Query 007493
Match_columns 601
No_of_seqs 264 out of 1724
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 6.7E-45 2.3E-49 367.5 28.0 236 31-272 2-241 (257)
2 2i53_A Cyclin K; cell cycle, t 100.0 2.1E-44 7.4E-49 363.4 23.9 239 24-276 5-256 (258)
3 2pk2_A Cyclin-T1, protein TAT; 100.0 1.2E-43 4.2E-48 376.1 18.7 240 29-274 7-250 (358)
4 3rgf_B Cyclin-C; protein kinas 100.0 2.4E-43 8.1E-48 362.8 18.6 235 28-274 10-245 (285)
5 1zp2_A RNA polymerase II holoe 100.0 2.1E-40 7.3E-45 331.0 15.2 220 28-275 4-224 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 1.4E-38 4.9E-43 332.9 23.6 226 28-273 5-263 (323)
7 3g33_B CCND3 protein; Ser/Thr 100.0 9.4E-34 3.2E-38 294.4 14.2 209 45-275 55-271 (306)
8 2b9r_A Human cyclin B1; cell c 100.0 5.2E-33 1.8E-37 283.4 15.9 214 55-296 32-250 (269)
9 2w96_A G1/S-specific cyclin-D1 100.0 7.4E-33 2.5E-37 282.2 15.0 221 31-275 27-261 (271)
10 2cch_B Cyclin A2, cyclin-A; co 100.0 2.4E-32 8.1E-37 276.9 15.8 191 56-273 34-230 (260)
11 1g3n_C V-cyclin; cyclin-depend 100.0 5.9E-32 2E-36 273.5 16.5 200 54-274 44-251 (257)
12 2f2c_A Cyclin homolog, V-cycli 100.0 1.3E-31 4.5E-36 270.5 15.5 195 52-272 43-249 (254)
13 1c9b_A General transcription f 100.0 1.5E-30 5.2E-35 254.6 17.8 186 61-272 5-190 (207)
14 1w98_B Cyclin E, G1/S-specific 100.0 2.8E-29 9.7E-34 257.8 12.4 187 56-272 45-243 (283)
15 1f5q_B Gamma herpesvirus cycli 100.0 3.1E-28 1.1E-32 246.7 16.1 197 53-272 41-243 (252)
16 1ais_B TFB TFIIB, protein (tra 99.9 3.9E-26 1.3E-30 222.0 19.3 184 62-271 10-195 (200)
17 3k7a_M Transcription initiatio 99.9 8.2E-25 2.8E-29 230.7 5.5 183 62-270 127-321 (345)
18 4bbr_M Transcription initiatio 99.8 3E-19 1E-23 188.5 8.8 184 62-271 127-322 (345)
19 1ais_B TFB TFIIB, protein (tra 97.8 7.7E-05 2.6E-09 71.8 9.3 89 65-175 109-197 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 97.5 0.0004 1.4E-08 71.4 10.7 98 64-184 77-178 (293)
21 1c9b_A General transcription f 97.1 0.0012 4.1E-08 63.8 9.0 67 65-131 103-169 (207)
22 3k7a_M Transcription initiatio 95.1 0.0037 1.3E-07 65.6 0.0 67 65-131 236-302 (345)
23 4bbr_M Transcription initiatio 94.3 0.085 2.9E-06 55.4 8.0 91 177-271 126-216 (345)
24 1zp2_A RNA polymerase II holoe 94.2 0.19 6.4E-06 49.3 9.9 91 181-272 32-128 (235)
25 3h4c_A Transcription factor TF 93.9 1.1 3.7E-05 43.9 13.9 66 63-128 14-82 (260)
26 3rgf_B Cyclin-C; protein kinas 92.8 0.42 1.4E-05 48.5 10.0 92 181-273 47-152 (285)
27 2b9r_A Human cyclin B1; cell c 92.6 0.45 1.5E-05 47.7 9.7 92 182-274 43-134 (269)
28 1jkw_A Cyclin H; cell cycle, c 92.0 0.82 2.8E-05 47.2 11.0 89 182-274 62-159 (323)
29 2f2c_A Cyclin homolog, V-cycli 91.8 0.61 2.1E-05 46.2 9.4 95 181-276 56-150 (254)
30 3g33_B CCND3 protein; Ser/Thr 91.3 0.72 2.4E-05 47.3 9.6 95 182-277 76-170 (306)
31 1g3n_C V-cyclin; cyclin-depend 91.2 0.59 2E-05 46.4 8.6 93 181-274 55-147 (257)
32 2cch_B Cyclin A2, cyclin-A; co 90.6 0.62 2.1E-05 46.4 8.2 89 182-273 44-134 (260)
33 2w96_A G1/S-specific cyclin-D1 90.5 0.86 3E-05 45.6 9.2 93 182-275 62-154 (271)
34 2i53_A Cyclin K; cell cycle, t 90.2 0.29 9.8E-06 48.4 5.3 56 65-120 152-211 (258)
35 2ivx_A Cyclin-T2; transcriptio 89.7 0.75 2.6E-05 45.5 7.9 57 181-238 35-91 (257)
36 1w98_B Cyclin E, G1/S-specific 89.6 1.2 4E-05 45.1 9.4 91 182-275 55-148 (283)
37 2pk2_A Cyclin-T1, protein TAT; 88.3 0.75 2.6E-05 48.3 7.0 57 181-238 42-98 (358)
38 1f5q_B Gamma herpesvirus cycli 86.7 1.8 6E-05 43.3 8.4 94 182-276 54-147 (252)
39 3m03_A ORC6, origin recognitio 82.5 1.6 5.6E-05 37.6 5.0 60 68-128 6-70 (95)
40 3m03_A ORC6, origin recognitio 75.8 10 0.00036 32.6 8.0 81 186-271 8-93 (95)
41 2r7g_A PP110, retinoblastoma-a 70.5 20 0.00068 37.6 10.2 83 156-238 167-278 (347)
42 4ell_A Retinoblastoma-associat 67.9 13 0.00044 39.9 8.2 67 64-130 282-351 (411)
43 2qdj_A Retinoblastoma-associat 66.7 9.9 0.00034 39.2 6.9 64 68-131 6-73 (304)
44 2r7g_A PP110, retinoblastoma-a 66.4 13 0.00043 39.1 7.7 76 55-130 206-287 (347)
45 4elj_A Retinoblastoma-associat 55.3 32 0.0011 39.1 8.9 67 64-130 527-596 (656)
46 2pmi_B PHO85 cyclin PHO80, ami 48.7 50 0.0017 33.8 8.4 90 181-273 78-170 (293)
47 4ell_A Retinoblastoma-associat 42.8 51 0.0018 35.3 7.7 51 188-238 290-342 (411)
48 4elj_A Retinoblastoma-associat 39.7 50 0.0017 37.5 7.3 63 68-131 8-75 (656)
49 4a69_A Histone deacetylase 3,; 22.6 2.1E+02 0.0073 30.1 8.2 100 169-277 254-374 (376)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=6.7e-45 Score=367.55 Aligned_cols=236 Identities=34% Similarity=0.655 Sum_probs=215.8
Q ss_pred cccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHH
Q 007493 31 VARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVC 110 (601)
Q Consensus 31 ~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaAC 110 (601)
.++||||++|| +.+||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||+.+++.++++++||+||
T Consensus 2 ~~~w~~t~e~l-~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQL-ENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHH-HSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHH-HhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 36899999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHH
Q 007493 111 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK 190 (601)
Q Consensus 111 LfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~ 190 (601)
||||||+||+|+++++|+.+++.+.++..|. +...+..|...+++|+.||+.||++|+|+|.+++|+.||.+|++.
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~ 156 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL----LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQL 156 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC----CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccCCCC----CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHH
Confidence 9999999999999999999998877654332 111467888889999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHh-ccccccccchHHHHHHHHHHHHHHcCCCCCCC-Ccccccccc--CCCHHHHHHHHHHHH
Q 007493 191 FKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD-GDKVWWQEF--DVTPRQLEEVSNQML 266 (601)
Q Consensus 191 L~~~~~~L~qlA~~~LnDsl-~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~-~~~~W~~~f--dvt~eeL~ei~~eIL 266 (601)
++.. ..+.+.||+|+++++ .+++|+.|+|+.||+||||+|+.+++.++|.. +...||..| +++.++|.+|+.+|+
T Consensus 157 l~~~-~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~ 235 (257)
T 2ivx_A 157 VRAS-KDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFL 235 (257)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHH
Confidence 9876 468999999999998 58899999999999999999999999988853 246799988 799999999999999
Q ss_pred HHHhcC
Q 007493 267 ELYEQN 272 (601)
Q Consensus 267 eLY~~~ 272 (601)
++|...
T Consensus 236 ~~~~~~ 241 (257)
T 2ivx_A 236 QILEKT 241 (257)
T ss_dssp HHHHTS
T ss_pred HHHHhC
Confidence 999864
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-44 Score=363.41 Aligned_cols=239 Identities=36% Similarity=0.667 Sum_probs=213.8
Q ss_pred CCCcccccccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCch
Q 007493 24 SQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDR 103 (601)
Q Consensus 24 ~~~~~eq~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl 103 (601)
+...-....+|||+++|| ..+||+.+|++++.|..+|..+++||.++|..|+|++.|+++|++||||||+.+++.++++
T Consensus 5 ~~~~~~~~~~w~~~~~el-~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~ 83 (258)
T 2i53_A 5 SANLDHTKPCWYWDKKDL-AHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPR 83 (258)
T ss_dssp CCSCSSCSSSCCCCGGGG-GGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH
T ss_pred hhhhhhhccCCccCHHHH-HhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCH
Confidence 334446678999999999 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHH----HHHHHHHHHHHHHHHHhCCcccccC
Q 007493 104 RTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYE----QQKELILLGERVVLATLGFDLNVHH 179 (601)
Q Consensus 104 ~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~----~~ke~Il~~E~~IL~tL~FDL~v~~ 179 (601)
++||+||||||||+||+++++++|+.+++.++. ...|. ..+++|+.||+.||++|+|+|.+++
T Consensus 84 qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~ 150 (258)
T 2i53_A 84 YVTGACCLFLAGKVEETPKKCKDIIKTARSLLN-------------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEH 150 (258)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSC-------------HHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHHHHHHHHHHccccccccHHHHHHHHHHHhc-------------hhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccC
Confidence 999999999999999999999999988765431 22231 1478999999999999999999999
Q ss_pred cHHHHHHHHHHhccchH---HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCC----Ccccccccc-
Q 007493 180 PYKPLVEAIKKFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD----GDKVWWQEF- 251 (601)
Q Consensus 180 P~~fL~~fl~~L~~~~~---~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~----~~~~W~~~f- 251 (601)
|+.||.+|++.++.+.+ .+.+.||+++++++.++.|+.|+|+.||+||||+|+.+++.++|.. ....||..|
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~ 230 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFV 230 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTS
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhc
Confidence 99999999999887653 6899999999999999999999999999999999999999876531 235799998
Q ss_pred -CCCHHHHHHHHHHHHHHHhcCCCCC
Q 007493 252 -DVTPRQLEEVSNQMLELYEQNRVPQ 276 (601)
Q Consensus 252 -dvt~eeL~ei~~eILeLY~~~~~~~ 276 (601)
+++.++|.+|+.+|+++|+..+..+
T Consensus 231 ~~~~~~~l~~~~~~il~ly~~~~~~~ 256 (258)
T 2i53_A 231 QDVPVDVLEDICHQILDLYSQGKQQM 256 (258)
T ss_dssp SSCCHHHHHHHHHHHHTTTSSSCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999876554
No 3
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=1.2e-43 Score=376.13 Aligned_cols=240 Identities=35% Similarity=0.633 Sum_probs=216.8
Q ss_pred cccccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHH
Q 007493 29 EEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIAT 108 (601)
Q Consensus 29 eq~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAa 108 (601)
.+..+||||++|| +.+||+.+||+.+.|..+|..+++||.++|..|+|++.|+++|++||||||+.+++..+++++|++
T Consensus 7 ~~~~~wlft~eeL-~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~ 85 (358)
T 2pk2_A 7 NNNKRWYFTREQL-ENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAP 85 (358)
T ss_dssp -CCSSSSCCSHHH-HTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHH
T ss_pred CCCCCceeCHHHH-HhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 4568999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHH
Q 007493 109 VCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAI 188 (601)
Q Consensus 109 ACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl 188 (601)
||||||||+||+++++++|+.+++.++++..+.. ...+..|...+++|+.||+.||++|+|+|.+++|+.||..|+
T Consensus 86 acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~----~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~ 161 (358)
T 2pk2_A 86 AALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCT 161 (358)
T ss_dssp HHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCC----CTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhccccccc----cccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHH
Confidence 9999999999999999999999888776544321 114577877789999999999999999999999999999999
Q ss_pred HHhccchHHHHHHHHHHHHHHh-ccccccccchHHHHHHHHHHHHHHcCCCCCCC-Ccccccccc--CCCHHHHHHHHHH
Q 007493 189 KKFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD-GDKVWWQEF--DVTPRQLEEVSNQ 264 (601)
Q Consensus 189 ~~L~~~~~~L~qlA~~~LnDsl-~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~-~~~~W~~~f--dvt~eeL~ei~~e 264 (601)
+.+... ..+.+.||+|+++++ .+++|+.|+|+.||+||||+|+.++++++|.. ....||..| +|+.++|.+|+.+
T Consensus 162 ~~l~~~-~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 162 QLVRAS-KDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHE 240 (358)
T ss_dssp HHTTCC-HHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHH
T ss_pred HHcCCC-HHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHH
Confidence 998876 469999999999998 48899999999999999999999999988853 246799998 6899999999999
Q ss_pred HHHHHhcCCC
Q 007493 265 MLELYEQNRV 274 (601)
Q Consensus 265 ILeLY~~~~~ 274 (601)
|+++|.....
T Consensus 241 il~~y~~~~~ 250 (358)
T 2pk2_A 241 FLQILEKTPN 250 (358)
T ss_dssp HHHHTTTCTT
T ss_pred HHHHHHhCcc
Confidence 9999976543
No 4
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=362.78 Aligned_cols=235 Identities=27% Similarity=0.429 Sum_probs=208.7
Q ss_pred ccccccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHH
Q 007493 28 PEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIA 107 (601)
Q Consensus 28 ~eq~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVA 107 (601)
+.+..+||||++||...+++..++++.++|..+|..+++||.++|..|+||+.|+++|++||||||+.+++..+++++||
T Consensus 10 Ss~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva 89 (285)
T 3rgf_B 10 SSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMA 89 (285)
T ss_dssp SHHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHH
T ss_pred ccccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHH
Confidence 35779999999999877676889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCC-hHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHH
Q 007493 108 TVCMFLAGKVEETPRP-LKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVE 186 (601)
Q Consensus 108 aACLfLA~KvEE~prk-L~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~ 186 (601)
+||||||||+||++++ +++|+.++..+....... + ..+.|...+++|+.||+.||++|+|+|.+++||.||.+
T Consensus 90 ~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~----~--~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~ 163 (285)
T 3rgf_B 90 PTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSY----A--FPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQ 163 (285)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTT----T--CCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHH
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHcccccc----c--CchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHH
Confidence 9999999999999985 889998876654221100 0 11122235789999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 007493 187 AIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQML 266 (601)
Q Consensus 187 fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eIL 266 (601)
|++.++.. ..+.+.||+|+++++.+++|+.|+|+.||+||||+|+.+++.+. ..||..|+++.++|.+|+.+|+
T Consensus 164 ~~~~l~~~-~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~-----~~W~~~~~~~~~~l~~~~~~il 237 (285)
T 3rgf_B 164 YVQDMGQE-DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA-----RQWFAELSVDMEKILEIIRVIL 237 (285)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC-----HHHHHTSCSCHHHHHHHHHHHH
T ss_pred HHHHhCCC-HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh-----hhHHHHHCCCHHHHHHHHHHHH
Confidence 99999875 47999999999999999999999999999999999999998743 4799999999999999999999
Q ss_pred HHHhcCCC
Q 007493 267 ELYEQNRV 274 (601)
Q Consensus 267 eLY~~~~~ 274 (601)
++|..++.
T Consensus 238 ~ly~~~~~ 245 (285)
T 3rgf_B 238 KLYEQWKN 245 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 99998654
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-40 Score=330.98 Aligned_cols=220 Identities=21% Similarity=0.344 Sum_probs=192.9
Q ss_pred ccccccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCC-CchhHH
Q 007493 28 PEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAK-NDRRTI 106 (601)
Q Consensus 28 ~eq~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~-~dl~lV 106 (601)
+.+..+||||++||.. +|+..++ + |..+++||.++|..|+||+.|+++|++||+|||+.+++.+ +++++|
T Consensus 4 Ss~~~~w~ft~~~l~~-~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv 74 (235)
T 1zp2_A 4 SSQLTQLFLSTDLESL-EPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEAL 74 (235)
T ss_dssp CGGGTGGGSCSSCTTS-SCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHH
T ss_pred cCCCCCCccCHHHHHH-CCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHH
Confidence 3678999999999965 4443331 2 9999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHH
Q 007493 107 ATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVE 186 (601)
Q Consensus 107 AaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~ 186 (601)
|+||||||||+||+++++++|+.+++.++.. .|...+++|+.||+.||++|+|+|.+++|+.||.+
T Consensus 75 ~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~--------------~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~ 140 (235)
T 1zp2_A 75 VATCIYLSCKVEECPVHIRTICNEANDLWSL--------------KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQ 140 (235)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC--------------SSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHH
T ss_pred HHHHHHHHhccccCcccHHHHHHHHHHHccc--------------hhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHH
Confidence 9999999999999999999999887654310 01124688999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 007493 187 AIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQML 266 (601)
Q Consensus 187 fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eIL 266 (601)
|++.++.+. ++.+.||+|+++++.+++|+.|+|+.||+||||+|+.+++..+|. ...||+ +++.++|.+|+.+|+
T Consensus 141 ~~~~~~~~~-~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~~i~ 215 (235)
T 1zp2_A 141 AFHDGIINQ-KQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK--LLDLIK--STDAFKVILCVQRII 215 (235)
T ss_dssp HHHTTSSCH-HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH--HHHHCC--HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCH-HHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC--Ccchhh--cCCHHHHHHHHHHHH
Confidence 999988764 688999999999999999999999999999999999999876553 235776 999999999999999
Q ss_pred HHHhcCCCC
Q 007493 267 ELYEQNRVP 275 (601)
Q Consensus 267 eLY~~~~~~ 275 (601)
++|......
T Consensus 216 ~ly~~~~~~ 224 (235)
T 1zp2_A 216 SIYYFEDIE 224 (235)
T ss_dssp HHHTSSSHH
T ss_pred HHHhhCCcC
Confidence 999986554
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1.4e-38 Score=332.92 Aligned_cols=226 Identities=25% Similarity=0.355 Sum_probs=192.9
Q ss_pred ccccccccccH-HHHhhh------------------CCCccCCCCHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHH
Q 007493 28 PEEVARWYFSR-REIEDS------------------SPSRRDGIDLKKETYLRKSYCTFLQDLGMRLK--VPQVTIATAI 86 (601)
Q Consensus 28 ~eq~~~WyFT~-eELee~------------------sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~Lk--Lp~~TiaTAi 86 (601)
++|...|+||+ ++|.+. .++..+|+++++|..+|.++++||.++|..|+ ||+.|++||+
T Consensus 5 Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~ 84 (323)
T 1jkw_A 5 SSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTAC 84 (323)
T ss_dssp ------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 47889999995 777532 36788999999999999999999999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHH
Q 007493 87 IFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERV 166 (601)
Q Consensus 87 ~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~ 166 (601)
+||||||+.+++..+++++||+||||||||+||+++++++|+.++ +.+| ..+..++++|+.||+.
T Consensus 85 ~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~-----~~~p----------~~~~~~~~~Il~~E~~ 149 (323)
T 1jkw_A 85 MYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNL-----RESP----------LGQEKALEQILEYELL 149 (323)
T ss_dssp HHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGS-----SSCH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHh-----ccCh----------hhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987532 1111 1123468999999999
Q ss_pred HHHHhCCcccccCcHHHHHHHHHHhc-----c-chHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCC
Q 007493 167 VLATLGFDLNVHHPYKPLVEAIKKFK-----V-AQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLP 240 (601)
Q Consensus 167 IL~tL~FDL~v~~P~~fL~~fl~~L~-----~-~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP 240 (601)
||++|+|+|.+++||.||..|+..+. + ....+.+.||+|+++++.+++|+.|+|+.||+||||+|+..++..+|
T Consensus 150 iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 150 LIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITME 229 (323)
T ss_dssp HHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999997762 2 23468899999999999999999999999999999999999998766
Q ss_pred CCCccccccc-cC-----CCHHHHHHHHHHHHHHHhcCC
Q 007493 241 SDGDKVWWQE-FD-----VTPRQLEEVSNQMLELYEQNR 273 (601)
Q Consensus 241 ~~~~~~W~~~-fd-----vt~eeL~ei~~eILeLY~~~~ 273 (601)
. |+.. |+ ++.++|.+++.+|..+|....
T Consensus 230 ~-----w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~ 263 (323)
T 1jkw_A 230 S-----YLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE 263 (323)
T ss_dssp T-----HHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCC
T ss_pred H-----HHHHHhccccccccHHHHHHHHHHHHHHHHccC
Confidence 3 8874 33 478999999999999999875
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-34 Score=294.41 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=176.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC-CCC
Q 007493 45 SPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET-PRP 123 (601)
Q Consensus 45 sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~-prk 123 (601)
+|+..+++..+.+..+|..+++||.+++..|+|++.|+++|++|||||++..++...++++||+||||||||+||. ++.
T Consensus 55 ~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~ 134 (306)
T 3g33_B 55 RASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 134 (306)
T ss_dssp SSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3445566666677789999999999999999999999999999999999999999999999999999999999986 567
Q ss_pred hHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchH---HHHH
Q 007493 124 LKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQN---ALAQ 200 (601)
Q Consensus 124 L~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~---~L~q 200 (601)
+++++.++... | .+++|+.||+.||++|+|+|.+++|+.||..|+..++...+ .+.+
T Consensus 135 ~~~l~~~~~~~------------------~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~ 194 (306)
T 3g33_B 135 IEKLCIYTDHA------------------V--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK 194 (306)
T ss_dssp TTHHHHHTTTS------------------S--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHH
T ss_pred HHHHHHHhccC------------------c--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHH
Confidence 99887654211 1 36789999999999999999999999999999998876532 3668
Q ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCcccccccc----CCCHHHHHHHHHHHHHHHhcCCCC
Q 007493 201 VAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVSNQMLELYEQNRVP 275 (601)
Q Consensus 201 lA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~f----dvt~eeL~ei~~eILeLY~~~~~~ 275 (601)
.||+|+++++.+..|+.|+|+.||+||||+|+..++...+. ...|+..+ |++.++|.+|+..|+++|.....+
T Consensus 195 ~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w--~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~ 271 (306)
T 3g33_B 195 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMS--GDELTELLAGITGTEVDCLRACQEQIEAALRESLRE 271 (306)
T ss_dssp HHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999853211 12355444 999999999999999999975443
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=5.2e-33 Score=283.36 Aligned_cols=214 Identities=22% Similarity=0.246 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC-CCChHHHHHHHHH
Q 007493 55 KKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET-PRPLKDVIIVSYE 133 (601)
Q Consensus 55 e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~-prkL~dIi~Vs~~ 133 (601)
+-...+|..+++||.++|..|+|+++|+++|++|||||+...++.+.++++||+||||||||+||. ++.+++++.++..
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 345679999999999999999999999999999999999999999999999999999999999998 6789999865421
Q ss_pred HHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Q 007493 134 IIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTS 213 (601)
Q Consensus 134 l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~ 213 (601)
.| .+++|+.||+.||++|+|++.+++|+.||.+|++.++.+ ..+...||+++++++.+.
T Consensus 112 ------------------~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~-~~~~~~a~~l~e~sl~~~ 170 (269)
T 2b9r_A 112 ------------------TY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-VEQHTLAKYLMELTMLDY 170 (269)
T ss_dssp ------------------SS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC-HHHHHHHHHHHHHGGGCG
T ss_pred ------------------CC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhh
Confidence 11 368899999999999999999999999999999988765 468899999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHcCCCCCCCCcccccccc----CCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCC
Q 007493 214 LCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGA 289 (601)
Q Consensus 214 l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~f----dvt~eeL~ei~~eILeLY~~~~~~~~~~~~~~~s~~~~ 289 (601)
.|+.|+|+.||+||||+|+..++.. .|+..+ |++.++|.+|+..|.++|.....+......+....+..
T Consensus 171 ~~~~~~Ps~iAaAai~lA~~~l~~~-------~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~Ky~~~ 243 (269)
T 2b9r_A 171 DMVHFPPSQIAAGAFSLALKILDNG-------EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATS 243 (269)
T ss_dssp GGSSSCTTHHHHHHHHHHHHHHTCC-------CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHHHTTSG
T ss_pred hhhcCCHHHHHHHHHHHHHHHhCCC-------CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhcch
Confidence 9999999999999999999999863 577654 99999999999999999998766555555565544444
Q ss_pred CCCCCCC
Q 007493 290 SSHRPQK 296 (601)
Q Consensus 290 ~~qr~~k 296 (601)
.+.++++
T Consensus 244 ~~~~vs~ 250 (269)
T 2b9r_A 244 KHAKIST 250 (269)
T ss_dssp GGTTGGG
T ss_pred hhCcccC
Confidence 5555553
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=7.4e-33 Score=282.17 Aligned_cols=221 Identities=20% Similarity=0.278 Sum_probs=181.9
Q ss_pred cccccccHHHHhhhCCCc--cCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHH
Q 007493 31 VARWYFSRREIEDSSPSR--RDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIAT 108 (601)
Q Consensus 31 ~~~WyFT~eELee~sPSr--~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAa 108 (601)
.-.+++..|+- ..|+. ..++..+-...+|..+++||.+++..|++++.|+++|++|||||++..++.+.++++||+
T Consensus 27 i~~~l~~~E~~--~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~ 104 (271)
T 2w96_A 27 VLRAMLKAEET--CAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGA 104 (271)
T ss_dssp HHHHHHHHHHH--TCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHH
T ss_pred HHHHHHHHHHH--hCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHH
Confidence 33445555443 34442 222333345679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCC-CCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHH
Q 007493 109 VCMFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEA 187 (601)
Q Consensus 109 ACLfLA~KvEE~-prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~f 187 (601)
||||||||+||. |+.+++++.++.. .| ++++|+.||+.||++|+|+|.+++|+.||..|
T Consensus 105 acL~iAsK~EE~~p~~~~~~~~~~~~------------------~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~ 164 (271)
T 2w96_A 105 TCMFVASKMKETIPLTAEKLCIYTDN------------------SI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHF 164 (271)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHTTT------------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHhcC------------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 999999999998 8899998765321 12 46899999999999999999999999999999
Q ss_pred HHHhccchHH---HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccc--------cCCCHH
Q 007493 188 IKKFKVAQNA---LAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQE--------FDVTPR 256 (601)
Q Consensus 188 l~~L~~~~~~---L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~--------fdvt~e 256 (601)
+..++...+. +.+.|++|++.++.+..|+.|+|+.||+||||+|+..++.+.+. .+.|+.. +|++.+
T Consensus 165 ~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~--~~~w~~~~~~~l~~~~~v~~~ 242 (271)
T 2w96_A 165 LSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPN--NFLSYYRLTRFLSRVIKCDPD 242 (271)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTT--SCGGGTTHHHHHHHHHTSCHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCC--CCCcHHHHHHHHHHHHCcCHH
Confidence 9998876432 45689999999998889999999999999999999998764332 2346542 599999
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 007493 257 QLEEVSNQMLELYEQNRVP 275 (601)
Q Consensus 257 eL~ei~~eILeLY~~~~~~ 275 (601)
+|.+|+..|+++|.....+
T Consensus 243 ~l~~c~~~i~~l~~~~~~~ 261 (271)
T 2w96_A 243 CLRACQEQIEALLESSLRQ 261 (271)
T ss_dssp HHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976554
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.98 E-value=2.4e-32 Score=276.87 Aligned_cols=191 Identities=22% Similarity=0.296 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC-CCChHHHHHHHHHH
Q 007493 56 KETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET-PRPLKDVIIVSYEI 134 (601)
Q Consensus 56 ~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~-prkL~dIi~Vs~~l 134 (601)
-...+|..+++||.+++..|+|++.|+++|++|||||++..++.+.++++||+||||||||+||. ++++++++.++..
T Consensus 34 i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~- 112 (260)
T 2cch_B 34 ITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD- 112 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC-
Confidence 34579999999999999999999999999999999999999999999999999999999999998 8899999875421
Q ss_pred HhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Q 007493 135 IHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSL 214 (601)
Q Consensus 135 ~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l 214 (601)
.| .+++|+.||+.||++|+|++.+++|+.||..|+..++.+...+...||+++++++.+..
T Consensus 113 -----------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~ 173 (260)
T 2cch_B 113 -----------------TY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDAD 173 (260)
T ss_dssp -----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHH
T ss_pred -----------------Cc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHH
Confidence 11 36889999999999999999999999999999999987655789999999999998877
Q ss_pred -ccccchHHHHHHHHHHHHHHcCCCCCCCCcccccccc----CCCHHHHHHHHHHHHHHHhcCC
Q 007493 215 -CLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVSNQMLELYEQNR 273 (601)
Q Consensus 215 -~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~f----dvt~eeL~ei~~eILeLY~~~~ 273 (601)
|+.|+|+.||+||||+|+..++. +.|+..+ |++.++|.+|+..|.++|....
T Consensus 174 ~~~~~~Ps~iAaAai~lA~~~~~~-------~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~ 230 (260)
T 2cch_B 174 PYLKYLPSVIAGAAFHLALYTVTG-------QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAP 230 (260)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHS-------CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhCC-------CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875 3588765 9999999999999999998744
No 11
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=5.9e-32 Score=273.54 Aligned_cols=200 Identities=12% Similarity=0.130 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC-CCChHHHHHHHH
Q 007493 54 LKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET-PRPLKDVIIVSY 132 (601)
Q Consensus 54 ~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~-prkL~dIi~Vs~ 132 (601)
.+....+|..+++||.+++..|+|+++|+++|++|||||++.+++.+.++++||+||||||||+||. ++++++++.++.
T Consensus 44 ~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 123 (257)
T 1g3n_C 44 QSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA 123 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC
Confidence 3345679999999999999999999999999999999999999999999999999999999999997 788999886542
Q ss_pred HHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchH---HHHHHHHHHHHHH
Q 007493 133 EIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQN---ALAQVAWNFVNDG 209 (601)
Q Consensus 133 ~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~---~L~qlA~~~LnDs 209 (601)
. .| .+++|+.||+.||++|+|++.+++|+.||..|+..++.+.+ .+.+.|+++++.+
T Consensus 124 ~------------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~ 183 (257)
T 1g3n_C 124 D------------------SF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKA 183 (257)
T ss_dssp T------------------CS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHH
T ss_pred C------------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 1 11 36889999999999999999999999999999999876532 3567899999999
Q ss_pred hccccccccchHHHHHHHHHHHHHHcCCCCCCCCcccccccc----CCCHHHHHHHHHHHHHHHhcCCC
Q 007493 210 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVSNQMLELYEQNRV 274 (601)
Q Consensus 210 l~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~f----dvt~eeL~ei~~eILeLY~~~~~ 274 (601)
+.+..|+.|+|+.||+||||+|+..++.+.+. ....|+..+ |++.++|.+|+..|.++|.....
T Consensus 184 l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~-~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~ 251 (257)
T 1g3n_C 184 LVDPLTGSLPASIISAAGCALLVPANVIPQDT-HSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDL 251 (257)
T ss_dssp HTSTTGGGSCHHHHHHHHHHHHCCGGGSCC------CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HhCcchhCcCHHHHHHHHHHHHHHHhCCCccc-chhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCH
Confidence 99999999999999999999999998864321 123577654 99999999999999999987543
No 12
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.97 E-value=1.3e-31 Score=270.53 Aligned_cols=195 Identities=14% Similarity=0.261 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC-CCChHHHHHH
Q 007493 52 IDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET-PRPLKDVIIV 130 (601)
Q Consensus 52 Is~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~-prkL~dIi~V 130 (601)
...+....+|..+++||.+++..|+|+++|+++|++|||||++.+++.+.++++||+||||||||+||. ++.+++++.+
T Consensus 43 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 444556789999999999999999999999999999999999999999999999999999999999995 7889988754
Q ss_pred HHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchH---HHHHHHHHHHH
Q 007493 131 SYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQN---ALAQVAWNFVN 207 (601)
Q Consensus 131 s~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~---~L~qlA~~~Ln 207 (601)
+.. .| ++++|+.||+.||++|+|++.+++|+.||..|+..++.+.+ .+...|+++++
T Consensus 123 ~~~------------------~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~ 182 (254)
T 2f2c_A 123 SCD------------------CF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTIC 182 (254)
T ss_dssp C---------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred hCC------------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Confidence 321 22 46889999999999999999999999999999999876543 25678999999
Q ss_pred HHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccc----c----ccCCCHHHHHHHHHHHHHHHhcC
Q 007493 208 DGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWW----Q----EFDVTPRQLEEVSNQMLELYEQN 272 (601)
Q Consensus 208 Dsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~----~----~fdvt~eeL~ei~~eILeLY~~~ 272 (601)
.++.+..|+.|+|+.||+||||+|...++. .+.|| . ..|++.++|.+|+..|.+++...
T Consensus 183 ~~l~d~~~~~~~PS~iAaAai~la~~~~~~------~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~ 249 (254)
T 2f2c_A 183 KALIQPNIALLSPGLICAGGLLTTIETDNT------NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLY 249 (254)
T ss_dssp HHTTSGGGTTSCHHHHHHHHHHHHHHTTCC------SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCcchhccCHHHHHHHHHHHHHHhcCC------CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998521 12334 2 23999999999999999999754
No 13
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=1.5e-30 Score=254.64 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCC
Q 007493 61 RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDS 140 (601)
Q Consensus 61 R~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP 140 (601)
...++++|.++|..|+||+.|+++|++||+|||..+++..+++++|++||||||||+||+|+++++|+.++.
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-------- 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-------- 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred CchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccch
Q 007493 141 TAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKP 220 (601)
Q Consensus 141 ~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~P 220 (601)
+ .+.+|..+|+.||+.|+|++.+++|+.||.+|+..++++. .+.+.||.++++++.+.++++|+|
T Consensus 77 -----~---------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-~~~~~A~~i~~~~~~~~l~~g~~P 141 (207)
T 1c9b_A 77 -----I---------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-QVQMAATHIARKAVELDLVPGRSP 141 (207)
T ss_dssp -----S---------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTCSTTCCH
T ss_pred -----C---------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCccCCCCh
Confidence 1 1457889999999999999999999999999999999874 688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHhcC
Q 007493 221 HHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQN 272 (601)
Q Consensus 221 s~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eILeLY~~~ 272 (601)
+.||+||||+|+++++.+.+. ..|+..++++..+|..++.+|.+.....
T Consensus 142 ~~IAaAaiylA~~~~~~~~~~---~~i~~~~~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 142 ISVAAAAIYMASQASAEKRTQ---KEIGDIAGVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHHHHHHHHHHHTSSSCCCH---HHHHHHHTCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987654 4688899999999999999998876643
No 14
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=2.8e-29 Score=257.79 Aligned_cols=187 Identities=17% Similarity=0.147 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc-CCCCCCchhHHHHHHHHHhccCCCC-CCChHHHHHHHHH
Q 007493 56 KETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIR-QSHAKNDRRTIATVCMFLAGKVEET-PRPLKDVIIVSYE 133 (601)
Q Consensus 56 ~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~-~S~~~~dl~lVAaACLfLA~KvEE~-prkL~dIi~Vs~~ 133 (601)
....+|..+++||.+++..|+|+++|+++|++|||||++. .++.+.++++||+||||||||+||. ++.+++++.++..
T Consensus 45 i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~ 124 (283)
T 1w98_B 45 LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG 124 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC
Confidence 3457999999999999999999999999999999999998 6899999999999999999999998 7789998765321
Q ss_pred HHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchH----------HHHHHHH
Q 007493 134 IIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQN----------ALAQVAW 203 (601)
Q Consensus 134 l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~----------~L~qlA~ 203 (601)
.| .+++|+.||+.||++|+|++.+++|+.||..|+..++.... .....+.
T Consensus 125 ------------------~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (283)
T 1w98_B 125 ------------------AC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIA 184 (283)
T ss_dssp ------------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHH
T ss_pred ------------------CC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHH
Confidence 12 36889999999999999999999999999999988754321 2233466
Q ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHhcC
Q 007493 204 NFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQN 272 (601)
Q Consensus 204 ~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eILeLY~~~ 272 (601)
++++.++.+..|+.|+|+.||+||||+|+. ...|...+|++.++|.+|+..|..++...
T Consensus 185 ~llelsl~d~~~l~~~PS~iAaAai~la~~----------~~~l~~~tg~~~~~i~~c~~~l~~~~~~~ 243 (283)
T 1w98_B 185 ELLDLCVLDVDCLEFPYGILAASALYHFSS----------SELMQKVSGYQWCDIENCVKWMVPFAMVI 243 (283)
T ss_dssp HHHHHHHHSGGGGGSCHHHHHHHHHHHTSC----------HHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcCCHHHHHHHHHHHHHC----------hHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 789999989999999999999999999862 23577888999999999999999999864
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.95 E-value=3.1e-28 Score=246.69 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC-CCChHHHHHHH
Q 007493 53 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET-PRPLKDVIIVS 131 (601)
Q Consensus 53 s~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~-prkL~dIi~Vs 131 (601)
..+....+|..+++||.+++..|+|.++|+++|++|||||++...+.+.++++||+||||||||+||. |+.+.+++.++
T Consensus 41 q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~ 120 (252)
T 1f5q_B 41 DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLC 120 (252)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHh
Confidence 34445669999999999999999999999999999999999999999999999999999999999997 66788887654
Q ss_pred HHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHHhccchH---HHHHHHHHHHHH
Q 007493 132 YEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQN---ALAQVAWNFVND 208 (601)
Q Consensus 132 ~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~L~~~~~---~L~qlA~~~LnD 208 (601)
... | ++++|+.||+.||++|+|+|++++|+.||..|++.++...+ .+...|++++..
T Consensus 121 ~~~------------------y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~ 180 (252)
T 1f5q_B 121 GGA------------------T--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFC 180 (252)
T ss_dssp CTT------------------C--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC------------------C--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence 321 2 36889999999999999999999999999999999876543 366789999999
Q ss_pred HhccccccccchHHHHHHHHHHHHHHcCCCCCCCC--ccccccccCCCHHHHHHHHHHHHHHHhcC
Q 007493 209 GLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG--DKVWWQEFDVTPRQLEEVSNQMLELYEQN 272 (601)
Q Consensus 209 sl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~--~~~W~~~fdvt~eeL~ei~~eILeLY~~~ 272 (601)
++.++.++.|+||.||+||+.++. +...|... ...+....+++.++|.+|++.|.+++...
T Consensus 181 ~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 181 ALCDGRSAMKRPVLITLACMHLTM---NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHCHHHHTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHhchhhhccCHHHHHHHHHHHHh---ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999965544 22111100 00112345999999999999999988654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.94 E-value=3.9e-26 Score=221.99 Aligned_cols=184 Identities=14% Similarity=0.185 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCC
Q 007493 62 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDST 141 (601)
Q Consensus 62 ~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~ 141 (601)
..++++|.++|..|+||+.|+.+|+.||+||+..+.+...++..|++||||+|||.|+.|+.++||+.++.
T Consensus 10 ~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~--------- 80 (200)
T 1ais_B 10 AFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR--------- 80 (200)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC---------
Confidence 58999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred chhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccc--cCcHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccc
Q 007493 142 APQRIRQQKEVYEQQKELILLGERVVLATLGFDLNV--HHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFK 219 (601)
Q Consensus 142 ~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v--~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~ 219 (601)
+ .+.+|..+++.|++.|+|++.+ .+|+.||.+|+..|+++. .+.+.||.+++++..+.++.+++
T Consensus 81 ----v---------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~~~~~gr~ 146 (200)
T 1ais_B 81 ----V---------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKRGLTSGKS 146 (200)
T ss_dssp ----S---------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHTTCCTTSC
T ss_pred ----C---------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCcccCCC
Confidence 1 1457889999999999999999 999999999999999874 68999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHhc
Q 007493 220 PHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQ 271 (601)
Q Consensus 220 Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eILeLY~~ 271 (601)
|+.||+||||+|+++++.+.+. ..|....+++..+|..++.+|...+..
T Consensus 147 P~~iAaAaly~A~~~~~~~~t~---~ei~~~~~vs~~ti~~~~~~l~~~l~~ 195 (200)
T 1ais_B 147 PAGLVAAALYIASLLEGEKRTQ---REVAEVARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH---HHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCCH---HHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999986543 356777799999999999999988763
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.2e-25 Score=230.71 Aligned_cols=183 Identities=10% Similarity=0.062 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCC
Q 007493 62 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDST 141 (601)
Q Consensus 62 ~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~ 141 (601)
..++.+|..+|..|+||+.++.+|+.||+||+..+.++...+..|++||||||||.|+.|+.+++|+.++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~--------- 197 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC---------
Confidence 46789999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred chhhhccchHHHHHHHHHHHHHHHHHHHHhC------------CcccccCcHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 007493 142 APQRIRQQKEVYEQQKELILLGERVVLATLG------------FDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDG 209 (601)
Q Consensus 142 ~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~------------FDL~v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDs 209 (601)
+ .+.+|..+++.|++.|+ |++.+.+|+.||.+|+..|+++ ..+.+.||.+++++
T Consensus 198 ----v---------~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~-~~v~~~A~~i~~~~ 263 (345)
T 3k7a_M 198 ----V---------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP-MQVTTSAEYTAKKC 263 (345)
T ss_dssp ----C---------CSHHHHHHHHHHHHHHTCC-----------------------------------------------
T ss_pred ----C---------CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 1 13568888889999888 9999999999999999999987 46999999999999
Q ss_pred hccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHh
Q 007493 210 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYE 270 (601)
Q Consensus 210 l~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eILeLY~ 270 (601)
..+.++..++|..||+||||+|+.+++.+++. ..|...++|+..+|..++.+|.+++.
T Consensus 264 ~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~---~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 264 KEIKEIAGKSPITIAVVSIYLNILLFQIPITA---AKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -------------------------------------------------------------
T ss_pred HHhchhcCCCHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987665 46899999999999999999998875
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.77 E-value=3e-19 Score=188.49 Aligned_cols=184 Identities=10% Similarity=0.062 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCC
Q 007493 62 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDST 141 (601)
Q Consensus 62 ~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~ 141 (601)
..+...|.++|..|+||..+..+|+.||++++..+.++......|++||||+|||.++.|+.+++|..++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~--------- 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC---------
Confidence 56788999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred chhhhccchHHHHHHHHHHHHHHHHHHHHhCCc------------ccccCcHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 007493 142 APQRIRQQKEVYEQQKELILLGERVVLATLGFD------------LNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDG 209 (601)
Q Consensus 142 ~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FD------------L~v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDs 209 (601)
+ .+.+|....+.|++.|++. +...+|..||.+|+..|+++. ++...|+.++..+
T Consensus 198 ----v---------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-~v~~~A~~i~~~~ 263 (345)
T 4bbr_M 198 ----V---------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKKC 263 (345)
T ss_dssp ----C---------CTTHHHHHHHHHHHCC--------------------------------------------------
T ss_pred ----C---------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHH
Confidence 1 1235677778888888863 677899999999999999874 6899999999999
Q ss_pred hccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHhc
Q 007493 210 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQ 271 (601)
Q Consensus 210 l~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei~~eILeLY~~ 271 (601)
....++....|..||+||||+|+.+++..++. .......+|+..+|...+.+|++....
T Consensus 264 ~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~---~eIa~v~~Vse~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 264 KEIKEIAGKSPITIAVVSIYLNILLFQIPITA---AKVGQTLQVTEGTIKSGYKILYEHRDK 322 (345)
T ss_dssp --------------------------------------------------------------
T ss_pred HhcccccCCChHHHHHHHHHHHHHHhCCCCCH---HHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987765 346677899999999999998876554
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.76 E-value=7.7e-05 Score=71.79 Aligned_cols=89 Identities=11% Similarity=0.192 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHHHHHHhcCCCCchh
Q 007493 65 CTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQ 144 (601)
Q Consensus 65 v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~ 144 (601)
..||..+|..|+|+..+..+|..++.+......+..+.+..||+||||+||+....++++++|..++.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~------------ 176 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVAR------------ 176 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC------------
Confidence 47899999999999999999999999999888888999999999999999999999999999987653
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhCCcc
Q 007493 145 RIRQQKEVYEQQKELILLGERVVLATLGFDL 175 (601)
Q Consensus 145 rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL 175 (601)
+ ....|...-..|.+.|++.+
T Consensus 177 -v---------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 177 -V---------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp -C---------CHHHHHHHHHHHHHHHTCCC
T ss_pred -C---------CHHHHHHHHHHHHHHcCCCC
Confidence 1 12346666677778888665
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.50 E-value=0.0004 Score=71.44 Aligned_cols=98 Identities=7% Similarity=-0.022 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCC---CCCCchhHHHHHHHHHhccCCC-CCCChHHHHHHHHHHHhcCC
Q 007493 64 YCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQS---HAKNDRRTIATVCMFLAGKVEE-TPRPLKDVIIVSYEIIHKKD 139 (601)
Q Consensus 64 ~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S---~~~~dl~lVAaACLfLA~KvEE-~prkL~dIi~Vs~~l~~k~d 139 (601)
+.+||.+|...-+++..|+-.|++|++|+..... +.....+-+.+|||.||+|+-+ ....-+....|.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-------- 148 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-------- 148 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--------
Confidence 4568889999999999999999999999987533 3456788999999999999744 433333333321
Q ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHH
Q 007493 140 STAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPL 184 (601)
Q Consensus 140 P~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL 184 (601)
.+ ...+|-.||+.+|..|+|+|.|.. ..|.
T Consensus 149 -----Gi---------sl~ELN~LE~eFL~lLdf~L~V~~-ee~~ 178 (293)
T 2pmi_B 149 -----GV---------RCHELNILENDFLKRVNYRIIPRD-HNIT 178 (293)
T ss_dssp -----TS---------CHHHHHHHHHHHHHTTTTCCSCCT-THHH
T ss_pred -----Cc---------CHHHHHHHHHHHHHHcCCceeeCH-HHHH
Confidence 11 246789999999999999998875 3444
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.15 E-value=0.0012 Score=63.81 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHH
Q 007493 65 CTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVS 131 (601)
Q Consensus 65 v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs 131 (601)
..+|..++..|+++..+..+|..++...+...-+..+.+..||+||||+||+..+.+++.++|..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 6889999999999999999999999999887778899999999999999999999999998887654
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.0037 Score=65.61 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHH
Q 007493 65 CTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVS 131 (601)
Q Consensus 65 v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs 131 (601)
..||..+|..|+|+..+..+|..|+.+.....-+..+.+..||+|||||||.+....++.++|..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4788899999999999999999999998877777889999999999999999988777777776654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.33 E-value=0.085 Score=55.38 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=73.6
Q ss_pred ccCcHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHH
Q 007493 177 VHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPR 256 (601)
Q Consensus 177 v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~e 256 (601)
....+..|..++..|+++. .+...|..+...++...++-..+...||+||||+|++..+.+..- ......++++..
T Consensus 126 L~~a~~~I~~~~~~L~Lp~-~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl---~eI~~~~~v~~k 201 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPK-IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF---KEIQSLIHVKTK 201 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH---HHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH---HHHHHHhCCCHH
Confidence 3456778889999999975 688999999999888777888999999999999999999986443 235667789999
Q ss_pred HHHHHHHHHHHHHhc
Q 007493 257 QLEEVSNQMLELYEQ 271 (601)
Q Consensus 257 eL~ei~~eILeLY~~ 271 (601)
+|..++..|...+..
T Consensus 202 eigr~~k~l~~~L~l 216 (345)
T 4bbr_M 202 EFGKTLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999888776553
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.25 E-value=0.19 Score=49.34 Aligned_cols=91 Identities=11% Similarity=0.193 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccc-cchHHHHHHHHHHHHHHcCCCCCCCCc-----cccccccCCC
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQ-FKPHHIAAGAIFLAAKFLKVKLPSDGD-----KVWWQEFDVT 254 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~-y~Ps~IAaAAIyLA~~~l~i~lP~~~~-----~~W~~~fdvt 254 (601)
..+|......|++.. .+..+|..++...+....+.. +.+..||+||||+|+++-..+.+.... ..|-..+.++
T Consensus 32 ~~~i~~v~~~l~L~~-~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~ 110 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ-RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLS 110 (235)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCC
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhcc
Confidence 456788888888875 577888888888887777778 999999999999999999865432110 0122234678
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 007493 255 PRQLEEVSNQMLELYEQN 272 (601)
Q Consensus 255 ~eeL~ei~~eILeLY~~~ 272 (601)
.++|..+-..|+....-.
T Consensus 111 ~~~I~~~E~~iL~~L~f~ 128 (235)
T 1zp2_A 111 RSNISEIEFEIISVLDAF 128 (235)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHCCCc
Confidence 999999988888877644
No 25
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=93.87 E-value=1.1 Score=43.87 Aligned_cols=66 Identities=17% Similarity=0.372 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcC---CCCCCchhHHHHHHHHHhccCCCCCCChHHHH
Q 007493 63 SYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQ---SHAKNDRRTIATVCMFLAGKVEETPRPLKDVI 128 (601)
Q Consensus 63 ~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~---S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi 128 (601)
.+...|+.+.++-++|..++--|+.+.+.|.-.. ...-...+.||+|||.||+---..|+++.++.
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 3556778999999999999999999999998643 23445788999999999998888899988775
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.85 E-value=0.42 Score=48.46 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCcc--------------c
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDK--------------V 246 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~--------------~ 246 (601)
..+|......|++.. .+..+|..++...+....+-.+.+..||+||||+|+++-....|..... .
T Consensus 47 ~~~I~~v~~~l~L~~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQ-QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccccc
Confidence 356777777888875 5778888999988877788899999999999999999998866531000 0
Q ss_pred cccccCCCHHHHHHHHHHHHHHHhcCC
Q 007493 247 WWQEFDVTPRQLEEVSNQMLELYEQNR 273 (601)
Q Consensus 247 W~~~fdvt~eeL~ei~~eILeLY~~~~ 273 (601)
+-..+.++.++|..+-..||....-.-
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~~L~f~l 152 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLELMDCCL 152 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHTTTCC
T ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCe
Confidence 122334678888888888888766443
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=92.57 E-value=0.45 Score=47.70 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHH
Q 007493 182 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEV 261 (601)
Q Consensus 182 ~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei 261 (601)
++|......+++.. ....+|..+++..+....+-...+..||+||||+|+++-....|.-.+-.......++.++|..+
T Consensus 43 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ-ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 46677777777764 56688888888887666677888999999999999999887544321111111224789999999
Q ss_pred HHHHHHHHhcCCC
Q 007493 262 SNQMLELYEQNRV 274 (601)
Q Consensus 262 ~~eILeLY~~~~~ 274 (601)
-..|+....-.-.
T Consensus 122 E~~IL~~L~f~l~ 134 (269)
T 2b9r_A 122 EMKILRALNFGLG 134 (269)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHHcCCccC
Confidence 9999998775443
No 28
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=91.98 E-value=0.82 Score=47.25 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCC------
Q 007493 182 KPLVEAIKKFK--VAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDV------ 253 (601)
Q Consensus 182 ~fL~~fl~~L~--~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdv------ 253 (601)
.+|..++..|+ +.. .+..+|..++...+....+..+.|..||+||||+|+++-.++.+.. .....+..
T Consensus 62 ~~I~ev~~~l~~~Lp~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~---d~v~~~~~~p~~~~ 137 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPR-SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP---QFVGNLRESPLGQE 137 (323)
T ss_dssp HHHHHHHHHCTTTCCH-HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHH---HHGGGSSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHH---HHHHHhccChhhhH
Confidence 45677777888 765 5778899999999888888899999999999999999998854321 12222222
Q ss_pred -CHHHHHHHHHHHHHHHhcCCC
Q 007493 254 -TPRQLEEVSNQMLELYEQNRV 274 (601)
Q Consensus 254 -t~eeL~ei~~eILeLY~~~~~ 274 (601)
+.++|..+-..||....-.-.
T Consensus 138 ~~~~~Il~~E~~iL~~L~f~l~ 159 (323)
T 1jkw_A 138 KALEQILEYELLLIQQLNFHLI 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEE
Confidence 246777777777776664433
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=91.75 E-value=0.61 Score=46.25 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHH
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEE 260 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~e 260 (601)
.++|......+++.. ....+|..+++..+....+-......||+||+|+|+++-....|.-..-.......++.++|..
T Consensus 56 vdwl~~v~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 134 (254)
T 2f2c_A 56 LTWMHLLCESFELDK-SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELIN 134 (254)
T ss_dssp HHHHHHHHHHTTCCT-THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHH
T ss_pred HHHHHHHHHHHCCCc-hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHH
Confidence 345666666677765 4668888888888876667788899999999999999987644431111111122478999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 007493 261 VSNQMLELYEQNRVPQ 276 (601)
Q Consensus 261 i~~eILeLY~~~~~~~ 276 (601)
+-..||....-.-..+
T Consensus 135 mE~~IL~~L~~~l~~~ 150 (254)
T 2f2c_A 135 QEKDILEALKWDTEAV 150 (254)
T ss_dssp HHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHCCCcCCCC
Confidence 9999999887554443
No 30
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=91.30 E-value=0.72 Score=47.34 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHH
Q 007493 182 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEV 261 (601)
Q Consensus 182 ~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei 261 (601)
.||......+++.. .+..+|..++...+....+-.+.+..||++|+|+|+++-....|.-..-.......++.++|..+
T Consensus 76 dwl~ev~~~~~l~~-~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~m 154 (306)
T 3g33_B 76 YWMLEVCEEQRCEE-EVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCcH-hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHH
Confidence 45555566667665 46677888888877666677888999999999999999776544322111122225889999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 007493 262 SNQMLELYEQNRVPQS 277 (601)
Q Consensus 262 ~~eILeLY~~~~~~~~ 277 (601)
-..||....-.-..+.
T Consensus 155 E~~IL~~L~f~l~~~t 170 (306)
T 3g33_B 155 EVLVLGKLKWDLAAVI 170 (306)
T ss_dssp HHHHHHHTTTCCCCCC
T ss_pred HHHHHHHcCCccCCCC
Confidence 9999998886555444
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=91.17 E-value=0.59 Score=46.44 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHH
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEE 260 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~e 260 (601)
.++|......+++.. ....+|..++...+....+-......||+||+|+|+++-....|.-..-.......++.++|..
T Consensus 55 vdwl~ev~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEP-NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCc-cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHH
Confidence 345666667777765 5668888888888776666777889999999999999987654432111111122488999999
Q ss_pred HHHHHHHHHhcCCC
Q 007493 261 VSNQMLELYEQNRV 274 (601)
Q Consensus 261 i~~eILeLY~~~~~ 274 (601)
+-..||....-.-.
T Consensus 134 mE~~iL~~L~~~l~ 147 (257)
T 1g3n_C 134 QEKELLEKLAWRTE 147 (257)
T ss_dssp HHHHHHHHTTTCCC
T ss_pred HHHHHHHHCCCcCC
Confidence 99999988775443
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=90.64 E-value=0.62 Score=46.36 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCcccccccc--CCCHHHHH
Q 007493 182 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF--DVTPRQLE 259 (601)
Q Consensus 182 ~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~f--dvt~eeL~ 259 (601)
+||......+++.. ....+|..+++..+....+-......||+||||+|+++-....|.-. .+.... .++.++|.
T Consensus 44 dwl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~--d~~~i~~~~~~~~~i~ 120 (260)
T 2cch_B 44 DWLVEVGEEYKLQN-ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA--EFVYITDDTYTKKQVL 120 (260)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHH--HHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHH--HHHHHHcCCcCHHHHH
Confidence 45566666666664 45567777777766555555677889999999999999987544321 122222 48899999
Q ss_pred HHHHHHHHHHhcCC
Q 007493 260 EVSNQMLELYEQNR 273 (601)
Q Consensus 260 ei~~eILeLY~~~~ 273 (601)
.+-..||....-.-
T Consensus 121 ~mE~~iL~~L~~~l 134 (260)
T 2cch_B 121 RMEHLVLKVLTFDL 134 (260)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCCcc
Confidence 99999998876543
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=90.54 E-value=0.86 Score=45.58 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHH
Q 007493 182 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEV 261 (601)
Q Consensus 182 ~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei 261 (601)
.+|......+++.. ....+|..+++..+....+....+..||+||+|+|+++-....|.-..-.......++.++|..+
T Consensus 62 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~m 140 (271)
T 2w96_A 62 TWMLEVCEEQKCEE-EVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQM 140 (271)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHCCch-hHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHH
Confidence 34555555666654 45678888888877666667788999999999999999887323211111111224789999999
Q ss_pred HHHHHHHHhcCCCC
Q 007493 262 SNQMLELYEQNRVP 275 (601)
Q Consensus 262 ~~eILeLY~~~~~~ 275 (601)
-..||....-.-..
T Consensus 141 E~~IL~~L~~~l~~ 154 (271)
T 2w96_A 141 ELLLVNKLKWNLAA 154 (271)
T ss_dssp HHHHHHHTTTCCCC
T ss_pred HHHHHHHCCCccCC
Confidence 99999988754443
No 34
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.24 E-value=0.29 Score=48.44 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCcH----HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhccCCCC
Q 007493 65 CTFLQDLGMRLKVPQ----VTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET 120 (601)
Q Consensus 65 v~~I~ev~~~LkLp~----~TiaTAi~yf~RFy~~~S~~~~dl~lVAaACLfLA~KvEE~ 120 (601)
..||..++..|+++. .+...|..++...+....+..+.+..||+||||+|++.-+.
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCC
Confidence 578889999999886 57888999999888877788899999999999999997553
No 35
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.74 E-value=0.75 Score=45.51 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCC
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVK 238 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~ 238 (601)
..+|......|++.. .+..+|..++...+....+-.+.+..||+||||+|+++-..+
T Consensus 35 ~~~i~~v~~~l~l~~-~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p 91 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQ-LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQA 91 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCC
Confidence 467788888888875 577889999998887777889999999999999999998873
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.61 E-value=1.2 Score=45.10 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcc-ccccccchHHHHHHHHHHHHHHcCCCCCCCCcccccccc--CCCHHHH
Q 007493 182 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRT-SLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF--DVTPRQL 258 (601)
Q Consensus 182 ~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t-~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~f--dvt~eeL 258 (601)
++|......+++.. ....+|..+++..+.. ...-......||+||+|+|+++-....|.-. .+.... .++.++|
T Consensus 55 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~--~~~~i~~~~~~~~ei 131 (283)
T 1w98_B 55 DWLMEVCEVYKLHR-ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH--QFAYVTDGACSGDEI 131 (283)
T ss_dssp HHHHHHHHHTTCBH-HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH--HHHHTTTTSSCHHHH
T ss_pred HHHHHHHHHhCCCc-cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHH--HHHHHHcCCCCHHHH
Confidence 45566666677654 4667888888877754 3556788999999999999999887544311 122222 4789999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 007493 259 EEVSNQMLELYEQNRVP 275 (601)
Q Consensus 259 ~ei~~eILeLY~~~~~~ 275 (601)
..+-..||....-.-..
T Consensus 132 ~~mE~~IL~~L~~~l~~ 148 (283)
T 1w98_B 132 LTMELMIMKALKWRLSP 148 (283)
T ss_dssp HHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHcCCcCCC
Confidence 99999999888755433
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=88.30 E-value=0.75 Score=48.32 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCC
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVK 238 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~ 238 (601)
..+|......|++.. .+..+|..++...+....+..+.+..||+||||||+++-..+
T Consensus 42 v~wI~ev~~~l~L~~-~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQ-LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHTTTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 456777777888875 577889999998887777889999999999999999998873
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=86.71 E-value=1.8 Score=43.27 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=65.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHHH
Q 007493 182 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEV 261 (601)
Q Consensus 182 ~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~ei 261 (601)
++|......+++.. +...+|.++++..+....+-......||++|+++|+++-....|.-..-.+.....++.++|..+
T Consensus 54 dWl~ev~~~~~l~~-eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 54 TWMFCVCKDLRQDN-NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 44555556666664 46678888888777555556777889999999999999887544321112223336899999999
Q ss_pred HHHHHHHHhcCCCCC
Q 007493 262 SNQMLELYEQNRVPQ 276 (601)
Q Consensus 262 ~~eILeLY~~~~~~~ 276 (601)
-..||....-.-..+
T Consensus 133 E~~IL~~L~w~l~~p 147 (252)
T 1f5q_B 133 EVKSLDTLSWVADRC 147 (252)
T ss_dssp HHHHHHHTTTCCCCC
T ss_pred HHHHHHHCCCccCCC
Confidence 999999887554443
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=82.49 E-value=1.6 Score=37.63 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcCC-----CCCCchhHHHHHHHHHhccCCCCCCChHHHH
Q 007493 68 LQDLGMRLKVPQVTIATAIIFCHRFFIRQS-----HAKNDRRTIATVCMFLAGKVEETPRPLKDVI 128 (601)
Q Consensus 68 I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S-----~~~~dl~lVAaACLfLA~KvEE~prkL~dIi 128 (601)
|.++|..|+++. ++..|-.++.+|=..-+ -.+...-.+++||+|.|||.....+.=..++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~ 70 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMV 70 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHH
Confidence 678999999997 66777799999974321 1244456788999999999887655444444
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=75.81 E-value=10 Score=32.59 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhcc-----ccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHHHHH
Q 007493 186 EAIKKFKVAQNALAQVAWNFVNDGLRT-----SLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEE 260 (601)
Q Consensus 186 ~fl~~L~~~~~~L~qlA~~~LnDsl~t-----~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~eeL~e 260 (601)
.++-.|+... +...|..++..--.. ...+.++-..-++||+|.|++.++++++. .......++.+.++..
T Consensus 8 dLcVqfgc~e--~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK---~KL~~~s~lk~~~f~~ 82 (95)
T 3m03_A 8 DLAVQFSCIE--AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDK---NKMVATSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHTCGG--GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCH---HHHHHTTCBCHHHHHH
T ss_pred HHHHHhCCHH--HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCH---HHHHHHHCCCHHHHHH
Confidence 3444445432 445555555432211 13456777788999999999999998764 2344555899999999
Q ss_pred HHHHHHHHHhc
Q 007493 261 VSNQMLELYEQ 271 (601)
Q Consensus 261 i~~eILeLY~~ 271 (601)
++.+|..+-.+
T Consensus 83 l~~~~e~~~~~ 93 (95)
T 3m03_A 83 LCKQLEKIGQQ 93 (95)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=70.49 E-value=20 Score=37.61 Aligned_cols=83 Identities=11% Similarity=0.154 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhCCcccccC--------c----HHH---------------HHHHHHHhccchHHHHHHHHHHHHH
Q 007493 156 QKELILLGERVVLATLGFDLNVHH--------P----YKP---------------LVEAIKKFKVAQNALAQVAWNFVND 208 (601)
Q Consensus 156 ~ke~Il~~E~~IL~tL~FDL~v~~--------P----~~f---------------L~~fl~~L~~~~~~L~qlA~~~LnD 208 (601)
.++.+-.+|..||..|-|.-.-+. + ... |..+|..|.....++...+|.++..
T Consensus 167 lvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~ 246 (347)
T 2r7g_A 167 MIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQH 246 (347)
T ss_dssp HHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 567888999999999999765421 1 112 2222333433333577789998888
Q ss_pred Hh--ccccccccchHHHHHHHHHHHHHHcCCC
Q 007493 209 GL--RTSLCLQFKPHHIAAGAIFLAAKFLKVK 238 (601)
Q Consensus 209 sl--~t~l~L~y~Ps~IAaAAIyLA~~~l~i~ 238 (601)
++ .+.++....-.+|-++|||..+++.+..
T Consensus 247 ~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 278 (347)
T 2r7g_A 247 TLQNEYELMRDRHLDQIMMCSMYGICKVKNID 278 (347)
T ss_dssp HHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhChHhhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 87 4678888899999999999999998864
No 42
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=67.89 E-value=13 Score=39.93 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHhhc--CCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHH
Q 007493 64 YCTFLQDLGMRLKVPQ-VTIATAIIFCHRFFIR--QSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIV 130 (601)
Q Consensus 64 ~v~~I~ev~~~LkLp~-~TiaTAi~yf~RFy~~--~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~V 130 (601)
+..=|.++|.+|.++. .....-.++|+..+.. .-+...++.-|.++|+|.-||+.....+.++|+..
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~ 351 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 351 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 3455889999998765 3444444555555543 34678889999999999999999888999999874
No 43
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=66.70 E-value=9.9 Score=39.16 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=46.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcC---CCCCCchhHHHHHHHHHhcc-CCCCCCChHHHHHHH
Q 007493 68 LQDLGMRLKVPQVTIATAIIFCHRFFIRQ---SHAKNDRRTIATVCMFLAGK-VEETPRPLKDVIIVS 131 (601)
Q Consensus 68 I~ev~~~LkLp~~TiaTAi~yf~RFy~~~---S~~~~dl~lVAaACLfLA~K-vEE~prkL~dIi~Vs 131 (601)
..++|..|+++..|...|..+|++.-..- +-...+......||||+||. ++....+|..++..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 35789999999999999999999976641 12233455666777999997 455678888887654
No 44
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=66.39 E-value=13 Score=39.09 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHhhc--CCCCCCchhHHHHHHHHHhccCCCCCCChHHHH
Q 007493 55 KKETYLRKS---YCTFLQDLGMRLKVPQ-VTIATAIIFCHRFFIR--QSHAKNDRRTIATVCMFLAGKVEETPRPLKDVI 128 (601)
Q Consensus 55 e~E~~lR~~---~v~~I~ev~~~LkLp~-~TiaTAi~yf~RFy~~--~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi 128 (601)
..-.-+|+. +..=|.++|.+|.++. .+.....++|...+.. .-+...++.-|.++|+|.-||+.....+.++|+
T Consensus 206 sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii 285 (347)
T 2r7g_A 206 SLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIV 285 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 333445543 2345899999998765 4555566666666643 346788899999999999999998888999998
Q ss_pred HH
Q 007493 129 IV 130 (601)
Q Consensus 129 ~V 130 (601)
..
T Consensus 286 ~~ 287 (347)
T 2r7g_A 286 TA 287 (347)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=55.32 E-value=32 Score=39.06 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHhhc--CCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHH
Q 007493 64 YCTFLQDLGMRLKVPQ-VTIATAIIFCHRFFIR--QSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIV 130 (601)
Q Consensus 64 ~v~~I~ev~~~LkLp~-~TiaTAi~yf~RFy~~--~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~V 130 (601)
+..=|..+|.+|.++. .+.....++|+..+.. .-+...++.-|+++|+|.-||+.....+.++|+..
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~ 596 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 596 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 3456899999998774 4555666677766643 34678899999999999999999988999999875
No 46
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=48.69 E-value=50 Score=33.81 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhc-cc-cc-cccchHHHHHHHHHHHHHHcCCCCCCCCccccccccCCCHHH
Q 007493 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLR-TS-LC-LQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQ 257 (601)
Q Consensus 181 ~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~-t~-l~-L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fdvt~ee 257 (601)
+.||.++++...+.. .+.-.|..++..... .+ +. -....+-|-++||.+|.+++.=.... ...|.+..|++..+
T Consensus 78 ~~Yl~RI~k~t~ls~-~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ys--N~~wAkVgGisl~E 154 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEH-CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFST--NAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCC--HHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccC--hhHhhhccCcCHHH
Confidence 677777777666653 454555555554443 12 22 25678899999999999999754332 24577777999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 007493 258 LEEVSNQMLELYEQNR 273 (601)
Q Consensus 258 L~ei~~eILeLY~~~~ 273 (601)
|..+-.++|.+..-+-
T Consensus 155 LN~LE~eFL~lLdf~L 170 (293)
T 2pmi_B 155 LNILENDFLKRVNYRI 170 (293)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHcCCce
Confidence 9999999998876543
No 47
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=42.83 E-value=51 Score=35.29 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=39.2
Q ss_pred HHHhccchHHHHHHHHHHHHHHh--ccccccccchHHHHHHHHHHHHHHcCCC
Q 007493 188 IKKFKVAQNALAQVAWNFVNDGL--RTSLCLQFKPHHIAAGAIFLAAKFLKVK 238 (601)
Q Consensus 188 l~~L~~~~~~L~qlA~~~LnDsl--~t~l~L~y~Ps~IAaAAIyLA~~~l~i~ 238 (601)
|..|.....++....|.++.-++ .+.++....-.+|.++|||.-+++.+..
T Consensus 290 C~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~ 342 (411)
T 4ell_A 290 CERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 342 (411)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCC
Confidence 33344433357778999888876 5678888889999999999999988764
No 48
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=39.68 E-value=50 Score=37.46 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=44.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhc-----CCCCCCchhHHHHHHHHHhccCCCCCCChHHHHHHH
Q 007493 68 LQDLGMRLKVPQVTIATAIIFCHRFFIR-----QSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVS 131 (601)
Q Consensus 68 I~ev~~~LkLp~~TiaTAi~yf~RFy~~-----~S~~~~dl~lVAaACLfLA~KvEE~prkL~dIi~Vs 131 (601)
..++|..|++...|..-|...|..-... .++.+.... .++..+|.||.+++...+|..++..+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~-W~aC~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKEL-WGICIFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHH-HHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHH-hhhhhheeeeeccCCeeeHHHHHHHh
Confidence 4578999999999999999999988742 223333333 33334666666888889998888765
No 49
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=22.58 E-value=2.1e+02 Score=30.06 Aligned_cols=100 Identities=9% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHhCCcccccCcHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccccc----ccchHHHHHHHHHHHHHHcCCCCCCCC-
Q 007493 169 ATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCL----QFKPHHIAAGAIFLAAKFLKVKLPSDG- 243 (601)
Q Consensus 169 ~tL~FDL~v~~P~~fL~~fl~~L~~~~~~L~qlA~~~LnDsl~t~l~L----~y~Ps~IAaAAIyLA~~~l~i~lP~~~- 243 (601)
-..|||....+|. ..+.++.+........+.. +..++.+ .|.+..+|-+..+..+.+++.++|..-
T Consensus 254 vsaG~Da~~~DpL-------g~l~Lt~~g~~~~~~~l~~--~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~~~P 324 (376)
T 4a69_A 254 LQCGADSLGCDRL-------GCFNLSIRGHGECVEYVKS--FNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELP 324 (376)
T ss_dssp EECCGGGBTTCSS-------CCCBBCHHHHHHHHHHHHT--TCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCSBCC
T ss_pred EeCcccCCCCCcc-------cCeecCHHHHHHHHHHHHH--cCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccCCCC
Confidence 3557887777774 2355554444433332221 1223222 899999999999999999998766431
Q ss_pred ccccccccC------C----------CHHHHHHHHHHHHHHHhcCCCCCC
Q 007493 244 DKVWWQEFD------V----------TPRQLEEVSNQMLELYEQNRVPQS 277 (601)
Q Consensus 244 ~~~W~~~fd------v----------t~eeL~ei~~eILeLY~~~~~~~~ 277 (601)
...|++.|+ + +.+-|+.+...|++-.......|+
T Consensus 325 ~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~ 374 (376)
T 4a69_A 325 YSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPS 374 (376)
T ss_dssp CCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC----
T ss_pred CchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 236877662 1 478899999999998886554443
Done!