 456778899999999876543332 222 356777776 56666666666666554 444332111111
Q ss_pred cch--------hhcCCcc-EEEEChhhH
Q 007492 535 LSR--------NELEETQ-MIVTTPEKW 553 (601)
Q Consensus 535 ~~~--------~~~~~~~-IiVtTPekl 553 (601)
... ....+.+ |||=||++.
T Consensus 139 p~~~~~~~l~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 139 PAAVAFDAIQKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 100 0123344 899999874
No 301
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.11 E-value=0.32 Score=60.06 Aligned_cols=65 Identities=29% Similarity=0.297 Sum_probs=52.4
Q ss_pred HHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC
Q 007492 452 TVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521 (601)
Q Consensus 452 ~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~ 521 (601)
.++..+.+++|.|..|||||.+-..-+++.+... | ...--++++|+.|++-+.+|..++..++..
T Consensus 11 ~~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~---~--~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 11 LASPPGQSVLVEASAGTGKTFVLAERVLRLLLEG---G--PLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred hhcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhc---C--CCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999888888887762 1 123458999999999999999998887754
No 302
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.11 E-value=0.44 Score=51.45 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=21.9
Q ss_pred HHhcCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 453 VYYTNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 453 ~l~~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+...+..++|++|||||||... .++++.+.
T Consensus 145 l~~~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 145 LLPAAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred HHhcCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3345678999999999999874 44555553
No 303
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.05 E-value=0.38 Score=53.64 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=46.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDM 533 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~ 533 (601)
.+.-+++++|||+|||.+...-.-..... .+..++.+|. +.|.=+.++...|.+++ |+.+.......
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--------~G~~kV~LI~~Dt~RigA~EQLr~~Aeil---GVpv~~~~~~~ 323 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMR--------HGASKVALLTTDSYRIGGHEQLRIYGKIL---GVPVHAVKDAA 323 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHh--------cCCCeEEEEeCCccchhHHHHHHHHHHHh---CCCeeccCCch
Confidence 45678899999999998854433222122 1122444443 44555667677766654 34333222211
Q ss_pred cc--chhhc-CCccEEEEChhh
Q 007492 534 QL--SRNEL-EETQMIVTTPEK 552 (601)
Q Consensus 534 ~~--~~~~~-~~~~IiVtTPek 552 (601)
.. ....+ ..-.++|-|+++
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr 345 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGM 345 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCc
Confidence 11 11112 234688999985
No 304
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.87 E-value=0.46 Score=50.40 Aligned_cols=61 Identities=20% Similarity=0.416 Sum_probs=40.7
Q ss_pred HHHHHHHHhcC--CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 447 SRIFQTVYYTN--ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 447 ~~~i~~~l~~~--~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.-.+..+++++ ..+++.+|.|+|||..|-+.+-.. .....+.|=+..|.+-++++..-|.+
T Consensus 150 ~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts----------k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 150 DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS----------KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc----------CCCceEEEEEeccccchHHHHHHHHH
Confidence 34455555555 489999999999999876643321 12456777777888777776666543
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.78 E-value=0.65 Score=48.23 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=32.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~ 518 (601)
.+..+++++|||+|||.+..--+......+ .+.++.+|. |.+.-+.++...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~--------g~~~V~li~~D~~r~~a~eql~~~~~~ 249 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH--------GNKKVALITTDTYRIGAVEQLKTYAKI 249 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc--------CCCeEEEEECCccchhHHHHHHHHHHH
Confidence 467889999999999988654332221110 124555554 4455555555555543
No 306
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.65 E-value=0.73 Score=53.44 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=72.6
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE 539 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~ 539 (601)
.++.---|-|||+..+..++..=..+.. ..-.......++|||+ ++..|....+.+..++..+.|..++| ......+
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~-~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~kd~~e 231 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKE-EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTKDKSE 231 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcc-hhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-cccccch
Confidence 3555567999999876655543222110 0001134456777777 66667777776666666788888888 4444566
Q ss_pred cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 540 LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 540 ~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
+...+|++|||..|.. ...... .--.+|+||+|.+-.
T Consensus 232 l~~~dVVltTy~il~~----~~l~~i--~w~Riildea~~ikn 268 (674)
T KOG1001|consen 232 LNSYDVVLTTYDILKN----SPLVKI--KWLRIVLDEAHTIKN 268 (674)
T ss_pred hcCCceEEeeHHHhhc----ccccce--eEEEEEeccccccCC
Confidence 7788999999998853 111111 124689999999976
No 307
>PRK14974 cell division protein FtsY; Provisional
Probab=90.64 E-value=2.7 Score=44.85 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=32.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc--ChhHHHHHHHHHHhhcCCCCcEE
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP--MKALAAEVTRTFSSRLSPLNMIV 526 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP--traLa~Q~~~~~~~~l~~~~i~V 526 (601)
.-+++++|+|+|||.+..-.+ ..+.. .+.+++++.. .|.-+.++...+... +|+.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~---------~g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v 198 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK---------NGFSVVIAAGDTFRAGAIEQLEEHAER---LGVKV 198 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH---------cCCeEEEecCCcCcHHHHHHHHHHHHH---cCCce
Confidence 457889999999998754322 22332 3567777763 344444444444433 45544
No 308
>PRK04195 replication factor C large subunit; Provisional
Probab=90.61 E-value=1.8 Score=48.46 Aligned_cols=20 Identities=35% Similarity=0.683 Sum_probs=17.0
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+|+++|+|+|||..+-.
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999987654
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.54 E-value=0.49 Score=47.08 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=36.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.|..++|.+|+|+|||..++--+.+.+.+ .+-+++|++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------~ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---------FGEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---------HT--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------cCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 47889999999999999877666555432 156888887 445556666666643
No 310
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=2.3 Score=46.34 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=21.3
Q ss_pred HHHHHHhcC---CceeEeccCCCchHHHHHHHH
Q 007492 449 IFQTVYYTN---ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 449 ~i~~~l~~~---~n~lv~ApTGsGKT~va~l~i 478 (601)
.+..++.+| ..+|+++|.|+|||.+|.+..
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHH
Confidence 344444444 348899999999999987643
No 311
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.47 E-value=1.4 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.8
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
.+|+++|.|+|||.++.+-+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999987644
No 312
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.31 E-value=1.7 Score=49.79 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=29.8
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.++|++++|+|||..+.. +.+.+... ..+.+++|+. ...++.++...
T Consensus 316 pL~LyG~sGsGKTHLL~A-Ia~~a~~~-------~~g~~V~Yit-aeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHA-IGHYARRL-------YPGTRVRYVS-SEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHHH-HHHHHHHh-------CCCCeEEEee-HHHHHHHHHHH
Confidence 489999999999987543 44444321 1356787775 45555554443
No 313
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.30 E-value=0.25 Score=53.55 Aligned_cols=46 Identities=24% Similarity=0.145 Sum_probs=35.0
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
+++|+||||||||..+++|-+.. ....+|++=|--++........+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~ 46 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRR 46 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHH
Confidence 47999999999999998876542 13578888899888876555444
No 314
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.22 E-value=0.6 Score=49.91 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=20.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
.+..++|++|||||||... ..++..+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhC
Confidence 4689999999999999885 33555443
No 315
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.19 E-value=0.6 Score=46.22 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=31.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
.|.-+.|.+|+|+|||..++..+...+.. +.+.....+++|+..-..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~----~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP----GELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc----cccCCCcceEEEEecCCC
Confidence 46788999999999999987655554322 111112378899887543
No 316
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.17 Score=52.71 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=17.3
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
...|+|+.+|||||||+.|-
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 46799999999999998763
No 317
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.13 E-value=1 Score=49.54 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=47.5
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.-+++++|+|+|||.++.--+. .+.. .+.++++|+ |.|.-|.++.+.+.+. .++.+.........
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l~~---------~G~kV~lV~~D~~R~aA~eQLk~~a~~---~~vp~~~~~~~~dp 167 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YYQR---------KGFKPCLVCADTFRAGAFDQLKQNATK---ARIPFYGSYTESDP 167 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---------CCCCEEEEcCcccchhHHHHHHHHhhc---cCCeEEeecCCCCH
Confidence 4578899999999877543222 2222 355777666 5677666666666554 45555544332221
Q ss_pred -c--hh-----hcCC-ccEEEEChhhH
Q 007492 536 -S--RN-----ELEE-TQMIVTTPEKW 553 (601)
Q Consensus 536 -~--~~-----~~~~-~~IiVtTPekl 553 (601)
. .. ...+ -.|||=||++.
T Consensus 168 ~~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 168 VKIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 1 11 1112 34889999984
No 318
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.06 E-value=1.3 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=18.4
Q ss_pred CceeEeccCCCchHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~ 480 (601)
+-+|++||.|+|||.+|..-+-.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999998774433
No 319
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.04 E-value=0.87 Score=43.78 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=36.9
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|.-+++.||+|+|||...+-.+.+.+.....-|.....+.+++|+..--. ..++.+++...+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 467789999999999999766555554321111111225678999976655 5677777766554
No 320
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.86 E-value=0.55 Score=50.15 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va 474 (601)
.+++.+...+..+...+.|++++++||||||...
T Consensus 162 ~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 162 TFPPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 4667888888888877889999999999998764
No 321
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.69 E-value=0.48 Score=46.43 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=18.0
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHh
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
-++|++|||||||... ..++..+.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhh
Confidence 4789999999999885 33555543
No 322
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.68 E-value=1.5 Score=49.64 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=16.3
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
..|+++|.|+|||.++..-+
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LA 57 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFA 57 (535)
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 34899999999999876633
No 323
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.66 E-value=0.91 Score=44.53 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=34.4
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEE
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRE 528 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~ 528 (601)
-+++++|||+|||.+..=-..+. .. .+.++.+++ ..|.=|.++.+.+.+.+ |+.+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~-~~---------~~~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~ 61 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARL-KL---------KGKKVALISADTYRIGAVEQLKTYAEIL---GVPFYV 61 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-HH---------TT--EEEEEESTSSTHHHHHHHHHHHHH---TEEEEE
T ss_pred EEEEECCCCCchHhHHHHHHHHH-hh---------ccccceeecCCCCCccHHHHHHHHHHHh---ccccch
Confidence 36789999999998853322222 11 134454444 56777777777777765 455544
No 324
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.62 E-value=0.96 Score=49.66 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=59.3
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEE-EeCCC
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRE-LTGDM 533 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~-l~Gd~ 533 (601)
..|.-++|.|+||+|||..++-.+.+.... .+..++|++ +---..|+..++-.... |+.... ..|..
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~---------~g~~v~~fS-lEm~~~~l~~Rl~~~~~--~v~~~~~~~~~l 259 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALR---------EGKPVLFFS-LEMSAEQLGERLLASKS--GINTGNIRTGRF 259 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCcEEEEE-CCCCHHHHHHHHHHHHc--CCCHHHHhcCCC
Confidence 357888999999999999877655554322 355677775 33344455544433222 222211 12322
Q ss_pred ccc--------hhhcCCccEEEEChhh--HHHHHccCCCCCcc-CCccEEEeccCcccCC
Q 007492 534 QLS--------RNELEETQMIVTTPEK--WDVITRKSSDMSLS-MLVKLLIIDEVHLLND 582 (601)
Q Consensus 534 ~~~--------~~~~~~~~IiVtTPek--ld~l~r~~~~~~~~-~~v~llIiDEaH~l~d 582 (601)
... ...+.+..+.|.-+.. ++.+..+...+... ..+++||||=.|+|..
T Consensus 260 ~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 260 NDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 110 0112344555543322 33222211100000 1378999999999874
No 325
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.56 E-value=0.83 Score=48.55 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=32.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
.+.++++++|||+|||..+. +|.+.+.. .+..|+|+ +...|..++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~---------~g~~V~y~-t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD---------RGKSVIYR-TADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH---------CCCeEEEE-EHHHHHHHHHH
Confidence 35899999999999999654 35555543 35677776 44666665543
No 326
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.54 E-value=0.42 Score=53.11 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=37.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.+++++||||||||..+++|.+-. . ..-+|+.=|--+|.......+.+.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999887631 1 236888889988887766655543
No 327
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.51 E-value=1.5 Score=48.30 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=34.1
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
..|.-++|.|+||+|||..++-.+.+.... .+..++|++ +-.-..|+..++...
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~---------~g~~vl~~S-lEm~~~~i~~R~~~~ 246 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIK---------EGKPVAFFS-LEMSAEQLAMRMLSS 246 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh---------CCCeEEEEe-CcCCHHHHHHHHHHH
Confidence 357788999999999998876555443322 245677664 333445555555443
No 328
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.42 E-value=1.3 Score=42.79 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.4
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
..+|+++|+|.|||..+...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALA 35 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999876643
No 329
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.20 E-value=4.5 Score=40.61 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=33.9
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccC--CCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDG--YLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~--~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
-.++.||.|+|||..++-.++....-.-..| .....+.+|+|++--- =..++.+++.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHh
Confidence 3589999999999998765554321110011 1223467899998221 12344444444433
No 330
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.18 E-value=0.53 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCceeEeccCCCchHHHH
Q 007492 448 RIFQTVYYTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 448 ~~i~~~l~~~~n~lv~ApTGsGKT~va 474 (601)
..+..++..+.++++++|||||||...
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHH
Confidence 334555667899999999999999874
No 331
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=89.00 E-value=0.92 Score=54.71 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=32.8
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
.+.|++|+||||||||.....-+.+.+.. .+.+++++=|-++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li~q~~~~---------~~~~v~IiD~g~s 515 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLLMQVMAV---------HRPRLFIVEAGNS 515 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHHHHHHHh---------cCCEEEEEcCCCC
Confidence 47899999999999999876656555433 3578888888776
No 332
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.99 E-value=1.6 Score=45.59 Aligned_cols=18 Identities=39% Similarity=0.672 Sum_probs=14.2
Q ss_pred ceeE-eccCCCchHHHHHH
Q 007492 459 NILV-CAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv-~ApTGsGKT~va~l 476 (601)
++++ +||+|+|||..+..
T Consensus 44 ~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred eEEEeeCcCCCCHHHHHHH
Confidence 4555 89999999988554
No 333
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=88.93 E-value=0.79 Score=46.75 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCC-ccchhh----cCCccEEEEChhhH-HHHHccCCCCCcc
Q 007492 493 KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDM-QLSRNE----LEETQMIVTTPEKW-DVITRKSSDMSLS 566 (601)
Q Consensus 493 ~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~-~~~~~~----~~~~~IiVtTPekl-d~l~r~~~~~~~~ 566 (601)
.+.+.+|||++.=--|.++++.+..+-. -+..|..+.+-. .+..+. ...++|.||||+|+ ..+..+. +.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~--L~l- 199 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA--LSL- 199 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC--CCc-
Confidence 3567788888877678888887765421 122333333322 332221 24689999999997 5554433 333
Q ss_pred CCccEEEeccCcc
Q 007492 567 MLVKLLIIDEVHL 579 (601)
Q Consensus 567 ~~v~llIiDEaH~ 579 (601)
..+++||||--|+
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 3589999998766
No 334
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.92 E-value=0.38 Score=49.74 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=22.6
Q ss_pred HHHHHHhcCCceeEeccCCCchHHHHHH
Q 007492 449 IFQTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 449 ~i~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..++..+.++|+++|||+|||....-
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 4555667799999999999999987443
No 335
>PRK13764 ATPase; Provisional
Probab=88.90 E-value=0.77 Score=52.52 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHhcCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 451 ~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
..+.....++||++|||||||..+ -+++..+.
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 334445789999999999999865 33555443
No 336
>PRK05748 replicative DNA helicase; Provisional
Probab=88.75 E-value=1.3 Score=49.02 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEE-EeCCC
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRE-LTGDM 533 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~-l~Gd~ 533 (601)
..|.-++|.|+||+|||..++-.+.+.... .+..++|+ .+-.-..|+..++-..... +.... ..|..
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~---------~g~~v~~f-SlEms~~~l~~R~l~~~~~--v~~~~i~~~~l 268 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK---------TDKNVAIF-SLEMGAESLVMRMLCAEGN--IDAQRLRTGQL 268 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh---------CCCeEEEE-eCCCCHHHHHHHHHHHhcC--CCHHHhhcCCC
Confidence 357788999999999999877655443322 24456665 4444555666665433222 11111 12322
Q ss_pred ccch--------hhcCCccEEEE-Chhh-HHHHHccCCCCCcc-CCccEEEeccCcccC
Q 007492 534 QLSR--------NELEETQMIVT-TPEK-WDVITRKSSDMSLS-MLVKLLIIDEVHLLN 581 (601)
Q Consensus 534 ~~~~--------~~~~~~~IiVt-TPek-ld~l~r~~~~~~~~-~~v~llIiDEaH~l~ 581 (601)
.... ..+.+..+.|. +|.. ++.+..+...+.-. ..+++||||=.|+|.
T Consensus 269 ~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2111 11234455554 3332 22222111000000 147899999999995
No 337
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.69 E-value=1 Score=52.37 Aligned_cols=71 Identities=25% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.||+-|.+++.. ....++|.|..|||||.+..--+.+.+... . -....++.|+=|+-.|.+|..++.+.+.
T Consensus 2 ~Ln~~Q~~av~~---~~gp~lV~AGaGsGKT~vlt~Ria~li~~~----~--v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLH---PDGPLLVLAGAGSGKTRVLTERIAYLIAAG----G--VDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhc---CCCCeEEEECCCCCchhhHHHHHHHHHHcC----C--cChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 589999999865 367899999999999999777777766542 1 1234699999999999999999988764
No 338
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.59 E-value=3.1 Score=44.13 Aligned_cols=19 Identities=47% Similarity=0.712 Sum_probs=15.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
+.+|+++|.|+|||..+..
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999988655
No 339
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=88.51 E-value=1.1 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.0
Q ss_pred HhcCCceeEeccCCCchHHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l 476 (601)
+..+.|++..+|+|+|||.+|..
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHH
Confidence 45789999999999999988764
No 340
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=88.34 E-value=0.59 Score=47.84 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHhc----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 449 IFQTVYYT----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 449 ~i~~~l~~----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.+..++.. |.=.=|++|.|+|||..++-.++........ ...+.++|||--....-.+-...+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~----~g~~~~vvyidTe~~f~~~Rl~~i 92 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEI----GGLGGKVVYIDTEGTFSPERLQQI 92 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCT----TSSSSEEEEEESSSSS-HHHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhccccc----ccCCCceEEEeCCCCCCHHHHHHH
Confidence 45555532 3444579999999999877655554332111 124678999975555444333333
No 341
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.30 E-value=0.98 Score=45.40 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=35.3
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
..+..+++.+|+|+|||..++-.+...+ + .+.+++|++.. +-..+..+.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~---------~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q---------NGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h---------CCCcEEEEeCC-CCHHHHHHHHHH
Confidence 4578899999999999998655444432 2 35788999843 344555555543
No 342
>PRK06921 hypothetical protein; Provisional
Probab=88.23 E-value=1.1 Score=46.11 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
+.++++++|||+|||..+. +|.+.+.. ..+..++|+. ..++..++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~--------~~g~~v~y~~-~~~l~~~l~~ 163 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMR--------KKGVPVLYFP-FVEGFGDLKD 163 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhh--------hcCceEEEEE-HHHHHHHHHH
Confidence 6789999999999998764 35555543 1256777765 4455555543
No 343
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.21 E-value=0.77 Score=47.02 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=28.8
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
.|.-++|++|+|+|||..++-.+.+.+. .+.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------CCCcEEEEEe
Confidence 4778899999999999987765555432 3568888873
No 344
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.19 E-value=3.2 Score=44.15 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHHhcCC---ceeEeccCCCchHHHHHHHHHHHHhhhcccCCC-----------CCCCcEEEEEccCh-
Q 007492 441 SLNRIQSRIFQTVYYTNE---NILVCAPTGAGKTNIAMISILHEIGQHFRDGYL-----------HKDEFKIVYVAPMK- 505 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~---n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~-----------~~~~~kvl~laPtr- 505 (601)
.++|||...+..++..|+ -+|+++|.|.|||..+..-+-..+......+.. ....+-+.++.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 357889999988886543 588999999999988766444333322111100 11234677888852
Q ss_pred --h-HHHHHHHHHHhhcC----CCCcEEEEEeCCCccc
Q 007492 506 --A-LAAEVTRTFSSRLS----PLNMIVRELTGDMQLS 536 (601)
Q Consensus 506 --a-La~Q~~~~~~~~l~----~~~i~V~~l~Gd~~~~ 536 (601)
. -++|+.. +.+.+. .-+.+|..+..-..++
T Consensus 83 ~~~i~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~ 119 (328)
T PRK05707 83 DKTIKVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMN 119 (328)
T ss_pred CCCCCHHHHHH-HHHHHhhccccCCCeEEEECChhhCC
Confidence 2 2344333 333322 2356777776654444
No 345
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=88.15 E-value=0.62 Score=46.68 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.4
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA 502 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la 502 (601)
..|.-++|+||+|+|||..++-.+.+.... .+.+++|++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~---------~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK---------QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCceEEEe
Confidence 357788999999999998876655554433 266888887
No 346
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.13 E-value=1 Score=55.81 Aligned_cols=59 Identities=27% Similarity=0.329 Sum_probs=48.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSP 521 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~ 521 (601)
-..+++|.|+-|||||.+..--++..+.. | ....++++|+-|+.-|.+|..++...|..
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~----~---~~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLN----G---VPPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHc----C---CCCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988877777654 1 23468999999999999999988887753
No 347
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.07 E-value=0.6 Score=50.20 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=21.6
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
..+..++|++|||||||... -+++..+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 35789999999999999874 44555553
No 348
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.05 E-value=1.1 Score=44.71 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.|..+++.+|+|+|||..+...+.+.+. .+.+++|+.- .+.+.++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~----------~g~~~~~is~-e~~~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR----------DGDPVIYVTT-EESRESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEEEEc-cCCHHHHHHH
Confidence 5889999999999999887654544332 2457788864 3344555444
No 349
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.98 E-value=0.69 Score=50.24 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=20.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.|..++|.||+|+|||..+.. +.+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 588999999999999976444 44444
No 350
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.95 E-value=1.3 Score=50.55 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.5
Q ss_pred ceeEeccCCCchHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~ 477 (601)
-+|+++|.|.|||.++.+-
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998763
No 351
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.87 E-value=0.59 Score=53.62 Aligned_cols=57 Identities=21% Similarity=-0.003 Sum_probs=41.6
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL 529 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l 529 (601)
..+++++||||||||..+++|-+-.. +.-+|++=|--++........++ .|-+|..+
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vf 214 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREK----QGQKVFVW 214 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHH----CCCeEEEE
Confidence 46899999999999999999987531 34678888888888666554443 35455544
No 352
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.84 E-value=1.5 Score=45.28 Aligned_cols=19 Identities=42% Similarity=0.812 Sum_probs=16.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+|+.+|.|-|||..|.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4799999999999988776
No 353
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.71 E-value=4.4 Score=43.45 Aligned_cols=24 Identities=42% Similarity=0.740 Sum_probs=18.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
..+|+++|.|+|||..+... .+.+
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l-a~~l 63 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL-ARKI 63 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH-HHHh
Confidence 37899999999999876553 4444
No 354
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.44 E-value=0.97 Score=55.35 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=23.3
Q ss_pred cEEEeccCcccCCCChHHHHHHHHHHHhh
Q 007492 570 KLLIIDEVHLLNDDRGPVIEALVARTLRQ 598 (601)
Q Consensus 570 ~llIiDEaH~l~d~rg~~le~iv~r~~r~ 598 (601)
-+|||||.+-|....+..++.+|.|+.+.
T Consensus 1142 IVVIIDE~AdLm~~~~kevE~lI~rLAqk 1170 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVGKKVEELIARLAQK 1170 (1355)
T ss_pred EEEEEcChHHHHhhhhHHHHHHHHHHHHH
Confidence 37999999888776678888888887654
No 355
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.41 E-value=0.91 Score=43.46 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=33.8
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
++|.+|+|||||..+.--+.. .+.+++|++-.+++-.++..+..+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 589999999999987654332 245899999999987776666443
No 356
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.17 E-value=3.8 Score=42.60 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=16.3
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|+|+|||.++..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALA 57 (319)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3699999999999988654
No 357
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.11 E-value=0.94 Score=45.90 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHhcCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 452 TVYYTNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 452 ~~l~~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.++...-+++|+||+|||||+..+- ++..+
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~-lL~~~ 37 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKS-LLYYL 37 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHH-HHHhh
Confidence 3444456899999999999987433 44444
No 358
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.94 E-value=2.8 Score=49.01 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred HHHHHHhcC---CceeEeccCCCchHHHHHHHH
Q 007492 449 IFQTVYYTN---ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 449 ~i~~~l~~~---~n~lv~ApTGsGKT~va~l~i 478 (601)
.+..++..+ +-+|++||.|.|||.+|.+-+
T Consensus 29 ~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 29 TLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 444445443 246899999999999986643
No 359
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.71 E-value=2.6 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=17.8
Q ss_pred CceeEeccCCCchHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il 479 (601)
..+|++||.|+|||.++...+-
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999876443
No 360
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.62 E-value=0.93 Score=52.68 Aligned_cols=58 Identities=22% Similarity=0.144 Sum_probs=40.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL 529 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l 529 (601)
...+++++||||||||..+++|-+-. -...+|++=|--++.........+ .|-+|..+
T Consensus 138 ~~~hvlviApTgSGKgvg~VIPnLL~------------~~gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~F 195 (670)
T PRK13850 138 EQPHSLVVAPTRAGKGVGVVIPTLLT------------FKGSVIALDVKGELFELTSRARKA----SGDAVFKF 195 (670)
T ss_pred CCceEEEEecCCCCceeeehHhHHhc------------CCCCEEEEeCCchHHHHHHHHHHh----CCCEEEEe
Confidence 35699999999999999999987542 124678888888887765443332 35555544
No 361
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.56 E-value=3 Score=51.57 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=64.1
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
+.+++|++|+++-+..++..+.+.+. +++|..++|+++...+. ..+.+|+||| +++.+ +.++.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT----dIier-GIDIP--- 878 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCT----TIIET-GIDIP--- 878 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC----chhhc-ccccc---
Confidence 56899999999999999888887664 45788899998765432 1479999999 44554 44554
Q ss_pred CccEEEeccCcccCCCChHHHHHHHHHHHh
Q 007492 568 LVKLLIIDEVHLLNDDRGPVIEALVARTLR 597 (601)
Q Consensus 568 ~v~llIiDEaH~l~d~rg~~le~iv~r~~r 597 (601)
.+++||++.++++. -+.+-.++-|+-|
T Consensus 879 ~v~~VIi~~ad~fg---laq~~Qr~GRvGR 905 (1147)
T PRK10689 879 TANTIIIERADHFG---LAQLHQLRGRVGR 905 (1147)
T ss_pred cCCEEEEecCCCCC---HHHHHHHhhccCC
Confidence 58999999888654 1444454444433
No 362
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=86.55 E-value=3.6 Score=38.91 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=18.6
Q ss_pred CceeEeccCCCchHHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHE 481 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~ 481 (601)
..+|+++|.|+||+..+..-+-..
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999998876644443
No 363
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.52 E-value=1.7 Score=43.42 Aligned_cols=38 Identities=24% Similarity=0.536 Sum_probs=26.3
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
.+++++|+|+|||.. +-++.+.+.+. .++.+++|+...
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-------~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-------HPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-------CTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-------cccccceeecHH
Confidence 589999999999995 45555555432 246789988643
No 364
>PRK08760 replicative DNA helicase; Provisional
Probab=86.42 E-value=1.9 Score=48.26 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=58.0
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQ 534 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~ 534 (601)
..|.-++|.|+||+|||..++-.+.+.... .+..++|++ .-.-..|+..++..........- ...|...
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~---------~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~ 295 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIK---------SKKGVAVFS-MEMSASQLAMRLISSNGRINAQR-LRTGALE 295 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHh---------cCCceEEEe-ccCCHHHHHHHHHHhhCCCcHHH-HhcCCCC
Confidence 357778899999999999877655443222 244566664 33334566665544432221111 1123221
Q ss_pred cc--------hhhcCCccEEEEC-----hhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 535 LS--------RNELEETQMIVTT-----PEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 535 ~~--------~~~~~~~~IiVtT-----Pekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
.. ...+.+..+.|.- ++.+....++... ...+++||||=.++|.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~---~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR---EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEecHHhcC
Confidence 11 1122345565552 2232222222211 1247899999999985
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.40 E-value=1.7 Score=51.05 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=43.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc--ChhHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP--MKALAAEVTRTFSSRLSPLNMIVRELTGDM 533 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP--traLa~Q~~~~~~~~l~~~~i~V~~l~Gd~ 533 (601)
.+.-+.+++|||+|||.+...-....... .+..++.++.- .|.=+.++...+.+. +|+.+.......
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--------~G~kkV~lit~Dt~RigA~eQL~~~a~~---~gvpv~~~~~~~ 252 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAR--------EGADQLALLTTDSFRIGALEQLRIYGRI---LGVPVHAVKDAA 252 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHH--------cCCCeEEEecCcccchHHHHHHHHHHHh---CCCCccccCCHH
Confidence 35677899999999987754322222111 12235555543 343344545555444 355443322111
Q ss_pred ccch--hhcC-CccEEEEChhh
Q 007492 534 QLSR--NELE-ETQMIVTTPEK 552 (601)
Q Consensus 534 ~~~~--~~~~-~~~IiVtTPek 552 (601)
.+.. .... .-.|||=||++
T Consensus 253 ~l~~al~~~~~~D~VLIDTAGR 274 (767)
T PRK14723 253 DLRFALAALGDKHLVLIDTVGM 274 (767)
T ss_pred HHHHHHHHhcCCCEEEEeCCCC
Confidence 1110 1112 23589999996
No 366
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.35 E-value=1.8 Score=47.51 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSS 517 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~ 517 (601)
+.-+++++|||+|||.++.--+.+.... .+.++.++. +.|..+.++...+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~---------~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH---------MGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh---------cCCeEEEecccchhhhHHHHHHHHHH
Confidence 3457899999999999875544332222 244565555 556666665555543
No 367
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=86.23 E-value=1.3 Score=43.20 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=19.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
...+++|+++||||||.+....+...+.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 4559999999999999997665555444
No 368
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.20 E-value=2.6 Score=41.27 Aligned_cols=103 Identities=20% Similarity=0.308 Sum_probs=56.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCc-EEEEEeCCCccc
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNM-IVRELTGDMQLS 536 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i-~V~~l~Gd~~~~ 536 (601)
.=.++++|=+||||.- +|+++..+. ..+.++++..|-.. .|. +. .|..-.| ..
T Consensus 5 ~l~~i~gpM~SGKT~e----Ll~r~~~~~------~~g~~v~vfkp~iD----------~R~---~~~~V~Sr~G-~~-- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEE----LLRRARRYK------EAGMKVLVFKPAID----------TRY---GVGKVSSRIG-LS-- 58 (201)
T ss_pred EEEEEEccCcCcchHH----HHHHHHHHH------HcCCeEEEEecccc----------ccc---ccceeeeccC-Cc--
Confidence 3457899999999985 333333221 24567777766421 111 11 1111111 11
Q ss_pred hhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHH
Q 007492 537 RNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594 (601)
Q Consensus 537 ~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r 594 (601)
..+.++=.+.+.++.+........ +++|.||||+-+...-=.+++.+..+
T Consensus 59 ----~~A~~i~~~~~i~~~i~~~~~~~~----~~~v~IDEaQF~~~~~v~~l~~lad~ 108 (201)
T COG1435 59 ----SEAVVIPSDTDIFDEIAALHEKPP----VDCVLIDEAQFFDEELVYVLNELADR 108 (201)
T ss_pred ----ccceecCChHHHHHHHHhcccCCC----cCEEEEehhHhCCHHHHHHHHHHHhh
Confidence 124444444445677776543332 78999999999986444455555443
No 369
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.14 E-value=2.1 Score=49.55 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=37.9
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh--HHHHHHHHHHhhc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA--LAAEVTRTFSSRL 519 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra--La~Q~~~~~~~~l 519 (601)
..+++|.|+||+|||..+.+.+.+.+.. +..++++=|--. |...+...+++..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~----------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR----------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc----------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 5799999999999998876666665542 456777777754 6666666655543
No 370
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.07 E-value=0.96 Score=50.72 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=16.7
Q ss_pred ceeEeccCCCchHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il 479 (601)
=.+.++|-|.|||.++-+-+-
T Consensus 40 AYlfsG~RGvGKTt~Ari~Ak 60 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAK 60 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHH
Confidence 347899999999999876443
No 371
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.82 E-value=1.1 Score=43.75 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=29.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
.|.-++|++|+|+|||..++-.+.+... .+.+++|+.-..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~----------~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR----------QGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEECCC
Confidence 3667899999999999998765554332 356888887653
No 372
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=85.75 E-value=3.1 Score=45.14 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.6
Q ss_pred cCCceeEeccCCCchHHHH
Q 007492 456 TNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va 474 (601)
.++.+.+.+|||.|||.+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred cCcEEEEECCCCCcHHHHH
Confidence 3789999999999998873
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.72 E-value=1.9 Score=48.53 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=18.4
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..++.+.+++|||+|||..+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4578999999999999988643
No 374
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=85.64 E-value=0.91 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=19.8
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
..++++|.|+||||||.+ +..++..+.
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 367999999999999986 333444443
No 375
>CHL00176 ftsH cell division protein; Validated
Probab=85.57 E-value=3 Score=48.39 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++|+.+|+|+|||..+-.
T Consensus 216 p~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999998754
No 376
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.53 E-value=4.8 Score=43.24 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=22.2
Q ss_pred HHHHHhcCC---ceeEeccCCCchHHHHHHHHHHHHh
Q 007492 450 FQTVYYTNE---NILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 450 i~~~l~~~~---n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+-.++.+|+ .+|+++|.|.|||..+.. +.+.+.
T Consensus 35 L~~a~~~grl~ha~L~~G~~G~GKttlA~~-lA~~Ll 70 (351)
T PRK09112 35 LAQAYREGKLHHALLFEGPEGIGKATLAFH-LANHIL 70 (351)
T ss_pred HHHHHHcCCCCeeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 334444454 589999999999988765 333443
No 377
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.46 E-value=3.9 Score=47.27 Aligned_cols=20 Identities=45% Similarity=0.700 Sum_probs=16.2
Q ss_pred ceeEeccCCCchHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~i 478 (601)
-+|+++|.|.|||.++.+-+
T Consensus 41 ayLf~Gp~G~GKtt~A~~lA 60 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFA 60 (614)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999765533
No 378
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=85.40 E-value=0.65 Score=46.05 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.4
Q ss_pred eeEeccCCCchHHH
Q 007492 460 ILVCAPTGAGKTNI 473 (601)
Q Consensus 460 ~lv~ApTGsGKT~v 473 (601)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 379
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.40 E-value=3.2 Score=50.22 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=58.1
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
+.+++|++|+++-+..++..+.+.+. +++|..++|++....+. ..+.+|+|||- ++.+ +.++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~----iie~-GIDIp--- 729 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT----IIET-GIDIP--- 729 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC----hhhc-ccccc---
Confidence 57899999999999998888887653 57899999998765332 24799999993 4444 44554
Q ss_pred CccEEEeccCccc
Q 007492 568 LVKLLIIDEVHLL 580 (601)
Q Consensus 568 ~v~llIiDEaH~l 580 (601)
.+.+||++.++..
T Consensus 730 ~v~~VIi~~a~~~ 742 (926)
T TIGR00580 730 NANTIIIERADKF 742 (926)
T ss_pred cCCEEEEecCCCC
Confidence 5889999888764
No 380
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.32 E-value=1.3 Score=48.04 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=27.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
..+++++.+.||||||. ++-.++..+.. .+.++||.=|.-+...
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~---------~g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRA---------RGDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHH---------TT-EEEEEEETTHHHH
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHH---------cCCEEEEEECCchHHH
Confidence 36799999999999997 45566666654 2445555555554433
No 381
>PRK05642 DNA replication initiation factor; Validated
Probab=85.28 E-value=1.1 Score=45.00 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=28.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.++++++|+|+|||..+. ++.+.+.. .+.+++|+.. ..+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~---------~~~~v~y~~~-~~~~~~ 87 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ---------RGEPAVYLPL-AELLDR 87 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh---------CCCcEEEeeH-HHHHhh
Confidence 578999999999998844 34444432 3567888754 555543
No 382
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.17 E-value=1.9 Score=42.80 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=35.5
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|..+++.+++|+|||..++-.+...+. .+.+++|+.-. +-..++.+.+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~----------~g~~~~y~s~e-~~~~~l~~~~~~ 65 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK----------NGEKAMYISLE-EREERILGYAKS 65 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEECC-CCHHHHHHHHHH
Confidence 4678899999999999876655544332 35678887654 446666666654
No 383
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.13 E-value=0.97 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=15.6
Q ss_pred CCceeEeccCCCchHHHH
Q 007492 457 NENILVCAPTGAGKTNIA 474 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va 474 (601)
+...++.+|+|||||.+.
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999885
No 384
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=85.05 E-value=1 Score=48.41 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.4
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..-+++.+|.|+|||+.+-+
T Consensus 148 PlgllL~GPPGcGKTllAra 167 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCEL 167 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHH
Confidence 34578899999999998765
No 385
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=85.04 E-value=0.59 Score=41.26 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=14.8
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
++|++|+|||||.++-.
T Consensus 2 I~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999988755
No 386
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=84.98 E-value=1.3 Score=44.09 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=20.6
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
++.+.|.|.||||||+.... ++..+.
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57899999999999999766 444444
No 387
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=84.93 E-value=2.8 Score=48.36 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh--HHHHHHHHHHhhcC
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA--LAAEVTRTFSSRLS 520 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra--La~Q~~~~~~~~l~ 520 (601)
..+.+|+++||+|||..+.+.+.+.+.. +..++++=|-.. |..-++..+.+...
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~----------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR----------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc----------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 5789999999999999988877776643 457788878774 56666666655444
No 388
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.74 E-value=1.4 Score=52.00 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.0
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+|+++|+|+|||.++-.
T Consensus 487 ~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999988655
No 389
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.70 E-value=5 Score=44.60 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=34.5
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|.-+++.+++|+|||..++-.+.+ +.. .+.+++|+..- +-..|+..+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~-~a~---------~g~kvlYvs~E-Es~~qi~~ra~r 143 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ-LAK---------NQMKVLYVSGE-ESLQQIKMRAIR 143 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HHh---------cCCcEEEEECc-CCHHHHHHHHHH
Confidence 4678899999999999987654433 322 34589999764 345566555443
No 390
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.67 E-value=2.9 Score=52.90 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHH--HHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIA--MISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va--~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
.|++-|..++..++.+ ++-++|.++.|+|||.+. ++.++..+.. ..+.+++.++||-.-|.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e--------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE--------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh--------ccCceEEEEechHHHHHHHH
Confidence 6999999999998853 467899999999999884 3333333322 24578999999988877754
No 391
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=84.54 E-value=1.7 Score=51.11 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=34.9
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.|.-++|++|+|+|||..++-.+..... .+.+++|+..--.+..+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~----------~G~~v~yId~E~t~~~~ 103 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQA----------AGGVAAFIDAEHALDPD 103 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------cCCcEEEECCccchhHH
Confidence 4778899999999999998776665432 36789999988777754
No 392
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.53 E-value=3 Score=53.41 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHH--HHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIA--MISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va--~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
.|++.|..++..++.+ ++-++|++..|+|||.+. ++.++..+.. ..+.+++.++||-.-|.++.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~--------~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPE--------SERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhc--------ccCceEEEECCcHHHHHHHH
Confidence 6899999999999854 467899999999999874 2223322211 23568999999988777654
No 393
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.47 E-value=0.86 Score=52.76 Aligned_cols=46 Identities=24% Similarity=0.140 Sum_probs=35.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
...+++++||||||||..+++|.|-. .+..+|++=|--++..-...
T Consensus 174 g~~HvlviapTgSGKgvg~ViPnLL~------------~~~S~VV~D~KGE~~~~Tag 219 (636)
T PRK13880 174 GPEHVLTYAPTRSGKGVGLVVPTLLS------------WGHSSVITDLKGELWALTAG 219 (636)
T ss_pred CCceEEEEecCCCCCceEEEccchhh------------CCCCEEEEeCcHHHHHHHHH
Confidence 35799999999999999998887642 24468888888888654443
No 394
>PHA00729 NTP-binding motif containing protein
Probab=84.40 E-value=1.4 Score=44.17 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=33.7
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhccc---CCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRD---GYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~---~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|+++.+++|+|||..|.... +.+..+... +...-...+-.++++..+|...+...+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa-~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVA-RDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN 79 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc
Confidence 389999999999998876533 333211100 00000123345666777888877655433
No 395
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=84.35 E-value=0.66 Score=41.01 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.8
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
++|++++|||||.++-.
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 57999999999999754
No 396
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.34 E-value=1.3 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+.++++.+|+|+|||.++..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHH
Confidence 4689999999999999999865
No 397
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=84.31 E-value=2.5 Score=46.61 Aligned_cols=84 Identities=20% Similarity=0.170 Sum_probs=47.1
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.-+++++|+|+|||.++.--+.....+ .+.++++|. +.|.-+.++...+.. ..|+.+.........
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~---------~g~kV~lV~~D~~R~~a~~QL~~~a~---~~gvp~~~~~~~~~P 167 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK---------QGKKVLLVACDLYRPAAIEQLKVLGQ---QVGVPVFALGKGQSP 167 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh---------CCCeEEEEeccccchHHHHHHHHHHH---hcCCceEecCCCCCH
Confidence 357889999999999875544332111 355676666 556655555555443 345555443321111
Q ss_pred ---chh-----hcCCc-cEEEEChhhH
Q 007492 536 ---SRN-----ELEET-QMIVTTPEKW 553 (601)
Q Consensus 536 ---~~~-----~~~~~-~IiVtTPekl 553 (601)
... ...++ .|||=||++.
T Consensus 168 ~~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 168 VEIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 111 11334 5899999974
No 398
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.27 E-value=1.5 Score=44.10 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHh--cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 443 NRIQSRIFQTVYY--TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 443 ~~iQ~~~i~~~l~--~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
|.....++..+.. .+.++++++|+|+|||..+.. +.+.+.. .+.+++|+.-.
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a-~~~~~~~---------~~~~v~y~~~~ 82 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHA-ACAELSQ---------RGRAVGYVPLD 82 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH-HHHHHHh---------CCCeEEEEEHH
Confidence 4444444444321 246899999999999988654 3333332 35677777543
No 399
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.06 E-value=2.9 Score=46.90 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=15.9
Q ss_pred eeEeccCCCchHHHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~i 478 (601)
+|+++|.|+|||.++.+-.
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998887643
No 400
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=1.3 Score=50.07 Aligned_cols=20 Identities=40% Similarity=0.795 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..-+|+|+|.|+|||+.|-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKA 564 (802)
T ss_pred CCceEEeCCCCccHHHHHHH
Confidence 45799999999999987644
No 401
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=84.02 E-value=0.48 Score=45.25 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=27.6
Q ss_pred hhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 538 NELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 538 ~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.....++|||+++.-+ +...++... .+...-.+|||||||.|.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~-~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLF-GIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHC-T--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhc-cccccCcEEEEecccchHH
Confidence 3445789999999984 433333322 1112346999999999975
No 402
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=83.98 E-value=1.7 Score=41.70 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=32.8
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
..++|.+|+|||||..+..-+.. .+..++|++..+..-.++..+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~-------------~~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ-------------SGLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH-------------cCCCcEeCcCCCCChHHHHHHHH
Confidence 35899999999999987654322 13357899988877777655543
No 403
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=83.96 E-value=1.7 Score=45.93 Aligned_cols=85 Identities=20% Similarity=0.383 Sum_probs=50.8
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~ 536 (601)
|+-+-+++|+|+|||..++-.+.+. .+ .+..++||-|-.+|-......+ |+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~-q~---------~g~~~a~ID~e~~ld~~~a~~l-------Gvdl---------- 105 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA-QK---------QGGICAFIDAEHALDPEYAESL-------GVDL---------- 105 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-HH---------TT-EEEEEESSS---HHHHHHT-------T--G----------
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh-hc---------ccceeEEecCcccchhhHHHhc-------Cccc----------
Confidence 5667799999999999987655543 22 3678999999999866544433 3221
Q ss_pred hhhcCCccEEEEChhh----H---HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 537 RNELEETQMIVTTPEK----W---DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 537 ~~~~~~~~IiVtTPek----l---d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
.+++|..|+. | +.+.+.. .+++||+|=+-.|.
T Consensus 106 ------~rllv~~P~~~E~al~~~e~lirsg-------~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 106 ------DRLLVVQPDTGEQALWIAEQLIRSG-------AVDLVVVDSVAALV 144 (322)
T ss_dssp ------GGEEEEE-SSHHHHHHHHHHHHHTT-------SESEEEEE-CTT-B
T ss_pred ------cceEEecCCcHHHHHHHHHHHhhcc-------cccEEEEecCcccC
Confidence 2577777754 2 3333321 37799999888764
No 404
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=83.93 E-value=0.69 Score=42.01 Aligned_cols=17 Identities=41% Similarity=0.964 Sum_probs=14.7
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
+++|+|+|||||..+-.
T Consensus 2 ii~~G~pgsGKSt~a~~ 18 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKR 18 (143)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999988654
No 405
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=83.92 E-value=5.5 Score=44.79 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHH-----hcC----CceeEeccCCCchHHHHH-HHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 441 SLNRIQSRIFQTVY-----YTN----ENILVCAPTGAGKTNIAM-ISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l-----~~~----~n~lv~ApTGsGKT~va~-l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.+-|+|.-++-.++ .++ .-.+|..|-|-|||..+. +.....+..+ ..+..+.+++|+.+-+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------hcCCcEEEEeccHHHHHH
Confidence 45677777776665 122 256899999999988765 4443333332 357889999999999998
Q ss_pred HHHHHHhhcC
Q 007492 511 VTRTFSSRLS 520 (601)
Q Consensus 511 ~~~~~~~~l~ 520 (601)
.....+..+.
T Consensus 134 ~F~~ar~mv~ 143 (546)
T COG4626 134 SFNPARDMVK 143 (546)
T ss_pred hhHHHHHHHH
Confidence 8877766544
No 406
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=83.89 E-value=1.5 Score=43.33 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=27.9
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA 502 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la 502 (601)
.|.-++|++|+|+|||..++-.+..... .+.+++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~----------~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG----------QGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------cCCeEEEEE
Confidence 3667899999999999998776655432 366888884
No 407
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=83.73 E-value=2.4 Score=45.99 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=20.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
.|...+|.||.|+|||..+.. |.+.+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 588999999999999965433 444444
No 408
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=83.72 E-value=1.4 Score=45.02 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=37.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|..++|.+++|||||..++=.+.+.+. .+-+++||+ +.+...++.+.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~----------~ge~vlyvs-~~e~~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR----------EGEPVLYVS-TEESPEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh----------cCCcEEEEE-ecCCHHHHHHHHHH
Confidence 5889999999999999987665555432 356788876 55666666666655
No 409
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=83.61 E-value=1.5 Score=50.12 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.9
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
..++++.|+||||||.+ +-.++..+.
T Consensus 176 ~~h~li~G~tGsGKs~~-i~~ll~~~~ 201 (566)
T TIGR02759 176 TQHILIHGTTGSGKSVA-IRKLLRWIR 201 (566)
T ss_pred ccceEEEcCCCCCHHHH-HHHHHHHHH
Confidence 57999999999999964 444555553
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=83.53 E-value=2.6 Score=46.52 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=47.1
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.-+++++|+|+|||.++.--+.. +.. ..+.++++|+ +.|.-+.++...+.. ..|+.+.........
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~-l~~--------~~G~kV~lV~~D~~R~aa~eQL~~~a~---~~gv~v~~~~~~~dp 168 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKY-LKK--------KKKKKVLLVAADVYRPAAIEQLKTLGE---QIGVPVFPSGDGQDP 168 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HHH--------hcCCcEEEEEccccchHHHHHHHHHHh---hcCCeEEecCCCCCH
Confidence 45788999999999886543332 222 1255676665 667666655555544 346665433211111
Q ss_pred ---chh-----hcCCc-cEEEEChhhH
Q 007492 536 ---SRN-----ELEET-QMIVTTPEKW 553 (601)
Q Consensus 536 ---~~~-----~~~~~-~IiVtTPekl 553 (601)
... ...++ -|||=||+++
T Consensus 169 ~~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 169 VDIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 111 11233 5899999975
No 411
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.45 E-value=5.8 Score=40.99 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.0
Q ss_pred cCCceeEeccCCCchHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~i 478 (601)
.+..+.+++|+|+|||..+...+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45789999999999999876544
No 412
>PRK05636 replicative DNA helicase; Provisional
Probab=83.37 E-value=3 Score=47.05 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=57.1
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE-eCCC
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL-TGDM 533 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l-~Gd~ 533 (601)
..|.-++|.|.||+|||..++-.+.+...+ .+..++|+ .+-.-..|+..++-.... ++....+ .|..
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~---------~g~~v~~f-SlEMs~~ql~~R~ls~~s--~v~~~~i~~g~l 330 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIK---------HNKASVIF-SLEMSKSEIVMRLLSAEA--EVRLSDMRGGKM 330 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCeEEEE-EeeCCHHHHHHHHHHHhc--CCCHHHHhcCCC
Confidence 346677889999999999877544433222 24456655 333334444444433222 1211111 2222
Q ss_pred ccc--------hhhcCCccEEEE-Chhh-HHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 534 QLS--------RNELEETQMIVT-TPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 534 ~~~--------~~~~~~~~IiVt-TPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.-. ...+.+..+.|. +|.. ++.+..+...+.....+++||||=.|+|..
T Consensus 331 ~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 331 DEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 110 011334555553 4432 333322211111112489999999999974
No 413
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=83.31 E-value=1.5 Score=52.31 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=21.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
++.|++|+|+||||||.....-+.+.+
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~ 455 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNL 455 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999765444443
No 414
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.30 E-value=2.8 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.4
Q ss_pred CceeEeccCCCchHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~i 478 (601)
+-+|+++|.|.|||.+|.+-.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 358899999999999987643
No 415
>PRK13695 putative NTPase; Provisional
Probab=83.24 E-value=14 Score=35.03 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.6
Q ss_pred ceeEeccCCCchHHHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l 482 (601)
+++++++.|+|||..+.. +...+
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 578999999999998764 34443
No 416
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=1.1 Score=49.44 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCceeEeccCCCchHHHH
Q 007492 448 RIFQTVYYTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 448 ~~i~~~l~~~~n~lv~ApTGsGKT~va 474 (601)
+++..+.-.|+|+|+.+|.|||||..+
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 455555557999999999999999876
No 417
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=82.92 E-value=4.8 Score=52.59 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 440 KSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
..|++.|..++..++.+ ++-++|.++.|+|||.+.. .++..+...+. ..+.+++.++||-.-|.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~-~~~~~i~~~~~-----~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLE-SRYKPVLQAFE-----SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHH-HHHHHHHHHHH-----hcCCeEEEEeChHHHHHHHH
Confidence 47999999999998844 4566889999999998752 12222221111 24678999999988877664
No 418
>PRK06904 replicative DNA helicase; Validated
Probab=82.80 E-value=6.2 Score=44.11 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=34.4
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
+..|.-++|.|.||.|||..++-.+.+.... .+..++|++ .---..|+..++-...
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~---------~g~~Vl~fS-lEMs~~ql~~Rlla~~ 273 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA---------SEKPVLVFS-LEMPAEQIMMRMLASL 273 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---------cCCeEEEEe-ccCCHHHHHHHHHHhh
Confidence 3457778889999999999765433332222 245566664 3345566666655443
No 419
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=82.76 E-value=2.1 Score=44.45 Aligned_cols=89 Identities=20% Similarity=0.354 Sum_probs=56.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.|.=+=|++|-|||||.+++-.+..... .+.+++||---.+|--+-...+....
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~----------~g~~a~fIDtE~~l~p~r~~~l~~~~---------------- 112 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK----------PGGKAAFIDTEHALDPERAKQLGVDL---------------- 112 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc----------CCCeEEEEeCCCCCCHHHHHHHHHhh----------------
Confidence 3455568999999999999887777543 45699999877777554444333221
Q ss_pred chhhcCCccEEEEChhhH-------HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 536 SRNELEETQMIVTTPEKW-------DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 536 ~~~~~~~~~IiVtTPekl-------d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
--.++|..|... +.+.+.... .+++||||=+=.+.
T Consensus 113 ------~d~l~v~~~~~~e~q~~i~~~~~~~~~~-----~i~LvVVDSvaa~~ 154 (279)
T COG0468 113 ------LDNLLVSQPDTGEQQLEIAEKLARSGAE-----KIDLLVVDSVAALV 154 (279)
T ss_pred ------hcceeEecCCCHHHHHHHHHHHHHhccC-----CCCEEEEecCcccc
Confidence 124667766653 112221111 48999999876654
No 420
>PRK05595 replicative DNA helicase; Provisional
Probab=82.72 E-value=2.7 Score=46.58 Aligned_cols=116 Identities=15% Similarity=0.209 Sum_probs=57.6
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE-eCCC
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL-TGDM 533 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l-~Gd~ 533 (601)
..|.-++|.|+||+|||..++-.+.+.... .+.+++|+.. -.-..|+..++-.... ++....+ .|..
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~---------~g~~vl~fSl-Ems~~~l~~R~~a~~~--~v~~~~~~~~~l 266 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALR---------EGKSVAIFSL-EMSKEQLAYKLLCSEA--NVDMLRLRTGNL 266 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHH---------cCCcEEEEec-CCCHHHHHHHHHHHhc--CCCHHHHhcCCC
Confidence 356777889999999999877655442222 3556776643 3334555555433322 2222111 2222
Q ss_pred ccch--------hhcCCccEEEE-Chhh-HHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 534 QLSR--------NELEETQMIVT-TPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 534 ~~~~--------~~~~~~~IiVt-TPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.... ..+.+..+.|- +|+. ++.+..+...+.....+++||||=.|+|..
T Consensus 267 ~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 267 EDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSG 325 (444)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccC
Confidence 1100 11233445553 3332 222221111111112488999999999974
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.69 E-value=3.1 Score=44.01 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=33.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRL 519 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l 519 (601)
.+.-+++++|+|+|||.++.--+.. +.. .+.+++++. +.++-+.++...+..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~-l~~---------~g~~V~Li~~D~~r~~a~eql~~~a~~~ 168 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK-YKA---------QGKKVLLAAGDTFRAAAIEQLQVWGERV 168 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh---------cCCeEEEEecCccchhhHHHHHHHHHHc
Confidence 3567888999999999875432221 222 355777665 34666655555555543
No 422
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=82.67 E-value=2.1 Score=48.88 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhh
Q 007492 441 SLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQH 485 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~ 485 (601)
+|+.||......++ ..|.=.+..+|||+|||+..+-+.+..+..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 79999998776665 4577778899999999999877777766554
No 423
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=82.58 E-value=7.2 Score=42.09 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.8
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHh
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
-+|+++|.|.||+..+...+-..+.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5899999999999887664444333
No 424
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=82.35 E-value=2.7 Score=49.91 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|+|+|||.++..
T Consensus 347 ~~~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987654
No 425
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.25 E-value=3.8 Score=48.46 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHH--HHHHHHHHhhcCCCCcEEEEEeCCC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA--AEVTRTFSSRLSPLNMIVRELTGDM 533 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa--~Q~~~~~~~~l~~~~i~V~~l~Gd~ 533 (601)
...|+|+.+|+|+|||.++-......+.. +....-....+|-...-++. ......|..+++..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~----~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l----------- 270 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG----DVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL----------- 270 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc----CCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHH-----------
Q ss_pred ccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCCh-----HHHHHHHHHHHhh
Q 007492 534 QLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRG-----PVIEALVARTLRQ 598 (601)
Q Consensus 534 ~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg-----~~le~iv~r~~r~ 598 (601)
++.+.... -.+|+|||+|.|....+ ..+..++..++.+
T Consensus 271 -------------------~~~l~~~~--------~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~ 313 (758)
T PRK11034 271 -------------------LKQLEQDT--------NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS 313 (758)
T ss_pred -------------------HHHHHhcC--------CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC
No 426
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=82.01 E-value=3.5 Score=40.11 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=31.0
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.=++|....|-|||.+|+-.+++.+.. +.++.|+-=+|-=
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~Gh----------G~rv~vvQFiKg~ 68 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGH----------GLRVGVVQFIKGG 68 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcC----------CCEEEEEEEeecC
Confidence 346777888899999999999998864 7788887655544
No 427
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=81.92 E-value=2.4 Score=44.48 Aligned_cols=80 Identities=14% Similarity=0.274 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHH-HHHHHhhhcccCCCCCCCcEEEEEccChhH-HHHHHHHHHhhcC
Q 007492 443 NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMIS-ILHEIGQHFRDGYLHKDEFKIVYVAPMKAL-AAEVTRTFSSRLS 520 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~-il~~l~~~~~~~~~~~~~~kvl~laPtraL-a~Q~~~~~~~~l~ 520 (601)
...|-+.|+..+.+|..+++.++.|.|||+..+.- |.-...+.+-.... ....+++||.- +| -..+..+++-.+.
T Consensus 75 rs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v-~epGkvlyvsl--El~re~~L~Rl~~v~a 151 (402)
T COG3598 75 RSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKV-KEPGKVLYVSL--ELYREDILERLEPVRA 151 (402)
T ss_pred cccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccc-cCCCeEEEEEe--ccChHHHHHHHHHHHH
Confidence 34566788888888999999999999999997653 33333333322122 24568888852 22 2245555655555
Q ss_pred CCCcE
Q 007492 521 PLNMI 525 (601)
Q Consensus 521 ~~~i~ 525 (601)
.+|+.
T Consensus 152 ~mgLs 156 (402)
T COG3598 152 RMGLS 156 (402)
T ss_pred HcCCC
Confidence 55543
No 428
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.90 E-value=3.4 Score=49.47 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=15.4
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+|+++|||+|||..+-.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKA 558 (821)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999988654
No 429
>PHA02244 ATPase-like protein
Probab=81.90 E-value=1.8 Score=46.61 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHHhcCCceeEeccCCCchHHHHHH
Q 007492 451 QTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 451 ~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
..++..+.++++.+|||+|||..+..
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtLA~a 138 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHIAEQ 138 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 34456789999999999999988654
No 430
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=81.89 E-value=1.5 Score=43.30 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCceeEeccCCCchHHHHH
Q 007492 448 RIFQTVYYTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 448 ~~i~~~l~~~~n~lv~ApTGsGKT~va~ 475 (601)
.++..+.-.+.|+|+.+|.|+|||..+-
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHHH
Confidence 4444444468899999999999998863
No 431
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=81.65 E-value=2 Score=49.84 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=39.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL 529 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l 529 (601)
..++++.||||||||..+++|-+- . -+.-+|++=|.-++...... +++. .|-+|..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL---~---------~~gS~VV~DpKgEl~~~Ta~-~R~~---~G~~V~vf 280 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL---K---------WGGPLVVLDPSTEVAPMVSE-HRRD---AGREVIVL 280 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh---c---------CCCCEEEEeCcHHHHHHHHH-HHHH---CCCeEEEE
Confidence 579999999999999999999653 1 23467777788888765444 4433 24444444
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.60 E-value=2.6 Score=47.31 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=38.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.|..++|++|+|+|||..++--+.+.+.+ .+-+++||+- -+-..++.+.+.++
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~---------~ge~~lyvs~-eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH---------FDEPGVFVTF-EESPQDIIKNARSF 72 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEEEE-ecCHHHHHHHHHHc
Confidence 47889999999999999987766665432 2567888884 35556666665543
No 433
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.46 E-value=3.6 Score=45.43 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=34.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEE
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVR 527 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~ 527 (601)
...+++++|+|+|||.++.--+. .+.+ .+.++++++ +.|.-+.++...+... .++.+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~-~L~~---------~g~kV~lV~~D~~R~aa~eQL~~la~~---~gvp~~ 154 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR-YFKK---------KGLKVGLVAADTYRPAAYDQLKQLAEK---IGVPFY 154 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHH---------cCCeEEEecCCCCCHHHHHHHHHHHHH---cCCcEE
Confidence 45789999999999988754332 3332 245666555 4455555555555443 345443
No 434
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=81.37 E-value=2.1 Score=42.50 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=28.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
.|.-+++++|+|+|||..++-.+.+.+. .+.+++|+.=-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~----------~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK----------NGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEECC
Confidence 4678899999999999988765554432 35678888644
No 435
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=81.32 E-value=8.8 Score=39.17 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=18.7
Q ss_pred cCC-ceeEeccCCCchHHHHHHHHHH
Q 007492 456 TNE-NILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 456 ~~~-n~lv~ApTGsGKT~va~l~il~ 480 (601)
.++ -+.+|++-|||||.+.- +++.
T Consensus 49 d~qg~~~vtGevGsGKTv~~R-al~~ 73 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRR-ALLA 73 (269)
T ss_pred cCCceEEEEecCCCchhHHHH-HHHH
Confidence 344 77899999999999977 4444
No 436
>PRK06893 DNA replication initiation factor; Validated
Probab=81.23 E-value=2.1 Score=42.97 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=24.4
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
+..+++++|+|+|||..+.. +.+.+.. .+.+++|+.-
T Consensus 39 ~~~l~l~G~~G~GKThL~~a-i~~~~~~---------~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKA-VSNHYLL---------NQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---------cCCCeEEeeH
Confidence 34579999999999987655 3343333 2456677654
No 437
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=81.09 E-value=0.98 Score=47.33 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~i 478 (601)
+.-++|++|||||||..++--.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA 25 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFP 25 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3457899999999999876533
No 438
>PRK08506 replicative DNA helicase; Provisional
Probab=81.07 E-value=6.6 Score=43.93 Aligned_cols=113 Identities=18% Similarity=0.297 Sum_probs=60.0
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEE-EeCCC
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRE-LTGDM 533 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~-l~Gd~ 533 (601)
..|.-++|.|+||.|||..++-.+.+.. . .+..++|++ .-.=+.|+..++-...... .... ..|..
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~-~---------~g~~V~~fS-lEMs~~ql~~Rlla~~s~v--~~~~i~~~~l 256 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKAL-N---------QDKGVAFFS-LEMPAEQLMLRMLSAKTSI--PLQNLRTGDL 256 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHH-h---------cCCcEEEEe-CcCCHHHHHHHHHHHhcCC--CHHHHhcCCC
Confidence 3577889999999999998877665543 2 245666664 3345666666654433322 2111 12332
Q ss_pred ccch--------hhcCCccEEEE-C----hhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 534 QLSR--------NELEETQMIVT-T----PEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 534 ~~~~--------~~~~~~~IiVt-T----Pekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.... ..+.+..+.|. + +..+....|+.... ...+++||||=.++|..
T Consensus 257 ~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~--~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 257 DDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQ--HPEIGLAVIDYLQLMSG 316 (472)
T ss_pred CHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEcChhhccC
Confidence 2110 11234445553 2 22222122221100 01488999999999963
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=80.99 E-value=3.8 Score=38.74 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=15.4
Q ss_pred eeEeccCCCchHHHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~i 478 (601)
+++.+|+|+|||.++...+
T Consensus 3 ~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999965533
No 440
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.85 E-value=11 Score=40.04 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhc----CCceeEeccCCCchHHHHHHHHHHHH
Q 007492 443 NRIQSRIFQTVYYT----NENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~----~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
+|||...+..+... ..-+|+++|.|.|||..+..-+-..+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 56666666665422 34689999999999998766444333
No 441
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.84 E-value=2.7 Score=44.27 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=30.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
+.++++.+|+|+|||..+.. +.+.+.. .+..++|+ .+-.|+.++...
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~---------~g~~v~~~-~~~~l~~~lk~~ 202 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAK---------KGVSSTLL-HFPEFIRELKNS 202 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---------cCCCEEEE-EHHHHHHHHHHH
Confidence 56899999999999988654 4555543 34555554 233566665543
No 442
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=80.84 E-value=2.4 Score=43.22 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=16.3
Q ss_pred cCCceeEeccCCCchHHH
Q 007492 456 TNENILVCAPTGAGKTNI 473 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~v 473 (601)
.|+.+++.+|.|+|||..
T Consensus 15 ~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 589999999999999964
No 443
>PHA00012 I assembly protein
Probab=79.99 E-value=4.6 Score=42.75 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=20.2
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhh
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQ 484 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~ 484 (601)
-+|++..|||||..++.-|...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999998877666543
No 444
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=79.85 E-value=1.3 Score=42.38 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=15.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|||+|||..+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~ 22 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKA 22 (171)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3789999999999986544
No 445
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=79.76 E-value=3.6 Score=39.77 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=34.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
...-+.|....|=|||.+|+--+++.+.. +.+|+++-=+|.-
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~----------G~rV~iiQFlKg~ 61 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQ----------GTPVLIVQFLKGG 61 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcC----------CCEEEEEEEecCC
Confidence 35567788899999999999999998764 7888888777665
No 446
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=79.68 E-value=14 Score=39.36 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHH---hc---CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCC-----------CCCCcEEEEEccC-
Q 007492 443 NRIQSRIFQTVY---YT---NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYL-----------HKDEFKIVYVAPM- 504 (601)
Q Consensus 443 ~~iQ~~~i~~~l---~~---~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~-----------~~~~~kvl~laPt- 504 (601)
+|||...+..+. .+ .+-.|++||.|.||+..|..-+-..+......+.. ....+-+.++.|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 455555555443 23 34678999999999998766554444432111110 1123456777773
Q ss_pred -hhH-HHHHHHHHHhhc----CCCCcEEEEEeCCCccc
Q 007492 505 -KAL-AAEVTRTFSSRL----SPLNMIVRELTGDMQLS 536 (601)
Q Consensus 505 -raL-a~Q~~~~~~~~l----~~~~i~V~~l~Gd~~~~ 536 (601)
+.. ++|+. .+.+.+ ..-+.+|..+..-..++
T Consensus 84 ~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~ 120 (325)
T PRK06871 84 NKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLT 120 (325)
T ss_pred CCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhC
Confidence 222 44443 333332 22357788877755554
No 447
>PRK09165 replicative DNA helicase; Provisional
Probab=79.66 E-value=6.7 Score=44.16 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=60.7
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcc----cCCC-CCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFR----DGYL-HKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL 529 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~----~~~~-~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l 529 (601)
..|.-++|.|+||+|||..++-.+.+....+.. ++.. ...+.+++|+ .+-.=..|+..++-.........- ..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~~-i~ 292 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSSK-IR 292 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHHH-Hh
Confidence 357778999999999999877655543322110 0000 0124566666 444445666666544332221111 11
Q ss_pred eCCCccc--------hhhcCCccEEEEC-hhh-HHHH---HccCCCCCccCCccEEEeccCcccCC
Q 007492 530 TGDMQLS--------RNELEETQMIVTT-PEK-WDVI---TRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 530 ~Gd~~~~--------~~~~~~~~IiVtT-Pek-ld~l---~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.|...-. ...+....+.|.. |.. ++.+ .++... ...+++||||=.|+|..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~---~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR---QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHhccC
Confidence 2322210 1122344555543 221 2222 222111 12488999999999864
No 448
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=79.60 E-value=2.3 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=19.6
Q ss_pred CceeEeccCCCchHHHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.|.+||+|||||||....+.+.+..
T Consensus 437 ghT~I~G~tGaGKTvLl~~llaq~~ 461 (796)
T COG3451 437 GHTLIIGPTGAGKTVLLSFLLAQAL 461 (796)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4999999999999988655454443
No 449
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=79.55 E-value=4.9 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|+|+|||..+-.
T Consensus 211 ~~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CCceEEEECCCCCChHHHHHH
Confidence 367899999999999977543
No 450
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=79.48 E-value=6 Score=48.13 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.++++.||.|..+=..++...++.+... .+|+..+|-|.-..-+ -++.+|+|||. +...+.+..
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPE--arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtGIDIP-- 872 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPE--ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETGIDIP-- 872 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCc--eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecCcCCC--
Confidence 4789999999999999999999988764 4688889988754321 25799999995 344455655
Q ss_pred CCccEEEeccCcccC
Q 007492 567 MLVKLLIIDEVHLLN 581 (601)
Q Consensus 567 ~~v~llIiDEaH~l~ 581 (601)
+...|||+-||+++
T Consensus 873 -nANTiIIe~AD~fG 886 (1139)
T COG1197 873 -NANTIIIERADKFG 886 (1139)
T ss_pred -CCceEEEecccccc
Confidence 57899999999986
No 451
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.25 E-value=2.9 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.0
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..++-+.+++|||+|||.....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3577889999999999988643
No 452
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.17 E-value=6 Score=44.37 Aligned_cols=77 Identities=26% Similarity=0.360 Sum_probs=57.3
Q ss_pred CCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCc
Q 007492 493 KDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSL 565 (601)
Q Consensus 493 ~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~ 565 (601)
..+.|+||.|-||--|.++...+++. +..+..++||.+...+. ..++.|+||| |+..| +.++.
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT----dVAaR-GLDi~- 408 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT----DVAAR-GLDVP- 408 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEc----ccccc-cCCCc-
Confidence 35779999999999999999988763 46789999998876543 2468999999 44444 44554
Q ss_pred cCCccEEEe--------ccCcccC
Q 007492 566 SMLVKLLII--------DEVHLLN 581 (601)
Q Consensus 566 ~~~v~llIi--------DEaH~l~ 581 (601)
.|++||- |=+|++.
T Consensus 409 --dV~lVInydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 409 --DVDLVINYDFPNNVEDYVHRIG 430 (519)
T ss_pred --cccEEEeCCCCCCHHHHHhhcC
Confidence 5888874 4466665
No 453
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=79.14 E-value=1.7 Score=38.42 Aligned_cols=17 Identities=47% Similarity=0.772 Sum_probs=14.6
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
+|+.+|.|+|||..+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999988654
No 454
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.12 E-value=1.6 Score=39.64 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++.+|+|+|||..+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 589999999999988654
No 455
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.85 E-value=5.2 Score=43.69 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=37.3
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh-------hHHHHHHHHHHhhc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK-------ALAAEVTRTFSSRL 519 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr-------aLa~Q~~~~~~~~l 519 (601)
...++++||+|+|||.-.-. +-+.+..+ .+..+++|+..-. ++-..-...|++.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~A-ign~~~~~-------~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQA-IGNEALAN-------GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHhh-------CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 46789999999999987443 33333332 2466899998765 44555566777766
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=78.80 E-value=3.7 Score=46.02 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=37.9
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
.|.-+||.+|+|+|||..++-.+..... .+-+++|++ .-+-..|+..++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~----------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA----------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 4778999999999999987665544332 356889987 666677777776543
No 457
>PRK00131 aroK shikimate kinase; Reviewed
Probab=78.76 E-value=1.3 Score=41.48 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.2
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|+|||||.++-.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~ 23 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRL 23 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHH
Confidence 467899999999999999754
No 458
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.71 E-value=3.5 Score=39.24 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=18.1
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHh
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
..+.|.+|.|+|||.+..- +...+.
T Consensus 6 mki~ITG~PGvGKtTl~~k-i~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK-IAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHH-HHHHHH
Confidence 4789999999999987543 333343
No 459
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.67 E-value=6.5 Score=45.54 Aligned_cols=19 Identities=42% Similarity=0.910 Sum_probs=15.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
+=+|+|+|.|.|||..|=+
T Consensus 327 KilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ceEEeecCCCCChhHHHHH
Confidence 4578999999999987654
No 460
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.49 E-value=1.2 Score=48.31 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=17.1
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
...|+|+.+|||||||+.+-
T Consensus 225 eKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred ecccEEEECCCCCchhHHHH
Confidence 45799999999999998753
No 461
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=78.24 E-value=5 Score=42.95 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=29.7
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.+.-+.+++++|+|||..++-.+........ .| ..+.+++||.---.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~-~g---g~~g~vlyIdtE~~f 169 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLD-QG---GGEGKAMYIDTEGTF 169 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchh-hC---CCCceEEEEECCCCc
Confidence 4667789999999999988654443322110 01 123489999755543
No 462
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=78.18 E-value=4.2 Score=47.10 Aligned_cols=74 Identities=19% Similarity=0.104 Sum_probs=53.3
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
|.-.+-.-|..|+...+ +-+--|+++|.|+|||.+.+.++-. +.... ..-.....++++|-|..-+.|......
T Consensus 375 g~~ildsSq~~A~qs~l-tyelsliqgppGTgkt~vtlkav~t-LL~n~---s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 375 GLVILDSSQQFAKQSKL-TYELSLIQGPPGTGKTLVTLKAVDT-LLLNS---SGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred CceeecHHHHHHHHHHh-hhhhheeecCCCCCceeehHHHHHH-HHhcc---cccccccceeeeehhhHHHHHHHHHHH
Confidence 44456678999998887 6788899999999999998775543 33321 112345678999988888888665543
No 463
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=77.94 E-value=2.2 Score=49.16 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
..++++.||||||||..+++|-+- . -+.-+|++=|.-+++..... +++
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL---~---------~~gS~VV~DpKgE~~~~Ta~-~R~ 258 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTAL---K---------YGGPLVCLDPSTEVAPMVCE-HRR 258 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhh---c---------CCCCEEEEEChHHHHHHHHH-HHH
Confidence 479999999999999999999643 2 23467888888888665443 443
No 464
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=77.85 E-value=1.4 Score=46.28 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=16.0
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.-++|++|||||||.++.-
T Consensus 5 ~~i~i~GptgsGKt~la~~ 23 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIE 23 (307)
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3578999999999998764
No 465
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.84 E-value=2.4 Score=46.54 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=34.2
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh-hHHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK-ALAAEVTRTF 515 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr-aLa~Q~~~~~ 515 (601)
+++..+.|++.+|+|||....- ++..+.. ....+.++||.=|- ..+..++...
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~r-vl~~~~~-------~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSR-VLDSLSK-------SSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHH-HHHhhhh-------hcccceeEEEeeccccchHHHHHHH
Confidence 4678999999999999987443 2222222 12356778887664 5555555443
No 466
>PHA00350 putative assembly protein
Probab=77.70 E-value=5.3 Score=43.55 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=18.2
Q ss_pred eeEeccCCCchHHHHHH-HHHHHHh
Q 007492 460 ILVCAPTGAGKTNIAMI-SILHEIG 483 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l-~il~~l~ 483 (601)
.++.++.|||||.-++- -++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 46889999999999875 3555543
No 467
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=77.43 E-value=16 Score=38.70 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHHHHh---cCC---ceeEeccCCCchHHHHHHHHHHHHh
Q 007492 440 KSLNRIQSRIFQTVYY---TNE---NILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~---~~~---n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
..++|+|..++..+.. .++ -+|+++|.|.||+..+..-+-..+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 4678888888877642 232 5899999999999887654433333
No 468
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=77.32 E-value=5 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++.+|+|+|||..+-.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ 368 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQS 368 (784)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 367899999999999977544
No 469
>PLN02165 adenylate isopentenyltransferase
Probab=77.12 E-value=1.7 Score=46.17 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=18.0
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..++|.+|||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 466789999999999998865
No 470
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=77.08 E-value=2.1 Score=49.79 Aligned_cols=50 Identities=20% Similarity=0.113 Sum_probs=36.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
...++++.||||||||..+++|-|-.. ...+||+=|--++..-. ..+++.
T Consensus 143 g~~hvLviApTrSGKgvg~VIPnLL~~------------~~S~VV~D~KGEl~~~T-a~~R~~ 192 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGLVVPTLLTW------------PGSAIVHDIKGENWQLT-AGFRAR 192 (663)
T ss_pred CCceEEEEecCCCCcceeEehhhHHhC------------CCCEEEEeCcchHHHHH-HHHHHh
Confidence 467999999999999999999976421 24677777777776544 334443
No 471
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.86 E-value=2.1 Score=45.27 Aligned_cols=18 Identities=61% Similarity=0.916 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHH
Q 007492 457 NENILVCAPTGAGKTNIA 474 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va 474 (601)
.+|+|..+|||-|||.+|
T Consensus 50 PKNILMIGpTGVGKTEIA 67 (444)
T COG1220 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_pred ccceEEECCCCCcHHHHH
Confidence 689999999999999986
No 472
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=76.80 E-value=3 Score=49.91 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=18.0
Q ss_pred CceeEeccCCCchHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il 479 (601)
.|.+|+||||||||.....-+.
T Consensus 442 gn~~I~G~tGsGKS~l~~~l~~ 463 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLLALMAL 463 (811)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999998765333
No 473
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=76.26 E-value=4 Score=33.71 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCC-----ChhHHHHHHHHhhCCCchHHHHHHHH
Q 007492 227 LSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDK-----PGEEIAGDLLDLVGDSAFETVQDLIS 288 (601)
Q Consensus 227 ~~wL~r~~~~~~~~~~~~~~~~~l~~~i~~~L~s~~-----~~~e~e~~L~~llg~~~~~~i~~l~~ 288 (601)
..|+.+++..++.. ..+.+++-|+.+|.+.. +.++|+.+|-..||-+.-.||..|.+
T Consensus 5 k~WI~~kl~e~lG~-----edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~ 66 (77)
T PF01480_consen 5 KPWISKKLEEILGF-----EDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWR 66 (77)
T ss_dssp HHHHHHHHHHHHSS-------CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 36999999998763 23568999999998654 67899999999999888999998843
No 474
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=76.23 E-value=2.2 Score=39.13 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=13.8
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
+++++|||||||.++..
T Consensus 2 i~i~GpsGsGKstl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976443
No 475
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=76.20 E-value=2.5 Score=44.09 Aligned_cols=42 Identities=21% Similarity=0.440 Sum_probs=28.0
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
.+|.+|||+||+-. |+.+.. ...+....-.|++|+|.+..+-
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis---~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLIS---CQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhh---cCcccCCCCceEEECCCCCCCC
Confidence 46789999999954 332222 1233445668999999988643
No 476
>PRK07004 replicative DNA helicase; Provisional
Probab=76.15 E-value=8.4 Score=42.93 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=57.3
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEE-eCCC
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVREL-TGDM 533 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l-~Gd~ 533 (601)
..|.-++|.|.||+|||..++-.+.+.... .+..++|++ +--=..|++.++-..... +....+ .|..
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~---------~~~~v~~fS-lEM~~~ql~~R~la~~~~--v~~~~i~~g~l 278 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVE---------YGLPVAVFS-MEMPGTQLAMRMLGSVGR--LDQHRMRTGRL 278 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHH---------cCCeEEEEe-CCCCHHHHHHHHHHhhcC--CCHHHHhcCCC
Confidence 457788999999999999876554443322 244565553 333344555544322221 111111 2322
Q ss_pred ccc--------hhhcCCccEEEE-Chh----hHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 534 QLS--------RNELEETQMIVT-TPE----KWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 534 ~~~--------~~~~~~~~IiVt-TPe----kld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
... ...+.+..+.|. ||. .+....++... . ...+++||||=.++|..
T Consensus 279 ~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~-~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 279 TDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-Q-CGKLGLIIIDYLQLMSG 338 (460)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-h-CCCCCEEEEChhhhccC
Confidence 211 112345556653 443 22121122110 0 11378999999999974
No 477
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.95 E-value=29 Score=39.31 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh-------
Q 007492 466 TGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN------- 538 (601)
Q Consensus 466 TGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~------- 538 (601)
.+.||+...++++.+.+..- -.+-+++.+-+.+-|.|.+..+. ..-++.|..++|..+...+
T Consensus 366 vF~gse~~K~lA~rq~v~~g--------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHH
Confidence 57899999889888877652 24567888888999999988886 3357889999998665432
Q ss_pred hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccC
Q 007492 539 ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEV 577 (601)
Q Consensus 539 ~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEa 577 (601)
......++||| +++.|+ .++. .+.+||.+.+
T Consensus 435 R~g~IwvLicT----dll~RG-iDf~---gvn~VInyD~ 465 (593)
T KOG0344|consen 435 RIGKIWVLICT----DLLARG-IDFK---GVNLVINYDF 465 (593)
T ss_pred hccCeeEEEeh----hhhhcc-cccc---CcceEEecCC
Confidence 23578999999 677776 4544 6999999774
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=75.84 E-value=1.9 Score=41.60 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
|..+++++|+|||||.++-+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~ 21 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAA 21 (186)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56889999999999988644
No 479
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=75.74 E-value=1.6 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.1
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
+++++|+|||||.++..
T Consensus 1 i~l~G~~GsGKSTla~~ 17 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASA 17 (163)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 47899999999987654
No 480
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=75.55 E-value=6.9 Score=41.79 Aligned_cols=28 Identities=43% Similarity=0.755 Sum_probs=23.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQ 484 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~ 484 (601)
.|+-+|+.+|+|+|||..|+- |.+.+..
T Consensus 64 aGrgiLi~GppgTGKTAlA~g-Ia~eLG~ 91 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMG-IARELGE 91 (450)
T ss_pred cccEEEEECCCCCcHHHHHHH-HHHHhCC
Confidence 478999999999999988654 6777764
No 481
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=75.49 E-value=8.2 Score=37.76 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
...+++|..++|-|||.+++--.++.+.. +.+|+++-=+|--
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~----------G~~V~ivQFlKg~ 62 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH----------GKKVGVVQFIKGA 62 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC----------CCeEEEEEEecCC
Confidence 46799999999999999999888887764 6788877655543
No 482
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=6.4 Score=41.28 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=18.5
Q ss_pred CCceeEeccCCCchHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il 479 (601)
..-+++.+|.|.|||+-+-+.+-
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa 188 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAA 188 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHH
Confidence 45688999999999998877443
No 483
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=75.42 E-value=3.4 Score=37.73 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.2
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+.+++|++++|+||+.+|-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~ 40 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARA 40 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHC
T ss_pred CCCCcEEEEcCCCCCHHHHHHH
Confidence 5789999999999999998653
No 484
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.41 E-value=3.9 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEeccCcccCCCChHHHHHHHHHHHhh
Q 007492 571 LLIIDEVHLLNDDRGPVIEALVARTLRQ 598 (601)
Q Consensus 571 llIiDEaH~l~d~rg~~le~iv~r~~r~ 598 (601)
++|+|.-|++.+ |.+...+.++++.
T Consensus 132 ~LVlDDyHli~~---~~l~~~l~fLl~~ 156 (894)
T COG2909 132 YLVLDDYHLISD---PALHEALRFLLKH 156 (894)
T ss_pred EEEeccccccCc---ccHHHHHHHHHHh
Confidence 899999999985 7777777777654
No 485
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.99 E-value=2.4 Score=44.06 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.++++.+|+|+|||.+|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34899999999999998844
No 486
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=74.97 E-value=1.9 Score=45.22 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=15.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
=++|++||+||||..++-
T Consensus 5 ~i~I~GPTAsGKT~lai~ 22 (308)
T COG0324 5 LIVIAGPTASGKTALAIA 22 (308)
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 368999999999988654
No 487
>CHL00181 cbbX CbbX; Provisional
Probab=74.67 E-value=2.2 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.0
Q ss_pred CCceeEeccCCCchHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~ 477 (601)
+.++++.+|+|+|||.+|-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 557999999999999998664
No 488
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.59 E-value=4.8 Score=46.86 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=23.7
Q ss_pred EEEeccCcccCC------CChHHHHHHHHHHHhhh
Q 007492 571 LLIIDEVHLLND------DRGPVIEALVARTLRQV 599 (601)
Q Consensus 571 llIiDEaH~l~d------~rg~~le~iv~r~~r~~ 599 (601)
.|.+||.|-+.- +-|-|+..+|+.++..+
T Consensus 767 VIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 767 VIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801 (953)
T ss_pred EEEeccccccCccCCCCCCccccHHHHHHHHHHHh
Confidence 688999999985 45679999999988654
No 489
>PRK08118 topology modulation protein; Reviewed
Probab=74.51 E-value=2.1 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.7
Q ss_pred ceeEeccCCCchHHHHH
Q 007492 459 NILVCAPTGAGKTNIAM 475 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~ 475 (601)
.++|++|.|||||..+-
T Consensus 3 rI~I~G~~GsGKSTlak 19 (167)
T PRK08118 3 KIILIGSGGSGKSTLAR 19 (167)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998654
No 490
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=74.46 E-value=2.2 Score=40.65 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|.|||||.++-.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~ 21 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARA 21 (175)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999999754
No 491
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=74.35 E-value=3.2 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.102 Sum_probs=29.7
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
.|.-+.+++|+|+|||..++-.++...... .....+.+++|+.--
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~----~~~g~~~~viyi~~e 62 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPI----ELGGLEGKAVYIDTE 62 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCcc----ccCCCCccEEEEeCC
Confidence 477889999999999999876555432210 001124688898743
No 492
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=74.24 E-value=4.2 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=19.3
Q ss_pred CCceeEeccCCCchHHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~ 480 (601)
..|.+|.||||||||.....-+.+
T Consensus 488 ~gh~~I~G~tGsGKS~l~~~L~~~ 511 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHLGIIAAQ 511 (852)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999987654444
No 493
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=74.24 E-value=5 Score=48.00 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
++.|++|+||||+|||.....-+.+..
T Consensus 437 ~n~N~~I~G~sGsGKS~l~~~l~~~~~ 463 (829)
T TIGR03783 437 TNRNKFILGPSGSGKSFFTNHLVRQYY 463 (829)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998765555443
No 494
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.10 E-value=6 Score=43.91 Aligned_cols=43 Identities=26% Similarity=0.514 Sum_probs=29.3
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
..++++||+|+|||..+. ++.+.+.. .+.+++|+.. ..+..++
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~---------~~~~v~yi~~-~~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE---------SGGKILYVRS-ELFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH---------cCCCEEEeeH-HHHHHHH
Confidence 458999999999998765 35555543 3577888865 3444443
No 495
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=74.08 E-value=13 Score=41.99 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=44.6
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHcc
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRK 559 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~ 559 (601)
..++||.+.|+..|..++..+.+ .|+++..++|++....+. ....+|+||| |+..|+
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~----~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT----DvaaRG 336 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRK----RGFKVAALHGDLPQEERDRALEKFKDGELRVLVAT----DVAARG 336 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHH----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe----chhhcc
Confidence 34799999999999997776665 578999999998865432 2578999999 666554
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=73.89 E-value=5.9 Score=44.64 Aligned_cols=51 Identities=25% Similarity=0.158 Sum_probs=36.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|..++|.+|+|+|||..++-.+...+. .+-+++|++-. +-..++.+.+..
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~----------~g~~~~yis~e-~~~~~i~~~~~~ 322 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACR----------RGERCLLFAFE-ESRAQLIRNARS 322 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------CCCcEEEEEec-CCHHHHHHHHHH
Confidence 4778899999999999987665554432 36688888644 446676666654
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=73.83 E-value=2.2 Score=40.55 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=16.0
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.-++|++|+|||||.++-.
T Consensus 2 ~~~~i~G~sGsGKttl~~~ 20 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDY 20 (179)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4578999999999998753
No 498
>PRK07773 replicative DNA helicase; Validated
Probab=73.81 E-value=8.3 Score=46.65 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=58.5
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQ 534 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~ 534 (601)
..|.-++|.|++|+|||..++-.+.+...+ .+..++|++ +-.=..|+..++..........- ...|...
T Consensus 215 ~~G~livIagrPg~GKT~fal~ia~~~a~~---------~~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~-i~~g~l~ 283 (886)
T PRK07773 215 HPGQLIIVAARPSMGKTTFGLDFARNCAIR---------HRLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSD-MRSGRMS 283 (886)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHh---------cCCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHH-HhcCCCC
Confidence 357778999999999999877655554332 244566664 43445566655544332221110 0123222
Q ss_pred cch--------hhcCCccEEEE-Chhh-HHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 535 LSR--------NELEETQMIVT-TPEK-WDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 535 ~~~--------~~~~~~~IiVt-TPek-ld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
... ..+.+..+.|. +|.. ++.+..+...+.-...+++||||=.++|..
T Consensus 284 ~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 341 (886)
T PRK07773 284 DDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTS 341 (886)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCC
Confidence 110 12234455553 3321 222221110000011488999999999963
No 499
>PRK07261 topology modulation protein; Provisional
Probab=73.67 E-value=2.3 Score=40.64 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++|++++|||||..+-.
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999988754
No 500
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=73.57 E-value=4.9 Score=40.84 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=29.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
.|.-++|.|+||+|||..++-.+.+.... .+..++|++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~---------~~~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN---------GGYPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT---------TSSEEEEEES
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh---------cCCeEEEEcC
Confidence 46678899999999999987766665543 3578888874
Done!