BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007496
(601 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/533 (44%), Positives = 340/533 (63%), Gaps = 26/533 (4%)
Query: 20 ASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMD 79
+SIG+LLK G VT +KIDPY+N DAGTM+P+ H +YERFMD
Sbjct: 22 VASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTEDGAETDLDLGHYERFMD 81
Query: 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGP 139
+ +T+ NNIT GK+Y VI KER+G YLG+TVQ++PH+TD+I+D MI K
Sbjct: 82 VNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKD------MIRYASKINN 135
Query: 140 VDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQH 199
++ ++E+GGT+GDIES+PF+EA+ Q G N +H++LV L+V GE KTKP QH
Sbjct: 136 AEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQH 195
Query: 200 SVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 259
SV+ LR G+ P+ + R+T+ LDD + K++ F +V +I++ YDV + +P++L
Sbjct: 196 SVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILES 255
Query: 260 QKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLH--EPVRIAMVGKYTGLSDAYLSIL 317
QK I L L+ ++ L +W S G++ + + IA+VGKYT L D+Y+SI
Sbjct: 256 QKLVSKILSRLKLED--RQVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIK 313
Query: 318 KALLHAS--VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375
+A+ HAS + +R KL+ WI + DLE T+ N ++L +GI+V GFG+R
Sbjct: 314 EAIYHASAYIGVRPKLI--WIESTDLESDTKNLN--------EILGNVNGIIVLPGFGSR 363
Query: 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM 435
G +GKI A KYAREH IP+LGIC G Q++++EFAR VL L +ANSTE +PNTK+P + +
Sbjct: 364 GAEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLL 423
Query: 436 PEGSK-THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENA 494
E T +GGTMRLG+++ + + + +LYG + + ERHRHRYEVNP + LE+A
Sbjct: 424 DEQKNVTQLGGTMRLGAQKIILK-EGTIAYQLYGKKV-VYERHRHRYEVNPKYVDILEDA 481
Query: 495 GLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAAC 547
GL +G E +EI+ELP++ +F+ Q HPE+KSRP PSP++LG I A
Sbjct: 482 GLVVSGISENG-LVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/535 (45%), Positives = 339/535 (63%), Gaps = 28/535 (5%)
Query: 21 SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDI 80
SS+G LL+A G RVT IKIDPY+N DAGTM P+EH +YERF+D+
Sbjct: 32 SSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91
Query: 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPV 140
L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDEI++ I +VA +E
Sbjct: 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKA 145
Query: 141 DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHS 200
++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H++LVP L E KTKPTQHS
Sbjct: 146 EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHS 205
Query: 201 VRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQ 260
V LRG G+ P+IL RS + + V+ K++ F +V ++ + V +++ +PLLL +Q
Sbjct: 206 VATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ 265
Query: 261 KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320
A+ + L L+ P L W + V+IA+ GKY + DAYLS+L+AL
Sbjct: 266 GLGRAVERALGLEAVI--PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323
Query: 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGK 380
HA + R ++ + W+ A LE A +E + GILVPGGFG RG++GK
Sbjct: 324 RHAGIKNRARVEVKWVDAESLEAADLEEA----------FRDVSGILVPGGFGVRGIEGK 373
Query: 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 440
+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+ ANSTEFDP+T +P + MPE +
Sbjct: 374 VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE 433
Query: 441 TH-MGGTMRLGSRRTYFQIK-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSF 498
+GGTMRLG +IK +LYG + ERHRHRYEVNP + LE AGL
Sbjct: 434 VEGLGGTMRLGD--WPMRIKPGTLLHRLYGKEEVL-ERHRHRYEVNPLYVDGLERAGLVV 490
Query: 499 TG-----KDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 548
+ + + +E +EL +HP+F+G+Q HPE+KSRP +PSP F+G + AA
Sbjct: 491 SATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALA 545
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/535 (45%), Positives = 338/535 (63%), Gaps = 28/535 (5%)
Query: 21 SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDI 80
SS+G LL+A G RVT IKIDPY+N DAGTM P+EH +YERF+D+
Sbjct: 32 SSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91
Query: 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPV 140
L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDEI++ I +VA +E
Sbjct: 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKA 145
Query: 141 DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHS 200
++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H++LVP L E KTKPTQHS
Sbjct: 146 EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHS 205
Query: 201 VRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQ 260
V LRG G+ P+IL RS + + V+ K++ F +V ++ + V +++ +PLLL +Q
Sbjct: 206 VATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ 265
Query: 261 KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320
A+ + L L+ P L W + V+IA+ GKY + DAYLS+L+AL
Sbjct: 266 GLGRAVERALGLEAVI--PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323
Query: 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGK 380
HA + R ++ + W+ A LE A E + GILVPGGFG RG++GK
Sbjct: 324 RHAGIKNRARVEVKWVDAESLEAADLDEA----------FRDVSGILVPGGFGVRGIEGK 373
Query: 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 440
+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+ ANSTEFDP+T +P + MPE +
Sbjct: 374 VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE 433
Query: 441 TH-MGGTMRLGSRRTYFQIK-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSF 498
+GGTMRLG +IK +LYG + ERHRHRYEVNP + LE AGL
Sbjct: 434 VEGLGGTMRLGD--WPMRIKPGTLLHRLYGKEEVL-ERHRHRYEVNPLYVDGLERAGLVV 490
Query: 499 TG-----KDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 548
+ + + +E +EL +HP+F+G+Q HPE+KSRP +PSP F+G + AA
Sbjct: 491 SATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALA 545
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/528 (45%), Positives = 328/528 (62%), Gaps = 36/528 (6%)
Query: 31 GLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITT 90
GL VT +K+DPY+N D GTMSP +H +YERF+ K++R NN TT
Sbjct: 33 GLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTT 92
Query: 91 GKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGT 150
G+IY V+ KER+GDYLG TVQV+PHIT+ I+ ERV ++G EG DV ++E+GGT
Sbjct: 93 GRIYSDVLRKERRGDYLGATVQVIPHITNAIK---ERV----LEGGEGH-DVVLVEIGGT 144
Query: 151 IGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLT 210
+GDIES+PF+EA+ Q + +G + +H++LVP + GE KTKPTQHSV+ L G+
Sbjct: 145 VGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQ 204
Query: 211 PNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVL 270
P+IL CRS A+ N + K++ FC+VPE+ +I+L DV +I+ IP LL+ Q + I K
Sbjct: 205 PDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRF 264
Query: 271 NLQGTTKEPLLKEWTSRA-EICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329
+L E L EW E + + E V I MVGKY L DAY S+++AL H + R
Sbjct: 265 SL--NCPEANLSEWEQVIFEEANPVSE-VTIGMVGKYIELPDAYKSVIEALKHGGLKNRV 321
Query: 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389
+ I I + D+E ++LKG D ILVPGGFG RGV+G I A++ARE
Sbjct: 322 SVNIKLIDSQDVE-----------TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARE 370
Query: 390 HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-----------G 438
+ IPYLGICLGMQVA+I++AR V N+ +ANSTEF P+ K P V + E
Sbjct: 371 NNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRS 430
Query: 439 SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSF 498
K+ +GGTMRLG+++ + D +LY T + ERHRHRYEVN ++ ++E+AGL
Sbjct: 431 EKSDLGGTMRLGAQQCQL-VDDSLVRQLYNAPTIV-ERHRHRYEVNNMLLKQIEDAGLRV 488
Query: 499 TGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAA 546
G+ Q +EI+E+PNHP+F+ QFHPE+ S P PLF G + AA
Sbjct: 489 AGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA 536
>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
Length = 295
Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/253 (59%), Positives = 186/253 (73%)
Query: 20 ASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMD 79
ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EH NYERF+D
Sbjct: 42 ASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLD 101
Query: 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGP 139
I+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD IQ+W+ R A+IPVD
Sbjct: 102 IRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLE 161
Query: 140 VDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQH 199
VCVIELGGT+GDIESMPFIEA QF ++V NFC IHVSLVP + GEQKTKPTQ+
Sbjct: 162 PQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQN 221
Query: 200 SVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 259
SVR LRG GL+P+++ CR + LD +VK K+S FCHV + +I ++DV +I+ +PLLL +
Sbjct: 222 SVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEE 281
Query: 260 QKAHEAIFKVLNL 272
Q + + L+L
Sbjct: 282 QGVVDYFLRRLDL 294
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 305 bits (780), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/256 (57%), Positives = 187/256 (73%)
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ADGILVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+DA+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDAD 147
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHRH
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 207
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 539
R+EVNP++I + E LSF G+D RMEI+EL NHPYF+GVQFHPE+ SRP KPSP +
Sbjct: 208 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPY 267
Query: 540 LGLIAAACGQLDTLIQ 555
LGL+ AA G L+ +Q
Sbjct: 268 LGLLLAATGNLNAYLQ 283
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 142/241 (58%), Positives = 178/241 (73%)
Query: 20 ASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMD 79
ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EH NYERF+D
Sbjct: 20 ASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLDLGNYERFLD 79
Query: 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGP 139
I L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD +Q+W+ A +PVDG +
Sbjct: 80 INLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVMNQAKVPVDGNKEE 139
Query: 140 VDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQH 199
+CVIELGGTIGDIE MPF+EA QF ++ NFC IHVSLVP L+ GEQKTKPTQ+
Sbjct: 140 PQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQN 199
Query: 200 SVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 259
SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV + +I ++DV + + +P+LL +
Sbjct: 200 SVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEE 259
Query: 260 Q 260
Q
Sbjct: 260 Q 260
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 186/256 (72%)
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ADGILVPGGFG RG GK+ A +AR +IP+LG+ LGMQ+AVIEFAR+ LNL+DA+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDAD 147
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHRH
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 207
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 539
R+EVNP++I + E LSF G+D RMEI+EL NHPYF+GVQFHPE+ SRP KPSP +
Sbjct: 208 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPY 267
Query: 540 LGLIAAACGQLDTLIQ 555
LGL+ AA G L+ +Q
Sbjct: 268 LGLLLAATGNLNAYLQ 283
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 145/254 (57%), Gaps = 13/254 (5%)
Query: 298 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 356
VRIA VGKY D Y S+L+ H + L+ +L I ++ D+ E E P+A A
Sbjct: 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYV------DSEELEGPNA-DEA 61
Query: 357 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416
K L G DGI VPGGFGNRGV GK AA+ AR + IPY G+ LGMQVAVIE +R+V+
Sbjct: 62 RKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWS 121
Query: 417 DANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 476
DANS EF+ + + V M + + MG M LG+ Y K AK+Y + ER
Sbjct: 122 DANSEEFNKESTHQVVRIM-DCDRNKMGANMHLGACDVYIVEKSSIMAKIYSKSNIVVER 180
Query: 477 HRHRYEVNPDMIARLENAGLSFTGKDE----TSQRMEIVELPNHPYFIGVQFHPEYKSRP 532
HRHRYEVN L AGL + + + R+E VE P+ +F+ VQFHPE+ S P
Sbjct: 181 HRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTP 240
Query: 533 GKPSPLFLGLIAAA 546
P+P +L +AAA
Sbjct: 241 MDPAPTYLSFMAAA 254
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 360 LKGADGILVPGGFGNRGVQGKILAA--KYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416
L G DG+++ GG N + L + KY +H P LGIC+G Q + F SV+ +
Sbjct: 52 LDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAK 110
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 431 CVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIAR 490
VI MP G + +R R + + L R I+ ++V I
Sbjct: 129 LVIDMPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKV----IGV 184
Query: 491 LENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL----FLGLIAAA 546
+EN L D+ ++ E PY +G+ F+P+ ++ G L F G +
Sbjct: 185 VENMKLRSEQLDDEKDVEKLAEEFGVPYLVGIPFYPDLDAKVGNVEELMKTEFAGKVREL 244
Query: 547 CGQL 550
G+L
Sbjct: 245 AGRL 248
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 365 GILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEF 423
GI++ GG + + A +Y E +P G+C GMQ ++ V +N EF
Sbjct: 53 GIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHV---EASNEREF 108
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 374 NRGVQGKILAAKYAREHRIPYLGICLGMQ---VAVIEFARSV-LNLRDANSTEFDPNTKN 429
NRG + I + E P +GIC+G+Q +E +S LN D + FD + K
Sbjct: 65 NRGFEKPI---REYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKP 121
Query: 430 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIA 489
+PE +G + S +F + Y F+ H +N +
Sbjct: 122 -----VPE-----IGWNSCIPSENLFFGLDP------YKRYYFV---HSFAAILNSEKKK 162
Query: 490 RLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 533
LEN G S+ E + N QFHPE + G
Sbjct: 163 NLENDGWKIAKAKYGSE--EFIAAVNKNNIFATQFHPEKSGKAG 204
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 339 CDLEDATEKE-NPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397
CD+++ T ++ NP GI++ GG + + A + E P LGI
Sbjct: 42 CDIDEETIRDFNPH-------------GIILSGGPETVTLSHTLRAPAFIFEIGCPVLGI 88
Query: 398 CLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434
C GMQ + V A NP +F
Sbjct: 89 CYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLF 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,890,667
Number of Sequences: 62578
Number of extensions: 777963
Number of successful extensions: 1986
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 17
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)