Query 007492
Match_columns 601
No_of_seqs 395 out of 2072
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 9.9E-40 3.4E-44 403.1 17.9 228 373-600 8-239 (1724)
2 4f92_B U5 small nuclear ribonu 99.9 9.3E-27 3.2E-31 287.8 16.0 168 422-597 905-1075(1724)
3 3ly5_A ATP-dependent RNA helic 99.9 1.5E-25 5.1E-30 227.4 14.3 156 437-597 72-231 (262)
4 3fmo_B ATP-dependent RNA helic 99.9 1E-24 3.5E-29 225.9 17.5 150 437-595 110-264 (300)
5 3fe2_A Probable ATP-dependent 99.9 5.3E-25 1.8E-29 220.2 14.2 163 428-596 36-205 (242)
6 3ber_A Probable ATP-dependent 99.9 1.4E-24 4.9E-29 218.6 13.8 158 429-596 51-215 (249)
7 1vec_A ATP-dependent RNA helic 99.9 5.6E-24 1.9E-28 206.6 16.8 149 437-596 21-175 (206)
8 3iuy_A Probable ATP-dependent 99.9 7.3E-24 2.5E-28 209.6 17.3 154 437-596 38-196 (228)
9 2oxc_A Probable ATP-dependent 99.9 7.5E-24 2.6E-28 210.2 16.1 149 437-596 42-196 (230)
10 1qde_A EIF4A, translation init 99.9 1.3E-23 4.4E-28 206.9 16.8 149 437-596 32-184 (224)
11 1wrb_A DJVLGB; RNA helicase, D 99.9 3.8E-24 1.3E-28 215.1 13.2 154 437-594 41-201 (253)
12 3dkp_A Probable ATP-dependent 99.9 5.5E-24 1.9E-28 212.7 13.8 158 428-593 36-204 (245)
13 1q0u_A Bstdead; DEAD protein, 99.9 5.6E-24 1.9E-28 209.3 13.5 149 437-596 22-179 (219)
14 2pl3_A Probable ATP-dependent 99.9 1.1E-23 3.9E-28 209.2 15.2 154 437-596 43-200 (236)
15 2db3_A ATP-dependent RNA helic 99.9 1.8E-23 6.3E-28 227.1 17.5 162 428-595 63-231 (434)
16 3bor_A Human initiation factor 99.9 1.7E-23 5.8E-28 208.7 14.1 149 437-596 48-202 (237)
17 2va8_A SSO2462, SKI2-type heli 99.9 2.6E-23 8.8E-28 239.5 16.4 157 428-596 15-174 (715)
18 2zj8_A DNA helicase, putative 99.9 1.6E-23 5.6E-28 241.4 14.5 157 428-596 8-167 (720)
19 2p6r_A Afuhel308 helicase; pro 99.9 3.3E-23 1.1E-27 238.2 14.7 156 428-597 10-168 (702)
20 2gxq_A Heat resistant RNA depe 99.9 8.8E-23 3E-27 198.0 14.6 150 437-596 19-173 (207)
21 1t6n_A Probable ATP-dependent 99.9 9.7E-23 3.3E-27 200.2 14.1 146 437-593 32-185 (220)
22 3i5x_A ATP-dependent RNA helic 99.9 2.1E-22 7.2E-27 225.1 14.8 171 422-597 73-256 (563)
23 2i4i_A ATP-dependent RNA helic 99.9 4.2E-22 1.4E-26 213.2 14.9 162 428-593 22-201 (417)
24 3sqw_A ATP-dependent RNA helic 99.9 5E-22 1.7E-26 223.4 14.3 187 406-597 6-205 (579)
25 2j0s_A ATP-dependent RNA helic 99.9 1.8E-21 6.2E-26 208.2 16.5 147 437-594 55-206 (410)
26 3fht_A ATP-dependent RNA helic 99.9 5.9E-21 2E-25 203.5 18.7 149 437-593 43-195 (412)
27 3fmp_B ATP-dependent RNA helic 99.9 3.8E-21 1.3E-25 210.8 17.0 139 437-583 110-250 (479)
28 1s2m_A Putative ATP-dependent 99.9 6.4E-21 2.2E-25 203.1 16.7 146 437-593 39-189 (400)
29 2z0m_A 337AA long hypothetical 99.8 5.5E-21 1.9E-25 198.0 14.8 143 437-596 12-158 (337)
30 3oiy_A Reverse gyrase helicase 99.8 3.5E-21 1.2E-25 206.9 13.8 154 424-596 6-180 (414)
31 1fuu_A Yeast initiation factor 99.8 4E-21 1.4E-25 203.6 12.6 148 437-595 39-190 (394)
32 3eiq_A Eukaryotic initiation f 99.8 5E-21 1.7E-25 204.4 13.2 148 437-595 58-211 (414)
33 1hv8_A Putative ATP-dependent 99.8 1.4E-20 4.6E-25 197.1 14.7 147 437-594 24-174 (367)
34 1xti_A Probable ATP-dependent 99.8 2.3E-20 7.7E-25 197.8 15.3 145 437-592 26-178 (391)
35 3pey_A ATP-dependent RNA helic 99.8 3.2E-20 1.1E-24 196.2 16.4 145 437-592 23-171 (395)
36 4a2p_A RIG-I, retinoic acid in 99.8 8.7E-20 3E-24 202.3 15.6 149 439-597 5-157 (556)
37 3tbk_A RIG-I helicase domain; 99.8 1.3E-19 4.6E-24 200.4 16.6 147 441-597 4-154 (555)
38 2xgj_A ATP-dependent RNA helic 99.8 1.2E-19 4.1E-24 215.4 16.0 136 438-596 84-221 (1010)
39 3l9o_A ATP-dependent RNA helic 99.8 5.5E-20 1.9E-24 220.1 12.7 138 438-597 181-320 (1108)
40 3b6e_A Interferon-induced heli 99.8 1E-19 3.6E-24 176.9 12.4 139 438-582 30-176 (216)
41 1rif_A DAR protein, DNA helica 99.8 3.7E-20 1.3E-24 189.3 9.1 154 424-595 92-249 (282)
42 3fho_A ATP-dependent RNA helic 99.8 4.2E-20 1.4E-24 204.7 10.1 148 437-595 137-288 (508)
43 2ykg_A Probable ATP-dependent 99.8 3.8E-19 1.3E-23 203.6 17.9 151 437-597 9-163 (696)
44 1gku_B Reverse gyrase, TOP-RG; 99.8 1.3E-19 4.5E-24 216.4 13.0 149 426-595 44-201 (1054)
45 4a2q_A RIG-I, retinoic acid in 99.8 4E-19 1.4E-23 207.0 16.7 151 437-597 244-398 (797)
46 4a4z_A Antiviral helicase SKI2 99.8 9.6E-19 3.3E-23 207.5 13.9 139 438-597 37-177 (997)
47 4ddu_A Reverse gyrase; topoiso 99.8 2E-18 7E-23 206.5 15.1 149 429-596 68-237 (1104)
48 4a2w_A RIG-I, retinoic acid in 99.8 3.5E-18 1.2E-22 202.1 15.2 151 437-597 244-398 (936)
49 2v1x_A ATP-dependent DNA helic 99.8 1.1E-18 3.9E-23 196.5 10.4 144 428-590 32-190 (591)
50 2oca_A DAR protein, ATP-depend 99.7 3.4E-18 1.2E-22 188.7 9.4 153 424-594 92-248 (510)
51 4gl2_A Interferon-induced heli 99.7 3.8E-18 1.3E-22 195.4 9.1 135 441-582 7-150 (699)
52 1gm5_A RECG; helicase, replica 99.7 2.5E-17 8.4E-22 190.3 14.7 128 437-582 365-504 (780)
53 1oyw_A RECQ helicase, ATP-depe 99.7 1.5E-17 5.2E-22 184.8 12.2 138 431-591 16-165 (523)
54 1tf5_A Preprotein translocase 99.7 9.3E-18 3.2E-22 191.7 10.0 132 437-583 80-219 (844)
55 2fsf_A Preprotein translocase 99.7 2.5E-17 8.7E-22 187.7 9.9 146 437-597 71-240 (853)
56 1wp9_A ATP-dependent RNA helic 99.7 1.3E-16 4.3E-21 172.0 14.6 129 441-583 9-140 (494)
57 1nkt_A Preprotein translocase 99.6 2.7E-16 9.1E-21 179.7 11.8 131 437-582 108-245 (922)
58 2ipc_A Preprotein translocase 99.6 4.5E-16 1.5E-20 177.3 12.8 132 437-582 76-216 (997)
59 2fz4_A DNA repair protein RAD2 99.6 8.3E-16 2.9E-20 153.5 12.5 115 440-583 92-207 (237)
60 2eyq_A TRCF, transcription-rep 99.6 2E-15 6.7E-20 181.7 17.0 137 437-595 600-748 (1151)
61 2fwr_A DNA repair protein RAD2 99.6 1.4E-15 4.8E-20 166.1 11.8 113 441-582 93-206 (472)
62 3llm_A ATP-dependent RNA helic 99.6 4.1E-15 1.4E-19 147.9 13.9 126 441-580 61-188 (235)
63 2jlq_A Serine protease subunit 99.6 4E-16 1.4E-20 170.2 5.4 135 438-593 1-135 (451)
64 3o8b_A HCV NS3 protease/helica 99.5 1.1E-15 3.9E-20 172.6 3.5 126 446-596 221-346 (666)
65 3crv_A XPD/RAD3 related DNA he 99.5 1E-14 3.5E-19 163.0 10.5 127 441-582 3-187 (551)
66 3h1t_A Type I site-specific re 99.5 1.3E-14 4.4E-19 163.3 8.8 146 440-596 177-330 (590)
67 2whx_A Serine protease/ntpase/ 99.5 7.9E-15 2.7E-19 165.9 5.7 137 439-596 169-305 (618)
68 3rc3_A ATP-dependent RNA helic 99.4 1.4E-13 4.9E-18 156.6 11.0 113 456-596 154-268 (677)
69 2vl7_A XPD; helicase, unknown 99.4 1.4E-13 4.8E-18 153.5 9.0 127 437-581 4-188 (540)
70 2z83_A Helicase/nucleoside tri 99.4 1.1E-13 3.9E-18 151.2 8.1 110 451-581 15-125 (459)
71 1yks_A Genome polyprotein [con 99.4 1.5E-13 5E-18 149.5 6.2 101 454-580 5-111 (440)
72 2v6i_A RNA helicase; membrane, 99.4 3.9E-13 1.3E-17 145.8 9.4 104 457-581 2-106 (431)
73 2wv9_A Flavivirin protease NS2 99.4 1.7E-14 5.7E-19 164.5 -2.1 68 441-517 215-292 (673)
74 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 7.2E-13 2.5E-17 157.1 11.4 139 441-595 271-426 (1038)
75 1z63_A Helicase of the SNF2/RA 99.3 3.2E-12 1.1E-16 140.4 11.7 126 441-584 37-165 (500)
76 2xau_A PRE-mRNA-splicing facto 99.3 2.4E-12 8.4E-17 149.0 10.5 126 440-579 92-219 (773)
77 3dmq_A RNA polymerase-associat 99.2 7.3E-12 2.5E-16 148.6 8.7 130 440-582 152-287 (968)
78 4a15_A XPD helicase, ATP-depen 99.2 1.1E-11 3.8E-16 140.2 7.1 82 441-531 3-87 (620)
79 1z3i_X Similar to RAD54-like; 99.1 1.1E-09 3.9E-14 124.4 14.9 136 441-585 55-209 (644)
80 3mwy_W Chromo domain-containin 99.0 5.8E-10 2E-14 129.9 11.8 128 441-582 236-381 (800)
81 3jux_A Protein translocase sub 98.7 1.1E-07 3.7E-12 107.2 13.0 131 437-581 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 98.6 9E-08 3.1E-12 108.0 8.9 133 443-595 151-286 (608)
83 4b3f_X DNA-binding protein smu 98.2 7.8E-06 2.7E-10 92.8 12.2 68 440-517 188-255 (646)
84 2gk6_A Regulator of nonsense t 98.1 1E-05 3.5E-10 91.5 11.5 69 439-517 178-246 (624)
85 2xzl_A ATP-dependent helicase 98.0 1.4E-05 4.7E-10 92.8 11.5 71 438-518 357-427 (802)
86 3upu_A ATP-dependent DNA helic 98.0 2.7E-05 9.3E-10 84.6 12.3 70 437-515 21-94 (459)
87 2wjy_A Regulator of nonsense t 97.9 3.8E-05 1.3E-09 89.1 11.7 69 439-517 354-422 (800)
88 3e1s_A Exodeoxyribonuclease V, 97.7 5.4E-05 1.8E-09 84.7 8.8 64 441-515 189-252 (574)
89 3lfu_A DNA helicase II; SF1 he 97.2 0.00056 1.9E-08 77.0 8.2 82 440-530 8-91 (647)
90 3cpe_A Terminase, DNA packagin 96.8 0.0063 2.2E-07 68.1 12.6 127 441-591 163-295 (592)
91 1uaa_A REP helicase, protein ( 96.8 0.0016 5.6E-08 73.9 7.8 82 441-531 2-86 (673)
92 2o0j_A Terminase, DNA packagin 96.7 0.01 3.6E-07 62.7 12.3 128 441-592 163-296 (385)
93 1c4o_A DNA nucleotide excision 96.7 0.0042 1.4E-07 70.6 9.7 78 437-530 5-86 (664)
94 1pjr_A PCRA; DNA repair, DNA r 96.6 0.0028 9.5E-08 72.8 7.8 81 440-529 10-92 (724)
95 3u4q_A ATP-dependent helicase/ 96.2 0.0064 2.2E-07 73.9 8.3 126 441-578 10-137 (1232)
96 3vkw_A Replicase large subunit 96.1 0.0091 3.1E-07 64.2 7.8 85 459-581 163-247 (446)
97 2kjq_A DNAA-related protein; s 95.9 0.0079 2.7E-07 54.8 5.3 21 456-476 35-55 (149)
98 2b8t_A Thymidine kinase; deoxy 95.7 0.019 6.7E-07 56.0 7.3 41 456-506 11-51 (223)
99 3bos_A Putative DNA replicatio 95.3 0.063 2.2E-06 51.3 9.6 21 456-476 51-71 (242)
100 2orw_A Thymidine kinase; TMTK, 95.2 0.024 8E-07 53.5 5.9 39 457-505 3-41 (184)
101 1xx6_A Thymidine kinase; NESG, 95.0 0.044 1.5E-06 52.1 7.2 39 457-505 8-46 (191)
102 2v1u_A Cell division control p 94.8 0.046 1.6E-06 56.5 7.3 21 456-476 43-63 (387)
103 3ec2_A DNA replication protein 94.6 0.066 2.3E-06 49.5 7.1 68 438-515 11-86 (180)
104 2dr3_A UPF0273 protein PH0284; 94.4 0.06 2E-06 52.0 6.7 51 455-516 21-71 (247)
105 1l8q_A Chromosomal replication 94.2 0.16 5.6E-06 51.6 9.7 37 457-503 37-73 (324)
106 3te6_A Regulatory protein SIR3 94.0 0.2 6.9E-06 51.5 9.9 45 456-503 44-88 (318)
107 2qby_B CDC6 homolog 3, cell di 93.9 0.12 4E-06 53.6 8.2 20 457-476 45-64 (384)
108 1njg_A DNA polymerase III subu 93.1 2 6.9E-05 40.1 14.9 18 459-476 47-64 (250)
109 2d7d_A Uvrabc system protein B 92.9 0.15 5.1E-06 57.7 7.5 75 441-530 12-90 (661)
110 2z4s_A Chromosomal replication 92.8 0.49 1.7E-05 50.7 11.0 39 457-503 130-168 (440)
111 1fnn_A CDC6P, cell division co 92.8 0.23 7.9E-06 51.3 8.2 35 459-502 46-80 (389)
112 2chg_A Replication factor C sm 92.8 0.76 2.6E-05 42.7 11.2 19 458-476 39-57 (226)
113 3pfi_A Holliday junction ATP-d 92.6 0.43 1.5E-05 48.6 9.9 20 457-476 55-74 (338)
114 3vfd_A Spastin; ATPase, microt 92.5 0.18 6.2E-06 52.9 7.0 20 457-476 148-167 (389)
115 1a5t_A Delta prime, HOLB; zinc 92.2 0.63 2.2E-05 47.7 10.6 35 443-477 4-44 (334)
116 2j9r_A Thymidine kinase; TK1, 91.9 0.46 1.6E-05 45.9 8.5 40 457-506 28-67 (214)
117 2r6a_A DNAB helicase, replicat 91.7 0.31 1E-05 52.4 7.7 40 455-503 201-240 (454)
118 3cmu_A Protein RECA, recombina 91.5 0.23 7.9E-06 62.4 7.2 52 450-511 1415-1471(2050)
119 3u61_B DNA polymerase accessor 91.3 0.53 1.8E-05 47.6 8.8 18 459-476 50-67 (324)
120 1w4r_A Thymidine kinase; type 91.1 0.4 1.4E-05 45.7 6.9 38 457-504 20-57 (195)
121 3n70_A Transport activator; si 90.8 0.16 5.5E-06 45.4 3.7 22 455-476 22-43 (145)
122 3bh0_A DNAB-like replicative h 90.8 0.3 1E-05 49.9 6.2 53 455-518 66-118 (315)
123 2orv_A Thymidine kinase; TP4A 90.7 0.64 2.2E-05 45.5 8.2 40 457-506 19-58 (234)
124 1xp8_A RECA protein, recombina 90.7 0.26 8.7E-06 51.7 5.7 42 456-507 73-114 (366)
125 1jr3_A DNA polymerase III subu 90.6 2.2 7.4E-05 43.6 12.7 18 459-476 40-57 (373)
126 1hqc_A RUVB; extended AAA-ATPa 90.5 0.41 1.4E-05 48.2 7.0 20 457-476 38-57 (324)
127 2w58_A DNAI, primosome compone 90.5 0.57 2E-05 43.8 7.5 24 458-482 55-78 (202)
128 3co5_A Putative two-component 90.5 0.17 6E-06 45.1 3.7 21 455-475 25-45 (143)
129 2q6t_A DNAB replication FORK h 90.4 0.42 1.4E-05 51.2 7.2 50 456-515 199-248 (444)
130 1sxj_A Activator 1 95 kDa subu 90.2 0.53 1.8E-05 51.4 8.0 20 457-476 77-96 (516)
131 1u94_A RECA protein, recombina 89.9 0.16 5.5E-06 53.0 3.3 42 456-507 62-103 (356)
132 2zr9_A Protein RECA, recombina 89.0 0.27 9.3E-06 51.1 4.2 42 456-507 60-101 (349)
133 2zpa_A Uncharacterized protein 89.0 0.59 2E-05 52.7 7.1 104 441-595 175-279 (671)
134 2oap_1 GSPE-2, type II secreti 88.5 0.37 1.3E-05 52.8 5.1 34 441-474 244-277 (511)
135 3e2i_A Thymidine kinase; Zn-bi 87.6 1.4 4.8E-05 42.6 7.9 41 456-506 27-67 (219)
136 3hr8_A Protein RECA; alpha and 87.3 0.39 1.3E-05 50.1 4.1 45 456-510 60-104 (356)
137 1e9r_A Conjugal transfer prote 86.9 0.58 2E-05 49.7 5.3 19 456-474 52-70 (437)
138 2qgz_A Helicase loader, putati 86.2 0.63 2.2E-05 47.3 4.9 26 457-483 152-177 (308)
139 2zts_A Putative uncharacterize 85.5 0.53 1.8E-05 45.2 3.8 52 456-517 29-80 (251)
140 3hjh_A Transcription-repair-co 85.2 2.6 9E-05 45.6 9.5 52 456-520 13-64 (483)
141 3io5_A Recombination and repai 84.7 1.6 5.4E-05 44.9 7.0 92 457-581 29-124 (333)
142 1p9r_A General secretion pathw 84.7 1.2 4.1E-05 47.4 6.3 39 443-482 152-191 (418)
143 4ag6_A VIRB4 ATPase, type IV s 84.6 0.82 2.8E-05 47.8 5.0 26 456-481 34-59 (392)
144 2gno_A DNA polymerase III, gam 84.3 3.4 0.00012 41.8 9.4 18 459-476 20-37 (305)
145 1qvr_A CLPB protein; coiled co 84.3 1.5 5.2E-05 50.9 7.5 20 457-476 191-210 (854)
146 1tue_A Replication protein E1; 84.1 2 7E-05 41.2 7.0 90 458-552 59-157 (212)
147 2bjv_A PSP operon transcriptio 83.7 0.68 2.3E-05 45.4 3.7 22 455-476 27-48 (265)
148 3cmw_A Protein RECA, recombina 82.5 1.7 5.9E-05 53.9 7.3 86 457-582 1431-1523(1706)
149 1ofh_A ATP-dependent HSL prote 82.4 1.7 5.9E-05 43.1 6.1 20 457-476 50-69 (310)
150 2p6n_A ATP-dependent RNA helic 82.3 5.6 0.00019 37.0 9.4 68 495-574 54-128 (191)
151 2hjv_A ATP-dependent RNA helic 82.3 3.6 0.00012 37.1 7.8 69 495-575 35-110 (163)
152 1jbk_A CLPB protein; beta barr 81.9 0.8 2.7E-05 41.4 3.2 20 457-476 43-62 (195)
153 2w0m_A SSO2452; RECA, SSPF, un 81.4 1.4 4.9E-05 41.5 4.9 23 456-478 22-44 (235)
154 2r44_A Uncharacterized protein 81.3 1.6 5.3E-05 44.3 5.4 23 454-476 43-65 (331)
155 3eaq_A Heat resistant RNA depe 81.0 4.2 0.00014 38.5 8.1 53 494-550 30-89 (212)
156 1w36_B RECB, exodeoxyribonucle 80.9 2.2 7.5E-05 51.5 7.3 63 458-520 17-81 (1180)
157 2gza_A Type IV secretion syste 80.8 1.1 3.7E-05 46.6 4.1 25 451-475 169-193 (361)
158 3trf_A Shikimate kinase, SK; a 80.5 0.76 2.6E-05 42.2 2.5 20 457-476 5-24 (185)
159 1g5t_A COB(I)alamin adenosyltr 80.4 1.7 5.9E-05 41.3 5.0 40 456-505 27-66 (196)
160 2px0_A Flagellar biosynthesis 80.1 2.8 9.5E-05 42.3 6.7 21 456-476 104-124 (296)
161 2p65_A Hypothetical protein PF 79.9 0.78 2.7E-05 41.5 2.4 20 457-476 43-62 (187)
162 1fuk_A Eukaryotic initiation f 79.7 7.2 0.00025 35.0 8.9 52 495-550 30-88 (165)
163 1ojl_A Transcriptional regulat 79.7 1 3.5E-05 45.5 3.4 22 455-476 23-44 (304)
164 3i5x_A ATP-dependent RNA helic 79.4 11 0.00037 41.0 11.8 74 494-576 338-418 (563)
165 3lw7_A Adenylate kinase relate 79.3 0.82 2.8E-05 40.9 2.3 18 459-476 3-20 (179)
166 3vaa_A Shikimate kinase, SK; s 79.2 0.88 3E-05 42.6 2.6 21 456-476 24-44 (199)
167 2rb4_A ATP-dependent RNA helic 79.2 5 0.00017 36.5 7.7 69 494-574 33-108 (175)
168 1qhx_A CPT, protein (chloramph 79.1 0.91 3.1E-05 41.3 2.5 20 457-476 3-22 (178)
169 3syl_A Protein CBBX; photosynt 79.0 0.83 2.9E-05 45.6 2.4 20 457-476 67-86 (309)
170 2cvh_A DNA repair and recombin 79.0 1.3 4.6E-05 41.5 3.8 36 456-504 19-54 (220)
171 1kgd_A CASK, peripheral plasma 78.2 1.3 4.3E-05 40.9 3.2 21 456-476 4-24 (180)
172 3a8t_A Adenylate isopentenyltr 78.1 0.86 3E-05 47.1 2.2 20 457-476 40-59 (339)
173 2eyu_A Twitching motility prot 77.8 1 3.5E-05 44.6 2.6 22 454-475 22-43 (261)
174 2pt7_A CAG-ALFA; ATPase, prote 77.7 1.4 4.7E-05 45.3 3.6 23 451-473 165-187 (330)
175 3foz_A TRNA delta(2)-isopenten 77.7 0.98 3.3E-05 46.2 2.4 18 459-476 12-29 (316)
176 2ze6_A Isopentenyl transferase 77.6 0.94 3.2E-05 44.5 2.3 18 459-476 3-20 (253)
177 3tau_A Guanylate kinase, GMP k 77.4 1.3 4.5E-05 41.8 3.2 21 456-476 7-27 (208)
178 3dm5_A SRP54, signal recogniti 77.2 3.8 0.00013 43.9 7.0 58 457-527 100-159 (443)
179 2qz4_A Paraplegin; AAA+, SPG7, 77.0 1.1 3.7E-05 43.5 2.5 21 456-476 38-58 (262)
180 1kag_A SKI, shikimate kinase I 76.9 1.2 4.2E-05 40.2 2.7 21 456-476 3-23 (173)
181 3hws_A ATP-dependent CLP prote 76.8 1.1 3.8E-05 46.3 2.7 21 456-476 50-70 (363)
182 3exa_A TRNA delta(2)-isopenten 76.8 1.1 3.7E-05 46.0 2.4 19 458-476 4-22 (322)
183 3sqw_A ATP-dependent RNA helic 76.5 14 0.00047 40.5 11.6 74 494-576 287-367 (579)
184 3h4m_A Proteasome-activating n 76.3 1.1 3.8E-05 44.2 2.4 21 456-476 50-70 (285)
185 1n0w_A DNA repair protein RAD5 76.3 1.9 6.5E-05 41.1 4.0 46 456-505 23-68 (243)
186 2z43_A DNA repair and recombin 76.3 2.3 7.8E-05 43.3 4.8 56 456-515 106-162 (324)
187 3iij_A Coilin-interacting nucl 76.2 1.3 4.5E-05 40.5 2.7 21 456-476 10-30 (180)
188 1ex7_A Guanylate kinase; subst 76.1 1.3 4.4E-05 41.7 2.7 17 458-474 2-18 (186)
189 3nbx_X ATPase RAVA; AAA+ ATPas 76.0 3.2 0.00011 45.2 6.1 28 448-476 33-60 (500)
190 3cf0_A Transitional endoplasmi 75.9 1.1 3.9E-05 45.0 2.4 21 456-476 48-68 (301)
191 3b9p_A CG5977-PA, isoform A; A 75.9 1.2 3.9E-05 44.4 2.4 20 457-476 54-73 (297)
192 1zp6_A Hypothetical protein AT 75.7 1 3.5E-05 41.4 1.9 22 455-476 7-28 (191)
193 1cr0_A DNA primase/helicase; R 75.7 2.3 7.9E-05 42.3 4.6 24 455-478 33-56 (296)
194 2jgn_A DBX, DDX3, ATP-dependen 75.4 5.1 0.00018 37.0 6.7 52 494-549 45-103 (185)
195 1d2n_A N-ethylmaleimide-sensit 75.1 1.5 5E-05 43.2 2.9 20 457-476 64-83 (272)
196 1lvg_A Guanylate kinase, GMP k 75.0 1.7 5.8E-05 40.8 3.2 21 456-476 3-23 (198)
197 1lv7_A FTSH; alpha/beta domain 74.8 1.3 4.6E-05 43.0 2.5 20 457-476 45-64 (257)
198 2d7d_A Uvrabc system protein B 74.8 14 0.00047 41.6 11.1 76 494-581 444-526 (661)
199 2qor_A Guanylate kinase; phosp 74.8 1.5 5E-05 41.2 2.7 21 456-476 11-31 (204)
200 1y63_A LMAJ004144AAA protein; 74.7 1.4 4.8E-05 40.7 2.5 21 456-476 9-29 (184)
201 2ehv_A Hypothetical protein PH 74.6 2.4 8.1E-05 40.5 4.2 24 455-478 28-51 (251)
202 3u4q_B ATP-dependent helicase/ 74.4 3.4 0.00012 49.6 6.4 51 461-519 5-55 (1166)
203 1nlf_A Regulatory protein REPA 74.0 6.1 0.00021 38.9 7.2 26 454-479 27-52 (279)
204 2j41_A Guanylate kinase; GMP, 74.0 1.7 5.7E-05 40.4 2.9 21 456-476 5-25 (207)
205 3jvv_A Twitching mobility prot 73.9 1.6 5.5E-05 45.3 3.0 20 455-474 121-140 (356)
206 3kl4_A SRP54, signal recogniti 73.8 4.7 0.00016 43.0 6.6 51 457-517 97-149 (433)
207 1ly1_A Polynucleotide kinase; 73.7 1.4 4.9E-05 39.8 2.3 18 459-476 4-21 (181)
208 3uk6_A RUVB-like 2; hexameric 73.6 1.7 5.9E-05 44.5 3.1 20 457-476 70-89 (368)
209 1um8_A ATP-dependent CLP prote 73.4 1.5 5.3E-05 45.3 2.7 20 457-476 72-91 (376)
210 1t5i_A C_terminal domain of A 73.0 7.7 0.00026 35.3 7.1 52 495-550 31-89 (172)
211 3crm_A TRNA delta(2)-isopenten 72.9 1.5 5.2E-05 45.0 2.4 19 458-476 6-24 (323)
212 3tr0_A Guanylate kinase, GMP k 72.9 2.1 7.1E-05 39.7 3.2 22 455-476 5-26 (205)
213 3kb2_A SPBC2 prophage-derived 72.9 1.5 5.2E-05 39.3 2.2 18 459-476 3-20 (173)
214 3bgw_A DNAB-like replicative h 72.8 3 0.0001 44.6 4.9 39 455-503 195-233 (444)
215 3eie_A Vacuolar protein sortin 72.6 1.6 5.4E-05 44.4 2.5 20 457-476 51-70 (322)
216 2bwj_A Adenylate kinase 5; pho 72.5 2.1 7.1E-05 39.5 3.1 22 455-476 10-31 (199)
217 3d3q_A TRNA delta(2)-isopenten 72.4 1.6 5.5E-05 45.1 2.5 18 459-476 9-26 (340)
218 2ius_A DNA translocase FTSK; n 72.2 4.5 0.00015 44.1 6.1 28 456-483 166-193 (512)
219 2qmh_A HPR kinase/phosphorylas 72.2 1.8 6.3E-05 41.3 2.6 20 457-476 34-53 (205)
220 1kht_A Adenylate kinase; phosp 72.1 1.8 6.1E-05 39.6 2.5 20 457-476 3-22 (192)
221 2r62_A Cell division protease 71.8 1.2 4.1E-05 43.6 1.3 20 457-476 44-63 (268)
222 2ewv_A Twitching motility prot 71.7 1.7 5.9E-05 45.3 2.6 21 455-475 134-154 (372)
223 4eun_A Thermoresistant glucoki 71.7 1.8 6.3E-05 40.4 2.6 21 456-476 28-48 (200)
224 1g8p_A Magnesium-chelatase 38 71.4 1.7 5.7E-05 44.1 2.3 21 456-476 44-64 (350)
225 2c95_A Adenylate kinase 1; tra 71.4 2.4 8.3E-05 38.9 3.3 22 455-476 7-28 (196)
226 1knq_A Gluconate kinase; ALFA/ 71.2 1.6 5.6E-05 39.5 2.0 20 457-476 8-27 (175)
227 1iqp_A RFCS; clamp loader, ext 71.2 3.9 0.00013 40.7 5.0 28 449-476 36-65 (327)
228 1sxj_D Activator 1 41 kDa subu 70.7 3.2 0.00011 42.0 4.3 19 458-476 59-77 (353)
229 3a00_A Guanylate kinase, GMP k 70.6 2.6 8.9E-05 38.9 3.3 18 458-475 2-19 (186)
230 3ney_A 55 kDa erythrocyte memb 70.5 2.6 8.7E-05 40.0 3.2 21 456-476 18-38 (197)
231 4gp7_A Metallophosphoesterase; 70.3 1.7 5.7E-05 39.8 1.9 21 456-476 8-28 (171)
232 1f2t_A RAD50 ABC-ATPase; DNA d 70.3 1.9 6.7E-05 38.6 2.3 17 459-475 25-41 (149)
233 1c9k_A COBU, adenosylcobinamid 70.3 2.6 8.8E-05 39.5 3.2 44 460-517 2-45 (180)
234 4a1f_A DNAB helicase, replicat 70.1 4 0.00014 42.1 4.9 51 455-516 44-94 (338)
235 3t15_A Ribulose bisphosphate c 70.1 1.9 6.5E-05 43.2 2.4 20 457-476 36-55 (293)
236 2yvu_A Probable adenylyl-sulfa 70.0 3.9 0.00013 37.5 4.4 21 456-476 12-32 (186)
237 1c4o_A DNA nucleotide excision 70.0 21 0.00071 40.1 11.2 75 494-580 438-519 (664)
238 4fcw_A Chaperone protein CLPB; 69.9 1.8 6.1E-05 43.1 2.2 19 458-476 48-66 (311)
239 1xwi_A SKD1 protein; VPS4B, AA 69.9 2.4 8.2E-05 43.1 3.1 20 457-476 45-64 (322)
240 3i32_A Heat resistant RNA depe 69.8 13 0.00044 37.4 8.6 51 495-549 28-85 (300)
241 1in4_A RUVB, holliday junction 69.4 3.7 0.00013 41.8 4.5 19 458-476 52-70 (334)
242 3cm0_A Adenylate kinase; ATP-b 69.4 1.6 5.5E-05 39.9 1.5 21 456-476 3-23 (186)
243 3b85_A Phosphate starvation-in 69.1 5.1 0.00017 38.1 5.1 32 443-475 9-40 (208)
244 3uie_A Adenylyl-sulfate kinase 69.1 1.9 6.5E-05 40.3 2.0 34 441-476 11-44 (200)
245 1z6g_A Guanylate kinase; struc 69.0 2.9 0.0001 39.8 3.4 21 455-475 21-41 (218)
246 2qp9_X Vacuolar protein sortin 69.0 2.7 9.3E-05 43.4 3.3 20 457-476 84-103 (355)
247 3eph_A TRNA isopentenyltransfe 68.8 2 6.9E-05 45.5 2.3 18 459-476 4-21 (409)
248 1v5w_A DMC1, meiotic recombina 68.7 4 0.00014 41.9 4.5 47 456-506 121-167 (343)
249 2c9o_A RUVB-like 1; hexameric 68.5 2.6 8.9E-05 45.1 3.2 20 457-476 63-82 (456)
250 3t61_A Gluconokinase; PSI-biol 68.5 2.2 7.4E-05 39.8 2.3 20 457-476 18-37 (202)
251 2bdt_A BH3686; alpha-beta prot 68.2 1.7 5.9E-05 40.0 1.5 19 458-476 3-21 (189)
252 1u0j_A DNA replication protein 68.2 3.9 0.00013 40.7 4.2 36 441-476 83-123 (267)
253 1s96_A Guanylate kinase, GMP k 68.2 2.4 8.2E-05 40.7 2.6 22 455-476 14-35 (219)
254 1ixz_A ATP-dependent metallopr 68.1 2.3 7.9E-05 41.2 2.5 19 458-476 50-68 (254)
255 2rhm_A Putative kinase; P-loop 68.0 2 6.9E-05 39.3 1.9 20 457-476 5-24 (193)
256 1vma_A Cell division protein F 67.6 7.8 0.00027 39.2 6.4 21 456-476 103-123 (306)
257 3d8b_A Fidgetin-like protein 1 67.6 2.9 9.8E-05 43.2 3.2 21 456-476 116-136 (357)
258 2i1q_A DNA repair and recombin 67.2 5.7 0.00019 40.1 5.3 61 456-516 97-164 (322)
259 1gvn_B Zeta; postsegregational 67.1 2.3 7.8E-05 42.6 2.2 20 457-476 33-52 (287)
260 2iyv_A Shikimate kinase, SK; t 67.0 2.8 9.5E-05 38.3 2.7 19 458-476 3-21 (184)
261 1sxj_C Activator 1 40 kDa subu 67.0 5.6 0.00019 40.3 5.3 28 449-476 36-65 (340)
262 3auy_A DNA double-strand break 66.6 2.3 7.8E-05 44.2 2.2 19 458-476 26-44 (371)
263 1via_A Shikimate kinase; struc 66.5 2.7 9.4E-05 38.1 2.5 18 459-476 6-23 (175)
264 2r8r_A Sensor protein; KDPD, P 66.4 5.5 0.00019 38.7 4.7 22 459-480 8-29 (228)
265 3fb4_A Adenylate kinase; psych 66.2 2.5 8.6E-05 39.7 2.2 18 459-476 2-19 (216)
266 2i4i_A ATP-dependent RNA helic 66.0 14 0.00049 37.9 8.2 69 494-574 275-350 (417)
267 1zuh_A Shikimate kinase; alpha 65.9 2.8 9.5E-05 37.7 2.4 19 458-476 8-26 (168)
268 3ice_A Transcription terminati 65.8 11 0.00038 39.7 7.2 35 442-476 157-193 (422)
269 2iut_A DNA translocase FTSK; n 65.8 7.3 0.00025 43.0 6.1 29 456-484 213-241 (574)
270 3kta_A Chromosome segregation 65.6 3.5 0.00012 37.5 3.0 18 459-476 28-45 (182)
271 1zd8_A GTP:AMP phosphotransfer 65.6 2.8 9.5E-05 39.9 2.4 21 456-476 6-26 (227)
272 4b4t_M 26S protease regulatory 65.5 2.7 9.3E-05 44.9 2.5 20 457-476 215-234 (434)
273 1tev_A UMP-CMP kinase; ploop, 65.4 2.7 9.4E-05 38.3 2.3 20 457-476 3-22 (196)
274 3qf7_A RAD50; ABC-ATPase, ATPa 65.3 3.3 0.00011 43.0 3.1 18 459-476 25-42 (365)
275 3dl0_A Adenylate kinase; phosp 65.3 2.7 9.2E-05 39.6 2.2 18 459-476 2-19 (216)
276 2r2a_A Uncharacterized protein 65.0 3.9 0.00013 38.7 3.3 22 459-480 7-28 (199)
277 1e6c_A Shikimate kinase; phosp 64.6 3.2 0.00011 37.3 2.5 19 458-476 3-21 (173)
278 1zak_A Adenylate kinase; ATP:A 64.3 3.1 0.00011 39.4 2.5 20 457-476 5-24 (222)
279 4akg_A Glutathione S-transfera 64.3 3.8 0.00013 53.3 4.0 26 449-474 1259-1284(2695)
280 2chq_A Replication factor C sm 64.2 4.7 0.00016 39.9 3.9 18 459-476 40-57 (319)
281 1aky_A Adenylate kinase; ATP:A 64.1 3.2 0.00011 39.2 2.6 21 456-476 3-23 (220)
282 1znw_A Guanylate kinase, GMP k 64.0 4.1 0.00014 38.2 3.3 21 455-475 18-38 (207)
283 1nks_A Adenylate kinase; therm 63.9 2.9 0.0001 38.0 2.2 18 459-476 3-20 (194)
284 1ry6_A Internal kinesin; kines 63.8 4.8 0.00016 41.9 4.0 23 453-475 79-103 (360)
285 3fht_A ATP-dependent RNA helic 63.8 13 0.00046 37.9 7.5 68 495-574 266-340 (412)
286 4b4t_J 26S protease regulatory 63.7 3.2 0.00011 43.9 2.6 20 457-476 182-201 (405)
287 2eyq_A TRCF, transcription-rep 63.6 13 0.00043 44.7 8.1 77 494-580 811-894 (1151)
288 2cdn_A Adenylate kinase; phosp 63.5 3.4 0.00011 38.4 2.5 20 457-476 20-39 (201)
289 1qf9_A UMP/CMP kinase, protein 63.4 3.1 0.0001 37.9 2.2 19 458-476 7-25 (194)
290 2v54_A DTMP kinase, thymidylat 63.4 3.4 0.00012 38.2 2.6 21 456-476 3-23 (204)
291 2pez_A Bifunctional 3'-phospho 62.9 3 0.0001 37.9 2.0 21 456-476 4-24 (179)
292 3k1j_A LON protease, ATP-depen 62.9 5.6 0.00019 44.2 4.6 27 450-476 53-79 (604)
293 1wp9_A ATP-dependent RNA helic 62.9 28 0.00096 35.9 9.9 52 494-549 360-426 (494)
294 3c8u_A Fructokinase; YP_612366 62.4 3 0.0001 39.2 2.0 19 456-474 21-39 (208)
295 3lda_A DNA repair protein RAD5 62.4 7.2 0.00024 41.1 5.1 47 455-505 176-222 (400)
296 1xjc_A MOBB protein homolog; s 62.3 7.5 0.00026 35.8 4.6 16 459-474 6-21 (169)
297 1iy2_A ATP-dependent metallopr 62.0 4.4 0.00015 39.9 3.2 19 458-476 74-92 (278)
298 4b4t_L 26S protease subunit RP 62.0 3.4 0.00012 44.1 2.5 20 457-476 215-234 (437)
299 2pt5_A Shikimate kinase, SK; a 61.9 3.6 0.00012 36.7 2.4 18 459-476 2-19 (168)
300 3lnc_A Guanylate kinase, GMP k 61.6 3.1 0.00011 39.7 1.9 21 456-476 26-46 (231)
301 4b4t_K 26S protease regulatory 61.6 3.5 0.00012 43.9 2.5 20 457-476 206-225 (428)
302 2zan_A Vacuolar protein sortin 61.6 4.2 0.00014 43.3 3.2 20 457-476 167-186 (444)
303 4a74_A DNA repair and recombin 61.5 3.7 0.00013 38.5 2.5 22 455-476 23-44 (231)
304 3hu3_A Transitional endoplasmi 61.4 3.5 0.00012 44.7 2.5 21 456-476 237-257 (489)
305 2bbw_A Adenylate kinase 4, AK4 61.4 3.8 0.00013 39.5 2.6 20 457-476 27-46 (246)
306 3asz_A Uridine kinase; cytidin 61.3 3.6 0.00012 38.4 2.3 21 456-476 5-25 (211)
307 1cke_A CK, MSSA, protein (cyti 61.3 4.2 0.00014 38.3 2.8 20 457-476 5-24 (227)
308 3pxg_A Negative regulator of g 61.2 3.5 0.00012 44.3 2.4 21 456-476 200-220 (468)
309 3qkt_A DNA double-strand break 61.1 3.4 0.00012 42.2 2.3 17 459-475 25-41 (339)
310 3pey_A ATP-dependent RNA helic 61.1 16 0.00056 36.9 7.5 73 494-578 242-321 (395)
311 3o8b_A HCV NS3 protease/helica 60.9 12 0.0004 42.2 6.7 67 494-573 395-461 (666)
312 1ukz_A Uridylate kinase; trans 60.8 3.7 0.00013 38.1 2.3 17 458-474 16-32 (203)
313 3pvs_A Replication-associated 60.7 4.3 0.00015 43.4 3.1 19 458-476 51-69 (447)
314 1q57_A DNA primase/helicase; d 60.7 4.6 0.00016 43.7 3.3 51 455-515 240-290 (503)
315 1g41_A Heat shock protein HSLU 60.6 3.9 0.00013 43.8 2.7 20 457-476 50-69 (444)
316 2qby_A CDC6 homolog 1, cell di 60.3 4.8 0.00017 40.8 3.2 20 457-476 45-64 (386)
317 1rj9_A FTSY, signal recognitio 60.1 8.3 0.00029 38.9 4.9 20 456-475 101-120 (304)
318 1oyw_A RECQ helicase, ATP-depe 59.9 19 0.00066 39.0 8.2 53 494-550 235-294 (523)
319 1nn5_A Similar to deoxythymidy 59.9 4.1 0.00014 37.9 2.4 21 456-476 8-28 (215)
320 2qt1_A Nicotinamide riboside k 59.8 3.9 0.00013 38.1 2.3 21 456-476 20-40 (207)
321 2plr_A DTMP kinase, probable t 59.8 3.7 0.00013 38.1 2.0 20 457-476 4-23 (213)
322 2v1x_A ATP-dependent DNA helic 59.7 41 0.0014 37.1 10.9 53 494-550 266-325 (591)
323 2wwf_A Thymidilate kinase, put 59.6 4.2 0.00014 37.8 2.4 21 456-476 9-29 (212)
324 1x4q_A U4/U6 small nuclear rib 59.6 12 0.00041 30.9 4.9 55 227-286 19-73 (92)
325 3e70_C DPA, signal recognition 59.6 12 0.00043 38.1 6.2 19 456-474 128-146 (328)
326 1e4v_A Adenylate kinase; trans 59.3 3.9 0.00013 38.5 2.1 18 459-476 2-19 (214)
327 2if2_A Dephospho-COA kinase; a 59.3 4 0.00014 37.9 2.2 18 459-476 3-20 (204)
328 3a4m_A L-seryl-tRNA(SEC) kinas 59.2 4 0.00014 40.0 2.3 20 457-476 4-23 (260)
329 3b9q_A Chloroplast SRP recepto 59.2 7.6 0.00026 39.2 4.4 20 456-475 99-118 (302)
330 2x8a_A Nuclear valosin-contain 59.1 4 0.00014 40.5 2.3 19 458-476 45-63 (274)
331 2jaq_A Deoxyguanosine kinase; 59.0 4.3 0.00015 37.3 2.4 18 459-476 2-19 (205)
332 2pbr_A DTMP kinase, thymidylat 58.5 4.3 0.00015 37.0 2.3 18 459-476 2-19 (195)
333 3qks_A DNA double-strand break 58.4 5.7 0.00019 37.4 3.1 18 458-475 24-41 (203)
334 2db3_A ATP-dependent RNA helic 58.4 24 0.00083 36.9 8.4 66 497-574 302-374 (434)
335 3nwj_A ATSK2; P loop, shikimat 58.3 5.3 0.00018 39.2 3.0 20 457-476 48-67 (250)
336 1sxj_B Activator 1 37 kDa subu 58.3 9.1 0.00031 37.8 4.8 18 459-476 44-61 (323)
337 1m7g_A Adenylylsulfate kinase; 58.1 4 0.00014 38.3 2.0 33 442-476 12-44 (211)
338 1ak2_A Adenylate kinase isoenz 58.0 4.7 0.00016 38.6 2.5 20 457-476 16-35 (233)
339 4b4t_H 26S protease regulatory 57.6 4.1 0.00014 43.8 2.2 20 457-476 243-262 (467)
340 1jjv_A Dephospho-COA kinase; P 57.4 4.6 0.00016 37.6 2.3 18 459-476 4-21 (206)
341 3nwn_A Kinesin-like protein KI 57.4 5 0.00017 41.7 2.7 16 459-474 107-122 (359)
342 2vli_A Antibiotic resistance p 57.4 3.4 0.00012 37.4 1.3 20 457-476 5-24 (183)
343 2p5t_B PEZT; postsegregational 57.2 3.2 0.00011 40.5 1.1 20 457-476 32-51 (253)
344 3be4_A Adenylate kinase; malar 57.2 5.2 0.00018 37.8 2.7 20 457-476 5-24 (217)
345 3vkg_A Dynein heavy chain, cyt 56.9 5.9 0.0002 52.2 3.8 25 449-473 1296-1320(3245)
346 3cmw_A Protein RECA, recombina 56.8 8.4 0.00029 48.0 5.0 42 456-507 33-74 (1706)
347 3dc4_A Kinesin-like protein NO 56.7 5.9 0.0002 40.9 3.1 16 459-474 97-112 (344)
348 2j0s_A ATP-dependent RNA helic 56.7 21 0.00072 36.5 7.5 68 495-574 276-350 (410)
349 2v9p_A Replication protein E1; 56.6 6.1 0.00021 40.0 3.2 22 455-476 124-145 (305)
350 1zu4_A FTSY; GTPase, signal re 56.6 9.2 0.00031 38.9 4.5 21 456-476 104-124 (320)
351 1ye8_A Protein THEP1, hypothet 56.5 6.4 0.00022 36.3 3.1 16 459-474 2-17 (178)
352 4e22_A Cytidylate kinase; P-lo 56.3 5.8 0.0002 38.6 2.9 21 456-476 26-46 (252)
353 1bg2_A Kinesin; motor protein, 56.1 5.6 0.00019 40.7 2.8 16 459-474 80-95 (325)
354 2qen_A Walker-type ATPase; unk 56.0 8.9 0.0003 38.3 4.3 32 444-475 18-49 (350)
355 2z0h_A DTMP kinase, thymidylat 55.7 5.1 0.00018 36.6 2.3 17 460-476 3-19 (197)
356 1sxj_E Activator 1 40 kDa subu 55.6 5.6 0.00019 40.3 2.8 19 458-476 37-55 (354)
357 3cmu_A Protein RECA, recombina 55.3 9 0.00031 48.4 4.9 46 456-512 1080-1125(2050)
358 1uf9_A TT1252 protein; P-loop, 55.3 5.7 0.00019 36.5 2.5 19 458-476 9-27 (203)
359 2ce7_A Cell division protein F 55.2 5.1 0.00018 43.3 2.5 20 457-476 49-68 (476)
360 3pxi_A Negative regulator of g 55.1 4.9 0.00017 45.8 2.4 21 456-476 200-220 (758)
361 3m6a_A ATP-dependent protease 54.9 5.1 0.00017 44.0 2.4 20 457-476 108-127 (543)
362 2i3b_A HCR-ntpase, human cance 54.8 7.7 0.00026 36.2 3.3 19 457-475 1-19 (189)
363 3tif_A Uncharacterized ABC tra 54.8 5.7 0.00019 38.5 2.5 19 455-473 29-47 (235)
364 2zfi_A Kinesin-like protein KI 54.6 5.7 0.00019 41.4 2.6 16 459-474 92-107 (366)
365 1goj_A Kinesin, kinesin heavy 54.6 6.1 0.00021 41.0 2.8 16 459-474 83-98 (355)
366 3bfn_A Kinesin-like protein KI 54.4 6.7 0.00023 41.2 3.1 19 456-474 96-116 (388)
367 3tlx_A Adenylate kinase 2; str 54.2 5.4 0.00018 38.6 2.2 21 456-476 28-48 (243)
368 1tf7_A KAIC; homohexamer, hexa 54.1 8.9 0.0003 41.7 4.2 28 456-483 38-65 (525)
369 2wbe_C Bipolar kinesin KRP-130 54.1 6.8 0.00023 40.9 3.1 16 459-474 103-118 (373)
370 2og2_A Putative signal recogni 53.8 10 0.00035 39.3 4.4 20 456-475 156-175 (359)
371 2xxa_A Signal recognition part 53.6 19 0.00064 38.3 6.5 50 457-515 100-151 (433)
372 3b6u_A Kinesin-like protein KI 53.6 5.9 0.0002 41.4 2.5 16 459-474 104-119 (372)
373 2xb4_A Adenylate kinase; ATP-b 53.2 5.7 0.0002 37.8 2.2 18 459-476 2-19 (223)
374 1j8m_F SRP54, signal recogniti 53.2 16 0.00055 36.6 5.7 51 457-517 98-150 (297)
375 2y65_A Kinesin, kinesin heavy 53.2 6.9 0.00024 40.7 3.0 16 459-474 87-102 (365)
376 3gbj_A KIF13B protein; kinesin 53.1 7.1 0.00024 40.5 3.0 16 459-474 95-110 (354)
377 1x88_A Kinesin-like protein KI 53.1 6 0.00021 41.1 2.5 19 456-474 86-106 (359)
378 2v3c_C SRP54, signal recogniti 53.0 8.7 0.0003 40.9 3.8 19 458-476 100-118 (432)
379 4a14_A Kinesin, kinesin-like p 52.9 7.1 0.00024 40.3 3.0 16 459-474 86-101 (344)
380 4b4t_I 26S protease regulatory 52.8 7.4 0.00025 41.5 3.1 20 457-476 216-235 (437)
381 3f9v_A Minichromosome maintena 52.7 5.3 0.00018 44.4 2.1 17 459-475 329-345 (595)
382 2owm_A Nckin3-434, related to 52.4 7.4 0.00025 41.6 3.1 16 459-474 139-154 (443)
383 1rz3_A Hypothetical protein rb 52.1 6.1 0.00021 36.8 2.2 20 457-476 22-41 (201)
384 2nr8_A Kinesin-like protein KI 52.0 6.8 0.00023 40.6 2.7 16 459-474 106-121 (358)
385 2qzg_A Conserved uncharacteriz 52.0 99 0.0034 25.4 9.0 81 58-142 8-89 (94)
386 2l8b_A Protein TRAI, DNA helic 52.0 30 0.001 32.4 6.8 63 442-513 35-98 (189)
387 1hv8_A Putative ATP-dependent 51.8 18 0.00063 36.0 5.9 53 494-550 237-296 (367)
388 1vht_A Dephospho-COA kinase; s 51.5 6.5 0.00022 36.9 2.3 19 458-476 5-23 (218)
389 1ltq_A Polynucleotide kinase; 51.5 6.3 0.00021 39.0 2.3 18 459-476 4-21 (301)
390 2vvg_A Kinesin-2; motor protei 51.4 6.3 0.00021 40.8 2.3 16 459-474 92-107 (350)
391 3pxi_A Negative regulator of g 51.1 5.9 0.0002 45.2 2.2 18 459-476 523-540 (758)
392 1ypw_A Transitional endoplasmi 50.8 6 0.0002 45.6 2.2 21 456-476 237-257 (806)
393 2jeo_A Uridine-cytidine kinase 50.6 6.1 0.00021 38.1 2.0 21 456-476 24-44 (245)
394 2grj_A Dephospho-COA kinase; T 50.6 6.9 0.00024 36.6 2.3 19 458-476 13-31 (192)
395 1odf_A YGR205W, hypothetical 3 50.4 7.5 0.00026 39.0 2.6 18 458-475 32-49 (290)
396 1r6b_X CLPA protein; AAA+, N-t 50.1 6.7 0.00023 44.6 2.5 21 456-476 206-226 (758)
397 2f1r_A Molybdopterin-guanine d 50.0 5.2 0.00018 36.8 1.3 18 459-476 4-21 (171)
398 1v8k_A Kinesin-like protein KI 49.7 11 0.00039 39.7 4.0 19 456-474 152-172 (410)
399 3lre_A Kinesin-like protein KI 49.5 6.5 0.00022 40.7 2.1 16 459-474 108-123 (355)
400 1uj2_A Uridine-cytidine kinase 49.4 7.2 0.00025 37.8 2.3 19 458-476 23-41 (252)
401 2ffh_A Protein (FFH); SRP54, s 49.3 23 0.0008 37.5 6.4 50 457-516 98-149 (425)
402 4etp_A Kinesin-like protein KA 49.2 9.4 0.00032 40.2 3.3 25 449-474 132-158 (403)
403 4akg_A Glutathione S-transfera 49.2 16 0.00056 47.5 6.0 20 456-475 922-941 (2695)
404 1xti_A Probable ATP-dependent 49.0 24 0.00081 35.7 6.3 53 494-550 249-308 (391)
405 2xau_A PRE-mRNA-splicing facto 48.8 77 0.0026 36.1 11.1 72 494-573 302-392 (773)
406 1r6b_X CLPA protein; AAA+, N-t 48.6 6.8 0.00023 44.6 2.2 18 459-476 490-507 (758)
407 1sq5_A Pantothenate kinase; P- 48.5 11 0.00038 37.8 3.6 20 456-475 79-98 (308)
408 3ake_A Cytidylate kinase; CMP 48.4 7.8 0.00027 35.7 2.3 18 459-476 4-21 (208)
409 2cbz_A Multidrug resistance-as 48.3 9.2 0.00031 37.0 2.8 20 455-474 29-48 (237)
410 1nij_A Hypothetical protein YJ 48.3 13 0.00045 37.5 4.1 16 459-474 6-21 (318)
411 3sr0_A Adenylate kinase; phosp 48.2 8.7 0.0003 36.4 2.6 18 459-476 2-19 (206)
412 2yhs_A FTSY, cell division pro 48.1 14 0.00046 40.2 4.3 20 456-475 292-311 (503)
413 2v6i_A RNA helicase; membrane, 47.8 18 0.00063 38.0 5.4 52 495-550 171-225 (431)
414 3cob_A Kinesin heavy chain-lik 47.7 9.9 0.00034 39.6 3.1 24 450-474 72-97 (369)
415 1e69_A Chromosome segregation 47.7 6.3 0.00022 39.9 1.6 18 459-476 26-43 (322)
416 3gfo_A Cobalt import ATP-bindi 47.7 8.1 0.00028 38.4 2.4 20 455-474 32-51 (275)
417 1gtv_A TMK, thymidylate kinase 47.4 4.5 0.00015 37.7 0.4 17 460-476 3-19 (214)
418 1np6_A Molybdopterin-guanine d 47.4 18 0.00062 33.2 4.6 17 458-474 7-23 (174)
419 2f6r_A COA synthase, bifunctio 47.3 7.8 0.00027 38.5 2.2 18 459-476 77-94 (281)
420 2yjt_D ATP-dependent RNA helic 52.7 4.1 0.00014 37.0 0.0 53 494-550 29-88 (170)
421 1t5c_A CENP-E protein, centrom 46.9 10 0.00035 39.2 3.0 16 459-474 80-95 (349)
422 1s2m_A Putative ATP-dependent 46.9 26 0.00091 35.6 6.3 53 494-550 257-316 (400)
423 2dhr_A FTSH; AAA+ protein, hex 46.8 8.2 0.00028 41.9 2.4 20 457-476 64-83 (499)
424 1yks_A Genome polyprotein [con 46.6 21 0.00073 37.7 5.6 52 495-550 177-231 (440)
425 1w5s_A Origin recognition comp 46.6 12 0.00042 38.3 3.7 20 457-476 50-71 (412)
426 2pze_A Cystic fibrosis transme 46.2 10 0.00035 36.4 2.8 20 455-474 32-51 (229)
427 2h58_A Kinesin-like protein KI 46.2 11 0.00037 38.6 3.1 25 449-474 72-98 (330)
428 1tvm_A PTS system, galactitol- 46.2 25 0.00084 29.9 4.9 57 495-552 21-79 (113)
429 3nh6_A ATP-binding cassette SU 46.1 7.6 0.00026 39.3 1.9 20 455-474 78-97 (306)
430 2pcj_A ABC transporter, lipopr 46.1 8.9 0.0003 36.7 2.3 20 455-474 28-47 (224)
431 1tf7_A KAIC; homohexamer, hexa 46.1 17 0.00059 39.4 4.9 50 455-515 279-328 (525)
432 2ghi_A Transport protein; mult 46.1 10 0.00035 37.2 2.8 21 455-475 44-64 (260)
433 1sgw_A Putative ABC transporte 45.8 11 0.00037 35.9 2.9 20 455-474 33-52 (214)
434 3u06_A Protein claret segregat 45.8 9.9 0.00034 40.2 2.8 25 449-474 130-156 (412)
435 3of5_A Dethiobiotin synthetase 45.8 19 0.00065 34.5 4.6 18 459-476 6-24 (228)
436 1tq4_A IIGP1, interferon-induc 45.7 15 0.00051 38.9 4.1 18 457-474 69-86 (413)
437 1g6h_A High-affinity branched- 45.7 9.3 0.00032 37.4 2.4 20 455-474 31-50 (257)
438 2ff7_A Alpha-hemolysin translo 45.6 10 0.00036 36.9 2.8 21 455-475 33-53 (247)
439 2vhj_A Ntpase P4, P4; non- hyd 45.6 11 0.00038 38.6 3.0 24 456-479 122-145 (331)
440 1qvr_A CLPB protein; coiled co 45.5 7.5 0.00026 45.0 2.0 19 458-476 589-607 (854)
441 1htw_A HI0065; nucleotide-bind 45.5 11 0.00038 34.1 2.7 20 455-474 31-50 (158)
442 1ls1_A Signal recognition part 45.3 17 0.00059 36.3 4.4 20 457-476 98-117 (295)
443 3aez_A Pantothenate kinase; tr 45.0 8.3 0.00028 39.1 2.0 20 456-475 89-108 (312)
444 3r20_A Cytidylate kinase; stru 44.6 10 0.00035 36.8 2.5 21 456-476 8-28 (233)
445 4g1u_C Hemin import ATP-bindin 44.5 11 0.00038 37.2 2.7 20 455-474 35-54 (266)
446 3v53_A RNA-binding protein 25; 44.3 31 0.0011 29.9 5.2 55 227-286 48-102 (119)
447 1q3t_A Cytidylate kinase; nucl 44.0 12 0.00041 35.7 2.9 21 456-476 15-35 (236)
448 1mv5_A LMRA, multidrug resista 44.0 10 0.00034 36.8 2.3 20 455-474 26-45 (243)
449 3umf_A Adenylate kinase; rossm 44.0 11 0.00038 36.1 2.6 21 456-476 28-48 (217)
450 2zu0_C Probable ATP-dependent 43.8 13 0.00045 36.6 3.2 21 455-475 44-64 (267)
451 2heh_A KIF2C protein; kinesin, 43.7 16 0.00054 38.3 3.9 17 459-475 137-153 (387)
452 1b0u_A Histidine permease; ABC 43.6 11 0.00036 37.1 2.5 20 455-474 30-49 (262)
453 2d2e_A SUFC protein; ABC-ATPas 43.3 13 0.00045 36.1 3.1 21 455-475 27-47 (250)
454 1ji0_A ABC transporter; ATP bi 43.3 12 0.00041 36.2 2.8 20 455-474 30-49 (240)
455 1svm_A Large T antigen; AAA+ f 43.0 14 0.00047 38.6 3.3 21 456-476 168-188 (377)
456 2h92_A Cytidylate kinase; ross 42.9 12 0.00041 34.9 2.7 20 457-476 3-22 (219)
457 3tqf_A HPR(Ser) kinase; transf 42.9 12 0.00041 34.9 2.5 22 457-478 16-37 (181)
458 3zvl_A Bifunctional polynucleo 42.6 10 0.00035 40.0 2.3 20 457-476 258-277 (416)
459 3tqc_A Pantothenate kinase; bi 42.5 10 0.00036 38.6 2.3 17 459-475 94-110 (321)
460 1zd9_A ADP-ribosylation factor 42.4 7.6 0.00026 35.3 1.1 32 442-473 7-38 (188)
461 2yz2_A Putative ABC transporte 41.9 13 0.00045 36.5 2.8 20 455-474 31-50 (266)
462 1a7j_A Phosphoribulokinase; tr 41.7 6.3 0.00022 39.4 0.5 18 459-476 7-24 (290)
463 1vpl_A ABC transporter, ATP-bi 41.7 13 0.00045 36.4 2.8 20 455-474 39-58 (256)
464 2ixe_A Antigen peptide transpo 41.7 13 0.00045 36.7 2.8 20 455-474 43-62 (271)
465 2oca_A DAR protein, ATP-depend 41.6 1.2E+02 0.0042 31.9 10.8 88 495-597 347-441 (510)
466 1w1w_A Structural maintenance 41.6 15 0.0005 38.7 3.3 19 457-475 26-44 (430)
467 2qi9_C Vitamin B12 import ATP- 41.5 13 0.00045 36.2 2.8 20 455-474 24-43 (249)
468 2vp4_A Deoxynucleoside kinase; 41.5 10 0.00036 36.0 2.0 19 456-474 19-37 (230)
469 1f9v_A Kinesin-like protein KA 40.7 12 0.00041 38.6 2.4 19 456-474 82-102 (347)
470 2nq2_C Hypothetical ABC transp 40.6 14 0.00047 36.2 2.7 20 455-474 29-48 (253)
471 2ihy_A ABC transporter, ATP-bi 40.5 14 0.00047 36.8 2.8 20 455-474 45-64 (279)
472 3sop_A Neuronal-specific septi 40.2 11 0.00039 37.1 2.1 16 459-474 4-19 (270)
473 2olj_A Amino acid ABC transpor 40.2 14 0.00049 36.3 2.8 20 455-474 48-67 (263)
474 3t0q_A AGR253WP; kinesin, alph 39.3 13 0.00045 38.3 2.5 24 450-474 78-103 (349)
475 4eaq_A DTMP kinase, thymidylat 39.3 12 0.00041 35.9 2.0 21 456-476 25-45 (229)
476 2o5v_A DNA replication and rep 38.9 16 0.00056 37.7 3.1 18 459-476 28-45 (359)
477 1ihu_A Arsenical pump-driving 38.4 25 0.00085 38.6 4.7 24 457-480 8-31 (589)
478 1pui_A ENGB, probable GTP-bind 38.2 12 0.00042 34.3 1.9 19 456-474 25-43 (210)
479 1pzn_A RAD51, DNA repair and r 38.0 16 0.00056 37.4 2.9 24 455-478 129-152 (349)
480 4edh_A DTMP kinase, thymidylat 37.8 29 0.00098 32.9 4.4 21 456-476 5-25 (213)
481 2bbs_A Cystic fibrosis transme 37.5 16 0.00056 36.5 2.7 21 455-475 62-82 (290)
482 3cf2_A TER ATPase, transitiona 37.3 14 0.00049 42.5 2.5 20 457-476 238-257 (806)
483 2dyk_A GTP-binding protein; GT 37.0 15 0.00052 31.7 2.2 15 459-473 3-17 (161)
484 2jlq_A Serine protease subunit 36.9 38 0.0013 35.7 5.7 52 495-550 188-242 (451)
485 2j37_W Signal recognition part 36.9 27 0.00091 37.9 4.5 48 458-515 102-151 (504)
486 3l0o_A Transcription terminati 36.9 36 0.0012 35.8 5.3 41 442-483 158-200 (427)
487 2ce2_X GTPase HRAS; signaling 36.7 15 0.00052 31.6 2.1 15 459-473 5-19 (166)
488 2pjz_A Hypothetical protein ST 36.6 17 0.0006 35.7 2.8 21 454-475 28-48 (263)
489 3bs4_A Uncharacterized protein 36.1 26 0.00089 34.5 3.9 51 456-517 20-70 (260)
490 2woo_A ATPase GET3; tail-ancho 36.1 30 0.001 35.0 4.5 22 459-480 21-42 (329)
491 3czc_A RMPB; alpha/beta sandwi 36.0 25 0.00087 29.6 3.4 57 495-552 18-77 (110)
492 1ny5_A Transcriptional regulat 35.9 23 0.00079 36.7 3.7 21 455-475 158-178 (387)
493 4a82_A Cystic fibrosis transme 35.8 16 0.00053 40.3 2.5 20 455-474 365-384 (578)
494 3zq6_A Putative arsenical pump 35.8 31 0.0011 34.7 4.6 21 460-480 17-37 (324)
495 1z2a_A RAS-related protein RAB 35.5 17 0.00057 31.6 2.2 17 458-474 6-22 (168)
496 2z83_A Helicase/nucleoside tri 35.5 51 0.0017 34.9 6.5 52 495-550 190-244 (459)
497 2wv9_A Flavivirin protease NS2 35.2 40 0.0014 37.9 5.7 52 495-550 410-464 (673)
498 2ged_A SR-beta, signal recogni 34.7 17 0.00058 32.7 2.2 18 456-473 47-64 (193)
499 1z0j_A RAB-22, RAS-related pro 34.7 17 0.0006 31.6 2.2 16 458-473 7-22 (170)
500 2h17_A ADP-ribosylation factor 34.5 15 0.0005 33.0 1.7 17 457-473 21-37 (181)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.9e-40 Score=403.10 Aligned_cols=228 Identities=47% Similarity=0.842 Sum_probs=209.3
Q ss_pred CCCccccccCCC---CCccccCCcchhhcccCCcceEecCCCCCCCCCCCccccchhhhHHHHHHHhcCCCCCcHHHHHH
Q 007492 373 NPLDGLIGSGQG---SMAVTALPQGTVRKHLKGYEEVIIPPTPTAQMKPGEKLIEIKELDEFAQAAFHGYKSLNRIQSRI 449 (601)
Q Consensus 373 ~~~~~~~~~~~~---~~~~~~lp~~~~~~~~~~~~e~~vp~~~~~~~~~~~~l~~i~~L~~~~~~~f~g~~~l~~iQ~~~ 449 (601)
.+++.+.+.+++ +++++.||+|+.+...++|+|++||++.+.+....+.++++++||+|++.+|.||++||++|++|
T Consensus 8 ~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln~iQs~~ 87 (1724)
T 4f92_B 8 LDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKL 87 (1724)
T ss_dssp CCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCCHHHHHT
T ss_pred ecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcCCCCCCCHHHHHH
Confidence 457888877665 67889999999999999999999999988888888899999999999999999999999999999
Q ss_pred HHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhccc-CCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEE
Q 007492 450 FQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD-GYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRE 528 (601)
Q Consensus 450 i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~-~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~ 528 (601)
||.++++++|+|||||||||||++|+++|++.+.++... +.....++++|||+|+||||+|+++.|.+++..+|++|..
T Consensus 88 ~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~ 167 (1724)
T 4f92_B 88 YRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAE 167 (1724)
T ss_dssp HHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999999999999999999876543 4455678999999999999999999999999999999999
Q ss_pred EeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHHhhhc
Q 007492 529 LTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVY 600 (601)
Q Consensus 529 l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~r~~e 600 (601)
+|||++.+++....++|+|||||+|+.+++++.+..+.+.|++|||||+|+|+|+||+++|.+++|++++++
T Consensus 168 ~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~ 239 (1724)
T 4f92_B 168 LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIE 239 (1724)
T ss_dssp CCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999999887666667899999999999999999999999999988764
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=9.3e-27 Score=287.81 Aligned_cols=168 Identities=33% Similarity=0.571 Sum_probs=147.4
Q ss_pred ccchhhhH-HHHHHHh-cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEE
Q 007492 422 LIEIKELD-EFAQAAF-HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIV 499 (601)
Q Consensus 422 l~~i~~L~-~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl 499 (601)
..+++.|+ +.++..| .+|+.|||+|++||+.++++++|++|+||||||||++|.++|++.+.+ .++.++|
T Consensus 905 plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--------~~~~kav 976 (1724)
T 4f92_B 905 PLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--------SSEGRCV 976 (1724)
T ss_dssp CCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--------CTTCCEE
T ss_pred CCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--------CCCCEEE
Confidence 45777774 3445455 479999999999999999989999999999999999999999999876 2467999
Q ss_pred EEccChhHHHHHHHHHHhhcC-CCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCc
Q 007492 500 YVAPMKALAAEVTRTFSSRLS-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVH 578 (601)
Q Consensus 500 ~laPtraLa~Q~~~~~~~~l~-~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH 578 (601)
||+|+||||.|++..|.+++. .+|++|..++|+.........+++|+|||||+|+.+.+++....+.+.|++|||||+|
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999999998775 4799999999998876666678999999999999999988666666679999999999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q 007492 579 LLNDDRGPVIEALVARTLR 597 (601)
Q Consensus 579 ~l~d~rg~~le~iv~r~~r 597 (601)
+|.+.||++++.+++|+.+
T Consensus 1057 ~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1057 LIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHH
T ss_pred hcCCCCCccHHHHHHHHHH
Confidence 9999999999999999864
No 3
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=227.44 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=129.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||||||++|++|+++.+.... .....+.++|||+||++||.|+++.+.
T Consensus 72 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~~~lil~Pt~~La~q~~~~~~ 147 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---FMPRNGTGVLILSPTRELAMQTFGVLK 147 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTT---CCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhcc---ccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 699999999999999998 6899999999999999999999999887531 112247789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+++...++.+..++|+....... ..+++|+||||++|..+.+......+ ..+++|||||||+|.+ .+++.++.|+
T Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~-~~l~~lViDEah~l~~~~~~~~l~~i~ 226 (262)
T 3ly5_A 148 ELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMY-KNLQCLVIDEADRILDVGFEEELKQII 226 (262)
T ss_dssp HHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCC-TTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred HHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCccc-ccCCEEEEcChHHHhhhhHHHHHHHHH
Confidence 99999999999999988765332 24689999999998555444433333 3589999999999987 6999999998
Q ss_pred HHHHh
Q 007492 593 ARTLR 597 (601)
Q Consensus 593 ~r~~r 597 (601)
.++.+
T Consensus 227 ~~~~~ 231 (262)
T 3ly5_A 227 KLLPT 231 (262)
T ss_dssp HHSCS
T ss_pred HhCCC
Confidence 87653
No 4
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=225.85 Aligned_cols=150 Identities=14% Similarity=0.218 Sum_probs=122.4
Q ss_pred cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.||..|+++|.+++|.++.. ++|++++||||||||++|++|+++.+... ..++++|||+|||+||.|++..+
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-------~~~~~~lil~PtreLa~Q~~~~~ 182 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------NKYPQCLCLSPTYELALQTGKVI 182 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-------CCCceEEEEcCcHHHHHHHHHHH
Confidence 79999999999999999843 48999999999999999999999987542 34678999999999999999999
Q ss_pred HhhcCCC-CcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC--CChHHHHHH
Q 007492 516 SSRLSPL-NMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND--DRGPVIEAL 591 (601)
Q Consensus 516 ~~~l~~~-~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d--~rg~~le~i 591 (601)
.++.... ++.+..+.|+.........+++|+||||+++ +.+.+ ...+.+ ..+++|||||||+|.+ .++..+..|
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~-~~~~~l-~~l~~lVlDEad~l~~~~~~~~~~~~i 260 (300)
T 3fmo_B 183 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-LKFIDP-KKIKVFVLDEADVMIATQGHQDQSIRI 260 (300)
T ss_dssp HHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTT-TCCCCG-GGCSEEEETTHHHHHHSTTHHHHHHHH
T ss_pred HHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHh-cCCCCh-hhceEEEEeCHHHHhhccCcHHHHHHH
Confidence 9888764 6889999998887776667899999999996 55543 222333 3699999999999986 455666665
Q ss_pred HHHH
Q 007492 592 VART 595 (601)
Q Consensus 592 v~r~ 595 (601)
+..+
T Consensus 261 ~~~~ 264 (300)
T 3fmo_B 261 QRML 264 (300)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 5443
No 5
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.92 E-value=5.3e-25 Score=220.20 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=130.8
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|++....++ .||..|+++|.++++.++ .|+|++++||||||||.+|++|++..+..... .....+.++|||+||+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~--~~~~~~~~~lil~Pt~ 112 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF--LERGDGPICLVLAPTR 112 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC--CCTTCCCSEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhccc--cccCCCCEEEEEeCcH
Confidence 344443333 689999999999999988 68999999999999999999999998864211 1123567899999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+|+.|+++.+.+++...++++..++|+....... ..+++|+||||+++ +.+.++...+ ..+++|||||||++.
T Consensus 113 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~---~~~~~lViDEah~l~ 189 (242)
T 3fe2_A 113 ELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNL---RRTTYLVLDEADRML 189 (242)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCC---TTCCEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCc---ccccEEEEeCHHHHh
Confidence 9999999999998888899999999988765332 24689999999997 5555444333 369999999999988
Q ss_pred C-CChHHHHHHHHHHH
Q 007492 582 D-DRGPVIEALVARTL 596 (601)
Q Consensus 582 d-~rg~~le~iv~r~~ 596 (601)
+ .+++.++.|+.++.
T Consensus 190 ~~~~~~~~~~i~~~~~ 205 (242)
T 3fe2_A 190 DMGFEPQIRKIVDQIR 205 (242)
T ss_dssp HTTCHHHHHHHHTTSC
T ss_pred hhCcHHHHHHHHHhCC
Confidence 7 68999988877653
No 6
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=218.55 Aligned_cols=158 Identities=18% Similarity=0.313 Sum_probs=127.6
Q ss_pred HHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 429 DEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 429 ~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
++....++ .||..|+++|.++++.++ .+++++++||||||||.+|++++++.+... ..+.++||++||++
T Consensus 51 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 51 TDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLET-------PQRLFALVLTPTRE 122 (249)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CCSSCEEEECSSHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcC-------CCCceEEEEeCCHH
Confidence 34444444 689999999999999998 689999999999999999999999988652 24678999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 507 LAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 507 La~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
|+.|+++.+.++....++++..++|+...... ...+++|+|+||+++ +.+.+ .....+ ..+++|||||||++.+
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~l-~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN-TKGFNL-RALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHH-STTCCC-TTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCcCc-cccCEEEEcChhhhhc
Confidence 99999999999888888999999998775432 235799999999997 44443 222222 3589999999999876
Q ss_pred -CChHHHHHHHHHHH
Q 007492 583 -DRGPVIEALVARTL 596 (601)
Q Consensus 583 -~rg~~le~iv~r~~ 596 (601)
+++..++.++..+.
T Consensus 201 ~~~~~~l~~i~~~~~ 215 (249)
T 3ber_A 201 MDFETEVDKILKVIP 215 (249)
T ss_dssp TTCHHHHHHHHHSSC
T ss_pred cChHHHHHHHHHhCC
Confidence 78888888876553
No 7
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=5.6e-24 Score=206.55 Aligned_cols=149 Identities=21% Similarity=0.364 Sum_probs=124.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||+|||.+|+++++..+... ..+.++||++|+++|+.|+++.+.
T Consensus 21 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 92 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDLK-------KDNIQAMVIVPTRELALQVSQICI 92 (206)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCTT-------SCSCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhccc-------CCCeeEEEEeCcHHHHHHHHHHHH
Confidence 689999999999999998 689999999999999999999999876542 346789999999999999999999
Q ss_pred hhcCCC-CcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
++.... ++.+..++|+...... ...+++|+|+||+++ +.+.++...+ ..+++|||||||++.+ .++..++.
T Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~---~~~~~lViDEah~~~~~~~~~~l~~ 169 (206)
T 1vec_A 93 QVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV---DHVQMIVLDEADKLLSQDFVQIMED 169 (206)
T ss_dssp HHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCC---TTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred HHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCc---ccCCEEEEEChHHhHhhCcHHHHHH
Confidence 988776 7899999998876432 235789999999997 4444433332 3689999999999887 78888888
Q ss_pred HHHHHH
Q 007492 591 LVARTL 596 (601)
Q Consensus 591 iv~r~~ 596 (601)
++.+++
T Consensus 170 i~~~~~ 175 (206)
T 1vec_A 170 IILTLP 175 (206)
T ss_dssp HHHHSC
T ss_pred HHHhCC
Confidence 887664
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.91 E-value=7.3e-24 Score=209.55 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=118.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||||||.+|++|++..+...... .....+.++||++||++||.|+++.+.
T Consensus 38 ~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~-~~~~~~~~~lil~Pt~~L~~q~~~~~~ 115 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS-REQRNGPGMLVLTPTRELALHVEAECS 115 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC----------CCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccch-hhccCCCcEEEEeCCHHHHHHHHHHHH
Confidence 589999999999999988 689999999999999999999999887642111 111257889999999999999999998
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
++. ..++.+..++|+...... ...+++|+|+||++| +.+.++...+ ..+++|||||||++.+ .+++.++.+
T Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~---~~~~~lViDEah~~~~~~~~~~~~~i 191 (228)
T 3iuy_A 116 KYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL---RSITYLVIDEADKMLDMEFEPQIRKI 191 (228)
T ss_dssp HHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC---TTCCEEEECCHHHHHHTTCHHHHHHH
T ss_pred Hhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc---ccceEEEEECHHHHhccchHHHHHHH
Confidence 865 567889999998765432 235789999999997 4444433333 3589999999999886 689999988
Q ss_pred HHHHH
Q 007492 592 VARTL 596 (601)
Q Consensus 592 v~r~~ 596 (601)
+.++.
T Consensus 192 ~~~~~ 196 (228)
T 3iuy_A 192 LLDVR 196 (228)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 87654
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.91 E-value=7.5e-24 Score=210.21 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=123.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||+|||.+|+++++..+... ..+.++|||+||++|+.|+++.+.
T Consensus 42 ~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 113 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLE-------NLSTQILILAPTREIAVQIHSVIT 113 (230)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------CCCceEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999987 689999999999999999999999887542 246799999999999999999999
Q ss_pred hhcCCC-CcEEEEEeCCCccch--hhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-C-ChHHHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSR--NELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-D-RGPVIEA 590 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~--~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~-rg~~le~ 590 (601)
++.... ++++..++|+..... ..+.+++|+|+||+++ +.+.++...+ ..+++|||||||++.+ . ++..++.
T Consensus 114 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~---~~~~~lViDEah~~~~~~~~~~~~~~ 190 (230)
T 2oxc_A 114 AIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNP---GSIRLFILDEADKLLEEGSFQEQINW 190 (230)
T ss_dssp HHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCG---GGCCEEEESSHHHHHSTTSSHHHHHH
T ss_pred HHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCccc---ccCCEEEeCCchHhhcCcchHHHHHH
Confidence 988765 889999999887543 2346799999999997 4444333222 3589999999999976 3 8888888
Q ss_pred HHHHHH
Q 007492 591 LVARTL 596 (601)
Q Consensus 591 iv~r~~ 596 (601)
|+.++.
T Consensus 191 i~~~~~ 196 (230)
T 2oxc_A 191 IYSSLP 196 (230)
T ss_dssp HHHHSC
T ss_pred HHHhCC
Confidence 887664
No 10
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.91 E-value=1.3e-23 Score=206.85 Aligned_cols=149 Identities=21% Similarity=0.326 Sum_probs=120.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||+|||.+|++++++.+... ..+.++||++|+++|+.|+++.+.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 103 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------VKAPQALMLAPTRELALQIQKVVM 103 (224)
T ss_dssp HTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------CCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhcc-------CCCceEEEEECCHHHHHHHHHHHH
Confidence 589999999999999998 689999999999999999999999987542 246799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh--hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN--ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+++...++++..++|+...... .+.+++|+|+||+++ +.+.++...+ ..+++|||||||++.+ .++..+..++
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~---~~~~~iViDEah~~~~~~~~~~l~~i~ 180 (224)
T 1qde_A 104 ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRT---DKIKMFILDEADEMLSSGFKEQIYQIF 180 (224)
T ss_dssp HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCC---TTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred HHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcch---hhCcEEEEcChhHHhhhhhHHHHHHHH
Confidence 9988889999999998775432 344699999999996 5555543332 3689999999999876 6888888887
Q ss_pred HHHH
Q 007492 593 ARTL 596 (601)
Q Consensus 593 ~r~~ 596 (601)
.++.
T Consensus 181 ~~~~ 184 (224)
T 1qde_A 181 TLLP 184 (224)
T ss_dssp HHSC
T ss_pred HhCC
Confidence 6643
No 11
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.91 E-value=3.8e-24 Score=215.09 Aligned_cols=154 Identities=20% Similarity=0.319 Sum_probs=124.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhccc-C-CCCCCCcEEEEEccChhHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD-G-YLHKDEFKIVYVAPMKALAAEVTRT 514 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~-~-~~~~~~~kvl~laPtraLa~Q~~~~ 514 (601)
.||..|+++|.++++.++ .++|++++||||||||.+|++|+++.+...... + .....++++|||+||++||.|+++.
T Consensus 41 ~g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 589999999999999998 689999999999999999999999988653110 0 0012357999999999999999999
Q ss_pred HHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHH
Q 007492 515 FSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIE 589 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le 589 (601)
+.++....++.+..++|+...... ...+++|+|+||+++ +.+.+....+ ..+++|||||||++.+ .+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~---~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL---EFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCC---TTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCCh---hhCCEEEEeCHHHHHhCchHHHHH
Confidence 999888888999999998876433 235789999999997 4444433332 3589999999999876 6899999
Q ss_pred HHHHH
Q 007492 590 ALVAR 594 (601)
Q Consensus 590 ~iv~r 594 (601)
.|+.+
T Consensus 197 ~i~~~ 201 (253)
T 1wrb_A 197 KIIEE 201 (253)
T ss_dssp HHHHS
T ss_pred HHHhh
Confidence 98874
No 12
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.5e-24 Score=212.75 Aligned_cols=158 Identities=19% Similarity=0.328 Sum_probs=121.6
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|++....++ .||..|+++|.++++.++ .++|++++||||||||.+|++|++..+... ...+.++|||+||+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~~~~~lil~Pt~ 108 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQP------ANKGFRALIISPTR 108 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCSC------CSSSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhhc------ccCCceEEEEeCCH
Confidence 334443333 699999999999999998 689999999999999999999999988542 12467899999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccch----hhcCCccEEEEChhhHHHHHccC-CCCCccCCccEEEeccCccc
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR----NELEETQMIVTTPEKWDVITRKS-SDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~----~~~~~~~IiVtTPekld~l~r~~-~~~~~~~~v~llIiDEaH~l 580 (601)
+|+.|+++.+.+++...++.+..++|+..... ....+++|+||||+++..+.+.. ....+ ..+++|||||||++
T Consensus 109 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~-~~~~~lViDEah~~ 187 (245)
T 3dkp_A 109 ELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL-ASVEWLVVDESDKL 187 (245)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC-TTCCEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc-ccCcEEEEeChHHh
Confidence 99999999999999888998888887654322 12357899999999984444333 23333 35999999999999
Q ss_pred CC----CChHHHHHHHH
Q 007492 581 ND----DRGPVIEALVA 593 (601)
Q Consensus 581 ~d----~rg~~le~iv~ 593 (601)
.+ .+...+..++.
T Consensus 188 ~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 188 FEDGKTGFRDQLASIFL 204 (245)
T ss_dssp HHHC--CHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHH
Confidence 76 34445555543
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.90 E-value=5.6e-24 Score=209.25 Aligned_cols=149 Identities=22% Similarity=0.339 Sum_probs=122.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||||||.+|+++++..+... ..+.++||++||++|+.|+++.+.
T Consensus 22 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 93 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPE-------RAEVQAVITAPTRELATQIYHETL 93 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhC-------cCCceEEEEcCcHHHHHHHHHHHH
Confidence 689999999999999998 689999999999999999999999987542 246799999999999999999999
Q ss_pred hhcCCC----CcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHH
Q 007492 517 SRLSPL----NMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPV 587 (601)
Q Consensus 517 ~~l~~~----~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~ 587 (601)
++.... ++.+..++|+....... ..+++|+|+||+++ +.+.++...+ ..+++|||||||++.+ .++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~---~~~~~lViDEah~~~~~~~~~~ 170 (219)
T 1q0u_A 94 KITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDV---HTAHILVVDEADLMLDMGFITD 170 (219)
T ss_dssp HHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCG---GGCCEEEECSHHHHHHTTCHHH
T ss_pred HHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCc---CcceEEEEcCchHHhhhChHHH
Confidence 988766 78899999987654332 24689999999997 4444433222 3589999999999986 67888
Q ss_pred HHHHHHHHH
Q 007492 588 IEALVARTL 596 (601)
Q Consensus 588 le~iv~r~~ 596 (601)
++.++.++.
T Consensus 171 l~~i~~~~~ 179 (219)
T 1q0u_A 171 VDQIAARMP 179 (219)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHhCC
Confidence 888877653
No 14
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=209.24 Aligned_cols=154 Identities=16% Similarity=0.291 Sum_probs=124.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||+|||.+|++|+++.+..... ....+.++||++||++|+.|+++.+.
T Consensus 43 ~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~---~~~~~~~~lil~Pt~~L~~q~~~~~~ 118 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW---TSTDGLGVLIISPTRELAYQTFEVLR 118 (236)
T ss_dssp TTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC---CGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc---cccCCceEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999998 68999999999999999999999998764211 11246789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccch--hhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSR--NELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~--~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+++...++.+..++|+..... ..+.+++|+|+||+++ +.+.+.. ...+ ..+++|||||||++.+ .++..+..++
T Consensus 119 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~-~~~~-~~~~~lViDEah~~~~~~~~~~~~~i~ 196 (236)
T 2pl3_A 119 KVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV-SFHA-TDLQMLVLDEADRILDMGFADTMNAVI 196 (236)
T ss_dssp HHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS-SCCC-TTCCEEEETTHHHHHHTTTHHHHHHHH
T ss_pred HHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC-Cccc-ccccEEEEeChHHHhcCCcHHHHHHHH
Confidence 998888899999999877543 2346899999999997 4444332 2222 3589999999999876 6788888887
Q ss_pred HHHH
Q 007492 593 ARTL 596 (601)
Q Consensus 593 ~r~~ 596 (601)
.++.
T Consensus 197 ~~~~ 200 (236)
T 2pl3_A 197 ENLP 200 (236)
T ss_dssp HTSC
T ss_pred HhCC
Confidence 7654
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=1.8e-23 Score=227.05 Aligned_cols=162 Identities=18% Similarity=0.321 Sum_probs=132.6
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|+++....+ .||..|+|+|.+++|.++ .|+|++++||||||||++|++|+++.+...... ....++++|||+|||
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~--~~~~~~~~lil~Ptr 139 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE--LELGRPQVVIVSPTR 139 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC--CCTTCCSEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcccc--cccCCccEEEEecCH
Confidence 455555554 799999999999999998 799999999999999999999999988753211 123467999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+||.|++..+.++....++++..++|+.....+. ..+++|+|+||+++ +.+.+....+. .+++|||||||+|.
T Consensus 140 eLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~---~~~~lVlDEah~~~ 216 (434)
T 2db3_A 140 ELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE---DTRFVVLDEADRML 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT---TCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc---cCCeEEEccHhhhh
Confidence 9999999999999988889999999998765332 35799999999996 66665543333 69999999999999
Q ss_pred C-CChHHHHHHHHHH
Q 007492 582 D-DRGPVIEALVART 595 (601)
Q Consensus 582 d-~rg~~le~iv~r~ 595 (601)
+ .+++.+..|+..+
T Consensus 217 ~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 217 DMGFSEDMRRIMTHV 231 (434)
T ss_dssp STTTHHHHHHHHHCT
T ss_pred ccCcHHHHHHHHHhc
Confidence 8 6888888887653
No 16
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.90 E-value=1.7e-23 Score=208.72 Aligned_cols=149 Identities=20% Similarity=0.317 Sum_probs=119.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||||||.+|++++++.+... ..+.++||++||++|+.|+++.+.
T Consensus 48 ~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 119 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIE-------FKETQALVLAPTRELAQQIQKVIL 119 (237)
T ss_dssp HTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------CCCceEEEEECcHHHHHHHHHHHH
Confidence 589999999999999998 689999999999999999999999987541 246799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh--c--CCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE--L--EETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~--~--~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
+++...++.+..++|+....... + ..++|+|+||+++ +.+.++...+. .+++|||||||++.+ .++..+..
T Consensus 120 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~---~~~~lViDEah~~~~~~~~~~l~~ 196 (237)
T 3bor_A 120 ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK---WIKMFVLDEADEMLSRGFKDQIYE 196 (237)
T ss_dssp HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCST---TCCEEEEESHHHHHHTTCHHHHHH
T ss_pred HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcc---cCcEEEECCchHhhccCcHHHHHH
Confidence 99888889999999987654332 1 2389999999996 66655443332 589999999999876 68888888
Q ss_pred HHHHHH
Q 007492 591 LVARTL 596 (601)
Q Consensus 591 iv~r~~ 596 (601)
++.++.
T Consensus 197 i~~~~~ 202 (237)
T 3bor_A 197 IFQKLN 202 (237)
T ss_dssp HHHHSC
T ss_pred HHHhCC
Confidence 877653
No 17
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.89 E-value=2.6e-23 Score=239.45 Aligned_cols=157 Identities=31% Similarity=0.451 Sum_probs=135.7
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||++....+ .||..|+++|.++++.++.+++|++++||||||||++|.+++++.+.. .+.+++|++|+|
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~il~i~P~r 85 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------NGGKAIYVTPLR 85 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SCSEEEEECSCH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------CCCeEEEEeCcH
Confidence 477777777 689999999999999966689999999999999999999999988764 357999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
+||.|++..| +.+..+|++|..++|+..........++|+||||++|+.+.+... .+.+.+++|||||+|.+.+ .|
T Consensus 86 ~La~q~~~~~-~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~~~ 162 (715)
T 2va8_A 86 ALTNEKYLTF-KDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP--EWLNEVNYFVLDELHYLNDPER 162 (715)
T ss_dssp HHHHHHHHHH-GGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC--GGGGGEEEEEECSGGGGGCTTT
T ss_pred HHHHHHHHHH-HHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCCh--hHhhccCEEEEechhhcCCccc
Confidence 9999999999 456667999999999988776666789999999999977776642 2344699999999999997 79
Q ss_pred hHHHHHHHHHHH
Q 007492 585 GPVIEALVARTL 596 (601)
Q Consensus 585 g~~le~iv~r~~ 596 (601)
|+.++.++.|+.
T Consensus 163 ~~~l~~i~~~~~ 174 (715)
T 2va8_A 163 GPVVESVTIRAK 174 (715)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHhcc
Confidence 999999998874
No 18
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=1.6e-23 Score=241.38 Aligned_cols=157 Identities=34% Similarity=0.502 Sum_probs=134.9
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||+++...+ .||..|+++|.++++.++.+++|++++||||||||++|.+++++.+.. .+.+++|++|+|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~~l~i~P~r 78 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---------QGGKAVYIVPLK 78 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------HCSEEEEECSSG
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCCEEEEEcCcH
Confidence 456666666 689999999999999855689999999999999999999999988864 257999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
+||.|++..|. .+..+|++|..++|+.........+++|+||||++|+.+.++.. .+.+.+++|||||+|++.+ .|
T Consensus 79 aLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 79 ALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHH-HHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcCh--hhhhcCCEEEEECCcccCCCcc
Confidence 99999999994 55567999999999988776667789999999999977776542 2334699999999999998 89
Q ss_pred hHHHHHHHHHHH
Q 007492 585 GPVIEALVARTL 596 (601)
Q Consensus 585 g~~le~iv~r~~ 596 (601)
|+.++.++.++.
T Consensus 156 ~~~~~~ll~~l~ 167 (720)
T 2zj8_A 156 GATLEVILAHML 167 (720)
T ss_dssp HHHHHHHHHHHB
T ss_pred cHHHHHHHHHhh
Confidence 999999999885
No 19
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=3.3e-23 Score=238.16 Aligned_cols=156 Identities=32% Similarity=0.514 Sum_probs=131.6
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
||++....+ .||+.|+++|.++++.++ +++|++++||||||||++|.+++++.+.. +.+++|++|+|
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~l~i~P~r 78 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK----------GGKSLYVVPLR 78 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT----------TCCEEEEESSH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCcEEEEeCcH
Confidence 455556666 688999999999999965 79999999999999999999999988753 57999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CC
Q 007492 506 ALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DR 584 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~r 584 (601)
+||.|++..| +.+..+|++|..++|+..........++|+||||++|+.+.++.. .+.+.+++|||||+|++.+ .|
T Consensus 79 ~La~q~~~~~-~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~r 155 (702)
T 2p6r_A 79 ALAGEKYESF-KKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEKR 155 (702)
T ss_dssp HHHHHHHHHH-TTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTTT
T ss_pred HHHHHHHHHH-HHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh--hHHhhcCEEEEeeeeecCCCCc
Confidence 9999999999 466677999999999988776666789999999999977776642 2344699999999999998 79
Q ss_pred hHHHHHHHHHHHh
Q 007492 585 GPVIEALVARTLR 597 (601)
Q Consensus 585 g~~le~iv~r~~r 597 (601)
|+.++.+++++.+
T Consensus 156 ~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 156 GATLEILVTKMRR 168 (702)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh
Confidence 9999999998854
No 20
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.89 E-value=8.8e-23 Score=198.03 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=120.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+++++++||||+|||.+|+++++..+.... ....+.++||++|+++|+.|+++.+.
T Consensus 19 ~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~~~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPSQ----ERGRKPRALVLTPTRELALQVASELT 93 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----CTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhcc----ccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 689999999999999998 6899999999999999999999999875321 11346799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
+.+.. +++..++|+...... ...+++|+|+||+++ +.+.++...+ ..+++||+||||++.+ .++..++.+
T Consensus 94 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~---~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 94 AVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDL---SRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp HHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCC---TTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcch---hhceEEEEEChhHhhccchHHHHHHH
Confidence 98764 678888888765432 235789999999997 4454433332 3589999999999876 688888888
Q ss_pred HHHHH
Q 007492 592 VARTL 596 (601)
Q Consensus 592 v~r~~ 596 (601)
+.++.
T Consensus 169 ~~~~~ 173 (207)
T 2gxq_A 169 LSATP 173 (207)
T ss_dssp HHTSC
T ss_pred HHhCC
Confidence 76543
No 21
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=9.7e-23 Score=200.19 Aligned_cols=146 Identities=16% Similarity=0.312 Sum_probs=116.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||+|||.+|+++++..+... ..+.++||++|+++|+.|+++.+.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 103 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSVLVMCHTRELAFQISKEYE 103 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCC-------TTCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhcc-------CCCEEEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999998 689999999999999999999999876431 235699999999999999999999
Q ss_pred hhcCCC-CcEEEEEeCCCccchhh----cCCccEEEEChhhHH-HHHccCCCCCccCCccEEEeccCcccCCC--ChHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRNE----LEETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEVHLLNDD--RGPVI 588 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~~----~~~~~IiVtTPekld-~l~r~~~~~~~~~~v~llIiDEaH~l~d~--rg~~l 588 (601)
++.... ++++..++|+....... ...++|+|+||+++. .+.+.... ...+++|||||||++.+. +...+
T Consensus 104 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~ 180 (220)
T 1t6n_A 104 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN---LKHIKHFILDECDKMLEQLDMRRDV 180 (220)
T ss_dssp HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC---CTTCCEEEEESHHHHHSSHHHHHHH
T ss_pred HHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCC---cccCCEEEEcCHHHHhcccCcHHHH
Confidence 988766 78999999987754322 135799999999974 44433322 236899999999999863 34555
Q ss_pred HHHHH
Q 007492 589 EALVA 593 (601)
Q Consensus 589 e~iv~ 593 (601)
..++.
T Consensus 181 ~~i~~ 185 (220)
T 1t6n_A 181 QEIFR 185 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.88 E-value=2.1e-22 Score=225.10 Aligned_cols=171 Identities=20% Similarity=0.281 Sum_probs=131.6
Q ss_pred ccchhhhHHHHHHHh--cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEE
Q 007492 422 LIEIKELDEFAQAAF--HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKI 498 (601)
Q Consensus 422 l~~i~~L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kv 498 (601)
+.....|+++...++ .||..|+|+|.++++.++.. ++|++++||||||||++|++|+++.+...... ...++++
T Consensus 73 l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~ 149 (563)
T 3i5x_A 73 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKA 149 (563)
T ss_dssp HHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCE
T ss_pred HhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc---ccCCeeE
Confidence 333334666666665 68999999999999999853 68999999999999999999999998764211 1235689
Q ss_pred EEEccChhHHHHHHHHHHhhcCC----CCcEEEEEeCCCccchhh----cCCccEEEEChhhH-HHHHccCCCCCccCCc
Q 007492 499 VYVAPMKALAAEVTRTFSSRLSP----LNMIVRELTGDMQLSRNE----LEETQMIVTTPEKW-DVITRKSSDMSLSMLV 569 (601)
Q Consensus 499 l~laPtraLa~Q~~~~~~~~l~~----~~i~V~~l~Gd~~~~~~~----~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v 569 (601)
|||+||++||.|++..+.+++.. .++.+..++|+....... ..+++|+||||++| +.+.+.. . .+...+
T Consensus 150 lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~-~~~~~~ 227 (563)
T 3i5x_A 150 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-N-KFFRFV 227 (563)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-H-HHCTTC
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-c-cccccc
Confidence 99999999999999999986532 246678888887654322 24789999999997 4444321 1 123358
Q ss_pred cEEEeccCcccCC-CChHHHHHHHHHHHh
Q 007492 570 KLLIIDEVHLLND-DRGPVIEALVARTLR 597 (601)
Q Consensus 570 ~llIiDEaH~l~d-~rg~~le~iv~r~~r 597 (601)
++|||||||+|.+ .|++.++.|+..+.+
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~ 256 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNE 256 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHH
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhh
Confidence 9999999999988 689999999988765
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=213.23 Aligned_cols=162 Identities=20% Similarity=0.302 Sum_probs=127.4
Q ss_pred hHHHHHHHh--cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhccc---------C--CCCCC
Q 007492 428 LDEFAQAAF--HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRD---------G--YLHKD 494 (601)
Q Consensus 428 L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~---------~--~~~~~ 494 (601)
|+++...++ .||..|+++|.++++.++ .++|++++||||||||++|++|+++.+...... + .....
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 445554444 689999999999999987 789999999999999999999999987653210 0 01123
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCcc
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVK 570 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~ 570 (601)
++++|||+||++||.|+++.+.+++...++++..++|+...... ...+++|+|+||++| +.+.++...+ ..++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~---~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL---DFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCC---TTCC
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcCh---hhCc
Confidence 47899999999999999999999988889999999998876432 235689999999997 4444433222 2589
Q ss_pred EEEeccCcccCC-CChHHHHHHHH
Q 007492 571 LLIIDEVHLLND-DRGPVIEALVA 593 (601)
Q Consensus 571 llIiDEaH~l~d-~rg~~le~iv~ 593 (601)
+|||||||++.+ .+++.+..++.
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~ 201 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVE 201 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHT
T ss_pred EEEEEChhHhhccCcHHHHHHHHH
Confidence 999999999886 57888877765
No 24
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.87 E-value=5e-22 Score=223.42 Aligned_cols=187 Identities=19% Similarity=0.270 Sum_probs=138.0
Q ss_pred EecCCCCCCCCCCCccccchhhhHHHHHHHh--cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHH
Q 007492 406 VIIPPTPTAQMKPGEKLIEIKELDEFAQAAF--HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 406 ~~vp~~~~~~~~~~~~l~~i~~L~~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
+++|+..+........+.....|+++...++ .||..|+|+|.++++.++.. +++++++||||+|||++|++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l 85 (579)
T 3sqw_A 6 IHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL 85 (579)
T ss_dssp EEECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 4556544433333333333334667776665 68999999999999999853 78999999999999999999999988
Q ss_pred hhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC----CCCcEEEEEeCCCccchhh----cCCccEEEEChhhH-
Q 007492 483 GQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS----PLNMIVRELTGDMQLSRNE----LEETQMIVTTPEKW- 553 (601)
Q Consensus 483 ~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~----~~~i~V~~l~Gd~~~~~~~----~~~~~IiVtTPekl- 553 (601)
...... ...++++|||+||++||.|++..+.+++. ...+.+..+.|+....... ..+++|+||||++|
T Consensus 86 ~~~~~~---~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~ 162 (579)
T 3sqw_A 86 INTKFD---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLI 162 (579)
T ss_dssp HHTTTS---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHH
T ss_pred Hhcccc---ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHH
Confidence 763211 12357999999999999999999998753 2346677888887654322 23689999999997
Q ss_pred HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHHh
Q 007492 554 DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLR 597 (601)
Q Consensus 554 d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~r 597 (601)
+.+.+... .+...+++|||||||+|.+ .|++.++.|+..+.+
T Consensus 163 ~~l~~~~~--~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~ 205 (579)
T 3sqw_A 163 DVLEKYSN--KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 205 (579)
T ss_dssp HHHHHHHH--HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHH
T ss_pred HHHHhccc--cccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhh
Confidence 44443211 1233589999999999988 689999999888765
No 25
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.86 E-value=1.8e-21 Score=208.21 Aligned_cols=147 Identities=20% Similarity=0.311 Sum_probs=121.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|++++||||+|||.+|++++++.+... ..+.++|||+|+++|+.|+++.+.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 126 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQ-------VRETQALILAPTRELAVQIQKGLL 126 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTT-------SCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhhc-------cCCceEEEEcCcHHHHHHHHHHHH
Confidence 689999999999999998 689999999999999999999999876431 246799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh---cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE---LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~---~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
++....++.+..++|+....... ..+++|+|+||+++ +.+.++.... ..+++|||||||++.+ .+...+..+
T Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~---~~~~~vViDEah~~~~~~~~~~~~~i 203 (410)
T 2j0s_A 127 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDV 203 (410)
T ss_dssp HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCC---TTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccH---hheeEEEEccHHHHHhhhhHHHHHHH
Confidence 99888899999999988765332 24689999999997 5555443332 2589999999999887 567777666
Q ss_pred HHH
Q 007492 592 VAR 594 (601)
Q Consensus 592 v~r 594 (601)
+..
T Consensus 204 ~~~ 206 (410)
T 2j0s_A 204 YRY 206 (410)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.86 E-value=5.9e-21 Score=203.55 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=119.4
Q ss_pred cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.||..|+++|.++++.++.. +++++++||||+|||.+|++++++.+... ..+.++|||+|+++|+.|+++.+
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~ 115 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------NKYPQCLCLSPTYELALQTGKVI 115 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-------CCCCCEEEECCCHHHHHHHHHHH
Confidence 68999999999999999843 48999999999999999999999887542 24568999999999999999999
Q ss_pred HhhcCCC-CcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC--CChHHHHHHH
Q 007492 516 SSRLSPL-NMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND--DRGPVIEALV 592 (601)
Q Consensus 516 ~~~l~~~-~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d--~rg~~le~iv 592 (601)
.++.... ++.+....|+..........++|+|+||+++..+..+.....+ ..+++|||||||++.+ .+...+..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~-~~~~~iViDEah~~~~~~~~~~~~~~~~ 194 (412)
T 3fht_A 116 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDP-KKIKVFVLDEADVMIATQGHQDQSIRIQ 194 (412)
T ss_dssp HHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCG-GGCCEEEEETHHHHHSTTTTHHHHHHHH
T ss_pred HHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcCh-hhCcEEEEeCHHHHhhcCCcHHHHHHHH
Confidence 9887654 6888888888877766666789999999997444433333333 3599999999999876 3445555444
Q ss_pred H
Q 007492 593 A 593 (601)
Q Consensus 593 ~ 593 (601)
.
T Consensus 195 ~ 195 (412)
T 3fht_A 195 R 195 (412)
T ss_dssp H
T ss_pred h
Confidence 3
No 27
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=210.85 Aligned_cols=139 Identities=15% Similarity=0.231 Sum_probs=113.6
Q ss_pred cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.||..|+++|.++++.++.. +++++++||||||||.+|++|+++.+... ..++++|||+||++||.|++..+
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------~~~~~~lil~Pt~~La~Q~~~~~ 182 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------NKYPQCLCLSPTYELALQTGKVI 182 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-------SCSCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-------CCCCcEEEEeChHHHHHHHHHHH
Confidence 79999999999999999853 48999999999999999999999876542 24568999999999999999999
Q ss_pred HhhcCCC-CcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 516 SSRLSPL-NMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 516 ~~~l~~~-~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
.++.... ++.+....|+..........++|+||||++|..+..+...+.+ ..+++|||||+|++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~-~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 183 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDP-KKIKVFVLDEADVMIAT 250 (479)
T ss_dssp HHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCG-GGCCEEEECCHHHHHTS
T ss_pred HHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCc-ccCCEEEEECHHHHhhc
Confidence 8877653 6778888888877666666789999999997444433333333 36999999999999863
No 28
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.85 E-value=6.4e-21 Score=203.08 Aligned_cols=146 Identities=23% Similarity=0.363 Sum_probs=119.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+++++++||||+|||.+|+++++..+... ..+.++||++|+++|+.|+++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~ 110 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPK-------LNKIQALIMVPTRELALQTSQVVR 110 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhc-------cCCccEEEEcCCHHHHHHHHHHHH
Confidence 689999999999999998 689999999999999999999999876541 245689999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEAL 591 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~i 591 (601)
+++...++.+..++|+...... ....++|+|+||+++ +.+.+....+ ..+++|||||||++.+ .++..++.+
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~---~~~~~vIiDEaH~~~~~~~~~~~~~i 187 (400)
T 1s2m_A 111 TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADL---SDCSLFIMDEADKMLSRDFKTIIEQI 187 (400)
T ss_dssp HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCC---TTCCEEEEESHHHHSSHHHHHHHHHH
T ss_pred HHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCccc---ccCCEEEEeCchHhhhhchHHHHHHH
Confidence 9998889999999998876432 235789999999997 5555444333 3589999999999886 455555555
Q ss_pred HH
Q 007492 592 VA 593 (601)
Q Consensus 592 v~ 593 (601)
+.
T Consensus 188 ~~ 189 (400)
T 1s2m_A 188 LS 189 (400)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=5.5e-21 Score=197.99 Aligned_cols=143 Identities=25% Similarity=0.384 Sum_probs=118.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+++++++||||+|||.+|+++++.. +.++|||+|+++|+.|+++.+.
T Consensus 12 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~-------------~~~~liv~P~~~L~~q~~~~~~ 77 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL-------------GMKSLVVTPTRELTRQVASHIR 77 (337)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh-------------cCCEEEEeCCHHHHHHHHHHHH
Confidence 699999999999999988 68999999999999999999998762 4689999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh--hcCCccEEEEChhhHH-HHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN--ELEETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekld-~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+++...++.+..++|+...... ....++|+|+||+++. .+.++...+ ..+++||+||||++.+ .+...+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~---~~~~~iViDEah~~~~~~~~~~~~~~~ 154 (337)
T 2z0m_A 78 DIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDL---SSFEIVIIDEADLMFEMGFIDDIKIIL 154 (337)
T ss_dssp HHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCG---GGCSEEEEESHHHHHHTTCHHHHHHHH
T ss_pred HHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcch---hhCcEEEEEChHHhhccccHHHHHHHH
Confidence 9888889999999998775432 3456999999999974 444433222 3589999999999976 5777777776
Q ss_pred HHHH
Q 007492 593 ARTL 596 (601)
Q Consensus 593 ~r~~ 596 (601)
..+.
T Consensus 155 ~~~~ 158 (337)
T 2z0m_A 155 AQTS 158 (337)
T ss_dssp HHCT
T ss_pred hhCC
Confidence 6543
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=3.5e-21 Score=206.91 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=122.6
Q ss_pred chhhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 424 EIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 424 ~i~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
.+.++.++++..| || .|+++|.++++.++ .++|++++||||||||.+|+++++..+. .+.++|||+|
T Consensus 6 ~~~~~~~~l~~~~-~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~~----------~~~~~lil~P 72 (414)
T 3oiy_A 6 EYEDFRSFFKKKF-GK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR----------KGKKSALVFP 72 (414)
T ss_dssp HHHHHHHHHHHHH-SS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHHT----------TTCCEEEEES
T ss_pred HHHHHHHHHHHhc-CC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHhc----------CCCEEEEEEC
Confidence 3556777887777 66 79999999999998 6889999999999999999999888652 4679999999
Q ss_pred ChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh-----h--cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEec
Q 007492 504 MKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-----E--LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIID 575 (601)
Q Consensus 504 traLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~-----~--~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiD 575 (601)
|++||.|++..|.+++. .++++..++|+...... . ...++|+|+||++| +.+.. ... ..+++||||
T Consensus 73 t~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~---~~~~~iViD 146 (414)
T 3oiy_A 73 TVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQ---KRFDFVFVD 146 (414)
T ss_dssp SHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTT---CCCSEEEES
T ss_pred CHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hcc---ccccEEEEe
Confidence 99999999999999877 88999999999876321 1 13489999999997 43332 111 258999999
Q ss_pred cCcccC------------CCChHH-HHHHHHHHH
Q 007492 576 EVHLLN------------DDRGPV-IEALVARTL 596 (601)
Q Consensus 576 EaH~l~------------d~rg~~-le~iv~r~~ 596 (601)
|||++. ..+.+. ++.++..++
T Consensus 147 EaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~ 180 (414)
T 3oiy_A 147 DVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIK 180 (414)
T ss_dssp CHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcc
Confidence 999874 234444 777777665
No 31
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.84 E-value=4e-21 Score=203.62 Aligned_cols=148 Identities=22% Similarity=0.334 Sum_probs=122.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+++++++||||+|||++|++++++.+... ..+.++||++|+++|+.|+++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-------~~~~~~lil~P~~~L~~q~~~~~~ 110 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------VKAPQALMLAPTRELALQIQKVVM 110 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------CCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhcc-------CCCCCEEEEcCCHHHHHHHHHHHH
Confidence 589999999999999998 689999999999999999999999887542 246799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh--hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN--ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+++...++++..++|+...... .+.+++|+|+||+++ +.+.++.... ..+++||+||||++.+ .++..+..++
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~---~~~~~vIiDEah~~~~~~~~~~~~~~~ 187 (394)
T 1fuu_A 111 ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRT---DKIKMFILDEADEMLSSGFKEQIYQIF 187 (394)
T ss_dssp HHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCC---TTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred HHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcch---hhCcEEEEEChHHhhCCCcHHHHHHHH
Confidence 9998889999999998875432 234689999999996 5555443222 3589999999999875 6778787776
Q ss_pred HHH
Q 007492 593 ART 595 (601)
Q Consensus 593 ~r~ 595 (601)
..+
T Consensus 188 ~~~ 190 (394)
T 1fuu_A 188 TLL 190 (394)
T ss_dssp HHS
T ss_pred HhC
Confidence 654
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=204.41 Aligned_cols=148 Identities=20% Similarity=0.320 Sum_probs=123.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+++++++||||||||.+|++++++.+... ..+.++||++|+++|+.|+++.+.
T Consensus 58 ~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~ 129 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIELD-------LKATQALVLAPTRELAQQIQKVVM 129 (414)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCTT-------SCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhhc-------CCceeEEEEeChHHHHHHHHHHHH
Confidence 689999999999999998 689999999999999999999999887542 246789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh----cCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE----LEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEA 590 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~----~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~ 590 (601)
+++...++.+..++|+....... ...++|+|+||+++ +.+.++..... .+++|||||||++.+ .++..+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~---~~~~vViDEah~~~~~~~~~~~~~ 206 (414)
T 3eiq_A 130 ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLSRGFKDQIYD 206 (414)
T ss_dssp HHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCST---TCCEEEECSHHHHHHTTTHHHHHH
T ss_pred HHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccc---cCcEEEEECHHHhhccCcHHHHHH
Confidence 99888889999999987764332 25789999999996 66665543333 589999999999875 57788777
Q ss_pred HHHHH
Q 007492 591 LVART 595 (601)
Q Consensus 591 iv~r~ 595 (601)
++.++
T Consensus 207 ~~~~~ 211 (414)
T 3eiq_A 207 IFQKL 211 (414)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 76554
No 33
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=1.4e-20 Score=197.12 Aligned_cols=147 Identities=22% Similarity=0.357 Sum_probs=120.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++..+.+++++||||+|||.+|+++++..+.. ..+.++||++|+++|+.|+++.+.
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~ 95 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--------NNGIEAIILTPTRELAIQVADEIE 95 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------SSSCCEEEECSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------cCCCcEEEEcCCHHHHHHHHHHHH
Confidence 589999999999999998655799999999999999999999987643 246799999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh--hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN--ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv 592 (601)
+.+...++.+..++|+...... ...+++|+|+||+++ ..+.++...+ ..+++|||||||.+.+ .+...+..++
T Consensus 96 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~---~~~~~iIiDEah~~~~~~~~~~~~~~~ 172 (367)
T 1hv8_A 96 SLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNL---KNVKYFILDEADEMLNMGFIKDVEKIL 172 (367)
T ss_dssp HHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCT---TSCCEEEEETHHHHHTTTTHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCccc---ccCCEEEEeCchHhhhhchHHHHHHHH
Confidence 9998888999999998876432 235789999999997 4444433222 3589999999999876 5666666665
Q ss_pred HH
Q 007492 593 AR 594 (601)
Q Consensus 593 ~r 594 (601)
..
T Consensus 173 ~~ 174 (367)
T 1hv8_A 173 NA 174 (367)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 34
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.83 E-value=2.3e-20 Score=197.83 Aligned_cols=145 Identities=17% Similarity=0.331 Sum_probs=115.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .+++++++||||+|||.+|+++++..+... ..+.++||++|+++|+.|++..+.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------~~~~~~lil~P~~~L~~q~~~~~~ 97 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSVLVMCHTRELAFQISKEYE 97 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCCC-------TTCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhccc-------CCCeeEEEECCCHHHHHHHHHHHH
Confidence 589999999999999988 689999999999999999999999876431 245699999999999999999999
Q ss_pred hhcCCC-CcEEEEEeCCCccchhh----cCCccEEEEChhhHHHH-HccCCCCCccCCccEEEeccCcccCCC--ChHHH
Q 007492 517 SRLSPL-NMIVRELTGDMQLSRNE----LEETQMIVTTPEKWDVI-TRKSSDMSLSMLVKLLIIDEVHLLNDD--RGPVI 588 (601)
Q Consensus 517 ~~l~~~-~i~V~~l~Gd~~~~~~~----~~~~~IiVtTPekld~l-~r~~~~~~~~~~v~llIiDEaH~l~d~--rg~~l 588 (601)
++.... ++++..++|+....... ...++|+|+||+++..+ .+....+ ..+++|||||||++.+. +...+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~---~~~~~vViDEaH~~~~~~~~~~~~ 174 (391)
T 1xti_A 98 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL---KHIKHFILDECDKMLEQLDMRRDV 174 (391)
T ss_dssp HHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC---TTCSEEEECSHHHHTSSHHHHHHH
T ss_pred HHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccc---cccCEEEEeCHHHHhhccchHHHH
Confidence 988765 78999999988754332 13579999999997444 3333222 36899999999999873 34444
Q ss_pred HHHH
Q 007492 589 EALV 592 (601)
Q Consensus 589 e~iv 592 (601)
..++
T Consensus 175 ~~~~ 178 (391)
T 1xti_A 175 QEIF 178 (391)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 35
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.83 E-value=3.2e-20 Score=196.24 Aligned_cols=145 Identities=19% Similarity=0.277 Sum_probs=115.2
Q ss_pred cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.||..|+++|.++++.++.. +++++++||||+|||.+|+++++..+... ..+.++|||+|+++|+.|+++.+
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~ 95 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-------DASPQAICLAPSRELARQTLEVV 95 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------CCSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-------CCCccEEEECCCHHHHHHHHHHH
Confidence 68999999999999999843 28999999999999999999999876541 24679999999999999999999
Q ss_pred HhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCC--ChHHHHHHH
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDD--RGPVIEALV 592 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~--rg~~le~iv 592 (601)
.+++...++.+..++|+..... ...+++|+|+||+++ +.+.++...+ ..+++|||||||++.+. ++..+..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~~~~~~---~~~~~iIiDEah~~~~~~~~~~~~~~~~ 171 (395)
T 3pey_A 96 QEMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRRKLMQL---QKIKIFVLDEADNMLDQQGLGDQCIRVK 171 (395)
T ss_dssp HHHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHTTCBCC---TTCCEEEEETHHHHHHSTTHHHHHHHHH
T ss_pred HHHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHcCCccc---ccCCEEEEEChhhhcCccccHHHHHHHH
Confidence 9988888888888887754332 234789999999997 4554433332 35899999999998763 334444443
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.81 E-value=8.7e-20 Score=202.32 Aligned_cols=149 Identities=23% Similarity=0.368 Sum_probs=114.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
..+|+++|.++++.++ .++|++++||||+|||++|++|+++.+.... ...+.++|||+||++|+.|++..|.++
T Consensus 5 ~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 5 TKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp ---CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3489999999999998 6899999999999999999999999886521 112678999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHH
Q 007492 519 LSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVAR 594 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r 594 (601)
+...+++|..++|+...... ...+++|+||||+++ +.+..+.. .....+++|||||||++.+. ++ +..++.+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~~vViDEah~~~~~-~~-~~~~~~~ 154 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL--TSLSIFTLMIFDECHNTTGN-HP-YNVLMTR 154 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSC--CCSTTCSEEEEETGGGCSTT-SH-HHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcc--cccccCCEEEEECCcccCCc-ch-HHHHHHH
Confidence 98889999999998865432 234689999999997 44444332 12236899999999999874 33 6666655
Q ss_pred HHh
Q 007492 595 TLR 597 (601)
Q Consensus 595 ~~r 597 (601)
++.
T Consensus 155 ~~~ 157 (556)
T 4a2p_A 155 YLE 157 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=200.36 Aligned_cols=147 Identities=21% Similarity=0.343 Sum_probs=118.3
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
+|+++|.++++.++ .++|++++||||+|||++|++++++.+.... ...+.++|||+||++|+.|++..|.+++.
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----CGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----cCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 69999999999998 6899999999999999999999999887531 11367899999999999999999999998
Q ss_pred CCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHH
Q 007492 521 PLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTL 596 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~ 596 (601)
..++++..++|+...... ...+++|+||||+++ +.+..+.. .....+++|||||||++.+.. + +..++.+.+
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~ 153 (555)
T 3tbk_A 78 RLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI--PSLSVFTLMIFDECHNTSKNH-P-YNQIMFRYL 153 (555)
T ss_dssp TTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS--CCGGGCSEEEETTGGGCSTTC-H-HHHHHHHHH
T ss_pred cCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc--cccccCCEEEEECccccCCcc-h-HHHHHHHHH
Confidence 889999999999865432 234689999999997 44443332 122358999999999998743 3 666666655
Q ss_pred h
Q 007492 597 R 597 (601)
Q Consensus 597 r 597 (601)
.
T Consensus 154 ~ 154 (555)
T 3tbk_A 154 D 154 (555)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=215.42 Aligned_cols=136 Identities=29% Similarity=0.438 Sum_probs=115.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
+| .|+++|.++++.+. .+++++|+||||||||++|.++++..+. .+.++||++|+++|+.|+++.|.+
T Consensus 84 ~f-~L~~~Q~eai~~l~-~g~~vLV~apTGSGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp SS-CCCHHHHHHHHHHH-HTCEEEEECCTTSCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHHHHH
Confidence 56 49999999999987 7899999999999999999999998774 357999999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHH-HccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVI-TRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVART 595 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l-~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~ 595 (601)
.+. .|+.++|+..... +++|+|+||++|..+ .+... ....+++|||||||+|.+ .||.+++.++..+
T Consensus 152 ~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~~---~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HhC----CEEEEeCCCccCC----CCCEEEEcHHHHHHHHHcCcc---hhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 876 6888999987654 479999999998444 43322 233699999999999998 6999999998776
Q ss_pred H
Q 007492 596 L 596 (601)
Q Consensus 596 ~ 596 (601)
+
T Consensus 221 ~ 221 (1010)
T 2xgj_A 221 P 221 (1010)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.5e-20 Score=220.11 Aligned_cols=138 Identities=28% Similarity=0.407 Sum_probs=117.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
++..|+++|.++++.+. .++++||+||||||||++|+++++..+. .+.++||++||++|+.|+++.|.+
T Consensus 181 ~~f~ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l~----------~g~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp CSSCCCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 34479999999999986 7999999999999999999999999874 367999999999999999999999
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVART 595 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~ 595 (601)
++. .|+.++|+.+... +++|+|+||++| +.+.+... ....+++|||||||+|.+ .||.+++.++..+
T Consensus 250 ~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~---~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 250 EFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCSS---HHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred HhC----CccEEeCccccCC----CCCEEEeChHHHHHHHHcCcc---ccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 876 5778999988654 489999999997 45554432 233699999999999998 7999999998776
Q ss_pred Hh
Q 007492 596 LR 597 (601)
Q Consensus 596 ~r 597 (601)
+.
T Consensus 319 ~~ 320 (1108)
T 3l9o_A 319 PD 320 (1108)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 40
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=176.85 Aligned_cols=139 Identities=23% Similarity=0.303 Sum_probs=98.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH-HHHHHH
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE-VTRTFS 516 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q-~~~~~~ 516 (601)
+...|+++|.++++.++ .+.++++++|||+|||.+|++++++.+...... ..+.++||++|+++|+.| +.+.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~----~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA----SEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT----TCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc----cCCCcEEEEECHHHHHHHHHHHHHH
Confidence 34589999999999998 689999999999999999999998877553211 136789999999999999 666776
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhHHHHHccCCC----CCccCCccEEEeccCcccCC
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKWDVITRKSSD----MSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekld~l~r~~~~----~~~~~~v~llIiDEaH~l~d 582 (601)
++... ++.|..++|+...... ....++|+|+||+++......... ......+++|||||||++.+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 66543 7889999998765432 234689999999997444333211 01223589999999999975
No 41
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=3.7e-20 Score=189.27 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=117.0
Q ss_pred chhhhHHHHHH--HhcCC--CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEE
Q 007492 424 EIKELDEFAQA--AFHGY--KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIV 499 (601)
Q Consensus 424 ~i~~L~~~~~~--~f~g~--~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl 499 (601)
....+++|... .+.|. -.|+++|.++++.++. +.+.++++|||+|||.+|++++...+.. ...++|
T Consensus 92 ~~~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~~l 161 (282)
T 1rif_A 92 SRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKIL 161 (282)
T ss_dssp CHHHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH---------CSSEEE
T ss_pred CHHHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCCeEE
Confidence 33466666542 11222 3799999999999884 5778899999999999998888776643 345899
Q ss_pred EEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcc
Q 007492 500 YVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 500 ~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
||+||++|+.|+++.+.+++...+..+..++|+..........++|+|+||+.+ .+.. . .+...+++|||||||+
T Consensus 162 il~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l---~~~~-~-~~~~~~~~vIiDEaH~ 236 (282)
T 1rif_A 162 IIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP-K-EWFSQFGMMMNDECHL 236 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHH---TTSC-G-GGGGGEEEEEEETGGG
T ss_pred EEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchhhhccCCcEEEEchHHH---HhhH-H-HHHhhCCEEEEECCcc
Confidence 999999999999999999877677788888888766544446789999999875 2211 1 2334689999999999
Q ss_pred cCCCChHHHHHHHHHH
Q 007492 580 LNDDRGPVIEALVART 595 (601)
Q Consensus 580 l~d~rg~~le~iv~r~ 595 (601)
+. ++.++.++.++
T Consensus 237 ~~---~~~~~~il~~~ 249 (282)
T 1rif_A 237 AT---GKSISSIISGL 249 (282)
T ss_dssp CC---HHHHHHHTTTC
T ss_pred CC---cccHHHHHHHh
Confidence 98 56777776654
No 42
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.80 E-value=4.2e-20 Score=204.69 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=110.8
Q ss_pred cCCCCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.|+..|+++|.++++.++.. +++++++||||||||.+|++++++.+... ..+.++|||+|+++|+.|+++.|
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-------~~~~~vLvl~P~~~L~~Q~~~~~ 209 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-------VPKPQAICLAPSRELARQIMDVV 209 (508)
T ss_dssp --CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-------CCSCCEEEECSCHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-------CCCceEEEEECcHHHHHHHHHHH
Confidence 47889999999999999843 48999999999999999999999987542 24569999999999999999999
Q ss_pred HhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC--CChHHHHHHH
Q 007492 516 SSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND--DRGPVIEALV 592 (601)
Q Consensus 516 ~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d--~rg~~le~iv 592 (601)
.+++...++.+....|+..... ....++|+|+||+++ +.+.++...+ ..+++|||||||++.+ .++..+..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~l~~~~~~~---~~~~lIIiDEaH~~~~~~~~~~~~~~i~ 285 (508)
T 3fho_A 210 TEMGKYTEVKTAFGIKDSVPKG-AKIDAQIVIGTPGTVMDLMKRRQLDA---RDIKVFVLDEADNMLDQQGLGDQSMRIK 285 (508)
T ss_dssp HHHSTTSSCCEEC-----------CCCCSEEEECHHHHHHHHHTTCSCC---TTCCEEEECCHHHHTTC--CHHHHHHHH
T ss_pred HHhCCccCeeEEEEeCCccccc-ccCCCCEEEECHHHHHHHHHcCCccc---cCCCEEEEechhhhcccCCcHHHHHHHH
Confidence 9998877777766666544322 234789999999996 5555544333 3589999999999987 4566666665
Q ss_pred HHH
Q 007492 593 ART 595 (601)
Q Consensus 593 ~r~ 595 (601)
..+
T Consensus 286 ~~~ 288 (508)
T 3fho_A 286 HLL 288 (508)
T ss_dssp HHS
T ss_pred HhC
Confidence 544
No 43
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.80 E-value=3.8e-19 Score=203.61 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=117.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.||..|+++|.++++.++ .++|+++++|||+|||++|++++++.+.... ...+.++|||+||++|+.|++..|.
T Consensus 9 ~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp TC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----TTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----cCCCCeEEEEECCHHHHHHHHHHHH
Confidence 588899999999999998 6899999999999999999999998876521 0123689999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
+++...+++|..++|+...... ...+++|+|+||+++ +.+..+.. .. ...+++|||||||++.+.. .+..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~-~~-l~~~~~vViDEaH~~~~~~--~~~~i~ 158 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI-PS-LSIFTLMIFDECHNTSKQH--PYNMIM 158 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS-CC-GGGCSEEEEETGGGCSTTC--HHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc-cc-cccccEEEEeCCCcccCcc--cHHHHH
Confidence 9998889999999998865432 224799999999997 44444332 12 2358999999999998643 355555
Q ss_pred HHHHh
Q 007492 593 ARTLR 597 (601)
Q Consensus 593 ~r~~r 597 (601)
.+++.
T Consensus 159 ~~~l~ 163 (696)
T 2ykg_A 159 FNYLD 163 (696)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.80 E-value=1.3e-19 Score=216.44 Aligned_cols=149 Identities=17% Similarity=0.253 Sum_probs=123.3
Q ss_pred hhhHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 426 KELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 426 ~~L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
+++.+++... .||. | ++|.++++.++ .|+|++++||||||||. |.++++..+.. .+.++|||+||+
T Consensus 44 ~~~~~~~~~~-~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------~~~~~lil~Ptr 109 (1054)
T 1gku_B 44 KEFVEFFRKC-VGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL---------KGKRCYVIFPTS 109 (1054)
T ss_dssp HHHHHHHHTT-TCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT---------TSCCEEEEESCH
T ss_pred HHHHHHHHHh-cCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------cCCeEEEEeccH
Confidence 3444554443 4898 9 99999999998 68999999999999998 88888877654 467999999999
Q ss_pred hHHHHHHHHHHhhcCCCCc----EEEEEeCCCccchh-----hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEecc
Q 007492 506 ALAAEVTRTFSSRLSPLNM----IVRELTGDMQLSRN-----ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDE 576 (601)
Q Consensus 506 aLa~Q~~~~~~~~l~~~~i----~V~~l~Gd~~~~~~-----~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDE 576 (601)
+||.|++..+.+++...++ +|..++|+.....+ .+.+++|+|+||++|..+... +. .+++|||||
T Consensus 110 eLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~---L~---~l~~lViDE 183 (1054)
T 1gku_B 110 LLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LG---HFDFIFVDD 183 (1054)
T ss_dssp HHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT---SC---CCSEEEESC
T ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH---hc---cCCEEEEeC
Confidence 9999999999999988888 89999999887542 233499999999997443333 22 699999999
Q ss_pred CcccCCCChHHHHHHHHHH
Q 007492 577 VHLLNDDRGPVIEALVART 595 (601)
Q Consensus 577 aH~l~d~rg~~le~iv~r~ 595 (601)
||+|.+ +|+.++.++.++
T Consensus 184 ah~~l~-~~~~~~~i~~~l 201 (1054)
T 1gku_B 184 VDAILK-ASKNVDKLLHLL 201 (1054)
T ss_dssp HHHHHT-STHHHHHHHHHT
T ss_pred hhhhhh-ccccHHHHHHHh
Confidence 999998 899999998876
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.79 E-value=4e-19 Score=207.03 Aligned_cols=151 Identities=23% Similarity=0.361 Sum_probs=115.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+..|+++|.++++.++ .++|+++++|||+|||++|++++++.+.... ...+.++|||+|+++|+.|++..|.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 478899999999999998 6899999999999999999999999887531 1126789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
+++...+++|..++|+...... ...+++|+||||+++ +.+.++.. .....+++|||||||++.+.. + +..++
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~--~~~~~~~~iViDEaH~~~~~~-~-~~~i~ 393 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL--TSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSC--CCGGGCSEEEETTGGGCSTTS-H-HHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccc--cccccCCEEEEECccccCCCc-c-HHHHH
Confidence 9998889999999999865432 235799999999997 44443322 122358999999999998742 3 66766
Q ss_pred HHHHh
Q 007492 593 ARTLR 597 (601)
Q Consensus 593 ~r~~r 597 (601)
.++++
T Consensus 394 ~~~~~ 398 (797)
T 4a2q_A 394 TRYLE 398 (797)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.77 E-value=9.6e-19 Score=207.54 Aligned_cols=139 Identities=29% Similarity=0.454 Sum_probs=115.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
+| .|+++|.++++.++ .|++++++||||||||++|++++...+. .+.++||++|+++|+.|++..|.+
T Consensus 37 ~f-~l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp SS-CCCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44 58999999999987 6899999999999999999999887653 367999999999999999999998
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVART 595 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~ 595 (601)
.+. ++.|..++|+..... .++|+|+||++| +.+.+... ....+++|||||||++.+ .||.+++.++..+
T Consensus 105 ~~~--~~~v~~l~G~~~~~~----~~~IlV~Tpe~L~~~l~~~~~---~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 105 TFD--DVNIGLITGDVQINP----DANCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML 175 (997)
T ss_dssp TC----CCEEEECSSCEECT----TSSEEEEEHHHHHHHHHHTCS---GGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS
T ss_pred HcC--CCeEEEEeCCCccCC----CCCEEEECHHHHHHHHHhCch---hhcCCCEEEEECcccccccchHHHHHHHHHhc
Confidence 764 678999999887653 489999999997 44444332 223699999999999998 6999999998876
Q ss_pred Hh
Q 007492 596 LR 597 (601)
Q Consensus 596 ~r 597 (601)
+.
T Consensus 176 ~~ 177 (997)
T 4a4z_A 176 PQ 177 (997)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.76 E-value=2e-18 Score=206.49 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=116.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHH
Q 007492 429 DEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALA 508 (601)
Q Consensus 429 ~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa 508 (601)
+++++..+ || .|+++|.+++|.++ .|+|++++||||||||.+|+++++..+. .+.++|||+||++||
T Consensus 68 ~~~~~~~~-gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~~----------~~~~~Lil~PtreLa 134 (1104)
T 4ddu_A 68 RSFFKKKF-GK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR----------KGKKSALVFPTVTLV 134 (1104)
T ss_dssp HHHHHHHS-SS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHHT----------TTCCEEEEESSHHHH
T ss_pred HHHHHHhc-CC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHHh----------cCCeEEEEechHHHH
Confidence 33444433 77 69999999999998 6899999999999999999998888763 467999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCccchh-----hc--CCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCccc
Q 007492 509 AEVTRTFSSRLSPLNMIVRELTGDMQLSRN-----EL--EETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 509 ~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~-----~~--~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
.|++..|.++. ..+++|..++|+.+.... .+ ..++|+|+||++| +.+.. +.+ ..+++|||||||++
T Consensus 135 ~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~-~~l~~lViDEaH~l 208 (1104)
T 4ddu_A 135 KQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQ-KRFDFVFVDDVDAV 208 (1104)
T ss_dssp HHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHT-SCCSEEEESCHHHH
T ss_pred HHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcc-cCcCEEEEeCCCcc
Confidence 99999999966 778999999999886321 11 2489999999997 44432 111 25999999999987
Q ss_pred CC------------CChHH-HHHHHHHHH
Q 007492 581 ND------------DRGPV-IEALVARTL 596 (601)
Q Consensus 581 ~d------------~rg~~-le~iv~r~~ 596 (601)
.. .+.+. ++.++..++
T Consensus 209 ~~~~r~~Dr~L~~~gf~~~~i~~il~~l~ 237 (1104)
T 4ddu_A 209 LKASRNIDTLLMMVGIPEEIIRKAFSTIK 237 (1104)
T ss_dssp TTSSHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred ccccccchhhhHhcCCCHHHHHHHHHhcc
Confidence 64 23334 677776665
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.75 E-value=3.5e-18 Score=202.14 Aligned_cols=151 Identities=23% Similarity=0.366 Sum_probs=115.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+..|+++|.++++.++ .|.|+++++|||+|||++|++++++.+.... ...+.++|||+|+++|+.|++..|.
T Consensus 244 ~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 467799999999999998 6899999999999999999999998775421 1126789999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh---hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
+++...+++|..++|+...... ...+++|+|+||+++ +.+.++.. .. ...+++|||||||++.... + +..++
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~-~~-l~~~~liViDEaH~~~~~~-~-~~~i~ 393 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL-TS-LSIFTLMIFDECHNTTGNH-P-YNVLM 393 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSC-CC-GGGCSEEEEETGGGCSTTC-H-HHHHH
T ss_pred HHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCcc-cc-ccCCCEEEEECccccCCCc-c-HHHHH
Confidence 9998889999999999865432 234689999999997 44443322 12 2358999999999998743 3 77777
Q ss_pred HHHHh
Q 007492 593 ARTLR 597 (601)
Q Consensus 593 ~r~~r 597 (601)
.++++
T Consensus 394 ~~~~~ 398 (936)
T 4a2w_A 394 TRYLE 398 (936)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 49
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.75 E-value=1.1e-18 Score=196.49 Aligned_cols=144 Identities=17% Similarity=0.258 Sum_probs=110.1
Q ss_pred hHHHHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 428 LDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 428 L~~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
+...++..| ||..|+|+|.++++.++ .|+|++++||||+|||++|++|++. ...++|||+|+++|
T Consensus 32 l~~~L~~~f-g~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~-------------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 32 VKDILQNVF-KLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALC-------------SDGFTLVICPLISL 96 (591)
T ss_dssp HHHHHHHTS-CCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHT-------------SSSEEEEECSCHHH
T ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHH-------------cCCcEEEEeCHHHH
Confidence 334444444 89999999999999998 6899999999999999999999975 24589999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCccchh---------hcCCccEEEEChhhHH---HHHccCCCCCccCCccEEEec
Q 007492 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---------ELEETQMIVTTPEKWD---VITRKSSDMSLSMLVKLLIID 575 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---------~~~~~~IiVtTPekld---~l~r~~~~~~~~~~v~llIiD 575 (601)
+.|++..+.++ |+.+..++|+...... ....++|+|+||++|. .+............+.+||||
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 99999999885 7889999998765432 1347899999999862 222111001112358999999
Q ss_pred cCcccCC---CChHHHHH
Q 007492 576 EVHLLND---DRGPVIEA 590 (601)
Q Consensus 576 EaH~l~d---~rg~~le~ 590 (601)
|||++.+ +|.+.+..
T Consensus 173 EAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp TGGGGSTTCTTCCGGGGG
T ss_pred CcccccccccccHHHHHH
Confidence 9999986 36666544
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.73 E-value=3.4e-18 Score=188.72 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=116.2
Q ss_pred chhhhHHHHHH-Hh-c--CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEE
Q 007492 424 EIKELDEFAQA-AF-H--GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIV 499 (601)
Q Consensus 424 ~i~~L~~~~~~-~f-~--g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl 499 (601)
+...+.+|... .| . +...|+++|.++++.++ .+.++++++|||+|||.+|++++...+.. ...++|
T Consensus 92 ~~~~f~~w~~~~~f~~~~~~~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~vl 161 (510)
T 2oca_A 92 SRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKIL 161 (510)
T ss_dssp CHHHHHHHHHTCCEEETTEEECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH---------CSSEEE
T ss_pred CHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------CCCeEE
Confidence 33455556542 12 1 13389999999999998 56899999999999999999998887653 345999
Q ss_pred EEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcc
Q 007492 500 YVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 500 ~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
||+|+++|+.|+++.|.++....++.+..++|+.....+....++|+|+||+.+ .+. .. .....+++|||||+|+
T Consensus 162 vl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~-~~-~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 162 IIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQ-PK-EWFSQFGMMMNDECHL 236 (510)
T ss_dssp EEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHH---TTS-CG-GGGGGEEEEEEETGGG
T ss_pred EEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEEEEeHHHH---hhc-hh-hhhhcCCEEEEECCcC
Confidence 999999999999999988766566788999998776655556799999999975 111 11 2234689999999999
Q ss_pred cCCCChHHHHHHHHH
Q 007492 580 LNDDRGPVIEALVAR 594 (601)
Q Consensus 580 l~d~rg~~le~iv~r 594 (601)
+.. +.++.++..
T Consensus 237 ~~~---~~~~~il~~ 248 (510)
T 2oca_A 237 ATG---KSISSIISG 248 (510)
T ss_dssp CCH---HHHHHHGGG
T ss_pred CCc---ccHHHHHHh
Confidence 984 455555443
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=195.39 Aligned_cols=135 Identities=24% Similarity=0.381 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH-HHHHHhhc
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV-TRTFSSRL 519 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~-~~~~~~~l 519 (601)
.|+++|.++++.++ .+.|+++++|||+|||++|++++++.+..... ...+.++|||+|+++|+.|+ +..|.+++
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----HTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----cCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 79999999999998 58999999999999999999999998765321 11237899999999999999 99999988
Q ss_pred CCCCcEEEEEeCCCccchh---hcCCccEEEEChhhHH-HHHcc----CCCCCccCCccEEEeccCcccCC
Q 007492 520 SPLNMIVRELTGDMQLSRN---ELEETQMIVTTPEKWD-VITRK----SSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 520 ~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTPekld-~l~r~----~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.. ++.+..++|+...... ....++|+|+||++|. .+.+. ...+.+ ..+++|||||||++..
T Consensus 82 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~-~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 82 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQL-SDFSLIIIDECHHTNK 150 (699)
T ss_dssp TT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCG-GGCSEEEEESGGGCBT
T ss_pred Cc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceec-ccCcEEEEECccccCc
Confidence 65 5889999998876532 2357999999999974 33221 112222 3589999999999864
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.72 E-value=2.5e-17 Score=190.28 Aligned_cols=128 Identities=25% Similarity=0.325 Sum_probs=106.2
Q ss_pred cCCCCCcHHHHHHHHHHHhc-----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT-----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~-----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.+| .|+++|.++++.++.. ..|++++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------g~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------GFQTAFMVPTSILAIQH 433 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----------TSCEEEECSCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEeCcHHHHHHH
Confidence 477 8999999999998742 2599999999999999999999998753 57999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 512 TRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 512 ~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
+..|.+++...|++|..++|+.....+. ...++|+|+||+.+.. . ..+ ..+++|||||+|++..
T Consensus 434 ~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~--~~~-~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 434 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----D--VHF-KNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----C--CCC-SCCCEEEEESCCCC--
T ss_pred HHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----h--hhc-cCCceEEecccchhhH
Confidence 9999999999999999999998765321 1359999999998732 1 222 3589999999999853
No 53
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.72 E-value=1.5e-17 Score=184.81 Aligned_cols=138 Identities=24% Similarity=0.311 Sum_probs=106.7
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 431 FAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 431 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.++..| ||..|+++|.++++.++ .++|++++||||+|||++|++|++. ...++|||+|+++|+.|
T Consensus 16 ~l~~~~-g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~-------------~~g~~lvi~P~~aL~~q 80 (523)
T 1oyw_A 16 VLQETF-GYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALL-------------LNGLTVVVSPLISLMKD 80 (523)
T ss_dssp HHHHTT-CCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHH-------------SSSEEEEECSCHHHHHH
T ss_pred HHHHHh-CCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHH-------------hCCCEEEECChHHHHHH
Confidence 333334 89999999999999998 6899999999999999999999874 13579999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCccchh-------hcCCccEEEEChhhHH--HHHccCCCCCccCCccEEEeccCcccC
Q 007492 511 VTRTFSSRLSPLNMIVRELTGDMQLSRN-------ELEETQMIVTTPEKWD--VITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 511 ~~~~~~~~l~~~~i~V~~l~Gd~~~~~~-------~~~~~~IiVtTPekld--~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
++..+.+ +|+.+..++|+...... ....++|+|+||+++. .+.... .. ..+++|||||||++.
T Consensus 81 ~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l-~~---~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 81 QVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHL-AH---WNPVLLAVDEAHCIS 152 (523)
T ss_dssp HHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHH-TT---SCEEEEEESSGGGGC
T ss_pred HHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHH-hh---CCCCEEEEeCccccC
Confidence 9999986 37888888887764321 1246899999999972 111111 11 258999999999997
Q ss_pred C---CChHHHHHH
Q 007492 582 D---DRGPVIEAL 591 (601)
Q Consensus 582 d---~rg~~le~i 591 (601)
+ ++.+.+..+
T Consensus 153 ~~g~~fr~~~~~l 165 (523)
T 1oyw_A 153 QWGHDFRPEYAAL 165 (523)
T ss_dssp TTSSCCCHHHHGG
T ss_pred cCCCccHHHHHHH
Confidence 5 366666543
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.71 E-value=9.3e-18 Score=191.70 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=108.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|| .|+++|..++|.++ .|+ +++|+||+|||++|.+|++.... .+..++||+||++||.|+...+.
T Consensus 80 lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL----------~g~~vlVltptreLA~qd~e~~~ 145 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNAL----------TGKGVHVVTVNEYLASRDAEQMG 145 (844)
T ss_dssp HSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHT----------TSSCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHHHHHHHH
Confidence 589 99999999999987 566 99999999999999999984332 24679999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh-cCCccEEEEChhhH--HHHHccCC----CCCccCCccEEEeccCcccC-CC
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE-LEETQMIVTTPEKW--DVITRKSS----DMSLSMLVKLLIIDEVHLLN-DD 583 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~-~~~~~IiVtTPekl--d~l~r~~~----~~~~~~~v~llIiDEaH~l~-d~ 583 (601)
.++..+|++|..++|+++...+. ..+++|+|+||+++ |.+...-. .+. .+.+.++||||||.|+ |+
T Consensus 146 ~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~-lr~~~~lVlDEaD~mLiDe 219 (844)
T 1tf5_A 146 KIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMV-QRPLHFAVIDEVDSILIDE 219 (844)
T ss_dssp HHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC-CCCCCEEEEETHHHHHTTT
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhc-ccCCCEEEECchhhhhhhc
Confidence 99888999999999998764332 24699999999996 66554321 222 2368999999999987 53
No 55
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.69 E-value=2.5e-17 Score=187.74 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=107.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|. .|+++|..++|.++ .|+ ++.|+||+|||++|.+|++.... .+.++++|+||++||.|++..+.
T Consensus 71 lg~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l----------~g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNAL----------TGKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HSC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHT----------TSSCCEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHH----------cCCcEEEEcCCHHHHHHHHHHHH
Confidence 365 89999999999987 565 99999999999999999986442 25689999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh-cCCccEEEEChhhH--HHHHccCC----CCCccCCccEEEeccCcccCCCC-----
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE-LEETQMIVTTPEKW--DVITRKSS----DMSLSMLVKLLIIDEVHLLNDDR----- 584 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~-~~~~~IiVtTPekl--d~l~r~~~----~~~~~~~v~llIiDEaH~l~d~r----- 584 (601)
.++..+|++|..++|+++...+. ..+++|+|+||+++ |.+..+.. .+. .+.++++||||||.|+.+.
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~-~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERV-QRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC-CCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhc-ccCCcEEEECchHHHHHhcCcccc
Confidence 99998999999999998764332 34699999999995 76664421 122 2469999999999998432
Q ss_pred ------------hHHHHHHHHHHHh
Q 007492 585 ------------GPVIEALVARTLR 597 (601)
Q Consensus 585 ------------g~~le~iv~r~~r 597 (601)
-..+..|+.++++
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEEEC--------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchh
Confidence 2466677777654
No 56
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.69 E-value=1.3e-16 Score=172.04 Aligned_cols=129 Identities=24% Similarity=0.300 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+++|.++++.++. + ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.+.+.
T Consensus 9 ~l~~~Q~~~i~~~~~-~-~~ll~~~tG~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE-T-NCLIVLPTGLGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGG-S-CEEEECCTTSCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhh-C-CEEEEcCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 799999999999884 5 99999999999999999999887652 467899999999999999999999875
Q ss_pred CCCcEEEEEeCCCccchh--hcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 521 PLNMIVRELTGDMQLSRN--ELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~--~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
..+..+..++|+...... ....++|+|+||+.+ ..+.++.... ..+++|||||||++.+.
T Consensus 78 ~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~---~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISL---EDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp SCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCT---TSCSEEEEETGGGCSTT
T ss_pred cchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcch---hhceEEEEECCcccCCC
Confidence 455689999998765432 234689999999997 3444332222 35899999999999863
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.65 E-value=2.7e-16 Score=179.71 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=107.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+ .|+++|..++|.++ .|+ +++|+||+|||++|.+|++.... .+..++||+||++||.|+...+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL----------~g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNAL----------AGNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHT----------TTSCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHH----------hCCCeEEEeCCHHHHHHHHHHHH
Confidence 588 89999999999987 565 99999999999999999965432 24579999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchhh-cCCccEEEEChhhH--HHHHccCC----CCCccCCccEEEeccCcccCC
Q 007492 517 SRLSPLNMIVRELTGDMQLSRNE-LEETQMIVTTPEKW--DVITRKSS----DMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~~-~~~~~IiVtTPekl--d~l~r~~~----~~~~~~~v~llIiDEaH~l~d 582 (601)
.++..+|++|++++|+++...+. ..+++|+|+||++| |.+..+-. .+. .+.+.++||||||.|+.
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~-lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLV-QRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC-CCCCCEEEETTHHHHHT
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhc-cCCCCEEEEeChHHHHH
Confidence 99988999999999998754332 34689999999995 77665421 222 23589999999999984
No 58
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.64 E-value=4.5e-16 Score=177.34 Aligned_cols=132 Identities=16% Similarity=0.085 Sum_probs=108.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+ .|+++|..++|.++ .|. +++|+||+|||++|.+|++.... .+..+++|+||++||.|.+..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL----------~G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNAL----------TGKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHT----------TCSCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHH----------hCCCEEEEeCCHHHHHHHHHHHH
Confidence 688 89999999999987 565 89999999999999999964332 24589999999999999999999
Q ss_pred hhcCCCCcEEEEEeCCCccchh-hcCCccEEEEChhhH--HHHHccC----CCCCcc--CCccEEEeccCcccCC
Q 007492 517 SRLSPLNMIVRELTGDMQLSRN-ELEETQMIVTTPEKW--DVITRKS----SDMSLS--MLVKLLIIDEVHLLND 582 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd~~~~~~-~~~~~~IiVtTPekl--d~l~r~~----~~~~~~--~~v~llIiDEaH~l~d 582 (601)
.++..+|++|..++|+++...+ ...+++|+|+||+++ |.+..+. ..+.+. ..+.++||||+|.|+.
T Consensus 142 ~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 142 PVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 9999999999999999875422 335799999999995 6666552 122222 1589999999999874
No 59
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.64 E-value=8.3e-16 Score=153.51 Aligned_cols=115 Identities=29% Similarity=0.338 Sum_probs=93.6
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..|+++|.++++.++ .+.++++++|||+|||.+|+.++... +.+++|++|+++|+.|+.+.+.+ +
T Consensus 92 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~liv~P~~~L~~q~~~~~~~-~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGI-F 156 (237)
T ss_dssp CCCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS-------------CSCEEEEESSHHHHHHHHHHHGG-G
T ss_pred CCcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHh-C
Confidence 489999999999987 56789999999999999998877641 46899999999999999999987 3
Q ss_pred CCCCcE-EEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 520 SPLNMI-VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 520 ~~~~i~-V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
++. +..++|+... ..+|+|+||+.+...... +...+++|||||+|++.+.
T Consensus 157 ---~~~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp ---CGGGEEEESSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT
T ss_pred ---CCCeEEEEeCCCCC------cCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCCh
Confidence 677 8888887653 478999999986332221 1234889999999999863
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.63 E-value=2e-15 Score=181.68 Aligned_cols=137 Identities=18% Similarity=0.267 Sum_probs=107.8
Q ss_pred cCCCCCcHHHHHHHHHHHhc---CC--ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT---NE--NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~---~~--n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
.+| .++++|.++++.++.. +. |+++|||||+|||.+|+++++..+. .+.+++|++||++||.|+
T Consensus 600 f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------~g~~vlvlvPt~~La~Q~ 668 (1151)
T 2eyq_A 600 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------NHKQVAVLVPTTLLAQQH 668 (1151)
T ss_dssp CCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------TTCEEEEECSSHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------hCCeEEEEechHHHHHHH
Confidence 356 4799999999998852 54 9999999999999999999887653 356999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCC
Q 007492 512 TRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDR 584 (601)
Q Consensus 512 ~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~r 584 (601)
+..|.+++...+++|..++|........ ...++|+|+||+.+. +. ..+ ..+++|||||+|++
T Consensus 669 ~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~--~~~-~~l~lvIiDEaH~~---- 737 (1151)
T 2eyq_A 669 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SD--VKF-KDLGLLIVDEEHRF---- 737 (1151)
T ss_dssp HHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SC--CCC-SSEEEEEEESGGGS----
T ss_pred HHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CC--ccc-cccceEEEechHhc----
Confidence 9999999998899999999876543221 135999999998652 22 222 35899999999996
Q ss_pred hHHHHHHHHHH
Q 007492 585 GPVIEALVART 595 (601)
Q Consensus 585 g~~le~iv~r~ 595 (601)
|.....++..+
T Consensus 738 g~~~~~~l~~l 748 (1151)
T 2eyq_A 738 GVRHKERIKAM 748 (1151)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHh
Confidence 44444555444
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.61 E-value=1.4e-15 Score=166.08 Aligned_cols=113 Identities=29% Similarity=0.343 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+++|.++++.++ .+.++++++|||+|||.+|++++... +.++|||+|+++|+.|++..|.+ +
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~-~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGI-F- 156 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGG-G-
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHh-C-
Confidence 79999999999987 56789999999999999999988753 45899999999999999999988 3
Q ss_pred CCCcE-EEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 521 PLNMI-VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 521 ~~~i~-V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
++. |..++|+... .++|+|+||+.+...... +...+++|||||+|++.+
T Consensus 157 --~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp --CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTS
T ss_pred --CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCC
Confidence 788 8888887653 478999999996332221 112488999999999986
No 62
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=147.86 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=93.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.++++|.++++.+. .|++++++||||||||.++.++++..+..... ....+++|++|+++|+.|+.+++...+.
T Consensus 61 p~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-----~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 61 PVKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-----AAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp GGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-----GGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-----CCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 57899999999987 79999999999999999998888876654211 1346999999999999999999987664
Q ss_pred -CCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCccc
Q 007492 521 -PLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 521 -~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l 580 (601)
..+..++.-...... ....+++|+||||+++ +.+.. . ...+++|||||||.+
T Consensus 135 ~~~~~~~g~~~~~~~~--~~~~~~~Ivv~Tpg~l~~~l~~---~---l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 135 EEPGKSCGYSVRFESI--LPRPHASIMFCTVGVLLRKLEA---G---IRGISHVIVDEIHER 188 (235)
T ss_dssp CCTTSSEEEEETTEEE--CCCSSSEEEEEEHHHHHHHHHH---C---CTTCCEEEECCTTSC
T ss_pred cccCceEEEeechhhc--cCCCCCeEEEECHHHHHHHHHh---h---hcCCcEEEEECCccC
Confidence 345555432221111 1114589999999996 55443 1 236999999999985
No 63
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.59 E-value=4e-16 Score=170.22 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=94.8
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
|+..++|+|. ++|.++..+.+++++||||||||.+|++|++..+.. .+.++||++||++||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEMEEALR- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHHHHHhc-
Confidence 6778999985 799998555555999999999999999999987654 46799999999999999999874
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHH
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVA 593 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~ 593 (601)
|+.+....+.. ......+..|.++||+.+......... ...+++|||||||++...+...++.+..
T Consensus 70 -----g~~v~~~~~~~--~~~~~~~~~i~~~t~~~l~~~l~~~~~---l~~~~~iViDEah~~~~~~~~~~~~~~~ 135 (451)
T 2jlq_A 70 -----GLPIRYQTPAV--KSDHTGREIVDLMCHATFTTRLLSSTR---VPNYNLIVMDEAHFTDPCSVAARGYIST 135 (451)
T ss_dssp -----TSCEEECCTTC--SCCCCSSCCEEEEEHHHHHHHHHHCSC---CCCCSEEEEETTTCCSHHHHHHHHHHHH
T ss_pred -----Cceeeeeeccc--cccCCCCceEEEEChHHHHHHhhCccc---ccCCCEEEEeCCccCCcchHHHHHHHHH
Confidence 33343222221 112234567999999986322222222 2368999999999883233444444433
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.54 E-value=1.1e-15 Score=172.56 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcE
Q 007492 446 QSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMI 525 (601)
Q Consensus 446 Q~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~ 525 (601)
|++.++.++..+++++++||||||||.+|.++++. .+.+++|++|||+||.|+++.+.+.+ +..
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~ 284 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKAH---GID 284 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHHH---SCC
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHHh---CCC
Confidence 33444455557889999999999999999998875 25689999999999999999887765 455
Q ss_pred EEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHH
Q 007492 526 VRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTL 596 (601)
Q Consensus 526 V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~ 596 (601)
+...+|+... ..+++|+|+||++| +.+....+ ..+++|||||||++...+...+..|+..+.
T Consensus 285 vg~~vG~~~~----~~~~~IlV~TPGrL--l~~~~l~l---~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 285 PNIRTGVRTI----TTGAPVTYSTYGKF--LADGGCSG---GAYDIIICDECHSTDSTTILGIGTVLDQAE 346 (666)
T ss_dssp CEEECSSCEE----CCCCSEEEEEHHHH--HHTTSCCT---TSCSEEEETTTTCCSHHHHHHHHHHHHHTT
T ss_pred eeEEECcEec----cCCCCEEEECcHHH--HhCCCccc---CcccEEEEccchhcCccHHHHHHHHHHhhh
Confidence 6777787653 34689999999997 33333222 259999999998876556666777766554
No 65
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.54 E-value=1e-14 Score=163.00 Aligned_cols=127 Identities=23% Similarity=0.258 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHH---HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTV---YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~---l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.++|.|.+++..+ +..+++++++||||+|||.+|++|++. .+.+++|++||++|+.|+.+.+.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------------~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------------VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------------HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------------CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 6899999977654 346899999999999999999999987 156999999999999999999988
Q ss_pred hcCCCCcEEEEEeCCCccc------------------------------------------------------hhhcCCc
Q 007492 518 RLSPLNMIVRELTGDMQLS------------------------------------------------------RNELEET 543 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~------------------------------------------------------~~~~~~~ 543 (601)
.....++++..++|...+- +.....+
T Consensus 70 l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 70 IREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred HhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 7776788888888743210 1112468
Q ss_pred cEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 544 QMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 544 ~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
+||||||..+ +...+.... +.....++||||||.|.+
T Consensus 150 dIVV~~~~~l~~~~~~~~~~--~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREFID--IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTTSC--CCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHhcC--CCcCCeEEEEecccchHH
Confidence 9999999996 444444322 222468999999999987
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.51 E-value=1.3e-14 Score=163.26 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCCcHHHHHHHHHHHh----cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH-HH
Q 007492 440 KSLNRIQSRIFQTVYY----TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT-RT 514 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~----~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~-~~ 514 (601)
..|+++|.++++.++. .+.++++++|||+|||.+++..+...+...+.. .......++|||+|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~-~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNR-TGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCS-SCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhccccc-ccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999999874 356799999999999999766554444321110 00124679999999999999988 65
Q ss_pred HHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccC---CCCCccCCccEEEeccCcccCCCChHHHHHH
Q 007492 515 FSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKS---SDMSLSMLVKLLIIDEVHLLNDDRGPVIEAL 591 (601)
Q Consensus 515 ~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~---~~~~~~~~v~llIiDEaH~l~d~rg~~le~i 591 (601)
|.. ++..+..+.++. .....+|+|+||+++....... ..+. ...+++|||||||++....+..+..+
T Consensus 256 ~~~----~~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~-~~~~~lvIiDEaH~~~~~~~~~~~~i 325 (590)
T 3h1t_A 256 FTP----FGDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFP-QDFFDLIIIDECHRGSARDNSNWREI 325 (590)
T ss_dssp CTT----TCSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSC-TTSCSEEEESCCC---------CHHH
T ss_pred HHh----cchhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCC-CCccCEEEEECCccccccchHHHHHH
Confidence 554 344455444432 1245799999999973322111 1111 12488999999999986444566666
Q ss_pred HHHHH
Q 007492 592 VARTL 596 (601)
Q Consensus 592 v~r~~ 596 (601)
+..+.
T Consensus 326 l~~~~ 330 (590)
T 3h1t_A 326 LEYFE 330 (590)
T ss_dssp HHHST
T ss_pred HHhCC
Confidence 65543
No 67
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.50 E-value=7.9e-15 Score=165.88 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=98.9
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
...++|+|+.+++.+. .++|++++||||||||.+|++|+++.+.. .+.++||++|||+||.|+++.|.
T Consensus 169 ~~~~lpiq~~~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~~~~vLvl~PtreLa~Qi~~~l~-- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALK---------RRLRTLILAPTRVVAAEMEEALR-- 236 (618)
T ss_dssp CCCCCCCCCCCGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT--
T ss_pred cccCCCccccCHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCeEEEEcChHHHHHHHHHHhc--
Confidence 4678899888877765 79999999999999999999999998865 46799999999999999998875
Q ss_pred cCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHHH
Q 007492 519 LSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTL 596 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~~ 596 (601)
+..+. +.+.. +....-.+..+.++|.+.+......... ...+++|||||||++...+...+..|+.+++
T Consensus 237 ----~~~v~-~~~~~-l~~~~tp~~~i~~~t~~~l~~~l~~~~~---l~~~~~iViDEah~~~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 237 ----GLPIR-YQTPA-VKSDHTGREIVDLMCHATFTTRLLSSTR---VPNYNLIVMDEAHFTDPCSVAARGYISTRVE 305 (618)
T ss_dssp ----TSCEE-ECCTT-SSCCCCSSSCEEEEEHHHHHHHHHHCSS---CCCCSEEEEESTTCCSHHHHHHHHHHHHHHH
T ss_pred ----CCcee-Eeccc-ceeccCCCceEEEEChHHHHHHHhcccc---ccCCeEEEEECCCCCCccHHHHHHHHHHHhc
Confidence 23343 22221 1111112456777888876332222222 2369999999999994456677777777664
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.45 E-value=1.4e-13 Score=156.63 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=87.8
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQL 535 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~ 535 (601)
.+++++++||||||||..++ +.+.. ..+.+|++|||+||.|++++|.++ |+.|..++|+...
T Consensus 154 ~rk~vlv~apTGSGKT~~al----~~l~~----------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAI----QKYFS----------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHH----HHHHH----------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred CCCEEEEEcCCCCCHHHHHH----HHHHh----------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 57899999999999998443 33333 123599999999999999999874 7889999998765
Q ss_pred chh-hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC-CChHHHHHHHHHHH
Q 007492 536 SRN-ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 596 (601)
Q Consensus 536 ~~~-~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d-~rg~~le~iv~r~~ 596 (601)
... .-...+++++|++.++ +...+++|||||+|++.+ +||..++.++.+++
T Consensus 216 iv~TpGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~ 268 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC
T ss_pred EecCCCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC
Confidence 221 1123789999998753 223589999999999988 69999998888765
No 69
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.43 E-value=1.4e-13 Score=153.46 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=86.1
Q ss_pred cCCCCCcHHHHHHHHHH---HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTV---YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~---l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
.|| .|+++|.+++..+ +..+++++++||||+|||.+|++|++.. +.+++|++||++|+.|+++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------------TCEEEEEESCHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------------CCcEEEEcCCHHHHHHHHH
Confidence 467 8999999987654 3468999999999999999999998752 4699999999999999998
Q ss_pred HHHhhcCCCCcEEEEEeCCCcc--------------------------------------------------chhhcCCc
Q 007492 514 TFSSRLSPLNMIVRELTGDMQL--------------------------------------------------SRNELEET 543 (601)
Q Consensus 514 ~~~~~l~~~~i~V~~l~Gd~~~--------------------------------------------------~~~~~~~~ 543 (601)
.+.++ ++++..+.|...+ .+.....+
T Consensus 70 ~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGG----TCCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 88662 4444444442110 01123468
Q ss_pred cEEEEChhhH-HHHHccCCC----CCccCCccEEEeccCcccC
Q 007492 544 QMIVTTPEKW-DVITRKSSD----MSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 544 ~IiVtTPekl-d~l~r~~~~----~~~~~~v~llIiDEaH~l~ 581 (601)
+|||+||..+ +...++... ..+.....++||||||.|.
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999995 434333211 1122247899999999994
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.43 E-value=1.1e-13 Score=151.18 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=76.8
Q ss_pred HHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEe
Q 007492 451 QTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELT 530 (601)
Q Consensus 451 ~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~ 530 (601)
+.++.++++++++||||||||.+|++|+++.+.. .+.++||++|||+||.|++..+. |..+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhc------CceEeEEe
Confidence 5556678999999999999999999999988764 46799999999999999999885 33343322
Q ss_pred CCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcccC
Q 007492 531 GDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 531 Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
+.... ..-.+.-+.++|.+.+ ..+... .. ...+++|||||||.+.
T Consensus 80 ~~~~~--~~t~~~~i~~~~~~~l~~~l~~~-~~---l~~~~~iViDEaH~~~ 125 (459)
T 2z83_A 80 SAVQR--EHQGNEIVDVMCHATLTHRLMSP-NR---VPNYNLFVMDEAHFTD 125 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC-C----CCCCSEEEESSTTCCS
T ss_pred ccccc--CCCCCcEEEEEchHHHHHHhhcc-cc---ccCCcEEEEECCccCC
Confidence 22211 1112345777888875 223222 22 2369999999999863
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.40 E-value=1.5e-13 Score=149.54 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=71.7
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDM 533 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~ 533 (601)
+.+|+|++++||||||||.+|++++++.+.. .+.+++|++||++||.|+++.+.. +.+...++..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~------~~v~~~~~~~ 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHG------LDVKFHTQAF 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTT------SCEEEESSCC
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhc------CCeEEecccc
Confidence 3478999999999999999999999998765 467999999999999999998863 2233222221
Q ss_pred ccchhhcCCccEEEEChhhH-HHHH-----ccCCCCCccCCccEEEeccCccc
Q 007492 534 QLSRNELEETQMIVTTPEKW-DVIT-----RKSSDMSLSMLVKLLIIDEVHLL 580 (601)
Q Consensus 534 ~~~~~~~~~~~IiVtTPekl-d~l~-----r~~~~~~~~~~v~llIiDEaH~l 580 (601)
. .|+||+++ +.+. ...........+++|||||+|++
T Consensus 70 ~-----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 70 S-----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp C-----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred e-----------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc
Confidence 1 37777653 2111 11111112346999999999999
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.40 E-value=3.9e-13 Score=145.78 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~ 536 (601)
+++++++||||||||.+|++++++.+.. .+.+++|++||++||.|++..|. |+.|..++|....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-
Confidence 6899999999999999999999976654 46799999999999999998774 4556666665322
Q ss_pred hhhcCCccEEEEChhhHH-HHHccCCCCCccCCccEEEeccCcccC
Q 007492 537 RNELEETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 537 ~~~~~~~~IiVtTPekld-~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
..-.+..+.+.|.+.+. .+.. ...+ ..+++|||||+|++.
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~-~~~~---~~l~~vViDEaH~~~ 106 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ-GVRV---PNYNLYIMDEAHFLD 106 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH-TCCC---CCCSEEEEESTTCCS
T ss_pred -cCCCCceEEEEchHHHHHHHhc-Cccc---cCCCEEEEeCCccCC
Confidence 11123456677888762 2332 2222 358999999999973
No 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.39 E-value=1.7e-14 Score=164.49 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCcHHHH-----HHHHHHH-----hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 441 SLNRIQS-----RIFQTVY-----YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 441 ~l~~iQ~-----~~i~~~l-----~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.|+++|. +++|.++ ..++|++++||||||||.+|++++++.+.. .+.++||++||++||.|
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---------~~~~~lilaPTr~La~Q 285 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---------KRLRTAVLAPTRVVAAE 285 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCcEEEEccHHHHHHH
Confidence 8999999 8998765 368999999999999999999999988764 46799999999999999
Q ss_pred HHHHHHh
Q 007492 511 VTRTFSS 517 (601)
Q Consensus 511 ~~~~~~~ 517 (601)
+++.+..
T Consensus 286 ~~~~l~~ 292 (673)
T 2wv9_A 286 MAEALRG 292 (673)
T ss_dssp HHHHTTT
T ss_pred HHHHHhc
Confidence 9988864
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.38 E-value=7.2e-13 Score=157.05 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=95.7
Q ss_pred CCcHHHHHHHHHHHhc-------------CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 441 SLNRIQSRIFQTVYYT-------------NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-------------~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.|+++|..|++.++.. +++.++++|||||||+++ +++++.+... ....++|||||+++|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-------~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-------DFIDKVFFVVDRKDL 342 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-------TTCCEEEEEECGGGC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-------CCCceEEEEeCcHHH
Confidence 5999999999998741 368999999999999997 5566655431 124699999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCccc--hhhc--CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCC
Q 007492 508 AAEVTRTFSSRLSPLNMIVRELTGDMQLS--RNEL--EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDD 583 (601)
Q Consensus 508 a~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~--~~~~--~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~ 583 (601)
+.|+...|.++.... +.|..+.. ...+ ...+|+||||+++..+..............+||+||||++.
T Consensus 343 ~~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~-- 414 (1038)
T 2w00_A 343 DYQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ-- 414 (1038)
T ss_dssp CHHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH--
T ss_pred HHHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc--
Confidence 999999998865421 12222211 1112 46899999999985443322212122247899999999987
Q ss_pred ChHHHHHHHHHH
Q 007492 584 RGPVIEALVART 595 (601)
Q Consensus 584 rg~~le~iv~r~ 595 (601)
.|..+..|...+
T Consensus 415 ~~~~~~~I~~~~ 426 (1038)
T 2w00_A 415 FGEAQKNLKKKF 426 (1038)
T ss_dssp HHHHHHHHHHHC
T ss_pred chHHHHHHHHhC
Confidence 345555555443
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.33 E-value=3.2e-12 Score=140.41 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=92.2
Q ss_pred CCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|+|+|.++++.+. ..+.++++++|||+|||.+++..+...... ....++||||| .+|+.|+..+|.+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--------~~~~~~LIv~P-~~l~~qw~~e~~~ 107 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--------NELTPSLVICP-LSVLKNWEEELSK 107 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--------TCCSSEEEEEC-STTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCCCCEEEEcc-HHHHHHHHHHHHH
Confidence 79999999987653 357899999999999999976655443322 23468999999 5799999999998
Q ss_pred hcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCC
Q 007492 518 RLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDR 584 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~r 584 (601)
.+. +.++..++|+.. .......+|+|+||+.+..... +.. ..+++||+||||++....
T Consensus 108 ~~~--~~~v~~~~g~~~--~~~~~~~~ivi~t~~~l~~~~~----l~~-~~~~~vIvDEaH~~kn~~ 165 (500)
T 1z63_A 108 FAP--HLRFAVFHEDRS--KIKLEDYDIILTTYAVLLRDTR----LKE-VEWKYIVIDEAQNIKNPQ 165 (500)
T ss_dssp HCT--TSCEEECSSSTT--SCCGGGSSEEEEEHHHHTTCHH----HHT-CCEEEEEEETGGGGSCTT
T ss_pred HCC--CceEEEEecCch--hccccCCcEEEeeHHHHhccch----hcC-CCcCEEEEeCccccCCHh
Confidence 775 456777777653 2234568999999998721111 111 137899999999997643
No 76
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.32 E-value=2.4e-12 Score=149.04 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=87.2
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..|+++|.++++.++..+++++++||||||||. ++|++-.... .. ...+.+++|++|+++||.|++..+...+
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-~~----~~~g~~ilvl~P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-MP----HLENTQVACTQPRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-CG----GGGTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-cc----cCCCceEEecCchHHHHHHHHHHHHHHh
Confidence 679999999999999888999999999999999 3444421111 11 0125689999999999999999887665
Q ss_pred C-CCCcEEEEEeCCCccchhhcCCccEEEEChhhH-HHHHccCCCCCccCCccEEEeccCcc
Q 007492 520 S-PLNMIVRELTGDMQLSRNELEETQMIVTTPEKW-DVITRKSSDMSLSMLVKLLIIDEVHL 579 (601)
Q Consensus 520 ~-~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl-d~l~r~~~~~~~~~~v~llIiDEaH~ 579 (601)
. ..+..++.- ..........++|+|+||+++ ..+... . +...+++|||||+|.
T Consensus 165 ~~~v~~~vG~~---i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~---~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 165 DVKLGEEVGYS---IRFENKTSNKTILKYMTDGMLLREAMED-H---DLSRYSCIILDEAHE 219 (773)
T ss_dssp TCCBTTTEEEE---ETTEEECCTTCSEEEEEHHHHHHHHHHS-T---TCTTEEEEEECSGGG
T ss_pred CCchhheecce---eccccccCCCCCEEEECHHHHHHHHhhC-c---cccCCCEEEecCccc
Confidence 3 223333211 111112234689999999996 344332 2 233699999999995
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.24 E-value=7.3e-12 Score=148.58 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=93.9
Q ss_pred CCCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 440 KSLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
..|+|+|..++..++.. +.++|++++||+|||.+++..+...+.. ....++|||||+ +|+.|+..+|.+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------g~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--------GAAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--------SSCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--------CCCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 37999999999888743 4589999999999999998877665543 134589999999 9999999999887
Q ss_pred cCCCCcEEEEEeCCCccc-----hhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 519 LSPLNMIVRELTGDMQLS-----RNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 519 l~~~~i~V~~l~Gd~~~~-----~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
+ ++.+..++|+.... .......+|+|||++.+..-......+. ...+++|||||+|++..
T Consensus 223 f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~-~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 223 F---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC-EAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp S---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH-TSCCCEEEECCSSCCCC
T ss_pred h---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhh-hcCCCEEEehhhHhhcC
Confidence 6 56666666654221 1223467999999997631110000011 12478999999999975
No 78
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.20 E-value=1.1e-11 Score=140.17 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHH---HhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTV---YYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~---l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|++.|.+....+ +..+++++++||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 6789999988754 4469999999999999999999999998764 357999999999999999999887
Q ss_pred hcCCCCcEEEEEeC
Q 007492 518 RLSPLNMIVRELTG 531 (601)
Q Consensus 518 ~l~~~~i~V~~l~G 531 (601)
.....++++..++|
T Consensus 74 l~~~~~~~~~~l~g 87 (620)
T 4a15_A 74 LSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHSCCCEEECCC
T ss_pred HhhccCeEEEEEEC
Confidence 66544666666555
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.05 E-value=1.1e-09 Score=124.38 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHH--------hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 441 SLNRIQSRIFQTVY--------YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l--------~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
.|+|+|.+++..++ ..+.+.|++.+||+|||..++..+...+..... ......++|||||+ +|+.|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~---~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD---CKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT---SSCSCSCEEEEECH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc---ccCCCCcEEEEecH-HHHHHHH
Confidence 79999999998775 245678999999999999988777665543210 11123579999996 8999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccch-h----hc------CCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 513 RTFSSRLSPLNMIVRELTGDMQLSR-N----EL------EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~Gd~~~~~-~----~~------~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
.+|.+.+.. .+.+..++|+..... . .. ..++|+|+|++.+......... ...++||+||+|++-
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~----~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHK----GKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTT----SCCCEEEETTGGGCC
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhc----CCccEEEEECceecC
Confidence 999988754 455666666543211 1 01 2478999999987432221111 147899999999997
Q ss_pred CCCh
Q 007492 582 DDRG 585 (601)
Q Consensus 582 d~rg 585 (601)
....
T Consensus 206 n~~~ 209 (644)
T 1z3i_X 206 NSDN 209 (644)
T ss_dssp TTCH
T ss_pred Chhh
Confidence 6433
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.03 E-value=5.8e-10 Score=129.88 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHH---hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 441 SLNRIQSRIFQTVY---YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l---~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|+++|.+++..++ ..+.+.|++.+||+|||.+++..+...+... .....+||||| .+|+.|+..+|.+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 79999999997543 4688999999999999999877665544332 23457899999 8899999999988
Q ss_pred hcCCCCcEEEEEeCCCccch---------------hhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 518 RLSPLNMIVRELTGDMQLSR---------------NELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 518 ~l~~~~i~V~~l~Gd~~~~~---------------~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
.+. ++.|..++|+..... .....++|+|+|++.+.......... ..++|||||||++-.
T Consensus 308 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~----~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 308 WAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSI----KWQFMAVDEAHRLKN 381 (800)
T ss_dssp HST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTS----EEEEEEETTGGGGCC
T ss_pred HCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcC----CcceeehhhhhhhcC
Confidence 874 456777888654321 12246889999999973211111111 368999999999964
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.66 E-value=1.1e-07 Score=107.21 Aligned_cols=131 Identities=16% Similarity=0.037 Sum_probs=98.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+ .++++|...--.+. .|+ +..+.||+|||++|.+|++-... .+..+.+|+|+..||.+-...+.
T Consensus 72 lg~-r~~dvQligg~~L~-~G~--iaEM~TGEGKTLva~lp~~lnAL----------~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALH-EGK--VAEMKTGEGKTLAATMPIYLNAL----------IGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp TSC-CCCHHHHHHHHHHH-TTC--EEECCTTSCHHHHTHHHHHHHHT----------TSSCEEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHh-CCC--hhhccCCCCccHHHHHHHHHHHh----------cCCceEEEeccHHHHHhHHHHHH
Confidence 465 68999998887654 555 88999999999999999864332 36679999999999999999999
Q ss_pred hhcCCCCcEEEEEeCC--------------------------------------------------Ccc-chhhcCCccE
Q 007492 517 SRLSPLNMIVRELTGD--------------------------------------------------MQL-SRNELEETQM 545 (601)
Q Consensus 517 ~~l~~~~i~V~~l~Gd--------------------------------------------------~~~-~~~~~~~~~I 545 (601)
..+..+|++|++++.. +.. .++..-.|+|
T Consensus 138 ~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DI 217 (822)
T 3jux_A 138 PVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDV 217 (822)
T ss_dssp HHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSE
T ss_pred HHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCC
Confidence 9999999999998872 111 1222235899
Q ss_pred EEEChhhH--HHHHccC---CCCCccCCccEEEeccCcccC
Q 007492 546 IVTTPEKW--DVITRKS---SDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 546 iVtTPekl--d~l~r~~---~~~~~~~~v~llIiDEaH~l~ 581 (601)
..+|..-| |.+...- .+-...+...+.||||||.++
T Consensus 218 tYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 218 TYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred EEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 99999984 7766432 111233457899999999965
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.56 E-value=9e-08 Score=108.02 Aligned_cols=133 Identities=16% Similarity=0.261 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHhcCCceeEeccCCCchH--HHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 443 NRIQSRIFQTVYYTNENILVCAPTGAGKT--NIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT--~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
+++|..+++.++ ++..++++||+|+||| .+++++.+..+.. ..+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMAD--------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 789999999998 6889999999999999 4466666665421 2357899999999999999887765443
Q ss_pred CCCcEEEEEeCCCccchhhcCC-ccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 521 PLNMIVRELTGDMQLSRNELEE-TQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~~~~~-~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
.+++..... ..... .... ..++-.+|+... +.... .. .. .+++|||||++++. .+.++.|+..+
T Consensus 222 ~l~l~~~~~-~~~~~---~~~Tih~ll~~~~~~~~-~~~~~-~~-~l-~~d~lIIDEAsml~---~~~~~~Ll~~l 286 (608)
T 1w36_D 222 QLPLTDEQK-KRIPE---DASTLHRLLGAQPGSQR-LRHHA-GN-PL-HLDVLVVDEASMID---LPMMSRLIDAL 286 (608)
T ss_dssp HSSCCSCCC-CSCSC---CCBTTTSCC------------CT-TS-CC-SCSEEEECSGGGCB---HHHHHHHHHTC
T ss_pred cCCCCHHHH-hccch---hhhhhHhhhccCCCchH-HHhcc-CC-CC-CCCEEEEechhhCC---HHHHHHHHHhC
Confidence 333221100 00000 0011 122333444321 11111 11 11 48999999999554 45666666544
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.15 E-value=7.8e-06 Score=92.79 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
..||+-|.+|+..++.+..-.||.||.|+|||.+..-.|.+.+. .+.+|++++||..-|+++..++..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~----------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK----------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 37999999999999855556799999999999986655555443 357899999999999999988865
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.10 E-value=1e-05 Score=91.52 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=55.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
...+|+.|..++..++ .+...+|.||+|+|||.+..-.+ ..+.. ..+.++++++||...|.++...+.+
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~~i-~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIV-YHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHHHH-HHHHT--------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHHHH-HHHHH--------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4579999999999988 56788999999999999865433 33332 1467999999999999999888765
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.4e-05 Score=92.83 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=56.5
Q ss_pred CCCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 438 GYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.+..||+.|..|+..++ ++..++|.||.|+|||.+..-.+.+.+.. .+.++++++||...|.++..++.+
T Consensus 357 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~~i~~l~~~---------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIVYHLSKI---------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp TSCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHHHHHHHHHH---------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHHHhC---------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 34679999999999987 46678999999999999865544333221 356899999999999999998876
Q ss_pred h
Q 007492 518 R 518 (601)
Q Consensus 518 ~ 518 (601)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 4
No 86
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.00 E-value=2.7e-05 Score=84.62 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=52.8
Q ss_pred cCCCCCcHHHHHHHHHHHhc----CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYYT----NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~~----~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
..|..||+-|.+++..++.. ..+++|.||.|+|||.+.. .++..+... ...++++++||...|.++.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~--------~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALIST--------GETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHT--------TCCCEEEEESSHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhc--------CCceEEEecCcHHHHHHHH
Confidence 45778999999999887543 3499999999999997753 344444431 2247999999999988876
Q ss_pred HHH
Q 007492 513 RTF 515 (601)
Q Consensus 513 ~~~ 515 (601)
...
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.90 E-value=3.8e-05 Score=89.12 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 439 YKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 439 ~~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
...+|+.|..|+..++ .+...+|.||+|+|||.+..- ++..+.. ..+.++++++||...|.++...+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~~-~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHHH-HHHHHHT--------TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHHH-HHHHHHH--------cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4578999999999988 466789999999999998544 3333332 1457899999999999999888765
No 88
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.72 E-value=5.4e-05 Score=84.67 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.|++.|..++..++ ++..++|.+|.|+|||.+.. .++..+.. .+.++++++||...+..+....
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~-~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTK-AVADLAES---------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHH-HHHHHHHH---------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHH-HHHHHHHh---------cCCeEEEecCcHHHHHHhHhhh
Confidence 68999999999987 67899999999999998743 34444433 4678999999999998876644
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.18 E-value=0.00056 Score=77.05 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+-|.+++. ..+..++|.||.|||||.+..--+.+.+..+ + .+..+++++++|+..+.++..++.+.+
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~---~---~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE---N---CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS---C---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC---C---CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 479999999996 2478899999999999999777666665431 1 134689999999999999999998876
Q ss_pred CC--CCcEEEEEe
Q 007492 520 SP--LNMIVRELT 530 (601)
Q Consensus 520 ~~--~~i~V~~l~ 530 (601)
.. .++.|..++
T Consensus 79 ~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 79 GTSQGGMWVGTFH 91 (647)
T ss_dssp CSCCTTCEEEEHH
T ss_pred ccccCCcEEEcHH
Confidence 43 344554443
No 90
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.83 E-value=0.0063 Score=68.13 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=81.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+|+|..++..+. ..+.+++.+|-|+|||.+....++..+.. .++.++++++|++..|.++...+...+.
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHT--------SSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHh--------CCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 58999999998763 56778999999999999876655554443 2456899999999999999988887765
Q ss_pred CCC--cE--EEEEeCCCccchhhcCCccEEEE--ChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHH
Q 007492 521 PLN--MI--VRELTGDMQLSRNELEETQMIVT--TPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEAL 591 (601)
Q Consensus 521 ~~~--i~--V~~l~Gd~~~~~~~~~~~~IiVt--TPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~i 591 (601)
..+ +. .... +...+.- ..+..|.+. .|..+. +. ...++|+||+|.+-+. ...++.+
T Consensus 234 ~~p~~~~~~~~~~-~~~~i~~--~nGs~i~~~s~~~~~lr----G~-------~~~~~iiDE~~~~~~~-~~l~~~~ 295 (592)
T 3cpe_A 234 LLPDFLQPGIVEW-NKGSIEL--DNGSSIGAYASSPDAVR----GN-------SFAMIYIEDCAFIPNF-HDSWLAI 295 (592)
T ss_dssp TSCTTTSCCEEEE-CSSEEEE--TTSCEEEEEECCHHHHH----HS-------CCSEEEEETGGGCTTH-HHHHHHH
T ss_pred hChHhhccccccC-CccEEEe--cCCCEEEEEeCCCCCcc----CC-------CcceEEEehhccCCch-hHHHHHH
Confidence 443 11 1111 1111110 123333333 243331 11 2679999999998652 2444444
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.82 E-value=0.0016 Score=73.94 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+... | .+..++++|+.|+..|.++..++.+.+.
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~---~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC---G---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHH---C---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhc---C---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 589999999864 478999999999999999777666666442 1 1346899999999999999999998875
Q ss_pred CC---CcEEEEEeC
Q 007492 521 PL---NMIVRELTG 531 (601)
Q Consensus 521 ~~---~i~V~~l~G 531 (601)
.. ++.|..+++
T Consensus 73 ~~~~~~~~v~Tfhs 86 (673)
T 1uaa_A 73 RKEARGLMISTFHT 86 (673)
T ss_dssp TTTTTTSEEEEHHH
T ss_pred cccccCCEEEeHHH
Confidence 42 455554443
No 92
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.68 E-value=0.01 Score=62.75 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.|+|+|..++..+. ..+-++++.|-+.|||.++...++..+.. .++..++|++|++.-|..+...+...+.
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--------~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHS--------SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHh--------CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 78999999998764 45668999999999999877766654432 2467899999999999988877776553
Q ss_pred CCC--c--EEEEEeCCCccchhhcCCccEEEEC--hhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHH
Q 007492 521 PLN--M--IVRELTGDMQLSRNELEETQMIVTT--PEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALV 592 (601)
Q Consensus 521 ~~~--i--~V~~l~Gd~~~~~~~~~~~~IiVtT--Pekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv 592 (601)
... + .+...+ ...+. ...+..|.+.+ |..+ ++. .+.++|+||+|.+-+. ...++.+.
T Consensus 234 ~~P~ll~~~~~~~~-~~~I~--f~nGs~i~~lsa~~~sl----rG~-------~~~~viiDE~a~~~~~-~el~~al~ 296 (385)
T 2o0j_A 234 LLPDFLQPGIVEWN-KGSIE--LDNGSSIGAYASSPDAV----RGN-------SFAMIYIEDCAFIPNF-HDSWLAIQ 296 (385)
T ss_dssp HSCTTTSCCEEEEC-SSEEE--ETTSCEEEEEECSHHHH----HTS-------CCSEEEEESGGGSTTH-HHHHHHHH
T ss_pred hChHhhhhhhccCC-ccEEE--eCCCCEEEEEECCCCCc----cCC-------CCCEEEechhhhcCCC-HHHHHHHH
Confidence 221 1 111111 11111 01233343333 3322 111 3679999999998741 34455443
No 93
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.67 E-value=0.0042 Score=70.60 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=57.4
Q ss_pred cCCCCCcHHHHHHHHHHHh---cCC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 437 HGYKSLNRIQSRIFQTVYY---TNE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 437 ~g~~~l~~iQ~~~i~~~l~---~~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
.+| .|+..|.+++..+.. .|. ..++.+.||||||+++.-.+ ... +..+|||+|++.+|.|++
T Consensus 5 ~~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~------------~~~~lvv~~~~~~A~ql~ 70 (664)
T 1c4o_A 5 RGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL------------GRPALVLAPNKILAAQLA 70 (664)
T ss_dssp CSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH------------TCCEEEEESSHHHHHHHH
T ss_pred CCC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh------------CCCEEEEecCHHHHHHHH
Confidence 456 899999999887643 243 46788999999999865433 322 225999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEe
Q 007492 513 RTFSSRLSPLNMIVRELT 530 (601)
Q Consensus 513 ~~~~~~l~~~~i~V~~l~ 530 (601)
..|..++... .|..+.
T Consensus 71 ~el~~~~~~~--~V~~fp 86 (664)
T 1c4o_A 71 AEFRELFPEN--AVEYFI 86 (664)
T ss_dssp HHHHHHCTTS--EEEECC
T ss_pred HHHHHHCCCC--eEEEcC
Confidence 9999987532 444443
No 94
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.61 E-value=0.0028 Score=72.76 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 440 KSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 440 ~~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
..||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+... | .+..++++|+.|+..|.++..++.+.+
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~---~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK---H---VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTT---C---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc---C---CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4699999998864 467999999999999999777676666531 1 134689999999999999999998876
Q ss_pred CC--CCcEEEEE
Q 007492 520 SP--LNMIVREL 529 (601)
Q Consensus 520 ~~--~~i~V~~l 529 (601)
.. .++.|..+
T Consensus 81 ~~~~~~~~v~Tf 92 (724)
T 1pjr_A 81 GGAAEDVWISTF 92 (724)
T ss_dssp GGGGTTSEEEEH
T ss_pred cccccCcEEeeH
Confidence 42 23444443
No 95
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.24 E-value=0.0064 Score=73.89 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.+|+-|.+++.. .+.+++|.|+.|||||.+.+--+++.+... ....+..++++|++|++.|.++..++...+.
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~----~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAE----ENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCS----SSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcC----CCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 689999999864 478999999999999999777777766542 1112345899999999999999999887653
Q ss_pred CCCcEEEEEeCCCccchhhcCCccEEEEChhhH--HHHHccCCCCCccCCccEEEeccCc
Q 007492 521 PLNMIVRELTGDMQLSRNELEETQMIVTTPEKW--DVITRKSSDMSLSMLVKLLIIDEVH 578 (601)
Q Consensus 521 ~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekl--d~l~r~~~~~~~~~~v~llIiDEaH 578 (601)
..... -.....+..+...-.++-|+|-..| .++.+......+...++ |+||..
T Consensus 83 ~~~~~---~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~--~~d~~~ 137 (1232)
T 3u4q_A 83 KELVQ---RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFR--IADQTE 137 (1232)
T ss_dssp HHHHH---STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCE--ECCHHH
T ss_pred HHhhc---CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCe--eCCHHH
Confidence 21000 0000011111111235678999885 44544333333333344 667644
No 96
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.11 E-value=0.0091 Score=64.20 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=53.3
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN 538 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~ 538 (601)
=.+|.|+.|+|||.... +.+ . ..+.+|++||++++.++.+.+.+. |. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~----------~~~~lVlTpT~~aa~~l~~kl~~~----~~--------~----- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-N----------FEEDLILVPGRQAAEMIRRRANAS----GI--------I----- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-C----------TTTCEEEESCHHHHHHHHHHHTTT----SC--------C-----
T ss_pred EEEEEcCCCCCHHHHHH----HHh-c----------cCCeEEEeCCHHHHHHHHHHhhhc----Cc--------c-----
Confidence 44789999999998742 211 1 135699999999999988777432 11 0
Q ss_pred hcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccC
Q 007492 539 ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 539 ~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
.....-|.|-+++- .+.. ..... ..++|||||+-+++
T Consensus 211 --~~~~~~V~T~dsfL--~~~~-~~~~~-~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 --VATKDNVRTVDSFL--MNYG-KGARC-QFKRLFIDEGLMLH 247 (446)
T ss_dssp --CCCTTTEEEHHHHH--HTTT-SSCCC-CCSEEEEETGGGSC
T ss_pred --ccccceEEEeHHhh--cCCC-CCCCC-cCCEEEEeCcccCC
Confidence 01223477877752 2221 11111 27899999999876
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.91 E-value=0.0079 Score=54.81 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.++.+++++|+|+|||..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 578999999999999987544
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.67 E-value=0.019 Score=56.05 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=29.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
.|.-+++++|+|+|||..++-.+.+ +.. .+.+++|+.|...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r-~~~---------~g~kVli~~~~~d 51 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR-LEY---------ADVKYLVFKPKID 51 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH-HHH---------TTCCEEEEEECCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH-HHh---------cCCEEEEEEeccC
Confidence 4566788999999999886554444 332 3668899988763
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.30 E-value=0.063 Score=51.35 Aligned_cols=21 Identities=19% Similarity=0.380 Sum_probs=18.0
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|+|||..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 367999999999999988654
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.18 E-value=0.024 Score=53.54 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
+.-.++++|.|+|||..++-.+.+... .+.+++|+.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEeecc
Confidence 455789999999999887544433322 356899998884
No 101
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.97 E-value=0.044 Score=52.12 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=27.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
|.=.++++|.|||||..++-.+.+ ... .+.+++++.|.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r-~~~---------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR-AKI---------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH-HHH---------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HHH---------CCCEEEEEEecc
Confidence 445678999999999876654444 322 467899998884
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.046 Score=56.46 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|+|||..+-.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 467899999999999988654
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.56 E-value=0.066 Score=49.53 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHHHH--------hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHH
Q 007492 438 GYKSLNRIQSRIFQTVY--------YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAA 509 (601)
Q Consensus 438 g~~~l~~iQ~~~i~~~l--------~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~ 509 (601)
.|...++.|..++..+. ..++.+++++|+|+|||..+.. +...+... .+..++|+ +..++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~-i~~~~~~~--------~g~~~~~~-~~~~~~~ 80 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA-TLKAIYEK--------KGIRGYFF-DTKDLIF 80 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH-HHHHHHHH--------SCCCCCEE-EHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH-HHHHHHHH--------cCCeEEEE-EHHHHHH
Confidence 34333566777766653 2478999999999999988654 33333211 23344443 4455555
Q ss_pred HHHHHH
Q 007492 510 EVTRTF 515 (601)
Q Consensus 510 Q~~~~~ 515 (601)
.+...+
T Consensus 81 ~~~~~~ 86 (180)
T 3ec2_A 81 RLKHLM 86 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
No 104
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.38 E-value=0.06 Score=52.03 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=33.8
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
..|.-+++++|+|+|||..++-.+..... .+.+++|+.-.. -..++...+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~----------~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLK----------MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHH----------TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh----------cCCeEEEEEccC-CHHHHHHHHH
Confidence 35788999999999999987654444332 245788876432 3455555554
No 105
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.17 E-value=0.16 Score=51.63 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=25.0
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
+.++++++|+|+|||..+-. +.+.+.. .+..++|+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~---------~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKK---------RGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHH---------TTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHH---------CCCEEEEEEH
Confidence 36899999999999988654 3333332 2456677643
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.2 Score=51.48 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=28.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
.+.++++++|+|+|||.++-. +++.+......+ ....+..++|--
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~~~~~~~--~~~~~~~v~INc 88 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELITSSARK--ELPIFDYIHIDA 88 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHHHTTTTT--SSCCEEEEEEET
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHHHhhhc--cCCceEEEEEec
Confidence 367999999999999988655 445554321111 112567777763
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.95 E-value=0.12 Score=53.60 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=17.0
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45799999999999988644
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.14 E-value=2 Score=40.14 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|+|+|||..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999987643
No 109
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.89 E-value=0.15 Score=57.71 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHh---cCC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 441 SLNRIQSRIFQTVYY---TNE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~---~~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
.|+..|..++..+.. .+. ..++.+-||||||+++.-.+ ... +..+|||+|++.+|.|++..|.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~------------~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEV------------NKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH------------CCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHh------------CCCEEEEECCHHHHHHHHHHHH
Confidence 688888888776542 343 46788999999999865433 322 2259999999999999999999
Q ss_pred hhcCCCCcEEEEEe
Q 007492 517 SRLSPLNMIVRELT 530 (601)
Q Consensus 517 ~~l~~~~i~V~~l~ 530 (601)
.++... .|..+.
T Consensus 79 ~~~~~~--~v~~fp 90 (661)
T 2d7d_A 79 EFFPNN--AVEYFV 90 (661)
T ss_dssp HHCTTS--EEEEEC
T ss_pred HHcCCC--cEEEcc
Confidence 987532 444443
No 110
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.79 E-value=0.49 Score=50.70 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=25.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
..++++++|+|+|||..+-. +.+.+... ..+.+++|+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-------~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-------EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-------CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-------CCCCeEEEeeH
Confidence 35899999999999988654 33433321 13456777654
No 111
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.78 E-value=0.23 Score=51.26 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=23.6
Q ss_pred ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc
Q 007492 459 NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA 502 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la 502 (601)
++++++|+|+|||..+-. +...+.. ..+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~--------~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKD--------KTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTT--------SCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhh--------hcCeeEEEEe
Confidence 799999999999988644 3343322 0145677775
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.78 E-value=0.76 Score=42.68 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=16.1
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987644
No 113
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.64 E-value=0.43 Score=48.60 Aligned_cols=20 Identities=45% Similarity=0.717 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||.++-.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 36899999999999988654
No 114
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.46 E-value=0.18 Score=52.89 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++|+++|+|+|||.++-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57999999999999988654
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.21 E-value=0.63 Score=47.70 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=24.2
Q ss_pred cHHHHHHHHHH---HhcCC---ceeEeccCCCchHHHHHHH
Q 007492 443 NRIQSRIFQTV---YYTNE---NILVCAPTGAGKTNIAMIS 477 (601)
Q Consensus 443 ~~iQ~~~i~~~---l~~~~---n~lv~ApTGsGKT~va~l~ 477 (601)
.|+|..++..+ +.+++ .+|+++|.|+|||.++...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 46666665443 32333 4899999999999987653
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.93 E-value=0.46 Score=45.89 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=27.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
|.=.++++|-|||||..++-.+.+... .+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH----------CCCEEEEEEeccC
Confidence 444467888999999886665555433 4678999999874
No 117
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.68 E-value=0.31 Score=52.44 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=28.2
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
..|.-++|.|++|+|||..++-.+.+.... .+.+++|+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---------~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK---------TNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH---------SSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEEEC
Confidence 357889999999999998876655443322 2446788764
No 118
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.50 E-value=0.23 Score=62.42 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHh-----cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHH
Q 007492 450 FQTVYY-----TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEV 511 (601)
Q Consensus 450 i~~~l~-----~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~ 511 (601)
+..++. .+.++++++|+|+|||..+...+..... .+.+++|+..--++....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~----------~G~~v~Fi~~e~~~~~l~ 1471 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFIDAEHALDPIY 1471 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----------TTCCEEEECTTSCCCHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----------cCCcEEEEEcccccCHHH
Confidence 566663 4789999999999999998776554332 467899998776554444
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.34 E-value=0.53 Score=47.61 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=14.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+|+.+|+|+|||.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp EEEECSSTTSSHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHH
Confidence 457778899999988654
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.10 E-value=0.4 Score=45.70 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=27.4
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
+.=.++++|.|||||.-.+-.+-+... .+.+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI----------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH----------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEEccc
Confidence 566788999999999665544443332 35789999887
No 121
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.82 E-value=0.16 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.3
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+.++++.+|+|+|||.++-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 4688999999999999988754
No 122
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.75 E-value=0.3 Score=49.85 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=35.0
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhh
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSR 518 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~ 518 (601)
..|.-++|+|++|+|||..++-.+.+... .+.+++|++-- .-..|+..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~----------~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD----------NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT----------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 35788999999999999877665554332 23578888643 3445555555443
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.72 E-value=0.64 Score=45.48 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=29.5
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
|.=.++++|-|||||..++-.+.+... .+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~----------~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI----------AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT----------TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH----------CCCeEEEEeecCC
Confidence 555577888899999886665555432 4678999988874
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.67 E-value=0.26 Score=51.70 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=29.8
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.+.-++|.+|+|+|||..++-.+.+.. . .+.+++|+..-..+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~---------~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-K---------AGGTCAFIDAEHAL 114 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H---------TTCCEEEEESSCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-H---------CCCeEEEEECCCCh
Confidence 577899999999999988765444432 2 24578888765444
No 125
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.56 E-value=2.2 Score=43.61 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++++||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999988754
No 126
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.54 E-value=0.41 Score=48.25 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 47899999999999988654
No 127
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.49 E-value=0.57 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=18.8
Q ss_pred CceeEeccCCCchHHHHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.++++++|+|+|||..+.. +...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 7899999999999998654 33443
No 128
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.47 E-value=0.17 Score=45.08 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=18.2
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..+.++++++|+|+|||.++-
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHG
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 468899999999999998754
No 129
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.41 E-value=0.42 Score=51.22 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=32.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
.|.-++|+|++|+|||..++-.+.+.... .+.+++|+..- .-..|+..++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~---------~g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK---------EGVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCCEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCeEEEEECC-CCHHHHHHHH
Confidence 57888999999999998776555443322 24568887643 2234555444
No 130
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.22 E-value=0.53 Score=51.41 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+|+++|+|+|||.++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 36899999999999988654
No 131
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.89 E-value=0.16 Score=53.05 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=30.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.+.-++|++|+|+|||..++-.+..... .+.+++|+..-..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~----------~g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH----------TTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEeCCCCc
Confidence 5788999999999999998665544332 24578888765444
No 132
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.96 E-value=0.27 Score=51.09 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=30.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.|.-++|.+|+|+|||..++..+..... .+.+++|+.--..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~----------~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA----------AGGIAAFIDAEHAL 101 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH----------TTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEECCCCc
Confidence 5788999999999999987665544332 35678888754433
No 133
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=88.96 E-value=0.59 Score=52.70 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHHHHhc-CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 441 SLNRIQSRIFQTVYYT-NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~-~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
.+|.-|.+++..++.. ..-.++.|+-|.|||.+.-+.+-. +. .++++.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~------------~~~~vtAP~~~a~~~l~~~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA------------GRAIVTAPAKASTDVLAQFAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS------------SCEEEECSSCCSCHHHHHHHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH------------hCcEEECCCHHHHHHHHHHhhC--
Confidence 6899999999888742 234689999999999666554433 21 1368999999977654432211
Q ss_pred CCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEEeccCcccCCCChHHHHHHHHHH
Q 007492 520 SPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART 595 (601)
Q Consensus 520 ~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llIiDEaH~l~d~rg~~le~iv~r~ 595 (601)
.|-...|..+ .... ...++||||||=.+. -|.++.++.+.
T Consensus 240 ------------------------~i~~~~Pd~~---~~~~------~~~dlliVDEAAaIp---~pll~~ll~~~ 279 (671)
T 2zpa_A 240 ------------------------KFRFIAPDAL---LASD------EQADWLVVDEAAAIP---APLLHQLVSRF 279 (671)
T ss_dssp ------------------------GCCBCCHHHH---HHSC------CCCSEEEEETGGGSC---HHHHHHHHTTS
T ss_pred ------------------------CeEEeCchhh---hhCc------ccCCEEEEEchhcCC---HHHHHHHHhhC
Confidence 0222345432 1111 137899999999987 57777777654
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.52 E-value=0.37 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va 474 (601)
.+++.+..-+...+..|.+++|++|||||||...
T Consensus 244 ~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4556666666666678999999999999999774
No 135
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.58 E-value=1.4 Score=42.60 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=27.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
.|.=.++++|-|||||..++-.+ .+... .+.+++++.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~---------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIY---------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHH---------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHH---------cCCceEEEEeccC
Confidence 35556889999999997655444 33332 3578899988764
No 136
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.31 E-value=0.39 Score=50.12 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAE 510 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q 510 (601)
.|.-++|.+|+|+|||..++-.+. .+.. .+.+++|+..-..+-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~-~~~~---------~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA-EAQK---------MGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH-HHHH---------TTCCEEEEESSCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHh---------cCCeEEEEecccccchH
Confidence 477889999999999987654333 3322 35678999876655443
No 137
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.90 E-value=0.58 Score=49.70 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.9
Q ss_pred cCCceeEeccCCCchHHHH
Q 007492 456 TNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va 474 (601)
...+++|.||||||||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3679999999999999975
No 138
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.18 E-value=0.63 Score=47.29 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=20.0
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+.++++++|+|+|||..+.. +.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57999999999999988654 333443
No 139
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.50 E-value=0.53 Score=45.20 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=34.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|.-++|+|++|+|||..++-.+.+.... .+..++|+.-. .-..++..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~---------~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---------YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---------HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------cCCCceeeccc-CCHHHHHHHHHH
Confidence 57889999999999998876555544333 24467777533 334555555544
No 140
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.19 E-value=2.6 Score=45.63 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=40.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.+....+.+-||||||++..-.+ +. .+..+|||+|+...|.+++..+..++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~------------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ER------------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HH------------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HH------------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678999999999998743322 21 234589999999999999999988764
No 141
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.73 E-value=1.6 Score=44.85 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~ 536 (601)
| -++|.+|+|+|||..++-.+.+.... ..+.+++||..-.++.... +.+ +|+. .
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~--------g~g~~vlyId~E~s~~~~r---a~~----lGvd---------~- 82 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQ--------YPDAVCLFYDSEFGITPAY---LRS----MGVD---------P- 82 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHH--------CTTCEEEEEESSCCCCHHH---HHH----TTCC---------G-
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhc--------CCCceEEEEeccchhhHHH---HHH----hCCC---------H-
Confidence 5 68999999999999877655554322 1257899999877775432 222 2321 0
Q ss_pred hhhcCCccEEEEChhhHHHH----HccCCCCCccCCccEEEeccCcccC
Q 007492 537 RNELEETQMIVTTPEKWDVI----TRKSSDMSLSMLVKLLIIDEVHLLN 581 (601)
Q Consensus 537 ~~~~~~~~IiVtTPekld~l----~r~~~~~~~~~~v~llIiDEaH~l~ 581 (601)
-++++..|..++.+ ......+. ...+++||||=+..|.
T Consensus 83 ------d~llv~~~~~~E~~~l~i~~~l~~i~-~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ------ERVIHTPVQSLEQLRIDMVNQLDAIE-RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GGEEEEECSBHHHHHHHHHHHHHTCC-TTCCEEEEEECSTTCB
T ss_pred ------HHeEEEcCCCHHHHHHHHHHHHHHhh-ccCceEEEEecccccc
Confidence 13555555543222 11110000 1147899999999886
No 142
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.67 E-value=1.2 Score=47.42 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHh-cCCceeEeccCCCchHHHHHHHHHHHH
Q 007492 443 NRIQSRIFQTVYY-TNENILVCAPTGAGKTNIAMISILHEI 482 (601)
Q Consensus 443 ~~iQ~~~i~~~l~-~~~n~lv~ApTGsGKT~va~l~il~~l 482 (601)
.+-+..++..++. .+..++|++|||||||...-. ++..+
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~a-llg~l 191 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA-GLQEL 191 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHhhc
Confidence 3445556655543 356789999999999987432 34443
No 143
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.60 E-value=0.82 Score=47.82 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=20.5
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHE 481 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~ 481 (601)
.+.+++|++|||||||.....-+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999998765544443
No 144
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=84.31 E-value=3.4 Score=41.82 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.7
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+|+++|.|+|||.++..
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999987655
No 145
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.27 E-value=1.5 Score=50.92 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||.++..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 56899999999999988654
No 146
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.11 E-value=2 Score=41.22 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=43.6
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhccc--CCC------CCCCcEEEEEc-cChhHHHHHHHHHHhhcCCCCcEEEE
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRD--GYL------HKDEFKIVYVA-PMKALAAEVTRTFSSRLSPLNMIVRE 528 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~--~~~------~~~~~kvl~la-PtraLa~Q~~~~~~~~l~~~~i~V~~ 528 (601)
..+++.+|.|+|||..+ .++++.+...... ... ...+.+++++= .+.++-..+...++..+.+..+.+-.
T Consensus 59 n~ili~GPPGtGKTt~a-~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~ 137 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG-MSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDR 137 (212)
T ss_dssp SEEEEESCGGGCHHHHH-HHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC-
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHH
Confidence 36999999999999886 3355554321110 000 01234555542 22333333334455555444333311
Q ss_pred EeCCCccchhhcCCccEEEEChhh
Q 007492 529 LTGDMQLSRNELEETQMIVTTPEK 552 (601)
Q Consensus 529 l~Gd~~~~~~~~~~~~IiVtTPek 552 (601)
.+- ...++..+-+||||..-
T Consensus 138 Khr----~~~~~~~~PlIITtN~~ 157 (212)
T 1tue_A 138 KHK----PLIQLKCPPILLTTNIH 157 (212)
T ss_dssp -------CCEEECCCCEEEEESSC
T ss_pred hhc----CccccCCCCEEEecCCC
Confidence 111 11223456789998763
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.72 E-value=0.68 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.7
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+.++++++|+|+|||.++-.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHH
Confidence 4578999999999999987644
No 148
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.47 E-value=1.7 Score=53.93 Aligned_cols=86 Identities=17% Similarity=0.373 Sum_probs=60.5
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLS 536 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~ 536 (601)
|.-+.|.+|.|||||..++-.+...-. .+..++||.+-.+|.....+.+ |+.+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~----------~g~~~~~i~~e~~~~~~~~~~~-------Gv~~---------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFIDAEHALDPIYARKL-------GVDI---------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH----------TTCCEEEECTTSCCCHHHHHHT-------TCCG----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCeEEEEecCCCCCHHHHHHc-------CCCH----------
Confidence 678999999999999998776554322 4789999999999877753332 3222
Q ss_pred hhhcCCccEEEEChhh----H---HHHHccCCCCCccCCccEEEeccCcccCC
Q 007492 537 RNELEETQMIVTTPEK----W---DVITRKSSDMSLSMLVKLLIIDEVHLLND 582 (601)
Q Consensus 537 ~~~~~~~~IiVtTPek----l---d~l~r~~~~~~~~~~v~llIiDEaH~l~d 582 (601)
-+++|+-|.. | +.+.+.. .+++||||.+-.|..
T Consensus 1484 ------~~l~~~~p~~~e~~l~~~~~~~~s~-------~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 ------DNLLCSQPDTGEQALEICDALARSG-------AVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ------GGCEEECCSSHHHHHHHHHHHHHHT-------CCSEEEESCSTTCCC
T ss_pred ------HHeEEeCCCcHHHHHHHHHHHHHcC-------CCCEEEEccHHhCCc
Confidence 1377888853 3 3333332 478999999999875
No 149
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.37 E-value=1.7 Score=43.06 Aligned_cols=20 Identities=55% Similarity=0.757 Sum_probs=17.7
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.++++++|+|+|||.++-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 67999999999999988754
No 150
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=82.30 E-value=5.6 Score=37.05 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=48.8
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
+.++||.++++.-+..+...+... |+.+..++|+++...+. ....+|+|+| +.+.++ .++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT----~~~~~G-ldi~--- 121 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT----DVASKG-LDFP--- 121 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC----HHHHTT-CCCC---
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc----CchhcC-CCcc---
Confidence 458999999999999998888764 67899999998754332 2468999999 334443 3433
Q ss_pred CccEEEe
Q 007492 568 LVKLLII 574 (601)
Q Consensus 568 ~v~llIi 574 (601)
.+++||.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 3666665
No 151
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=82.27 E-value=3.6 Score=37.06 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=49.2
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
+.++|+.++++.-+..+...+... |+.+..++|+++...+. ....+|+|+|. .+.+ +.++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~~-Gld~~--- 102 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD----VAAR-GIDIE--- 102 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG----GGTT-TCCCS---
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC----hhhc-CCchh---
Confidence 468999999999999998888763 77899999998754332 24688999993 2332 33433
Q ss_pred CccEEEec
Q 007492 568 LVKLLIID 575 (601)
Q Consensus 568 ~v~llIiD 575 (601)
.++++|.-
T Consensus 103 ~~~~Vi~~ 110 (163)
T 2hjv_A 103 NISLVINY 110 (163)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 36677653
No 152
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.89 E-value=0.8 Score=41.39 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 46899999999999988643
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.41 E-value=1.4 Score=41.48 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=18.7
Q ss_pred cCCceeEeccCCCchHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~i 478 (601)
.|..+++.+|+|+|||..+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 57889999999999998765433
No 154
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.28 E-value=1.6 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=19.3
Q ss_pred HhcCCceeEeccCCCchHHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l 476 (601)
+..+.++++++|+|+|||..+-.
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHcCCeEEEECCCCCcHHHHHHH
Confidence 34688999999999999988643
No 155
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=81.00 E-value=4.2 Score=38.52 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=41.9
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++|+.+|++.-+..++..+.+. |+.+..++|+++...+. ....+|+|||.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 3568999999999999988888764 67899999998765432 24678999993
No 156
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=80.91 E-value=2.2 Score=51.46 Aligned_cols=63 Identities=19% Similarity=0.073 Sum_probs=46.8
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhccc-C-CCCCCCcEEEEEccChhHHHHHHHHHHhhcC
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRD-G-YLHKDEFKIVYVAPMKALAAEVTRTFSSRLS 520 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~-~-~~~~~~~kvl~laPtraLa~Q~~~~~~~~l~ 520 (601)
.+.+|.|+-|||||.+-..-+++.|..+... + .-.....++|+|+=|++-|.||..++.+++.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 4559999999999999877788877542100 0 0112345899999999999999999888764
No 157
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.75 E-value=1.1 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=20.2
Q ss_pred HHHHhcCCceeEeccCCCchHHHHH
Q 007492 451 QTVYYTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 451 ~~~l~~~~n~lv~ApTGsGKT~va~ 475 (601)
...+..|..++|++|||||||...-
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHH
Confidence 3445679999999999999998643
No 158
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.55 E-value=0.76 Score=42.18 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=17.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56899999999999998765
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.41 E-value=1.7 Score=41.25 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=33.5
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
...+++|..++|.|||.+|+-..++.+.. +.+|+|+-=.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~----------G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH----------GKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT----------TCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC----------CCeEEEEEeeC
Confidence 45799999999999999999988888764 77888886555
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.08 E-value=2.8 Score=42.31 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|+|+|||.++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467889999999999987544
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.92 E-value=0.78 Score=41.48 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 56899999999999988654
No 162
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=79.74 E-value=7.2 Score=34.99 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=41.3
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
+.++|+.++++.-+..+...+.. .|+.+..++|+++...+. ....+|+|||.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56899999999999998888876 367899999998754332 24689999993
No 163
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.73 E-value=1 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.8
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+.++++++|||+|||.++-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 4578999999999999988654
No 164
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.39 E-value=11 Score=40.97 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++||.++++.-|..++..+.+.+. .++.+..++|++....+. ....+|+|||. .+. .+.++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~----~~~-~GiDip-- 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD----VGA-RGMDFP-- 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----GGT-SSCCCT--
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc----hhh-cCCCcc--
Confidence 467999999999999999999987654 367799999998765332 24689999994 233 233443
Q ss_pred CCccEEEecc
Q 007492 567 MLVKLLIIDE 576 (601)
Q Consensus 567 ~~v~llIiDE 576 (601)
.|++||.-.
T Consensus 410 -~v~~VI~~~ 418 (563)
T 3i5x_A 410 -NVHEVLQIG 418 (563)
T ss_dssp -TCCEEEEES
T ss_pred -cCCEEEEEC
Confidence 366666443
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=79.26 E-value=0.82 Score=40.91 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|+|||||.++-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998754
No 166
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.24 E-value=0.88 Score=42.61 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|+|||||.++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 578999999999999998754
No 167
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=79.16 E-value=5 Score=36.48 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=48.9
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++|+.++++.-|..++..+.. .|+.+..++|+++...+. ....+|+|||. .+. .+.++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~----~~~-~Gid~~-- 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN----VCA-RGIDVK-- 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC----SCC-TTTCCT--
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec----chh-cCCCcc--
Confidence 356999999999999998887765 477899999998765332 24688999993 222 233333
Q ss_pred CCccEEEe
Q 007492 567 MLVKLLII 574 (601)
Q Consensus 567 ~~v~llIi 574 (601)
.+.+||.
T Consensus 102 -~~~~Vi~ 108 (175)
T 2rb4_A 102 -QVTIVVN 108 (175)
T ss_dssp -TEEEEEE
T ss_pred -cCCEEEE
Confidence 4677774
No 168
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.06 E-value=0.91 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|.|||||.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999998754
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=78.98 E-value=0.83 Score=45.62 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.++++++|+|+|||.++-.
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999998754
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.98 E-value=1.3 Score=41.48 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=26.3
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccC
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPM 504 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPt 504 (601)
.|.-+++.+|+|+|||..+...+. . .+.+++|+.-.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~----~---------~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL----L---------SGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH----H---------HCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----H---------cCCcEEEEECC
Confidence 477889999999999988765443 1 24578887643
No 171
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.22 E-value=1.3 Score=40.89 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|+-+++++|+|||||..+-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467789999999999987544
No 172
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.10 E-value=0.86 Score=47.10 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=17.0
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..++|++|||||||.++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45789999999999998765
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.84 E-value=1 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=18.2
Q ss_pred HhcCCceeEeccCCCchHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~ 475 (601)
+..|+.+++++|||||||...-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 3467889999999999998743
No 174
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.74 E-value=1.4 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.0
Q ss_pred HHHHhcCCceeEeccCCCchHHH
Q 007492 451 QTVYYTNENILVCAPTGAGKTNI 473 (601)
Q Consensus 451 ~~~l~~~~n~lv~ApTGsGKT~v 473 (601)
...+..|+.+++++|||||||..
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHH
T ss_pred hhhccCCCEEEEECCCCCCHHHH
Confidence 33445799999999999999985
No 175
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.66 E-value=0.98 Score=46.18 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=15.2
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-++|++|||||||..+.-
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 467899999999988755
No 176
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=77.58 E-value=0.94 Score=44.51 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=15.3
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++|++|||||||.++..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999998754
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=77.38 E-value=1.3 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|.-+++++|+|||||.++-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 467789999999999987543
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=77.25 E-value=3.8 Score=43.90 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHhhcCCCCcEEE
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSSRLSPLNMIVR 527 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~~l~~~~i~V~ 527 (601)
+.-+++++|+|+|||.++.--+ ..+.. .+.++++++ |.|.-+.++...+.... |+.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA-~~l~~---------~G~kVllv~~D~~R~aa~eqL~~~~~~~---gvpv~ 159 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA-RYFQK---------RGYKVGVVCSDTWRPGAYHQLRQLLDRY---HIEVF 159 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHT---------TTCCEEEEECCCSSTHHHHHHHHHHGGG---TCEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHH-HHHHH---------CCCeEEEEeCCCcchhHHHHHHHHHHhc---CCcEE
Confidence 3467889999999999864422 22322 356777766 67776666666665543 55554
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.01 E-value=1.1 Score=43.46 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.8
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
...++++++|+|+|||.++-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357899999999999988654
No 180
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.93 E-value=1.2 Score=40.21 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=17.5
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+.+++|.|||||.++-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999988644
No 181
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.84 E-value=1.1 Score=46.26 Aligned_cols=21 Identities=48% Similarity=0.677 Sum_probs=18.1
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999998754
No 182
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.76 E-value=1.1 Score=45.99 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.7
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.-++|++|||||||..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3568899999999988654
No 183
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.49 E-value=14 Score=40.51 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=53.2
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++||.++++.-|..++..+.+.+. .++.+..++|++....+. ....+|+|||. ++.+ +.++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~----~~~~-GiDip-- 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD----VGAR-GMDFP-- 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----GGTS-SCCCT--
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc----hhhc-CCCcc--
Confidence 467999999999999999999987654 367799999998764332 24688999994 2333 34443
Q ss_pred CCccEEEecc
Q 007492 567 MLVKLLIIDE 576 (601)
Q Consensus 567 ~~v~llIiDE 576 (601)
.|++||.-.
T Consensus 359 -~v~~VI~~~ 367 (579)
T 3sqw_A 359 -NVHEVLQIG 367 (579)
T ss_dssp -TCCEEEEES
T ss_pred -cCCEEEEcC
Confidence 366766544
No 184
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.33 E-value=1.1 Score=44.17 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|+|||..+-.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 467899999999999988654
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.29 E-value=1.9 Score=41.07 Aligned_cols=46 Identities=20% Similarity=0.063 Sum_probs=28.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
.|.-+++++|+|+|||..+...+...+.... .| ..+..++|+.-..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~g---~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPID-RG---GGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGG-GT---CCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchh-cC---CCCCeEEEEECCC
Confidence 5788999999999999987664443222100 00 0245788886443
No 186
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.27 E-value=2.3 Score=43.30 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=34.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH-HHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL-AAEVTRTF 515 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL-a~Q~~~~~ 515 (601)
.|.-++|++|+|+|||..++-.+........ .| ..+.+++|+.-...+ ..++...+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~g---g~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KG---GLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GT---CCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cC---CCCCeEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999987665544221100 00 015688998765543 34444443
No 187
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.16 E-value=1.3 Score=40.46 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.1
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|||||.++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999998754
No 188
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=76.14 E-value=1.3 Score=41.71 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.8
Q ss_pred CceeEeccCCCchHHHH
Q 007492 458 ENILVCAPTGAGKTNIA 474 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va 474 (601)
+.++|+||+|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999864
No 189
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.97 E-value=3.2 Score=45.18 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCceeEeccCCCchHHHHHH
Q 007492 448 RIFQTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 448 ~~i~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.-.+ ..+.++|+++|+|+|||..+-.
T Consensus 33 ~l~~al-~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAA-LSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHH-HHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHH-hcCCeeEeecCchHHHHHHHHH
Confidence 333333 4789999999999999987643
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.94 E-value=1.1 Score=44.95 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|+|+|||..+-.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 467899999999999998754
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.91 E-value=1.2 Score=44.41 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|+|+|||..+-.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 67999999999999988754
No 192
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.74 E-value=1 Score=41.44 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.0
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..|..+++++|+|||||..+-+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3577899999999999987543
No 193
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.67 E-value=2.3 Score=42.34 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.5
Q ss_pred hcCCceeEeccCCCchHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~i 478 (601)
..|+-++|.||+|+|||..+...+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 458889999999999998865533
No 194
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=75.43 E-value=5.1 Score=37.04 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=36.1
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEC
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTT 549 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtT 549 (601)
.+.++||.++++.-+..+...+.. .|+.+..++|+++...+. ....+|+|||
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 357899999999999998888876 377899999988754332 2468899999
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.06 E-value=1.5 Score=43.15 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++|+++|+|+|||.++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45899999999999998754
No 196
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.03 E-value=1.7 Score=40.83 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=16.3
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|+-+.+++|+|||||...-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467889999999999987543
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.80 E-value=1.3 Score=43.00 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+++++|+|+|||..+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999988644
No 198
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.78 E-value=14 Score=41.57 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++|+.++|+.-|..+...+.. .|+.+..++|++....+. ....+|+|||- .+ ..+.++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~----~l-~~GlDip-- 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN----LL-REGLDIP-- 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC----CC-STTCCCT--
T ss_pred cCCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc----hh-hCCcccC--
Confidence 357999999999999998888876 478888899987643221 14688999994 22 3334443
Q ss_pred CCccEEEeccCcccC
Q 007492 567 MLVKLLIIDEVHLLN 581 (601)
Q Consensus 567 ~~v~llIiDEaH~l~ 581 (601)
.|+++|+-+++..+
T Consensus 513 -~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 513 -EVSLVAILDADKEG 526 (661)
T ss_dssp -TEEEEEETTTTCCT
T ss_pred -CCCEEEEeCccccc
Confidence 58999999887654
No 199
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.77 E-value=1.5 Score=41.25 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.8
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.-+++++|+|||||.++-.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 577899999999999987644
No 200
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.71 E-value=1.4 Score=40.68 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+++++++.|||||.++-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 367899999999999998754
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=74.61 E-value=2.4 Score=40.53 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=19.7
Q ss_pred hcCCceeEeccCCCchHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~i 478 (601)
..|+-+.+.+|+|||||..+...+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999998765433
No 202
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=74.35 E-value=3.4 Score=49.65 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=35.5
Q ss_pred eEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHhhc
Q 007492 461 LVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSSRL 519 (601)
Q Consensus 461 lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~~l 519 (601)
+|.|+.|||||.+.+--|.+.+..+ ..+.++++|||...-- ++..++.+.+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-------~~~~~il~lVP~q~TF-t~~~rl~~~l 55 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-------PFGKPIIFLVPDQMTF-LMEYELAKTP 55 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-------TTSSCEEEECCGGGHH-HHHHHHTCCS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-------CCCCcEEEEecCcccH-HHHHHHHHhh
Confidence 7899999999999877777666542 2357899999987433 3444444433
No 203
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=73.99 E-value=6.1 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.9
Q ss_pred HhcCCceeEeccCCCchHHHHHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~l~il 479 (601)
+..|.-++|.+|+|+|||..+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998765443
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.99 E-value=1.7 Score=40.42 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.8
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|.-+.+++|+|||||..+-+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577889999999999987644
No 205
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=73.87 E-value=1.6 Score=45.35 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=16.9
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..+..++|++|||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35668999999999999874
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=73.85 E-value=4.7 Score=43.04 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSS 517 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~ 517 (601)
+.-+++++|+|+|||.++..-+ ..+.. .+.++++++ +.|.-+.++...+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA-~~l~~---------~G~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA-YFYKK---------RGYKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH-HHHHH---------TTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---------cCCeEEEEecCccchhHHHHHHHHHH
Confidence 4567889999999998864422 22222 356777666 556555555554444
No 207
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=73.74 E-value=1.4 Score=39.79 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.3
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|.|||||.++-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 578999999999988644
No 208
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.56 E-value=1.7 Score=44.46 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.++|+++|+|+|||.++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35899999999999998654
No 209
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.43 E-value=1.5 Score=45.34 Aligned_cols=20 Identities=50% Similarity=0.740 Sum_probs=17.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++++++|+|+|||.++-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 56899999999999988754
No 210
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=72.97 E-value=7.7 Score=35.25 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=41.5
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
+.++|+.++++.-+..++..+... |+.+..++|+++...+. ....+|+|||.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 468999999999999988888764 77899999998754332 24689999993
No 211
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.93 E-value=1.5 Score=44.96 Aligned_cols=19 Identities=47% Similarity=0.751 Sum_probs=16.2
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..++|++|||||||.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3688999999999998755
No 212
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=72.91 E-value=2.1 Score=39.74 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=17.8
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..|.-+.+++|+|||||..+-+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 3577888999999999987543
No 213
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=72.88 E-value=1.5 Score=39.26 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|.|||||.++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998754
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.75 E-value=3 Score=44.56 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=28.9
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP 503 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP 503 (601)
..|.-++|+|++|+|||..++-.+.+... .+.+++|++-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~----------~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD----------NDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH----------TTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH----------cCCEEEEEEC
Confidence 35788999999999999987765555432 2457888863
No 215
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.60 E-value=1.6 Score=44.35 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++|+++|+|+|||.++-.
T Consensus 51 ~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46799999999999988754
No 216
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.53 E-value=2.1 Score=39.46 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.0
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+..+++++|.|||||.++-.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3467899999999999988643
No 217
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.36 E-value=1.6 Score=45.13 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=15.6
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++|++|||||||.++..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999998754
No 218
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=72.22 E-value=4.5 Score=44.14 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
.+.+++|.++||||||.+.-..++..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999886544444443
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.15 E-value=1.8 Score=41.32 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=16.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.-+++++|||+|||..++-
T Consensus 34 g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 56789999999999877654
No 220
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=72.10 E-value=1.8 Score=39.56 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.8
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|.|||||.++-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999988644
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=71.80 E-value=1.2 Score=43.57 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+++++|+|+|||..+-.
T Consensus 44 ~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 56799999999999998754
No 222
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=71.73 E-value=1.7 Score=45.32 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=17.7
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..+..++|++|||||||...-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 457889999999999998743
No 223
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=71.73 E-value=1.8 Score=40.41 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+.+++|.|||||.++-+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 477899999999999988644
No 224
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.37 E-value=1.7 Score=44.11 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.7
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
...++|+++|+|+|||.++-.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHH
T ss_pred CCceEEEECCCCccHHHHHHH
Confidence 356899999999999988654
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=71.35 E-value=2.4 Score=38.88 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.2
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+..+++++|.|||||.++-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3567899999999999998644
No 226
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.19 E-value=1.6 Score=39.51 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|.|||||.++-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 56789999999999988644
No 227
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=71.16 E-value=3.9 Score=40.66 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=19.9
Q ss_pred HHHHHHhcCC--ceeEeccCCCchHHHHHH
Q 007492 449 IFQTVYYTNE--NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 449 ~i~~~l~~~~--n~lv~ApTGsGKT~va~l 476 (601)
.+..++..+. ++++++|+|+|||.++..
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 3333443443 799999999999988654
No 228
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.74 E-value=3.2 Score=41.99 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.3
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|+|+|||..+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5699999999999988644
No 229
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.60 E-value=2.6 Score=38.89 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=14.8
Q ss_pred CceeEeccCCCchHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~ 475 (601)
+-+.+++|+|||||.+.-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457889999999998753
No 230
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.47 E-value=2.6 Score=40.05 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=17.5
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.++-+++++|+|+|||...-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 577889999999999987543
No 231
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.29 E-value=1.7 Score=39.77 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.7
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|+-+.+++|+|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467789999999999988763
No 232
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=70.28 E-value=1.9 Score=38.63 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.3
Q ss_pred ceeEeccCCCchHHHHH
Q 007492 459 NILVCAPTGAGKTNIAM 475 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~ 475 (601)
-.+|++|+|||||++.-
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45789999999999843
No 233
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=70.28 E-value=2.6 Score=39.48 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=26.9
Q ss_pred eeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 460 ILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
++|.+++|||||..+.--. . . +..++|++.....-.++..++.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~--------~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----G--------D-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----C--------S-CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----h--------c-CCCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999998776421 1 1 34689999877665555554443
No 234
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=70.14 E-value=4 Score=42.08 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=33.5
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFS 516 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~ 516 (601)
..|.-++|.|++|+|||..++-.+.+... .+..++|++.- .-..|+..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN----------DDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeCC-CCHHHHHHHHH
Confidence 35778899999999999887665544332 35678887642 23445555543
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.07 E-value=1.9 Score=43.24 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.8
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+|+++|+|+|||..+-.
T Consensus 36 p~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999998654
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.04 E-value=3.9 Score=37.47 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.5
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..++++++.|||||.++-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999998754
No 237
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.01 E-value=21 Score=40.10 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++|+.++++.-|..+...+.. .|+.+..++|++....+. ....+|+|||- .+ ..+.++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~----~l-~~GlDip-- 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN----LL-REGLDIP-- 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC----CC-CTTCCCT--
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC----hh-hcCccCC--
Confidence 357999999999999998888776 477888899987643221 14688999993 22 2333443
Q ss_pred CCccEEEeccCccc
Q 007492 567 MLVKLLIIDEVHLL 580 (601)
Q Consensus 567 ~~v~llIiDEaH~l 580 (601)
.|+++|+=+++..
T Consensus 507 -~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 -EVSLVAILDADKE 519 (664)
T ss_dssp -TEEEEEETTTTSC
T ss_pred -CCCEEEEeCCccc
Confidence 4888888777654
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.92 E-value=1.8 Score=43.11 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=16.6
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|+|+|||.++-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4799999999999988754
No 239
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.86 E-value=2.4 Score=43.15 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+|+++|+|+|||..+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 36899999999999988754
No 240
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=69.80 E-value=13 Score=37.41 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=40.9
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTT 549 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtT 549 (601)
+.++|+.++++.-+..++..+.. .|+.+..++|+++...+. ....+|+|||
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 56899999999999988887765 478899999998765432 2468899999
No 241
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.38 E-value=3.7 Score=41.81 Aligned_cols=19 Identities=42% Similarity=0.835 Sum_probs=16.8
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+++++|+|+|||..+-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6899999999999988655
No 242
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=69.36 E-value=1.6 Score=39.91 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|.|||||.++-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999988654
No 243
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.15 E-value=5.1 Score=38.08 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHhcCCceeEeccCCCchHHHHH
Q 007492 443 NRIQSRIFQTVYYTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 443 ~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~ 475 (601)
+.-|..++..+ ..|+-+.+.+|+|||||..+-
T Consensus 9 ~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHH
Confidence 34456677765 478999999999999988753
No 244
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.07 E-value=1.9 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHH
Q 007492 441 SLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 441 ~l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
..+..+...+. .+.+..+.+++|.|||||.++-+
T Consensus 11 ~~~~~~~~~~~--~~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 11 SVEKVDRQRLL--DQKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCCHHHHHHHH--TSCCEEEEEECSTTSSHHHHHHH
T ss_pred ccCHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHH
Confidence 34455544332 13577889999999999988644
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.99 E-value=2.9 Score=39.80 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=17.4
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+++|+|||||...-
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468889999999999998753
No 246
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.96 E-value=2.7 Score=43.36 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++|+++|+|+|||.++-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46899999999999998754
No 247
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=68.80 E-value=2 Score=45.45 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=15.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-++|++|||||||.++..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 468899999999988654
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.70 E-value=4 Score=41.91 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=30.6
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKA 506 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtra 506 (601)
.|.-++|++|+|+|||..++-.+........ ....+.+++|+.-...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~----~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGA----GGYPGGKIIFIDTENT 167 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBT----TTBCCCEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccc----cCCCCCeEEEEECCCC
Confidence 4678899999999999987665544222100 0013568999986654
No 249
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.47 E-value=2.6 Score=45.06 Aligned_cols=20 Identities=35% Similarity=0.742 Sum_probs=17.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.++|+++|+|+|||..+..
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 46899999999999998754
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=68.46 E-value=2.2 Score=39.80 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.7
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+++++|.|||||.++-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34789999999999998754
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=68.23 E-value=1.7 Score=39.97 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=15.7
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.-+++++|+|||||..+-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4578999999999988644
No 252
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.23 E-value=3.9 Score=40.69 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCcHHHHHH-HHHHHhcC---C-ceeEeccCCCchHHHHHH
Q 007492 441 SLNRIQSRI-FQTVYYTN---E-NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 441 ~l~~iQ~~~-i~~~l~~~---~-n~lv~ApTGsGKT~va~l 476 (601)
..++++-.. +..+++.. . .+++++|.|+|||..+..
T Consensus 83 g~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 83 GYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp TCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 345777554 44455322 2 589999999999999874
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=68.18 E-value=2.4 Score=40.74 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.9
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..|+-+.|++|+|||||...-+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4688899999999999987543
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=68.11 E-value=2.3 Score=41.19 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=15.8
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+++++|+|+|||..+-.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999987643
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.97 E-value=2 Score=39.32 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.7
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..++++++.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999998644
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=67.60 E-value=7.8 Score=39.19 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=16.5
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.-+++++|+|+|||..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHH
Confidence 355678999999999987543
No 257
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=67.57 E-value=2.9 Score=43.16 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.0
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
...++|+++|+|+|||.++-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 367899999999999998754
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.24 E-value=5.7 Score=40.07 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=35.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhh---cccCCCCCC---CcEEEEEccChhH-HHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQH---FRDGYLHKD---EFKIVYVAPMKAL-AAEVTRTFS 516 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~---~~~~~~~~~---~~kvl~laPtraL-a~Q~~~~~~ 516 (601)
.|.-++|++|+|+|||..++-.+.+..... +........ ..+++|+.-...+ ..++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 577899999999999998766554422110 000000111 1689999866544 445554443
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=67.07 E-value=2.3 Score=42.61 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=16.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..++++||.|||||.++-.
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999988654
No 260
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=67.04 E-value=2.8 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.3
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..++++++.|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4689999999999998754
No 261
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.03 E-value=5.6 Score=40.34 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHhcCC--ceeEeccCCCchHHHHHH
Q 007492 449 IFQTVYYTNE--NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 449 ~i~~~l~~~~--n~lv~ApTGsGKT~va~l 476 (601)
.+..++..|+ ++++++|+|+|||..+..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 3444444454 389999999999988754
No 262
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=66.56 E-value=2.3 Score=44.19 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.5
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.-.++++|||||||++...
T Consensus 26 gl~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4467899999999999543
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=66.55 E-value=2.7 Score=38.09 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.9
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|.|||||.++-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 689999999999998754
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=66.35 E-value=5.5 Score=38.70 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.8
Q ss_pred ceeEeccCCCchHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~ 480 (601)
++++.++.|+|||..++--...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999996654443
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.19 E-value=2.5 Score=39.70 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998754
No 266
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=66.02 E-value=14 Score=37.87 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=49.7
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++|+.++++.-+..++..+.+ .|+.+..++|+++...+. ....+|+|||. .+.+ +.++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~----~~~~-Gidip-- 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA----VAAR-GLDIS-- 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH----HHHT-TSCCC--
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC----hhhc-CCCcc--
Confidence 467899999999999998888876 367899999998754332 24688999994 3444 33433
Q ss_pred CCccEEEe
Q 007492 567 MLVKLLII 574 (601)
Q Consensus 567 ~~v~llIi 574 (601)
.+++||.
T Consensus 344 -~v~~Vi~ 350 (417)
T 2i4i_A 344 -NVKHVIN 350 (417)
T ss_dssp -CEEEEEE
T ss_pred -cCCEEEE
Confidence 3666664
No 267
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=65.86 E-value=2.8 Score=37.71 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=17.0
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.+++++++.|||||.++-+
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6899999999999998755
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=65.85 E-value=11 Score=39.70 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHH--hcCCceeEeccCCCchHHHHHH
Q 007492 442 LNRIQSRIFQTVY--YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 442 l~~iQ~~~i~~~l--~~~~n~lv~ApTGsGKT~va~l 476 (601)
+-..-.+++...+ ..|..+.|.+|+|+|||..+..
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 4444556666654 2488999999999999998754
No 269
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=65.76 E-value=7.3 Score=42.99 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQ 484 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~ 484 (601)
...++||.+.||||||.+.-..++..+..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999866555554443
No 270
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=65.61 E-value=3.5 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.0
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-.+|++|+|||||.++-.
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 568899999999998544
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.55 E-value=2.8 Score=39.94 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.0
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
....+++++|+|||||.++-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 356799999999999998643
No 272
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.45 E-value=2.7 Score=44.88 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.4
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|+|+|||..+-.
T Consensus 215 prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHH
Confidence 56899999999999998654
No 273
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=65.40 E-value=2.7 Score=38.32 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=16.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++++|||||.++-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 44688999999999998743
No 274
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=65.33 E-value=3.3 Score=42.97 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-.+|++|||||||.++-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 467899999999998744
No 275
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.25 E-value=2.7 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999998754
No 276
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=65.04 E-value=3.9 Score=38.71 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.0
Q ss_pred ceeEeccCCCchHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~ 480 (601)
-.+++++.|||||..++.-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999987554433
No 277
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=64.56 E-value=3.2 Score=37.27 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.1
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..++++++.|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999998754
No 278
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=64.32 E-value=3.1 Score=39.37 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+++++|.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999998754
No 279
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.27 E-value=3.8 Score=53.26 Aligned_cols=26 Identities=38% Similarity=0.797 Sum_probs=21.8
Q ss_pred HHHHHHhcCCceeEeccCCCchHHHH
Q 007492 449 IFQTVYYTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 449 ~i~~~l~~~~n~lv~ApTGsGKT~va 474 (601)
.+..++..++++|+++|||+|||..+
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 44556667899999999999999876
No 280
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=64.24 E-value=4.7 Score=39.90 Aligned_cols=18 Identities=39% Similarity=0.724 Sum_probs=15.9
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 699999999999988654
No 281
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=64.07 E-value=3.2 Score=39.20 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|.|||||.++-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356789999999999988654
No 282
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=64.00 E-value=4.1 Score=38.21 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=17.6
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+.+|+|||||..+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468889999999999998753
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=63.88 E-value=2.9 Score=38.03 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.3
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|.|||||.++-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999988654
No 284
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=63.81 E-value=4.8 Score=41.85 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHhcCCc--eeEeccCCCchHHHHH
Q 007492 453 VYYTNEN--ILVCAPTGAGKTNIAM 475 (601)
Q Consensus 453 ~l~~~~n--~lv~ApTGsGKT~va~ 475 (601)
++..|.| ++..++||||||.+.+
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hccCCceeEEEeeCCCCCCCCEEEe
Confidence 3434665 5889999999998853
No 285
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=63.77 E-value=13 Score=37.90 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=49.5
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
+.++|+.++++.-|..++..+.+. ++.+..++|++....+. ....+|+|||. .+. .+.++.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~-~Gidip--- 333 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN----VCA-RGIDVE--- 333 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG----GGT-SSCCCT---
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC----ccc-cCCCcc---
Confidence 468999999999999999888764 67788999998765332 24688999994 233 334443
Q ss_pred CccEEEe
Q 007492 568 LVKLLII 574 (601)
Q Consensus 568 ~v~llIi 574 (601)
.+++||.
T Consensus 334 ~~~~Vi~ 340 (412)
T 3fht_A 334 QVSVVIN 340 (412)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 4777774
No 286
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.72 E-value=3.2 Score=43.91 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=17.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|+|+|||..+-.
T Consensus 182 prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHH
Confidence 57899999999999998654
No 287
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=63.65 E-value=13 Score=44.72 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=56.7
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.+++|++|++.-+..++..+.+.+. +..|..++|+++...+. ..+.+|+|||. ++. .+.++.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~----v~e-~GiDip-- 881 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT----IIE-TGIDIP-- 881 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS----TTG-GGSCCT--
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC----cce-eeeccc--
Confidence 367899999999999999999988764 56788999998754332 24689999994 333 344554
Q ss_pred CCccEEEeccCccc
Q 007492 567 MLVKLLIIDEVHLL 580 (601)
Q Consensus 567 ~~v~llIiDEaH~l 580 (601)
.+++||+..++..
T Consensus 882 -~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 882 -TANTIIIERADHF 894 (1151)
T ss_dssp -TEEEEEETTTTSS
T ss_pred -CCcEEEEeCCCCC
Confidence 5888998766543
No 288
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=63.48 E-value=3.4 Score=38.42 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.8
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|.|||||.++-.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999998654
No 289
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=63.38 E-value=3.1 Score=37.91 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=15.8
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..++++++.|||||.++-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578999999999998644
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=63.36 E-value=3.4 Score=38.16 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.6
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|.|||||.++-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 466789999999999998654
No 291
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=62.93 E-value=3 Score=37.95 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.3
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|..+.++++.|||||.++-+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466789999999999988643
No 292
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=62.93 E-value=5.6 Score=44.17 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHhcCCceeEeccCCCchHHHHHH
Q 007492 450 FQTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 450 i~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
+..++..+..+++.+|+|+|||..+-.
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHH
Confidence 344455789999999999999988654
No 293
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=62.92 E-value=28 Score=35.87 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=39.2
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeC--------CCccchhh-------cCCccEEEEC
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTG--------DMQLSRNE-------LEETQMIVTT 549 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~G--------d~~~~~~~-------~~~~~IiVtT 549 (601)
.+.++||.++++.-+..+...+... |+.+..++| +++...+. ....+|+|||
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC
Confidence 4679999999999999988888765 788999999 55544322 1468899999
No 294
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.45 E-value=3 Score=39.22 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=16.1
Q ss_pred cCCceeEeccCCCchHHHH
Q 007492 456 TNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va 474 (601)
.+.-+.|.+|+|||||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999775
No 295
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.36 E-value=7.2 Score=41.10 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=29.9
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccCh
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMK 505 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtr 505 (601)
..|.-++|++|+|+|||..+...++..+..... | ..+.+++|+.-..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~-G---g~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDI-G---GGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGG-T---CCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCccc-C---CCCCcEEEEeCCC
Confidence 358899999999999998876444433221100 0 1246788887543
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.35 E-value=7.5 Score=35.82 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
-+.+++++|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999874
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=61.99 E-value=4.4 Score=39.86 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=15.8
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+++++|+|+|||..+-.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHH
Confidence 4599999999999987643
No 298
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.99 E-value=3.4 Score=44.12 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|+|+|||..+-.
T Consensus 215 prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 57899999999999998754
No 299
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.87 E-value=3.6 Score=36.72 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.4
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++++++.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999988654
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.63 E-value=3.1 Score=39.71 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=13.4
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|.-+.+++|+|||||.++-+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp CCCEEEEECSCC----CHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 477788999999999988543
No 301
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.60 E-value=3.5 Score=43.94 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|+|+|||..+-.
T Consensus 206 prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999998754
No 302
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=61.56 E-value=4.2 Score=43.32 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.3
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+|+++|+|+|||..+-.
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999988754
No 303
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=61.47 E-value=3.7 Score=38.55 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=18.4
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..|+-+.+++|+|||||..+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3578899999999999987654
No 304
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.41 E-value=3.5 Score=44.67 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
...++|+++|+|+|||.++-.
T Consensus 237 ~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHH
Confidence 356899999999999998754
No 305
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=61.38 E-value=3.8 Score=39.53 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+.+++|.|||||..+-+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 57899999999999987643
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=61.31 E-value=3.6 Score=38.42 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.6
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.-+.|.+|+|||||.++-+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 355678999999999988643
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.26 E-value=4.2 Score=38.30 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+.+.+|+|||||.++-+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999988744
No 308
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=61.19 E-value=3.5 Score=44.30 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=18.2
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
...|+|+++|+|+|||.++-.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 467999999999999998755
No 309
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=61.09 E-value=3.4 Score=42.24 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.4
Q ss_pred ceeEeccCCCchHHHHH
Q 007492 459 NILVCAPTGAGKTNIAM 475 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~ 475 (601)
-.+|++|+|||||++..
T Consensus 25 ~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34789999999999964
No 310
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=61.07 E-value=16 Score=36.85 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCcc
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLS 566 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~ 566 (601)
.+.++|+.++++.-|..++..+... ++.+..++|+++...+. ....+|+|||. +...+.++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gidip-- 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARGIDIP-- 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSSCCCT--
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcCCCcc--
Confidence 3568999999999999988888764 67789999998754332 24678999994 222334443
Q ss_pred CCccEEEeccCc
Q 007492 567 MLVKLLIIDEVH 578 (601)
Q Consensus 567 ~~v~llIiDEaH 578 (601)
.+++||.-...
T Consensus 311 -~~~~Vi~~~~p 321 (395)
T 3pey_A 311 -TVSMVVNYDLP 321 (395)
T ss_dssp -TEEEEEESSCC
T ss_pred -cCCEEEEcCCC
Confidence 47777765444
No 311
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=60.88 E-value=12 Score=42.23 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=50.0
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhhcCCccEEEEChhhHHHHHccCCCCCccCCccEEE
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLI 573 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~~~~~~IiVtTPekld~l~r~~~~~~~~~~v~llI 573 (601)
.+.++||.+|++.-+.+++..+.+ .|+.+..++|++........+.+|+|||. ++.++ .++. |++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er~~~~~~VLVATd----VaerG-IDId----V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVIPTIGDVVVVATD----ALMTG-YTGD----FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGSCSSSCEEEEECT----THHHH-CCCC----BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHhCCCcEEEECC----hHHcc-CCCC----CcEEE
Confidence 357999999999999998888875 47889999999876654445679999993 34443 3332 66666
No 312
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=60.82 E-value=3.7 Score=38.07 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.0
Q ss_pred CceeEeccCCCchHHHH
Q 007492 458 ENILVCAPTGAGKTNIA 474 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va 474 (601)
..+++++|.|||||.++
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999887
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=60.74 E-value=4.3 Score=43.39 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=16.6
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|+|+|||.++-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4799999999999998755
No 314
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=60.68 E-value=4.6 Score=43.68 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=33.4
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..|.-++|.|++|+|||..++-.+.+.... .+.+++|+.-- .-..|+..++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~---------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA---------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTT---------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHh---------cCCcEEEEecc-CCHHHHHHHH
Confidence 357788999999999999876655543321 25578887642 2244555554
No 315
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=60.60 E-value=3.9 Score=43.77 Aligned_cols=20 Identities=55% Similarity=0.757 Sum_probs=17.2
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..++|+++|+|+|||.++-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46899999999999998643
No 316
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.27 E-value=4.8 Score=40.83 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.4
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|+|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 67899999999999988654
No 317
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=60.08 E-value=8.3 Score=38.92 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.3
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
.++-+.+++|+|||||...-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35678899999999988743
No 318
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=59.94 E-value=19 Score=38.97 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=42.2
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++||.++++.-+.+++..+.+. |+.+..++|+++...+. ....+|+|||.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 3568999999999999999888764 77899999998764332 24689999995
No 319
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=59.87 E-value=4.1 Score=37.89 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=17.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..++++++.|||||.++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467889999999999998754
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=59.82 E-value=3.9 Score=38.14 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=17.0
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.-+.|++|+|||||.++-+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356788999999999987654
No 321
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=59.82 E-value=3.7 Score=38.07 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.8
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..++++++.|||||.++-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45688999999999998754
No 322
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=59.68 E-value=41 Score=37.07 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=42.6
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++||.++++.-|.+++..+.+ .|+.+..++|+++...+. ....+|+|+|.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQN----LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHH----CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 457899999999999999988876 378899999998765332 24689999994
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=59.62 E-value=4.2 Score=37.82 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=17.6
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..++++++.|||||.++-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 356789999999999998754
No 324
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.60 E-value=12 Score=30.91 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCCChhHHHHHHHHhhCCCchHHHHHH
Q 007492 227 LSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDL 286 (601)
Q Consensus 227 ~~wL~r~~~~~~~~~~~~~~~~~l~~~i~~~L~s~~~~~e~e~~L~~llg~~~~~~i~~l 286 (601)
.-|+..++..++.. +.+.+.+-|+..|....+.++++.+|-..|+-+.-.|+..|
T Consensus 19 kpWI~kkv~e~LG~-----eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eL 73 (92)
T 1x4q_A 19 KPWIEKTVKRVLGF-----SEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKL 73 (92)
T ss_dssp HHHHHHHHHHHHSS-----CCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56999999988863 33568888999998877889999999999998877788877
No 325
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=59.58 E-value=12 Score=38.07 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.0
Q ss_pred cCCceeEeccCCCchHHHH
Q 007492 456 TNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va 474 (601)
.+.-+.+++|+|||||...
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677889999999999764
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=59.30 E-value=3.9 Score=38.51 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.4
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999988654
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=59.29 E-value=4 Score=37.91 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.2
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+.|++|.|||||.++-+
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999998644
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.21 E-value=4 Score=39.98 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...++++|+.|||||.++-.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 44689999999999998654
No 329
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=59.19 E-value=7.6 Score=39.16 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
.|+-+.+++|+|||||...-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46778899999999988753
No 330
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.11 E-value=4 Score=40.49 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=15.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+++.+|+|+|||..+-.
T Consensus 45 ~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp SEEEEESSTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4599999999999987643
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=58.98 E-value=4.3 Score=37.32 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.2
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++++++.|||||..+-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478999999999988654
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=58.50 E-value=4.3 Score=36.97 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=15.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.++++++.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999988654
No 333
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=58.44 E-value=5.7 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.8
Q ss_pred CceeEeccCCCchHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~ 475 (601)
.-.+|++|+|||||.+.-
T Consensus 24 ~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 345789999999999854
No 334
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=58.36 E-value=24 Score=36.94 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=47.6
Q ss_pred EEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccCCc
Q 007492 497 KIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSMLV 569 (601)
Q Consensus 497 kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~~v 569 (601)
++||.++++.-|..++..+.+. |+.+..++|++....+. ....+|+|||. ++.+ +.++. .|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~----v~~r-GlDi~---~v 369 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS----VASR-GLDIK---NI 369 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG----GGTS-SCCCT---TC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch----hhhC-CCCcc---cC
Confidence 4999999999999988888763 67899999998765332 24689999994 3333 34443 46
Q ss_pred cEEEe
Q 007492 570 KLLII 574 (601)
Q Consensus 570 ~llIi 574 (601)
++||.
T Consensus 370 ~~VI~ 374 (434)
T 2db3_A 370 KHVIN 374 (434)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 67664
No 335
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.34 E-value=5.3 Score=39.19 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+.+++|.|||||.++-+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 89999999999999998654
No 336
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.28 E-value=9.1 Score=37.81 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.8
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999988654
No 337
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=58.11 E-value=4 Score=38.35 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHhcCCceeEeccCCCchHHHHHH
Q 007492 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~l 476 (601)
.++.+..... ...+..++++++.|||||.++-.
T Consensus 12 ~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTELR--NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHHHH--TSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhccc--CCCCCEEEEECCCCCCHHHHHHH
Confidence 3455555533 24577889999999999988644
No 338
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=57.95 E-value=4.7 Score=38.55 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.+++++++.|||||.++-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56899999999999988654
No 339
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.60 E-value=4.1 Score=43.80 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|+|+|||..+-.
T Consensus 243 prGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHH
Confidence 57899999999999988654
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.42 E-value=4.6 Score=37.58 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=14.9
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+.+.+|.|||||.++-+
T Consensus 4 ~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999988644
No 341
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=57.41 E-value=5 Score=41.73 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=13.4
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..+.||||||.+.
T Consensus 107 tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 107 TIMCYGQTGAGKTYTM 122 (359)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEeCCCCCCccEEe
Confidence 4577899999999885
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=57.40 E-value=3.4 Score=37.44 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=12.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..++++++.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999988754
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.17 E-value=3.2 Score=40.47 Aligned_cols=20 Identities=45% Similarity=0.551 Sum_probs=16.8
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|.|||||.++-.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999988654
No 344
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=57.15 E-value=5.2 Score=37.77 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.9
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..++++++.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999988654
No 345
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.89 E-value=5.9 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=21.1
Q ss_pred HHHHHHhcCCceeEeccCCCchHHH
Q 007492 449 IFQTVYYTNENILVCAPTGAGKTNI 473 (601)
Q Consensus 449 ~i~~~l~~~~n~lv~ApTGsGKT~v 473 (601)
.+..++..+.++|+++|||+|||..
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHHH
Confidence 4566677789999999999999965
No 346
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=56.79 E-value=8.4 Score=47.95 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=32.4
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKAL 507 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraL 507 (601)
.+.++++++|+|+|||..++-.+...+. .+.+++||.-....
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~----------~G~~vlYI~te~~~ 74 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFIDAEHAL 74 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH----------TTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh----------CCCceEEEEecCcc
Confidence 5789999999999999998776665543 25689999765544
No 347
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=56.73 E-value=5.9 Score=40.88 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 97 tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 97 TALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEecCCCCCCCeEE
Confidence 4577899999999984
No 348
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=56.71 E-value=21 Score=36.55 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=48.7
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
..++|+.++++.-+..++..+.+. |+.+..++|++....+. ....+|+|||. .+. .+.++.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~-~Gidi~--- 343 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD----VWA-RGLDVP--- 343 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG----GGS-SSCCCT---
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC----hhh-CcCCcc---
Confidence 458999999999999988888763 67789999998754322 24688999994 222 334443
Q ss_pred CccEEEe
Q 007492 568 LVKLLII 574 (601)
Q Consensus 568 ~v~llIi 574 (601)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (410)
T 2j0s_A 344 QVSLIIN 350 (410)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 4777774
No 349
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.64 E-value=6.1 Score=40.05 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.5
Q ss_pred hcCCceeEeccCCCchHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l 476 (601)
..|+.+.|++|+|||||..+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 4588999999999999987544
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=56.56 E-value=9.2 Score=38.91 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.6
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.++-+++++|+|+|||.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788899999999987543
No 351
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=56.51 E-value=6.4 Score=36.32 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=14.0
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.+.+.+|+|||||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999875
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.32 E-value=5.8 Score=38.61 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.8
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+.|.+|+|||||.++-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467889999999999988744
No 353
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.13 E-value=5.6 Score=40.75 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.6
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 80 tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTM 95 (325)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCCceEe
Confidence 4677899999999885
No 354
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=55.96 E-value=8.9 Score=38.27 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCceeEeccCCCchHHHHH
Q 007492 444 RIQSRIFQTVYYTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 444 ~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~va~ 475 (601)
.-+...+..++..+..++|+||.|+|||....
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHH
Confidence 33444444555456889999999999998743
No 355
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.66 E-value=5.1 Score=36.63 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.7
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
+++++|.|||||.++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999988754
No 356
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.63 E-value=5.6 Score=40.29 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=16.0
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|+|+|||..+..
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp CCEEEECSTTSSHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999988644
No 357
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=55.31 E-value=9 Score=48.43 Aligned_cols=46 Identities=11% Similarity=0.207 Sum_probs=34.7
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVT 512 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~ 512 (601)
.+.++++++|+|+|||..+...+...+. .+.+++|+. ..++.++++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k----------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT----------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH----------cCCeEEEEE-ccccHHHHH
Confidence 5889999999999999998876666543 367888885 445555555
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=55.30 E-value=5.7 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.8
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+.|++++|||||.++-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999998754
No 359
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=55.20 E-value=5.1 Score=43.25 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.0
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+++++|+|+|||..+-.
T Consensus 49 p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999998744
No 360
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=55.11 E-value=4.9 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=18.1
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
...|+|+++|+|+|||.++-.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 366999999999999998754
No 361
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=54.95 E-value=5.1 Score=43.96 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+++++|+|+|||..+-.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 67899999999999988654
No 362
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.80 E-value=7.7 Score=36.23 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=15.6
Q ss_pred CCceeEeccCCCchHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~ 475 (601)
|+-+.+.+|+|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4568899999999998753
No 363
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=54.79 E-value=5.7 Score=38.45 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.4
Q ss_pred hcCCceeEeccCCCchHHH
Q 007492 455 YTNENILVCAPTGAGKTNI 473 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~v 473 (601)
..|+-+.+.+|+|||||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3588899999999999965
No 364
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=54.59 E-value=5.7 Score=41.39 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=13.3
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 92 tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 92 CIFAYGQTGAGKSYTM 107 (366)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEeCCCCCCCceEe
Confidence 4567899999999874
No 365
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.56 E-value=6.1 Score=41.00 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 83 tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTM 98 (355)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCcceEe
Confidence 4567899999999885
No 366
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=54.42 E-value=6.7 Score=41.19 Aligned_cols=19 Identities=47% Similarity=0.777 Sum_probs=14.7
Q ss_pred cCCc--eeEeccCCCchHHHH
Q 007492 456 TNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n--~lv~ApTGsGKT~va 474 (601)
.|.| ++..++||||||.+.
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHH
T ss_pred cCceeeEeeecCCCCCCCeEe
Confidence 3544 566899999999885
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=54.18 E-value=5.4 Score=38.63 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.3
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+++++|.|||||.++-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355789999999999988754
No 368
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.13 E-value=8.9 Score=41.70 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.0
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
.|+-++|++|+|||||..+...++.-+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999887664444443
No 369
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=54.10 E-value=6.8 Score=40.89 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.3
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..+.||||||.+.
T Consensus 103 tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 103 TVFAYGQTGTGKTHTM 118 (373)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEeecCCCCCcceec
Confidence 4567899999999874
No 370
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=53.84 E-value=10 Score=39.34 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
.++-+.+++|+|||||...-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 46778899999999998753
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=53.57 E-value=19 Score=38.27 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTF 515 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~ 515 (601)
...+++++++|+|||.++.--+. .+.. ..+.+++++. |.+..+.++...+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~-~l~~--------~~G~kVllvd~D~~r~~a~~ql~~~ 151 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGK-FLRE--------KHKKKVLVVSADVYRPAAIKQLETL 151 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH-HHHH--------TSCCCEEEEECCCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH--------hcCCeEEEEecCCCCccHHHHHHhh
Confidence 34678889999999988654332 2222 1155666665 5565555443333
No 372
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=53.55 E-value=5.9 Score=41.37 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.3
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 104 tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 104 TIFAYGQTGTGKTYTM 119 (372)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred eEEeecCCCCCCCEeE
Confidence 4567899999999884
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=53.24 E-value=5.7 Score=37.75 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=15.2
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999988644
No 374
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=53.19 E-value=16 Score=36.60 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=28.8
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHHh
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFSS 517 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~~ 517 (601)
+.-+++++|+|+|||.++..-.. .+.. .+.+++++. |.+..+.++...+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~-~~~~---------~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY-FYKK---------KGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH-HHHH---------TTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---------CCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 45677889999999887544222 1222 244566554 445555544444433
No 375
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.17 E-value=6.9 Score=40.72 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 87 tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 87 TIFAYGQTSSGKTHTM 102 (365)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEeecCCCCCCceEE
Confidence 4567899999999984
No 376
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.12 E-value=7.1 Score=40.47 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 95 tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 95 CIFAYGQTGSGKSYTM 110 (354)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEeeCCCCCCCceEE
Confidence 4577899999999985
No 377
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=53.10 E-value=6 Score=41.07 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=14.6
Q ss_pred cCCc--eeEeccCCCchHHHH
Q 007492 456 TNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n--~lv~ApTGsGKT~va 474 (601)
.|.| ++..++||||||.+.
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCCceEE
Confidence 3544 566899999999875
No 378
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=52.97 E-value=8.7 Score=40.85 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=15.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+++++|+|+|||..+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5789999999999987544
No 379
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=52.92 E-value=7.1 Score=40.29 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.4
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 86 tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTM 101 (344)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEecccCCCceEee
Confidence 4577899999999884
No 380
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.79 E-value=7.4 Score=41.46 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.4
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|+|+|||..+-.
T Consensus 216 prGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHH
Confidence 57899999999999998654
No 381
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=52.66 E-value=5.3 Score=44.39 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.4
Q ss_pred ceeEeccCCCchHHHHH
Q 007492 459 NILVCAPTGAGKTNIAM 475 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~ 475 (601)
++|+++|+|+|||..+-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999998754
No 382
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=52.43 E-value=7.4 Score=41.59 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..+.||||||.+.
T Consensus 139 tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 139 CIFAYGQTGSGKSYTM 154 (443)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEeCCCCCCCCEEe
Confidence 4567899999999986
No 383
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=52.10 E-value=6.1 Score=36.83 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+.-+.|++|+|||||.++-.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678899999999987643
No 384
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=52.03 E-value=6.8 Score=40.65 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=13.3
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 106 tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 106 TIMCYGQTGAGKTYTM 121 (358)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCCceEe
Confidence 4566899999999885
No 385
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=51.98 E-value=99 Score=25.44 Aligned_cols=81 Identities=7% Similarity=0.024 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccccccccchHHHHHHHHHHhC-CCCCHHHHHHHH
Q 007492 58 ASTEVRQVYKQFIGAVVEFIDGEMPSEEFGEIALSAYHLFGRPAEEEDNSVNRNIVEKKSKMQTLIG-HAVSDASVYKVA 136 (601)
Q Consensus 58 kt~etr~~ye~iL~~v~~~lggD~p~dvI~sAAd~vl~~Lk~~~~~~~~~~~~~~~~kk~eIe~llG-~~i~~~~f~~L~ 136 (601)
|..++.+.+++.+....+++.+..-+--||.||..+.+.|.++.... ..+...-...|+++-. |.+|...-..+-
T Consensus 8 ~~~e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~----~vRAAtAIs~LDeISnDPNmP~htRT~IW 83 (94)
T 2qzg_A 8 KKLSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQEL----IVRSATAIQYLDDISEDPNMPIHTRTQIW 83 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCH----HHHHHHHHHHHHHHTTCTTCCHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHhhcCCCCChHHHHHHH
Confidence 34456677777777778888766667789999999999999886543 3344445556666665 566766555555
Q ss_pred HHHHHh
Q 007492 137 SLAQRL 142 (601)
Q Consensus 137 ~L~k~I 142 (601)
+++.++
T Consensus 84 ~ivS~L 89 (94)
T 2qzg_A 84 GIVSEL 89 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 386
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=51.97 E-value=30 Score=32.39 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHhcCC-ceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHH
Q 007492 442 LNRIQSRIFQTVYYTNE-NILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTR 513 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~~-n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~ 513 (601)
-++-|+.++..++.+.. -.+|.++-|++||...+..++..-.. .|.+|.+|+|+..-.....+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~---------~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE---------QGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH---------TTCCEEEECSTTHHHHHHSC
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh---------cCeEEEEEcCchHHHHHHHh
Confidence 34779999999886654 44778999999999865554443322 68899999999887665443
No 387
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=51.78 E-value=18 Score=36.02 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=41.8
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++|+.++++.-+..++..+.+. |+.+..++|+++...+. ....+|+|||.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4678999999999999988888764 67899999988754332 24678999994
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=51.49 E-value=6.5 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.7
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+.++++.|||||.++-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678999999999988644
No 389
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=51.47 E-value=6.3 Score=39.04 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.4
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++++|.|||||.++-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998744
No 390
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=51.38 E-value=6.3 Score=40.81 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 92 tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 92 TIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEeecCCCCCCCEEe
Confidence 4567899999999885
No 391
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.09 E-value=5.9 Score=45.19 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=16.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|||+|||.++-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 599999999999998754
No 392
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.81 E-value=6 Score=45.63 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.0
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|+|||.++-.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 477899999999999987644
No 393
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=50.64 E-value=6.1 Score=38.12 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.-+-|.+|.|||||.++-+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456678899999999988643
No 394
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=50.57 E-value=6.9 Score=36.63 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.9
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+.++++.|||||.++-.
T Consensus 13 ~iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678899999999998754
No 395
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=50.36 E-value=7.5 Score=38.97 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=14.7
Q ss_pred CceeEeccCCCchHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~ 475 (601)
.-+.|++|+|||||..+-
T Consensus 32 ~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356789999999998864
No 396
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=50.05 E-value=6.7 Score=44.61 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.1
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+.++++++|+|+|||.++..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH
Confidence 367999999999999998654
No 397
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.01 E-value=5.2 Score=36.84 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.6
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-+.|++|+|||||....+
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999987644
No 398
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=49.67 E-value=11 Score=39.71 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=14.7
Q ss_pred cCCc--eeEeccCCCchHHHH
Q 007492 456 TNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n--~lv~ApTGsGKT~va 474 (601)
.|.| ++..+.||||||.+.
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHH
T ss_pred cCCceeEEeecCCCCCCCeEe
Confidence 3554 566899999999884
No 399
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=49.51 E-value=6.5 Score=40.73 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=13.5
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 108 tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 108 TVLAYGATGAGKTHTM 123 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCCceeee
Confidence 4577899999999985
No 400
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=49.44 E-value=7.2 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
..+.|++|.|||||.++-.
T Consensus 23 ~iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578899999999998754
No 401
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=49.34 E-value=23 Score=37.46 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEc--cChhHHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVA--PMKALAAEVTRTFS 516 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~la--PtraLa~Q~~~~~~ 516 (601)
+.-+++++|+|+|||.++..-.. .+.. .+.+++++. +.+..+.++...+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~-~l~~---------~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKG---------KGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH-HHHT---------TTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---------cCCeEEEeeccccCchhHHHHHHhc
Confidence 45677889999999987544222 2222 345666555 55555544444443
No 402
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.22 E-value=9.4 Score=40.24 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHHhcCCc--eeEeccCCCchHHHH
Q 007492 449 IFQTVYYTNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 449 ~i~~~l~~~~n--~lv~ApTGsGKT~va 474 (601)
++..++ .|.| ++..++||||||.+.
T Consensus 132 lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 344455 4554 566899999999986
No 403
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.20 E-value=16 Score=47.53 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.8
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
..+.+++.+|||||||.++-
T Consensus 922 ~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 922 TQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HCSEEEEECSTTSSHHHHHH
T ss_pred hcceEEEECCCCCCHHHHHH
Confidence 57889999999999999864
No 404
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=49.01 E-value=24 Score=35.72 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=41.4
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++|+.++++.-+..++..+.+. |+.+..++|+++...+. ....+|+|||.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 4569999999999999988888764 67889999987754321 24678999993
No 405
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=48.83 E-value=77 Score=36.14 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=50.7
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhc-------CCCCcEEEEEeCCCccchhh------------cCCccEEEEChhhHH
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRL-------SPLNMIVRELTGDMQLSRNE------------LEETQMIVTTPEKWD 554 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l-------~~~~i~V~~l~Gd~~~~~~~------------~~~~~IiVtTPekld 554 (601)
.+.++||.+|++.-+..++..+.+.+ ...++.|..++|+++...+. .....|||||.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 36799999999999999998887632 23578899999998754322 12578999994
Q ss_pred HHHccCCCCCccCCccEEE
Q 007492 555 VITRKSSDMSLSMLVKLLI 573 (601)
Q Consensus 555 ~l~r~~~~~~~~~~v~llI 573 (601)
++.+ +.++. .|++||
T Consensus 378 iae~-GidIp---~v~~VI 392 (773)
T 2xau_A 378 IAET-SLTID---GIVYVV 392 (773)
T ss_dssp HHHH-TCCCT---TEEEEE
T ss_pred HHHh-CcCcC---CeEEEE
Confidence 3333 34444 466666
No 406
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=48.59 E-value=6.8 Score=44.58 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=16.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
++++++|||+|||.++-.
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 799999999999998754
No 407
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=48.48 E-value=11 Score=37.78 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.1
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
.+.-+.|.+|+|||||..+-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45567889999999998764
No 408
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=48.43 E-value=7.8 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+.|.+|.|||||.++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999998744
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.31 E-value=9.2 Score=36.97 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999764
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=48.27 E-value=13 Score=37.51 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.4
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
-++|.+|.|||||...
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3678999999999764
No 411
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.21 E-value=8.7 Score=36.41 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.0
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+++.+|+||||+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999887654
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=48.05 E-value=14 Score=40.19 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.6
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
.|.-+.+++|+|||||...-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHH
Confidence 46778899999999998753
No 413
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=47.82 E-value=18 Score=38.01 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=39.2
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccch---hhcCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR---NELEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~---~~~~~~~IiVtTP 550 (601)
+.+++|++|++.-|..++..+.+. ++++..++|+..... -.....+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 457999999999999999888775 678999999743211 1124688999994
No 414
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=47.73 E-value=9.9 Score=39.61 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=17.0
Q ss_pred HHHHHhcCCc--eeEeccCCCchHHHH
Q 007492 450 FQTVYYTNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 450 i~~~l~~~~n--~lv~ApTGsGKT~va 474 (601)
+..++ .|.| ++..++||||||.+.
T Consensus 72 v~~~l-~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAV-DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhh-cCCceEEEEECCCCCCCeEee
Confidence 44445 4554 566899999999885
No 415
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.73 E-value=6.3 Score=39.88 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.1
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-.++++|+|||||++.-.
T Consensus 26 ~~~i~G~NGsGKS~ll~a 43 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDA 43 (322)
T ss_dssp EEEEECCTTTCSTHHHHH
T ss_pred cEEEECCCCCcHHHHHHH
Confidence 568899999999998543
No 416
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.66 E-value=8.1 Score=38.43 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999764
No 417
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=47.45 E-value=4.5 Score=37.67 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.4
Q ss_pred eeEeccCCCchHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l 476 (601)
+++++|.|||||..+-.
T Consensus 3 I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 67899999999987644
No 418
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=47.43 E-value=18 Score=33.18 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.9
Q ss_pred CceeEeccCCCchHHHH
Q 007492 458 ENILVCAPTGAGKTNIA 474 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va 474 (601)
.-+.+++|+|||||...
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 35788999999998764
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=47.30 E-value=7.8 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.5
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
.+.|+++.|||||.++-.
T Consensus 77 iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999988744
No 420
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=52.73 E-value=4.1 Score=36.97 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++|+.++++.-+..+...+.. .|+.+..++|+++...+. ....+|+|||.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 356899999999999887777654 477888999987654332 13578999993
No 421
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=46.89 E-value=10 Score=39.19 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.6
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
.++..++||||||.+.
T Consensus 80 tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTM 95 (349)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred ceeeecCCCCCCCeEE
Confidence 4567899999999986
No 422
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=46.85 E-value=26 Score=35.60 Aligned_cols=53 Identities=4% Similarity=0.011 Sum_probs=41.3
Q ss_pred CCcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEECh
Q 007492 494 DEFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTP 550 (601)
Q Consensus 494 ~~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTP 550 (601)
.+.++|+.++++.-+..++..+... |+.+..++|+++...+. ....+|+|||.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 3569999999999999988888764 67788999988754332 24678999993
No 423
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=46.85 E-value=8.2 Score=41.90 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=16.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
...+++++|+|+|||..+-.
T Consensus 64 p~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34599999999999988644
No 424
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=46.64 E-value=21 Score=37.67 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=38.1
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTP 550 (601)
+.++++++|++.-|.+++..+.+. ++.|..++|+...... .....+|+|||.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 458999999999999999888764 6789999994332111 124689999994
No 425
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.62 E-value=12 Score=38.33 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.7
Q ss_pred CCceeE--eccCCCchHHHHHH
Q 007492 457 NENILV--CAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv--~ApTGsGKT~va~l 476 (601)
+..++| ++|.|+|||..+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 457889 99999999988654
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=46.24 E-value=10 Score=36.42 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999764
No 427
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=46.23 E-value=11 Score=38.63 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHHHHhcCCc--eeEeccCCCchHHHH
Q 007492 449 IFQTVYYTNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 449 ~i~~~l~~~~n--~lv~ApTGsGKT~va 474 (601)
++..++ .|.| ++..++||||||.+.
T Consensus 72 lv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI-DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCCEEEEEeECCCCCCCcEEE
Confidence 344445 4544 567899999999885
No 428
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=46.17 E-value=25 Score=29.87 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=31.4
Q ss_pred CcEEEEEccChhHHHH-HHHHHHhhcCCCCcEEEE-EeCCCccchhhcCCccEEEEChhh
Q 007492 495 EFKIVYVAPMKALAAE-VTRTFSSRLSPLNMIVRE-LTGDMQLSRNELEETQMIVTTPEK 552 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q-~~~~~~~~l~~~~i~V~~-l~Gd~~~~~~~~~~~~IiVtTPek 552 (601)
..+++++|++=-=... +..++++.++..|+.+.. -.+-..+. ....++++||+||.-
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~-~~~~~~DlIist~~l 79 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE-TYMDGVHLICTTARV 79 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT-TSTTSCSEEEESSCC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh-hccCCCCEEEECCcc
Confidence 4578888886443333 244455555545554322 22322232 234578999999863
No 429
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=46.12 E-value=7.6 Score=39.32 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=17.4
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.|++|+|||||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 35889999999999999874
No 430
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.11 E-value=8.9 Score=36.70 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=16.7
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788899999999999753
No 431
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.10 E-value=17 Score=39.36 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=31.5
Q ss_pred hcCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTF 515 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~ 515 (601)
..|.-++|.+|+|+|||..+...+- .+.. .+.+++|+++-.. ..++...+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g-~~~~---------~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVE-NACA---------NKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHH-HHHT---------TTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH-HHHh---------CCCCEEEEEEeCC-HHHHHHHH
Confidence 4688899999999999987654332 2221 2446788876543 23444443
No 432
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=46.09 E-value=10 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.7
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+.+|+|||||...-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 368889999999999997643
No 433
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.83 E-value=11 Score=35.95 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999764
No 434
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.82 E-value=9.9 Score=40.23 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHhcCC--ceeEeccCCCchHHHH
Q 007492 449 IFQTVYYTNE--NILVCAPTGAGKTNIA 474 (601)
Q Consensus 449 ~i~~~l~~~~--n~lv~ApTGsGKT~va 474 (601)
++..++ .|. .++..++||||||.+.
T Consensus 130 lv~~~l-~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL-DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHH-CCCceEEEEecCCCCCCeeEe
Confidence 445555 454 4567899999999985
No 435
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=45.76 E-value=19 Score=34.50 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=13.0
Q ss_pred ceeEecc-CCCchHHHHHH
Q 007492 459 NILVCAP-TGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~Ap-TGsGKT~va~l 476 (601)
.++|.+. ||+|||.+.+.
T Consensus 6 ~i~Itgt~t~vGKT~vt~~ 24 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTK 24 (228)
T ss_dssp EEEEEESSSSSCHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHH
Confidence 3555555 89999999654
No 436
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=45.70 E-value=15 Score=38.85 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.0
Q ss_pred CCceeEeccCCCchHHHH
Q 007492 457 NENILVCAPTGAGKTNIA 474 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va 474 (601)
+..+.+.+|+|+|||...
T Consensus 69 ~~~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFI 86 (413)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 338899999999999763
No 437
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=45.67 E-value=9.3 Score=37.40 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 45888999999999999764
No 438
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=45.63 E-value=10 Score=36.85 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.6
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+.+|+|||||...-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358889999999999997643
No 439
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=45.57 E-value=11 Score=38.61 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=19.2
Q ss_pred cCCceeEeccCCCchHHHHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMISIL 479 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il 479 (601)
.+..+++.+|+|+|||..++-.+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456679999999999988766544
No 440
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=45.51 E-value=7.5 Score=45.02 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=16.5
Q ss_pred CceeEeccCCCchHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l 476 (601)
.++++++|||+|||.++-.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~ 607 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKT 607 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4799999999999998754
No 441
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.47 E-value=11 Score=34.06 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.5
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|.|||||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999764
No 442
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=45.29 E-value=17 Score=36.29 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
++-+.+++|+|+|||..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45677889999999877543
No 443
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=45.04 E-value=8.3 Score=39.06 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=16.3
Q ss_pred cCCceeEeccCCCchHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~ 475 (601)
.|.-+.|.+|+|||||..+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHH
Confidence 45677889999999998763
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=44.62 E-value=10 Score=36.76 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=16.9
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
....+.+.+|+|||||.++-.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355789999999999998754
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=44.52 E-value=11 Score=37.19 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35888999999999999764
No 446
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=44.28 E-value=31 Score=29.85 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCCChhHHHHHHHHhhCCCchHHHHHH
Q 007492 227 LSWLRDACDRIVRQSISQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDL 286 (601)
Q Consensus 227 ~~wL~r~~~~~~~~~~~~~~~~~l~~~i~~~L~s~~~~~e~e~~L~~llg~~~~~~i~~l 286 (601)
.-|..+++..++.. ..+.+.+-|++.|....+...++.+|-..|+-+.-.||..|
T Consensus 48 kPWI~kKI~E~LG~-----eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV~kL 102 (119)
T 3v53_A 48 RPWINKKIIEYIGE-----EEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKM 102 (119)
T ss_dssp HHHHHHHHHHHTC--------CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----chHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45888888877753 33668899999998877889999999999999999999887
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=44.05 E-value=12 Score=35.72 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.5
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.+..+.++++.|||||.++-+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 366789999999999998744
No 448
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=44.01 E-value=10 Score=36.81 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788899999999999764
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=44.00 E-value=11 Score=36.10 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.3
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
..+-+++.+|+||||+..+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678899999999887654
No 450
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=43.80 E-value=13 Score=36.60 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.6
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+.+|+|||||...-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358889999999999998743
No 451
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=43.72 E-value=16 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=13.7
Q ss_pred ceeEeccCCCchHHHHH
Q 007492 459 NILVCAPTGAGKTNIAM 475 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~ 475 (601)
.++..+.||||||.+..
T Consensus 137 tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 137 TCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp EEEEESCTTSSHHHHHC
T ss_pred EEEEecCCCCCCCeEec
Confidence 45678999999998853
No 452
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.62 E-value=11 Score=37.14 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=16.9
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788899999999999764
No 453
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.33 E-value=13 Score=36.11 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.6
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+.+|+|||||...-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358888999999999998753
No 454
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.33 E-value=12 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35888899999999999764
No 455
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=43.01 E-value=14 Score=38.62 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.6
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.++.+++++|+|+|||..+-.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 477899999999999987543
No 456
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=42.92 E-value=12 Score=34.94 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=16.6
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
+..+.++++.|||||.++-.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~ 22 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKR 22 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45688999999999998743
No 457
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=42.91 E-value=12 Score=34.88 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.1
Q ss_pred CCceeEeccCCCchHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~i 478 (601)
|.-++++++.|+|||..++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 6679999999999998766533
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=42.58 E-value=10 Score=39.97 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.4
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
..-+++++|.|||||.++-.
T Consensus 258 ~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45678899999999988644
No 459
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=42.45 E-value=10 Score=38.58 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.0
Q ss_pred ceeEeccCCCchHHHHH
Q 007492 459 NILVCAPTGAGKTNIAM 475 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~ 475 (601)
-+.|.+|+|||||..+-
T Consensus 94 iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36779999999998863
No 460
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=42.37 E-value=7.6 Score=35.27 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHHhcCCceeEeccCCCchHHH
Q 007492 442 LNRIQSRIFQTVYYTNENILVCAPTGAGKTNI 473 (601)
Q Consensus 442 l~~iQ~~~i~~~l~~~~n~lv~ApTGsGKT~v 473 (601)
..+.|+...+......-++++++++|+|||..
T Consensus 7 ~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 7 HHHHSSGLVPRGSKEEMELTLVGLQYSGKTTF 38 (188)
T ss_dssp ------------CCEEEEEEEECSTTSSHHHH
T ss_pred cccccccccccCCCCccEEEEECCCCCCHHHH
Confidence 44455555555544456899999999999965
No 461
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.95 E-value=13 Score=36.55 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35888899999999999764
No 462
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=41.70 E-value=6.3 Score=39.42 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.8
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-+.|++|.|||||.++-.
T Consensus 7 iIgItG~sGSGKSTva~~ 24 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHT 24 (290)
T ss_dssp EEEEESCC---CCTHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999988643
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.67 E-value=13 Score=36.37 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35888999999999999764
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.65 E-value=13 Score=36.67 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.|.+|+|||||...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999764
No 465
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=41.63 E-value=1.2e+02 Score=31.87 Aligned_cols=88 Identities=8% Similarity=0.065 Sum_probs=53.9
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchhh-------cCCccEEEEChhhHHHHHccCCCCCccC
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRNE-------LEETQMIVTTPEKWDVITRKSSDMSLSM 567 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~~-------~~~~~IiVtTPekld~l~r~~~~~~~~~ 567 (601)
+.+.++++....-+.++...+.+ .+.++..++|++....+. ....+|+|||+..+ . .+.++.
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~---~-~GiDip--- 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF---S-TGISVK--- 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH---H-HSCCCC---
T ss_pred CCCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh---h-cccccc---
Confidence 34444555556666666666554 345799999988754322 24678999997654 2 233444
Q ss_pred CccEEEeccCcccCCCChHHHHHHHHHHHh
Q 007492 568 LVKLLIIDEVHLLNDDRGPVIEALVARTLR 597 (601)
Q Consensus 568 ~v~llIiDEaH~l~d~rg~~le~iv~r~~r 597 (601)
.+++||+.....= -..+...+-|+-|
T Consensus 416 ~v~~vi~~~~~~s----~~~~~Q~~GR~gR 441 (510)
T 2oca_A 416 NLHHVVLAHGVKS----KIIVLQTIGRVLR 441 (510)
T ss_dssp SEEEEEESSCCCS----CCHHHHHHHHHHT
T ss_pred cCcEEEEeCCCCC----HHHHHHHHhcccc
Confidence 5888988776621 1345556666655
No 466
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=41.61 E-value=15 Score=38.74 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.3
Q ss_pred CCceeEeccCCCchHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~ 475 (601)
++-.+|++|+|||||+..-
T Consensus 26 ~~~~~i~G~nG~GKstll~ 44 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMD 44 (430)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5677899999999999854
No 467
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.53 E-value=13 Score=36.24 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35788899999999999764
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=41.48 E-value=10 Score=36.04 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.7
Q ss_pred cCCceeEeccCCCchHHHH
Q 007492 456 TNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va 474 (601)
.|.-+.+.+|.|||||..+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4667888999999999864
No 469
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=40.75 E-value=12 Score=38.57 Aligned_cols=19 Identities=37% Similarity=0.449 Sum_probs=14.9
Q ss_pred cCCc--eeEeccCCCchHHHH
Q 007492 456 TNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n--~lv~ApTGsGKT~va 474 (601)
.|.| ++..++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 82 DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GTCCEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEEECCCCCCCcEec
Confidence 3544 567899999999885
No 470
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.58 E-value=14 Score=36.18 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.9
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788899999999999764
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=40.52 E-value=14 Score=36.77 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.1
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35888999999999999764
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=40.17 E-value=11 Score=37.13 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=13.7
Q ss_pred ceeEeccCCCchHHHH
Q 007492 459 NILVCAPTGAGKTNIA 474 (601)
Q Consensus 459 n~lv~ApTGsGKT~va 474 (601)
++.+++|+|||||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999998763
No 473
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=40.15 E-value=14 Score=36.28 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=17.0
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+.+|+|||||...
T Consensus 48 ~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHH
Confidence 35888999999999999764
No 474
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=39.33 E-value=13 Score=38.32 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=17.0
Q ss_pred HHHHHhcCCc--eeEeccCCCchHHHH
Q 007492 450 FQTVYYTNEN--ILVCAPTGAGKTNIA 474 (601)
Q Consensus 450 i~~~l~~~~n--~lv~ApTGsGKT~va 474 (601)
+..++ .|.| ++..++||||||.+.
T Consensus 78 v~~~l-~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 78 VQSSL-DGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHGGG-TTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHH-CCcceeEEEeCCCCCCCceEe
Confidence 33344 4554 566899999999986
No 475
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=39.27 E-value=12 Score=35.89 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.3
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|.-+++.+|.|||||..+-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 466789999999999987544
No 476
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=38.92 E-value=16 Score=37.70 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.2
Q ss_pred ceeEeccCCCchHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l 476 (601)
-.++++|+|+|||++.-.
T Consensus 28 ~~~i~G~nG~GKttll~a 45 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEA 45 (359)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCChhHHHHH
Confidence 668899999999998643
No 477
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=38.41 E-value=25 Score=38.59 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=18.2
Q ss_pred CCceeEeccCCCchHHHHHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l~il~ 480 (601)
.+-+++++..|.|||.++......
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~ 31 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIR 31 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHH
Confidence 345677899999999998665444
No 478
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=38.18 E-value=12 Score=34.30 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.0
Q ss_pred cCCceeEeccCCCchHHHH
Q 007492 456 TNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va 474 (601)
.+..+.+.+++|+|||...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999653
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=37.96 E-value=16 Score=37.40 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=19.6
Q ss_pred hcCCceeEeccCCCchHHHHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAMISI 478 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~l~i 478 (601)
..|.-+.|++|+|||||..+...+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357888999999999998876544
No 480
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=37.79 E-value=29 Score=32.88 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.2
Q ss_pred cCCceeEeccCCCchHHHHHH
Q 007492 456 TNENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l 476 (601)
.|.-+++.+|.|||||..+-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH
Confidence 366788899999999988654
No 481
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=37.49 E-value=16 Score=36.49 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=17.5
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
..|+-+.+.+|+|||||...-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 358889999999999998743
No 482
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=37.29 E-value=14 Score=42.48 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=17.1
Q ss_pred CCceeEeccCCCchHHHHHH
Q 007492 457 NENILVCAPTGAGKTNIAMI 476 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~va~l 476 (601)
.+.+|+++|.|+|||..+-.
T Consensus 238 p~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999998743
No 483
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=37.01 E-value=15 Score=31.69 Aligned_cols=15 Identities=13% Similarity=0.534 Sum_probs=13.4
Q ss_pred ceeEeccCCCchHHH
Q 007492 459 NILVCAPTGAGKTNI 473 (601)
Q Consensus 459 n~lv~ApTGsGKT~v 473 (601)
++++.+++|+|||..
T Consensus 3 ki~v~G~~~~GKSsl 17 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999965
No 484
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=36.91 E-value=38 Score=35.74 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=39.2
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh---hcCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN---ELEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~---~~~~~~IiVtTP 550 (601)
+.++|+.+|++.-|.+++..+.+. |+.+..++|+...... .....+|+|||.
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC
Confidence 347999999999999988888653 7788899998763211 124688999994
No 485
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=36.91 E-value=27 Score=37.90 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=28.5
Q ss_pred CceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEcc--ChhHHHHHHHHH
Q 007492 458 ENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAP--MKALAAEVTRTF 515 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laP--traLa~Q~~~~~ 515 (601)
..+++++++|+|||.++.--+ ..+.. .+.+++++.. .+..+.++...+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA-~~l~~---------~G~kVllVd~D~~r~aa~~qL~~~ 151 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA-YYYQR---------KGWKTCLICADTFRAGAFDQLKQN 151 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHHH---------TTCCEEEEEECCSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHh---------CCCeEEEEeccccchhHHHHHHHH
Confidence 478899999999998854422 22322 2456666663 455554443333
No 486
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=36.87 E-value=36 Score=35.84 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHH--hcCCceeEeccCCCchHHHHHHHHHHHHh
Q 007492 442 LNRIQSRIFQTVY--YTNENILVCAPTGAGKTNIAMISILHEIG 483 (601)
Q Consensus 442 l~~iQ~~~i~~~l--~~~~n~lv~ApTGsGKT~va~l~il~~l~ 483 (601)
+...-.+++..++ -.|..++|.||.|+|||..+. .|.+.+.
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~-~Ia~~i~ 200 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILK-EIANGIA 200 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHH-HHHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHHH-HHHHHHh
Confidence 3344456676654 248899999999999999873 3444443
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=36.71 E-value=15 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=13.6
Q ss_pred ceeEeccCCCchHHH
Q 007492 459 NILVCAPTGAGKTNI 473 (601)
Q Consensus 459 n~lv~ApTGsGKT~v 473 (601)
++++.+++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999976
No 488
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=36.56 E-value=17 Score=35.69 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.3
Q ss_pred HhcCCceeEeccCCCchHHHHH
Q 007492 454 YYTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 454 l~~~~n~lv~ApTGsGKT~va~ 475 (601)
+. |+-+.+.+|+|||||...-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHHH
Confidence 35 7788999999999998753
No 489
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=36.10 E-value=26 Score=34.50 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=29.9
Q ss_pred cCCceeEeccCCCchHHHHHHHHHHHHhhhcccCCCCCCCcEEEEEccChhHHHHHHHHHHh
Q 007492 456 TNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTRTFSS 517 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~va~l~il~~l~~~~~~~~~~~~~~kvl~laPtraLa~Q~~~~~~~ 517 (601)
.|..+||.+.+|+||| ++.+-.+..-.. .+-+++|++-. +-..++.+++..
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~---------~Ge~~~~~~~~-e~~~~l~~~~~~ 70 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK---------SDNLVGMFSIS-YPLQLIIRILSR 70 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH---------TTCEEEEEECS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH---------CCCcEEEEEEe-CCHHHHHHHHHH
Confidence 4678888878888888 443333333222 36688887743 333444544443
No 490
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=36.07 E-value=30 Score=34.99 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=16.0
Q ss_pred ceeEeccCCCchHHHHHHHHHH
Q 007492 459 NILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 459 n~lv~ApTGsGKT~va~l~il~ 480 (601)
-+++++..|.|||.++......
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~ 42 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQ 42 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHH
Confidence 3456788999999987664443
No 491
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=36.03 E-value=25 Score=29.57 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=32.4
Q ss_pred CcEEEEEccChhHHHHHHH-HHHhhcCCCCcE-EEE-EeCCCccchhhcCCccEEEEChhh
Q 007492 495 EFKIVYVAPMKALAAEVTR-TFSSRLSPLNMI-VRE-LTGDMQLSRNELEETQMIVTTPEK 552 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~-~~~~~l~~~~i~-V~~-l~Gd~~~~~~~~~~~~IiVtTPek 552 (601)
..+++++|++=-=...+.. ++++.++..|+. +.. -.+-..+. ....++++||+||.-
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~-~~~~~~DlIi~t~~l 77 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAK-GLASNYDIVVASNHL 77 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHH-HHGGGCSEEEEETTT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHh-hccCCCcEEEECCch
Confidence 3568888887655555554 566666555654 322 22211221 223568999999974
No 492
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=35.92 E-value=23 Score=36.73 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.1
Q ss_pred hcCCceeEeccCCCchHHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIAM 475 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va~ 475 (601)
.++.++++++++|+|||.+|-
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr 178 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVAR 178 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHHH
Confidence 467899999999999998764
No 493
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=35.79 E-value=16 Score=40.29 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.3
Q ss_pred hcCCceeEeccCCCchHHHH
Q 007492 455 YTNENILVCAPTGAGKTNIA 474 (601)
Q Consensus 455 ~~~~n~lv~ApTGsGKT~va 474 (601)
..|+-+.+++|+|||||...
T Consensus 365 ~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 35889999999999999764
No 494
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=35.76 E-value=31 Score=34.69 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=15.7
Q ss_pred eeEeccCCCchHHHHHHHHHH
Q 007492 460 ILVCAPTGAGKTNIAMISILH 480 (601)
Q Consensus 460 ~lv~ApTGsGKT~va~l~il~ 480 (601)
+++++..|.|||.++....+.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~ 37 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALW 37 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEeCCCCchHHHHHHHHHHH
Confidence 456788999999997664443
No 495
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=35.54 E-value=17 Score=31.63 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.4
Q ss_pred CceeEeccCCCchHHHH
Q 007492 458 ENILVCAPTGAGKTNIA 474 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~va 474 (601)
-++++++++|+|||...
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 36899999999999753
No 496
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=35.52 E-value=51 Score=34.86 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=38.9
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccchh-h--cCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSRN-E--LEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~~-~--~~~~~IiVtTP 550 (601)
+.++||.+|++.-|..++..+.+. |+.+..++|+...... . ....+|+|||-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 458999999999999998888764 7789999996432211 1 23578999994
No 497
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=35.23 E-value=40 Score=37.90 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=38.8
Q ss_pred CcEEEEEccChhHHHHHHHHHHhhcCCCCcEEEEEeCCCccch---hhcCCccEEEECh
Q 007492 495 EFKIVYVAPMKALAAEVTRTFSSRLSPLNMIVRELTGDMQLSR---NELEETQMIVTTP 550 (601)
Q Consensus 495 ~~kvl~laPtraLa~Q~~~~~~~~l~~~~i~V~~l~Gd~~~~~---~~~~~~~IiVtTP 550 (601)
+.++||++|++.-+.+++..+.+. ++++..++|...... -.....+|+|||-
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc
Confidence 568999999999999988887654 788999999532211 1124689999993
No 498
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=34.75 E-value=17 Score=32.74 Aligned_cols=18 Identities=28% Similarity=0.652 Sum_probs=15.1
Q ss_pred cCCceeEeccCCCchHHH
Q 007492 456 TNENILVCAPTGAGKTNI 473 (601)
Q Consensus 456 ~~~n~lv~ApTGsGKT~v 473 (601)
....+++.+++|+|||..
T Consensus 47 ~~~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345899999999999955
No 499
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=34.67 E-value=17 Score=31.57 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.0
Q ss_pred CceeEeccCCCchHHH
Q 007492 458 ENILVCAPTGAGKTNI 473 (601)
Q Consensus 458 ~n~lv~ApTGsGKT~v 473 (601)
-++++++++|+|||..
T Consensus 7 ~~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 3789999999999965
No 500
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=34.53 E-value=15 Score=33.00 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCceeEeccCCCchHHH
Q 007492 457 NENILVCAPTGAGKTNI 473 (601)
Q Consensus 457 ~~n~lv~ApTGsGKT~v 473 (601)
.-++++++++|+|||..
T Consensus 21 ~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp CEEEEEEEETTSSHHHH
T ss_pred eeEEEEECCCCCCHHHH
Confidence 45899999999999975
Done!