Query 007496
Match_columns 601
No_of_seqs 501 out of 2916
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 11:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2387 CTP synthase (UTP-ammo 100.0 4E-219 8E-224 1690.5 43.2 559 1-559 1-560 (585)
2 COG0504 PyrG CTP synthase (UTP 100.0 2E-211 4E-216 1662.3 47.0 529 1-551 1-531 (533)
3 PLN02327 CTP synthase 100.0 5E-208 1E-212 1681.8 51.4 555 1-556 1-556 (557)
4 PRK05380 pyrG CTP synthetase; 100.0 9E-197 2E-201 1591.4 50.5 528 1-550 2-530 (533)
5 TIGR00337 PyrG CTP synthase. C 100.0 2E-195 5E-200 1580.6 50.3 524 1-545 1-525 (525)
6 PF06418 CTP_synth_N: CTP synt 100.0 2E-140 4E-145 1055.4 16.6 276 1-284 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 8E-132 2E-136 986.5 23.0 255 2-262 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 4.4E-64 9.4E-69 501.7 24.0 228 297-548 1-228 (229)
9 cd01746 GATase1_CTP_Synthase T 100.0 1.4E-46 3E-51 379.3 22.9 234 298-543 1-235 (235)
10 COG0505 CarA Carbamoylphosphat 100.0 4.7E-47 1E-51 393.4 15.2 280 202-550 67-366 (368)
11 PRK12564 carbamoyl phosphate s 100.0 1.2E-40 2.7E-45 354.1 17.5 273 203-545 69-359 (360)
12 TIGR01368 CPSaseIIsmall carbam 100.0 1.8E-40 3.8E-45 352.5 17.9 276 202-547 64-357 (358)
13 PRK12838 carbamoyl phosphate s 100.0 1.3E-39 2.9E-44 345.3 18.9 274 203-548 67-352 (354)
14 CHL00197 carA carbamoyl-phosph 100.0 3.3E-38 7.1E-43 337.0 16.3 277 202-549 70-377 (382)
15 PLN02771 carbamoyl-phosphate s 100.0 4.5E-38 9.8E-43 337.2 16.1 267 202-539 120-415 (415)
16 KOG0370 Multifunctional pyrimi 100.0 1.8E-32 4E-37 305.9 16.6 302 177-553 49-359 (1435)
17 PF00117 GATase: Glutamine ami 99.9 1.1E-26 2.5E-31 225.3 15.2 181 314-545 11-192 (192)
18 COG0118 HisH Glutamine amidotr 99.9 7.7E-26 1.7E-30 220.6 17.0 190 298-546 2-203 (204)
19 cd01744 GATase1_CPSase Small c 99.9 2.8E-25 6.1E-30 214.9 18.4 176 300-543 1-178 (178)
20 PLN02335 anthranilate synthase 99.9 8E-25 1.7E-29 219.4 18.8 198 295-550 16-217 (222)
21 PRK08007 para-aminobenzoate sy 99.9 7.1E-25 1.5E-29 214.1 17.4 182 300-544 2-186 (187)
22 TIGR00888 guaA_Nterm GMP synth 99.9 3.4E-24 7.3E-29 208.7 17.9 184 300-548 1-186 (188)
23 PRK05670 anthranilate synthase 99.9 3.8E-24 8.2E-29 208.8 18.2 185 300-546 2-188 (189)
24 COG0512 PabA Anthranilate/para 99.9 3.4E-24 7.3E-29 207.9 16.9 188 298-545 2-190 (191)
25 COG2071 Predicted glutamine am 99.9 2.3E-24 5E-29 215.1 15.5 166 357-549 55-241 (243)
26 PRK06895 putative anthranilate 99.9 1.6E-23 3.4E-28 204.7 19.5 186 298-545 2-188 (190)
27 TIGR00566 trpG_papA glutamine 99.9 1.3E-23 2.8E-28 205.3 18.8 184 300-544 2-187 (188)
28 CHL00101 trpG anthranilate syn 99.9 9.5E-24 2.1E-28 206.5 17.6 186 300-546 2-189 (190)
29 PRK07649 para-aminobenzoate/an 99.9 2.1E-23 4.5E-28 205.3 17.7 187 300-548 2-190 (195)
30 PRK11366 puuD gamma-glutamyl-g 99.9 8.4E-23 1.8E-27 208.7 21.7 168 358-548 57-246 (254)
31 PRK06774 para-aminobenzoate sy 99.9 3.7E-23 8.1E-28 202.1 17.4 183 300-544 2-190 (191)
32 cd01743 GATase1_Anthranilate_S 99.9 4.7E-23 1E-27 199.8 17.8 183 300-543 1-184 (184)
33 PRK00758 GMP synthase subunit 99.9 9.2E-23 2E-27 198.0 18.1 179 300-547 2-182 (184)
34 PRK07765 para-aminobenzoate sy 99.9 1.5E-22 3.3E-27 201.8 19.4 196 298-553 1-198 (214)
35 cd01742 GATase1_GMP_Synthase T 99.9 1.7E-22 3.6E-27 194.8 16.2 180 300-543 1-181 (181)
36 PRK08857 para-aminobenzoate sy 99.9 5.4E-22 1.2E-26 194.5 18.3 185 300-545 2-192 (193)
37 TIGR01823 PabB-fungal aminodeo 99.9 6E-22 1.3E-26 228.4 19.7 199 296-550 4-208 (742)
38 PLN02347 GMP synthetase 99.9 8.5E-22 1.8E-26 219.7 19.4 193 299-555 12-211 (536)
39 PRK05637 anthranilate synthase 99.9 2E-21 4.3E-26 193.2 19.2 199 298-547 2-206 (208)
40 PRK03619 phosphoribosylformylg 99.9 1.2E-21 2.6E-26 196.1 16.9 195 298-544 1-218 (219)
41 PRK13566 anthranilate synthase 99.9 4.1E-21 8.9E-26 220.4 19.7 193 295-547 524-719 (720)
42 TIGR01815 TrpE-clade3 anthrani 99.9 4E-21 8.7E-26 220.2 19.6 193 296-548 515-710 (717)
43 PF07722 Peptidase_C26: Peptid 99.9 3.2E-21 6.9E-26 192.7 13.9 170 315-527 28-217 (217)
44 cd01745 GATase1_2 Subgroup of 99.9 1E-20 2.2E-25 185.0 16.0 148 315-543 23-189 (189)
45 PRK14607 bifunctional glutamin 99.8 1.7E-20 3.6E-25 210.0 18.1 187 300-548 2-191 (534)
46 PRK13170 hisH imidazole glycer 99.8 3.1E-20 6.7E-25 182.8 17.8 185 298-544 1-195 (196)
47 PRK00074 guaA GMP synthase; Re 99.8 1.6E-20 3.5E-25 209.0 16.8 189 299-553 5-196 (511)
48 PRK13146 hisH imidazole glycer 99.8 4.8E-20 1E-24 183.2 17.4 194 298-546 2-208 (209)
49 CHL00188 hisH imidazole glycer 99.8 1.7E-19 3.6E-24 179.7 16.9 191 298-545 2-209 (210)
50 PLN02889 oxo-acid-lyase/anthra 99.8 2.2E-19 4.9E-24 208.6 19.3 196 296-549 80-338 (918)
51 PRK13141 hisH imidazole glycer 99.8 3E-19 6.5E-24 176.3 17.5 196 299-548 1-204 (205)
52 PRK14004 hisH imidazole glycer 99.8 6.7E-19 1.4E-23 175.4 17.7 196 300-545 2-209 (210)
53 PRK09522 bifunctional glutamin 99.8 4.9E-19 1.1E-23 197.7 18.3 187 298-548 2-192 (531)
54 cd01747 GATase1_Glutamyl_Hydro 99.8 3.2E-19 6.9E-24 184.2 15.6 175 315-535 24-221 (273)
55 PRK13181 hisH imidazole glycer 99.8 6.4E-19 1.4E-23 173.4 16.6 178 300-544 2-198 (199)
56 PRK13143 hisH imidazole glycer 99.8 1.7E-18 3.7E-23 170.8 19.3 194 298-546 1-198 (200)
57 cd01748 GATase1_IGP_Synthase T 99.8 9E-19 2E-23 171.9 15.8 186 300-543 1-198 (198)
58 PRK13152 hisH imidazole glycer 99.8 2.8E-18 6.2E-23 169.2 18.1 186 300-544 2-200 (201)
59 cd01741 GATase1_1 Subgroup of 99.8 3.8E-18 8.2E-23 165.6 16.6 139 359-543 43-188 (188)
60 PLN02832 glutamine amidotransf 99.8 3.1E-18 6.8E-23 174.1 16.2 200 298-548 2-216 (248)
61 PRK13527 glutamine amidotransf 99.8 8E-18 1.7E-22 165.8 18.2 191 298-548 1-199 (200)
62 PRK13142 hisH imidazole glycer 99.8 2.1E-18 4.5E-23 169.6 13.6 176 300-544 2-186 (192)
63 PRK09065 glutamine amidotransf 99.8 3.9E-18 8.4E-23 172.7 16.0 140 360-545 52-199 (237)
64 PRK06490 glutamine amidotransf 99.8 1.2E-17 2.6E-22 169.5 19.1 181 296-544 6-191 (239)
65 PRK05665 amidotransferase; Pro 99.8 2.2E-17 4.8E-22 167.6 18.9 132 360-531 55-191 (240)
66 PRK13525 glutamine amidotransf 99.8 1.5E-17 3.3E-22 162.9 16.7 182 298-547 2-188 (189)
67 PRK07053 glutamine amidotransf 99.8 1.7E-17 3.6E-22 167.9 17.0 172 298-531 3-183 (234)
68 TIGR01855 IMP_synth_hisH imida 99.7 2.3E-17 4.9E-22 162.3 15.9 187 300-545 1-196 (196)
69 COG0518 GuaA GMP synthase - Gl 99.7 1.1E-17 2.5E-22 165.2 13.8 181 299-544 3-191 (198)
70 PRK07567 glutamine amidotransf 99.7 3.7E-17 8E-22 166.2 16.6 162 314-531 18-195 (242)
71 PLN02617 imidazole glycerol ph 99.7 9.1E-17 2E-21 179.4 19.7 197 297-550 6-214 (538)
72 TIGR01737 FGAM_synth_I phospho 99.7 1.6E-16 3.4E-21 160.0 18.1 194 298-544 1-225 (227)
73 KOG1224 Para-aminobenzoate (PA 99.7 8.3E-17 1.8E-21 173.5 16.4 196 296-548 13-219 (767)
74 KOG0026 Anthranilate synthase, 99.7 2.9E-16 6.2E-21 148.5 14.0 194 299-549 20-217 (223)
75 TIGR03800 PLP_synth_Pdx2 pyrid 99.7 4.5E-16 9.7E-21 152.1 15.9 177 299-543 1-183 (184)
76 PRK08250 glutamine amidotransf 99.7 2.1E-15 4.5E-20 152.7 16.9 137 360-544 43-192 (235)
77 KOG0623 Glutamine amidotransfe 99.6 1.3E-14 2.8E-19 150.2 11.7 196 300-544 4-206 (541)
78 cd01749 GATase1_PB Glutamine A 99.6 3.9E-14 8.4E-19 138.0 13.0 169 312-543 9-183 (183)
79 PRK13526 glutamine amidotransf 99.4 3E-12 6.4E-17 124.7 14.5 80 298-406 3-87 (179)
80 PRK01077 cobyrinic acid a,c-di 99.4 1.6E-11 3.4E-16 135.4 21.2 89 297-408 245-339 (451)
81 PRK01175 phosphoribosylformylg 99.4 3.5E-11 7.6E-16 123.9 18.7 212 297-546 3-257 (261)
82 PRK05368 homoserine O-succinyl 99.4 2.6E-11 5.6E-16 127.0 17.8 208 296-548 34-253 (302)
83 KOG1622 GMP synthase [Nucleoti 99.3 1.9E-12 4.2E-17 138.3 8.1 149 361-555 58-213 (552)
84 KOG3179 Predicted glutamine sy 99.3 3.7E-12 8E-17 124.4 7.6 137 358-531 55-197 (245)
85 COG0311 PDX2 Predicted glutami 99.3 2.9E-11 6.2E-16 117.0 13.5 82 298-407 1-88 (194)
86 COG0047 PurL Phosphoribosylfor 99.3 3.2E-10 6.9E-15 113.2 20.3 196 297-545 2-229 (231)
87 cd01740 GATase1_FGAR_AT Type 1 99.3 1.4E-10 3E-15 117.7 17.1 178 312-532 11-218 (238)
88 TIGR00379 cobB cobyrinic acid 99.3 4.3E-10 9.4E-15 124.1 22.4 89 297-408 244-338 (449)
89 PRK00784 cobyric acid synthase 99.2 7.1E-10 1.5E-14 123.6 19.6 86 296-408 250-342 (488)
90 TIGR00313 cobQ cobyric acid sy 99.2 7.6E-10 1.6E-14 123.0 19.7 305 4-407 1-335 (475)
91 PF01174 SNO: SNO glutamine am 99.2 2.8E-10 6.2E-15 111.0 13.5 160 309-547 4-187 (188)
92 KOG1559 Gamma-glutamyl hydrola 99.0 3.6E-10 7.9E-15 113.1 7.3 182 315-533 81-275 (340)
93 PRK13896 cobyrinic acid a,c-di 99.0 2.6E-08 5.6E-13 109.4 20.8 290 1-407 1-324 (433)
94 PF13507 GATase_5: CobB/CobQ-l 98.7 3.4E-07 7.3E-12 94.5 15.1 196 298-533 2-233 (259)
95 TIGR01857 FGAM-synthase phosph 98.6 3E-06 6.6E-11 102.8 22.9 222 296-544 976-1237(1239)
96 PF00988 CPSase_sm_chain: Carb 98.6 3.4E-09 7.5E-14 98.2 -1.8 81 178-267 50-130 (131)
97 cd01750 GATase1_CobQ Type 1 gl 98.6 9.3E-08 2E-12 94.2 7.8 83 300-408 1-89 (194)
98 PRK05297 phosphoribosylformylg 98.5 2.4E-06 5.1E-11 105.0 18.0 198 296-533 1034-1263(1290)
99 KOG3210 Imidazoleglycerol-phos 98.5 1.4E-06 2.9E-11 83.6 12.4 88 298-407 12-107 (226)
100 PRK06278 cobyrinic acid a,c-di 98.5 2.8E-07 6E-12 102.5 7.9 78 298-407 1-81 (476)
101 PLN03206 phosphoribosylformylg 98.4 9E-06 2E-10 99.4 18.6 205 296-533 1036-1276(1307)
102 cd03130 GATase1_CobB Type 1 gl 98.4 7.8E-07 1.7E-11 88.0 7.9 75 312-408 12-92 (198)
103 TIGR01735 FGAM_synt phosphorib 98.3 5.5E-06 1.2E-10 101.7 15.4 197 296-532 1054-1283(1310)
104 COG1797 CobB Cobyrinic acid a, 98.2 0.00035 7.5E-09 76.4 24.0 195 298-546 246-450 (451)
105 PF04204 HTS: Homoserine O-suc 98.1 7.7E-05 1.7E-09 78.3 15.1 209 296-551 33-255 (298)
106 cd01653 GATase1 Type 1 glutami 97.8 9.3E-05 2E-09 62.0 8.6 76 312-404 13-92 (115)
107 cd03131 GATase1_HTS Type 1 glu 97.8 0.00012 2.6E-09 71.6 9.9 53 360-412 60-119 (175)
108 cd03146 GAT1_Peptidase_E Type 97.7 7.5E-05 1.6E-09 74.7 7.5 90 295-405 29-128 (212)
109 PHA03366 FGAM-synthase; Provis 97.7 0.00084 1.8E-08 83.0 17.9 91 294-405 1025-1131(1304)
110 TIGR01001 metA homoserine O-su 97.7 0.00055 1.2E-08 71.7 14.0 206 296-547 34-251 (300)
111 cd03144 GATase1_ScBLP_like Typ 97.7 6.2E-05 1.3E-09 68.7 5.0 78 306-404 8-90 (114)
112 PF07685 GATase_3: CobB/CobQ-l 97.6 6E-05 1.3E-09 72.0 4.8 51 358-408 3-59 (158)
113 TIGR01739 tegu_FGAM_synt herpe 97.6 0.0017 3.6E-08 80.0 17.8 89 296-405 928-1032(1202)
114 cd03128 GAT_1 Type 1 glutamine 97.4 0.00043 9.4E-09 55.3 6.2 45 360-404 44-92 (92)
115 PF09825 BPL_N: Biotin-protein 96.8 0.1 2.2E-06 56.9 18.8 91 299-405 2-96 (367)
116 PRK11780 isoprenoid biosynthes 96.5 0.0042 9.2E-08 62.7 6.1 49 360-408 83-145 (217)
117 PRK05282 (alpha)-aspartyl dipe 96.5 0.0099 2.1E-07 60.8 8.5 106 279-407 15-129 (233)
118 cd03133 GATase1_ES1 Type 1 glu 96.4 0.0059 1.3E-07 61.6 6.0 49 360-408 80-142 (213)
119 cd03169 GATase1_PfpI_1 Type 1 96.1 0.0076 1.6E-07 58.2 5.1 45 362-406 76-123 (180)
120 TIGR01382 PfpI intracellular p 95.9 0.011 2.5E-07 55.9 5.2 46 361-406 59-107 (166)
121 COG1492 CobQ Cobyric acid synt 95.6 0.014 3E-07 65.1 4.9 54 1-67 1-54 (486)
122 cd02037 MRP-like MRP (Multiple 95.4 0.078 1.7E-06 50.5 8.8 127 7-218 4-130 (169)
123 cd03132 GATase1_catalase Type 95.3 0.1 2.2E-06 48.3 8.9 45 362-406 62-110 (142)
124 PRK00090 bioD dithiobiotin syn 95.3 0.036 7.9E-07 55.1 6.2 166 4-220 2-173 (222)
125 cd03134 GATase1_PfpI_like A ty 95.3 0.028 6E-07 53.2 5.1 45 361-405 61-108 (165)
126 cd03147 GATase1_Ydr533c_like T 95.0 0.036 7.9E-07 56.5 5.3 47 360-406 92-142 (231)
127 PRK12374 putative dithiobiotin 95.0 0.096 2.1E-06 52.9 8.4 169 1-221 2-176 (231)
128 PRK13768 GTPase; Provisional 94.7 0.19 4.1E-06 51.7 9.8 39 2-42 3-41 (253)
129 COG0693 ThiJ Putative intracel 94.6 0.043 9.4E-07 53.2 4.5 45 361-405 65-113 (188)
130 PRK04155 chaperone protein Hch 94.5 0.052 1.1E-06 57.2 5.4 46 360-405 145-194 (287)
131 COG3442 Predicted glutamine am 94.4 0.31 6.7E-06 49.5 10.0 47 361-407 51-103 (250)
132 cd01983 Fer4_NifH The Fer4_Nif 94.3 0.11 2.4E-06 43.1 6.0 33 4-38 2-34 (99)
133 PF01965 DJ-1_PfpI: DJ-1/PfpI 94.3 0.03 6.5E-07 52.4 2.7 46 360-405 35-85 (147)
134 PRK09435 membrane ATPase/prote 94.0 0.31 6.7E-06 52.5 10.0 63 3-67 58-128 (332)
135 cd03148 GATase1_EcHsp31_like T 93.8 0.1 2.2E-06 53.3 5.5 46 360-405 94-143 (232)
136 cd03129 GAT1_Peptidase_E_like 93.7 0.26 5.7E-06 49.0 8.3 106 283-406 17-129 (210)
137 cd03137 GATase1_AraC_1 AraC tr 93.6 0.15 3.2E-06 49.2 6.1 48 359-406 61-111 (187)
138 cd03140 GATase1_PfpI_3 Type 1 93.2 0.15 3.3E-06 48.8 5.3 46 361-406 59-106 (170)
139 cd03141 GATase1_Hsp31_like Typ 93.1 0.13 2.7E-06 51.9 4.9 47 360-406 88-138 (221)
140 cd03138 GATase1_AraC_2 AraC tr 93.0 0.17 3.8E-06 49.1 5.6 46 360-405 67-118 (195)
141 cd03135 GATase1_DJ-1 Type 1 gl 92.7 0.17 3.6E-06 47.4 4.9 46 361-406 59-108 (163)
142 PRK11574 oxidative-stress-resi 92.5 0.23 5.1E-06 48.5 5.7 45 361-405 65-113 (196)
143 PRK14974 cell division protein 92.5 2 4.4E-05 46.3 13.2 39 2-42 141-179 (336)
144 TIGR01968 minD_bact septum sit 92.5 2.3 4.9E-05 42.7 13.0 40 2-42 2-41 (261)
145 TIGR00750 lao LAO/AO transport 92.4 0.77 1.7E-05 48.4 9.8 44 1-46 34-77 (300)
146 KOG1907 Phosphoribosylformylgl 92.4 2.7 5.8E-05 50.2 14.6 195 297-531 1058-1287(1320)
147 PRK05632 phosphate acetyltrans 92.2 0.93 2E-05 53.3 11.2 37 1-38 2-38 (684)
148 cd00550 ArsA_ATPase Oxyanion-t 91.7 0.54 1.2E-05 48.3 7.6 39 2-42 1-39 (254)
149 TIGR01383 not_thiJ DJ-1 family 91.5 0.29 6.3E-06 46.7 5.1 47 360-406 61-111 (179)
150 cd03139 GATase1_PfpI_2 Type 1 91.0 0.33 7.2E-06 46.4 4.9 46 360-405 60-108 (183)
151 PRK10867 signal recognition pa 91.0 3.4 7.3E-05 46.2 13.4 39 2-42 101-140 (433)
152 TIGR00064 ftsY signal recognit 91.0 4.6 0.0001 42.2 13.7 39 2-42 73-111 (272)
153 TIGR03371 cellulose_yhjQ cellu 90.7 1.3 2.9E-05 44.2 9.1 41 1-42 1-41 (246)
154 PHA02518 ParA-like protein; Pr 90.4 1.1 2.3E-05 43.7 7.8 33 11-43 9-41 (211)
155 cd03136 GATase1_AraC_ArgR_like 90.3 0.56 1.2E-05 45.3 5.8 46 360-405 62-109 (185)
156 PF13278 DUF4066: Putative ami 90.3 0.36 7.7E-06 45.8 4.3 47 360-406 59-108 (166)
157 PRK11249 katE hydroperoxidase 90.0 1.1 2.3E-05 53.2 8.7 102 296-405 596-705 (752)
158 TIGR01969 minD_arch cell divis 89.7 2.3 5.1E-05 42.4 9.9 33 10-42 8-40 (251)
159 cd03114 ArgK-like The function 89.5 2.1 4.6E-05 40.5 8.8 38 4-43 2-39 (148)
160 PRK13849 putative crown gall t 86.5 8.1 0.00018 39.3 11.5 44 1-45 1-44 (231)
161 PRK09393 ftrA transcriptional 86.1 1.3 2.8E-05 46.7 5.8 48 359-406 72-121 (322)
162 cd02042 ParA ParA and ParB of 86.1 2.9 6.2E-05 36.2 7.0 36 7-42 4-39 (104)
163 PRK10818 cell division inhibit 86.0 9 0.0002 39.1 11.7 40 2-42 3-42 (270)
164 TIGR00959 ffh signal recogniti 86.0 5.8 0.00013 44.3 10.9 141 3-217 101-247 (428)
165 PRK11889 flhF flagellar biosyn 85.7 5.1 0.00011 44.6 10.1 143 2-216 242-384 (436)
166 cd03115 SRP The signal recogni 84.9 11 0.00024 35.8 11.0 37 4-42 3-39 (173)
167 PRK14494 putative molybdopteri 84.6 1.7 3.8E-05 44.4 5.6 37 1-39 1-37 (229)
168 COG1897 MetA Homoserine trans- 84.3 20 0.00044 37.5 12.9 197 296-532 34-242 (307)
169 TIGR00347 bioD dethiobiotin sy 84.2 4.1 8.9E-05 38.5 7.7 29 10-38 5-33 (166)
170 PRK14493 putative bifunctional 84.1 2.2 4.8E-05 44.7 6.3 52 1-56 1-56 (274)
171 cd02035 ArsA ArsA ATPase funct 83.8 5.9 0.00013 39.5 8.9 39 4-44 2-40 (217)
172 TIGR03499 FlhF flagellar biosy 83.5 1.8 3.8E-05 45.4 5.3 40 2-43 195-236 (282)
173 TIGR02069 cyanophycinase cyano 83.2 5.5 0.00012 41.2 8.6 108 283-405 16-130 (250)
174 PF13500 AAA_26: AAA domain; P 82.0 2 4.4E-05 41.9 4.7 163 3-218 2-167 (199)
175 CHL00072 chlL photochlorophyll 81.4 2.7 5.8E-05 44.2 5.7 43 1-46 1-43 (290)
176 PRK13232 nifH nitrogenase redu 81.1 2.4 5.3E-05 43.6 5.2 43 1-45 1-43 (273)
177 cd02029 PRK_like Phosphoribulo 80.7 2.5 5.5E-05 44.4 5.1 44 4-49 2-45 (277)
178 PRK13230 nitrogenase reductase 79.5 3.5 7.5E-05 42.6 5.7 45 1-47 1-45 (279)
179 cd02040 NifH NifH gene encodes 79.4 3.4 7.3E-05 42.0 5.5 44 1-46 1-44 (270)
180 COG0003 ArsA Predicted ATPase 79.2 3.3 7.1E-05 44.5 5.5 49 1-51 2-50 (322)
181 PF02374 ArsA_ATPase: Anion-tr 78.2 3 6.5E-05 44.3 4.9 42 1-44 1-42 (305)
182 COG0132 BioD Dethiobiotin synt 78.0 3.8 8.3E-05 41.8 5.3 184 1-231 2-187 (223)
183 cd03116 MobB Molybdenum is an 78.0 4.7 0.0001 38.8 5.7 40 1-42 1-40 (159)
184 KOG2764 Putative transcription 77.6 3.6 7.9E-05 42.2 4.9 44 361-404 66-113 (247)
185 COG2894 MinD Septum formation 76.9 3.6 7.8E-05 42.3 4.7 38 2-40 3-40 (272)
186 cd03145 GAT1_cyanophycinase Ty 76.5 10 0.00022 38.2 7.9 107 284-405 18-131 (217)
187 cd02034 CooC The accessory pro 76.2 5.3 0.00012 36.3 5.3 36 4-41 2-37 (116)
188 TIGR00176 mobB molybdopterin-g 76.0 4.6 0.0001 38.6 5.0 35 4-40 2-36 (155)
189 cd03109 DTBS Dethiobiotin synt 74.9 7.4 0.00016 36.0 6.0 37 3-42 2-38 (134)
190 cd06300 PBP1_ABC_sugar_binding 74.3 18 0.00038 36.2 9.0 85 299-397 1-91 (272)
191 PF01656 CbiA: CobQ/CobB/MinD/ 74.2 4.8 0.0001 38.3 4.6 36 10-45 6-41 (195)
192 TIGR03815 CpaE_hom_Actino heli 74.2 29 0.00063 36.7 11.0 42 2-44 94-135 (322)
193 cd02028 UMPK_like Uridine mono 72.2 7.1 0.00015 38.0 5.4 41 4-46 2-42 (179)
194 PRK07667 uridine kinase; Provi 72.1 7.4 0.00016 38.2 5.5 40 3-44 19-58 (193)
195 TIGR01425 SRP54_euk signal rec 71.9 5.9 0.00013 44.3 5.2 40 2-43 101-140 (429)
196 cd02033 BchX Chlorophyllide re 71.8 7 0.00015 42.1 5.7 41 2-44 32-72 (329)
197 TIGR01007 eps_fam capsular exo 71.8 7.6 0.00016 38.0 5.5 43 1-44 17-59 (204)
198 PRK12724 flagellar biosynthesi 71.8 5.9 0.00013 44.3 5.2 41 2-44 224-265 (432)
199 PRK01911 ppnK inorganic polyph 71.2 9.1 0.0002 40.6 6.3 36 361-401 63-98 (292)
200 PRK13233 nifH nitrogenase redu 70.4 7.4 0.00016 40.0 5.3 43 1-45 2-45 (275)
201 CHL00175 minD septum-site dete 70.0 8.6 0.00019 39.6 5.7 45 2-47 16-61 (281)
202 PF06564 YhjQ: YhjQ protein; 69.5 8 0.00017 40.0 5.3 46 1-47 1-52 (243)
203 PRK13235 nifH nitrogenase redu 69.0 8.5 0.00018 39.6 5.4 43 1-45 1-43 (274)
204 COG4285 Uncharacterized conser 68.9 17 0.00038 37.1 7.3 80 306-401 6-92 (253)
205 PRK10037 cell division protein 68.2 7.9 0.00017 39.4 4.9 41 1-42 1-41 (250)
206 cd02038 FleN-like FleN is a me 68.1 28 0.00061 32.1 8.2 38 4-42 2-39 (139)
207 TIGR03018 pepcterm_TyrKin exop 68.0 11 0.00024 37.2 5.8 42 1-43 35-77 (207)
208 PRK10416 signal recognition pa 68.0 9.2 0.0002 41.0 5.5 39 2-42 115-153 (318)
209 cd01672 TMPK Thymidine monopho 67.9 8.9 0.00019 36.5 5.0 36 2-39 1-36 (200)
210 PRK13234 nifH nitrogenase redu 67.4 10 0.00022 39.9 5.7 43 1-45 4-46 (295)
211 PF02424 ApbE: ApbE family; I 67.1 4.2 9.2E-05 41.9 2.7 90 11-112 110-213 (254)
212 PRK10751 molybdopterin-guanine 66.9 12 0.00025 36.8 5.6 38 2-41 7-44 (173)
213 cd01830 XynE_like SGNH_hydrola 66.8 16 0.00034 35.7 6.6 87 92-186 21-131 (204)
214 PRK13236 nitrogenase reductase 66.3 10 0.00022 39.9 5.4 42 2-45 7-48 (296)
215 PRK13185 chlL protochlorophyll 65.7 12 0.00026 38.3 5.7 42 2-45 3-44 (270)
216 PRK12726 flagellar biosynthesi 65.3 11 0.00023 41.9 5.4 39 2-42 207-245 (407)
217 PRK03372 ppnK inorganic polyph 64.8 14 0.00031 39.4 6.2 36 361-401 71-106 (306)
218 cd02036 MinD Bacterial cell di 63.7 10 0.00022 35.6 4.4 34 9-42 6-39 (179)
219 PF03575 Peptidase_S51: Peptid 63.5 7.1 0.00015 36.9 3.3 73 315-403 4-81 (154)
220 PLN02929 NADH kinase 63.4 9.6 0.00021 40.7 4.5 65 309-400 32-96 (301)
221 cd02032 Bchl_like This family 62.9 18 0.00039 37.0 6.4 42 1-45 1-42 (267)
222 PF06283 ThuA: Trehalose utili 62.0 20 0.00043 35.7 6.3 43 358-400 48-90 (217)
223 PRK05703 flhF flagellar biosyn 61.5 12 0.00026 41.7 5.1 39 2-42 222-262 (424)
224 PRK02155 ppnK NAD(+)/NADH kina 61.3 19 0.00042 38.1 6.4 89 299-401 7-97 (291)
225 PRK06696 uridine kinase; Valid 61.2 17 0.00038 36.3 5.8 41 3-45 24-64 (223)
226 PRK13231 nitrogenase reductase 61.1 9 0.0002 39.1 3.8 42 1-45 2-43 (264)
227 KOG2825 Putative arsenite-tran 61.1 9.3 0.0002 40.1 3.8 43 2-46 20-62 (323)
228 PRK04539 ppnK inorganic polyph 59.4 20 0.00044 38.1 6.2 36 361-401 67-102 (296)
229 PRK06731 flhF flagellar biosyn 59.1 2.1E+02 0.0046 30.0 13.5 141 3-216 77-218 (270)
230 cd02117 NifH_like This family 58.9 17 0.00037 35.9 5.2 42 3-46 2-43 (212)
231 PRK13869 plasmid-partitioning 58.7 14 0.00031 40.8 5.0 44 2-46 122-165 (405)
232 PRK11670 antiporter inner memb 58.5 17 0.00036 39.8 5.5 43 2-45 108-150 (369)
233 PF10087 DUF2325: Uncharacteri 57.4 50 0.0011 28.8 7.3 80 299-397 1-81 (97)
234 PRK04885 ppnK inorganic polyph 57.3 21 0.00045 37.4 5.7 35 362-401 35-71 (265)
235 PF02572 CobA_CobO_BtuR: ATP:c 56.5 9.4 0.0002 37.5 2.9 29 11-39 9-39 (172)
236 PRK14076 pnk inorganic polypho 56.1 31 0.00068 39.9 7.4 104 284-401 275-382 (569)
237 PRK01184 hypothetical protein; 55.9 14 0.0003 35.5 3.9 29 1-35 1-29 (184)
238 cd06312 PBP1_ABC_sugar_binding 55.8 57 0.0012 32.6 8.5 85 299-398 1-89 (271)
239 PF00142 Fer4_NifH: 4Fe-4S iro 55.7 14 0.00031 38.9 4.1 32 12-43 9-40 (273)
240 PRK03708 ppnK inorganic polyph 55.3 22 0.00048 37.3 5.6 87 298-401 1-90 (277)
241 PRK00771 signal recognition pa 55.1 19 0.00042 40.3 5.4 39 2-42 96-134 (437)
242 cd06320 PBP1_allose_binding Pe 55.0 61 0.0013 32.3 8.6 33 361-397 56-88 (275)
243 TIGR02016 BchX chlorophyllide 53.9 22 0.00047 37.6 5.3 40 3-44 2-41 (296)
244 cd01391 Periplasmic_Binding_Pr 53.5 45 0.00099 31.7 7.1 32 361-397 57-88 (269)
245 TIGR01287 nifH nitrogenase iro 53.1 23 0.0005 36.3 5.3 41 3-45 2-42 (275)
246 PRK14489 putative bifunctional 53.0 23 0.00051 38.5 5.5 39 1-41 205-243 (366)
247 PRK14495 putative molybdopteri 52.7 21 0.00046 40.2 5.1 39 1-41 1-39 (452)
248 cd03110 Fer4_NifH_child This p 52.6 88 0.0019 29.7 8.8 29 11-43 8-36 (179)
249 PLN02727 NAD kinase 52.5 25 0.00054 42.9 5.9 36 361-401 742-777 (986)
250 COG1192 Soj ATPases involved i 52.0 22 0.00048 36.0 4.9 36 9-44 9-45 (259)
251 cd03794 GT1_wbuB_like This fam 51.7 2.7E+02 0.0058 28.0 16.4 42 2-43 1-43 (394)
252 COG0521 MoaB Molybdopterin bio 51.1 76 0.0016 31.3 8.1 74 89-173 27-115 (169)
253 KOG2708 Predicted metalloprote 50.9 45 0.00097 34.6 6.6 50 361-414 69-122 (336)
254 PF00485 PRK: Phosphoribulokin 50.9 19 0.00042 35.0 4.1 38 4-43 2-43 (194)
255 PRK07414 cob(I)yrinic acid a,c 50.8 14 0.0003 36.6 3.0 28 12-39 28-57 (178)
256 COG4126 Hydantoin racemase [Am 50.1 21 0.00046 36.6 4.2 45 361-412 68-112 (230)
257 PRK15453 phosphoribulokinase; 50.0 21 0.00046 38.0 4.4 48 2-51 6-53 (290)
258 cd06267 PBP1_LacI_sugar_bindin 49.5 73 0.0016 30.8 8.0 31 361-397 54-84 (264)
259 PRK02649 ppnK inorganic polyph 49.2 41 0.00088 36.0 6.4 36 361-401 67-102 (305)
260 TIGR01281 DPOR_bchL light-inde 48.9 34 0.00073 34.9 5.7 35 11-45 8-42 (268)
261 COG3155 ElbB Uncharacterized p 48.7 27 0.00058 34.3 4.5 49 361-409 84-146 (217)
262 PRK13886 conjugal transfer pro 48.6 30 0.00065 35.8 5.2 42 1-42 1-42 (241)
263 cd06299 PBP1_LacI_like_13 Liga 47.8 78 0.0017 31.2 8.0 29 361-395 54-82 (265)
264 COG1703 ArgK Putative periplas 47.8 22 0.00048 38.1 4.1 95 5-152 55-153 (323)
265 PRK03378 ppnK inorganic polyph 47.4 45 0.00098 35.4 6.4 36 361-401 62-97 (292)
266 PRK06953 short chain dehydroge 47.1 24 0.00053 34.5 4.1 34 1-40 1-34 (222)
267 PF01583 APS_kinase: Adenylyls 47.0 30 0.00065 33.5 4.6 36 3-40 4-39 (156)
268 PRK14075 pnk inorganic polypho 46.9 47 0.001 34.5 6.4 72 298-401 1-72 (256)
269 PRK14077 pnk inorganic polypho 46.9 46 0.001 35.2 6.4 85 298-401 11-98 (287)
270 PF13614 AAA_31: AAA domain; P 46.0 43 0.00094 30.7 5.4 40 2-42 1-40 (157)
271 cd06321 PBP1_ABC_sugar_binding 45.6 1E+02 0.0022 30.7 8.4 33 361-397 56-88 (271)
272 PF03205 MobB: Molybdopterin g 45.6 36 0.00078 31.9 4.8 37 2-40 1-37 (140)
273 cd06301 PBP1_rhizopine_binding 45.4 1E+02 0.0022 30.6 8.4 33 361-397 55-87 (272)
274 PRK08267 short chain dehydroge 45.3 24 0.00052 35.3 3.9 31 1-37 1-31 (260)
275 PRK08727 hypothetical protein; 44.6 16 0.00035 37.0 2.5 59 3-63 43-101 (233)
276 COG3340 PepE Peptidase E [Amin 44.5 89 0.0019 32.1 7.6 91 297-404 32-131 (224)
277 cd01836 FeeA_FeeB_like SGNH_hy 44.4 46 0.00099 31.7 5.5 59 119-184 54-116 (191)
278 PRK05693 short chain dehydroge 44.3 24 0.00052 35.7 3.7 32 1-38 1-32 (274)
279 PRK07102 short chain dehydroge 44.0 24 0.00052 34.9 3.6 34 1-40 1-34 (243)
280 PF13407 Peripla_BP_4: Peripla 44.0 1E+02 0.0022 30.5 8.1 83 300-397 1-86 (257)
281 PRK06179 short chain dehydroge 43.4 26 0.00057 35.2 3.8 34 2-41 5-38 (270)
282 TIGR00041 DTMP_kinase thymidyl 43.4 43 0.00093 32.2 5.1 34 2-37 4-37 (195)
283 PRK09701 D-allose transporter 43.2 1.4E+02 0.003 31.0 9.3 86 298-397 25-113 (311)
284 PF00448 SRP54: SRP54-type pro 43.1 47 0.001 32.9 5.5 40 2-43 2-41 (196)
285 COG4090 Uncharacterized protei 42.9 30 0.00066 32.7 3.7 41 359-399 82-124 (154)
286 PRK09221 beta alanine--pyruvat 42.3 91 0.002 34.9 8.1 33 139-171 218-252 (445)
287 PRK04148 hypothetical protein; 42.1 29 0.00063 32.8 3.6 91 13-151 24-114 (134)
288 TIGR01133 murG undecaprenyldip 41.9 37 0.00079 35.3 4.7 34 1-38 1-35 (348)
289 PRK14528 adenylate kinase; Pro 41.9 33 0.00072 33.4 4.2 25 1-27 1-25 (186)
290 PRK09271 flavodoxin; Provision 41.7 1.3E+02 0.0027 28.7 8.0 41 359-399 48-93 (160)
291 cd06310 PBP1_ABC_sugar_binding 41.5 1.5E+02 0.0033 29.4 8.9 33 361-397 56-88 (273)
292 COG1879 RbsB ABC-type sugar tr 40.8 1.6E+02 0.0035 30.5 9.4 86 298-397 34-122 (322)
293 PRK10461 thiamine biosynthesis 40.8 20 0.00043 39.0 2.6 80 11-101 183-276 (350)
294 PRK02006 murD UDP-N-acetylmura 40.6 43 0.00094 37.7 5.4 31 2-36 122-152 (498)
295 cd06316 PBP1_ABC_sugar_binding 40.5 1.4E+02 0.0029 30.4 8.6 33 361-397 55-87 (294)
296 PHA02519 plasmid partition pro 40.2 29 0.00063 38.2 3.8 34 13-46 117-151 (387)
297 cd06305 PBP1_methylthioribose_ 40.1 1.5E+02 0.0033 29.2 8.7 33 361-397 54-86 (273)
298 PLN02935 Bifunctional NADH kin 40.1 52 0.0011 37.7 5.8 36 361-401 261-296 (508)
299 PRK03846 adenylylsulfate kinas 40.0 44 0.00096 32.7 4.7 40 2-43 25-64 (198)
300 PRK08177 short chain dehydroge 39.8 43 0.00094 32.8 4.6 34 1-40 1-34 (225)
301 PRK12723 flagellar biosynthesi 39.6 46 0.001 36.8 5.2 39 2-42 175-217 (388)
302 TIGR03029 EpsG chain length de 39.6 47 0.001 34.0 5.0 40 2-42 104-143 (274)
303 cd01536 PBP1_ABC_sugar_binding 39.4 1.7E+02 0.0037 28.4 8.9 72 312-397 13-86 (267)
304 PRK06940 short chain dehydroge 39.2 40 0.00088 34.4 4.5 31 2-40 3-33 (275)
305 PRK05642 DNA replication initi 39.1 22 0.00047 36.1 2.5 60 3-64 47-106 (234)
306 PF13472 Lipase_GDSL_2: GDSL-l 39.0 29 0.00063 31.4 3.1 91 87-188 12-115 (179)
307 cd06309 PBP1_YtfQ_like Peripla 39.0 1.3E+02 0.0028 30.0 8.0 33 361-397 54-86 (273)
308 COG0529 CysC Adenylylsulfate k 38.9 48 0.001 33.3 4.6 32 3-36 25-56 (197)
309 cd06282 PBP1_GntR_like_2 Ligan 38.9 1.6E+02 0.0036 28.7 8.7 33 361-398 54-86 (266)
310 PRK06924 short chain dehydroge 38.6 47 0.001 32.9 4.7 31 1-37 1-31 (251)
311 TIGR01012 Sa_S2_E_A ribosomal 38.6 1.1E+02 0.0024 30.8 7.3 77 298-398 62-138 (196)
312 PRK07890 short chain dehydroge 38.4 37 0.0008 33.7 3.9 32 2-39 6-37 (258)
313 COG1348 NifH Nitrogenase subun 38.3 29 0.00062 36.2 3.1 29 13-41 11-39 (278)
314 PRK06101 short chain dehydroge 38.3 34 0.00074 33.9 3.7 33 1-39 1-33 (240)
315 PRK07933 thymidylate kinase; V 38.1 57 0.0012 32.6 5.2 37 2-40 1-37 (213)
316 PRK06851 hypothetical protein; 38.1 53 0.0011 36.1 5.3 38 2-41 31-70 (367)
317 cd01538 PBP1_ABC_xylose_bindin 37.7 1.5E+02 0.0033 30.0 8.5 33 361-397 54-86 (288)
318 COG1763 MobB Molybdopterin-gua 37.7 85 0.0018 30.5 6.1 55 1-57 2-57 (161)
319 PRK05439 pantothenate kinase; 37.6 52 0.0011 35.3 5.1 41 3-45 88-130 (311)
320 cd01537 PBP1_Repressors_Sugar_ 37.3 1.7E+02 0.0036 28.2 8.3 32 361-397 54-85 (264)
321 PF09140 MipZ: ATPase MipZ; I 37.1 48 0.001 34.8 4.6 40 3-42 1-40 (261)
322 PRK05854 short chain dehydroge 37.0 34 0.00074 35.9 3.6 30 2-37 15-44 (313)
323 smart00852 MoCF_biosynth Proba 37.0 39 0.00085 31.0 3.6 69 315-395 22-90 (135)
324 PRK06947 glucose-1-dehydrogena 37.0 40 0.00086 33.3 3.9 30 1-36 2-31 (248)
325 PRK06732 phosphopantothenate-- 36.9 50 0.0011 33.6 4.7 37 1-38 1-47 (229)
326 cd05014 SIS_Kpsf KpsF-like pro 36.9 1.5E+02 0.0032 26.4 7.3 38 361-400 46-83 (128)
327 cd06319 PBP1_ABC_sugar_binding 36.7 1.7E+02 0.0037 29.0 8.5 33 361-397 54-86 (277)
328 PRK13973 thymidylate kinase; P 36.7 67 0.0015 31.9 5.5 35 2-38 4-38 (213)
329 COG2109 BtuR ATP:corrinoid ade 36.6 32 0.0007 34.6 3.1 29 10-38 33-63 (198)
330 PF08245 Mur_ligase_M: Mur lig 36.5 90 0.0019 29.8 6.2 26 13-38 4-29 (188)
331 COG0521 MoaB Molybdopterin bio 36.4 26 0.00056 34.5 2.3 70 314-395 30-100 (169)
332 PRK01231 ppnK inorganic polyph 36.2 89 0.0019 33.2 6.5 36 361-401 61-96 (295)
333 cd01539 PBP1_GGBP Periplasmic 35.5 1.9E+02 0.004 29.8 8.7 33 361-397 56-88 (303)
334 cd06306 PBP1_TorT-like TorT-li 35.5 2.1E+02 0.0045 28.6 8.9 32 361-397 56-87 (268)
335 PRK00561 ppnK inorganic polyph 35.4 31 0.00066 36.1 2.9 36 361-401 32-67 (259)
336 cd02023 UMPK Uridine monophosp 35.2 59 0.0013 31.5 4.7 37 4-44 2-38 (198)
337 cd06318 PBP1_ABC_sugar_binding 35.0 1.8E+02 0.004 28.9 8.4 31 361-395 54-84 (282)
338 TIGR00455 apsK adenylylsulfate 34.7 67 0.0014 30.8 5.0 37 2-40 19-55 (184)
339 TIGR00073 hypB hydrogenase acc 34.5 2.1E+02 0.0046 28.1 8.6 60 4-67 25-84 (207)
340 PRK04761 ppnK inorganic polyph 34.5 31 0.00068 35.8 2.7 37 360-401 23-59 (246)
341 PRK12742 oxidoreductase; Provi 34.4 47 0.001 32.4 3.9 29 2-36 7-35 (237)
342 PRK08303 short chain dehydroge 34.3 40 0.00087 35.4 3.6 30 2-37 9-38 (305)
343 PRK10355 xylF D-xylose transpo 34.2 3E+02 0.0064 29.1 10.2 86 296-397 24-112 (330)
344 PRK14734 coaE dephospho-CoA ki 34.1 51 0.0011 32.7 4.1 28 1-34 1-28 (200)
345 cd04728 ThiG Thiazole synthase 34.1 1.6E+02 0.0034 30.8 7.7 71 304-389 17-87 (248)
346 PRK06398 aldose dehydrogenase; 34.1 43 0.00092 33.8 3.6 30 2-37 7-36 (258)
347 PF10113 Fibrillarin_2: Fibril 34.0 1.4E+02 0.0031 33.5 7.6 93 64-180 119-228 (505)
348 COG1834 N-Dimethylarginine dim 33.9 65 0.0014 34.0 4.9 92 64-171 51-152 (267)
349 cd01575 PBP1_GntR Ligand-bindi 33.9 2.6E+02 0.0056 27.4 9.2 31 361-397 54-84 (268)
350 PRK05480 uridine/cytidine kina 33.8 73 0.0016 31.2 5.2 38 2-43 7-44 (209)
351 CHL00162 thiG thiamin biosynth 33.4 1.7E+02 0.0037 30.9 7.8 72 304-389 24-95 (267)
352 PLN02422 dephospho-CoA kinase 33.2 52 0.0011 33.8 4.1 28 1-34 1-28 (232)
353 COG1214 Inactive homolog of me 33.2 52 0.0011 33.4 4.0 39 361-399 57-97 (220)
354 COG0540 PyrB Aspartate carbamo 33.1 1E+02 0.0022 33.3 6.3 104 192-329 86-189 (316)
355 cd06322 PBP1_ABC_sugar_binding 32.9 2.6E+02 0.0056 27.5 9.1 33 361-397 54-86 (267)
356 PRK10653 D-ribose transporter 32.7 2.9E+02 0.0063 28.0 9.6 85 297-397 26-113 (295)
357 cd06273 PBP1_GntR_like_1 This 32.6 2.2E+02 0.0047 28.1 8.4 31 361-397 54-84 (268)
358 cd03111 CpaE_like This protein 32.5 58 0.0013 28.7 3.8 34 11-44 8-42 (106)
359 cd06302 PBP1_LsrB_Quorum_Sensi 32.4 2.1E+02 0.0046 29.2 8.6 33 361-397 55-87 (298)
360 PRK07035 short chain dehydroge 32.2 49 0.0011 32.8 3.7 30 2-37 9-38 (252)
361 PRK12748 3-ketoacyl-(acyl-carr 32.1 54 0.0012 32.7 4.0 32 2-38 6-38 (256)
362 PRK12481 2-deoxy-D-gluconate 3 32.0 47 0.001 33.3 3.5 30 2-37 9-38 (251)
363 PRK00208 thiG thiazole synthas 31.6 1.9E+02 0.0042 30.3 7.8 70 304-389 18-87 (250)
364 PRK09072 short chain dehydroge 31.5 51 0.0011 33.0 3.7 33 2-40 6-38 (263)
365 TIGR02637 RhaS rhamnose ABC tr 31.5 2.2E+02 0.0049 29.0 8.5 33 361-397 55-87 (302)
366 cd05013 SIS_RpiR RpiR-like pro 31.4 3.6E+02 0.0078 23.6 10.4 38 360-399 58-95 (139)
367 COG0052 RpsB Ribosomal protein 31.4 3.4E+02 0.0074 28.5 9.5 30 363-398 157-186 (252)
368 PRK01185 ppnK inorganic polyph 31.0 1.3E+02 0.0029 31.5 6.8 32 362-401 52-83 (271)
369 PF01408 GFO_IDH_MocA: Oxidore 31.0 68 0.0015 28.1 4.0 39 352-395 50-90 (120)
370 cd01451 vWA_Magnesium_chelatas 30.9 88 0.0019 29.9 5.1 59 365-423 102-172 (178)
371 PRK05993 short chain dehydroge 30.8 52 0.0011 33.5 3.7 34 1-40 4-37 (277)
372 TIGR03453 partition_RepA plasm 30.8 68 0.0015 35.0 4.8 37 8-44 110-146 (387)
373 cd02019 NK Nucleoside/nucleoti 30.8 93 0.002 25.2 4.5 32 4-39 2-33 (69)
374 PRK12829 short chain dehydroge 30.8 58 0.0012 32.3 3.9 33 2-40 12-44 (264)
375 PRK03333 coaE dephospho-CoA ki 30.7 57 0.0012 36.0 4.2 28 1-34 1-28 (395)
376 cd06274 PBP1_FruR Ligand bindi 30.7 2.5E+02 0.0055 27.6 8.6 31 361-397 54-84 (264)
377 COG4977 Transcriptional regula 30.6 81 0.0018 34.2 5.2 47 360-406 74-123 (328)
378 PF04392 ABC_sub_bind: ABC tra 30.6 1E+02 0.0022 32.1 5.8 102 280-399 116-219 (294)
379 PRK08339 short chain dehydroge 30.4 54 0.0012 33.2 3.7 30 2-37 9-38 (263)
380 TIGR01305 GMP_reduct_1 guanosi 30.3 2.4E+02 0.0053 30.8 8.6 148 246-412 52-237 (343)
381 KOG4180 Predicted kinase [Gene 30.3 47 0.001 36.0 3.2 62 310-397 74-135 (395)
382 PRK12828 short chain dehydroge 30.3 64 0.0014 31.3 4.1 34 2-41 8-41 (239)
383 PRK00698 tmk thymidylate kinas 30.1 90 0.002 30.0 5.1 34 2-37 4-37 (205)
384 PRK12727 flagellar biosynthesi 30.0 74 0.0016 36.9 5.0 39 2-42 351-391 (559)
385 PF13670 PepSY_2: Peptidase pr 30.0 70 0.0015 27.1 3.7 44 17-71 28-72 (83)
386 PRK08416 7-alpha-hydroxysteroi 29.8 54 0.0012 32.9 3.5 29 2-36 9-37 (260)
387 TIGR01360 aden_kin_iso1 adenyl 29.6 65 0.0014 30.5 3.9 25 1-27 3-27 (188)
388 PRK13705 plasmid-partitioning 29.5 55 0.0012 36.0 3.8 34 12-45 116-150 (388)
389 PF01513 NAD_kinase: ATP-NAD k 29.5 46 0.001 34.8 3.1 37 360-401 74-110 (285)
390 PRK00889 adenylylsulfate kinas 29.4 1E+02 0.0022 29.3 5.2 38 2-41 5-42 (175)
391 PRK06197 short chain dehydroge 29.4 55 0.0012 33.9 3.6 30 2-37 17-46 (306)
392 PRK07024 short chain dehydroge 29.4 56 0.0012 32.7 3.6 33 1-39 2-34 (257)
393 PRK10017 colanic acid biosynth 29.4 1.8E+02 0.004 32.5 7.9 34 298-331 1-38 (426)
394 PRK05579 bifunctional phosphop 29.4 65 0.0014 35.8 4.3 37 2-38 189-235 (399)
395 COG0451 WcaG Nucleoside-diphos 29.2 70 0.0015 32.5 4.3 32 4-41 3-34 (314)
396 PRK11519 tyrosine kinase; Prov 29.1 87 0.0019 37.3 5.6 40 2-42 527-566 (719)
397 PRK01390 murD UDP-N-acetylmura 29.1 1E+02 0.0023 34.1 6.0 62 2-73 115-178 (460)
398 PRK03501 ppnK inorganic polyph 29.1 1.1E+02 0.0024 32.1 5.7 35 361-400 38-74 (264)
399 COG0061 nadF NAD kinase [Coenz 29.0 91 0.002 32.7 5.2 36 361-401 54-89 (281)
400 PRK05786 fabG 3-ketoacyl-(acyl 29.0 62 0.0013 31.6 3.8 29 2-36 6-34 (238)
401 PF14403 CP_ATPgrasp_2: Circul 28.8 2E+02 0.0044 32.5 8.0 157 206-397 99-274 (445)
402 TIGR03325 BphB_TodD cis-2,3-di 28.8 62 0.0013 32.5 3.8 30 2-37 6-35 (262)
403 PRK08703 short chain dehydroge 28.7 65 0.0014 31.7 3.8 30 2-37 7-36 (239)
404 PRK08017 oxidoreductase; Provi 28.7 65 0.0014 31.9 3.9 32 2-39 3-34 (256)
405 PF03308 ArgK: ArgK protein; 28.7 65 0.0014 33.9 3.9 45 4-58 32-76 (266)
406 PF01695 IstB_IS21: IstB-like 28.7 72 0.0016 31.1 4.1 39 3-43 49-87 (178)
407 COG3640 CooC CO dehydrogenase 28.6 67 0.0014 33.5 3.9 36 4-41 3-39 (255)
408 PRK05876 short chain dehydroge 28.6 64 0.0014 33.0 3.9 30 2-37 7-36 (275)
409 TIGR01499 folC folylpolyglutam 28.6 72 0.0016 34.7 4.5 32 2-37 19-50 (397)
410 PF03668 ATP_bind_2: P-loop AT 28.5 62 0.0013 34.4 3.8 28 1-34 1-28 (284)
411 COG2327 WcaK Polysaccharide py 28.5 2.7E+02 0.0059 30.9 8.8 56 355-410 82-152 (385)
412 cd06311 PBP1_ABC_sugar_binding 28.2 2.8E+02 0.006 27.6 8.4 33 361-397 59-91 (274)
413 PLN02989 cinnamyl-alcohol dehy 28.2 89 0.0019 32.4 4.9 34 2-41 6-39 (325)
414 KOG1252 Cystathionine beta-syn 28.2 26 0.00055 38.1 0.9 43 10-52 216-260 (362)
415 cd01832 SGNH_hydrolase_like_1 28.0 1.2E+02 0.0025 28.6 5.3 46 138-185 66-116 (185)
416 cd01545 PBP1_SalR Ligand-bindi 27.9 3.1E+02 0.0067 26.9 8.6 32 361-397 55-86 (270)
417 PRK04296 thymidine kinase; Pro 27.8 1.3E+02 0.0029 29.3 5.8 38 2-45 3-42 (190)
418 PRK05866 short chain dehydroge 27.7 58 0.0013 33.8 3.5 30 2-37 41-70 (293)
419 cd06317 PBP1_ABC_sugar_binding 27.7 3.2E+02 0.0069 26.9 8.7 33 361-397 55-87 (275)
420 PF12846 AAA_10: AAA-like doma 27.7 93 0.002 31.4 4.9 35 3-41 3-37 (304)
421 cd06315 PBP1_ABC_sugar_binding 27.5 3.8E+02 0.0082 27.0 9.3 33 361-397 55-87 (280)
422 PF13450 NAD_binding_8: NAD(P) 27.5 82 0.0018 25.7 3.6 38 14-54 2-39 (68)
423 cd06324 PBP1_ABC_sugar_binding 27.5 3.2E+02 0.007 28.0 8.9 31 362-397 58-88 (305)
424 PRK09620 hypothetical protein; 27.4 81 0.0017 32.2 4.3 36 2-37 4-49 (229)
425 COG0489 Mrp ATPases involved i 27.4 95 0.0021 32.3 4.9 162 2-217 58-227 (265)
426 cd01541 PBP1_AraR Ligand-bindi 27.4 3.5E+02 0.0075 26.8 8.9 36 361-397 54-89 (273)
427 PRK11303 DNA-binding transcrip 27.4 4.1E+02 0.0088 27.3 9.7 83 297-396 61-146 (328)
428 cd00885 cinA Competence-damage 27.3 1.8E+02 0.004 28.2 6.6 76 315-405 23-99 (170)
429 PRK07831 short chain dehydroge 27.1 75 0.0016 31.8 4.0 31 2-37 18-48 (262)
430 COG1660 Predicted P-loop-conta 27.0 52 0.0011 34.8 2.8 21 1-23 1-21 (286)
431 PRK05717 oxidoreductase; Valid 26.9 67 0.0014 32.0 3.6 30 2-37 11-40 (255)
432 PRK08690 enoyl-(acyl carrier p 26.6 71 0.0015 32.3 3.8 30 2-36 7-37 (261)
433 PLN02913 dihydrofolate synthet 26.5 44 0.00096 38.1 2.5 32 2-37 76-107 (510)
434 PRK07806 short chain dehydroge 26.3 80 0.0017 31.1 4.0 29 2-36 7-35 (248)
435 PRK06463 fabG 3-ketoacyl-(acyl 26.3 74 0.0016 31.7 3.8 29 2-36 8-36 (255)
436 PRK08309 short chain dehydroge 26.3 1E+02 0.0022 30.1 4.6 29 1-37 1-29 (177)
437 PRK07814 short chain dehydroge 26.2 72 0.0016 32.1 3.7 34 2-41 11-44 (263)
438 PRK10310 PTS system galactitol 26.1 1.2E+02 0.0025 26.6 4.6 38 2-42 4-42 (94)
439 PRK06505 enoyl-(acyl carrier p 26.1 76 0.0016 32.4 3.9 31 2-37 8-39 (271)
440 PRK12377 putative replication 26.0 62 0.0013 33.5 3.2 59 3-63 103-171 (248)
441 PRK08340 glucose-1-dehydrogena 26.0 66 0.0014 32.2 3.4 29 3-37 2-30 (259)
442 PRK06523 short chain dehydroge 26.0 86 0.0019 31.2 4.2 33 2-40 10-42 (260)
443 PF04016 DUF364: Domain of unk 25.9 68 0.0015 30.5 3.3 63 295-371 9-71 (147)
444 cd06292 PBP1_LacI_like_10 Liga 25.9 4.3E+02 0.0092 26.1 9.2 35 361-397 54-89 (273)
445 PF09822 ABC_transp_aux: ABC-t 25.8 6.7E+02 0.015 25.6 10.9 72 296-391 145-225 (271)
446 PTZ00254 40S ribosomal protein 25.8 2.8E+02 0.006 29.1 7.8 76 299-398 73-148 (249)
447 PRK04020 rps2P 30S ribosomal p 25.7 2.6E+02 0.0056 28.4 7.4 77 298-398 68-144 (204)
448 PRK08993 2-deoxy-D-gluconate 3 25.6 72 0.0016 31.9 3.6 30 2-37 11-40 (253)
449 cd04731 HisF The cyclase subun 25.6 6.6E+02 0.014 25.2 10.6 97 120-246 28-127 (243)
450 COG0300 DltE Short-chain dehyd 25.6 76 0.0016 33.4 3.8 15 362-376 84-98 (265)
451 PRK06217 hypothetical protein; 25.5 69 0.0015 30.8 3.3 25 1-27 1-25 (183)
452 COG4242 CphB Cyanophycinase an 25.4 1.4E+02 0.003 31.5 5.4 77 317-405 73-154 (293)
453 PRK02496 adk adenylate kinase; 25.4 79 0.0017 30.2 3.7 25 1-27 1-25 (184)
454 PRK06720 hypothetical protein; 25.1 80 0.0017 30.4 3.6 30 2-37 17-46 (169)
455 PRK06761 hypothetical protein; 25.0 81 0.0018 33.4 3.9 33 2-36 4-36 (282)
456 TIGR01500 sepiapter_red sepiap 24.9 89 0.0019 31.3 4.1 34 3-38 2-35 (256)
457 PRK09730 putative NAD(P)-bindi 24.7 98 0.0021 30.3 4.3 30 1-36 1-30 (247)
458 PRK02231 ppnK inorganic polyph 24.6 67 0.0015 33.8 3.2 36 361-401 41-76 (272)
459 PRK09186 flagellin modificatio 24.6 85 0.0018 31.0 3.9 30 2-37 5-34 (256)
460 smart00864 Tubulin Tubulin/Fts 24.6 1.1E+02 0.0025 29.9 4.7 104 103-223 54-157 (192)
461 cd01540 PBP1_arabinose_binding 24.5 1.4E+02 0.003 30.0 5.4 33 361-397 53-85 (289)
462 PRK06943 adenosylmethionine--8 24.4 2.8E+02 0.0061 31.1 8.2 65 138-216 220-289 (453)
463 PTZ00451 dephospho-CoA kinase; 24.4 94 0.002 32.2 4.2 28 1-34 1-29 (244)
464 PRK06182 short chain dehydroge 24.3 85 0.0018 31.7 3.9 33 1-39 3-35 (273)
465 TIGR03575 selen_PSTK_euk L-ser 24.3 1E+02 0.0023 33.5 4.7 39 4-44 2-41 (340)
466 PRK07985 oxidoreductase; Provi 24.3 84 0.0018 32.5 3.9 29 2-36 50-78 (294)
467 cd06323 PBP1_ribose_binding Pe 24.2 4E+02 0.0086 26.0 8.6 33 361-397 54-86 (268)
468 PRK07677 short chain dehydroge 24.2 87 0.0019 31.1 3.9 31 2-38 2-32 (252)
469 PRK07063 short chain dehydroge 24.2 86 0.0019 31.3 3.8 30 2-37 8-37 (260)
470 PRK07453 protochlorophyllide o 24.2 78 0.0017 33.0 3.7 30 2-37 7-36 (322)
471 PRK07023 short chain dehydroge 24.0 1E+02 0.0022 30.4 4.3 31 1-37 1-31 (243)
472 PRK07478 short chain dehydroge 23.9 86 0.0019 31.2 3.7 30 2-37 7-36 (254)
473 PRK07062 short chain dehydroge 23.9 85 0.0018 31.4 3.7 33 2-40 9-41 (265)
474 KOG0635 Adenosine 5'-phosphosu 23.8 80 0.0017 31.0 3.3 30 3-34 33-62 (207)
475 PRK09417 mogA molybdenum cofac 23.8 1.7E+02 0.0036 29.3 5.6 70 90-169 24-109 (193)
476 PRK12859 3-ketoacyl-(acyl-carr 23.8 98 0.0021 31.0 4.1 31 2-37 7-38 (256)
477 PRK00081 coaE dephospho-CoA ki 23.7 1E+02 0.0022 30.2 4.2 28 1-34 2-29 (194)
478 cd01120 RecA-like_NTPases RecA 23.7 1.4E+02 0.0031 26.7 4.9 37 4-42 2-38 (165)
479 PRK05599 hypothetical protein; 23.6 70 0.0015 32.0 3.1 29 2-37 1-29 (246)
480 PLN02780 ketoreductase/ oxidor 23.6 72 0.0016 33.8 3.3 32 2-39 54-85 (320)
481 PRK05986 cob(I)alamin adenolsy 23.6 81 0.0018 31.6 3.4 27 13-39 30-58 (191)
482 PLN00198 anthocyanidin reducta 23.5 1.2E+02 0.0026 31.7 5.0 35 1-41 9-43 (338)
483 PLN02778 3,5-epimerase/4-reduc 23.5 1E+02 0.0022 32.3 4.3 27 4-36 12-38 (298)
484 PRK00421 murC UDP-N-acetylmura 23.4 1.6E+02 0.0035 32.8 6.1 88 293-396 3-95 (461)
485 PF08497 Radical_SAM_N: Radica 23.4 66 0.0014 34.4 2.8 11 521-531 281-291 (302)
486 TIGR00235 udk uridine kinase. 23.4 1.1E+02 0.0023 30.2 4.2 39 2-44 7-45 (207)
487 PLN02884 6-phosphofructokinase 23.3 1.1E+02 0.0024 34.2 4.7 61 352-414 131-208 (411)
488 PRK15408 autoinducer 2-binding 23.3 4.4E+02 0.0095 28.1 9.2 87 297-398 23-112 (336)
489 PRK12743 oxidoreductase; Provi 23.2 92 0.002 31.1 3.8 30 1-36 2-31 (256)
490 PRK09242 tropinone reductase; 23.2 87 0.0019 31.2 3.6 30 2-37 10-39 (257)
491 PRK14491 putative bifunctional 23.2 1.2E+02 0.0026 35.5 5.2 39 1-41 10-48 (597)
492 PRK06938 diaminobutyrate--2-ox 22.7 3.5E+02 0.0077 30.4 8.7 63 140-216 232-298 (464)
493 COG2022 ThiG Uncharacterized e 22.5 3.5E+02 0.0076 28.3 7.6 71 304-389 24-94 (262)
494 PRK06125 short chain dehydroge 22.5 95 0.0021 31.0 3.8 32 2-39 8-39 (259)
495 PRK06200 2,3-dihydroxy-2,3-dih 22.5 92 0.002 31.2 3.6 31 2-38 7-37 (263)
496 cd01826 acyloxyacyl_hydrolase_ 22.4 2.1E+02 0.0046 30.8 6.4 73 89-173 75-169 (305)
497 PRK08903 DnaA regulatory inact 22.4 1.4E+02 0.003 29.6 4.9 56 3-64 44-99 (227)
498 PRK10014 DNA-binding transcrip 22.4 4.5E+02 0.0097 27.2 8.9 31 361-396 119-149 (342)
499 PF05690 ThiG: Thiazole biosyn 22.4 1.3E+02 0.0027 31.4 4.5 72 304-389 16-87 (247)
500 PF09152 DUF1937: Domain of un 22.3 68 0.0015 29.7 2.4 36 360-395 77-112 (116)
No 1
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.8e-219 Score=1690.53 Aligned_cols=559 Identities=72% Similarity=1.179 Sum_probs=550.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||||+|||||||||||||+|||||+|||++|++||+||||||||+|||||||||||||||||||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+|||||||||||||++||+|||+||||||||||||||||+||+||+|+|+||||+++.+||||||||||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCC
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~ 240 (601)
||+||||+++|++|||+|||||||++++.|||||||||||||+||++|+.||+|+|||.+||..++|+|||+||||+++|
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCC-chhhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHH
Q 007496 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 319 (601)
Q Consensus 241 Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~-~~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~a 319 (601)
|+++|||+++|+||++|++||+.+++.++|+|+.... .++|+.|+.+++++++....++||+||||+.+.|+|.|+++|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 9999999999999999999999999999999985222 368999999999999999999999999999999999999999
Q ss_pred HHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007496 320 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (601)
Q Consensus 320 L~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICL 399 (601)
|+|++++++.|+++.||++++||+.+..++|.+||+||+.|+++|||++|||||+||++|||.|++|||||++|||||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeece
Q 007496 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (601)
Q Consensus 400 GmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrH 479 (601)
|||+++||||||+++++||||+||+|++++|++.+|||.+..|||||||||.+++.|..++|++++|||+..++.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999988999999999
Q ss_pred eeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcccCC
Q 007496 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQGSGS 559 (601)
Q Consensus 480 rYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~~~~ 559 (601)
||||||+.+.+||.+|+.|+|.+.+|++||++|+++||||+|+||||||+|+|.+|+|+|.++++|+.++++.++++.+.
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~~~l~~~~~ 560 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLDAYLQRGCR 560 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
No 2
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-211 Score=1662.26 Aligned_cols=529 Identities=57% Similarity=0.939 Sum_probs=511.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+. . +||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~~------~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAADS------T-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcCC------C-CCEEEEEeCCceecccccHHH
Confidence 999999999999999999999999999999999999999999999999962 2 999999999999999999999
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCC
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~ 240 (601)
||+|||+.++|++|++||||||||||.++|||||||||||||+|||+|||||+|+|||+++++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHHH
Q 007496 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (601)
Q Consensus 241 Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~aL 320 (601)
||+++|++|+|++|+.|++||+++.++++|+|+ .+.+++++|+++++++.++.+.++|||||||+++.|||+|+++||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999999999999999997 467899999999999999888899999999999999999999999
Q ss_pred HHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhcc-CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007496 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (601)
Q Consensus 321 ~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICL 399 (601)
+|+|+++.+++++.||+|++++.++.. .+. .+|||+||||||.||++|+|.|++|||||++|||||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~~-----------~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENAA-----------ELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccchh-----------hhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 999999999999999999999875531 222 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCC-cccCCCceeeCceeEEEccCCchhhhccCCceeEeeeec
Q 007496 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478 (601)
Q Consensus 400 GmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhr 478 (601)
|||++++||||||+||++|||+||+|++++|||.+|||+. ...+|||||||.+||.+.++ |+++++|+ +..|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999964 56799999999999999999 89999997 578999999
Q ss_pred eeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 007496 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLD 551 (601)
Q Consensus 479 HrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 551 (601)
|||||||+|+++||.+||+|+|+++||.+||++|+++||||+||||||||+|+|.+|||||.+|++||.++.+
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>PLN02327 CTP synthase
Probab=100.00 E-value=5.2e-208 Score=1681.78 Aligned_cols=555 Identities=85% Similarity=1.360 Sum_probs=538.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+|||+||+||||||++||+|||||||||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCC
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~ 240 (601)
||+||||+++|++|||||||||||||+++||+||||||||||+|||+|||||+|+|||+.+|++++|+|||+||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHHH
Q 007496 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (601)
Q Consensus 241 Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~aL 320 (601)
||+++|++++|+||++|++||+++.|+++|+|+.+.+.+++++|+++++++.++.++++|||||||+++.|||.||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999732345689999999999999888999999999999999999999999
Q ss_pred HHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007496 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (601)
Q Consensus 321 ~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLG 400 (601)
+|||+++++++++.||+++++++.+..++|++|+++|+.|+++|||++|||||+++.++++.++++||++++|+||||||
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999998777778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc-cCCchhhhccCCceeEeeeece
Q 007496 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH 479 (601)
Q Consensus 401 mQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~-~~~s~l~~lyg~~~~I~erhrH 479 (601)
||+|+++|||||+||++|+|+||++++++|+|.+||+++...+|||||||.|++.+. ++ |+++++|+....|++||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999988889999999999999998 66 8999999855468999999
Q ss_pred eeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcc
Q 007496 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQG 556 (601)
Q Consensus 480 rYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~ 556 (601)
||+||+++++.|+++||.++|+++||.+||++|+++||||+|||||||+.++|.+++|||.+|++||.+++++++++
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~~~~~ 556 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhHHhhhcC
Confidence 99999999999988999999999999889999999999999999999999999999999999999999988887653
No 4
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=9.1e-197 Score=1591.44 Aligned_cols=528 Identities=56% Similarity=0.949 Sum_probs=509.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999998 37899999999999999999999
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCC
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~ 240 (601)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+.++++++|+|||+||+|++++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHHH
Q 007496 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (601)
Q Consensus 241 Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~aL 320 (601)
||+++|++|+|+||++|++||+++.|+++|+|+ .+.++|++|+++++++.++.++++|||||||+++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999997 467799999999999999988999999999999999999999999
Q ss_pred HHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007496 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (601)
Q Consensus 321 ~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLG 400 (601)
+|+|+++.+++.+.|++++++++++ +++.|+++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999887543 347789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCC-cccCCCceeeCceeEEEccCCchhhhccCCceeEeeeece
Q 007496 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (601)
Q Consensus 401 mQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrH 479 (601)
||+|+++|||+++|+++|+|+||++++++|++.+|+++. ..++|||||+|.|+|.+.++ |+++++|+ +..+.|||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999999854 46899999999999999998 89999997 6678999999
Q ss_pred eeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007496 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 550 (601)
Q Consensus 480 rYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (601)
||+||+.+.+.++..||+++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++||.++.
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~ 530 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENK 530 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 99999999999988899999999988779999999999999999999999999999999999999998643
No 5
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=2.1e-195 Score=1580.57 Aligned_cols=524 Identities=58% Similarity=0.967 Sum_probs=505.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||||||||||+|||||||+|||||+|||++||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999995 468999999999999999999999
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCC
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~ 240 (601)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+.+|++++|+|||+||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHHH
Q 007496 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (601)
Q Consensus 241 Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~aL 320 (601)
||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|.++++++.++.+.++|||||||+++.|+|.||.+||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997 356689999999999999988999999999999999999999999
Q ss_pred HHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007496 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (601)
Q Consensus 321 ~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLG 400 (601)
+|+|+++.+++.+.|+++++++..+. +.|+++|||++|||||+++.++++.++++++++++|+||||||
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~~-----------~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEGA-----------EFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhhh-----------hhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999998754221 3588999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCC-cccCCCceeeCceeEEEccCCchhhhccCCceeEeeeece
Q 007496 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (601)
Q Consensus 401 mQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrH 479 (601)
||+|+++|||||+||++|+|+||++++++||+.+|+++. ..++|||||||.|+|.+.++ |+++++|+ ...+.|||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999965 58999999999999999998 89999997 5567899999
Q ss_pred eeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007496 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 545 (601)
Q Consensus 480 rYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~a 545 (601)
||+||+.+.+.++..||+++|+++||.+||++|+++||||+|||||||+.++|.+++|||.+|++|
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 999999999988889999999999976799999999999999999999999999999999999975
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=1.8e-140 Score=1055.43 Aligned_cols=276 Identities=65% Similarity=1.078 Sum_probs=237.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||||||||||+|||||||+|||||+|||++||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+|+|+||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999996 448999999999999999999999
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCC
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~ 240 (601)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+.+++++.|+|||+||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHH
Q 007496 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284 (601)
Q Consensus 241 Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w 284 (601)
||+++|++++|+||++|++||+++.++++|+|+ .+.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999999999999999998 477899999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=8.2e-132 Score=986.48 Aligned_cols=255 Identities=62% Similarity=1.031 Sum_probs=252.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (601)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 007496 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (601)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (601)
|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCe
Q 007496 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (601)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~V 241 (601)
|+|||++++|++|+|||||||||||+++||||||||||||+.||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCcccccHHHHhcch
Q 007496 242 ITLYDVPNIWHIPLLLRDQKA 262 (601)
Q Consensus 242 i~i~dvdtiy~vpl~L~~qg~ 262 (601)
+..+|++++|+||++|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=4.4e-64 Score=501.75 Aligned_cols=228 Identities=36% Similarity=0.565 Sum_probs=212.4
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg 376 (601)
+++|||||||+++.|||+||.+||+|+|+++++++++.||++++++++ +.|+++|||+||||||.||
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 379999999999999999999999999999999999999999988742 2489999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 377 ~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
++|||.+++|||++++||||||||||++++|||||+++++||+|+||++++++|+|.+||. ....+ .|+|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~~-------~h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVEK-------TGDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-ccccC-------ceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999983 22222 378999
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCch
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~ 536 (601)
.++ |+++++|+ +..+.+||||||+||+.+.+.++..||+++|+++||. ||++|+++||||+|||||||+.++|.+++
T Consensus 140 ~~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~~~~ 216 (229)
T PRK06186 140 RPG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPP 216 (229)
T ss_pred CCC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCCCCC
Confidence 888 89999996 6678899999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 007496 537 PLFLGLIAAACG 548 (601)
Q Consensus 537 pLF~~Fv~aa~~ 548 (601)
|||.+|+++|.+
T Consensus 217 ~LF~~Fv~aa~~ 228 (229)
T PRK06186 217 PLVRAFLRAARA 228 (229)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 9
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=1.4e-46 Score=379.32 Aligned_cols=234 Identities=62% Similarity=1.041 Sum_probs=213.1
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
++||+||||++..|+|.|++++|.+++.+...++.+.|+++++++..+. ++.|.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~----------~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENA----------EEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccch----------hhhhccCCEEEECCCCCCcch
Confidence 5899999999999999999999999999998899999999987654221 256789999999999999998
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCC-CcccCCCceeeCceeEEE
Q 007496 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~-~~~h~GgtmrLG~~~v~l 456 (601)
++.+.++++++++++|+||||+|||+|+++||+++++++++++.|+++..++|++.+|... ...++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999873 567889999999999999
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCch
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~ 536 (601)
.++ |+++++|+ +..+.++|+|+|+||++++..+...|+.+++++.|+..+|++|+++||||+|||||||+.+.|.+++
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~ 228 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPH 228 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCcc
Confidence 998 89999997 5567799999999999999876679999999999433499999999999999999999999998899
Q ss_pred HHHHHHH
Q 007496 537 PLFLGLI 543 (601)
Q Consensus 537 pLF~~Fv 543 (601)
+||.+|+
T Consensus 229 ~lF~~fv 235 (235)
T cd01746 229 PLFVGFV 235 (235)
T ss_pred HHHHHhC
Confidence 9999995
No 10
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-47 Score=393.41 Aligned_cols=280 Identities=19% Similarity=0.250 Sum_probs=226.6
Q ss_pred hhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcC-CCCCCCchh
Q 007496 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 280 (601)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~-l~~~~~~~~ 280 (601)
.+.||.++++.++|+|+.+..++|||++.||..||+.++|++|.+|||| +|+++||++|+|++.+..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 99999999999999776542 221000001
Q ss_pred hHHH-----HHHHHHhcC------------CCCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCccc
Q 007496 281 LKEW-----TSRAEICDG------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 343 (601)
Q Consensus 281 l~~w-----~~l~~~~~~------------~~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~ 343 (601)
...| .+|+..++. .....+|+++ ||+ .+.||++.|...|+++.+. +.-.+
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtVV--P~~t~------ 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTVV--PADTS------ 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEEE--cCCCC------
Confidence 1122 234444432 1225689999 588 8899999999999987652 22111
Q ss_pred ccccCCchhhhHHHHhc-cCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCC
Q 007496 344 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (601)
Q Consensus 344 ~~~~~~p~~y~~a~~~L-~~~DGIlvpGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~ 421 (601)
+.+.| .++|||+||+|||||. .+..+.+++...+.++|+|||||||||+++|+|++++||+
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Kmk----- 275 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMK----- 275 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecc-----
Confidence 22444 5899999999999996 5788999999999999999999999999999999999998
Q ss_pred ccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEE
Q 007496 422 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 501 (601)
Q Consensus 422 Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~ 501 (601)
| +|+|. ||||+.... ++..| ++|||+|+|+++.+. ..+ +++++
T Consensus 276 -F-----------------GHrG~-----NhPV~dl~t---------grv~I-TSQNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 276 -F-----------------GHRGA-----NHPVKDLDT---------GRVYI-TSQNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred -c-----------------CCCCC-----CcCcccccC---------CeEEE-EecCCceecChhhcC---CCc-eeEEE
Confidence 5 68886 899975543 47776 899999999998443 223 78888
Q ss_pred eCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007496 502 DETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 550 (601)
Q Consensus 502 s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (601)
+.++..+|++++++.|.| +||||||++++|+|.++||+.|++.+.+..
T Consensus 319 nlnDgTvEGi~h~~~P~f-SVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 319 NLNDGTVEGIRHKDLPAF-SVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred eCCCCCccceecCCCceE-EEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 865445999999999976 999999999999999999999999987654
No 11
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1.2e-40 Score=354.08 Aligned_cols=273 Identities=18% Similarity=0.274 Sum_probs=212.6
Q ss_pred hhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhH
Q 007496 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (601)
Q Consensus 203 ~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~ 282 (601)
+++|.++++.++|||+.+..+++|+++.+|..|++.++|++|.+|||| +|+++||++|+|++++..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999988642211100011222
Q ss_pred HH-----HHHHHHhcCCC----------CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCccccccc
Q 007496 283 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 347 (601)
Q Consensus 283 ~w-----~~l~~~~~~~~----------~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~ 347 (601)
.| .+++..++... ...+|+++ ||+ ...|++++|+.+|+.+.+ +.|-.+ +
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~v---vp~~~~--~------ 211 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTV---VPATTT--A------ 211 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEE---EeCCCC--H------
Confidence 23 34555555321 14689999 487 567999999999987543 222211 0
Q ss_pred CCchhhhHHHHhc-cCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCC
Q 007496 348 ENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (601)
Q Consensus 348 ~~p~~y~~a~~~L-~~~DGIlvpGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~ 425 (601)
.+.. .++||||||||||++. ....+..++++.++++|+||||||||+|+.++|+++.+++ +
T Consensus 212 ---------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~------~-- 274 (360)
T PRK12564 212 ---------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMK------F-- 274 (360)
T ss_pred ---------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC------C--
Confidence 1112 2799999999999975 4667889999999899999999999999999999997754 1
Q ss_pred CCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeC-C
Q 007496 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-T 504 (601)
Q Consensus 426 ~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~-d 504 (601)
+|+|. ++|+..... ++..+ .+|+|+|+|+++.+ +.++++++++. |
T Consensus 275 ---------------gh~G~-----~~pv~~~~~---------~~~~i-ts~~H~~~V~~~~l----p~~l~v~a~~~~D 320 (360)
T PRK12564 275 ---------------GHRGA-----NHPVKDLET---------GKVEI-TSQNHGFAVDEDSL----PANLEVTHVNLND 320 (360)
T ss_pred ---------------CccCC-----ceeeEECCC---------CcEEE-EecCcccEEccccc----CCceEEEEEeCCC
Confidence 34454 677765432 23333 68889999987654 56899999984 6
Q ss_pred CCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007496 505 SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 545 (601)
Q Consensus 505 g~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~a 545 (601)
+. +|+++++++|+| |||||||+.++|.+..+||++|+++
T Consensus 321 g~-iegi~~~~~pi~-gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 321 GT-VEGLRHKDLPAF-SVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred Cc-EEEEEECCCCEE-EEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 65 999999999965 9999999999999999999999976
No 12
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=1.8e-40 Score=352.47 Aligned_cols=276 Identities=20% Similarity=0.311 Sum_probs=212.5
Q ss_pred hhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhh
Q 007496 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (601)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l 281 (601)
.+++|.++++.++|||+.+..+++||++.+|..|++.++|++|.+|||| +|+++||++|+|++++..-+.+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999 999999999999998865222210000011
Q ss_pred HHH-----HHHHHHhcCC------C----CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccc
Q 007496 282 KEW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346 (601)
Q Consensus 282 ~~w-----~~l~~~~~~~------~----~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~ 346 (601)
..| .+++..++.. . ...+|+++ ||+ ...|++++|+.+|+.+.+ +.|..+ +
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~v---vp~~~~--~----- 207 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTV---VPYDTD--A----- 207 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEE---EcCCCC--H-----
Confidence 112 2345555431 1 11589999 587 667999999999987643 223211 1
Q ss_pred cCCchhhhHHHHhc-cCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccC
Q 007496 347 KENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (601)
Q Consensus 347 ~~~p~~y~~a~~~L-~~~DGIlvpGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~ 424 (601)
.+.. ..+|||||+||||++. ....++.++++.+ ++|+||||||||+|+.++|+++++++ +
T Consensus 208 ----------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~------~- 269 (358)
T TIGR01368 208 ----------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMK------F- 269 (358)
T ss_pred ----------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccC------c-
Confidence 1222 2579999999999986 4667888999987 99999999999999999999997764 2
Q ss_pred CCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeC-
Q 007496 425 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE- 503 (601)
Q Consensus 425 ~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~- 503 (601)
+|+|. +||+..... ++..+ ++++|+|+|+++.+. ..++++++++.
T Consensus 270 ----------------gh~G~-----nhpV~~~~~---------~~v~i-tsqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 270 ----------------GHRGG-----NHPVKDLIT---------GRVEI-TSQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred ----------------CcCCC-----ceeeEECCC---------CcEEE-eecCCCcEEcccccC---CCceEEEEEECC
Confidence 35564 678765432 23333 688999999876542 36899999984
Q ss_pred CCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHh
Q 007496 504 TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAAC 547 (601)
Q Consensus 504 dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~ 547 (601)
||. +|+++++++|+| |||||||+.++|.+..+||++|++++.
T Consensus 316 Dg~-Vegi~h~~~pi~-gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 316 DGT-VEGIRHKDLPVF-SVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCc-EEEEEECCCCEE-EEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 666 999999999955 999999999999999999999998874
No 13
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1.3e-39 Score=345.30 Aligned_cols=274 Identities=18% Similarity=0.220 Sum_probs=212.1
Q ss_pred hhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhH
Q 007496 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (601)
Q Consensus 203 ~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~ 282 (601)
+++|.++++.++|||+.+..++|||++.+|..|++.++|++|.+|||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999 99999999999999886422 11 0111222
Q ss_pred HH---HHHHHHhcCC------CCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhh
Q 007496 283 EW---TSRAEICDGL------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353 (601)
Q Consensus 283 ~w---~~l~~~~~~~------~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y 353 (601)
.| .+++..++.. ....+|+++ ||+ .+.+++++|..+|+.+.+ +.| +.+ +
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~v---vp~-~~~-~------------ 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTV---LPY-DTS-L------------ 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEE---EEC-CCC-H------------
Confidence 22 3455555542 224689999 476 788999999999877543 122 211 1
Q ss_pred hHHHHhc-cCCCEEEECCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCe
Q 007496 354 KAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 431 (601)
Q Consensus 354 ~~a~~~L-~~~DGIlvpGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pv 431 (601)
.+.. .++|||||+||||++.. ...+..++.+.++ +|+||||||||+|+.++|+++.+++.
T Consensus 202 ---~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~-------------- 263 (354)
T PRK12838 202 ---EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPF-------------- 263 (354)
T ss_pred ---HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCC--------------
Confidence 0111 37999999999999753 4567788888876 99999999999999999999987542
Q ss_pred eeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeC-CCCeEEE
Q 007496 432 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEI 510 (601)
Q Consensus 432 i~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~-dg~~vE~ 510 (601)
+|.|+ ++|+..... ++.. ..+++|+|+|+++.+. +.++.+++.+. |+. +|+
T Consensus 264 ---------gh~G~-----~hpV~~~~~---------~~~~-~ts~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~-Vea 315 (354)
T PRK12838 264 ---------GHRGA-----NHPVIDLTT---------GRVW-MTSQNHGYVVDEDSLD---GTPLSVRFFNVNDGS-IEG 315 (354)
T ss_pred ---------CccCC-----ceEEEECCC---------CeEE-EeccchheEecccccC---CCCcEEEEEECCCCe-EEE
Confidence 34554 788876543 1222 3578899999875542 34689999874 665 999
Q ss_pred EEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhc
Q 007496 511 VELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 548 (601)
Q Consensus 511 IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~ 548 (601)
++++++| ++|||||||+.++|.+..+||++|++++.+
T Consensus 316 i~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 316 LRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 9999999 569999999999999999999999999864
No 14
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=3.3e-38 Score=337.00 Aligned_cols=277 Identities=18% Similarity=0.270 Sum_probs=208.9
Q ss_pred hhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhh
Q 007496 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (601)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l 281 (601)
.+++|.++++.++|||+.+..+++||++.+|..|++.++|++|.+|||| +|+++||++|.|++++..-+.+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 999999999999998875332210000011
Q ss_pred HHH-----HHHHHHhcCC-----------------------CCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEE
Q 007496 282 KEW-----TSRAEICDGL-----------------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 333 (601)
Q Consensus 282 ~~w-----~~l~~~~~~~-----------------------~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i 333 (601)
..| .+++..++.. ....+|++++ ++ ...++++.|+.+|+++.+ +
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD-~g----~k~ni~~~L~~~G~~v~v---v 220 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVID-FG----VKYNILRRLKSFGCSITV---V 220 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEEE-CC----cHHHHHHHHHHCCCeEEE---E
Confidence 111 3445444321 1146899995 75 456899999999987543 2
Q ss_pred EeecCCCcccccccCCchhhhHHHHh-ccCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc
Q 007496 334 DWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (601)
Q Consensus 334 ~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlvpGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQllaiefgrn 411 (601)
.|-.+ . .+. ..++|||||+||||++. ....+..++.+.+.++|+||||||||+|+.++|++
T Consensus 221 p~~~~--~---------------~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~ 283 (382)
T CHL00197 221 PATSP--Y---------------QDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAK 283 (382)
T ss_pred cCCCC--H---------------HHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCE
Confidence 22111 0 011 13799999999999986 34556777887777899999999999999999999
Q ss_pred cccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhh
Q 007496 412 VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARL 491 (601)
Q Consensus 412 V~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~l 491 (601)
+.+++ + +|.|. ++|+.+. ++..+ ..++|+|.++++.+..
T Consensus 284 v~k~~------~-----------------Gh~g~-----n~pv~~~-----------~~v~i-tsq~H~~~v~~~sv~~- 322 (382)
T CHL00197 284 TFKLK------F-----------------GHRGL-----NHPSGLN-----------QQVEI-TSQNHGFAVNLESLAK- 322 (382)
T ss_pred EeccC------C-----------------CCCCC-----CEecCCC-----------CceEE-eecchheEeeccccCC-
Confidence 97754 2 34453 5665321 13333 5678999999876542
Q ss_pred ccCCeEEEEEe-CCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007496 492 ENAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 549 (601)
Q Consensus 492 e~~Gl~~~g~s-~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (601)
.++.+++.+ +|+. +|+++++++|+| |||||||+.++|++..++|+.|++.+.+.
T Consensus 323 --~~~~vt~~~~nDgt-vegi~h~~~pi~-gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 323 --NKFYITHFNLNDGT-VAGISHSPKPYF-SVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred --CCcEEEEEECCCCC-EEEEEECCCCcE-EEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 368888886 4666 999999999965 99999999999999999999999988653
No 15
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=4.5e-38 Score=337.25 Aligned_cols=267 Identities=19% Similarity=0.262 Sum_probs=204.6
Q ss_pred hhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcCC-CCCCCchh
Q 007496 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPL 280 (601)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l-~~~~~~~~ 280 (601)
.+.||.++++.++|||+.+..++|||++.+|..|+++++|++|.+|||| +|+++||++|+|++++..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999 999999999999998864221 10000111
Q ss_pred hHHH----HHHHHHhcCCC---------------------CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEe
Q 007496 281 LKEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 335 (601)
Q Consensus 281 l~~w----~~l~~~~~~~~---------------------~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~w 335 (601)
+..| .+++..++... ...+|+++ +|+ ++.+|++.|...|+++.+. .|
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~Vv---P~ 270 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITVV---PS 270 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEEE---CC
Confidence 1222 23444444310 11589999 488 7899999999999876542 22
Q ss_pred ecCCCcccccccCCchhhhHHHHhc-cCCCEEEECCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccc
Q 007496 336 IPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (601)
Q Consensus 336 i~s~~le~~~~~~~p~~y~~a~~~L-~~~DGIlvpGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~ 413 (601)
- .. +.+.+ .++|||||+||||++.. ...++.++.+. .++|+||||||||+|+.++|++|.
T Consensus 271 ~-~~----------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 271 T-WP----------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred C-CC----------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 1 10 11222 47999999999999863 44566667665 479999999999999999999998
Q ss_pred cccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhcc
Q 007496 414 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLEN 493 (601)
Q Consensus 414 gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~ 493 (601)
+++ | +|+|+ ++|+..... ++..+ +.|+|+|+|+++.+ +
T Consensus 333 K~~------~-----------------Gh~G~-----n~pV~~~~~---------~~v~i-tsqnHg~aVd~~sL----p 370 (415)
T PLN02771 333 KMK------F-----------------GHHGG-----NHPVRNNRT---------GRVEI-SAQNHNYAVDPASL----P 370 (415)
T ss_pred ECC------C-----------------Ccccc-----eEEEEECCC---------CCEEE-EecCHHHhhccccC----C
Confidence 865 2 46665 788765432 23333 67899999987654 5
Q ss_pred CCeEEEEEe-CCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHH
Q 007496 494 AGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 539 (601)
Q Consensus 494 ~Gl~~~g~s-~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF 539 (601)
.++++++++ +|+. +|+++++++|+| |||||||..++|+|..++|
T Consensus 371 ~~~~vt~~nlnDgt-vegi~~~~~pi~-gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 371 EGVEVTHVNLNDGS-CAGLAFPALNVM-SLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred CceEEEEEeCCCCc-EEEEEECCCCEE-EEEcCCCCCCCCCcChhhC
Confidence 689999998 4666 999999999965 9999999999999999887
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.98 E-value=1.8e-32 Score=305.93 Aligned_cols=302 Identities=18% Similarity=0.243 Sum_probs=236.2
Q ss_pred EEeeeeeeeecCCCccccCC-ccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccH
Q 007496 177 LIHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPL 255 (601)
Q Consensus 177 ~ih~~~vp~~~~~~e~ktkp-tq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl 255 (601)
.|-|---|.|+.-|-- +++ -+-..+.++|-+|++.+||+++.+.-.++|++.-||-.|+.++.|+++.||||| +|+.
T Consensus 49 QiLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk 126 (1435)
T KOG0370|consen 49 QILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTK 126 (1435)
T ss_pred eEEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHH
Confidence 4445556777766655 444 445667789999999999999999999999999999999999999999999999 9999
Q ss_pred HHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhcC-------CCCceEEEEEcccCCCcchHHHHHHHHHHccccce
Q 007496 256 LLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLR 328 (601)
Q Consensus 256 ~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~~-------~~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~ 328 (601)
.|||||.|-+-+..-+-+..-..|+ -.+++..++. ..+..+|+.+ +++ .+.++++.|...|+++.
T Consensus 127 ~lReqGSmLgkl~~e~~~~~~vdpn---~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~RGa~vt 198 (1435)
T KOG0370|consen 127 KLREQGSMLGKLSIEKSPVLFVDPN---KRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKRGAEVT 198 (1435)
T ss_pred HHHhcCcceeEEEecCCCCcccCCC---cccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHhCceEE
Confidence 9999999965543222110000000 0345555543 2456789999 466 77899999999999976
Q ss_pred eEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 329 KKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 329 vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
+ +.|--. +. + .++|||+++||||+|.. +..+..++..++.++|+||||+|||+++.+
T Consensus 199 V---vPw~~~--i~---------------~--~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 199 V---VPWDYP--IA---------------K--EEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred E---ecCCcc--cc---------------c--cccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 6 345221 10 1 38999999999999984 677888999988889999999999999999
Q ss_pred hccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhh
Q 007496 408 FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDM 487 (601)
Q Consensus 408 fgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~ 487 (601)
.|+++++|+ | +++|. |+||....+ ++..| ++|||+|+|+++.
T Consensus 257 aGakT~KmK------y-----------------GNRGh-----NiP~~~~~t---------Grc~I-TSQNHGYAVD~~t 298 (1435)
T KOG0370|consen 257 AGAKTYKMK------Y-----------------GNRGH-----NIPCTCRAT---------GRCFI-TSQNHGYAVDPAT 298 (1435)
T ss_pred hCCceEEee------c-----------------cccCC-----CccceeccC---------ceEEE-EecCCceeecccc
Confidence 999999988 3 35564 778865443 57777 7999999999876
Q ss_pred HhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhh
Q 007496 488 IARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTL 553 (601)
Q Consensus 488 v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~ 553 (601)
+ +.|++.+-.+.+....|+|.|...||| ++|||||.+++|.|...+|+-|+....+.+...
T Consensus 299 L----p~gWk~lFvN~NDgSNEGI~Hss~P~f-SvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~ 359 (1435)
T KOG0370|consen 299 L----PAGWKPLFVNANDGSNEGIMHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKSKSTP 359 (1435)
T ss_pred c----cCCCchheeecccCCCceEecCCCCce-eeecCCcCCCCCcchHHHHHHHHHHHHHHhcCC
Confidence 5 578887777754444899999999987 999999999999999999999999987655433
No 17
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.94 E-value=1.1e-26 Score=225.28 Aligned_cols=181 Identities=29% Similarity=0.447 Sum_probs=135.1
Q ss_pred HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCC
Q 007496 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRI 392 (601)
Q Consensus 314 ~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg-~eg~i~aik~are~~i 392 (601)
.++.++|++.|+++ ++.|++++.. ..++.+.++|||+|+||++++. .+..+.+++++++.++
T Consensus 11 ~~l~~~l~~~~~~~----~v~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDV----EVVRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEE----EEEETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeE----EEEECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 37788888887654 4567665311 1112478999999999999988 7899999999999999
Q ss_pred CEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhccCCcee
Q 007496 393 PYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF 472 (601)
Q Consensus 393 P~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~ 472 (601)
|+||||+|||+|+.++|++|...+ ..+++||++.+...+. +.++..+ ...
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~----------------------~~~~~g~~~~~~~~~~-----~~~~~~~---~~~ 123 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSP----------------------EKPHHGGNIPISETPE-----DPLFYGL---PES 123 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEE----------------------SEEEEEEEEEEEEEEE-----HGGGTTS---TSE
T ss_pred EEEEEeehhhhhHHhcCCcccccc----------------------cccccccccccccccc-----ccccccc---ccc
Confidence 999999999999999999986422 1245676554322211 1233332 235
Q ss_pred EeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007496 473 IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 545 (601)
Q Consensus 473 I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~a 545 (601)
...++.|+|+|++. .+.+.|++++|++.++..++++...++| ++|+|||||+++++.+...|+..|++|
T Consensus 124 ~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~~ 192 (192)
T PF00117_consen 124 FKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLKA 192 (192)
T ss_dssp EEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHHH
T ss_pred cccccccceeeecc---cccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEeC
Confidence 56789999999975 2237899999999887448999999999 679999999999998777776666664
No 18
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=7.7e-26 Score=220.55 Aligned_cols=190 Identities=26% Similarity=0.332 Sum_probs=135.1
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECC-C-CCCC
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpG-G-fG~r 375 (601)
++|+|| ||+.. +-.|+.+||+++|+++.+. ++| +.+.++|+||+|| | |++.
T Consensus 2 ~~i~II-Dyg~G--NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGSG--NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCcc--hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 589999 69855 8899999999999876442 223 5688999999999 4 4442
Q ss_pred --c--hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCC-----CCCCeeeeCCC-CCcccCCC
Q 007496 376 --G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 445 (601)
Q Consensus 376 --g--~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~-----~~~pvi~~mpe-~~~~h~Gg 445 (601)
. ..+.+++++.+.+.++|+||||||||+|. + .|+|.+.. .++.|+.+-++ .+++||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf-e-----------~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF-E-----------RSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh-h-----------cccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 1 13678889888888999999999999995 2 35555442 36778877766 68999999
Q ss_pred ceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEccc
Q 007496 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFH 525 (601)
Q Consensus 446 tmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFH 525 (601)
+. +.+.++++++..+-.+ . +.++.|+|.+.+.. .-.+++.++.|...-++-.+ .+++|+|||
T Consensus 123 N~------l~~~~~~~l~~gi~~~-~--~~YFVHSY~~~~~~-------~~~v~~~~~YG~~f~AaV~k--~N~~g~QFH 184 (204)
T COG0118 123 NQ------VEFVRGHPLFKGIPDG-A--YFYFVHSYYVPPGN-------PETVVATTDYGEPFPAAVAK--DNVFGTQFH 184 (204)
T ss_pred ce------eeccCCChhhcCCCCC-C--EEEEEEEEeecCCC-------CceEEEeccCCCeeEEEEEe--CCEEEEecC
Confidence 53 3344444566665432 2 46899999998621 11255666666433333223 347799999
Q ss_pred CCCcCCCCCchHHHHHHHHHH
Q 007496 526 PEYKSRPGKPSPLFLGLIAAA 546 (601)
Q Consensus 526 PE~ss~p~~p~pLF~~Fv~aa 546 (601)
||+|+.- +..++++|++.+
T Consensus 185 PEKSg~~--Gl~lL~NFl~~~ 203 (204)
T COG0118 185 PEKSGKA--GLKLLKNFLEWI 203 (204)
T ss_pred cccchHH--HHHHHHHHHhhc
Confidence 9999886 689999998753
No 19
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.93 E-value=2.8e-25 Score=214.94 Aligned_cols=176 Identities=24% Similarity=0.401 Sum_probs=128.6
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-hh
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg-~e 378 (601)
|+++ +|+. . .+++++|+.+|+.+.+ ...+.. ++ .....++|||+++||+|++. ..
T Consensus 1 i~i~-d~g~---~-~~~~~~l~~~G~~~~~----~~~~~~-~~--------------~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFGV---K-HNILRELLKRGCEVTV----VPYNTD-AE--------------EILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecCc---H-HHHHHHHHHCCCeEEE----EECCCC-HH--------------HHhhcCCCEEEECCCCCChhHhH
Confidence 5677 5773 2 4789999999877543 222211 10 01235799999999999864 36
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEcc
Q 007496 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (601)
Q Consensus 379 g~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 458 (601)
..++.++++.++++|+||||+|||+|+.++|++|..++. ++.|. .+++....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF-----------------------GHRGS-----NHPVKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC-----------------------CCCCC-----ceeeEEcC
Confidence 677889999999999999999999999999999865321 12232 34544322
Q ss_pred CCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeC-CCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 459 ~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~-dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
. ++.. ..+++|+|+++++.+ ++++++++++. ++. +|+++++++|+ +|+|||||+..++.+..+
T Consensus 109 ~---------~~~~-~v~~~H~~~v~~~~l----p~~~~v~a~s~~~~~-i~a~~~~~~~i-~GvQfHPE~~~~~~~~~~ 172 (178)
T cd01744 109 T---------GRVY-ITSQNHGYAVDPDSL----PGGLEVTHVNLNDGT-VEGIRHKDLPV-FSVQFHPEASPGPHDTEY 172 (178)
T ss_pred C---------CCcE-EEEcCceEEEccccc----CCceEEEEEECCCCc-EEEEEECCCCe-EEEeeCCCCCCCCCCchH
Confidence 2 1112 256789999986554 56899999985 555 99999999995 599999999999888899
Q ss_pred HHHHHH
Q 007496 538 LFLGLI 543 (601)
Q Consensus 538 LF~~Fv 543 (601)
||.+|+
T Consensus 173 lf~~f~ 178 (178)
T cd01744 173 LFDEFL 178 (178)
T ss_pred hHhhhC
Confidence 999995
No 20
>PLN02335 anthranilate synthase
Probab=99.93 E-value=8e-25 Score=219.40 Aligned_cols=198 Identities=17% Similarity=0.234 Sum_probs=134.2
Q ss_pred CCceEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC
Q 007496 295 HEPVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (601)
Q Consensus 295 ~~~v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG 373 (601)
+...+|.+|+.|. +|. ++.+.|+..|+++.+. .+ +..++++ -...++|||||+||||
T Consensus 16 ~~~~~ilviD~~d----sft~~i~~~L~~~g~~~~v~---~~-~~~~~~~--------------~~~~~~d~iVisgGPg 73 (222)
T PLN02335 16 KQNGPIIVIDNYD----SFTYNLCQYMGELGCHFEVY---RN-DELTVEE--------------LKRKNPRGVLISPGPG 73 (222)
T ss_pred CccCcEEEEECCC----CHHHHHHHHHHHCCCcEEEE---EC-CCCCHHH--------------HHhcCCCEEEEcCCCC
Confidence 3456899997444 554 7899999999876542 22 1111110 0124789999999999
Q ss_pred CCchhHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCce
Q 007496 374 NRGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (601)
Q Consensus 374 ~rg~eg~-i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 452 (601)
++...+. ...++ +.+.++|+||||||||+|+.++|++|...+ ++ ...|+ ..
T Consensus 74 ~p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~------~~----------------~~~G~-----~~ 125 (222)
T PLN02335 74 TPQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSP------FG----------------VMHGK-----SS 125 (222)
T ss_pred ChhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCC------Cc----------------cccCc-----ee
Confidence 9864432 22332 234579999999999999999999885432 10 01222 23
Q ss_pred eEEEccC--CchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcC
Q 007496 453 RTYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (601)
Q Consensus 453 ~v~l~~~--~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss 530 (601)
++...+. ++++..+.. . ....+.|+|+|+++.++ +.+++++|+++++. +++++++++|+++|||||||...
T Consensus 126 ~v~~~~~~~~~Lf~~l~~-~--~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~~~ 198 (222)
T PLN02335 126 PVHYDEKGEEGLFSGLPN-P--FTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPESII 198 (222)
T ss_pred eeEECCCCCChhhhCCCC-C--CEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCCCC
Confidence 4433321 145554431 2 23577899999765432 33499999998887 99999999998889999999986
Q ss_pred CCCCchHHHHHHHHHHhcch
Q 007496 531 RPGKPSPLFLGLIAAACGQL 550 (601)
Q Consensus 531 ~p~~p~pLF~~Fv~aa~~~~ 550 (601)
.+ ++..+|++|++++.++.
T Consensus 199 ~~-~g~~i~~nF~~~~~~~~ 217 (222)
T PLN02335 199 TT-EGKTIVRNFIKIIEKKE 217 (222)
T ss_pred Ch-hHHHHHHHHHHHHHhhc
Confidence 65 68999999999876544
No 21
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=7.1e-25 Score=214.15 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=128.1
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh-ccCCCEEEECCCCCCCch
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlvpGGfG~rg~ 377 (601)
|.+|+.|. +|. ++++.|+..|+++.+ +.| +..+++ +. ..++||||++||||++..
T Consensus 2 il~idn~D----sft~nl~~~l~~~g~~v~v---~~~-~~~~~~---------------~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLIDNYD----SFTWNLYQYFCELGADVLV---KRN-DALTLA---------------DIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEEECCC----ccHHHHHHHHHHCCCcEEE---EeC-CCCCHH---------------HHHhcCCCEEEEcCCCCChHH
Confidence 78898776 454 688999998876544 122 211110 11 237899999999999864
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 eg-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
.+ .+..++. .+.++|+||||||||+|+.++|++|.+... ++.|+ ..++..
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-----------------------~~~g~-----~~~v~~ 109 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAK-----------------------VMHGK-----TSPITH 109 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCC-----------------------cccCC-----ceEEEE
Confidence 33 3445554 457899999999999999999999965331 12243 334444
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCch
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~ 536 (601)
... +++..+. .. ....+.|+|.|++..+ +.+++++|+++++. ++++++.++| ++|||||||..+.+ ++.
T Consensus 110 ~~~-~l~~~~~-~~--~~v~~~H~~~v~~~~l----p~~~~v~a~~~~~~-i~a~~~~~~~-i~GvQfHPE~~~t~-~G~ 178 (187)
T PRK08007 110 NGE-GVFRGLA-NP--LTVTRYHSLVVEPDSL----PACFEVTAWSETRE-IMGIRHRQWD-LEGVQFHPESILSE-QGH 178 (187)
T ss_pred CCC-CcccCCC-CC--cEEEEcchhEEccCCC----CCCeEEEEEeCCCc-EEEEEeCCCC-EEEEEeCCcccCCc-chH
Confidence 333 4554442 12 2356778998865433 67899999999987 9999999998 56999999997765 578
Q ss_pred HHHHHHHH
Q 007496 537 PLFLGLIA 544 (601)
Q Consensus 537 pLF~~Fv~ 544 (601)
.+|++|++
T Consensus 179 ~il~nFl~ 186 (187)
T PRK08007 179 QLLANFLH 186 (187)
T ss_pred HHHHHHhh
Confidence 99999985
No 22
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.92 E-value=3.4e-24 Score=208.68 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=129.7
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhcc--CCCEEEECCCCCCCch
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlvpGGfG~rg~ 377 (601)
|++| ||+.. .-.++.++|+..|+++.+ .+.+++ + +.+. ++||||+|||+++...
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~----~~~~~~----------~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSEL----VPNTTP----------L-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEE----EeCCCC----------H-------HHHhhcCCCEEEECCCCCCcCc
Confidence 5678 47643 334788999999987543 232221 0 1222 3569999999988765
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
......++.+.+.++|+||||+|||+|+.++|++|...+. +++| ..++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-----------------------~~~g------~~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-----------------------REYG------KAELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-----------------------ccce------eEEEEEe
Confidence 5556778888899999999999999999999998854221 2334 3455554
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
+.+.++..+. . .+...+.|+|.+. .+ +.++++++.++++. +++++.++.|+ +|+|||||++.++ ++..
T Consensus 108 ~~~~l~~~~~-~--~~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~~-~g~QfHPE~~~~~-~g~~ 175 (188)
T TIGR00888 108 DEDDLFRGLP-D--ESTVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKPI-YGVQFHPEVTHTE-YGNE 175 (188)
T ss_pred cCCHhhcCCC-C--CcEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCCE-EEEeeCCccCCCh-hhHH
Confidence 4433333332 1 2345667888874 23 67899999988765 99999999884 6999999998775 4789
Q ss_pred HHHHHHHHHhc
Q 007496 538 LFLGLIAAACG 548 (601)
Q Consensus 538 LF~~Fv~aa~~ 548 (601)
+|++|+.++++
T Consensus 176 i~~~f~~~~~~ 186 (188)
T TIGR00888 176 LLENFVYDVCG 186 (188)
T ss_pred HHHHHHHHhhC
Confidence 99999996544
No 23
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.92 E-value=3.8e-24 Score=208.80 Aligned_cols=185 Identities=21% Similarity=0.269 Sum_probs=126.5
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
|.|++.| |+|. ++.+.|+..|+++.+. .|...+ .+ ..+.+ ++||||++||||++...
T Consensus 2 iliid~~----d~f~~~i~~~l~~~g~~~~v~---~~~~~~-~~-------------~~~~~-~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNY----DSFTYNLVQYLGELGAEVVVY---RNDEIT-LE-------------EIEAL-NPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECC----CchHHHHHHHHHHCCCcEEEE---ECCCCC-HH-------------HHHhC-CCCEEEEcCCCCChHHc
Confidence 7888644 4665 7899999999886542 221111 00 01223 48999999999998532
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 379 -g~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
.....++. ...++|+||||+|||+|+.++|++|...+. .+.|+ .+++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~-----------------------~~~g~-----~~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKE-----------------------IMHGK-----TSPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCC-----------------------cccCc-----eeEEE-e
Confidence 23344554 356799999999999999999999865321 12233 23343 2
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
.+++++..+.. . ....|.|+|.|.+.. + +++++++++++++. +|+++++++| ++|+|||||+...+ ++.+
T Consensus 110 ~~~~l~~~~~~-~--~~v~~~H~~~v~~~~---l-p~~~~~la~s~~~~-i~a~~~~~~~-~~gvQfHPE~~~~~-~g~~ 179 (189)
T PRK05670 110 DGSGIFAGLPN-P--FTVTRYHSLVVDRES---L-PDCLEVTAWTDDGE-IMGVRHKELP-IYGVQFHPESILTE-HGHK 179 (189)
T ss_pred CCCchhccCCC-C--cEEEcchhheecccc---C-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeeCCCcCCCc-chHH
Confidence 22233333321 2 345788999986422 3 67899999998776 9999999999 56999999997654 6889
Q ss_pred HHHHHHHHH
Q 007496 538 LFLGLIAAA 546 (601)
Q Consensus 538 LF~~Fv~aa 546 (601)
+|++|++++
T Consensus 180 i~~~F~~~~ 188 (189)
T PRK05670 180 LLENFLELA 188 (189)
T ss_pred HHHHHHHhh
Confidence 999999875
No 24
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=3.4e-24 Score=207.93 Aligned_cols=188 Identities=22% Similarity=0.303 Sum_probs=136.0
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
++|.+|++|.++ .| ++++.|+..|+++.+. .+ + ++.. .+-...++|+|+|++|||.|..
T Consensus 2 ~~IL~IDNyDSF--ty-NLv~yl~~lg~~v~V~---rn-d--~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSF--TY-NLVQYLRELGAEVTVV---RN-D--DISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccch--HH-HHHHHHHHcCCceEEE---EC-C--ccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 579999988755 22 7888898888665442 22 1 1111 0112347899999999999986
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 eg-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
.| ..++++.+ ..++|+||||||||.++.+||++|...+.. -.|-+ ....
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~-----------------------~HGK~------s~i~ 110 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEP-----------------------MHGKT------SIIT 110 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCC-----------------------cCCee------eeee
Confidence 66 66778877 668999999999999999999999653311 11221 1112
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCch
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~ 536 (601)
..++.+++.+.. ... ..|+ |+..++++.+ +..++++|++.|+..+++++++++|.+ |+|||||.--++. ++
T Consensus 111 h~g~~iF~glp~-~f~-v~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi~-gvQFHPESilT~~-G~ 181 (191)
T COG0512 111 HDGSGLFAGLPN-PFT-VTRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPIY-GVQFHPESILTEY-GH 181 (191)
T ss_pred cCCcccccCCCC-CCE-EEee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCCEE-EEecCCccccccc-hH
Confidence 223356666663 333 3677 8998887655 578999999988766999999999966 9999999887764 79
Q ss_pred HHHHHHHHH
Q 007496 537 PLFLGLIAA 545 (601)
Q Consensus 537 pLF~~Fv~a 545 (601)
.++.+|++.
T Consensus 182 ~il~Nfl~~ 190 (191)
T COG0512 182 RILENFLRL 190 (191)
T ss_pred HHHHHHHhh
Confidence 999999875
No 25
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.92 E-value=2.3e-24 Score=215.12 Aligned_cols=166 Identities=25% Similarity=0.445 Sum_probs=128.8
Q ss_pred HHhccCCCEEEECCC-------CCCC-----------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCC
Q 007496 357 WKLLKGADGILVPGG-------FGNR-----------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (601)
Q Consensus 357 ~~~L~~~DGIlvpGG-------fG~r-----------g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da 418 (601)
.+.+...|||++||| +|.. .....+.++|.|++.++|+||||.|||+|+++||++.+. +.
T Consensus 55 ~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q--~i 132 (243)
T COG2071 55 RQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ--DI 132 (243)
T ss_pred HHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh--hh
Confidence 366789999999999 2321 112467889999999999999999999999999999853 22
Q ss_pred CCCccCCCCCCCeeeeCCCCCcccC-CCceeeCceeEEEccCCchhhhccCCc-eeEeeeeceeeeeChhhHhhhccCCe
Q 007496 419 NSTEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTYFQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAGL 496 (601)
Q Consensus 419 ~S~Ef~~~~~~pvi~~mpe~~~~h~-GgtmrLG~~~v~l~~~~s~l~~lyg~~-~~I~erhrHrYeVn~~~v~~le~~Gl 496 (601)
..... . ..|+ +....+..|++.+.++ |.++++++.. ..|+..|+ +.+++| ..||
T Consensus 133 ~~~~~----------~-----~~H~~~~~~~~~~H~V~i~~~-s~La~i~g~~~~~VNS~Hh-------QaIk~L-a~~L 188 (243)
T COG2071 133 SEQPG----------H-----IDHRQPNPVHIESHEVHIEPG-SKLAKILGESEFMVNSFHH-------QAIKKL-APGL 188 (243)
T ss_pred hcccc----------c-----ccccCCCCcccceeEEEecCC-ccHHHhcCccceeecchHH-------HHHHHh-CCCc
Confidence 11110 0 0122 2222344889999998 8999999754 46666664 788988 8899
Q ss_pred EEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCC-chHHHHHHHHHHhcc
Q 007496 497 SFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK-PSPLFLGLIAAACGQ 549 (601)
Q Consensus 497 ~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~-p~pLF~~Fv~aa~~~ 549 (601)
+++|+++||. ||+||+++++|++|||||||+...... ...||+.|++++..+
T Consensus 189 ~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 189 VVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred EEEEECCCCc-EEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 9999999998 999999999999999999999988763 357999999998764
No 26
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.91 E-value=1.6e-23 Score=204.70 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=129.4
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
+||.+|+.|.+. .| ++.++|+.+|.++.+. ..+. .+ + +.+..+|||||+||+|.+..
T Consensus 2 ~~iliid~~dsf--~~-~i~~~l~~~g~~~~v~----~~~~--~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--TF-NLVDLIRKLGVPMQVV----NVED--LD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--HH-HHHHHHHHcCCcEEEE----ECCc--cC-------h-------hHhccCCEEEECCCCCChHH
Confidence 689999866644 33 5999999999876542 2111 11 1 34678999999999997643
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 -eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
......++. .+.++|+||||||||+|+.++|++|.+++. ..|.++ .++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~----------------------~~~g~~------~~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN----------------------VRHGQQ------RPLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC----------------------CccCce------EEEEE
Confidence 233445554 456899999999999999999999854321 123222 34444
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCch
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~ 536 (601)
.+++.++..+- .. ....+.|+|.+.+..+ +.++..++.+.++. ++++++.++| ++|+|||||..+.+. +.
T Consensus 110 ~~~~~l~~~~~-~~--~~v~~~Hs~~v~~~~l----p~~l~~~a~~~~~~-i~a~~~~~~p-i~GvQFHPE~~~~~~-g~ 179 (190)
T PRK06895 110 RSNSPLFDGLP-EE--FNIGLYHSWAVSEENF----PTPLEITAVCDENV-VMAMQHKTLP-IYGVQFHPESYISEF-GE 179 (190)
T ss_pred CCCChhhhcCC-Cc--eEEEcchhheeccccc----CCCeEEEEECCCCc-EEEEEECCCC-EEEEEeCCCcCCCcc-hH
Confidence 44434444442 22 3456789999875432 46788999887776 9999999999 559999999977774 67
Q ss_pred HHHHHHHHH
Q 007496 537 PLFLGLIAA 545 (601)
Q Consensus 537 pLF~~Fv~a 545 (601)
.++++|++.
T Consensus 180 ~il~nf~~~ 188 (190)
T PRK06895 180 QILRNWLAI 188 (190)
T ss_pred HHHHHHHhh
Confidence 899999864
No 27
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.91 E-value=1.3e-23 Score=205.30 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=129.6
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
|.+|+.|. +|. ++++.|+..|+++.+ ...+..+++ .+ +. .++|||+|+||||++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~v~v----~~~~~~~~~---------~~----~~-~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYD----SFTYNLVQYFCELGAEVVV----KRNDSLTLQ---------EI----EA-LLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCc----CHHHHHHHHHHHcCCceEE----EECCCCCHH---------HH----Hh-cCCCEEEEcCCCCChhhc
Confidence 77887555 665 788999998877543 221111111 00 11 268999999999998642
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 379 -g~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
.....++++ ..++|+||||+|||+++.++|++|.+.+. ...|+ .+++...
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~g~-----~~~v~~~ 110 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANT-----------------------VMHGK-----TSEIEHN 110 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCC-----------------------ccccc-----eEEEEEC
Confidence 235677777 57899999999999999999999965321 11232 3345544
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
.. +++..+++ . ....+.|+|.|+++.+ +++++++|++.++..+++++++++|+ +|+|||||....+ .+..
T Consensus 111 ~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~i-~gvQfHPE~~~t~-~G~~ 180 (188)
T TIGR00566 111 GA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLPL-EGVQFHPESILSE-QGHQ 180 (188)
T ss_pred CC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCCE-EEEEeCCCccCCc-ccHH
Confidence 43 55666653 3 3456789999875443 67899999988753599999999995 5999999997775 6889
Q ss_pred HHHHHHH
Q 007496 538 LFLGLIA 544 (601)
Q Consensus 538 LF~~Fv~ 544 (601)
+|++|++
T Consensus 181 il~nfl~ 187 (188)
T TIGR00566 181 LLANFLH 187 (188)
T ss_pred HHHHHHh
Confidence 9999985
No 28
>CHL00101 trpG anthranilate synthase component 2
Probab=99.91 E-value=9.5e-24 Score=206.52 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=126.9
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHH-hccCCCEEEECCCCCCCch
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIlvpGGfG~rg~ 377 (601)
|.+++.|. +|. ++.+.|+..|+++.+. +..... +.+ ...++|||||+||||++..
T Consensus 2 iliid~~d----sft~~l~~~l~~~g~~~~v~------~~~~~~-------------~~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYD----SFTYNLVQSLGELNSDVLVC------RNDEID-------------LSKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCC----chHHHHHHHHHhcCCCEEEE------ECCCCC-------------HHHHhhCCCCEEEECCCCCChHH
Confidence 77886444 564 6889999998776431 111110 001 1257999999999999764
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
.+....+..+.+.++|+||||+|||+|+.++|++|.+.+. +..|++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-----------------------~~~g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-----------------------PMHGKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-----------------------cccCce-----eeEe-e
Confidence 4433344445678999999999999999999999965331 112332 1121 2
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
...+++..+. .. ....+.|+|.|++.. + +++++++|+++++. +++++++++||++|+|||||.+..+ ....
T Consensus 110 ~~~~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~ 180 (190)
T CHL00101 110 NHDDLFQGLP-NP--FTATRYHSLIIDPLN---L-PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTT-HGQQ 180 (190)
T ss_pred CCcHhhccCC-Cc--eEEEcchhheeeccc---C-CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCCh-hHHH
Confidence 2223343332 12 345788999986532 3 67899999998887 9999999999788999999987554 5788
Q ss_pred HHHHHHHHH
Q 007496 538 LFLGLIAAA 546 (601)
Q Consensus 538 LF~~Fv~aa 546 (601)
+|++|++.+
T Consensus 181 l~~nf~~~~ 189 (190)
T CHL00101 181 ILRNFLSLS 189 (190)
T ss_pred HHHHHHhhh
Confidence 999998753
No 29
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.91 E-value=2.1e-23 Score=205.34 Aligned_cols=187 Identities=20% Similarity=0.257 Sum_probs=127.8
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
|.+|+.|. +|. ++.+.|+..|.++.+. ..+...++ +. ...++||||++||||++...
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~v~v~----~~~~~~~~------------~~--~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYD----SFTFNLVQFLGELGQELVVK----RNDEVTIS------------DI--ENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCC----ccHHHHHHHHHHCCCcEEEE----eCCCCCHH------------HH--hhCCCCEEEECCCCCChHhC
Confidence 77887665 554 6899999998775442 11111110 00 12478999999999998643
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 379 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 379 g-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
+ ....++. .+.++|+||||||||+|+.++|++|.+.+. .+.|++ .++..
T Consensus 60 ~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-----------------------~~~G~~-----~~i~~- 109 (195)
T PRK07649 60 GISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAER-----------------------LMHGKT-----SLMHH- 109 (195)
T ss_pred CCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-----------------------cccCCe-----EEEEE-
Confidence 3 3344443 346899999999999999999999965331 122432 22322
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
.+.+++..+.. . ....+.|++.+.++. + ++++++++.++++. +++++++++| ++|+|||||...++ ++..
T Consensus 110 ~~~~lf~~~~~-~--~~v~~~H~~~v~~~~---l-p~~~~~~a~s~~~~-v~a~~~~~~~-i~gvQFHPE~~~t~-~g~~ 179 (195)
T PRK07649 110 DGKTIFSDIPN-P--FTATRYHSLIVKKET---L-PDCLEVTSWTEEGE-IMAIRHKTLP-IEGVQFHPESIMTS-HGKE 179 (195)
T ss_pred CCChhhcCCCC-C--CEEEEechheEeccc---C-CCCeEEEEEcCCCc-EEEEEECCCC-EEEEEECCCCCCCc-cHHH
Confidence 22245555542 2 235677888875332 3 67899999998887 9999999999 55999999987665 5789
Q ss_pred HHHHHHHHHhc
Q 007496 538 LFLGLIAAACG 548 (601)
Q Consensus 538 LF~~Fv~aa~~ 548 (601)
+|++|++.+..
T Consensus 180 il~nfl~~~~~ 190 (195)
T PRK07649 180 LLQNFIRKYSP 190 (195)
T ss_pred HHHHHHHHhHh
Confidence 99999987754
No 30
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.91 E-value=8.4e-23 Score=208.70 Aligned_cols=168 Identities=26% Similarity=0.352 Sum_probs=117.1
Q ss_pred HhccCCCEEEECCCCCCC-----------ch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCC
Q 007496 358 KLLKGADGILVPGGFGNR-----------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420 (601)
Q Consensus 358 ~~L~~~DGIlvpGGfG~r-----------g~------eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S 420 (601)
+.++.+||||++||+.+- .. ...++++++|.+.++|+||||+|||+|+++||+++.. +..+
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~~~ 134 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KLCE 134 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--cccc
Confidence 456789999999985421 11 2356889999999999999999999999999999963 2100
Q ss_pred -CccCCCCCCCeeeeCCCCC-cccCCCceeeCceeEEEccCCchhhhccCCce--eEeeeeceeeeeChhhHhhhccCCe
Q 007496 421 -TEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLENAGL 496 (601)
Q Consensus 421 -~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~--~I~erhrHrYeVn~~~v~~le~~Gl 496 (601)
.+.....+.+ +.. ..+. .+.+.+.+.++ +++..++++.. .++.+| . +.++.+ +.|+
T Consensus 135 ~~~~~~h~~~~------~~~~~~~~-----~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H--~-----q~V~~l-~~gl 194 (254)
T PRK11366 135 QPELLEHREDP------ELPVEQQY-----APSHEVQVEEG-GLLSALLPECSNFWVNSLH--G-----QGAKVV-SPRL 194 (254)
T ss_pred cccccccccCC------cccccccc-----CCceEEEECCC-CcHHHhcCCCceEEeehHH--H-----HHHhhc-ccce
Confidence 0000000000 000 0001 12467777776 78888874322 343334 2 556666 8899
Q ss_pred EEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCc-hHHHHHHHHHHhc
Q 007496 497 SFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP-SPLFLGLIAAACG 548 (601)
Q Consensus 497 ~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p-~pLF~~Fv~aa~~ 548 (601)
+++|+++||. +|++|++++||++|||||||+...+... ..||++|+++|..
T Consensus 195 ~v~A~s~dg~-ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~ 246 (254)
T PRK11366 195 RVEARSPDGL-VEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQH 246 (254)
T ss_pred EEEEEcCCCc-EEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHH
Confidence 9999999997 9999999999989999999998775433 5799999999875
No 31
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=3.7e-23 Score=202.11 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=119.3
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc-cCCCEEEECCCCCCCch
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGNRGV 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L-~~~DGIlvpGGfG~rg~ 377 (601)
|.+|+.|. +|. ++++.|+..|+++.+. .| +...+ .+.. .++||||++||||++..
T Consensus 2 il~id~~d----sf~~nl~~~l~~~~~~~~v~---~~-~~~~~---------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCELGTEVMVK---RN-DELQL---------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEEE---eC-CCCCH---------------HHHHhcCCCeEEEcCCCCChHh
Confidence 77887555 665 6889999888775441 22 11111 0111 37899999999999854
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 eg-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
.+ ....++. .+.++|+||||+|||+|+.++|++|...+. .| .|+ ..+..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~---~~--------------------~G~------~~~~~ 108 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ---VM--------------------HGK------TSAIC 108 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc---ce--------------------ecc------eEEEE
Confidence 33 2344443 467899999999999999999999964320 11 133 12222
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCC---eEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~---~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
...++++..+. .. ....+.|+|.+++.. + +.++.++|+++++. .++++++++.|+ +|||||||+.+.+
T Consensus 109 ~~~~~lf~~l~-~~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~i-~GvQfHPE~~~~~- 179 (191)
T PRK06774 109 HSGQGVFRGLN-QP--LTVTRYHSLVIAADS---L-PGCFELTAWSERGGEMDEIMGIRHRTLPL-EGVQFHPESILSE- 179 (191)
T ss_pred ecCchhhcCCC-CC--cEEEEeCcceeeccC---C-CCCeEEEEEeCCCCCcceEEEEEeCCCCE-EEEEECCCcCCCc-
Confidence 22223444442 12 235677888886432 2 57899999987542 255677777775 5999999997776
Q ss_pred CchHHHHHHHH
Q 007496 534 KPSPLFLGLIA 544 (601)
Q Consensus 534 ~p~pLF~~Fv~ 544 (601)
++..+|++|++
T Consensus 180 ~G~~i~~nf~~ 190 (191)
T PRK06774 180 QGHQLLDNFLK 190 (191)
T ss_pred cHHHHHHHHhh
Confidence 57899999985
No 32
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.90 E-value=4.7e-23 Score=199.83 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=125.0
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
|.+++.|. .|. .+.+.|+.+|+++.+ +.| +..+ + ....+.++||||++||+|++...
T Consensus 1 il~~~~~~----~~~~~~~~~l~~~G~~~~~---~~~-~~~~-~-------------~~~~~~~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 1 ILLIDNYD----SFTYNLVQYLRELGAEVVV---VRN-DEIT-L-------------EELELLNPDAIVISPGPGHPEDA 58 (184)
T ss_pred CEEEeCCC----ccHHHHHHHHHHcCCceEE---EeC-CCCC-H-------------HHHhhcCCCEEEECCCCCCcccc
Confidence 34565444 554 577889999887654 222 2110 0 00135789999999999987554
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEcc
Q 007496 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (601)
Q Consensus 379 g~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 458 (601)
.....++.+.++++|+||||+|||+|+.++|++|...+. ...|+ .+++.+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 110 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPE-----------------------PMHGK-----TSEIHHDG 110 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCC-----------------------CCcCc-----eeEEEECC
Confidence 445555555567899999999999999999998854220 12233 34455443
Q ss_pred CCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHH
Q 007496 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 538 (601)
Q Consensus 459 ~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pL 538 (601)
+ +++..+.. .....+.|+|+|+..-. +.++++++.++++. +++++++++|+ +|+|||||+.+.+. ...|
T Consensus 111 ~-~~~~~~~~---~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~~-v~a~~~~~~~i-~gvQfHPE~~~~~~-g~~l 179 (184)
T cd01743 111 S-GLFKGLPQ---PFTVGRYHSLVVDPDPL----PDLLEVTASTEDGV-IMALRHRDLPI-YGVQFHPESILTEY-GLRL 179 (184)
T ss_pred C-ccccCCCC---CcEEEeCcEEEEecCCC----CceEEEEEeCCCCe-EEEEEeCCCCE-EEEeeCCCcCCCcc-hHHH
Confidence 3 44444431 23467889999864311 22488999988885 99999999995 59999999988875 8999
Q ss_pred HHHHH
Q 007496 539 FLGLI 543 (601)
Q Consensus 539 F~~Fv 543 (601)
|++|+
T Consensus 180 ~~~f~ 184 (184)
T cd01743 180 LENFL 184 (184)
T ss_pred HHhhC
Confidence 99994
No 33
>PRK00758 GMP synthase subunit A; Validated
Probab=99.90 E-value=9.2e-23 Score=197.98 Aligned_cols=179 Identities=25% Similarity=0.329 Sum_probs=122.1
Q ss_pred EEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCC-CEEEECCCCCCCch
Q 007496 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGV 377 (601)
Q Consensus 300 IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~-DGIlvpGGfG~rg~ 377 (601)
|++++ |.. .| .++.++|+.+|+++.+ +.+ +. ++ +.+.++ ||||+|||+.....
T Consensus 2 i~iid-~~~---~~~~~i~~~l~~~g~~~~~---~~~-~~----------~~-------~~l~~~~dgivi~Gg~~~~~~ 56 (184)
T PRK00758 2 IVVVD-NGG---QYNHLIHRTLRYLGVDAKI---IPN-TT----------PV-------EEIKAFEDGLILSGGPDIERA 56 (184)
T ss_pred EEEEE-CCC---chHHHHHHHHHHcCCcEEE---EEC-CC----------CH-------HHHhhcCCEEEECCCCChhhc
Confidence 78885 442 34 4788999999886432 111 11 01 345666 99999999832211
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
....+++++.++|+||||+|||+|+.++|++|...+. ++. |..++.+.
T Consensus 57 ---~~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~-----------------------~~~------g~~~i~~~ 104 (184)
T PRK00758 57 ---GNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY-----------------------GEY------ALVEVEIL 104 (184)
T ss_pred ---cccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC-----------------------cee------eeEEEEEc
Confidence 1233455567899999999999999999998854220 112 33455554
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchH
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~p 537 (601)
+.++++..+. .. ....+.|+|.+. .+ +.+++++|+++++. +++++.+++| ++|+|||||++..+ +...
T Consensus 105 ~~~~l~~~~~-~~--~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ 172 (184)
T PRK00758 105 DEDDILKGLP-PE--IRVWASHADEVK-----EL-PDGFEILARSDICE-VEAMKHKEKP-IYGVQFHPEVAHTE-YGEE 172 (184)
T ss_pred CCChhhhCCC-CC--cEEEeehhhhhh-----hC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEEcCCccCCCc-hHHH
Confidence 4434555432 22 234667777653 34 67899999999987 9999999988 56999999998774 5789
Q ss_pred HHHHHHHHHh
Q 007496 538 LFLGLIAAAC 547 (601)
Q Consensus 538 LF~~Fv~aa~ 547 (601)
||++|++.+.
T Consensus 173 l~~~f~~~~~ 182 (184)
T PRK00758 173 IFKNFLEICG 182 (184)
T ss_pred HHHHHHHHHc
Confidence 9999998754
No 34
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=1.5e-22 Score=201.85 Aligned_cols=196 Identities=20% Similarity=0.263 Sum_probs=134.2
Q ss_pred eEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc
Q 007496 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg 376 (601)
++|.+++.|. +|. ++.+.|+..|+++.+ ...+...+. ...+.+.++|||||+||++++.
T Consensus 1 ~~ilv~d~~~----~~~~~~~~~l~~~G~~~~~----~~~~~~~~~------------~~~~~~~~~dgliisGGp~~~~ 60 (214)
T PRK07765 1 MRILVVDNYD----SFVFNLVQYLGQLGVEAEV----WRNDDPRLA------------DEAAVAAQFDGVLLSPGPGTPE 60 (214)
T ss_pred CeEEEEECCC----cHHHHHHHHHHHcCCcEEE----EECCCcCHH------------HHHHhhcCCCEEEECCCCCChh
Confidence 4788887554 443 577889888887644 222221111 0113356899999999999875
Q ss_pred h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEE
Q 007496 377 V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (601)
Q Consensus 377 ~-eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 455 (601)
. ...+..++++.++++|+||||+|||+|+.++|++|.+.+. +..|+ .+++.
T Consensus 61 ~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~-----------------------~~~g~-----~~~v~ 112 (214)
T PRK07765 61 RAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE-----------------------LLHGK-----TSSVH 112 (214)
T ss_pred hcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC-----------------------CccCc-----eeEEE
Confidence 3 3356789999999999999999999999999999964220 11132 23344
Q ss_pred EccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCc
Q 007496 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 535 (601)
Q Consensus 456 l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p 535 (601)
+... +++..+.. .....+.|+|.|.++.+ +++++++++++++. +++++++++| ++|+|||||..... ++
T Consensus 113 ~~~~-~~~~~~~~---~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~-i~gvQfHPE~~~t~-~g 181 (214)
T PRK07765 113 HTGV-GVLAGLPD---PFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELP-IHGVQFHPESVLTE-GG 181 (214)
T ss_pred ECCC-ccccCCCC---ccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCC-EEEEeeCCCcccCc-ch
Confidence 4333 34444321 23357789998875433 67899999998887 9999999999 56999999987443 36
Q ss_pred hHHHHHHHHHHhcchhhh
Q 007496 536 SPLFLGLIAAACGQLDTL 553 (601)
Q Consensus 536 ~pLF~~Fv~aa~~~~~~~ 553 (601)
..++.+|+..| +....|
T Consensus 182 ~~~l~~f~~~~-~~~~~~ 198 (214)
T PRK07765 182 HRMLANWLTVC-GWAPDE 198 (214)
T ss_pred HHHHHHHHHHh-ccccch
Confidence 67888888654 444333
No 35
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.89 E-value=1.7e-22 Score=194.80 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=122.6
Q ss_pred EEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
|++++ |++ ++ .++.++|+.+|+.+.+ .+.+.. .+ ...+.++||||+|||+++...+
T Consensus 1 i~~iD-~g~---~~~~~~~~~l~~~G~~~~~----~~~~~~-~~--------------~~~~~~~dgvIl~Gg~~~~~~~ 57 (181)
T cd01742 1 ILILD-FGS---QYTHLIARRVRELGVYSEI----LPNTTP-LE--------------EIKLKNPKGIILSGGPSSVYEE 57 (181)
T ss_pred CEEEE-CCC---chHHHHHHHHHhcCceEEE----ecCCCC-hh--------------hhcccCCCEEEECCCccccccc
Confidence 56774 653 33 3688999999976433 222211 00 0246789999999998865433
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEcc
Q 007496 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (601)
Q Consensus 379 g~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 458 (601)
......+++++.++|+||||+|||+|+.++|++|.+.+. +++|+ .++.+.+
T Consensus 58 ~~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----------------------~~~G~------~~v~~~~ 108 (181)
T cd01742 58 DAPRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK-----------------------REYGK------AEIEIDD 108 (181)
T ss_pred ccchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC-----------------------CcceE------EEEEecC
Confidence 233456777788999999999999999999988854221 12343 3343333
Q ss_pred CCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHH
Q 007496 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 538 (601)
Q Consensus 459 ~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pL 538 (601)
++.++..+.. . ....+.|+|+| ..+ +.++++++.++++. ++++++++.| ++|+|||||++..+ ++..+
T Consensus 109 ~~~l~~~~~~-~--~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-i~a~~~~~~~-~~g~QfHPE~~~~~-~g~~l 176 (181)
T cd01742 109 SSPLFEGLPD-E--QTVWMSHGDEV-----VKL-PEGFKVIASSDNCP-VAAIANEEKK-IYGVQFHPEVTHTE-KGKEI 176 (181)
T ss_pred CChhhcCCCC-c--eEEEcchhhhh-----hhc-CCCcEEEEeCCCCC-EEEEEeCCCc-EEEEEcCCccccCc-ChHHH
Confidence 3234433321 2 33456788766 234 67899999998776 9999999878 56999999999875 67899
Q ss_pred HHHHH
Q 007496 539 FLGLI 543 (601)
Q Consensus 539 F~~Fv 543 (601)
|++|+
T Consensus 177 l~~f~ 181 (181)
T cd01742 177 LKNFL 181 (181)
T ss_pred HHhhC
Confidence 99984
No 36
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=5.4e-22 Score=194.48 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=123.5
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
|.+|+.|. +|. ++++.|+..|+.+.+. .+ +..++++ .. ..++|+|+++|||+++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~~~~~---~~-~~~~~~~-------------~~-~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYD----SFTYNLYQYFCELGAQVKVV---RN-DEIDIDG-------------IE-ALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCC----CcHHHHHHHHHHCCCcEEEE---EC-CCCCHHH-------------Hh-hCCCCEEEEeCCCCChHHC
Confidence 78898666 554 6889999988876441 11 1111110 01 1368999999999997543
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEc
Q 007496 379 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (601)
Q Consensus 379 g-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 457 (601)
+ ....++. .+.++|+||||||||+|+.++|++|.+.+. ...|++ +++...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-----------------------~~~G~~-----~~~~~~ 110 (193)
T PRK08857 60 GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQ-----------------------VMHGKT-----SPIRHT 110 (193)
T ss_pred cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-----------------------ceeCce-----EEEEEC
Confidence 2 3445554 467899999999999999999999865321 112331 223322
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeC--CCC--eEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 458 ~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~--dg~--~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
.. +++..+. .. ....+.|++.|.+.. + +++++++|+++ ++. .+++++++++|+| |+|||||....+
T Consensus 111 ~~-~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~-gvQfHPE~~~t~- 180 (193)
T PRK08857 111 GR-SVFKGLN-NP--LTVTRYHSLVVKNDT---L-PECFELTAWTELEDGSMDEIMGFQHKTLPIE-AVQFHPESIKTE- 180 (193)
T ss_pred CC-cccccCC-Cc--cEEEEccEEEEEcCC---C-CCCeEEEEEecCcCCCcceEEEEEeCCCCEE-EEeeCCCcCCCc-
Confidence 22 3444442 12 235677888886432 3 67899999886 432 4889999999965 999999998665
Q ss_pred CchHHHHHHHHH
Q 007496 534 KPSPLFLGLIAA 545 (601)
Q Consensus 534 ~p~pLF~~Fv~a 545 (601)
.+..+|++|++.
T Consensus 181 ~g~~i~~nFl~~ 192 (193)
T PRK08857 181 QGHQLLANFLAR 192 (193)
T ss_pred chHHHHHHHHhh
Confidence 489999999863
No 37
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.88 E-value=6e-22 Score=228.36 Aligned_cols=199 Identities=20% Similarity=0.284 Sum_probs=137.2
Q ss_pred CceEEEEEcccCCCcchHH-HHHHHHHHc-cccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC
Q 007496 296 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~-SIi~aL~~a-g~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG 373 (601)
..++|.+|+.|. +|. +++..|+.. +..+.+ .++..+.... +.+..+.++|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCC
Confidence 468999998554 665 778888776 333322 2333332211 1123467899999999999
Q ss_pred CCchhHHHHHHHHHHHc----CCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceee
Q 007496 374 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (601)
Q Consensus 374 ~rg~eg~i~aik~are~----~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrL 449 (601)
++..+..+..++.+++. ++|+||||||||+|+.++|++|...+. ++.|+
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-----------------------~~hG~---- 117 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-----------------------PKHGQ---- 117 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCC-----------------------CCcCe----
Confidence 99766666677777765 499999999999999999999854321 12343
Q ss_pred CceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCc
Q 007496 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 529 (601)
Q Consensus 450 G~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~s 529 (601)
.+.+..... .++..++. ....+.|+|.++++..+.+ .+.+++.+.++..+|+++++++|+| |||||||+.
T Consensus 118 -~~~v~~~~~-~lf~gl~~----~~v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~-GVQFHPE~~ 187 (742)
T TIGR01823 118 -VYEMHTNDA-AIFCGLFS----VKSTRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWF-GVQYHPESC 187 (742)
T ss_pred -EEEEEECCc-cccCCCCC----CceeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceE-EEEeCcccC
Confidence 233333222 34444442 2235669999876544322 2567777776666999999999976 999999998
Q ss_pred CCCCCchHHHHHHHHHHhcch
Q 007496 530 SRPGKPSPLFLGLIAAACGQL 550 (601)
Q Consensus 530 s~p~~p~pLF~~Fv~aa~~~~ 550 (601)
..+....+||++|++++....
T Consensus 188 ~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 188 CSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred CCCccHHHHHHHHHHHHHHhh
Confidence 888767999999999987654
No 38
>PLN02347 GMP synthetase
Probab=99.88 E-value=8.5e-22 Score=219.66 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=135.2
Q ss_pred EEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCCCC
Q 007496 299 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG~r 375 (601)
+|+++ ||++ .|. ++.++|+..|+.+.+. .|..+ . +.+ .++||||+||||++.
T Consensus 12 ~IlII-D~G~---~~t~~I~r~lrelgv~~~v~---p~~~~--~----------------~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGS---QYTHLITRRVRELGVYSLLL---SGTAS--L----------------DRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCC---cHHHHHHHHHHHCCCeEEEE---ECCCC--H----------------HHHhcCCCCEEEECCCCCcc
Confidence 79999 4774 554 8899999999875431 22111 0 222 278999999999765
Q ss_pred chh---H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCc
Q 007496 376 GVQ---G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (601)
Q Consensus 376 g~e---g-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~ 451 (601)
... . ....++++.+.++|+||||+|||+|+.++|++|.... . ..+| .
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~---~--------------------~e~G------~ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE---K--------------------QEYG------R 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC---C--------------------cccc------e
Confidence 321 1 1234566677899999999999999999999985421 0 1123 4
Q ss_pred eeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCC
Q 007496 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 452 ~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~ 531 (601)
.++.+..++.++..+.. ......++.|+|.+. .+ +.+++++|+++++. ++++++++.|+ +|+|||||++..
T Consensus 118 ~~v~i~~~~~Lf~~l~~-~~~~~v~~~Hsd~V~-----~l-P~g~~vlA~s~~~~-iaai~~~~~~i-~GvQFHPE~~~t 188 (536)
T PLN02347 118 MEIRVVCGSQLFGDLPS-GETQTVWMSHGDEAV-----KL-PEGFEVVAKSVQGA-VVAIENRERRI-YGLQYHPEVTHS 188 (536)
T ss_pred EEEEEcCCChhhhcCCC-CceEEEEEEEEEEee-----eC-CCCCEEEEEeCCCc-EEEEEECCCCE-EEEEccCCCCcc
Confidence 45555444344544432 212345677888774 23 67999999999987 89999999995 599999999887
Q ss_pred CCCchHHHHHHHHHHhcchhhhhc
Q 007496 532 PGKPSPLFLGLIAAACGQLDTLIQ 555 (601)
Q Consensus 532 p~~p~pLF~~Fv~aa~~~~~~~~~ 555 (601)
+. +..++++|+..++++...|..
T Consensus 189 ~~-G~~iL~NFl~~ic~~~~~~~~ 211 (536)
T PLN02347 189 PK-GMETLRHFLFDVCGVTADWKM 211 (536)
T ss_pred ch-HHHHHHHHHHHHhCcCCCcCc
Confidence 74 789999999888777666643
No 39
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.88 E-value=2e-21 Score=193.18 Aligned_cols=199 Identities=18% Similarity=0.243 Sum_probs=122.7
Q ss_pred eEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh-ccCCCEEEECCCCCCC
Q 007496 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNR 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlvpGGfG~r 375 (601)
.+|++++.|. +|. ++++.|+..|+.+.+. .| +.+ ++ +. ..++|||||+||||++
T Consensus 2 ~~il~iD~~d----sf~~nl~~~l~~~g~~~~v~---~~-~~~-~~---------------~l~~~~~~~iIlsgGPg~~ 57 (208)
T PRK05637 2 THVVLIDNHD----SFVYNLVDAFAVAGYKCTVF---RN-TVP-VE---------------EILAANPDLICLSPGPGHP 57 (208)
T ss_pred CEEEEEECCc----CHHHHHHHHHHHCCCcEEEE---eC-CCC-HH---------------HHHhcCCCEEEEeCCCCCH
Confidence 3799996444 454 8999999999876542 22 110 10 11 2478999999999998
Q ss_pred chhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCce-eeCcee
Q 007496 376 GVQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM-RLGSRR 453 (601)
Q Consensus 376 g~eg-~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Ggtm-rLG~~~ 453 (601)
...+ +...++.+. .++|+||||+|||+|+.++|++|.... .+.+.. .+ +.+ .+.|.+- -++..+
T Consensus 58 ~d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G~~--~~-i~~------~~~~~~~~l~~~~~ 123 (208)
T PRK05637 58 RDAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHGTT--DN-MIL------TDAGVQSPVFAGLA 123 (208)
T ss_pred HHhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccceE--EE-eEE------CCCCCCCcccCCCC
Confidence 5433 345555543 479999999999999999999986321 111100 00 000 0111100 011222
Q ss_pred EEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCC--CCeEEEEEECCCCcEEEEcccCCCcCC
Q 007496 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEIVELPNHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 454 v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~d--g~~vE~IE~~~hpffvGVQFHPE~ss~ 531 (601)
+...++ ...+.+.+..++.+ |+++ +..+ +++++++|++.+ +..+++++..+.| ++|+|||||...+
T Consensus 124 ~~~~~~---~~~~~g~~~~V~~~--H~~~-----v~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T 191 (208)
T PRK05637 124 TDVEPD---HPEIPGRKVPIARY--HSLG-----CVVA-PDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLS 191 (208)
T ss_pred cccccc---cccccCCceEEEEe--chhh-----hhcC-CCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcC
Confidence 221111 11222323345444 4444 4445 789999999765 3457888999888 5699999999888
Q ss_pred CCCchHHHHHHHHHHh
Q 007496 532 PGKPSPLFLGLIAAAC 547 (601)
Q Consensus 532 p~~p~pLF~~Fv~aa~ 547 (601)
+ .+..+|.+|++...
T Consensus 192 ~-~G~~il~nfl~~~~ 206 (208)
T PRK05637 192 P-TGPIILSRCVEQLL 206 (208)
T ss_pred C-CHHHHHHHHHHHHh
Confidence 7 58999999998765
No 40
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.87 E-value=1.2e-21 Score=196.12 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=133.3
Q ss_pred eEEEEEcccCCCcchHHHHHHHHH-HccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~-~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r- 375 (601)
+||||+ .|... .+-.++.+||+ .+|+++. ..|... ..+.++|+|+||||++..
T Consensus 1 ~~v~Vl-~~~G~-n~~~d~~~a~~~~~G~~~~----~v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGS-NCDRDMARALRDLLGAEPE----YVWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCc-ChHHHHHHHHHhcCCCeEE----EEecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 589999 46533 24467899999 8887642 234321 236788999999997531
Q ss_pred ----c----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCC
Q 007496 376 ----G----VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 445 (601)
Q Consensus 376 ----g----~eg~i~aik~are~~iP~LGICLGmQllaie--fgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Gg 445 (601)
+ ....+..++.+.++++|++|||.|+|+|+.+ +.+.+. ...|.+|
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~---~n~~~~~---------------------- 110 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALT---RNASLKF---------------------- 110 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEE---EcCCCcE----------------------
Confidence 1 2445677888888999999999999999853 222111 0001111
Q ss_pred ceeeCceeEEEccCCchhhhcc-CCce-eE-eeeeceeeeeChhhHhhhccCCeE---EEEEeCCCCeEEEEEECC-CCc
Q 007496 446 TMRLGSRRTYFQIKDCKSAKLY-GNRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEIVELPN-HPY 518 (601)
Q Consensus 446 tmrLG~~~v~l~~~~s~l~~ly-g~~~-~I-~erhrHrYeVn~~~v~~le~~Gl~---~~g~s~dg~~vE~IE~~~-hpf 518 (601)
.-....+.+.+..+.+.+.+ .+.. .+ ..-|+|||++|+++++++++.++. +++.+++|...++.++.+ ++|
T Consensus 111 --~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 111 --ICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred --EEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 00122233333224444444 2232 12 356799999999999999999987 444568998788888888 899
Q ss_pred EEEEcccCCCcCCC----CCchHHHHHHHH
Q 007496 519 FIGVQFHPEYKSRP----GKPSPLFLGLIA 544 (601)
Q Consensus 519 fvGVQFHPE~ss~p----~~p~pLF~~Fv~ 544 (601)
|+|+|||||+.++| .+++++|.+|++
T Consensus 189 ~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 189 VLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred EEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 99999999999998 889999999985
No 41
>PRK13566 anthranilate synthase; Provisional
Probab=99.86 E-value=4.1e-21 Score=220.40 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=138.8
Q ss_pred CCceEEEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC
Q 007496 295 HEPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (601)
Q Consensus 295 ~~~v~IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG 373 (601)
...++|.+|+ |. |++ .++.+.|+..|+++.+ +.+-.+.++ -...++|||||+||+|
T Consensus 524 ~~g~~IlvID-~~---dsf~~~l~~~Lr~~G~~v~v---v~~~~~~~~----------------~~~~~~DgVVLsgGpg 580 (720)
T PRK13566 524 GEGKRVLLVD-HE---DSFVHTLANYFRQTGAEVTT---VRYGFAEEM----------------LDRVNPDLVVLSPGPG 580 (720)
T ss_pred CCCCEEEEEE-CC---CchHHHHHHHHHHCCCEEEE---EECCCChhH----------------hhhcCCCEEEECCCCC
Confidence 3567999995 65 344 4788999999987644 122111110 1125799999999999
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCcee
Q 007496 374 NRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (601)
Q Consensus 374 ~rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~ 453 (601)
.+...+....++++.+.++|+||||||||+|+.++|++|..++. ++.|+ .++
T Consensus 581 sp~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~~~G~-----~~~ 632 (720)
T PRK13566 581 RPSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY-----------------------PMHGK-----PSR 632 (720)
T ss_pred ChhhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCC-----------------------CccCC-----ceE
Confidence 98766678899999999999999999999999999999965431 22343 345
Q ss_pred EEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCC--
Q 007496 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-- 531 (601)
Q Consensus 454 v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~-- 531 (601)
+.+..++.++..+. .. +...+.|+|.+.... + ++++++++.++++. ++++++++.|+ +|||||||+.-.
T Consensus 633 V~v~~~~~Lf~~lp-~~--~~v~~~Hs~~v~~~~---L-p~~~~vlA~s~dg~-V~ai~~~~~pi-~GVQFHPE~i~t~~ 703 (720)
T PRK13566 633 IRVRGPGRLFSGLP-EE--FTVGRYHSLFADPET---L-PDELLVTAETEDGV-IMAIEHKTLPV-AAVQFHPESIMTLG 703 (720)
T ss_pred EEECCCCchhhcCC-CC--CEEEEecceeEeecc---C-CCceEEEEEeCCCc-EEEEEECCCCE-EEEeccCeeCCcCC
Confidence 66555434444442 22 345677887765432 3 67899999999886 99999999995 599999998643
Q ss_pred CCCchHHHHHHHHHHh
Q 007496 532 PGKPSPLFLGLIAAAC 547 (601)
Q Consensus 532 p~~p~pLF~~Fv~aa~ 547 (601)
-..+..+|++|++.+.
T Consensus 704 ~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 704 GDVGLRIIENVVRLLA 719 (720)
T ss_pred chhHHHHHHHHHHHhh
Confidence 2347899999998874
No 42
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.86 E-value=4e-21 Score=220.21 Aligned_cols=193 Identities=21% Similarity=0.217 Sum_probs=138.8
Q ss_pred CceEEEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC
Q 007496 296 EPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~ 374 (601)
...+|+||+ |+ |++ .++.++|+..|+++.+ +.+...+++ -...++|||||+||||+
T Consensus 515 ~~~~IlVID-~g---ds~~~~l~~~L~~~G~~v~v---v~~~~~~~~----------------~~~~~~DgLILsgGPGs 571 (717)
T TIGR01815 515 EGRRILLVD-HE---DSFVHTLANYLRQTGASVTT---LRHSHAEAA----------------FDERRPDLVVLSPGPGR 571 (717)
T ss_pred CCCEEEEEE-CC---ChhHHHHHHHHHHCCCeEEE---EECCCChhh----------------hhhcCCCEEEEcCCCCC
Confidence 457999995 65 344 4899999999987643 122111110 11257999999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeE
Q 007496 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (601)
Q Consensus 375 rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v 454 (601)
+...+....++++.+.++|+||||||||+|+.++|++|..++ .+++|+ ..++
T Consensus 572 p~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~-----------------------~p~~G~-----~~~V 623 (717)
T TIGR01815 572 PADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP-----------------------EPVHGK-----ASRI 623 (717)
T ss_pred chhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC-----------------------CCeeCc-----ceEE
Confidence 876666788999999999999999999999999999886542 134564 2344
Q ss_pred EEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCC-
Q 007496 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG- 533 (601)
Q Consensus 455 ~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~- 533 (601)
....+++++..+.. . ....+.|+|.+.... + +.++.+++.++++. ++++++.++|+ +|+|||||....+.
T Consensus 624 ~~~~~~~Lf~~lp~-~--~~v~~~HS~~~~~~~---L-P~~~~vlA~s~d~~-v~Ai~~~~~~i-~GVQFHPEsi~T~sg 694 (717)
T TIGR01815 624 RVLGPDALFAGLPE-R--LTVGRYHSLFARRDR---L-PAELTVTAESADGL-IMAIEHRRLPL-AAVQFHPESIMTLDG 694 (717)
T ss_pred EECCCChhhhcCCC-C--CEEEEECCCCccccc---C-CCCeEEEEEeCCCc-EEEEEECCCCE-EEEEeCCeeCCccCc
Confidence 44433345555432 2 235677888775432 3 67899999998887 99999999995 59999999854432
Q ss_pred -CchHHHHHHHHHHhc
Q 007496 534 -KPSPLFLGLIAAACG 548 (601)
Q Consensus 534 -~p~pLF~~Fv~aa~~ 548 (601)
.+..+|++|+..+..
T Consensus 695 ~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 695 GAGLAMIGNVVDRLAA 710 (717)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 368999999988754
No 43
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.86 E-value=3.2e-21 Score=192.71 Aligned_cols=170 Identities=28% Similarity=0.335 Sum_probs=108.5
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC--------CC---c-------
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--------NR---G------- 376 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG--------~r---g------- 376 (601)
+.+++++.+|+..- +.+...+ ...+.+.++.+||||+|||.- .. .
T Consensus 28 ~Yv~~i~~aG~~pv----~ip~~~~-------------~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~ 90 (217)
T PF07722_consen 28 SYVKAIEAAGGRPV----PIPYDAD-------------DEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPE 90 (217)
T ss_dssp HHHHHHHHTT-EEE----EE-SS---------------HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHH
T ss_pred HHHHHHHHcCCEEE----EEccCCC-------------HHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHH
Confidence 67899999998642 2333321 012346778999999999962 11 1
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEE
Q 007496 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (601)
Q Consensus 377 -~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 455 (601)
..-.+.++++|+++++|+||||+|||+|++++|++.+. +... ..+ .... ..+. .....|++.
T Consensus 91 rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q--~~~~-~~~------~~~~-----~~~~---~~~~~h~v~ 153 (217)
T PF07722_consen 91 RDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQ--DIPD-QPG------FPDH-----RQHP---QDFPSHPVR 153 (217)
T ss_dssp HHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEES--CCCC-SS-------EEEC-----EE-S----TS--EEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCcee--eccc-CcC------cccc-----cccc---cccccccce
Confidence 11245677888889999999999999999999998853 2111 000 0000 0000 023478888
Q ss_pred EccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCC-cEEEEcccCC
Q 007496 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP-YFIGVQFHPE 527 (601)
Q Consensus 456 l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hp-ffvGVQFHPE 527 (601)
+.++ ++++++++ ...+.....|.++|.+ + ..||+++|+++||. +|+||.++++ |++|||||||
T Consensus 154 i~~~-s~l~~~~~-~~~~~vns~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 154 IVPG-SLLAKILG-SEEIEVNSFHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EETT-STCCCTSH-HCTEEEEEEECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred eccC-chHHHHhC-cCcceeecchhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 8888 88999996 3334445556678765 3 68999999999997 9999999988 8899999999
No 44
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.85 E-value=1e-20 Score=184.97 Aligned_cols=148 Identities=24% Similarity=0.351 Sum_probs=108.9
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-----------------h
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----------------V 377 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg-----------------~ 377 (601)
+++++|+.+|+.+.+ +.+... . ......+.++||||+|||++... .
T Consensus 23 ~~~~~l~~~G~~~~i---v~~~~~--~------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r 85 (189)
T cd01745 23 YYVDAVRKAGGLPVL---LPPVDD--E------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPER 85 (189)
T ss_pred HHHHHHHHCCCEEEE---eCCCCC--h------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhH
Confidence 788999999876532 222211 0 01124567899999999975310 0
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 -eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
...+.+++++.+.++|+||||+|||+|+.++|++|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~---------------------------------------- 125 (189)
T cd01745 86 DAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI---------------------------------------- 125 (189)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC----------------------------------------
Confidence 134678888888999999999999999999887763200
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCC-CCCc
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-PGKP 535 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~-p~~p 535 (601)
.+ .+.|+++| ..+ +.+++++++++++. +|++++++|++++|+|||||+... |.+.
T Consensus 126 ---------------~v--~~~H~~~v-----~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~~ 181 (189)
T cd01745 126 ---------------RV--NSLHHQAI-----KRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPDS 181 (189)
T ss_pred ---------------ce--echHHHHH-----hhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCchH
Confidence 12 23366554 344 67899999988886 999999987778899999999998 7788
Q ss_pred hHHHHHHH
Q 007496 536 SPLFLGLI 543 (601)
Q Consensus 536 ~pLF~~Fv 543 (601)
..+|++|+
T Consensus 182 ~~if~~f~ 189 (189)
T cd01745 182 LKLFEAFV 189 (189)
T ss_pred hHHHHHhC
Confidence 99999984
No 45
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=1.7e-20 Score=209.95 Aligned_cols=187 Identities=17% Similarity=0.241 Sum_probs=126.9
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh-ccCCCEEEECCCCCCCch
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlvpGGfG~rg~ 377 (601)
|.+|+.|. +|. ++++.|+..|.. .+. .+.+.+.. . .+. ..++||||++||||++..
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~-~v~----~~~~~~~~-------~------~~~~~~~~d~vIlsgGP~~p~~ 59 (534)
T PRK14607 2 IILIDNYD----SFTYNIYQYIGELGPE-EIE----VVRNDEIT-------I------EEIEALNPSHIVISPGPGRPEE 59 (534)
T ss_pred EEEEECch----hHHHHHHHHHHHcCCC-eEE----EECCCCCC-------H------HHHHhcCCCEEEECCCCCChhh
Confidence 77887665 564 788999999875 121 12222111 0 011 237899999999999743
Q ss_pred h-HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 e-g~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
. ..+..++++ +.++|+||||+|||+|+.++|++|...+. .+.|+ .+++..
T Consensus 60 ~~~~~~li~~~-~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-----------------------~~~G~-----~~~v~~ 110 (534)
T PRK14607 60 AGISVEVIRHF-SGKVPILGVCLGHQAIGYAFGGKIVHAKR-----------------------ILHGK-----TSPIDH 110 (534)
T ss_pred CCccHHHHHHh-hcCCCEEEEcHHHHHHHHHcCCeEecCCc-----------------------cccCC-----ceeEEE
Confidence 2 234556653 67899999999999999999999865321 12233 233333
Q ss_pred ccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCch
Q 007496 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (601)
Q Consensus 457 ~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~ 536 (601)
... +++..+.. . +...+.|+|.|.... + +.+++++++++++. +++++++++|+ +|+|||||.... .+..
T Consensus 111 ~~~-~lf~~~~~-~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~d~~-i~a~~~~~~pi-~GvQFHPE~~~t-~~g~ 179 (534)
T PRK14607 111 NGK-GLFRGIPN-P--TVATRYHSLVVEEAS---L-PECLEVTAKSDDGE-IMGIRHKEHPI-FGVQFHPESILT-EEGK 179 (534)
T ss_pred CCC-cchhcCCC-C--cEEeeccchheeccc---C-CCCeEEEEEcCCCC-EEEEEECCCCE-EEEEeCCCCCCC-hhHH
Confidence 322 34443322 2 234677888885432 3 67899999998887 99999999995 599999997544 4688
Q ss_pred HHHHHHHHHHhc
Q 007496 537 PLFLGLIAAACG 548 (601)
Q Consensus 537 pLF~~Fv~aa~~ 548 (601)
.+|.+|++.+..
T Consensus 180 ~i~~nFl~~~~~ 191 (534)
T PRK14607 180 RILKNFLNYQRE 191 (534)
T ss_pred HHHHHHHHHhhc
Confidence 999999998753
No 46
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=3.1e-20 Score=182.79 Aligned_cols=185 Identities=19% Similarity=0.226 Sum_probs=116.9
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
|+|+|| ||+.. ++.|+.++|++.|+++.+ +... +.+.++|+||+|| +|.+..
T Consensus 1 m~i~ii-d~g~g--n~~s~~~~l~~~g~~~~~------v~~~------------------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTGCA--NLSSVKFAIERLGYEPVV------SRDP------------------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCCCc--hHHHHHHHHHHCCCeEEE------ECCH------------------HHhCCCCEEEECC-CCchHH
Confidence 689999 58854 888999999999876533 3221 4567899999976 455432
Q ss_pred --hHH--HHHHHHHHHcCCCEEEEehhHHHHHHHhccc----cccccCCCCCccCCCCCCCeeeeCC--CCCcccCCCce
Q 007496 378 --QGK--ILAAKYAREHRIPYLGICLGMQVAVIEFARS----VLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTM 447 (601)
Q Consensus 378 --eg~--i~aik~are~~iP~LGICLGmQllaiefgrn----V~gl~da~S~Ef~~~~~~pvi~~mp--e~~~~h~Ggtm 447 (601)
... ...++.+++.++|+||||+|||+|+.+++.. -+++-+ ..+ ..++ ....+|+||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~-----------g~v-~~~~~~~~~~p~~G~~- 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIID-----------GPV-KKMTDFGLPLPHMGWN- 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCccccc-----------EEE-EECCCCCCCCCccccc-
Confidence 111 1234555566899999999999999887431 111111 111 1121 1245688874
Q ss_pred eeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCC
Q 007496 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 527 (601)
Q Consensus 448 rLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE 527 (601)
++.+.+++.++..+-. . ...+|.|+|++.++ ...++.++++..+.++ +.+.+ ++|+|||||
T Consensus 120 -----~v~~~~~~~l~~~l~~-~--~~v~~~Hs~~lp~~---------~~~la~s~~~~~~~~~-~~~~~-i~G~QFHPE 180 (196)
T PRK13170 120 -----QVTPQAGHPLFQGIED-G--SYFYFVHSYAMPVN---------EYTIAQCNYGEPFSAA-IQKDN-FFGVQFHPE 180 (196)
T ss_pred -----eeEeCCCChhhhCCCc-C--CEEEEECeeecCCC---------CcEEEEecCCCeEEEE-EEcCC-EEEEECCCC
Confidence 4555444345555432 2 34578889987532 2366777776643333 34445 669999999
Q ss_pred CcCCCCCchHHHHHHHH
Q 007496 528 YKSRPGKPSPLFLGLIA 544 (601)
Q Consensus 528 ~ss~p~~p~pLF~~Fv~ 544 (601)
++. ..+..++.+|++
T Consensus 181 ~~~--~~G~~~l~nfl~ 195 (196)
T PRK13170 181 RSG--AAGAQLLKNFLE 195 (196)
T ss_pred Ccc--cccHHHHHHHhh
Confidence 985 358999999975
No 47
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.84 E-value=1.6e-20 Score=209.03 Aligned_cols=189 Identities=21% Similarity=0.282 Sum_probs=130.7
Q ss_pred EEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhcc--CCCEEEECCCCCCC
Q 007496 299 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 375 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlvpGGfG~r 375 (601)
+|+++ ||++ .|. ++.++|+.+|+.+.+ .+.+.. . +.+. ++||||+|||+.+.
T Consensus 5 ~i~vl-D~Gs---q~~~li~r~lrelg~~~~v----~p~~~~-~----------------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 5 KILIL-DFGS---QYTQLIARRVRELGVYSEI----VPYDIS-A----------------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred EEEEE-ECCC---CcHHHHHHHHHHCCCeEEE----EECCCC-H----------------HHHhccCCCEEEECCCCccc
Confidence 69999 5874 454 788999999987544 222221 0 2232 56999999998764
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEE
Q 007496 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (601)
Q Consensus 376 g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 455 (601)
..+......+.+.+.++|+||||+|||+|+.++|++|...+ . .+ .|.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~--------------------~e------~G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---K--------------------RE------YGRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---C--------------------cc------cceEEEE
Confidence 32222233456677899999999999999999999885321 1 11 2344555
Q ss_pred EccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCc
Q 007496 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 535 (601)
Q Consensus 456 l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p 535 (601)
+.+++.++..+- .... .++.|+++|. .+ +.|++++|.++++. ++++++.+.| ++|+|||||++..+ ++
T Consensus 111 i~~~~~Lf~~l~-~~~~--v~~~H~d~V~-----~l-p~g~~vlA~s~~~~-v~ai~~~~~~-i~GvQFHPE~~~t~-~G 178 (511)
T PRK00074 111 VDNDSPLFKGLP-EEQD--VWMSHGDKVT-----EL-PEGFKVIASTENCP-IAAIANEERK-FYGVQFHPEVTHTP-QG 178 (511)
T ss_pred EcCCChhhhcCC-CceE--EEEECCeEEE-----ec-CCCcEEEEEeCCCC-EEEEEeCCCC-EEEEeCCCCcCCch-hH
Confidence 555433444442 2333 4556777763 34 78999999998876 9999998888 45999999999876 47
Q ss_pred hHHHHHHHHHHhcchhhh
Q 007496 536 SPLFLGLIAAACGQLDTL 553 (601)
Q Consensus 536 ~pLF~~Fv~aa~~~~~~~ 553 (601)
..+|++|+...+++...|
T Consensus 179 ~~il~nFl~~i~~~~~~~ 196 (511)
T PRK00074 179 KKLLENFVFDICGCKGDW 196 (511)
T ss_pred HHHHHHHHHHhcCCCCCc
Confidence 899999997666655544
No 48
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=4.8e-20 Score=183.23 Aligned_cols=194 Identities=21% Similarity=0.207 Sum_probs=119.7
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg- 376 (601)
+||+|| +|+.. +..|+.++|++.|+++ ++.|+.+. +.+.++|||||||+.....
T Consensus 2 ~~~~ii-d~g~g--n~~s~~~al~~~g~~~----~v~~~~~~------------------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGSG--NLRSAAKALERAGAGA----DVVVTADP------------------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCCC--hHHHHHHHHHHcCCCc----cEEEECCH------------------HHhcCCCEEEECCCCcHHHH
Confidence 689999 59854 6789999999999864 34555432 4578999999999632211
Q ss_pred ---h--hHHHHH-HHHHHHcCCCEEEEehhHHHHHHH---hccccccccCCCCCccCCCCCCCeeeeCC---CCCcccCC
Q 007496 377 ---V--QGKILA-AKYAREHRIPYLGICLGMQVAVIE---FARSVLNLRDANSTEFDPNTKNPCVIFMP---EGSKTHMG 444 (601)
Q Consensus 377 ---~--eg~i~a-ik~are~~iP~LGICLGmQllaie---fgrnV~gl~da~S~Ef~~~~~~pvi~~mp---e~~~~h~G 444 (601)
. .+.... ++.+.+.++|+||||+|||+|+.+ ++ .+-++. .+ +..+..+-| ....+|+|
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~-~~~glg-----~l----~g~v~~~~~~~~~~~~p~~G 126 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHG-DTPGLG-----LI----PGEVVRFQPDGPALKVPHMG 126 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccC-CCCCcc-----eE----eEEEEEcCCCCCCCccCccC
Confidence 1 123344 444556899999999999999864 11 010000 00 011111101 11346777
Q ss_pred CceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcc
Q 007496 445 GTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQF 524 (601)
Q Consensus 445 gtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQF 524 (601)
|+ ++...++++++..+.. .. ..++.|+|.+.+. + +..+++.++++..+.++.. +.+ ++|+||
T Consensus 127 ~~------~v~~~~~~~lf~~~~~-~~--~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~-~~~-i~GvQF 188 (209)
T PRK13146 127 WN------TVDQTRDHPLFAGIPD-GA--RFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVA-RDN-LFATQF 188 (209)
T ss_pred hH------HeeeCCCChhccCCCC-CC--EEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEe-cCC-EEEEEc
Confidence 74 3444444345555432 22 3567899988532 1 3467788777655666654 445 679999
Q ss_pred cCCCcCCCCCchHHHHHHHHHH
Q 007496 525 HPEYKSRPGKPSPLFLGLIAAA 546 (601)
Q Consensus 525 HPE~ss~p~~p~pLF~~Fv~aa 546 (601)
|||+++ .....++++|++.+
T Consensus 189 HPE~s~--~~G~~ll~nfl~~~ 208 (209)
T PRK13146 189 HPEKSQ--DAGLALLRNFLAWL 208 (209)
T ss_pred CCcccH--HHHHHHHHHHHhhc
Confidence 999874 35789999998753
No 49
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.82 E-value=1.7e-19 Score=179.72 Aligned_cols=191 Identities=20% Similarity=0.200 Sum_probs=118.0
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg- 376 (601)
++|+|+ +|+.. +..|+.++|+.+|+++.+ ++.+ +.+.++|+|++|| +|++.
T Consensus 2 ~~v~ii-d~~~G--N~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG-~g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYSMG--NLHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPG-VGSFDL 53 (210)
T ss_pred cEEEEE-EcCCc--cHHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECC-CCchHH
Confidence 589999 58843 789999999999987543 2211 3456799999887 45432
Q ss_pred -h-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc-ccccCCCCCccCCCCCCCeeeeCC---CCCcccCCCc
Q 007496 377 -V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV-LNLRDANSTEFDPNTKNPCVIFMP---EGSKTHMGGT 446 (601)
Q Consensus 377 -~-----eg~i~aik~are~~iP~LGICLGmQllaiefgrnV-~gl~da~S~Ef~~~~~~pvi~~mp---e~~~~h~Ggt 446 (601)
. .+....++.+.++++|+||||+|||+|+..+.... .++. -.+..| ..++ ..+.+|+||+
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg---------~~~G~v-~~~~~~~~~~~p~~Gw~ 123 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLG---------IYKGQV-KRLKHSPVKVIPHMGWN 123 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCcc---------ceeEEE-EECCCCCCCccCccCCc
Confidence 1 25567788888889999999999999986544321 1110 001222 2222 2357899995
Q ss_pred eeeCceeEEEccC------CchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEE
Q 007496 447 MRLGSRRTYFQIK------DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFI 520 (601)
Q Consensus 447 mrLG~~~v~l~~~------~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffv 520 (601)
. +.+..+ ++++..+-. .. ..++.|+|.+.|+. ..-+..++...+...+.+++. .+ ++
T Consensus 124 ~------v~~~~~~~~~~~~~lf~~l~~-~~--~v~~~HS~~v~p~~-----~~~l~~t~~~~~~~~v~a~~~--~~-i~ 186 (210)
T CHL00188 124 R------LECQNSECQNSEWVNWKAWPL-NP--WAYFVHSYGVMPKS-----QACATTTTFYGKQQMVAAIEY--DN-IF 186 (210)
T ss_pred c------ceecCCcccccCChhhcCCCC-CC--EEEEeCccEecCCC-----CceEEEEEecCCcceEEEEec--CC-EE
Confidence 4 222221 235555432 32 34567999886432 112333333322234788885 24 66
Q ss_pred EEcccCCCcCCCCCchHHHHHHHHH
Q 007496 521 GVQFHPEYKSRPGKPSPLFLGLIAA 545 (601)
Q Consensus 521 GVQFHPE~ss~p~~p~pLF~~Fv~a 545 (601)
|+|||||+++ + .+..++++|++.
T Consensus 187 GvQFHPE~s~-~-~G~~il~nfl~~ 209 (210)
T CHL00188 187 AMQFHPEKSG-E-FGLWLLREFMKK 209 (210)
T ss_pred EEecCCcccc-H-hHHHHHHHHHhh
Confidence 9999999883 3 478999999864
No 50
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.82 E-value=2.2e-19 Score=208.61 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=128.1
Q ss_pred CceEEEEEcccCCCcchHH-HHHHHHHHc-cccceeEEEEEeecCCCcccccccCCchhhhHHH---HhccCCCEEEECC
Q 007496 296 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW---KLLKGADGILVPG 370 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~-SIi~aL~~a-g~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~---~~L~~~DGIlvpG 370 (601)
+.|+|.+||.|. +|. +++..|... |..+.+ ...+..++ .++. ..+..+|||||+|
T Consensus 80 ~~~~iLlIDnyD----SfTyNL~~~L~~~~g~~~~V----v~nd~~~~------------~~~~~~~~~~~~~d~IVlSP 139 (918)
T PLN02889 80 EFVRTLLIDNYD----SYTYNIYQELSIVNGVPPVV----VRNDEWTW------------EEVYHYLYEEKAFDNIVISP 139 (918)
T ss_pred ccceEEEEeCCC----chHHHHHHHHHHhcCCCEEE----EeCCCCCH------------HHHHhhhhcccCCCEEEECC
Confidence 348999999887 554 688888887 766433 12221111 1111 1245899999999
Q ss_pred CCCCCchh---HH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCc
Q 007496 371 GFGNRGVQ---GK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (601)
Q Consensus 371 GfG~rg~e---g~-i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt 446 (601)
|||+|... |. +..++.+ .++|+||||||||+|+.+||+.|.+.+.. .+|.+
T Consensus 140 GPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~-----------------------~HG~~ 194 (918)
T PLN02889 140 GPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEP-----------------------VHGRL 194 (918)
T ss_pred CCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCc-----------------------eeeee
Confidence 99998532 21 2333322 47999999999999999999999654311 11221
Q ss_pred eeeCceeEEEccCCchhhhccCC--ceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCC--------------------
Q 007496 447 MRLGSRRTYFQIKDCKSAKLYGN--RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-------------------- 504 (601)
Q Consensus 447 mrLG~~~v~l~~~~s~l~~lyg~--~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~d-------------------- 504 (601)
..+.. .+..++..+..+ ......|+ |+..|++..+ +.+++++|++.+
T Consensus 195 -----s~I~h-~~~~lF~glp~~~~~~f~v~RY-HSL~v~~~~l----P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~ 263 (918)
T PLN02889 195 -----SEIEH-NGCRLFDDIPSGRNSGFKVVRY-HSLVIDAESL----PKELVPIAWTSSSDTLSFLESQKSGLVPDAYE 263 (918)
T ss_pred -----eeEee-cCchhhcCCCcCCCCCceEEeC-CCcccccCCC----CCceEEEEEECCCccccccccccccccccccc
Confidence 11111 122345555321 11222455 8888875433 567888887654
Q ss_pred --------------------------------CCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007496 505 --------------------------------SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 549 (601)
Q Consensus 505 --------------------------------g~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (601)
+..+++++|+.+|++ |||||||....+ .+..||.+|++++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~-GVQfHPESi~t~-~G~~l~~nF~~~~~~~ 338 (918)
T PLN02889 264 SQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHY-GLQFHPESIATC-YGRQIFKNFREITQDY 338 (918)
T ss_pred ccccccccccccccccccccccccccccccCCCCeeEEEEECCCceE-EEEeCCccccCc-hhHHHHHHHHHHHHHH
Confidence 135999999999965 999999998887 4789999999998754
No 51
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=3e-19 Score=176.34 Aligned_cols=196 Identities=19% Similarity=0.194 Sum_probs=120.0
Q ss_pred EEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC-Cc-
Q 007496 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG- 376 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~-rg- 376 (601)
+|+++ +|+.. +-.++.++|+..|+++.+ +... +.+.++|||++|||... ..
T Consensus 1 ~i~~~-d~~~~--~~~~i~~~l~~~G~~v~~------~~~~------------------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAII-DYGMG--NLRSVEKALERLGAEAVI------TSDP------------------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEE-EcCCc--hHHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCCCchHHHH
Confidence 47888 58743 346899999999987544 2111 35678999999986321 11
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc--ccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeC
Q 007496 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (601)
Q Consensus 377 ----~eg~i~aik~are~~iP~LGICLGmQllaiefgr--nV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 450 (601)
..+....++.+.++++|+||||+|||+|+.++.. .+.+|.. ++ .. +...+. +.-++....|
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~-----l~----g~-v~~~~~---~~~~~~~~~g 120 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGL-----LP----GR-VRRFPP---EEGLKVPHMG 120 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccce-----EE----EE-EEEcCC---CCCCcccEec
Confidence 1245677888888999999999999999876311 1111000 00 00 111110 0001122334
Q ss_pred ceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcC
Q 007496 451 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (601)
Q Consensus 451 ~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss 530 (601)
.+++.+.+++.++..+. ....+ .+.|++.+.+ ++++.+++.++++..++++.. +.+ ++|||||||+..
T Consensus 121 ~~~i~~~~~~~l~~~l~-~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~-i~GvQfHPE~~~ 188 (205)
T PRK13141 121 WNQLELKKESPLLKGIP-DGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDN-VFGAQFHPEKSG 188 (205)
T ss_pred CccceeCCCChhhhCCC-CCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCC-EEEEeCCCccch
Confidence 56666655534444443 23233 3568888742 356788888877755777754 444 679999999975
Q ss_pred CCCCchHHHHHHHHHHhc
Q 007496 531 RPGKPSPLFLGLIAAACG 548 (601)
Q Consensus 531 ~p~~p~pLF~~Fv~aa~~ 548 (601)
+ ....+|++|+++|.+
T Consensus 189 -~-~g~~l~~~fl~~~~~ 204 (205)
T PRK13141 189 -D-VGLKILKNFVEMVEE 204 (205)
T ss_pred -H-HHHHHHHHHHHHhhc
Confidence 3 578999999998743
No 52
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=6.7e-19 Score=175.41 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=119.9
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch--
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~-- 377 (601)
|+|| ||+.. +-.|+.++|+..+.+. .|+... +.+.++|+||+||+ |++..
T Consensus 2 i~ii-dyg~g--Nl~s~~~al~~~~~~~------~~~~~~------------------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYGMG--NIHSCLKAVSLYTKDF------VFTSDP------------------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECCCc--hHHHHHHHHHHcCCeE------EEECCH------------------HHhccCCEEEECCC-CchHHHH
Confidence 8999 69865 7889999999998753 344322 45689999999996 44321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCC--CCcccCCCceeeC
Q 007496 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE--GSKTHMGGTMRLG 450 (601)
Q Consensus 378 -----eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe--~~~~h~GgtmrLG 450 (601)
.+....++.+.+.++|+||||+|||+|+..+.-..-+.......-++ -.+..| ..|+. ...+|+||+.
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg-~~~~~v-~~~~~~~~~~ph~Gw~~--- 128 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLG-YIKGKI-KKFEGKDFKVPHIGWNR--- 128 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcc-eeEEEE-EEcCCCCCcCCccCccc---
Confidence 25667777777889999999999999987654210000000000000 001122 22232 3568999953
Q ss_pred ceeEEEc--cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCC-CCeEEEEEECCCCcEEEEcccCC
Q 007496 451 SRRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHPYFIGVQFHPE 527 (601)
Q Consensus 451 ~~~v~l~--~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~d-g~~vE~IE~~~hpffvGVQFHPE 527 (601)
+.+. .+++++..+-. . ...+|.|+|.+++. .-+..++.+++ +..+.++. .+.+ ++|+|||||
T Consensus 129 ---v~~~~~~~~~lf~~l~~-~--~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~-i~GvQFHPE 193 (210)
T PRK14004 129 ---LQIRRKDKSKLLKGIGD-Q--SFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKEN-IFGTQFHPE 193 (210)
T ss_pred ---ceeccCCCCccccCCCC-C--CEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCC-EEEEeCCcc
Confidence 2222 12244554432 2 24578899865321 22456676665 55444554 4556 569999999
Q ss_pred CcCCCCCchHHHHHHHHH
Q 007496 528 YKSRPGKPSPLFLGLIAA 545 (601)
Q Consensus 528 ~ss~p~~p~pLF~~Fv~a 545 (601)
++. + .+..++++|++.
T Consensus 194 ~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 194 KSH-T-HGLKLLENFIEF 209 (210)
T ss_pred cCc-h-hHHHHHHHHHhh
Confidence 887 4 689999999864
No 53
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.81 E-value=4.9e-19 Score=197.70 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=121.8
Q ss_pred eEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCCC
Q 007496 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG~ 374 (601)
++|.+|+.|. +|. ++.+.|+..|+++.+. .+..+.+. ..+.+ .++|+|||+||||+
T Consensus 2 ~~iLiIDn~d----sft~nl~~~lr~~g~~v~V~---~~~~~~~~--------------~~~~l~~~~~~~IIlSpGPg~ 60 (531)
T PRK09522 2 ADILLLDNID----SFTYNLADQLRSNGHNVVIY---RNHIPAQT--------------LIERLATMSNPVLMLSPGPGV 60 (531)
T ss_pred CeEEEEeCCC----hHHHHHHHHHHHCCCCEEEE---ECCCCCcc--------------CHHHHHhcCcCEEEEcCCCCC
Confidence 4799998655 665 6888898888765442 22111100 01222 36789999999999
Q ss_pred CchhHHH-HHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCcee
Q 007496 375 RGVQGKI-LAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (601)
Q Consensus 375 rg~eg~i-~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~ 453 (601)
+...+.. ..+++. ..++|+||||+|||+|+.+||+.|...+. ...|.+. .
T Consensus 61 p~d~~~~~~i~~~~-~~~iPILGIClG~QlLa~a~GG~V~~~~~-----------------------~~~G~~~-----~ 111 (531)
T PRK09522 61 PSEAGCMPELLTRL-RGKLPIIGICLGHQAIVEAYGGYVGQAGE-----------------------ILHGKAS-----S 111 (531)
T ss_pred hhhCCCCHHHHHHH-hcCCCEEEEcHHHHHHHHhcCCEEEeCCc-----------------------eeeeeEE-----E
Confidence 8643332 333333 35899999999999999999999954210 0112111 1
Q ss_pred EEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 454 v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
+.. .+.+++..+. ....+ .+.|++.+. .+ ++++++++. .++. ++++++.++|+ +|||||||....+
T Consensus 112 i~~-~~~~lf~~~~-~~~~v--~~~Hs~~v~-----~l-P~~l~vlA~-sd~~-v~ai~~~~~~i-~GVQFHPEs~~T~- 177 (531)
T PRK09522 112 IEH-DGQAMFAGLT-NPLPV--ARYHSLVGS-----NI-PAGLTINAH-FNGM-VMAVRHDADRV-CGFQFHPESILTT- 177 (531)
T ss_pred Eee-cCCccccCCC-CCcEE--EEehheecc-----cC-CCCcEEEEe-cCCC-EEEEEECCCCE-EEEEecCccccCc-
Confidence 111 1113343332 23334 445676663 34 789999997 5666 99999998885 5999999999887
Q ss_pred CchHHHHHHHHHHhc
Q 007496 534 KPSPLFLGLIAAACG 548 (601)
Q Consensus 534 ~p~pLF~~Fv~aa~~ 548 (601)
++..+|++|++.+..
T Consensus 178 ~G~~il~NFl~~~~~ 192 (531)
T PRK09522 178 QGARLLEQTLAWAQQ 192 (531)
T ss_pred chHHHHHHHHHHHhh
Confidence 589999999988753
No 54
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.81 E-value=3.2e-19 Score=184.23 Aligned_cols=175 Identities=24% Similarity=0.314 Sum_probs=110.0
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc----hhHHHHHHHHHHHc
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYAREH 390 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg----~eg~i~aik~are~ 390 (601)
|.+++|+.+|+.+ .+.+++++ ++ .+.+.|..+||||+|||+-+.. .......++.|++.
T Consensus 24 ~Yv~~l~~aG~~v----vpi~~~~~---~~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~ 86 (273)
T cd01747 24 SYVKFLESAGARV----VPIWINES---EE----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALER 86 (273)
T ss_pred HHHHHHHHCCCeE----EEEEeCCc---HH----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHh
Confidence 7899999999864 34555532 11 1235578999999999975432 22233455666655
Q ss_pred C-----CCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccC---Cch
Q 007496 391 R-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCK 462 (601)
Q Consensus 391 ~-----iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~---~s~ 462 (601)
+ +|+||||||||+|+.++|+++..+.. ++ ..|+ ..++.+.+. +.+
T Consensus 87 ~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~-----~~-----------------~~~~-----~~~l~~t~~~~~s~l 139 (273)
T cd01747 87 NDAGDYFPVWGTCLGFELLTYLTSGETLLLEA-----TE-----------------ATNS-----ALPLNFTEDALQSRL 139 (273)
T ss_pred hhcCCCCcEEEEcHHHHHHHHHhCCCccccCC-----Cc-----------------cccc-----eEEEEEccccccChh
Confidence 4 89999999999999999876522111 10 1122 223333321 122
Q ss_pred hhhccC----C-ceeEeeeeceeeeeChhhHhh---hccCCeEEEEEeCC--CC-eEEEEEECCCCcEEEEcccCCCcCC
Q 007496 463 SAKLYG----N-RTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEIVELPNHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 463 l~~lyg----~-~~~I~erhrHrYeVn~~~v~~---le~~Gl~~~g~s~d--g~-~vE~IE~~~hpffvGVQFHPE~ss~ 531 (601)
+..+-. . ......+|+|+|.+.++.... | +..+++++++.| |. .++++|+.++|+| |+|||||++..
T Consensus 140 F~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi~-gvQFHPEks~f 217 (273)
T cd01747 140 FKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPIY-GVQWHPEKNAF 217 (273)
T ss_pred hhcCCHHHHHHHhcccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCceE-EEecCCCcccc
Confidence 222210 0 112246899999998765432 2 345788888765 43 4789999999965 99999999877
Q ss_pred CCCc
Q 007496 532 PGKP 535 (601)
Q Consensus 532 p~~p 535 (601)
++.+
T Consensus 218 ew~~ 221 (273)
T cd01747 218 EWKK 221 (273)
T ss_pred cccc
Confidence 6553
No 55
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=6.4e-19 Score=173.37 Aligned_cols=178 Identities=24% Similarity=0.268 Sum_probs=112.2
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc---
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg--- 376 (601)
|+++ ||+.. ++.|+.++|+..|+++.+ +... +.+.++|+||+||| |+++
T Consensus 2 i~vi-d~g~g--n~~~~~~~l~~~g~~v~~------~~~~------------------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGAG--NLRSVANALKRLGVEAVV------SSDP------------------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCCC--hHHHHHHHHHHCCCcEEE------EcCh------------------HHhccCCEEEECCC-CCHHHHH
Confidence 8888 58854 788999999999876533 2111 34678999999885 4432
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh-----------ccccccccCCCCCccCCCCCCCeeeeCCCCCcc
Q 007496 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF-----------ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKT 441 (601)
Q Consensus 377 ----~eg~i~aik~are~~iP~LGICLGmQllaief-----------grnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~ 441 (601)
..+....++.+++.++|+||||+|||+|+.++ +.+|.+.+.. ....+
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~------------------~~~~~ 115 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSE------------------PLKVP 115 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCC------------------CCCCC
Confidence 12456778888889999999999999999873 2222211100 01123
Q ss_pred cCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeE-EEEEECCCCcEE
Q 007496 442 HMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRM-EIVELPNHPYFI 520 (601)
Q Consensus 442 h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~v-E~IE~~~hpffv 520 (601)
++|| +++.+.++++++..+. .... ..+.|+|.+.+. + ...++++++++..+ ++++ +.+ ++
T Consensus 116 ~~G~------~~v~~~~~~~lf~~l~-~~~~--~~~~Hs~~v~~~------~-~~~~lA~s~~~~~~~~~~~--~~~-i~ 176 (199)
T PRK13181 116 QMGW------NSVKPLKESPLFKGIE-EGSY--FYFVHSYYVPCE------D-PEDVLATTEYGVPFCSAVA--KDN-IY 176 (199)
T ss_pred ccCc------cccccCCCChhHcCCC-CCCE--EEEeCeeEeccC------C-cccEEEEEcCCCEEEEEEE--CCC-EE
Confidence 4554 3444444434444442 2322 356688887432 1 23467887765522 3333 445 66
Q ss_pred EEcccCCCcCCCCCchHHHHHHHH
Q 007496 521 GVQFHPEYKSRPGKPSPLFLGLIA 544 (601)
Q Consensus 521 GVQFHPE~ss~p~~p~pLF~~Fv~ 544 (601)
|+|||||++. + ....+|++|++
T Consensus 177 GvQFHPE~~~-~-~g~~ll~nfl~ 198 (199)
T PRK13181 177 AVQFHPEKSG-K-AGLKLLKNFAE 198 (199)
T ss_pred EEECCCccCC-H-HHHHHHHHHHh
Confidence 9999999873 3 47889999975
No 56
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=1.7e-18 Score=170.77 Aligned_cols=194 Identities=19% Similarity=0.212 Sum_probs=117.8
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC--
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r-- 375 (601)
+||.++ +|+.. +-.++.++|+.+|+++.+ . ... ..++++|||++|||....
T Consensus 1 ~~~~v~-~~~~~--~~~~~~~~l~~~G~~~~~----~--~~~------------------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGVG--NLRSVSKALERAGAEVVI----T--SDP------------------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCCc--cHHHHHHHHHHCCCeEEE----E--CCH------------------HHHccCCEEEECCCCCHHHH
Confidence 589999 58733 447999999999987533 1 110 346789999999853221
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCcee
Q 007496 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (601)
Q Consensus 376 --g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~ 453 (601)
..+...+.++.+.++++|+||||+|||+|+.++.... ..+.+. -+ ...+.......... +.|.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~-~~~~lg--~~----~g~v~~~~~~~~~~------~~g~~~ 120 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEGG-GVRGLG--LF----PGRVVRFPAGVKVP------HMGWNT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCC-CCCCcc--ee----eEEEEEcCCCCCCC------eecceE
Confidence 1245677888888999999999999999997532100 000000 00 00111100000112 234556
Q ss_pred EEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 454 v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
+.+..++.+++.+ . ...+ .+.|+|.+.+ +.++.++++++++..+++.... .| ++|+|||||++. +
T Consensus 121 v~~~~~~~l~~~l-~-~~~~--~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~-~~-~~gvQfHPE~~~-~- 185 (200)
T PRK13143 121 VKVVKDCPLFEGI-D-GEYV--YFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCN-DN-VFGTQFHPEKSG-E- 185 (200)
T ss_pred EEEcCCChhhccC-C-CcEE--EEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEc-CC-EEEEeCCCccch-H-
Confidence 6665553444455 2 2222 4567887753 3457888988887645555443 34 679999999974 2
Q ss_pred CchHHHHHHHHHH
Q 007496 534 KPSPLFLGLIAAA 546 (601)
Q Consensus 534 ~p~pLF~~Fv~aa 546 (601)
....+|++|++.+
T Consensus 186 ~g~~i~~~f~~~~ 198 (200)
T PRK13143 186 TGLKILENFVELI 198 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999876
No 57
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.80 E-value=9e-19 Score=171.93 Aligned_cols=186 Identities=23% Similarity=0.278 Sum_probs=113.9
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch--
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~-- 377 (601)
|+|+ +|+.- +-.++.++|+.+|+++.+. +.. +.+.++|+|++||| |.+..
T Consensus 1 i~i~-d~g~~--~~~~~~~~l~~~g~~v~v~------~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYGMG--NLRSVANALERLGAEVIIT------SDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCCCC--hHHHHHHHHHHCCCeEEEE------cCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 5677 58743 5568999999999875442 111 34678999999875 44321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--ccccccccCCCCCccCCCCCCCeeeeCCC---CCcccCCCce
Q 007496 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGGTM 447 (601)
Q Consensus 378 -----eg~i~aik~are~~iP~LGICLGmQllaief--grnV~gl~da~S~Ef~~~~~~pvi~~mpe---~~~~h~Ggtm 447 (601)
.+..+.++.+.++++|+||||+|||+|+.++ ++.+-++. -++ ..+. .++. ...+++|+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg-----~~~----g~v~-~~~~~~~~~~~~~G~-- 120 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLG-----LIP----GKVV-RFPASEGLKVPHMGW-- 120 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCC-----Ccc----eEEE-ECCCCCCceEEEecc--
Confidence 2467788888889999999999999998762 11110000 010 1111 1110 01124444
Q ss_pred eeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCC
Q 007496 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 527 (601)
Q Consensus 448 rLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE 527 (601)
+.+...++++++..+.. .. ...+.|+|.+.+ +..+.+++.++++..+.++ ..+.+ ++|+|||||
T Consensus 121 ----~~v~~~~~~~lf~~l~~-~~--~v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~~~-~~~~~-i~GvQFHPE 184 (198)
T cd01748 121 ----NQLEITKESPLFKGIPD-GS--YFYFVHSYYAPP-------DDPDYILATTDYGGKFPAA-VEKDN-IFGTQFHPE 184 (198)
T ss_pred ----ceEEECCCChhhhCCCC-CC--eEEEEeEEEEec-------CCcceEEEEecCCCeEEEE-EEcCC-EEEEECCCc
Confidence 45555555455555542 22 346778888853 2235678877776534443 44556 669999999
Q ss_pred CcCCCCCchHHHHHHH
Q 007496 528 YKSRPGKPSPLFLGLI 543 (601)
Q Consensus 528 ~ss~p~~p~pLF~~Fv 543 (601)
++.. .+..++++|+
T Consensus 185 ~~~~--~g~~~~~nf~ 198 (198)
T cd01748 185 KSGK--AGLKLLKNFL 198 (198)
T ss_pred cccH--hHHHHHHhhC
Confidence 9843 5788888884
No 58
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.79 E-value=2.8e-18 Score=169.24 Aligned_cols=186 Identities=23% Similarity=0.221 Sum_probs=111.9
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch--
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~-- 377 (601)
|++| ||+.- +-.|+.++|+..|+++. ++... +.+.++|+||+||+ |++..
T Consensus 2 i~ii-d~g~~--n~~~v~~~l~~~g~~~~------~~~~~------------------~~l~~~d~lilPG~-g~~~~~~ 53 (201)
T PRK13152 2 IALI-DYKAG--NLNSVAKAFEKIGAINF------IAKNP------------------KDLQKADKLLLPGV-GSFKEAM 53 (201)
T ss_pred EEEE-ECCCC--cHHHHHHHHHHCCCeEE------EECCH------------------HHHcCCCEEEECCC-CchHHHH
Confidence 8899 69843 66899999999886532 22221 34678999999774 44321
Q ss_pred -----hHHHHHH-HHHHHcCCCEEEEehhHHHHHHH-h-ccccccccCCCCCccCCCCCCCeeeeC--CCCCcccCCCce
Q 007496 378 -----QGKILAA-KYAREHRIPYLGICLGMQVAVIE-F-ARSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGTM 447 (601)
Q Consensus 378 -----eg~i~ai-k~are~~iP~LGICLGmQllaie-f-grnV~gl~da~S~Ef~~~~~~pvi~~m--pe~~~~h~Ggtm 447 (601)
.+....+ +++.+.++|+||||+|||+|+.+ + ++.+-+|- .+ +..+..+- +....+|+||
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-----~~----~g~v~~~~~~~~~~~~~~g~-- 122 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-----FI----EGEVVKFEEDLNLKIPHMGW-- 122 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-----cc----cEEEEECCCCCCCcCCccCe--
Confidence 1223444 44567899999999999999875 1 11111110 01 11222210 0112356665
Q ss_pred eeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCC-eEEEEEECCCCcEEEEcccC
Q 007496 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHP 526 (601)
Q Consensus 448 rLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~-~vE~IE~~~hpffvGVQFHP 526 (601)
+++.+.+++.++..+. .. ....+.|+|.+... ...+++.++++. .+++++ + +.++|+||||
T Consensus 123 ----~~v~~~~~~~l~~~l~-~~--~~~~~vHS~~v~~~--------~~~v~a~~~~g~~~~~a~~--~-~~i~GvQFHP 184 (201)
T PRK13152 123 ----NELEILKQSPLYQGIP-EK--SDFYFVHSFYVKCK--------DEFVSAKAQYGHKFVASLQ--K-DNIFATQFHP 184 (201)
T ss_pred ----EEEEECCCChhhhCCC-CC--CeEEEEcccEeecC--------CCcEEEEECCCCEEEEEEe--c-CCEEEEeCCC
Confidence 5566666644444432 22 23467789888531 135677777764 244555 3 3477999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 007496 527 EYKSRPGKPSPLFLGLIA 544 (601)
Q Consensus 527 E~ss~p~~p~pLF~~Fv~ 544 (601)
|++.. ....||++|++
T Consensus 185 E~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 185 EKSQN--LGLKLLENFAR 200 (201)
T ss_pred eecCh--hhHHHHHHHHh
Confidence 98743 47889999975
No 59
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.78 E-value=3.8e-18 Score=165.63 Aligned_cols=139 Identities=23% Similarity=0.291 Sum_probs=98.1
Q ss_pred hccCCCEEEECCCCCCC---c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCee
Q 007496 359 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (601)
Q Consensus 359 ~L~~~DGIlvpGGfG~r---g---~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi 432 (601)
.+.++|||++|||+.+. . .......++++.++++|+||||+|||+++.++|++|...+.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~--------------- 107 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK--------------- 107 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC---------------
Confidence 46899999999998754 1 24577889999999999999999999999999998854220
Q ss_pred eeCCCCCcccCCCceeeCceeEEEccCCchhhhccCC-ceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEE
Q 007496 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 511 (601)
Q Consensus 433 ~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~-~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~I 511 (601)
| ...|.+++.+.+.. ....++.+ ...+...+.|+++|. .+ +.|++++++++++. ++++
T Consensus 108 -----------~--~~~g~~~v~~~~~~-~~~~l~~~~~~~~~v~~~H~~~v~-----~l-p~~~~~la~~~~~~-v~~~ 166 (188)
T cd01741 108 -----------G--WEIGWFPVTLTEAG-KADPLFAGLPDEFPVFHWHGDTVV-----EL-PPGAVLLASSEACP-NQAF 166 (188)
T ss_pred -----------c--ceeEEEEEEecccc-ccCchhhcCCCcceEEEEeccChh-----hC-CCCCEEeecCCCCC-cceE
Confidence 1 12245566655431 11112211 122345667777764 24 78899999998887 9999
Q ss_pred EECCCCcEEEEcccCCCcCCCCCchHHHHHHH
Q 007496 512 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLI 543 (601)
Q Consensus 512 E~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv 543 (601)
+.+ ..++|+||||| ..+|++|+
T Consensus 167 ~~~--~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 167 RYG--DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred Eec--CCEEEEccCch--------HHHHhhhC
Confidence 987 34779999999 56777763
No 60
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.78 E-value=3.1e-18 Score=174.10 Aligned_cols=200 Identities=16% Similarity=0.225 Sum_probs=119.8
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg- 376 (601)
|||+++. ++.++.++.++|+++|+++.. +.. + +.|.++|||+|||||++.-
T Consensus 2 m~igVLa----~qG~~~e~~~aL~~lG~ev~~------v~~-----------~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLA----LQGSFNEHIAALRRLGVEAVE------VRK-----------P-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEe----CCCchHHHHHHHHHCCCcEEE------eCC-----------H-------HHhccCCEEEeCCCHHHHHH
Confidence 6899996 445889999999999886532 221 1 4578999999999987631
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc------cccccccCCCCCccCCC-CCCCeeeeCCCCCcccCCC
Q 007496 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPN-TKNPCVIFMPEGSKTHMGG 445 (601)
Q Consensus 377 ----~eg~i~aik~are~~iP~LGICLGmQllaiefg------rnV~gl~da~S~Ef~~~-~~~pvi~~mpe~~~~h~Gg 445 (601)
..++...++.+.+.++|+||||+|||+|+-..- +..++.-+.. ...+ ....+..|-+..+.+||||
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~---v~RN~~g~qv~sfe~~l~ip~~gw 130 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCT---VHRNFFGSQINSFETELPVPELAA 130 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccce---EEecccCceeEeEEcCCcCCcccc
Confidence 125777888887889999999999999986541 1112222210 0011 1233344434456789998
Q ss_pred cee-eCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCC--eEEEEEECCCCcEEEE
Q 007496 446 TMR-LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ--RMEIVELPNHPYFIGV 522 (601)
Q Consensus 446 tmr-LG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~--~vE~IE~~~hpffvGV 522 (601)
+.- ....+..+... +.+... +.. .+.-|+|.++++... ...++++.|. .+.+++ ...++|+
T Consensus 131 n~~~~~~~~~vFira-p~i~~~-~~~----v~~l~sy~~~~~~~~-------~~~a~~~y~~~~~~~aV~---qgnvlat 194 (248)
T PLN02832 131 SEGGPETFRAVFIRA-PAILSV-GPG----VEVLAEYPLPSEKAL-------YSSSTDAEGRDKVIVAVK---QGNLLAT 194 (248)
T ss_pred ccccccccceEEecC-CceEeC-CCc----EEEEEEecccccccc-------cccccccccCCceEEEEE---eCCEEEE
Confidence 631 11222333332 222111 111 244578876553211 1233343332 233343 3347899
Q ss_pred cccCCCcCCCCCchHHHHHHHHHHhc
Q 007496 523 QFHPEYKSRPGKPSPLFLGLIAAACG 548 (601)
Q Consensus 523 QFHPE~ss~p~~p~pLF~~Fv~aa~~ 548 (601)
|||||+++.. .++++|++.+..
T Consensus 195 qFHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 195 AFHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred EccCccCCcc----HHHHHHHHHHHH
Confidence 9999999876 888899988754
No 61
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.78 E-value=8e-18 Score=165.83 Aligned_cols=191 Identities=17% Similarity=0.233 Sum_probs=112.7
Q ss_pred eEEEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-
Q 007496 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r- 375 (601)
||||++- +....+.| .++.++|+..|.++.+ .++... +.+.++|+|++|||++..
T Consensus 1 ~~i~vl~-~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~~------------------~~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 1 MKIGVLA-LQGDVEEHIDALKRALDELGIDGEV----VEVRRP------------------GDLPDCDALIIPGGESTTI 57 (200)
T ss_pred CEEEEEE-ECCccHHHHHHHHHHHHhcCCCeEE----EEeCCh------------------HHhccCCEEEECCCcHHHH
Confidence 4677662 33233334 3677888888876443 343321 346789999999998764
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc-cccccCCCCCccCCCCCCCeeeeCCC-CCcccCCCceee
Q 007496 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS-VLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRL 449 (601)
Q Consensus 376 ----g~eg~i~aik~are~~iP~LGICLGmQllaiefgrn-V~gl~da~S~Ef~~~~~~pvi~~mpe-~~~~h~GgtmrL 449 (601)
...+....++.+.++++|+||||+|||+|+.++++. +.+. . .+.+-.+|- ......|+...
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~---~---------~~~lG~~~~~v~~~~~g~~~~- 124 (200)
T PRK13527 58 GRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKT---E---------QPLLGLMDVTVKRNAFGRQRD- 124 (200)
T ss_pred HHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCC---C---------CceeeeeEEEEeeccccCccc-
Confidence 223567888888889999999999999999998763 3211 0 011111110 00001121100
Q ss_pred CceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCc
Q 007496 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 529 (601)
Q Consensus 450 G~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~s 529 (601)
..... .++..+ ++. ....+.|++.+. .+ +++++++|.++++. ++++. . .++|+|||||++
T Consensus 125 -~~~~~-----~~~~~~-~~~--~~~~~~H~~~v~-----~l-p~~~~~la~~~~~~--~a~~~--~-~~~g~QfHPE~~ 184 (200)
T PRK13527 125 -SFEAE-----IDLSGL-DGP--FHAVFIRAPAIT-----KV-GGDVEVLAKLDDRI--VAVEQ--G-NVLATAFHPELT 184 (200)
T ss_pred -cEEEe-----Eecccc-CCc--ceEEEEcccccc-----cc-CCCeEEEEEECCEE--EEEEE--C-CEEEEEeCCCCC
Confidence 00000 111111 112 222344665553 34 68999999988763 46653 3 477999999987
Q ss_pred CCCCCchHHHHHHHHHHhc
Q 007496 530 SRPGKPSPLFLGLIAAACG 548 (601)
Q Consensus 530 s~p~~p~pLF~~Fv~aa~~ 548 (601)
.. ..+|++|++++.+
T Consensus 185 ~~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 185 DD----TRIHEYFLKKVKG 199 (200)
T ss_pred CC----CHHHHHHHHHHhc
Confidence 54 5899999998864
No 62
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.78 E-value=2.1e-18 Score=169.55 Aligned_cols=176 Identities=20% Similarity=0.240 Sum_probs=108.8
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc--h
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--V 377 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg--~ 377 (601)
|+|+ +|+.. +..|+.+||++.|+++. |+... +.+.++|+||+||+ |+.. .
T Consensus 2 i~ii-dyg~g--N~~s~~~al~~~g~~~~------~v~~~------------------~~l~~~D~lIlPG~-g~~~~~~ 53 (192)
T PRK13142 2 IVIV-DYGLG--NISNVKRAIEHLGYEVV------VSNTS------------------KIIDQAETIILPGV-GHFKDAM 53 (192)
T ss_pred EEEE-EcCCc--cHHHHHHHHHHcCCCEE------EEeCH------------------HHhccCCEEEECCC-CCHHHHH
Confidence 8899 69854 88999999999887643 33322 45778999999995 3321 1
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc-cccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCc
Q 007496 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFA-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (601)
Q Consensus 378 -----eg~i~aik~are~~iP~LGICLGmQllaiefg-rnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~ 451 (601)
.++.++++. ..++|+||||+|||+|+-..- +.+-||- -.+..|..|-++.+.+||||+..-
T Consensus 54 ~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLg---------ll~~~V~rf~~~~~vph~GWn~~~-- 120 (192)
T PRK13142 54 SEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLG---------FIPGNISRIQTEYPVPHLGWNNLV-- 120 (192)
T ss_pred HHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccC---------ceeEEEEECCCCCCCCcccccccC--
Confidence 134555655 468999999999999985530 1111110 012334444333467999996421
Q ss_pred eeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCC-eEEEEEECCCCcEEEEcccCCCcC
Q 007496 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHPEYKS 530 (601)
Q Consensus 452 ~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~-~vE~IE~~~hpffvGVQFHPE~ss 530 (601)
...+ ++. -+.++-|+|.+. . ... +.+.+..|. .+.+++ +..++|+|||||++.
T Consensus 121 ------~~~~----l~~----~~~yFVhSy~v~-~------~~~--v~~~~~yg~~~~~~v~---~~n~~g~QFHPEkS~ 174 (192)
T PRK13142 121 ------SKHP----MLN----QDVYFVHSYQAP-M------SEN--VIAYAQYGADIPAIVQ---FNNYIGIQFHPEKSG 174 (192)
T ss_pred ------CCCc----ccc----cEEEEECCCeEC-C------CCC--EEEEEECCCeEEEEEE---cCCEEEEecCcccCc
Confidence 1112 121 135788999883 1 122 334444444 344443 334779999999987
Q ss_pred CCCCchHHHHHHHH
Q 007496 531 RPGKPSPLFLGLIA 544 (601)
Q Consensus 531 ~p~~p~pLF~~Fv~ 544 (601)
.. +..++++|++
T Consensus 175 ~~--G~~ll~nf~~ 186 (192)
T PRK13142 175 TY--GLQILRQAIQ 186 (192)
T ss_pred Hh--HHHHHHHHHh
Confidence 54 7899999965
No 63
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.78 E-value=3.9e-18 Score=172.71 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=96.2
Q ss_pred ccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeee
Q 007496 360 LKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~ 434 (601)
+.++|||||+||+.+. ........++.+.+.++|+||||+|||+|+.++|++|..-+.
T Consensus 52 ~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~----------------- 114 (237)
T PRK09065 52 PDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPA----------------- 114 (237)
T ss_pred hhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCC-----------------
Confidence 5689999999998753 134567788888889999999999999999999999853110
Q ss_pred CCCCCcccCCCceeeCceeEEEccC---CchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEE
Q 007496 435 MPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 511 (601)
Q Consensus 435 mpe~~~~h~GgtmrLG~~~v~l~~~---~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~I 511 (601)
|+ ..|.+++.+.+. ++++..+. .... ..+.|+++| ..+ +.|++++++++++. ++++
T Consensus 115 ---------g~--e~G~~~v~~~~~~~~~~l~~~~~-~~~~--v~~~H~d~v-----~~l-p~~~~~la~s~~~~-iqa~ 173 (237)
T PRK09065 115 ---------GR--ESGTVTVELHPAAADDPLFAGLP-AQFP--AHLTHLQSV-----LRL-PPGAVVLARSAQDP-HQAF 173 (237)
T ss_pred ---------CC--ccceEEEEEccccccChhhhcCC-ccCc--Eeeehhhhh-----hhC-CCCCEEEEcCCCCC-eeEE
Confidence 11 123455655442 12333322 2222 344565544 344 78999999998887 9999
Q ss_pred EECCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007496 512 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 545 (601)
Q Consensus 512 E~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~a 545 (601)
++.++ ++|+|||||++ ...+..+++.
T Consensus 174 ~~~~~--i~gvQfHPE~~------~~~~~~~~~~ 199 (237)
T PRK09065 174 RYGPH--AWGVQFHPEFT------AHIMRAYLRA 199 (237)
T ss_pred EeCCC--EEEEEeCCcCC------HHHHHHHHHh
Confidence 99763 67999999975 2455555553
No 64
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.77 E-value=1.2e-17 Score=169.50 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=119.0
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r 375 (601)
.+++|.++-.|..- .-.++.+.|+..|.++.+. .....+.. | +.+.++||+||+||+++.
T Consensus 6 ~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~----~~~~~~~~-------p-------~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 6 DKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIR----RPRLGDPL-------P-------DTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CCceEEEEecCCCC--CChHHHHHHHHCCCceEEE----eccCCCCC-------C-------CcccccCEEEEECCCCCC
Confidence 45788888655422 3346788888888876542 11111111 1 346789999999998864
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeC
Q 007496 376 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (601)
Q Consensus 376 g-----~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 450 (601)
. ....++.++.+.+.++|+||||+|||+|+.++|++|.+.+. | ....|
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~--------------------------G-~~e~G 118 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPD--------------------------G-RVEIG 118 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCC--------------------------C-CCccc
Confidence 2 23456778888889999999999999999999999964220 1 11223
Q ss_pred ceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcC
Q 007496 451 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (601)
Q Consensus 451 ~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss 530 (601)
.+++.+.+....+..+ ... .+|.|++.+ .+ ++|+++++.++++. ++++++.++ ++|+|||||++
T Consensus 119 ~~~i~~~~~~~~~~~~---~~~--~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~~--v~g~QfHPE~~- 182 (239)
T PRK06490 119 YYPLRPTEAGRALMHW---PEM--VYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGDN--AWGLQFHPEVT- 182 (239)
T ss_pred eEEeEECCCcccccCC---CCE--EEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCCC--EEEEeeCccCC-
Confidence 4556555432222111 112 345566542 34 78899999998887 899999663 67999999987
Q ss_pred CCCCchHHHHHHHH
Q 007496 531 RPGKPSPLFLGLIA 544 (601)
Q Consensus 531 ~p~~p~pLF~~Fv~ 544 (601)
..++..++.
T Consensus 183 -----~~~~~~~i~ 191 (239)
T PRK06490 183 -----RAMMHRWVV 191 (239)
T ss_pred -----HHHHHHHHH
Confidence 355566654
No 65
>PRK05665 amidotransferase; Provisional
Probab=99.76 E-value=2.2e-17 Score=167.63 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=91.6
Q ss_pred ccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeee
Q 007496 360 LKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~ 434 (601)
+.++|||||+||+.+. .+....+.++.+.++++|+||||+|||+|+.++|++|..-+
T Consensus 55 ~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~------------------ 116 (240)
T PRK05665 55 DEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERAS------------------ 116 (240)
T ss_pred cccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCC------------------
Confidence 5689999999997653 23556677888888899999999999999999999995311
Q ss_pred CCCCCcccCCCceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEEC
Q 007496 435 MPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELP 514 (601)
Q Consensus 435 mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~ 514 (601)
.|+ ..|.+++.+.+...++..+. ....+ .+.|+ +.+..| +.|++++|.++.+. +++++..
T Consensus 117 --------~G~--e~G~~~~~~~~~~~~~~~~~-~~~~~--~~~H~-----D~V~~L-P~ga~~La~s~~~~-~q~~~~~ 176 (240)
T PRK05665 117 --------QGW--GVGIHRYQLAAHAPWMSPAV-TELTL--LISHQ-----DQVTAL-PEGATVIASSDFCP-FAAYHIG 176 (240)
T ss_pred --------CCc--ccceEEEEecCCCccccCCC-CceEE--EEEcC-----CeeeeC-CCCcEEEEeCCCCc-EEEEEeC
Confidence 122 12344444443322222221 12233 44555 334455 88999999988877 9999886
Q ss_pred CCCcEEEEcccCCCcCC
Q 007496 515 NHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 515 ~hpffvGVQFHPE~ss~ 531 (601)
++ ++|+|||||++..
T Consensus 177 ~~--~~g~QfHPE~~~~ 191 (240)
T PRK05665 177 DQ--VLCFQGHPEFVHD 191 (240)
T ss_pred CC--EEEEecCCcCcHH
Confidence 54 6799999999855
No 66
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.76 E-value=1.5e-17 Score=162.89 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=113.4
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg- 376 (601)
|+|+|+. ++.+|.|..++|+.+|+++.. ++.. +.+.++|||++|||++..-
T Consensus 2 m~~~i~~----~~g~~~~~~~~l~~~g~~~~~------~~~~------------------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLA----LQGAVREHLAALEALGAEAVE------VRRP------------------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEE----cccCHHHHHHHHHHCCCEEEE------eCCh------------------hHhccCCEEEECCCChHHHH
Confidence 6788885 334888889999998876432 2211 3467899999999986431
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCce
Q 007496 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (601)
Q Consensus 377 ----~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 452 (601)
......+++.+.++++|+||||+|+|+|+.++++.. .+ +.+- .+..+. . ...|+.. |..
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~--~~-----~lg~-~~~~v~-~------~~~g~~~--g~~ 116 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYE--QE-----HLGL-LDITVR-R------NAFGRQV--DSF 116 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCC--CC-----ceee-EEEEEE-E------ccCCCce--eeE
Confidence 123456788888899999999999999998887641 00 1100 000000 0 1112211 111
Q ss_pred eEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCC
Q 007496 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 532 (601)
Q Consensus 453 ~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p 532 (601)
... .++..+ +. ....++.|.++| ..+ +++++++|.++ +. +++++. . .++|+|||||++..
T Consensus 117 ~~~-----~~~~~~-~~--~~~~~~~H~d~v-----~~l-p~~~~vlA~~~-~~-~~~~~~--~-~~~g~QfHPE~~~~- 176 (189)
T PRK13525 117 EAE-----LDIKGL-GE--PFPAVFIRAPYI-----EEV-GPGVEVLATVG-GR-IVAVRQ--G-NILATSFHPELTDD- 176 (189)
T ss_pred Eec-----ccccCC-CC--CeEEEEEeCcee-----ecc-CCCcEEEEEcC-CE-EEEEEe--C-CEEEEEeCCccCCC-
Confidence 111 112222 11 233466676655 344 68899999975 33 566653 2 47799999999764
Q ss_pred CCchHHHHHHHHHHh
Q 007496 533 GKPSPLFLGLIAAAC 547 (601)
Q Consensus 533 ~~p~pLF~~Fv~aa~ 547 (601)
..||++|++.|.
T Consensus 177 ---~~~~~~f~~~~~ 188 (189)
T PRK13525 177 ---TRVHRYFLEMVK 188 (189)
T ss_pred ---chHHHHHHHHhh
Confidence 589999999875
No 67
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.76 E-value=1.7e-17 Score=167.91 Aligned_cols=172 Identities=19% Similarity=0.175 Sum_probs=113.9
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC--
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r-- 375 (601)
.+|.++ ...... .-.++.++|+..|..+.+ ......+... ..+.++|||||+||+...
T Consensus 3 ~~ilvi-qh~~~e-~~g~i~~~L~~~g~~~~v----~~~~~~~~~~--------------~~~~~~d~lii~Ggp~~~~d 62 (234)
T PRK07053 3 KTAVAI-RHVAFE-DLGSFEQVLGARGYRVRY----VDVGVDDLET--------------LDALEPDLLVVLGGPIGVYD 62 (234)
T ss_pred ceEEEE-ECCCCC-CChHHHHHHHHCCCeEEE----EecCCCccCC--------------CCccCCCEEEECCCCCCCCC
Confidence 357777 444333 446789999999876543 2222222111 235689999999997532
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeC
Q 007496 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (601)
Q Consensus 376 -----g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 450 (601)
.....+..++.+.+.++|+||||+|||+++.++|++|..- ...++|
T Consensus 63 ~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-----------------------------~~~e~G 113 (234)
T PRK07053 63 DELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPG-----------------------------GQKEIG 113 (234)
T ss_pred CCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecC-----------------------------CCCeEe
Confidence 2356778889899999999999999999999999998431 012334
Q ss_pred ceeEEEccCC--chhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCC
Q 007496 451 SRRTYFQIKD--CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 528 (601)
Q Consensus 451 ~~~v~l~~~~--s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ 528 (601)
..++.+.+.. ..+..+. ......|.|++.+. + ++|.+.++.++... ++++...+ + ++|+|||||+
T Consensus 114 ~~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~~------l-P~ga~~La~s~~~~-~qaf~~g~-~-~~g~QfHpE~ 180 (234)
T PRK07053 114 WAPLTLTDAGRASPLRHLG---AGTPVLHWHGDTFD------L-PEGATLLASTPACR-HQAFAWGN-H-VLALQFHPEA 180 (234)
T ss_pred EEEEEEeccccCChhhcCC---CcceEEEEeCCEEe------c-CCCCEEEEcCCCCC-eeEEEeCC-C-EEEEeeCccC
Confidence 5566554321 1222332 12345666766552 3 78999999988776 89998854 3 6799999998
Q ss_pred cCC
Q 007496 529 KSR 531 (601)
Q Consensus 529 ss~ 531 (601)
++.
T Consensus 181 ~~~ 183 (234)
T PRK07053 181 RED 183 (234)
T ss_pred CHH
Confidence 743
No 68
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.75 E-value=2.3e-17 Score=162.33 Aligned_cols=187 Identities=19% Similarity=0.201 Sum_probs=109.0
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh-
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ- 378 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e- 378 (601)
|+|| +|+.- +-.++.++|+..|+++.+. . .+ +.++++|+|++|| +|++...
T Consensus 1 ~~~~-~~~~g--n~~~l~~~l~~~g~~v~v~----~--~~------------------~~l~~~d~lii~G-~~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYGVG--NLGSVKRALKRVGAEPVVV----K--DS------------------KEAELADKLILPG-VGAFGAAM 52 (196)
T ss_pred CEEE-ecCCc--HHHHHHHHHHHCCCcEEEE----c--CH------------------HHhccCCEEEECC-CCCHHHHH
Confidence 5778 58743 6679999999999875442 1 11 3467899999988 3443211
Q ss_pred ----HH-HHHH-HHHHHcCCCEEEEehhHHHHHHHh--ccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeC
Q 007496 379 ----GK-ILAA-KYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (601)
Q Consensus 379 ----g~-i~ai-k~are~~iP~LGICLGmQllaief--grnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 450 (601)
.. +..+ +.+.+.++|+||||+|||+|+-++ ++++-+|. -++ .. +..++....+++|++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg-----~~~----~~-v~~~~~~~~~~~g~~---- 118 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLG-----LIK----GN-VVKLEARKVPHMGWN---- 118 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcc-----eee----EE-EEECCCCCCCcccCe----
Confidence 10 3344 777788999999999999998763 11111110 000 00 111111122344543
Q ss_pred ceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcC
Q 007496 451 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (601)
Q Consensus 451 ~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss 530 (601)
.+.....++++..+.. . ....+.|+|++.+. + +. +++.++++..+.+ .....+ ++|+|||||++.
T Consensus 119 --~~~~~~~~~l~~~l~~-~--~~v~~~Hs~~v~~~------~-~~-~~a~~~~g~~~~~-~~~~~~-i~GvQFHPE~~~ 183 (196)
T TIGR01855 119 --EVHPVKESPLLNGIDE-G--AYFYFVHSYYAVCE------E-EA-VLAYADYGEKFPA-AVQKGN-IFGTQFHPEKSG 183 (196)
T ss_pred --eeeeCCCChHHhCCCC-C--CEEEEECeeEecCC------C-Cc-EEEEEcCCcEEEE-EEecCC-EEEEECCCccCc
Confidence 2333333345554432 2 24567899998642 1 33 5565666653443 344556 669999999773
Q ss_pred CCCCchHHHHHHHHH
Q 007496 531 RPGKPSPLFLGLIAA 545 (601)
Q Consensus 531 ~p~~p~pLF~~Fv~a 545 (601)
.....++++|+++
T Consensus 184 --~~g~~ll~~f~~~ 196 (196)
T TIGR01855 184 --KTGLKLLENFLEL 196 (196)
T ss_pred --HhHHHHHHHHHhC
Confidence 3578999999863
No 69
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=165.16 Aligned_cols=181 Identities=23% Similarity=0.229 Sum_probs=116.8
Q ss_pred EEEEEcccCCCcchHHHHHHHHHHcc-ccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 299 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL~~ag-~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
+|.|+ +++.- ...-|.+.++..| ..+.+ ..|..+. ++ -...++|||+|+|||-+...
T Consensus 3 ~ilIl-d~g~q--~~~li~r~~re~g~v~~e~---~~~~~~~--~~--------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGGQ--YLGLIARRLRELGYVYSEI---VPYTGDA--EE--------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCCc--HhHHHHHHHHHcCCceEEE---EeCCCCc--cc--------------ccccCCCEEEEcCCCCCCcc
Confidence 68888 46641 3346778888888 44332 1222111 10 12346699999999955332
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCce
Q 007496 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (601)
Q Consensus 378 -----eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 452 (601)
......|+.+...++|+||||+|||+|+.++|++|..-. ..| .|..
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~---~~E--------------------------~G~~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGP---KRE--------------------------IGWT 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccC---CCc--------------------------cceE
Confidence 333444555544556699999999999999999995311 123 3456
Q ss_pred eEEEcc-CCchhhhccCCce-eEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcC
Q 007496 453 RTYFQI-KDCKSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (601)
Q Consensus 453 ~v~l~~-~~s~l~~lyg~~~-~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss 530 (601)
++.+.+ ...++..+.. .. .++.+|. +.+.++ +.|++++|.+++.. ++++++. .+ ++|+|||||++.
T Consensus 112 ~v~~~~~~~~l~~gl~~-~~~~v~~sH~-------D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 112 PVELTEGDDPLFAGLPD-LFTTVFMSHG-------DTVVEL-PEGAVVLASSETCP-NQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred EEEEecCccccccCCcc-ccCccccchh-------CccccC-CCCCEEEecCCCCh-hhheecC-Cc-EEEEeeeeEEeH
Confidence 676653 2134444432 22 2555554 666666 89999999988776 8999988 55 569999999987
Q ss_pred CCCCchHHHHHHHH
Q 007496 531 RPGKPSPLFLGLIA 544 (601)
Q Consensus 531 ~p~~p~pLF~~Fv~ 544 (601)
.....++++|..
T Consensus 180 --~~~~~~l~nf~~ 191 (198)
T COG0518 180 --EYGEALLENFAH 191 (198)
T ss_pred --HHHHHHHHHhhh
Confidence 336678888875
No 70
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.74 E-value=3.7e-17 Score=166.15 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=103.5
Q ss_pred HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch------h-------HH
Q 007496 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV------Q-------GK 380 (601)
Q Consensus 314 ~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~------e-------g~ 380 (601)
.++.+.|+..+..... +...+....++.+ ..+.++|||||+||+++... . ..
T Consensus 18 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i 82 (242)
T PRK07567 18 AEYAAFLRYTGLDPAE-LRRIRLDREPLPD--------------LDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAEL 82 (242)
T ss_pred chHHHHHHhcCCCccc-eEEEecccCCCCC--------------CCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHH
Confidence 3556777777765321 2233433332211 13578999999999865421 1 12
Q ss_pred HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccC-
Q 007496 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK- 459 (601)
Q Consensus 381 i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~- 459 (601)
..+++.+.+.++|+||||+|||+|+.++|++|.+ . . |+ ..|.+++.+.+.
T Consensus 83 ~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~------------------------g~--e~G~~~v~l~~~g 133 (242)
T PRK07567 83 SGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--Y------------------------GE--PVGAVTVSLTDAG 133 (242)
T ss_pred HHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--C------------------------CC--cCccEEEEECCcc
Confidence 3466777789999999999999999999999853 1 0 11 123456665432
Q ss_pred --CchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCC
Q 007496 460 --DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 460 --~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~ 531 (601)
++++..+. .. ....|.|++.| ..+ ++|+++++.++++. ++++++.++ ++|+|||||++..
T Consensus 134 ~~~~l~~~~~-~~--~~~~~~H~d~V-----~~l-p~~~~vlA~s~~~~-vqa~~~~~~--~~gvQfHPE~~~~ 195 (242)
T PRK07567 134 RADPLLAGLP-DT--FTAFVGHKEAV-----SAL-PPGAVLLATSPTCP-VQMFRVGEN--VYATQFHPELDAD 195 (242)
T ss_pred CCChhhcCCC-Cc--eEEEeehhhhh-----hhC-CCCCEEEEeCCCCC-EEEEEeCCC--EEEEEeCCcCCHH
Confidence 12333332 12 33456676554 345 78999999998876 999998654 6699999998643
No 71
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.73 E-value=9.1e-17 Score=179.40 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=125.4
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg 376 (601)
..+|+++ +|+.. +..|+.++|+..|+++ .|+... +.+.++|+||+||| |+.+
T Consensus 6 ~~~i~ii-DyG~G--N~~sl~~al~~~G~~v------~~v~~~------------------~~l~~~D~lIlpG~-gs~~ 57 (538)
T PLN02617 6 DSEVTLL-DYGAG--NVRSVRNAIRHLGFTI------KDVQTP------------------EDILNADRLIFPGV-GAFG 57 (538)
T ss_pred CCeEEEE-ECCCC--CHHHHHHHHHHCCCeE------EEECCh------------------hhhccCCEEEECCC-CCHH
Confidence 4689999 69854 7789999999998764 233321 34689999999985 3322
Q ss_pred h-------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--cccccccCCCCCccCCCCCCCeeeeC--CCCCcccCCC
Q 007496 377 V-------QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGG 445 (601)
Q Consensus 377 ~-------eg~i~aik~are~~iP~LGICLGmQllaiefg--rnV~gl~da~S~Ef~~~~~~pvi~~m--pe~~~~h~Gg 445 (601)
. .+....++.+.+.++|+||||+|||+|+..+. +.+.++.- .+..+..+- ++...+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~---------l~G~v~~~~~~~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGV---------IPGVVGRFDSSNGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCccc---------ccceEEECCccCCCCCCeecc
Confidence 1 34677888888899999999999999987541 11212110 011122210 0124578887
Q ss_pred ceeeCceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCC-CeEEEEEECCCCcEEEEcc
Q 007496 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS-QRMEIVELPNHPYFIGVQF 524 (601)
Q Consensus 446 tmrLG~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg-~~vE~IE~~~hpffvGVQF 524 (601)
+ ++...++++++..+ + ... .++.|+|.+.+.. ..+..+.+.++.+ ..+++++.. +++|+||
T Consensus 129 ~------~V~~~~~spL~~~l-~-~~~--vy~vHSy~v~~~p-----~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQF 190 (538)
T PLN02617 129 N------ALQITKDSELLDGV-G-GRH--VYFVHSYRATPSD-----ENKDWVLATCNYGGEFIASVRKG---NVHAVQF 190 (538)
T ss_pred e------EEEecCCChhHhcC-C-CcE--EEEEeEEEEEecC-----CCCcEEEEEEccCCCcEEEEEeC---CEEEEEc
Confidence 4 34444554555555 3 222 4677999864311 1233344555432 358889853 4779999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhcch
Q 007496 525 HPEYKSRPGKPSPLFLGLIAAACGQL 550 (601)
Q Consensus 525 HPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (601)
|||++. .....+|++|++.+...+
T Consensus 191 HPE~s~--~~G~~L~~nFl~~~~~~~ 214 (538)
T PLN02617 191 HPEKSG--ATGLSILRRFLEPKSSAT 214 (538)
T ss_pred CCccCc--hhHHHHHHHHHHhhhhhh
Confidence 999986 246799999998877544
No 72
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.72 E-value=1.6e-16 Score=160.00 Aligned_cols=194 Identities=23% Similarity=0.305 Sum_probs=121.4
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC--C
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~--r 375 (601)
+||+|+ +|.... .-.++.++|+.+|+.+.. .|.+.. .+.++|+|+||||+.. .
T Consensus 1 ~~v~Vl-~~~G~n-~~~~~~~al~~~G~~~~~----i~~~~~-------------------~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGTN-CDRDTVYALRLLGVDAEI----VWYEDG-------------------SLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCcC-cHHHHHHHHHHCCCeEEE----EecCCC-------------------CCCCCCEEEECCCCccccc
Confidence 589999 474321 335778999999987533 344321 2568999999999742 1
Q ss_pred -------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCc
Q 007496 376 -------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (601)
Q Consensus 376 -------g~eg~i~aik~are~~iP~LGICLGmQllaie--fgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt 446 (601)
.....+..++.+.+.++|+||||.|+|+|+.+ +.+.+. ...+.+|.. +|
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~---~n~~~~~~~------------------~~- 113 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALL---PNDSLRFIC------------------RW- 113 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCcee---ecCCCceEE------------------Ee-
Confidence 12335677888888999999999999999863 332221 011112110 01
Q ss_pred eeeCceeEEEccCCchh-hhccCCce-eEeeee-ceeeeeChhhHhhhccCCeEEEEE-e----------CCCC--eEEE
Q 007496 447 MRLGSRRTYFQIKDCKS-AKLYGNRT-FIDERH-RHRYEVNPDMIARLENAGLSFTGK-D----------ETSQ--RMEI 510 (601)
Q Consensus 447 mrLG~~~v~l~~~~s~l-~~lyg~~~-~I~erh-rHrYeVn~~~v~~le~~Gl~~~g~-s----------~dg~--~vE~ 510 (601)
..+++.++.+.+ ..+-.+.. .+..+| .|||.++++.+++|++.+..+... + ++|. .+++
T Consensus 114 -----~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~ 188 (227)
T TIGR01737 114 -----VYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAG 188 (227)
T ss_pred -----EEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcc
Confidence 112222222333 33321221 222356 469999999888887777644333 3 5552 4888
Q ss_pred EEECCCCcEEEEcccCCCcC----CCCCchHHHHHHHH
Q 007496 511 VELPNHPYFIGVQFHPEYKS----RPGKPSPLFLGLIA 544 (601)
Q Consensus 511 IE~~~hpffvGVQFHPE~ss----~p~~p~pLF~~Fv~ 544 (601)
+..++.+. +|+|||||... .+.++..+|++|++
T Consensus 189 i~~~~~~~-~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 189 IVNERGNV-LGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred cCCCCCCE-EEEecCchhhcccccCCcccHHHHHHHHh
Confidence 99999985 59999999984 33468899999975
No 73
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.3e-17 Score=173.50 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=124.6
Q ss_pred CceEEEEEcccCCCcchHH-HHHHHHHHc-cccceeEEEEEeecCCCcccccccCCchhhhHHHHhccC---CCEEEECC
Q 007496 296 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG---ADGILVPG 370 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~-SIi~aL~~a-g~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~---~DGIlvpG 370 (601)
.++++.+++.|. +|. ++.++|..+ +..+.+.+...|+-+ ++|+.+.+ +|+|+|.+
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 458999998776 665 788888876 444433333344322 24555544 99999999
Q ss_pred CCCCCchhHHHHHHHHHHH--cCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCcee
Q 007496 371 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (601)
Q Consensus 371 GfG~rg~eg~i~aik~are--~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Ggtmr 448 (601)
|||.|.-..-+..+....+ +.+|+||||||||.|+++.|+.|.-. | + +..|-
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~~---n-------~-------------p~HGr--- 126 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHA---N-------E-------------PVHGR--- 126 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceecC---C-------C-------------cccce---
Confidence 9999943222333333332 25999999999999999999887421 1 0 11111
Q ss_pred eCceeEEEccCCchhhhccCCc--eeEeeeeceeeeeChhhHhhhccCCeEEEEEe--CCCCeEEEEEECCCCcEEEEcc
Q 007496 449 LGSRRTYFQIKDCKSAKLYGNR--TFIDERHRHRYEVNPDMIARLENAGLSFTGKD--ETSQRMEIVELPNHPYFIGVQF 524 (601)
Q Consensus 449 LG~~~v~l~~~~s~l~~lyg~~--~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s--~dg~~vE~IE~~~hpffvGVQF 524 (601)
.+.+... ++-++..+..+. ..-..|+ |+..+|+.-++.+ .++.+. ++|-.++.+.+.+.||| |+||
T Consensus 127 --vs~i~~~-~~~~f~gi~sg~~~~fK~~RY-HSL~in~~pid~l-----~il~t~~ddng~ilMsi~~~~fPhf-G~qy 196 (767)
T KOG1224|consen 127 --VSGIEHD-GNILFSGIPSGRNSDFKVVRY-HSLIINSLPIDLL-----PILWTIYDDNGHILMSIMHSSFPHF-GLQY 196 (767)
T ss_pred --eeeEEec-CcEEEccCCCCCcccceeEEe-EEEEecCCchhhh-----cceeEeecCCceEEEEeeccCCCcc-ceee
Confidence 0111111 112233333221 1112566 8999998766554 344443 44558899999999998 9999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhc
Q 007496 525 HPEYKSRPGKPSPLFLGLIAAACG 548 (601)
Q Consensus 525 HPE~ss~p~~p~pLF~~Fv~aa~~ 548 (601)
|||..... .+..||++|++.+..
T Consensus 197 HPES~~s~-~g~~lfkNFl~lt~~ 219 (767)
T KOG1224|consen 197 HPESIAST-YGSQLFKNFLDLTVN 219 (767)
T ss_pred ChHHhhhh-hhHHHHHHHHHhhcc
Confidence 99987665 478999999998853
No 74
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.69 E-value=2.9e-16 Score=148.47 Aligned_cols=194 Identities=19% Similarity=0.271 Sum_probs=126.8
Q ss_pred EEEEEcccCCCcchHHHHHHHH-HHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 299 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL-~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
.|.++++|.++. | ++.+.| -..|+. +.+..-|. +.-+. -.-.+++++++++|||.|..
T Consensus 20 piv~IDNYDSFT--~-Nv~qYL~~e~g~~----~~VyRNDe--iTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT--Y-NLCQYLMGELGCH----FEVYRNDE--LTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh--H-HHHHHhhhccCcc----EEEEecCc--ccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 488898888652 2 667777 333443 33344332 22100 11258999999999999986
Q ss_pred hHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEE
Q 007496 378 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (601)
Q Consensus 378 eg~-i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 456 (601)
.|. .+++++. ..++|+||||+|.|++.-+||++|.. ..|. ++. |-+ .++.-
T Consensus 79 sGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~------a~~~------i~H----------GK~-----S~i~~ 130 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVR------SPFG------VMH----------GKS-----SMVHY 130 (223)
T ss_pred ccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEec------cCcc------eee----------ccc-----ccccc
Confidence 554 3455554 45899999999999999999999832 1121 000 110 01100
Q ss_pred cc-C-CchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCC
Q 007496 457 QI-K-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 534 (601)
Q Consensus 457 ~~-~-~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~ 534 (601)
.. + ..++..+. +..+.+|+ |+.+...+.++ ...|+++++.+||. +++.+++.+..+-|||||||.--.. .
T Consensus 131 D~~~~~G~f~g~~--q~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIlte-e 202 (223)
T KOG0026|consen 131 DEKGEEGLFSGLS--NPFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESIITT-E 202 (223)
T ss_pred CCccccccccCCC--CCeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhhhh-h
Confidence 00 0 02233333 33455777 88887766553 36799999999997 9999999998888999999977554 4
Q ss_pred chHHHHHHHHHHhcc
Q 007496 535 PSPLFLGLIAAACGQ 549 (601)
Q Consensus 535 p~pLF~~Fv~aa~~~ 549 (601)
++-+.++|++...+.
T Consensus 203 Gk~~irNflni~~~t 217 (223)
T KOG0026|consen 203 GKTIVRNFIKIVEKK 217 (223)
T ss_pred hHHHHHHHHHhcccc
Confidence 788899999887654
No 75
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.69 E-value=4.5e-16 Score=152.14 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=105.0
Q ss_pred EEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC---
Q 007496 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r--- 375 (601)
||+++. ++.+|.|..++|+++|+++.. +... +.+.++|+|+||||++..
T Consensus 1 ~igvl~----~qg~~~e~~~~l~~~g~~~~~------v~~~------------------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLA----LQGAVREHARALEALGVEGVE------VKRP------------------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEE----ccCCHHHHHHHHHHCCCEEEE------ECCh------------------HHhccCCEEEECCCCHHHHHH
Confidence 466664 445889999999999976432 3221 347789999999998663
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCC-CCcccCCCceeeCce
Q 007496 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSR 452 (601)
Q Consensus 376 --g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe-~~~~h~GgtmrLG~~ 452 (601)
...+....++.+.+.++|+||||+|||+|+-++....-+ . +..++- ......|+ ..+..
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~--------~--------lg~~~~~v~~~~~g~--~~~s~ 114 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEG--------Y--------LGLLDMTVERNAYGR--QVDSF 114 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCC--------c--------cCcEEEEEEeeccCC--ccccE
Confidence 123566778888899999999999999999776211000 0 000000 00001111 11222
Q ss_pred eEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCC
Q 007496 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 532 (601)
Q Consensus 453 ~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p 532 (601)
.+.+... .+-.+.-..... | .+.+..+ +++++++|++++ . +++++.. + ++|+|||||++..
T Consensus 115 ~~~l~~~-----~~~~~~~~~~~~--h-----~~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~-~~gvQfHPE~~~~- 175 (184)
T TIGR03800 115 EAEVDIK-----GVGDDPITGVFI--R-----APKIVSV-GNGVEILAKVGN-R-IVAVRQG--N-ILVSSFHPELTDD- 175 (184)
T ss_pred EEEeecc-----cCCCCcceEEEE--c-----CCCcccC-CCCeEEEEEeCC-e-eEEEEeC--C-EEEEEeCCccCCC-
Confidence 2222110 000000011112 2 2556666 889999999655 3 6788643 3 6799999998743
Q ss_pred CCchHHHHHHH
Q 007496 533 GKPSPLFLGLI 543 (601)
Q Consensus 533 ~~p~pLF~~Fv 543 (601)
..+|+.|+
T Consensus 176 ---~~~~~~f~ 183 (184)
T TIGR03800 176 ---HRVHEYFL 183 (184)
T ss_pred ---chHHHHhh
Confidence 37888886
No 76
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.66 E-value=2.1e-15 Score=152.73 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=92.5
Q ss_pred ccCCCEEEECCCCCCCc--------h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCC
Q 007496 360 LKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKN 429 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg--------~--eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~ 429 (601)
+.++|||||+||+.... . ......++.+.++++|+||||+|+|+++.++|++|..-+ ..
T Consensus 43 ~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~---~~-------- 111 (235)
T PRK08250 43 ADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP---EK-------- 111 (235)
T ss_pred ccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCC---CC--------
Confidence 56899999999986521 1 234577888888999999999999999999999995311 01
Q ss_pred CeeeeCCCCCcccCCCceeeCceeEEEccCC---chhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCC
Q 007496 430 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKD---CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ 506 (601)
Q Consensus 430 pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~---s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~ 506 (601)
.+|.+++.+.+.. +++..+. ....+ .|.|+..+ .+ +.|++++|.++.+.
T Consensus 112 ------------------e~G~~~v~lt~~g~~d~l~~~~~-~~~~v--~~~H~d~~------~l-P~~a~~LA~s~~~~ 163 (235)
T PRK08250 112 ------------------EIGYFPITLTEAGLKDPLLSHFG-STLTV--GHWHNDMP------GL-TDQAKVLATSEGCP 163 (235)
T ss_pred ------------------ceeEEEEEEccccccCchhhcCC-CCcEE--EEEeccee------cC-CCCCEEEECCCCCC
Confidence 1234455554321 2333332 23334 45565432 23 78999999987776
Q ss_pred eEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHHH
Q 007496 507 RMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIA 544 (601)
Q Consensus 507 ~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~ 544 (601)
++++...++ ++|+|||||++. ..+..+++
T Consensus 164 -~qa~~~~~~--~~g~QfHPE~~~------~~~~~~~~ 192 (235)
T PRK08250 164 -RQIVQYSNL--VYGFQCHMEFTV------EAVELLIA 192 (235)
T ss_pred -ceEEEeCCC--EEEEeecCcCCH------HHHHHHHH
Confidence 899998654 679999999863 34455554
No 77
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.57 E-value=1.3e-14 Score=150.16 Aligned_cols=196 Identities=22% Similarity=0.297 Sum_probs=124.3
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECC-C-CCCC--
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR-- 375 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpG-G-fG~r-- 375 (601)
+-++ +|+.. +..|+..||+|.|+++.. +.+ | .++.++|-+++|| | ||..
T Consensus 4 v~~l-d~~ag--n~~si~nal~hlg~~i~~------v~~-----------P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGAG--NVRSIRNALRHLGFSIKD------VQT-----------P-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCCc--cHHHHHHHHHhcCceeee------ccC-----------c-------hhhccCceEeecCcccchHHHH
Confidence 4566 58754 788999999999998532 222 2 4577899999999 3 5542
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCC-CCcccCCCceeeCce
Q 007496 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSR 452 (601)
Q Consensus 376 --g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe-~~~~h~GgtmrLG~~ 452 (601)
...|+.+.++...++++||+|||+|+|+| |.+.|.. ..|...+ -.+.-+-.|-.+ ..++|.||+-
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaL---F~gSvE~---p~skGLg-vipg~v~RFD~s~k~VPhIGWNs----- 124 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQAL---FDGSVEN---PPSKGLG-VIPGIVGRFDASAKIVPHIGWNS----- 124 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHH---hcccccC---CCcCccc-ccccceecccCCCCcCCcccccc-----
Confidence 23678889999999999999999999998 3444421 1111111 012222223222 3478999953
Q ss_pred eEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCC
Q 007496 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 532 (601)
Q Consensus 453 ~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p 532 (601)
|.+-.+ +.+...-+.+ ..++.|+| +|++--..+++.+|++ ++...|. -+.|......++.++|||||.+...
T Consensus 125 -c~v~sd-~effg~~p~~---~~YFVHSy-l~~ek~~~len~~wki-at~kYG~-E~Fi~ai~knN~~AtQFHPEKSG~a 196 (541)
T KOG0623|consen 125 -CQVGSD-SEFFGDVPNR---HVYFVHSY-LNREKPKSLENKDWKI-ATCKYGS-ESFISAIRKNNVHATQFHPEKSGEA 196 (541)
T ss_pred -cccCCc-ccccccCCCc---eEEEEeee-cccccccCCCCCCceE-eeeccCc-HHHHHHHhcCceeeEecccccccch
Confidence 323233 3333332212 34677888 5555555677888876 4556664 2333333455577999999998775
Q ss_pred CCchHHHHHHHH
Q 007496 533 GKPSPLFLGLIA 544 (601)
Q Consensus 533 ~~p~pLF~~Fv~ 544 (601)
+....++|+.
T Consensus 197 --GL~vl~~FL~ 206 (541)
T KOG0623|consen 197 --GLSVLRRFLH 206 (541)
T ss_pred --hHHHHHHHHh
Confidence 5677888887
No 78
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.55 E-value=3.9e-14 Score=138.03 Aligned_cols=169 Identities=16% Similarity=0.259 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHH
Q 007496 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 386 (601)
Q Consensus 312 aY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r-----g~eg~i~aik~ 386 (601)
++.+-.++|+..|+++.. +... +.+.++|||++|||+... ........++.
T Consensus 9 ~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~ 64 (183)
T cd01749 9 DFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLRE 64 (183)
T ss_pred CcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHH
Confidence 555667999988876432 2221 347889999999986431 12345667888
Q ss_pred HHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCC-CCcccCCCceeeCceeEEEccCCchhhh
Q 007496 387 AREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAK 465 (601)
Q Consensus 387 are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe-~~~~h~GgtmrLG~~~v~l~~~~s~l~~ 465 (601)
+.+.++|+||||+|||+|+.+++.. + ....++ +++- ......|+. .|.....+... .
T Consensus 65 ~~~~g~PvlGiC~G~qlL~~~~~~~--~----~~~glG---------~~~~~v~~~~~g~~--~g~~~~~l~~~-----~ 122 (183)
T cd01749 65 FIRAGKPVFGTCAGLILLAKEVEDQ--G----GQPLLG---------LLDITVRRNAFGRQ--VDSFEADLDIP-----G 122 (183)
T ss_pred HHHcCCeEEEECHHHHHHHHHhccc--C----CCCccC---------ceeEEEEeeccccc--cceEEEcCCCC-----c
Confidence 8889999999999999999888753 0 000010 0000 000111211 11112211110 1
Q ss_pred ccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEcccCCCcCCCCCchHHHHHHH
Q 007496 466 LYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLI 543 (601)
Q Consensus 466 lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv 543 (601)
+-..... ..+.|. +.+..+ +++++++|.+++ . +++++.. + ++|+|||||++.. ..+|+.|+
T Consensus 123 ~~~~~~~--~~~~h~-----~~v~~~-p~~~~~la~~~~-~-~~a~~~~--~-~~g~qfHPE~~~~----~~~~~~f~ 183 (183)
T cd01749 123 LGLGPFP--AVFIRA-----PVIEEV-GPGVEVLAEYDG-K-IVAVRQG--N-VLATSFHPELTDD----TRIHEYFL 183 (183)
T ss_pred CCCCccE--EEEEEC-----cEEEEc-CCCcEEEEecCC-E-EEEEEEC--C-EEEEEcCCccCCC----cchhhhhC
Confidence 1001112 233343 333344 679999999754 3 5577643 3 7799999999854 26777664
No 79
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.42 E-value=3e-12 Score=124.68 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=60.2
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg- 376 (601)
+||+++. ++.+..+..++|++.|+++.+ +.. | +.++++|+|++|||++...
T Consensus 3 ~~igVLa----lqG~~~Eh~~al~~lG~~v~~------v~~-----------~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLA----IQGGYQKHADMFKSLGVEVKL------VKF-----------N-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEE----CCccHHHHHHHHHHcCCcEEE------ECC-----------H-------HHHhCCCEEEECCChHHHHH
Confidence 7899996 444777789999999876322 221 1 4578999999999976641
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 377 ----~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
..++.++++...+ ++|+||||+|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 2457788887765 6799999999999974
No 80
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.41 E-value=1.6e-11 Score=135.45 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=65.0
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r- 375 (601)
.++||++ +.-.+.-.|..-+++|+..|++ +.|++.-+ + +.+.++|+|++|||+...
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~------~~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAE------LVFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCE------EEEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 4799999 4545554677778999987765 34555311 0 235688999999997431
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 376 -----g~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
...++...++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124678889999999999999999999997554
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.36 E-value=3.5e-11 Score=123.88 Aligned_cols=212 Identities=20% Similarity=0.246 Sum_probs=125.5
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC--C
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 374 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG--~ 374 (601)
++||||+- +-... .-.+..++|+++|+.+. +.|+.. +.. .+ ..++++|+|+|||||+ +
T Consensus 3 ~~kvaVl~-~pG~n-~d~e~~~Al~~aG~~v~----~v~~~~--~~~-----~~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVLR-MEGTN-CEDETVKAFRRLGVEPE----YVHIND--LAA-----ER-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEEe-CCCCC-CHHHHHHHHHHCCCcEE----EEeecc--ccc-----cc-------cchhhCCEEEECCCCCccc
Confidence 47899994 53332 22477899999998753 334432 111 00 2468899999999974 3
Q ss_pred Cc---------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCC
Q 007496 375 RG---------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (601)
Q Consensus 375 rg---------~-eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~G 444 (601)
.- . ..+.++++.+.++++|+||||+|+|+|+- .| ++ +.. ++.. ..+-+.++....
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~-~G--lL--pg~--~~~~---~~~~~~L~~N~s----- 127 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE-LG--LL--PGF--DEIA---EKPEMALTVNES----- 127 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH-CC--CC--CCC--Cccc---cCCcceEeecCC-----
Confidence 21 1 11336788888999999999999999974 22 22 110 0000 011122332211
Q ss_pred CceeeCce--eEEEccCCchhhhccCCc-eeEeeeece-eee-eChhhHhhhccCCeEEEEE------------eCCCC-
Q 007496 445 GTMRLGSR--RTYFQIKDCKSAKLYGNR-TFIDERHRH-RYE-VNPDMIARLENAGLSFTGK------------DETSQ- 506 (601)
Q Consensus 445 gtmrLG~~--~v~l~~~~s~l~~lyg~~-~~I~erhrH-rYe-Vn~~~v~~le~~Gl~~~g~------------s~dg~- 506 (601)
+ |+=.+ .++.....|.+-+-+.+. -.+...|.- ||. .+++.+++|+..+..+.-+ |++|.
T Consensus 128 ~--~f~~~~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~ 205 (261)
T PRK01175 128 N--RFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSI 205 (261)
T ss_pred C--CeEEeeeEEEECCCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCCh
Confidence 1 11011 122222223333333222 233456643 566 5777788888888766655 45565
Q ss_pred -eEEEEEECCCCcEEEEcccCCCcCCCC------------CchHHHHHHHHHH
Q 007496 507 -RMEIVELPNHPYFIGVQFHPEYKSRPG------------KPSPLFLGLIAAA 546 (601)
Q Consensus 507 -~vE~IE~~~hpffvGVQFHPE~ss~p~------------~p~pLF~~Fv~aa 546 (601)
-|++|-.++.. ++|.-.|||....|. ++..+|+++++..
T Consensus 206 ~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 206 YNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 27777777776 569999999998887 7889999987644
No 82
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.35 E-value=2.6e-11 Score=126.99 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=120.0
Q ss_pred CceEEEEEcccCCC-cchHHHHHHHHHHccccceeEEEEEeecCCCcccccc-cCCchhhhHHHHhc--cCCCEEEECCC
Q 007496 296 EPVRIAMVGKYTGL-SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLL--KGADGILVPGG 371 (601)
Q Consensus 296 ~~v~IalVGkY~~l-~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~-~~~p~~y~~a~~~L--~~~DGIlvpGG 371 (601)
..++|+|+- --.. .+.-..+.+.|...... + ++.|+....-...+. .+-.++|..-++.+ .++||+||+|.
T Consensus 34 rpl~i~ilN-lMp~k~~TE~q~~rll~~~~~q--v--~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 34 RPLKILILN-LMPKKIETETQFLRLLGNTPLQ--V--DIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CCccEEEEe-CCCCCchHHHHHHHHhcCCCce--E--EEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 358999994 3222 23335667777443333 3 344544333222111 00111222223334 58999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCC
Q 007496 372 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (601)
Q Consensus 372 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~G 444 (601)
+-. +-++.+...++|++++.+|+||||+|+|+++.++++-. +.. ++
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~--------------------------~~ 161 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYT--------------------------LP 161 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCC--------------------------CC
Confidence 743 12456788899999999999999999999998888632 100 01
Q ss_pred CceeeCceeEEEc-cCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEc
Q 007496 445 GTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 523 (601)
Q Consensus 445 gtmrLG~~~v~l~-~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQ 523 (601)
.-.+|-++..+. +.+++++.+-. .. ..-|-|--+|+.+.+. .+.|++++|.|+... +.++..+++. ++++|
T Consensus 162 -~K~~Gv~~~~~~~~~~pL~~g~~d-~F--~~phSr~~~V~~~~i~--~~~~l~vLA~S~~~g-v~~~~~~~~r-~~~vQ 233 (302)
T PRK05368 162 -EKLSGVFEHRVLDPHHPLLRGFDD-SF--LVPHSRYTEVREEDIR--AATGLEILAESEEAG-VYLFASKDKR-EVFVT 233 (302)
T ss_pred -CceeEEEEEEEcCCCChhhcCCCC-cc--ccceeehhhccHHHhc--cCCCCEEEecCCCCC-eEEEEeCCCC-EEEEE
Confidence 011233333332 22244444321 22 2344444455544443 268999999987766 8888887766 56999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 007496 524 FHPEYKSRPGKPSPLFLGLIAAACG 548 (601)
Q Consensus 524 FHPE~ss~p~~p~pLF~~Fv~aa~~ 548 (601)
+||||... .|-..+.+...+
T Consensus 234 gHPEYd~~-----tL~~EY~RD~~~ 253 (302)
T PRK05368 234 GHPEYDAD-----TLAQEYFRDLGA 253 (302)
T ss_pred CCCCCCHH-----HHHHHHHHHHhC
Confidence 99999744 455555544443
No 83
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.33 E-value=1.9e-12 Score=138.30 Aligned_cols=149 Identities=21% Similarity=0.269 Sum_probs=100.2
Q ss_pred cCCCEEEECCCCCC------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeee
Q 007496 361 KGADGILVPGGFGN------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (601)
Q Consensus 361 ~~~DGIlvpGGfG~------rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~ 434 (601)
-++-||+++|||-+ |.++.. ..+-++|+||||.|||+|+-.+|+.|.+= ...|.
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~------if~~~vpvLGICYGmQ~i~~~~Gg~V~~~---~~RE~----------- 117 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPA------IFELGVPVLGICYGMQLINKLNGGTVVKG---MVRED----------- 117 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChh------HhccCCcceeehhHHHHHHHHhCCccccc---cccCC-----------
Confidence 48899999999865 222221 23457999999999999999999998530 11121
Q ss_pred CCCCCcccCCCceeeCceeEEEccCCchhhhccCCce-eEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEE
Q 007496 435 MPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 513 (601)
Q Consensus 435 mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~~~-~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~ 513 (601)
|...+.......++.++.+... .++..|- +.+.++ +.|+++.+++.+.. +.++..
T Consensus 118 ---------------G~~eI~v~~~~~lF~~~~~~~~~~VlltHg-------dsl~~v-~~g~kv~a~s~n~~-va~i~~ 173 (552)
T KOG1622|consen 118 ---------------GEDEIEVDDSVDLFSGLHKTEFMTVLLTHG-------DSLSKV-PEGFKVVAFSGNKP-VAGILN 173 (552)
T ss_pred ---------------CCceEEcCchhhhhhhhcccceeeeeeccc-------cchhhc-cccceeEEeecCcc-eeeehh
Confidence 1222332222234555543211 2555553 566666 78899999987764 788888
Q ss_pred CCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhc
Q 007496 514 PNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQ 555 (601)
Q Consensus 514 ~~hpffvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~ 555 (601)
...+. +|+|||||-...|. +..++.+|+-..+++...|..
T Consensus 174 e~kki-yglqfhpEV~~t~~-g~~ll~nFl~~vc~~~~n~tm 213 (552)
T KOG1622|consen 174 ELKKI-YGLQFHPEVTLTPN-GKELLKNFLFDVCGCSGNFTM 213 (552)
T ss_pred hhhhh-hcCCCCCcccccCc-hhHHHHHHHHHHcCCccCcch
Confidence 88885 49999999998885 678999999666555555543
No 84
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.31 E-value=3.7e-12 Score=124.40 Aligned_cols=137 Identities=23% Similarity=0.366 Sum_probs=91.3
Q ss_pred HhccCCCEEEECCC----CCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCee
Q 007496 358 KLLKGADGILVPGG----FGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (601)
Q Consensus 358 ~~L~~~DGIlvpGG----fG~rg-~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi 432 (601)
++|.++||++|+|. |++.. +-.+...++.....++|++|||+|||+++.+.|+.|-.
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr------------------ 116 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR------------------ 116 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc------------------
Confidence 56888999999996 44433 23455667777778999999999999999998888732
Q ss_pred eeCCCCCcccCCCceeeCceeEEEccCCchhhhccCC-ceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEE
Q 007496 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 511 (601)
Q Consensus 433 ~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~lyg~-~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~I 511 (601)
..+|-.|-+|+-.+ ...+..-.+.+|. ...+.-..-|+ +.+-.+ |.|.+++|.+++.+ +|++
T Consensus 117 --------a~KG~~~~lg~iti--vk~~~~~~~yFG~~~~~l~IikcHq-----Devle~-PE~a~llasSe~ce-ve~f 179 (245)
T KOG3179|consen 117 --------APKGPDLGLGSITI--VKDAEKPEKYFGEIPKSLNIIKCHQ-----DEVLEL-PEGAELLASSEKCE-VEMF 179 (245)
T ss_pred --------CCCCCcccccceEE--EEecccchhhcccchhhhhHHhhcc-----cceecC-Cchhhhhccccccc-eEEE
Confidence 11233333444332 2222334455541 11222233344 333234 78899999999988 9999
Q ss_pred EECCCCcEEEEcccCCCcCC
Q 007496 512 ELPNHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 512 E~~~hpffvGVQFHPE~ss~ 531 (601)
...+| +++.|-||||+..
T Consensus 180 s~~~~--~l~fQGHPEyn~e 197 (245)
T KOG3179|consen 180 SIEDH--LLCFQGHPEYNKE 197 (245)
T ss_pred Eecce--EEEecCCchhhHH
Confidence 99988 6799999999864
No 85
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=2.9e-11 Score=117.00 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=65.4
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHcc-ccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag-~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r- 375 (601)
+||++++ ++.+....+++|+.++ ++ +.|+... ++|+++||++||||-.+.
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e------~~~Vk~~------------------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAE------VVEVKRP------------------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCc------eEEEcCH------------------HHhccCcEEEecCccHHHH
Confidence 5788886 5668888899999996 43 3455432 678999999999987663
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 376 ----g~eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
...++.+.++...++++|+||.|.||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 13578889999999999999999999999754
No 86
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.29 E-value=3.2e-10 Score=113.21 Aligned_cols=196 Identities=23% Similarity=0.348 Sum_probs=123.8
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhcc-CCCEEEECCCC--C
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGF--G 373 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlvpGGf--G 373 (601)
.+||||+ .+-.. .+......|++++|.+.. ..|.... .+. ++|+|++|||| |
T Consensus 2 ~~kvaVi-~fpGt-N~d~d~~~A~~~aG~~~~----~V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGT-NCDYDMAAAFERAGFEAE----DVWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCc-CchHHHHHHHHHcCCCce----EEEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4799999 67533 356678889999999864 3565432 234 69999999997 4
Q ss_pred CC---c----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCc
Q 007496 374 NR---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (601)
Q Consensus 374 ~r---g----~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt 446 (601)
|. | .+..+..++.+.+.++|+||||-|+|+|+ +.+ + |+.+ |-.+..
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~-e~g--L--lPGa----l~~N~s------------------ 109 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS-EAG--L--LPGA----LTRNES------------------ 109 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH-HcC--c--CCcc----eecCCC------------------
Confidence 42 2 24456667777778999999999999998 533 1 1221 111111
Q ss_pred eeeCceeE--EEccCCchhhhccCCce--eEeeee-ceeeeeChhhHhhhccCCeEEEEE-----------eCCCCe--E
Q 007496 447 MRLGSRRT--YFQIKDCKSAKLYGNRT--FIDERH-RHRYEVNPDMIARLENAGLSFTGK-----------DETSQR--M 508 (601)
Q Consensus 447 mrLG~~~v--~l~~~~s~l~~lyg~~~--~I~erh-rHrYeVn~~~v~~le~~Gl~~~g~-----------s~dg~~--v 508 (601)
.|+=.+.+ ++..+.|.+.+.|.+.. .|...| --||.++.+.+++|+..|..+.-+ +++|.. |
T Consensus 110 ~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~I 189 (231)
T COG0047 110 LRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGI 189 (231)
T ss_pred CceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhc
Confidence 11112222 33344456655564322 344455 467888888888888777655543 345542 6
Q ss_pred EEEEECCCCcEEEEcccCCCcCCCCC----chHHHHHHHHH
Q 007496 509 EIVELPNHPYFIGVQFHPEYKSRPGK----PSPLFLGLIAA 545 (601)
Q Consensus 509 E~IE~~~hpffvGVQFHPE~ss~p~~----p~pLF~~Fv~a 545 (601)
.+|--++.. ++|..-|||..++... ...||++.++.
T Consensus 190 aGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 190 AGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 677666666 6799999999886544 35667666543
No 87
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.27 E-value=1.4e-10 Score=117.75 Aligned_cols=178 Identities=21% Similarity=0.252 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc---------hhH-HH
Q 007496 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 381 (601)
Q Consensus 312 aY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg---------~eg-~i 381 (601)
+-.++..+|+.+|+++. +.|+... ... ...++++|||+|||||.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~----~v~~~~~-~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAE----DVWHNDL-LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEE----EEeccCC-ccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 55688999999998753 3454321 110 02367899999999975311 111 56
Q ss_pred HHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccC
Q 007496 382 LAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (601)
Q Consensus 382 ~aik~are~~iP~LGICLGmQllaie--fgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~ 459 (601)
..++.+.+.++|+||||.|+|+|+-+ +.+.+.. ..+.++.-. ..+ +. ....+..+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~---~~~~~~~~~---------------~~~---~~--v~~~v~~~ 129 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIR---NKGLKFICR---------------WQN---RF--VTLRVENN 129 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccccc---CCCCceecc---------------ccC---ce--EEEEEcCC
Confidence 77888889999999999999999753 2222210 011111100 000 00 01111121
Q ss_pred Cc-hhhhc-cCCceeEeeeece-eeeeChhhHhhhccCCeEEEEE-------------eCCCCe--EEEEEECCCCcEEE
Q 007496 460 DC-KSAKL-YGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETSQR--MEIVELPNHPYFIG 521 (601)
Q Consensus 460 ~s-~l~~l-yg~~~~I~erhrH-rYeVn~~~v~~le~~Gl~~~g~-------------s~dg~~--vE~IE~~~hpffvG 521 (601)
.+ ++..+ -+....++..|.+ ||..+++.+.+++..+..+ -+ +++|.. |.+|-.++.. ++|
T Consensus 130 ~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlg 207 (238)
T cd01740 130 DSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLG 207 (238)
T ss_pred CCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEE
Confidence 12 22221 2234457788875 7888888787777766544 22 456652 7888878777 569
Q ss_pred EcccCCCcCCC
Q 007496 522 VQFHPEYKSRP 532 (601)
Q Consensus 522 VQFHPE~ss~p 532 (601)
...|||....|
T Consensus 208 lMphPer~~~~ 218 (238)
T cd01740 208 MMPHPERAVEP 218 (238)
T ss_pred EcCChHHcccc
Confidence 99999998877
No 88
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.27 E-value=4.3e-10 Score=124.06 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=64.1
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r- 375 (601)
+++||++ +.-.+.--|..-+++|+..|++ +.|+++.. + +.+.++|+|+||||+..-
T Consensus 244 ~~~Iava-~d~afnFy~~~~~~~L~~~g~~------~~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVA-QDQAFNFYYQDNLDALTHNAAE------LVPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEE-echhhceeHHHHHHHHHHCCCE------EEEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 4899999 3444443456778889987664 45665420 0 235689999999998532
Q ss_pred --c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 376 --G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 376 --g---~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
. ..++..+++.+.+++.|+||||-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 1 24577889999899999999999999998553
No 89
>PRK00784 cobyric acid synthase; Provisional
Probab=99.20 E-value=7.1e-10 Score=123.56 Aligned_cols=86 Identities=24% Similarity=0.360 Sum_probs=60.7
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHH-ccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~-ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~ 374 (601)
.+++||++ +|.... ++ .=+++|+. +|+++ .++++. +.+.++|||+||||+-.
T Consensus 250 ~~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v------~~~s~~------------------~~l~~~d~lilpGg~~~ 302 (488)
T PRK00784 250 GALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDV------RYVRPG------------------EPLPDADLVILPGSKNT 302 (488)
T ss_pred CceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeE------EEECCc------------------cccccCCEEEECCccch
Confidence 35899999 555322 33 44678887 88753 344432 23568999999999743
Q ss_pred Cc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 375 RG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 375 rg------~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
.. ..++...++.+.++++|+||||.|||+|+-.+
T Consensus 303 ~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 303 IADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 21 12467788888889999999999999998553
No 90
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.20 E-value=7.6e-10 Score=122.95 Aligned_cols=305 Identities=20% Similarity=0.268 Sum_probs=155.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCC---------Ccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldl---------g~y 74 (601)
||||| .=|++||=++++.|.+.|+.+|++|...|-= .|+= ..+|+.||+|.|-.. --+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 56775 5699999999999999999999999988832 1211 245666776654110 012
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 007496 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (601)
Q Consensus 75 erf~~~~l~~~~n-----~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~gg 149 (601)
++---+-|....+ +..|+.+.....++ |.... .+..-+.|++.+.+.+ .++|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111211101 11122111111111 11100 1234566777777775 368999999988
Q ss_pred ccccc----CcchHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcC-CCcccEEEEecCCCCCc
Q 007496 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (601)
Q Consensus 150 tvgdi----es~pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~-Gi~pd~iv~R~~~~l~~ 224 (601)
..-|+ +.....+-++.+.. .+++| +. +...+-. --+-+.++.++.. ++...++|+-...+-..
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV----~d-~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV----AD-IDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE----Ee-CCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77664 12223444444432 24444 11 1111010 1222333444443 35677888754433211
Q ss_pred hhhccc---cccCCCCCCCeeeeCCC-CCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhc-CCCCceE
Q 007496 225 NVKGKL---SQFCHVPEQNIITLYDV-PNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVR 299 (601)
Q Consensus 225 ~~r~Ki---slf~~v~~~~Vi~i~dv-dtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~-~~~~~v~ 299 (601)
..++.+ .-++.++ |+++.-- ++. +|- +++.++...+. .....++
T Consensus 201 ~~~~~~~~l~e~~gip---vLG~ip~~~~l--l~~--------------------------~e~~~~~~~~~~~~~~~~~ 249 (475)
T TIGR00313 201 VLKSGIEKLEELTGIP---VLGVLPYDENL--FPE--------------------------EDSLVIQERRSRGNAKSIR 249 (475)
T ss_pred HHHHHHHHHHHhhCCC---EEEEecCCCcC--CCh--------------------------HHhhhHHhhhccCCCCCcE
Confidence 112222 2222222 2222100 010 111 11112111211 1122389
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc---
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg--- 376 (601)
||++ +|.... ++. =+++|++. + .+.|++.. +.|.++|+|++|||+-...
T Consensus 250 Iav~-~~~~~~-nf~-~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~ 301 (475)
T TIGR00313 250 IGVV-RLPRIS-NFT-DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLY 301 (475)
T ss_pred EEEE-cCCccc-Ccc-ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHH
Confidence 9999 555433 222 46777776 2 24566543 2366899999999984321
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 377 ---~eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
..++..+++.+.+.+.|+||||.|||+|+-.
T Consensus 302 ~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 302 ALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1346788888888999999999999999754
No 91
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.18 E-value=2.8e-10 Score=110.97 Aligned_cols=160 Identities=18% Similarity=0.324 Sum_probs=94.2
Q ss_pred CcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHH
Q 007496 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILA 383 (601)
Q Consensus 309 l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r-----g~eg~i~a 383 (601)
++.++....++|+.+|.+. .+|... +.|.++||+++|||-.+. ...++...
T Consensus 4 LQG~~~EH~~~l~~lg~~~------~~Vr~~------------------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~ 59 (188)
T PF01174_consen 4 LQGAFREHIRMLERLGAEV------VEVRTP------------------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEP 59 (188)
T ss_dssp SSSSHHHHHHHHHHTTSEE------EEE-SG------------------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHH
T ss_pred cccChHHHHHHHHHcCCCe------EEeCCH------------------HHHccCCEEEECCCcHHHHHHHHHHcCCHHH
Confidence 4568888899999999875 223322 568899999999986542 13578888
Q ss_pred HHHHHHcC-CCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCch
Q 007496 384 AKYAREHR-IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCK 462 (601)
Q Consensus 384 ik~are~~-iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~ 462 (601)
++.+..++ +|+||+|.||-+|+ .++.+ .+...||.-++....+
T Consensus 60 l~~~~~~g~~Pv~GTCAGlIlLa----~~v~~-----------------------------~~q~~Lg~ldi~V~RN--- 103 (188)
T PF01174_consen 60 LREFIRSGSKPVWGTCAGLILLA----KEVEG-----------------------------QGQPLLGLLDITVRRN--- 103 (188)
T ss_dssp HHHHHHTT--EEEEETHHHHHHE----EEECS-----------------------------SCCTSS--EEEEEETT---
T ss_pred HHHHHHcCCCceeehhHHHHHhh----hhhhh-----------------------------cccccccceeEEEEcc---
Confidence 98888887 99999999999985 33421 0122234445544443
Q ss_pred hhhccCCceeEeeeeceeeeeC----------------hhhHhhhc-cCCeEEEEEeCCCCeEEEEEECCCCcEEEEccc
Q 007496 463 SAKLYGNRTFIDERHRHRYEVN----------------PDMIARLE-NAGLSFTGKDETSQRMEIVELPNHPYFIGVQFH 525 (601)
Q Consensus 463 l~~lyg~~~~I~erhrHrYeVn----------------~~~v~~le-~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQFH 525 (601)
.|| ||+.+|+.+ ..++.++. +.+..+++..+ |. +-+++ ...++++-||
T Consensus 104 ---afG-------rQ~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~-g~-iVav~---qgn~latsFH 168 (188)
T PF01174_consen 104 ---AFG-------RQLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELD-GK-IVAVR---QGNILATSFH 168 (188)
T ss_dssp ---TTC-------SSSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEET-TE-EEEEE---ETTEEEESS-
T ss_pred ---ccc-------cchhcEEEEEEeecCCCcEEEEEcCCcEEEEeecccccccccccc-cc-eEEEE---ecCEEEEEeC
Confidence 243 222222221 12222221 25677777654 43 44555 2347899999
Q ss_pred CCCcCC-CCCchHHHHHHHHHHh
Q 007496 526 PEYKSR-PGKPSPLFLGLIAAAC 547 (601)
Q Consensus 526 PE~ss~-p~~p~pLF~~Fv~aa~ 547 (601)
||.+.. . .+.+.|++.+.
T Consensus 169 PELT~D~~----r~H~yFl~~v~ 187 (188)
T PF01174_consen 169 PELTDDDT----RIHEYFLEMVV 187 (188)
T ss_dssp GGGSSTHC----HHHHHHHHHHC
T ss_pred CcccCchh----HHHHHHHHHhh
Confidence 999876 4 67777777653
No 92
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.04 E-value=3.6e-10 Score=113.12 Aligned_cols=182 Identities=19% Similarity=0.266 Sum_probs=105.7
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhH--HHHHHHHHHHc--
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG--KILAAKYAREH-- 390 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg--~i~aik~are~-- 390 (601)
|.++.++.+|+++ +.+.+-.+|++ ..+.|+-.+||++|||--.++.-. .-.....+.|.
T Consensus 81 SYVK~aEsgGARV---iPli~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nD 143 (340)
T KOG1559|consen 81 SYVKLAESGGARV---IPLIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERND 143 (340)
T ss_pred HHHHHHHcCCceE---EEEecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccC
Confidence 8899999999985 23344333321 235678899999999966666422 12223344443
Q ss_pred ---CCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCceeeCceeEEEccCCchhhhcc
Q 007496 391 ---RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLY 467 (601)
Q Consensus 391 ---~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~s~l~~ly 467 (601)
..|++|||||+.+|.+-...+-.-+. .||...-..-..|. ...+.-+||-- +.| + .++.++-
T Consensus 144 aGehFPvyg~CLGFE~lsmiISqnrdile-----~~d~vd~AssLqF~---~nvn~~~t~FQ-rFP----p--ELLkkL~ 208 (340)
T KOG1559|consen 144 AGEHFPVYGICLGFELLSMIISQNRDILE-----RFDAVDVASSLQFV---GNVNIHGTMFQ-RFP----P--ELLKKLS 208 (340)
T ss_pred CccccchhhhhhhHHHHHHHHhcChhHHH-----hhcccccccceeee---cccceeehhHh-hCC----H--HHHHHhc
Confidence 38999999999999877653322121 12111000000000 11222234311 111 1 3455554
Q ss_pred CCceeEeeeeceeeeeChhhHh---hhccCCeEEEEEeCCCC---eEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 468 GNRTFIDERHRHRYEVNPDMIA---RLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 468 g~~~~I~erhrHrYeVn~~~v~---~le~~Gl~~~g~s~dg~---~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
. .+ -..++|+|.+.|+... .| ..-+.++-++.|++ .|..+|.+.+|. .|+|||||+.+-.+
T Consensus 209 ~-dc--Lvmq~Hk~gisp~nF~~N~~L-s~FFnilTT~~D~~~k~fvSTv~~~kYPv-tgfQWHPEKnafEW 275 (340)
T KOG1559|consen 209 T-DC--LVMQNHKFGISPKNFQGNPAL-SSFFNILTTCTDGNSKTFVSTVESKKYPV-TGFQWHPEKNAFEW 275 (340)
T ss_pred c-ch--heeeccccccchhhccCCHHH-HHHHhheeeecCCCceEEEEeecceeccc-eeeeecCccCcccc
Confidence 2 22 2468899999886542 22 23366777776663 578889999995 59999999987554
No 93
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.00 E-value=2.6e-08 Score=109.44 Aligned_cols=290 Identities=18% Similarity=0.264 Sum_probs=154.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEecCCccccCCCCccccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp-yln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~ 79 (601)
|+=|||||- =||.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|. |-.+
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~-------------------~~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHE-------------------AVAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHH-------------------HHhC
Confidence 666788865 6999999999999999999999999999877 53 43 2333 2222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc
Q 007496 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM 157 (601)
Q Consensus 80 ~~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit--~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~ 157 (601)
... .| +=||.. +.|++...+ ...|++|||==|=+-|=+..
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 221 01 113332 223333321 13799999953333453323
Q ss_pred hHHHHHHHHhhHcCCCCEEEEeeeeeeeecC-CCccccCCccchhhhhhc---CCCcccEEEEecCCCC--Cc----hhh
Q 007496 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--DD----NVK 227 (601)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~-~~e~ktkptq~sv~~Lrs---~Gi~pd~iv~R~~~~l--~~----~~r 227 (601)
-..+-++++..- ++ -+..+ .|-.---+|=.++.++.. .++...++|+-...+- .. ...
T Consensus 96 s~adla~~l~~P-----vi-------LVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VV-------LVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EE-------EEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 344555554332 11 12221 121111122223344433 4899999999655431 11 111
Q ss_pred ccccccCCCCCCCeeeeCCCCCcccccHHHHhc-c----hhhhhhhhcCCCCCCCchhhHHHHHHHHHhc----------
Q 007496 228 GKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQ-K----AHEAIFKVLNLQGTTKEPLLKEWTSRAEICD---------- 292 (601)
Q Consensus 228 ~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~q-g----~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~---------- 292 (601)
+.+..+..++...-+.+ ++| ++-|..-.+ . ..+.+-+.++++ .+.+-..
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~------------~l~~~a~~~~~~~~~~~ 227 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE------------RLAAVAREPPRPEPPEE 227 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH------------HHHHHhhCCCCcccccc
Confidence 12334444544333322 444 443321111 0 001111222221 1111100
Q ss_pred -CCCCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCC
Q 007496 293 -GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (601)
Q Consensus 293 -~~~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGG 371 (601)
.....++||+.-|- .+.=-|..-+++|+.+ +++ ..+++ +.+ +.+.++|+|++|||
T Consensus 228 ~~~~~~~~iavA~D~-AF~FyY~enl~~L~~~-ael------v~fSP--l~~--------------~~lp~~D~l~lpGG 283 (433)
T PRK13896 228 APATGDPTVAVARDA-AFCFRYPATIERLRER-ADV------VTFSP--VAG--------------DPLPDCDGVYLPGG 283 (433)
T ss_pred ccCCCCCeEEEEEcC-ccceeCHHHHHHHHhc-CcE------EEEcC--CCC--------------CCCCCCCEEEeCCC
Confidence 11223799998433 2333567778899988 653 22332 111 23568999999999
Q ss_pred CCCCch-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 372 FGNRGV-----QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 372 fG~rg~-----eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
+-.-.. .+..+.++.+.+++.|++|||-|||+|+-.
T Consensus 284 ~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 284 YPELHADALADSPALDELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred chhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 854211 224478888888999999999999999743
No 94
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.69 E-value=3.4e-07 Score=94.49 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=103.6
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC--C
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~--r 375 (601)
+|++|+ .+-. ...-.....||+.+|+++.. .|+. ++.... ..|+++|+|++||||+. .
T Consensus 2 pkV~Vl-~~pG-tNce~e~~~A~~~aG~~~~~----v~~~--dl~~~~------------~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVL-RFPG-TNCERETAAAFENAGFEPEI----VHIN--DLLSGE------------SDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEE-E-TT-EEEHHHHHHHHHCTT-EEEE----EECC--HHHTTS--------------GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEE-ECCC-CCCHHHHHHHHHHcCCCceE----EEEE--eccccc------------CchhhCcEEEECCccCcccc
Confidence 578888 3432 23566889999999998643 3332 221100 35889999999999754 2
Q ss_pred c-----h-------hHHHHHHHHHHHc-CCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCccc
Q 007496 376 G-----V-------QGKILAAKYAREH-RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 442 (601)
Q Consensus 376 g-----~-------eg~i~aik~are~-~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h 442 (601)
- + ...+.+++...+. +.|+||||-|+|+|+ ++| ++ +.- ........+.+++...
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~-~~G--ll--p~~-----~~~~~~~~~~L~~N~s--- 128 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV-ELG--LL--PGG-----EIKDSEQSPALTPNAS--- 128 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC-CCC--CS--TT-----------TT--EEE--TT---
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH-HhC--cC--CCc-----cccccCCCcEEcCCCC---
Confidence 1 1 1235677777777 999999999999995 433 22 110 0000122233333211
Q ss_pred CCCceeeCceeEEE--ccCC-ch-hhhccCCceeEeeeece-eeee-ChhhHhhhccCCeEEEEEe-------------C
Q 007496 443 MGGTMRLGSRRTYF--QIKD-CK-SAKLYGNRTFIDERHRH-RYEV-NPDMIARLENAGLSFTGKD-------------E 503 (601)
Q Consensus 443 ~GgtmrLG~~~v~l--~~~~-s~-l~~lyg~~~~I~erhrH-rYeV-n~~~v~~le~~Gl~~~g~s-------------~ 503 (601)
+.. =.+-+.+ .+.+ +. ++.+ ....+..+|.+ ||.+ +++..++|++.|....-+. +
T Consensus 129 --~~f--e~rwv~~~v~~~s~~~~~~~~--~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 129 --GRF--ESRWVNLVVNENSPSIFLRGL--EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp --SS---EEEEEEEEE--SSTTCCCTTT--TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred --CCe--EEEEEEEEEecCCcceecCCC--CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 111 0111222 1221 11 1222 12344456644 6777 6778888988887766653 3
Q ss_pred CCC--eEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 504 TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 504 dg~--~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
+|. -|++|-.++.. ++|.-.|||....+.
T Consensus 203 NGS~~~IAGics~~Gr-vlglMpHPEr~~~~~ 233 (259)
T PF13507_consen 203 NGSVNNIAGICSPDGR-VLGLMPHPERAFEPW 233 (259)
T ss_dssp S--GGGEEEEE-TTSS-EEEESSBCCGTTCCC
T ss_pred CCCccceeEEEcCCCC-EEEEcCChHHhCchh
Confidence 342 38888888877 569999999988775
No 95
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.63 E-value=3e-06 Score=102.78 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=124.5
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC--
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG-- 373 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG-- 373 (601)
.++|++|+ .+-.. ..-.....|++.+|+++. ..|+. +|....+.++ .......|+++|+|++||||+
T Consensus 976 ~kpkvaIl-~~pGt-Nce~d~a~Af~~aG~~~~----~v~~~--dl~~~~i~~s---~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIP-VFPGT-NSEYDSAKAFEKEGAEVN----LVIFR--NLNEEALVES---VETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEE-ECCCC-CCHHHHHHHHHHcCCceE----EEEEe--cCcccccccc---hhhhhcccccCcEEEEcCccCcc
Confidence 35899999 45322 256678899999998843 23432 1211111111 111123578999999999984
Q ss_pred CC--ch----------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCC-CCCCeeeeCCCCCc
Q 007496 374 NR--GV----------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-TKNPCVIFMPEGSK 440 (601)
Q Consensus 374 ~r--g~----------eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~-~~~pvi~~mpe~~~ 440 (601)
|. +- ....++++...+.+.|+||||.|||+|+ ++| ++ +. .++.+. ...| .++.....
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~-~lG--Ll--P~---~~~~~~~~~~p--~l~~N~s~ 1114 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV-KSG--LL--PY---GNIEAANETSP--TLTYNDIN 1114 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH-HcC--CC--cC---ccccccccCCc--eeeecCCC
Confidence 32 11 2345666666678999999999999996 433 11 10 011110 1111 22221110
Q ss_pred ccCCCceeeCceeEEEccCCchhhhcc--CCceeEeeeec-eeeeeChhhHhhhccCCeEEEEE-------------eCC
Q 007496 441 THMGGTMRLGSRRTYFQIKDCKSAKLY--GNRTFIDERHR-HRYEVNPDMIARLENAGLSFTGK-------------DET 504 (601)
Q Consensus 441 ~h~GgtmrLG~~~v~l~~~~s~l~~ly--g~~~~I~erhr-HrYeVn~~~v~~le~~Gl~~~g~-------------s~d 504 (601)
.|.- -.-.+++..+.|.+-+-+ |....|...|- -||.++++.+++|+.+|...+-+ |++
T Consensus 1115 rf~~-----r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPN 1189 (1239)
T TIGR01857 1115 RHVS-----KIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPN 1189 (1239)
T ss_pred CeEE-----eeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCC
Confidence 1110 011122333223333322 22345666774 37888877788888888665544 455
Q ss_pred CC--eEEEEEECCCCcEEEEcccCCCcCCCCC-------chHHHHHHHH
Q 007496 505 SQ--RMEIVELPNHPYFIGVQFHPEYKSRPGK-------PSPLFLGLIA 544 (601)
Q Consensus 505 g~--~vE~IE~~~hpffvGVQFHPE~ss~p~~-------p~pLF~~Fv~ 544 (601)
|. -+++|-.++.. ++|..-|||....+.- ...+|.+.++
T Consensus 1190 GS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1190 GSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 65 26777777777 5699999999866532 3567777663
No 96
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=98.62 E-value=3.4e-09 Score=98.15 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=52.7
Q ss_pred EeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHH
Q 007496 178 IHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLL 257 (601)
Q Consensus 178 ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L 257 (601)
|-+---|.|..-|=-+ .++||.++++.++|||+.++.+++|+++.+|..|++.++|+++.+|||| +|+++|
T Consensus 50 IlvfTyP~IGNyGv~~--------~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~l 120 (131)
T PF00988_consen 50 ILVFTYPLIGNYGVNE--------EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKL 120 (131)
T ss_dssp EEEESSSB--TT-B-G--------GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHH
T ss_pred EEEEeccCCeEEcCCc--------ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHH
Confidence 3333445565444322 4589999999999999999999999999999999999999999999999 999999
Q ss_pred Hhcchhhhhh
Q 007496 258 RDQKAHEAIF 267 (601)
Q Consensus 258 ~~qg~~~~i~ 267 (601)
|++|.|++++
T Consensus 121 R~~G~m~g~I 130 (131)
T PF00988_consen 121 REKGSMKGVI 130 (131)
T ss_dssp HHH--EEEEE
T ss_pred HhcCCceEEE
Confidence 9999998865
No 97
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.61 E-value=9.3e-08 Score=94.24 Aligned_cols=83 Identities=28% Similarity=0.360 Sum_probs=60.8
Q ss_pred EEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc---
Q 007496 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (601)
Q Consensus 300 IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg--- 376 (601)
|+|+ +|.... ++.|+.++++..|+++. +++.. +.+.++|+|+||||+....
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~------~~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVR------YVEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEE------EEeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4666 687554 88999999999987643 33322 1256789999999974321
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 377 ---~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
..++...++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 12466778888889999999999999997553
No 98
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.51 E-value=2.4e-06 Score=104.96 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=115.4
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC-
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN- 374 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~- 374 (601)
.++|++|+ .+-.. ..-.....||+.+|+++.. .|+. +|.... ..|.+++||++||||+.
T Consensus 1034 ~~pkv~il-~~pG~-N~~~e~~~Af~~aG~~~~~----v~~~--dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAIL-REQGV-NSHVEMAAAFDRAGFDAID----VHMS--DLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEE-ECCCC-CCHHHHHHHHHHcCCCeEE----EEee--cCcCCC------------CChhhCcEEEECCccCCc
Confidence 35789998 45322 2566889999999998632 3332 332211 24789999999999744
Q ss_pred -C-ch-----------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCc
Q 007496 375 -R-GV-----------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 440 (601)
Q Consensus 375 -r-g~-----------eg~i~aik~ar-e~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~ 440 (601)
. +. ....++++... +.+.++||||.|+|+|+ +++ .+. +.+ | ..| .+.....
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~-~lg-~l~--p~~---~-----~~p--~l~~N~s- 1158 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS-NLK-EII--PGA---E-----HWP--RFVRNRS- 1158 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH-HhC-Ccc--CCC---C-----CCC--eEeecCC-
Confidence 2 11 12334455533 56899999999999996 444 221 111 1 011 1211100
Q ss_pred ccCCCceeeCceeEEEccCCc-hhhhccCCceeEeeeece-eeeeChhhHhhhccCCeEEEEE-------------eCCC
Q 007496 441 THMGGTMRLGSRRTYFQIKDC-KSAKLYGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETS 505 (601)
Q Consensus 441 ~h~GgtmrLG~~~v~l~~~~s-~l~~lyg~~~~I~erhrH-rYeVn~~~v~~le~~Gl~~~g~-------------s~dg 505 (601)
+...--.-.+++.++.| .++.+-|..-.++..|.+ ||.++++.+.+|+..|...+-+ |++|
T Consensus 1159 ----~rfesr~~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNG 1234 (1290)
T PRK05297 1159 ----EQFEARFSLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNG 1234 (1290)
T ss_pred ----CCeEEeeeEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCC
Confidence 10000001122322223 344443433457788876 6777777777887777665544 4566
Q ss_pred C--eEEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 506 Q--RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 506 ~--~vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
. -+++|-.++.. ++|...|||....|.
T Consensus 1235 S~~~IaGi~s~dGr-vlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1235 SPNGITGLTTADGR-VTIMMPHPERVFRTV 1263 (1290)
T ss_pred ChhcceEeECCCCC-EEEEcCChHHhcchh
Confidence 5 27888888877 559999999887764
No 99
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.51 E-value=1.4e-06 Score=83.58 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=63.5
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccc--eeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~--~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r 375 (601)
.-|+++. ++.++...+..++++.++. .+++++.-+... +++.++||++||||....
T Consensus 12 ~VIGVLA----LQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~------------------~D~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 12 VVIGVLA----LQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTK------------------NDLAQCDALIIPGGESTA 69 (226)
T ss_pred eEEeeee----hhhHHHHHHHHHHHhhccCcceEEEEEEeecCH------------------HHHhhCCEEEecCCchhH
Confidence 3466663 7779998888888877776 566666655543 678999999999986653
Q ss_pred -----chhHHHHHHHHHHHcC-CCEEEEehhHHHHHHH
Q 007496 376 -----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIE 407 (601)
Q Consensus 376 -----g~eg~i~aik~are~~-iP~LGICLGmQllaie 407 (601)
...+....+.....+. +|+||.|.||.+++-.
T Consensus 70 mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 1234445555555555 9999999999999744
No 100
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.47 E-value=2.8e-07 Score=102.52 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=54.1
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC-Cc
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 376 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~-rg 376 (601)
|||+++ +..|+.++|++.+.. .+.+.|++.. +.|.++|+||+|||.-. .+
T Consensus 1 m~iGvl--------al~sv~~al~~lg~~---~~~vv~~~~~------------------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGNL---PTKIIDENNI------------------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcCC---CcEEEEeCCh------------------HHhccCCEEEECCCchhhcc
Confidence 478988 456888999998862 1234565532 45789999999998522 22
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 377 --VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 377 --~eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
.+++..+++ +.++|+||||.|||||+-.
T Consensus 52 ~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 134444443 3389999999999999743
No 101
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.39 E-value=9e-06 Score=99.41 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=114.8
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCC--C
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF--G 373 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGf--G 373 (601)
.++||+|+ .+-.. ..-.....||+.+|+++. ..|+. +|.+.. ..|.+++||++|||| |
T Consensus 1036 ~~pkVaVl-~~pGt-N~~~e~~~Af~~aGf~~~----~V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAII-REEGS-NGDREMAAAFYAAGFEPW----DVTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEE-ECCCC-CCHHHHHHHHHHcCCceE----EEEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 46899999 45322 255678999999999862 23433 332211 347899999999998 5
Q ss_pred CCch------------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCCCCcc---CCCCCCCeeeeCCC
Q 007496 374 NRGV------------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEF---DPNTKNPCVIFMPE 437 (601)
Q Consensus 374 ~rg~------------eg~i~aik~ar-e~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef---~~~~~~pvi~~mpe 437 (601)
|.-. +...++++... +.+.++||||.|+|+|+ +++ ++ +.+..... ..+...| .++..
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~-~lg--ll--Pg~~~~~~~~~~~~e~~p--~l~~N 1168 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA-LLG--WV--PGPQVGGGLGAGGDPSQP--RFVHN 1168 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH-HcC--CC--CCCccccccccccccCCc--eeeec
Confidence 5311 22344555555 45899999999999996 432 22 22110000 0001111 11111
Q ss_pred CCcccCCCceeeCceeEEEccCCc-hhhhccCCceeEeeeecee-eeeC-hhhHhhhccCCeEEEEE-------------
Q 007496 438 GSKTHMGGTMRLGSRRTYFQIKDC-KSAKLYGNRTFIDERHRHR-YEVN-PDMIARLENAGLSFTGK------------- 501 (601)
Q Consensus 438 ~~~~h~GgtmrLG~~~v~l~~~~s-~l~~lyg~~~~I~erhrHr-YeVn-~~~v~~le~~Gl~~~g~------------- 501 (601)
.-+...--.-.+++.+..| .++.+-|..-.++..|.|+ |.+. ++.+.+|+..|...+-+
T Consensus 1169 -----~s~rfesr~v~v~V~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~ 1243 (1307)
T PLN03206 1169 -----ESGRFECRFTSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPF 1243 (1307)
T ss_pred -----CCCCeEEeceEEEECCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCC
Confidence 0010000011123323223 3333433334577888774 3433 55667777777655544
Q ss_pred eCCCCe--EEEEEECCCCcEEEEcccCCCcCCCC
Q 007496 502 DETSQR--MEIVELPNHPYFIGVQFHPEYKSRPG 533 (601)
Q Consensus 502 s~dg~~--vE~IE~~~hpffvGVQFHPE~ss~p~ 533 (601)
|++|.. |++|-.++.. ++|...|||....|.
T Consensus 1244 NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1244 NPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCChhhceeeECCCCC-EEEEcCCHHHhhhhh
Confidence 456653 7888888877 459999999887664
No 102
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.39 E-value=7.8e-07 Score=88.03 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC---c---hhHHHHHHH
Q 007496 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G---VQGKILAAK 385 (601)
Q Consensus 312 aY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r---g---~eg~i~aik 385 (601)
-|..-+++|+.+|+++ .+++... + +.+.++|+|+||||+... . ..++.++++
T Consensus 12 ~y~e~~~~l~~~G~~v------~~~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAEL------VPFSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEE------EEECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 5678889999998754 3343310 0 234569999999986441 1 235778899
Q ss_pred HHHHcCCCEEEEehhHHHHHHHh
Q 007496 386 YAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 386 ~are~~iP~LGICLGmQllaief 408 (601)
.+.++++|++|||.|||+|+-.+
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHHh
Confidence 88889999999999999998553
No 103
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.34 E-value=5.5e-06 Score=101.66 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=108.2
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r 375 (601)
.++|+||+ .+-.. ..-.....||+.+|+++. ..|+. +|.... ..|.+++||++||||..-
T Consensus 1054 ~~p~vail-~~pG~-N~~~e~~~Af~~aGf~~~----~v~~~--dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAIL-REQGV-NGDREMAAAFDRAGFEAW----DVHMS--DLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEE-ECCCC-CCHHHHHHHHHHhCCCcE----EEEEe--ccccCC------------cchhheeEEEEcCCCCCc
Confidence 45799999 45322 255678899999999853 23432 232211 237789999999997442
Q ss_pred c-------h-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCc
Q 007496 376 G-------V-------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 440 (601)
Q Consensus 376 g-------~-------eg~i~aik~ar-e~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~ 440 (601)
. + ....++++... +.+.++||||.|+|+|+-+.+ ++ +.+ +. .|. +++..
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g--ll--p~~---~~-----~p~--l~~N~-- 1177 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE--WI--PGT---EN-----WPH--FVRNN-- 1177 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC--cC--CCC---CC-----Cce--eeecC--
Confidence 1 1 12344555554 568999999999999973322 21 111 10 111 11110
Q ss_pred ccCCCceeeCceeEEEccCCc-hhhhccCCceeEeeeece-eee-eChhhHhhhccCCeEEEEE-------------eCC
Q 007496 441 THMGGTMRLGSRRTYFQIKDC-KSAKLYGNRTFIDERHRH-RYE-VNPDMIARLENAGLSFTGK-------------DET 504 (601)
Q Consensus 441 ~h~GgtmrLG~~~v~l~~~~s-~l~~lyg~~~~I~erhrH-rYe-Vn~~~v~~le~~Gl~~~g~-------------s~d 504 (601)
-+...--.-.+++.++.| .++.+-|..-.++..|.+ ||. .+++...+++..|...+-+ |++
T Consensus 1178 ---s~~fe~r~~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPN 1254 (1310)
T TIGR01735 1178 ---SERFEARVASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPN 1254 (1310)
T ss_pred ---CCCeEEeeeEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCC
Confidence 000000011122322223 333333333456677765 433 3555666776777554443 456
Q ss_pred CCe--EEEEEECCCCcEEEEcccCCCcCCC
Q 007496 505 SQR--MEIVELPNHPYFIGVQFHPEYKSRP 532 (601)
Q Consensus 505 g~~--vE~IE~~~hpffvGVQFHPE~ss~p 532 (601)
|.. |++|-.++.. ++|...|||....+
T Consensus 1255 GS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1255 GSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred CChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 653 7777777766 45888888876655
No 104
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.22 E-value=0.00035 Score=76.45 Aligned_cols=195 Identities=22% Similarity=0.219 Sum_probs=109.4
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhcc-CCCEEEECCCCCCC-
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 375 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlvpGGfG~r- 375 (601)
+|||+.-|- .+.=-|..-++.|+.+|+++. ++++ |.+ +.+. ++|+|.|||||-.-
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv------~FSP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLREAGAELV------FFSP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHHCCCEEE------EeCC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 789998433 233367788999999999852 2332 111 2354 69999999987552
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCCc-eee
Q 007496 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT-MRL 449 (601)
Q Consensus 376 -----g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt-mrL 449 (601)
..+.+.++++.+.+.++|++|=|-|+--|+-. |.+++- ..++-+-++|- ...|+.. +.|
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~-------le~~~G------~~~~M~Gvlp~--~~~m~~Rl~~l 367 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES-------LEDADG------DTYEMVGVLPG--STRMTKRLQAL 367 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh-------eeccCC------ceeeeeeeecc--chhhhhhhhcc
Confidence 34568889999999999999999999888633 222211 11223333332 1234444 356
Q ss_pred CceeEEEccCCchhhhccCCceeEeeeeceeeeeChhhHhhhccCCeEEEEEeCCCCe--EEEEEECCCCcEEEEcccCC
Q 007496 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR--MEIVELPNHPYFIGVQFHPE 527 (601)
Q Consensus 450 G~~~v~l~~~~s~l~~lyg~~~~I~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~--vE~IE~~~hpffvGVQFHPE 527 (601)
|=+......++.+... |.+..=.|.|+-+....++ . ..-+--..-+|.. -+++.. .+.+|.=.|=-
T Consensus 368 GY~~~~~~~d~~~~~~--G~~irGHEFHyS~~~~~~~-~------~~a~~~~~g~g~~~~~~G~~~---gnv~asY~H~H 435 (451)
T COG1797 368 GYREAEAVDDTLLLRA--GEKIRGHEFHYSRLITEED-A------EPAFRVRRGDGIDNGRDGYRS---GNVLASYLHLH 435 (451)
T ss_pred ceeEEEecCCcccccC--CceeeeeeeeeeecccCCc-C------ceeeeeecccCccccccceee---CCeEEEEEeee
Confidence 6666666665332222 1111224666443323222 0 1111111111110 123322 24678888887
Q ss_pred CcCCCCCchHHHHHHHHHH
Q 007496 528 YKSRPGKPSPLFLGLIAAA 546 (601)
Q Consensus 528 ~ss~p~~p~pLF~~Fv~aa 546 (601)
+.|.| ..+.+|+++|
T Consensus 436 ~~s~~----~~~~~~v~~~ 450 (451)
T COG1797 436 FASNP----AFAARFVAAA 450 (451)
T ss_pred cccCH----HHHHHHHHhh
Confidence 77776 5778888876
No 105
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.08 E-value=7.7e-05 Score=78.31 Aligned_cols=209 Identities=17% Similarity=0.239 Sum_probs=105.6
Q ss_pred CceEEEEEcccCCCc-chHHHHHHHHHHccccceeEEEEEeecCCCcccccc-cCCchhhhHHHHhc--cCCCEEEECCC
Q 007496 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLL--KGADGILVPGG 371 (601)
Q Consensus 296 ~~v~IalVGkY~~l~-DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~-~~~p~~y~~a~~~L--~~~DGIlvpGG 371 (601)
..++|+|+ +--..+ +.-..+.+.|...... +++.|+-...-...+. .+-.++|..-++.+ ..+||+||+|.
T Consensus 33 rpL~I~Il-NLMP~K~~TE~Q~lrlL~~tplq----v~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGIL-NLMPDKEETERQFLRLLSNTPLQ----VEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-----EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEE-ecccchHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 46899999 333221 2223445555445443 3445554332221111 00111222334444 48999999998
Q ss_pred CCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH-hccccccccCCCCCccCCCCCCCeeeeCCCCCcccC
Q 007496 372 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 443 (601)
Q Consensus 372 fG~r-------g~eg~i~aik~are~~iP~LGICLGmQllaie-fgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~ 443 (601)
|=.. -++...+.+.|++++..+.|.||.|.|.+... +|-+-..+
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l---------------------------- 159 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPL---------------------------- 159 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEE----------------------------
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccC----------------------------
Confidence 7442 25678889999999999999999999996433 23211111
Q ss_pred CCceeeCceeEEE-ccCCchhhhccCCceeEeeeeceee-eeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEE
Q 007496 444 GGTMRLGSRRTYF-QIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 521 (601)
Q Consensus 444 GgtmrLG~~~v~l-~~~~s~l~~lyg~~~~I~erhrHrY-eVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvG 521 (601)
..-.+|-++..+ .+.+++++++-. . ...-| -|| +++.+.+. +..+|++++.+++.. +-++..+++. .+=
T Consensus 160 -~~KlfGVf~~~~~~~~~pLl~Gfdd-~--f~~Ph-SR~t~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r-~vf 230 (298)
T PF04204_consen 160 -PEKLFGVFEHRVLDPDHPLLRGFDD-T--FFAPH-SRYTEIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGR-QVF 230 (298)
T ss_dssp -EEEEEEEEEEEES-SS-GGGTT--S-E--EEEEE-EEEEE--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCT-EEE
T ss_pred -CCcceeceeeeccCCCChhhcCCCc-c--ccCCc-ccccCCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCC-EEE
Confidence 012345666663 334467776632 2 22233 222 44444442 368999999988765 7788888876 447
Q ss_pred EcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 007496 522 VQFHPEYKSRPGKPSPLFLGLIAAACGQLD 551 (601)
Q Consensus 522 VQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 551 (601)
+|.|||+... -|-+.+.+...+.++
T Consensus 231 i~GH~EYd~~-----TL~~EY~RD~~~gl~ 255 (298)
T PF04204_consen 231 ITGHPEYDAD-----TLAKEYRRDLAKGLD 255 (298)
T ss_dssp E-S-TT--TT-----HHHHHHHHHHHCT--
T ss_pred EeCCCccChh-----HHHHHHHHHHhCCCC
Confidence 9999999754 566777766666553
No 106
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.83 E-value=9.3e-05 Score=61.98 Aligned_cols=76 Identities=28% Similarity=0.354 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch----hHHHHHHHHH
Q 007496 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYA 387 (601)
Q Consensus 312 aY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~----eg~i~aik~a 387 (601)
.+.+..++|+.+++.+. .+......... .....++|+|++|||+..+.. ..+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVD------VVSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEE------EEcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 45678889998885432 23332211000 023578999999999877542 5678888888
Q ss_pred HHcCCCEEEEehhHHHH
Q 007496 388 REHRIPYLGICLGMQVA 404 (601)
Q Consensus 388 re~~iP~LGICLGmQll 404 (601)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 88999999999999999
No 107
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.80 E-value=0.00012 Score=71.64 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=44.1
Q ss_pred ccCCCEEEECCCCCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 007496 360 LKGADGILVPGGFGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (601)
Q Consensus 360 L~~~DGIlvpGGfG~-------rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV 412 (601)
..++||+||+|.|=. .-++...+.+.|++++..|.||||.|+|++...+++-.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~ 119 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIK 119 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcc
Confidence 478999999998643 22557888999999999999999999999988777543
No 108
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.73 E-value=7.5e-05 Score=74.67 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCceEEEEEcccCCC-cchH-HHHHHHHHHc-cccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCC
Q 007496 295 HEPVRIAMVGKYTGL-SDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (601)
Q Consensus 295 ~~~v~IalVGkY~~l-~DaY-~SIi~aL~~a-g~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGG 371 (601)
+...+|+++. .... .+.| .++.+++++. |+++... .+.+ .+ +..+.+.++|+|++|||
T Consensus 29 ~~~~~i~~Ip-tAs~~~~~~~~~~~~a~~~l~G~~~~~~----~~~~---~~-----------~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 29 KARPKVLFVP-TASGDRDEYTARFYAAFESLRGVEVSHL----HLFD---TE-----------DPLDALLEADVIYVGGG 89 (212)
T ss_pred cCCCeEEEEC-CCCCCHHHHHHHHHHHHhhccCcEEEEE----eccC---cc-----------cHHHHHhcCCEEEECCc
Confidence 3567999995 4322 3344 4788899998 8765431 1111 00 01267889999999996
Q ss_pred CCCCc-----h--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 372 FGNRG-----V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 372 fG~rg-----~--eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
+.. + .++..+++.+.+++.|++|||.|||++.
T Consensus 90 --~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 90 --NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred --hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 321 1 2566778877788999999999999996
No 109
>PHA03366 FGAM-synthase; Provisional
Probab=97.73 E-value=0.00084 Score=82.99 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCC
Q 007496 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (601)
Q Consensus 294 ~~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG 373 (601)
+..+.||||+ .+-.. ..-.....|+..+|+++.. .++ .||... ..|.+++||++||||+
T Consensus 1025 ~~~~prVaIl-~~pG~-N~~~e~~~Af~~aGf~~~~----v~~--~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVL-LLPGC-PGPHALLAAFTNAGFDPYP----VSI--EELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEE-ECCCC-CCHHHHHHHHHHcCCceEE----EEe--ecCCCC-------------CccccceEEEEcCCCC
Confidence 3456899999 45322 2566889999999998532 233 233221 2278899999999986
Q ss_pred CC-------ch-------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 007496 374 NR-------GV-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (601)
Q Consensus 374 ~r-------g~-------eg~i~aik~ar-e~~iP~LGICL-GmQlla 405 (601)
.- ++ +...++++... +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 52 11 23345555555 45899999997 999996
No 110
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.73 E-value=0.00055 Score=71.72 Aligned_cols=206 Identities=12% Similarity=0.178 Sum_probs=114.3
Q ss_pred CceEEEEEcccCCCc-chHHHHHHHHHHccccceeEEEEEeecCCCcccccc-cCCchhhhHHHHhc--cCCCEEEECCC
Q 007496 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLL--KGADGILVPGG 371 (601)
Q Consensus 296 ~~v~IalVGkY~~l~-DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~-~~~p~~y~~a~~~L--~~~DGIlvpGG 371 (601)
.+++|+|+ +--..+ +.-..+++.|......+ ++.|+..+.-...+. .+-.++|-.-++.+ ..+||+||+|.
T Consensus 34 rpL~I~IL-NLMP~K~~TE~Q~lRlL~ntplqv----~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILIL-NLMPKKIETENQFLRLLSNSPLQV----NITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEE-ecCCccHHHHHHHHHHhcCCCCce----EEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 36899999 343222 23345667775544433 334444332222111 01111222223333 58999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCC
Q 007496 372 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (601)
Q Consensus 372 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~G 444 (601)
|=. .-++...+.+.|++++-...|.||.|.|.+..-+ +|++.- .+++
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~----yGI~K~---------------~l~~------- 162 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYF----YGIPKY---------------TLPE------- 162 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH----cCCCcc---------------ccCC-------
Confidence 643 2256788899999999999999999999975432 222210 0111
Q ss_pred CceeeCceeEEEccCCchhhhccCCceeE-eeeeceeeeeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEc
Q 007496 445 GTMRLGSRRTYFQIKDCKSAKLYGNRTFI-DERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 523 (601)
Q Consensus 445 gtmrLG~~~v~l~~~~s~l~~lyg~~~~I-~erhrHrYeVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQ 523 (601)
-.+|-++....+.+++++++-. ...+ ..||. +++.+.+.. ..+|++++.+++.. +-++..+++..+ =+|
T Consensus 163 --KlfGVf~h~~~~~~pL~rGfdd-~f~~PhSR~t---~i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r~v-fi~ 232 (300)
T TIGR01001 163 --KLSGVYKHDIAPDSLLLRGFDD-FFLAPHSRYA---DFDAEDIDK--VTDLEILAESDEAG-VYLAANKDERNI-FVT 232 (300)
T ss_pred --ceEEeecCccCCCCccccCCCC-ccccCCCCCC---CCCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCCEE-EEc
Confidence 1123333322233345555431 1111 23332 355444432 36899999887655 677777876543 599
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHh
Q 007496 524 FHPEYKSRPGKPSPLFLGLIAAAC 547 (601)
Q Consensus 524 FHPE~ss~p~~p~pLF~~Fv~aa~ 547 (601)
-|||+... -|-..+.+...
T Consensus 233 GH~EYd~~-----TL~~EY~RD~~ 251 (300)
T TIGR01001 233 GHPEYDAY-----TLHQEYVRDIG 251 (300)
T ss_pred CCCccChh-----HHHHHHHHHHH
Confidence 99999754 45555554443
No 111
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.65 E-value=6.2e-05 Score=68.70 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=50.2
Q ss_pred cCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch-----hHH
Q 007496 306 YTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-----QGK 380 (601)
Q Consensus 306 Y~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~-----eg~ 380 (601)
.+....+...+.+.|+... .+..++++++... .|+ .++|.|++|||.-.... .+
T Consensus 8 ~g~~~~~~~~~~~~L~~~~-------~v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~L~~~g- 66 (114)
T cd03144 8 PGASPGSLKHLAELLRLYL-------AVSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRALNGKG- 66 (114)
T ss_pred CCCCHHHHHHHHHHHhhcc-------ceeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHHHHhhC-
Confidence 3334445667777777654 1233555544321 233 58999999996333221 24
Q ss_pred HHHHHHHHHcCCCEEEEehhHHHH
Q 007496 381 ILAAKYAREHRIPYLGICLGMQVA 404 (601)
Q Consensus 381 i~aik~are~~iP~LGICLGmQll 404 (601)
.++++...+++.|+||||+|-=++
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 677887778899999999998776
No 112
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.62 E-value=6e-05 Score=72.02 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=42.2
Q ss_pred HhccCCCEEEECCCCCCCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 358 KLLKGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 358 ~~L~~~DGIlvpGGfG~rg------~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
+.+.++|+|+||||+-.-. ..++..+|+.+.+++.|++|||-|||+|.-.+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 3468999999999875421 24678899999999999999999999998654
No 113
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.60 E-value=0.0017 Score=80.00 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=58.2
Q ss_pred CceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC
Q 007496 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r 375 (601)
.+.||||+ .+-.. ..-.....|++.+|+++.. .|+. ||... ..|++++||+++|||+.-
T Consensus 928 ~~p~VaIl-~~pG~-N~~~e~~~Af~~aGf~~~~----v~~~--dl~~~-------------~~l~~f~glv~~Ggfsy~ 986 (1202)
T TIGR01739 928 PRHQVAVL-LLPGQ-SVPHGLLAALTNAGFDPRI----VSIT--ELKKT-------------DFLDTFSGLIIGGASGTL 986 (1202)
T ss_pred CCCeEEEE-eCCCC-CCHHHHHHHHHHcCCceEE----EEec--cCCCC-------------CchhheEEEEEcCcCCCC
Confidence 45689998 45322 2556889999999998432 3332 33211 235688999999998642
Q ss_pred c--h------------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 007496 376 G--V------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (601)
Q Consensus 376 g--~------------eg~i~aik~ar-e~~iP~LGICL-GmQlla 405 (601)
. . ....++++... +.+.+.||||- |+|+|+
T Consensus 987 D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 987 DSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred ccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 1 1 12334455554 45899999997 999996
No 114
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.39 E-value=0.00043 Score=55.27 Aligned_cols=45 Identities=36% Similarity=0.626 Sum_probs=37.1
Q ss_pred ccCCCEEEECCCCCCCch----hHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007496 360 LKGADGILVPGGFGNRGV----QGKILAAKYAREHRIPYLGICLGMQVA 404 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~----eg~i~aik~are~~iP~LGICLGmQll 404 (601)
..++|++++|||...... ...++.++...+++.|++|+|.|+|++
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 578999999999877543 466777877778899999999999874
No 115
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.76 E-value=0.1 Score=56.88 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=55.3
Q ss_pred EEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc--
Q 007496 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 376 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg-- 376 (601)
+|.|--.-+....+-...+.+|+..-.. . ..+..+++..|..+ .| +.+++.+|+|||...+-
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p-~--y~V~~v~~~~l~~~-----------pw--~~~~~LlV~PGG~d~~y~~ 65 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSP-H--YAVIPVTADELLNE-----------PW--QSKCALLVMPGGADLPYCR 65 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCC-C--eEEEEeCHHHhhcC-----------cc--ccCCcEEEECCCcchHHHH
Confidence 4544432333333444455666543211 1 23455666655431 13 46789999999975542
Q ss_pred -hhHH-HHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 377 -VQGK-ILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 377 -~eg~-i~aik~are~~iP~LGICLGmQlla 405 (601)
..+. ...||...+++--+||||.|--.++
T Consensus 66 ~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 66 SLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred hhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 2233 6788888888999999999988775
No 116
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.54 E-value=0.0042 Score=62.71 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.0
Q ss_pred ccCCCEEEECCCCCC--------------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 360 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 360 L~~~DGIlvpGGfG~--------------rg~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
..++|+|++|||+|. |..+.....++.+.++++|+..||-|-++|+-+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 468999999999874 2245688889999999999999999999997544
No 117
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.50 E-value=0.0099 Score=60.78 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHhcCCCCceEEEEEcccCCCc---chHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhh
Q 007496 279 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK 354 (601)
Q Consensus 279 ~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~---DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~ 354 (601)
+-|..|..+...+-. ...||++|- +.... +.|. +..++++..|+++.. ++..+
T Consensus 15 ~~l~~~~~~~~~~~~--~~~~v~fIP-tAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~~-------------- 71 (233)
T PRK05282 15 GYLEHALPLIAELLA--GRRKAVFIP-YAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRVA-------------- 71 (233)
T ss_pred chHHHHHHHHHHHHc--CCCeEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccch--------------
Confidence 356777777776643 346899994 65432 3443 567888888876321 22110
Q ss_pred HHHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 355 AAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 355 ~a~~~L~~~DGIlvpGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
+..+.|.++|+|+++||--.+ ...++..+++.+.++++|+.|+|.|.-+++-.
T Consensus 72 d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 72 DPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred hhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhcc
Confidence 112568899999999973221 12356778888888999999999999887643
No 118
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.39 E-value=0.0059 Score=61.61 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.5
Q ss_pred ccCCCEEEECCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007496 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r--------------g~eg~i~aik~are~~iP~LGICLGmQllaief 408 (601)
+.++|+|+||||+|.. ..+..++.++.+.++++|+.+||-|-++|+-+.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 4579999999998631 134678889999999999999999999997654
No 119
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.14 E-value=0.0076 Score=58.25 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=37.3
Q ss_pred CCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 362 ~~DGIlvpGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.+|+|+||||++.. ..+.....++.+.++++|+.|||.|.++|+-
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 68999999997642 2245678888888999999999999999974
No 120
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=95.94 E-value=0.011 Score=55.88 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=38.0
Q ss_pred cCCCEEEECCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 361 KGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg---~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.++|+|+||||++... .+.....++++.++++|+.|||.|.++|+-
T Consensus 59 ~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 107 (166)
T TIGR01382 59 EEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLIS 107 (166)
T ss_pred HHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 3689999999977322 246788899999999999999999999973
No 121
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.60 E-value=0.014 Score=65.11 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=41.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (601)
||.|.| -|..|..||=+.++-+=++|..+|++|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI 54 (486)
T COG1492 1 MKAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI 54 (486)
T ss_pred CCccEE-EeccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE
Confidence 444444 36889999999999999999999999997763 23332 34788888885
No 122
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.40 E-value=0.078 Score=50.52 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=80.3
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCCCCCCC
Q 007496 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (601)
Q Consensus 7 tggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~l~~~~ 86 (601)
..+--.|.||=.+|+.++..|...|+||-.+-.||--.. .. +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~~------------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----IP------------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----ch------------------------HHH--------
Confidence 334457899999999999999999999999998885421 10 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHH
Q 007496 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (601)
Q Consensus 87 n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~ 166 (601)
+ -|...+.++++++... ...+|+|||-.++.++|. . +.+++
T Consensus 48 ----------------~----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~---~-~~~~~-- 88 (169)
T cd02037 48 ----------------R----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE---H-LTLAQ-- 88 (169)
T ss_pred ----------------h----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH---H-HHHHh--
Confidence 0 0122345666666553 257999999999998761 1 22221
Q ss_pred hhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEec
Q 007496 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 218 (601)
Q Consensus 167 ~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~ 218 (601)
....+..++|.- .+..--+-+...++.++..++...++|+.-
T Consensus 89 --------~~~ad~viiV~~--p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~ 130 (169)
T cd02037 89 --------SLPIDGAVIVTT--PQEVALDDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred --------ccCCCeEEEEEC--CchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 011133333322 344444556667788899999888887743
No 123
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.27 E-value=0.1 Score=48.30 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=37.3
Q ss_pred CCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 362 GADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 362 ~~DGIlvpGGfG~r----g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.+|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~ 110 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEA 110 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHH
Confidence 58999999987642 3456778888888899999999999998863
No 124
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=95.26 E-value=0.036 Score=55.11 Aligned_cols=166 Identities=18% Similarity=0.204 Sum_probs=90.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCCCC
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~l~ 83 (601)
||||| .=++.||=.+++.+.+.|+.+|++|-..| |.++|--... .|=|.--..+++++...
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56654 46999999999999999999999998865 5666531110 12233335555544322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--Ccc
Q 007496 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (601)
Q Consensus 84 ~~~n~t~gkiy~~v----i~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdi--es~ 157 (601)
. ...++-.|... +..++.| . +--.+.|++.+++++ .++|+||||-.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11112222111 1111111 1 123467888887764 46899999988766432 111
Q ss_pred hHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCC
Q 007496 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (601)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~ 220 (601)
-..+-+++ .+ --+..|.- + ..+. ..-+.-+++.++..|+...++|+....
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~---~~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~ 173 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---V---KLGC--INHTLLTLEAIRARGLPLAGWVANGIP 173 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---C---CCcH--HHHHHHHHHHHHHCCCCeEEEEEccCC
Confidence 12222333 32 11333221 1 1122 224567788888889999888885433
No 125
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=95.26 E-value=0.028 Score=53.17 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.5
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 361 ~~~DGIlvpGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
..+|+|+||||++.. .....+..++.+.++++|+.|||-|-++|+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 368999999998543 235677889999899999999999999986
No 126
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=94.98 E-value=0.036 Score=56.49 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=39.6
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 360 L~~~DGIlvpGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
..++|+|+||||.|- +..+...+.++.+.++++|+..||-|-++|.-
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~ 142 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILAN 142 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 468999999999763 23456788899999999999999999998864
No 127
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=94.97 E-value=0.096 Score=52.93 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=98.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||-|||||- =.+.||=.+++.+.+.|+.+|++|..+| |.++|-.- + +++..|-|.--+.+..+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~-~~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-T-PEGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-C-CCCCchHHHHHHHHhcCC
Confidence 467888874 4899999999999999999999998877 78888432 2 233445444445555555
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 007496 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (601)
Q Consensus 81 ~l~~~~-n---~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgd--i 154 (601)
..+-+. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 433111 1 1111 1111211 111 2357888887764 3789999997762221 0
Q ss_pred CcchHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCC
Q 007496 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (601)
Q Consensus 155 es~pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~ 221 (601)
+...+.+.++++ +-. +.+| + + ...|. .--|.-+++.+++.|+..-++|+-...+
T Consensus 123 ~~~~~~d~~~~~----~~p-vilV--~--~--~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----QLP-VLMV--V--G--IQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----CCC-EEEE--E--C--CCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112334444442 211 1111 1 0 01233 2345567788889999999999965443
No 128
>PRK13768 GTPase; Provisional
Probab=94.68 E-value=0.19 Score=51.73 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+.|+|+|- +|.||-.++..+...|+..|.+|..+.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45566655 9999999999999999999999999999984
No 129
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=94.56 E-value=0.043 Score=53.21 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=39.4
Q ss_pred cCCCEEEECCC-CCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 361 KGADGILVPGG-FGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 361 ~~~DGIlvpGG-fG~rg---~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
+++|+|++||| .|... .+..+..++++.++++|+..||-|=++|.
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 58999999999 77643 25688899999999999999999999995
No 130
>PRK04155 chaperone protein HchA; Provisional
Probab=94.54 E-value=0.052 Score=57.19 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=39.2
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 360 L~~~DGIlvpGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
..++|+|+||||.|. +..+...+.++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 468999999999774 3456688899999999999999999998764
No 131
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.39 E-value=0.31 Score=49.46 Aligned_cols=47 Identities=28% Similarity=0.236 Sum_probs=35.7
Q ss_pred cCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007496 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (601)
Q Consensus 361 ~~~DGIlvpGGfG~r------g~eg~i~aik~are~~iP~LGICLGmQllaie 407 (601)
..+|-+++.||-... ....+-.+++.+.++++|+|.||-|.|+|.--
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 578988888874321 11235567899999999999999999999753
No 132
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.33 E-value=0.11 Score=43.12 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=29.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
|+++|.- |.||-.+++.+...|+..|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5677666 99999999999999999999999888
No 133
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=94.31 E-value=0.03 Score=52.43 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=36.3
Q ss_pred ccCCCEEEECCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 360 LKGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 360 L~~~DGIlvpGGfG~----rg~-eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
..++|+|+||||.+. +.. +.....++++.++++|+.+||-|-.+|+
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~ 85 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLA 85 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhh
Confidence 356999999999873 222 5678889999999999999999997775
No 134
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.04 E-value=0.31 Score=52.46 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=50.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEecCCccc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGEV 67 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~-------d~gtmsp-~~hgevfv~~dg~e~ 67 (601)
.|-|||- +|-||=.....+...|+.+|++|..+.+||.-.. |.-.|.. .+|..||+-..++..
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~ 128 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSG 128 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcc
Confidence 4667775 8999999999999999999999999999998776 5555653 466677777766644
No 135
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=93.77 E-value=0.1 Score=53.32 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=38.8
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 360 L~~~DGIlvpGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
..++|+|++|||.|. +..+...+.++++.++++|+-.||-|-+++.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 368999999999764 3346678889999999999999999998774
No 136
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.72 E-value=0.26 Score=48.96 Aligned_cols=106 Identities=17% Similarity=0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcccCCC-cch-HHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc
Q 007496 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (601)
Q Consensus 283 ~w~~l~~~~~~~~~~v~IalVGkY~~l-~Da-Y~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L 360 (601)
-++.+..... ....+|+++. .... .+. ...+.++++..|++... +.+++.. . + .+..+.|
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~---~~~~~~~--~------~----~~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVH---LLLIDTA--N------D----PDVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEE---EeccCCC--C------C----HHHHHHH
Confidence 3444444432 2457899994 4432 112 34677888888887533 2222220 0 1 1234678
Q ss_pred cCCCEEEECCCCCCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 361 KGADGILVPGGFGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg---~--eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.++|+|+++||--.+- + .+...+++....++.|+.|+|.|..++.-
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 9999999999632211 1 12455555555589999999999999963
No 137
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.59 E-value=0.15 Score=49.22 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=39.8
Q ss_pred hccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 359 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 359 ~L~~~DGIlvpGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.+.++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 35688999999997653 3466788899888899999999999999863
No 138
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.16 E-value=0.15 Score=48.81 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.2
Q ss_pred cCCCEEEECCCCCC--CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 361 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 361 ~~~DGIlvpGGfG~--rg~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.++|.|+||||+.. ...+...+.++.+.+++.|+.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 57899999999753 23456788899998999999999999999974
No 139
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=93.12 E-value=0.13 Score=51.94 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.1
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r----g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
+.++|+|+||||++.. ..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 3578999999998642 3456888899999999999999999998863
No 140
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.02 E-value=0.17 Score=49.13 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.8
Q ss_pred ccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 360 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r------g~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
..++|.|+||||.+.. ..+..+..++.+.+++.++.+||-|..+|+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 118 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLA 118 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHH
Confidence 4678999999986542 235677788888889999999999999986
No 141
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=92.73 E-value=0.17 Score=47.42 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=37.9
Q ss_pred cCCCEEEECCCCC-CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 361 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 361 ~~~DGIlvpGGfG-~r---g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
.++|.|+||||++ .. ..+..++.++.+.++++++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 6899999999983 22 2356778888888999999999999999974
No 142
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=92.46 E-value=0.23 Score=48.50 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=36.4
Q ss_pred cCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 361 ~~~DGIlvpGGfG~r----g~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
.++|.|+||||++.. ..+..+..++.+.++++|+.+||-|-.++.
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 479999999997532 234578888999999999999999998753
No 143
>PRK14974 cell division protein FtsY; Provisional
Probab=92.46 E-value=2 Score=46.35 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+.|.++| ..|.||=.+++.++..|+..|++|..+-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4678888 88999999999999999999999999888877
No 144
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.46 E-value=2.3 Score=42.74 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|-|.|+++ =-|.||=.+|+.++..|..+|+||-.+-.||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 55666543 46889999999999999999999999999984
No 145
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.38 E-value=0.77 Score=48.39 Aligned_cols=44 Identities=32% Similarity=0.488 Sum_probs=38.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
++.|.|+|. .|-||=.++..++.+|..+|++|..+.+||+-+.-
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~ 77 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFT 77 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 467888975 89999999999999999999999999999975443
No 146
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=92.36 E-value=2.7 Score=50.19 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=102.8
Q ss_pred ceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-
Q 007496 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r- 375 (601)
..|+||+-.-+ ...+.....++..||++. +. +.-.||.... ..|+++-||..+|||...
T Consensus 1058 ~PkVAilREeG--vNg~rEMa~af~~AgF~~-~D-----VtmtDlL~G~------------~~ld~frGlaf~GGFSYaD 1117 (1320)
T KOG1907|consen 1058 APKVAILREEG--VNGDREMAAAFYAAGFET-VD-----VTMTDLLAGR------------HHLDDFRGLAFCGGFSYAD 1117 (1320)
T ss_pred CCceEEeeccc--cccHHHHHHHHHHcCCce-ee-----eeeehhhcCc------------eeHhHhcceeeecCcchHh
Confidence 46999995433 347888999999999984 11 2223333221 236788999999998653
Q ss_pred ------ch-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcc
Q 007496 376 ------GV-------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKT 441 (601)
Q Consensus 376 ------g~-------eg~i~aik~ar-e~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~ 441 (601)
|+ +.........+ ....=-||||-|.|+|+.- |+- .+. ....|-+.+...
T Consensus 1118 vLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~L------g~i--~p~----~~~~p~~~l~~N---- 1181 (1320)
T KOG1907|consen 1118 VLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRL------GWI--GPE----VGKWPDVFLDHN---- 1181 (1320)
T ss_pred hhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHh------ccc--Ccc----ccCCCceeeecc----
Confidence 22 23333333332 2345679999999999842 221 110 011222221110
Q ss_pred cCCCc--eeeCceeEEEccCCch-hhhccCCceeEeeeec-eeeeeC-hhhHhhhccCCeEEEEEe-------------C
Q 007496 442 HMGGT--MRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHR-HRYEVN-PDMIARLENAGLSFTGKD-------------E 503 (601)
Q Consensus 442 h~Ggt--mrLG~~~v~l~~~~s~-l~~lyg~~~~I~erhr-HrYeVn-~~~v~~le~~Gl~~~g~s-------------~ 503 (601)
--+. -|+ -.+++..+.|. +..+-+..--++..|- -|+.+. .+.++.|+..|+..+-+. +
T Consensus 1182 -es~rfE~r~--~~vkI~~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNp 1258 (1320)
T KOG1907|consen 1182 -ESGRFECRF--GMVKIESNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNP 1258 (1320)
T ss_pred -cccceeeeE--EEEEeCCCchhhhccccCCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCC
Confidence 0010 011 12333332222 2233332334556662 233343 345667777787666543 2
Q ss_pred CCCe--EEEEEECCCCcEEEEcccCCCcCC
Q 007496 504 TSQR--MEIVELPNHPYFIGVQFHPEYKSR 531 (601)
Q Consensus 504 dg~~--vE~IE~~~hpffvGVQFHPE~ss~ 531 (601)
+|.+ +.+|..++.. +++..-|||....
T Consensus 1259 NGS~~gIAgicSpdGR-hLAMMPHpER~~l 1287 (1320)
T KOG1907|consen 1259 NGSPDGIAGICSPDGR-HLAMMPHPERVFL 1287 (1320)
T ss_pred CCCcccceeeeCCCCC-eeeccCCchheee
Confidence 3321 5666677766 4588889987654
No 147
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=92.24 E-value=0.93 Score=53.33 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
||-|||+| .=++.||=.++..|...|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57888884 56999999999999999999999999999
No 148
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=91.75 E-value=0.54 Score=48.33 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|+||++|. .|.||=.+|+.++..+...|.||-.+-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 9999999999999999999999999999994
No 149
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=91.54 E-value=0.29 Score=46.74 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r----g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
..++|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 4679999999986421 2345778888888899999999999999973
No 150
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=91.02 E-value=0.33 Score=46.45 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.1
Q ss_pred ccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
...+|.|+||||.+.. ..+..+..++.+.++++|+.+||-|--+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4579999999997643 235577788888888999999999998775
No 151
>PRK10867 signal recognition particle protein; Provisional
Probab=91.02 E-value=3.4 Score=46.19 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~-g~~v~~~k~dpy 42 (601)
+.|+++| ..|.||=.+++.++..|+.. |.+|..+-.|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4677887 89999999999999999998 999999999997
No 152
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.98 E-value=4.6 Score=42.17 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+.|.++| ..|.||=.+++.++..|+..|.+|..+-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999996
No 153
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.71 E-value=1.3 Score=44.23 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
||.|.|+++ =.|.||=.+|+-++..|..+|+||-.|-.||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 676766543 46889999999999999999999999999996
No 154
>PHA02518 ParA-like protein; Provisional
Probab=90.37 E-value=1.1 Score=43.70 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.2
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
=-|.||=.+|+.++..|..+|++|..|-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
No 155
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=90.33 E-value=0.56 Score=45.27 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.5
Q ss_pred ccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 360 L~~~DGIlvpGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
..++|.|+||||++.. ..+..+..++.+.+++..+.+||-|-.+++
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 3578999999986643 346678889998899999999999999986
No 156
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=90.28 E-value=0.36 Score=45.78 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=36.9
Q ss_pred ccCCCEEEECCCCCC---CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 360 LKGADGILVPGGFGN---RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 360 L~~~DGIlvpGGfG~---rg~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
...+|.|+||||++. ...+..+..++.+..++.++.+||-|..+++-
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 108 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAE 108 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHH
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhh
Confidence 568999999999982 22356677787777888999999999999973
No 157
>PRK11249 katE hydroperoxidase II; Provisional
Probab=90.00 E-value=1.1 Score=53.22 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=61.6
Q ss_pred CceEEEEEcccCCC-cchHHHHHHHHHHccccceeEEEEEeecCCCccc---ccccCCchhhhHHHHhccCCCEEEECCC
Q 007496 296 EPVRIAMVGKYTGL-SDAYLSILKALLHASVDLRKKLVIDWIPACDLED---ATEKENPDAYKAAWKLLKGADGILVPGG 371 (601)
Q Consensus 296 ~~v~IalVGkY~~l-~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~---~~~~~~p~~y~~a~~~L~~~DGIlvpGG 371 (601)
+..||||+- +... ...+..+.++|+.+|+.+.+ .......+.. ..+..+ ..|..+ ....+|+|+||||
T Consensus 596 ~gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~V----VSp~~G~V~~s~G~~I~aD-~t~~~~--~Sv~FDAVvVPGG 667 (752)
T PRK11249 596 KGRKVAILL-NDGVDAADLLAILKALKAKGVHAKL----LYPRMGEVTADDGTVLPIA-ATFAGA--PSLTFDAVIVPGG 667 (752)
T ss_pred cccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEE----EECCCCeEECCCCCEEecc-eeeccC--CccCCCEEEECCC
Confidence 456888884 4333 33556888999999976543 2211111100 000000 001100 0125899999998
Q ss_pred CCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 372 FGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 372 fG~r----g~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
.... .....+..++.+.++.+|+..||-|.++|+
T Consensus 668 ~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLa 705 (752)
T PRK11249 668 KANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKA 705 (752)
T ss_pred chhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 6432 234577888999999999999999999997
No 158
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=89.73 E-value=2.3 Score=42.44 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.3
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
-=.|.||=.+|+.++..|..+|++|-.+.+||.
T Consensus 8 ~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 8 GKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 346789999999999999999999999999994
No 159
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.45 E-value=2.1 Score=40.50 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
|.++|. +|-||=.++..++..|+.+|.+|..+..||..
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455664 78999999999999999999999999999843
No 160
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=86.54 E-value=8.1 Score=39.32 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
||.|-|+ +-==|.||=.+|..++..|..+|++|..+-.||--|.
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~ 44 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRPL 44 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Confidence 5655443 2334679999999999999999999999999998653
No 161
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=86.14 E-value=1.3 Score=46.73 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=37.8
Q ss_pred hccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 359 LLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 359 ~L~~~DGIlvpGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
....+|.|+||||.+.. .....+..++.+.+++.++.|||-|--+|+-
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 121 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAA 121 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHh
Confidence 45688999999986532 2345777888888889999999999988763
No 162
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.06 E-value=2.9 Score=36.23 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.2
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 7 tggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
-.|-=.|.||=.+|+.++..|..+|.+|-.+-.||.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 344556899999999999999999999999999998
No 163
>PRK10818 cell division inhibitor MinD; Provisional
Probab=85.98 E-value=9 Score=39.12 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|-|-|+ +-=.|.||=.+|+.++..|..+|.+|-.+-+||.
T Consensus 3 kviav~-s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVT-SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEE-eCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 555555 3457899999999999999999999999999996
No 164
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.97 E-value=5.8 Score=44.31 Aligned_cols=141 Identities=23% Similarity=0.338 Sum_probs=82.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~-~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (601)
.|+++| ..|.||=.+++.++..|+ .+|.+|..+-+|+|--- .. +
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~---a~---~--------------------------- 145 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA---AI---E--------------------------- 145 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH---HH---H---------------------------
Confidence 455555 579999999999999987 68999999999995210 00 0
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcch
Q 007496 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (601)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit--~~i-~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~p 158 (601)
+-++.+...|-.+...+.-. .+| ++.++.+. ...+|+|||...|-.. +.. .
T Consensus 146 -----------------QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 146 -----------------QLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred -----------------HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 11122222333333333211 133 34444442 3568999999999865 222 3
Q ss_pred HHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcC--CCcccEEEEe
Q 007496 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ--GLTPNILACR 217 (601)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~--Gi~pd~iv~R 217 (601)
-++.++++..-+.++.+++| +.+. | .|.++...+.. .+..+++|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888877766655333 3322 2 25566544432 3556777753
No 165
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.68 E-value=5.1 Score=44.59 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=86.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (601)
+.|.+.|- .|.||=.+++.|+..|..+|++|..+-.|||- +|..+-..
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQLk--------------------------- 289 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQLQ--------------------------- 289 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHHH---------------------------
Confidence 35666665 99999999999999999999999999999885 12111111
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 007496 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (601)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (601)
.|.. -+|-.|-++. -.+++++.|..++. ..+.|+|||...|.-- -....++
T Consensus 290 -----------~yae---------~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 290 -----------DYVK---------TIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred -----------HHhh---------hcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 1111 1332332222 23677788877752 2368999999888843 2344566
Q ss_pred HHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEE
Q 007496 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (601)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (601)
.++++.....+..++++ +++ -.|.+-....++.++. +.+|.+|.
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~ 384 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVF 384 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEE
Confidence 66666655554433222 433 2233333455556655 44566665
No 166
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.95 E-value=11 Score=35.81 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+.++| ..|-||=.+++.+...|...|.+|..+-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 36899999999999999999999999999985
No 167
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=84.63 E-value=1.7 Score=44.44 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
||.|.|+|- ||-||=.++..+-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 889999998 9999999999999999999999999993
No 168
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=84.30 E-value=20 Score=37.54 Aligned_cols=197 Identities=17% Similarity=0.274 Sum_probs=104.4
Q ss_pred CceEEEEEcccCCCc-chHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCC
Q 007496 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 372 (601)
Q Consensus 296 ~~v~IalVGkY~~l~-DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGf 372 (601)
.+++|.|+- --.-+ ..-..+++.|... .+.|.+...++++-.-.. +..+-..+|-.-|+.+ .++||.||+|.|
T Consensus 34 RPL~IlilN-LMP~Ki~TE~Q~lRLL~ns--PLQV~itll~~~sh~~Kn-Tp~eHl~~FY~tfeeVk~~~FDG~IiTGAP 109 (307)
T COG1897 34 RPLKILILN-LMPKKIETETQILRLLGNS--PLQVDITLLRIDSHESKN-TPAEHLNSFYCTFEEVKDQKFDGLIITGAP 109 (307)
T ss_pred ccceeeeee-cCchhHHHHHHHHHHhcCC--CceEEEEEEEecCcCCCC-CcHHHHHHHhhcHHHHhhcccCceEEeCCc
Confidence 356788883 32110 0112333433322 334555566666543211 1111112233334444 489999999986
Q ss_pred CCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCCCccCCCCCCCeeeeCCCCCcccCCC
Q 007496 373 GNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 445 (601)
Q Consensus 373 G~r-------g~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV~gl~da~S~Ef~~~~~~pvi~~mpe~~~~h~Gg 445 (601)
=.. -++.+.+.+.|...+=--.|=||.|.|.+...|- |++.-. ||+ ..
T Consensus 110 ve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~y----Gv~K~~---------------l~~----Kl-- 164 (307)
T COG1897 110 VELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFY----GVPKYT---------------LPE----KL-- 164 (307)
T ss_pred ccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHc----CCCccc---------------cch----hh--
Confidence 432 2567788889998888889999999999875542 332110 111 00
Q ss_pred ceeeCceeEE-EccCCchhhhccCCceeEeeeeceee-eeChhhHhhhccCCeEEEEEeCCCCeEEEEEECCCCcEEEEc
Q 007496 446 TMRLGSRRTY-FQIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 523 (601)
Q Consensus 446 tmrLG~~~v~-l~~~~s~l~~lyg~~~~I~erhrHrY-eVn~~~v~~le~~Gl~~~g~s~dg~~vE~IE~~~hpffvGVQ 523 (601)
.|.++-. +.+.+.+++++- +. ...-| -|| +++.+.+.. -.+|++++.+.... +-.+.-+++..+ =+-
T Consensus 165 ---~GVy~h~~l~p~~~l~rGfd-d~--f~~Ph-SR~t~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~i-fv~ 233 (307)
T COG1897 165 ---SGVYKHDILSPHSLLTRGFD-DS--FLAPH-SRYTDVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRNI-FVT 233 (307)
T ss_pred ---hceeeccccCccchhhccCC-cc--ccCcc-cccccCCHHHHhh--CCCceeeecccccc-eEEEecCCCCeE-EEe
Confidence 1233322 233322233221 11 11222 122 466666655 36799999886655 666776776643 567
Q ss_pred ccCCCcCCC
Q 007496 524 FHPEYKSRP 532 (601)
Q Consensus 524 FHPE~ss~p 532 (601)
-|||+....
T Consensus 234 gH~EYD~~t 242 (307)
T COG1897 234 GHPEYDATT 242 (307)
T ss_pred CCcchhhhH
Confidence 799998664
No 169
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=84.21 E-value=4.1 Score=38.45 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=26.1
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 10 VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
.-.|.||=.+|+.+...|+.+|+||-.+|
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k 33 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK 33 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 46789999999999999999999998854
No 170
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=84.11 E-value=2.2 Score=44.71 Aligned_cols=52 Identities=31% Similarity=0.345 Sum_probs=42.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc--ccCCCCC--CCccccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY--LNTDAGT--MSPFEHG 56 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy--ln~d~gt--msp~~hg 56 (601)
||.|-|+|- ||-||=..+..|-..|+.+| +|..||.||- .. -+|+ +.-++-|
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~-~~g~Ds~~~~~aG 56 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLN-PDGTDTGRHFDAG 56 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCC-CCCCCcHHHHHCC
Confidence 788889998 89999999999999999999 9999999993 22 4663 3333444
No 171
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=83.78 E-value=5.9 Score=39.54 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=34.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
++++| -.|.||=.+++.++..+...|+||-.+-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998765
No 172
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.53 E-value=1.8 Score=45.38 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~-g-~~v~~~k~dpyl 43 (601)
+.|.+.|. +|.||=.+++.++..|+.+ | ++|..+.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999874
No 173
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=83.16 E-value=5.5 Score=41.17 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcccCCC-cchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc
Q 007496 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (601)
Q Consensus 283 ~w~~l~~~~~~~~~~v~IalVGkY~~l-~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L 360 (601)
-|+.+++.... ...||+++. ..+. .+.| ....++|+..|+... .+.-+.+. +.. .+| +..+.+
T Consensus 16 i~~~~~~lag~--~~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v---~~l~i~~r--~~a---~~~----~~~~~l 80 (250)
T TIGR02069 16 ILREFVSRAGG--EDAIIVIIT-SASEEPREVGERYITIFSRLGVKEV---KILDVRER--EDA---SDE----NAIALL 80 (250)
T ss_pred HHHHHHHHhCC--CCceEEEEe-CCCCChHHHHHHHHHHHHHcCCcee---EEEecCCh--HHc---cCH----HHHHHH
Confidence 35555555433 235899994 3221 1233 256778888888531 12222211 000 111 223568
Q ss_pred cCCCEEEECCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 361 KGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg-----~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
.++|+|+++||--.+- ..+...+++.+.+++.|+.|+-.|.-+|+
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 8999999999732221 13456778888888999999999998874
No 174
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=82.00 E-value=2 Score=41.94 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=89.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCCC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~l 82 (601)
=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |.++|.. + |=|.-...++.+...
T Consensus 2 ~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~~ 59 (199)
T PF13500_consen 2 TIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLSE 59 (199)
T ss_dssp EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTCC
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCCc
Confidence 466664 45789999999999999999999998776 8888876 1 224444566666554
Q ss_pred CCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 007496 83 TRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (601)
Q Consensus 83 ~~~--~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (601)
+.. +-++-..-....+..++.|. .++ .++|. .++++ .+.|++|||=-|.+. .....-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~--~~~~~~ 118 (199)
T PF13500_consen 60 PPDDPSPYTFDEPASPHLAAELEGV----DID-----LERII--YKELA--------EEYDVVLVEGAGGLM--VPIFSG 118 (199)
T ss_dssp CHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTT--SECCTT
T ss_pred ccccccccccCcccCHHHHhhccCC----ccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccC--cccccC
Confidence 322 22222222233344443331 111 22222 24443 477999999555444 222222
Q ss_pred HHHHHHhhHcCCCCEEEEeeeeeeeecCCCcccc-CCccchhhhhhcCCCcccEEEEec
Q 007496 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRS 218 (601)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~kt-kptq~sv~~Lrs~Gi~pd~iv~R~ 218 (601)
.-..++...++-. ++ .+.+ ++..| -=+..+++.++..|+..-++|.-.
T Consensus 119 ~~n~dia~~L~a~-vI-------lV~~--~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 119 DLNADIAKALGAP-VI-------LVAS--GRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp EEHHHHHHHHT-E-EE-------EEEE--SSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred hHHHHHHHHcCCC-EE-------EEeC--CCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 3333444444422 22 2222 22222 112346677888999999998865
No 175
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=81.44 E-value=2.7 Score=44.22 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=39.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
|| |.|+| =-|+||=.+|+.++..|..+|+||-.|-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 78 77887 788999999999999999999999999999987753
No 176
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=81.13 E-value=2.4 Score=43.63 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
||-|-|+ | =-|+||=.+|..|+..|..+|+||-.+-.||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6778788 5 78999999999999999999999999999999885
No 177
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.68 E-value=2.5 Score=44.44 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=39.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCC
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGT 49 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gt 49 (601)
|-|||| ||-||=.++.++..+|+..|.+|..|..|.|--.|--.
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~ 45 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERME 45 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchh
Confidence 678996 89999999999999999999999999999998755443
No 178
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=79.51 E-value=3.5 Score=42.62 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~ 47 (601)
||-|.++ | =.|.||=.+|..++..|..+|+||-.+-.||-.|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 7778888 4 8899999999999999999999999999999877633
No 179
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=79.45 E-value=3.4 Score=41.98 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=40.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
||-|.|. | =-|.||=.+|+-++..|..+|+||-.|-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 7878888 5 899999999999999999999999999999998853
No 180
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.24 E-value=3.3 Score=44.53 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=43.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (601)
|++||+|| =.|+||=.+||+++..|-+.|.||-.+-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655444
No 181
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=78.20 E-value=3 Score=44.28 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=36.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
||+||++|= =|+||=.+||+++..+..+|.||-.+-+||-=|
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 899999983 377999999999999999999999999999543
No 182
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=78.03 E-value=3.8 Score=41.85 Aligned_cols=184 Identities=21% Similarity=0.272 Sum_probs=113.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (601)
||-+|||| .=-++||=++++-+-..|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45789999999999999999999998777 666664 111114567778888888
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccc--ccCcch
Q 007496 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG--DIESMP 158 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvg--dies~p 158 (601)
.++.+ .++--.|+.-..--..-+.-|+++. .++|.++..+. ..+.|.+|||=-|=+. =-|...
T Consensus 63 ~~~~~--~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSYE--LINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Ccccc--cccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCceeeecCCccc
Confidence 76621 2222223322221111222244422 23344444443 3488999999655431 012367
Q ss_pred HHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCCchhhcccc
Q 007496 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLS 231 (601)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kis 231 (601)
|..=++|++..+ .+|=-+ .| |-.- -|=-|++.+|+.||...++|.-+..+.+........
T Consensus 128 ~~D~~~~~~lpv-----ILV~~~---~L---GtIN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~~ 187 (223)
T COG0132 128 FADLAVQLQLPV-----ILVVGI---KL---GTIN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEINA 187 (223)
T ss_pred HHHHHHHcCCCE-----EEEecC---Cc---cHHH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHHH
Confidence 778888887543 222111 12 2221 355578899999999999999988877776554443
No 183
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=77.96 E-value=4.7 Score=38.85 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|+-|-|+|- ||-||-..+.-+-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 788888887 8999999999999999999999999999875
No 184
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=77.61 E-value=3.6 Score=42.19 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=34.8
Q ss_pred cCCCEEEECCC-CCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007496 361 KGADGILVPGG-FGNRG---VQGKILAAKYAREHRIPYLGICLGMQVA 404 (601)
Q Consensus 361 ~~~DGIlvpGG-fG~rg---~eg~i~aik~are~~iP~LGICLGmQll 404 (601)
+.+|.|+|||| +|... .+-..+.++..-+.+.++.-||.|=-++
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a 113 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTA 113 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence 78999999998 77643 3455667888778899999999996444
No 185
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=76.91 E-value=3.6 Score=42.30 Aligned_cols=38 Identities=37% Similarity=0.626 Sum_probs=33.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.|+||-|= -|+||=.++|+||.-|..+|.||..|-+|
T Consensus 3 ~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 789999774 58899999999999999999999988665
No 186
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=76.53 E-value=10 Score=38.15 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcccCCC-cchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhcc
Q 007496 284 WTSRAEICDGLHEPVRIAMVGKYTGL-SDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK 361 (601)
Q Consensus 284 w~~l~~~~~~~~~~v~IalVGkY~~l-~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~ 361 (601)
|+.+.+... +...+|+++. +... .+.| ..+.++++..|+.... ..-++. .+. ..+| ++.+.+.
T Consensus 18 ~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~---~~~~~~--~~~---a~~~----~~~~~l~ 82 (217)
T cd03145 18 LQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVE---VLVIDS--REA---ANDP----EVVARLR 82 (217)
T ss_pred HHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeE---EeccCC--hHH---cCCH----HHHHHHH
Confidence 445555543 2457899994 5422 1233 3466777788875322 111111 110 0111 2335688
Q ss_pred CCCEEEECCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007496 362 GADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (601)
Q Consensus 362 ~~DGIlvpGGfG~rg-----~eg~i~aik~are~~iP~LGICLGmQlla 405 (601)
++|+|+++||--.+- ..+...+++.+.+++.|+.|+-.|.-+++
T Consensus 83 ~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 83 DADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred hCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 999999999732211 13566788888889999999999998875
No 187
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=76.23 E-value=5.3 Score=36.34 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
|.++|. +|.||=.+++.++..|..+|.+|-.+-.||
T Consensus 2 i~~~Gk--gG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGK--GGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 677885 899999999999999999999999999999
No 188
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=76.03 E-value=4.6 Score=38.57 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.|+|- +|-||-.++..+...|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 455664 79999999999999999999999999977
No 189
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=74.95 E-value=7.4 Score=36.01 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
-+|+|| .|.||=.+++-+-+.|+.+|++|...|-.+.
T Consensus 2 ~~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 2 MGFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 378998 6699999999999999999999999998876
No 190
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=74.31 E-value=18 Score=36.16 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=44.0
Q ss_pred EEEEEcccCCCcchHH-HHHHHHHHccccc---eeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCC
Q 007496 299 RIAMVGKYTGLSDAYL-SILKALLHASVDL---RKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 372 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~-SIi~aL~~ag~~~---~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGf 372 (601)
|||++-. ...+.|. ++.+.++++.-+. +..+.+...++.. +++...++.+.+ .++|||++.+.
T Consensus 1 ~Ig~i~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~--------~~~~~~~~~~~~~~~~vdgiIi~~~- 69 (272)
T cd06300 1 KIGLSNS--YAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADG--------DVAQQIADIRNLIAQGVDAIIINPA- 69 (272)
T ss_pred CeEEecc--ccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEEeCC-
Confidence 4677632 2334454 5777776665555 5433333333321 111222222222 48999999763
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 373 GNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 373 G~rg~eg~i~aik~are~~iP~LGI 397 (601)
+.. ..-..++.+.+.++|+..+
T Consensus 70 -~~~--~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 70 -SPT--ALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred -Chh--hhHHHHHHHHHCCCeEEEE
Confidence 211 1123456677788998875
No 191
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=74.19 E-value=4.8 Score=38.34 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.3
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
.=.|.||=.+|+.++..|..+|++|-.+..||..+.
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 357899999999999999999999999999996543
No 192
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=74.16 E-value=29 Score=36.66 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
|-|-|+| .=-|.||=.+|+.++..|..+|.+|-.+-.||..+
T Consensus 94 ~vIav~~-~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 94 VVVAVIG-GRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred eEEEEEc-CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4566665 45789999999999999999999999999999865
No 193
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=72.21 E-value=7.1 Score=37.97 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
|.|+| .||-||-..|..|...|+..|.+|..+.+|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 67888 588999999999999999999999999999998755
No 194
>PRK07667 uridine kinase; Provisional
Probab=72.09 E-value=7.4 Score=38.15 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
.|.++|+ ||-||-..|..|...|+..|.+|..+.+|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5778886 788999999999999999999999999999874
No 195
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.89 E-value=5.9 Score=44.30 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=36.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
+.|.++| ..|.||=.+++.++..|+.+|++|..+-.|||-
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4677777 799999999999999999999999999999985
No 196
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=71.77 E-value=7 Score=42.14 Aligned_cols=41 Identities=27% Similarity=0.479 Sum_probs=37.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
|-|.||| -.|.||=.+++.++..|..+|+||-.+-.||+-+
T Consensus 32 ~ii~v~g--kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 32 QIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 6788885 7999999999999999999999999999999964
No 197
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=71.77 E-value=7.6 Score=37.99 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=37.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
||-|.||++ -.|.||=.+++.++..|..+|.+|-.|-.||+-.
T Consensus 17 ~kvI~v~s~-kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 17 IKVLLITSV-KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred CcEEEEecC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 577888754 4688999999999999999999999999999853
No 198
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.75 E-value=5.9 Score=44.26 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHH-HHHCCCeeEEeeeccccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVL-LKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~l-l~~~g~~v~~~k~dpyln 44 (601)
+.|+++| .+|.||..+++.++.. +..+|.+|.++-+|+|-.
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4577887 6999999999999974 478899999999999763
No 199
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.23 E-value=9.1 Score=40.61 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=29.3
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
..+|-|++=||=|+ ++.+++.+...++|+|||=+|.
T Consensus 63 ~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 63 GSADMVISIGGDGT-----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEecCC
Confidence 46899999997542 6778888877799999999886
No 200
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=70.44 E-value=7.4 Score=39.97 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~-~g~~v~~~k~dpyln~ 45 (601)
||.|-|+ | =.|+||=.+|..+|..|.. +|+||-.|-+||-.|.
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 3778888 6 8999999999999999997 6999999999999874
No 201
>CHL00175 minD septum-site determining protein; Validated
Probab=70.03 E-value=8.6 Score=39.62 Aligned_cols=45 Identities=31% Similarity=0.512 Sum_probs=38.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDA 47 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~ 47 (601)
|.|.|++| --|.||=.+|+.++..|..+|++|-.+-+||- -|++.
T Consensus 16 ~vi~v~s~-KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 16 RIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhh
Confidence 56777765 47899999999999999999999999999996 45553
No 202
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=69.48 E-value=8 Score=40.04 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc------cccCCC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP------YLNTDA 47 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp------yln~d~ 47 (601)
||-|.|.| +=-|.||=.++|.++..|+..|.+|..|-+|| .+|+|.
T Consensus 1 M~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 1 MKVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CcEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 78888774 56788999999999999999999999999999 566653
No 203
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=69.01 E-value=8.5 Score=39.63 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=39.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
||-|-|. | =-|+||=.+|..++..|..+|+||-.|-+||=.|.
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 6777777 6 88999999999999999999999999999998874
No 204
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=68.91 E-value=17 Score=37.13 Aligned_cols=80 Identities=26% Similarity=0.323 Sum_probs=47.4
Q ss_pred cCCCcchHHHH---HHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc---hhH
Q 007496 306 YTGLSDAYLSI---LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---VQG 379 (601)
Q Consensus 306 Y~~l~DaY~SI---i~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg---~eg 379 (601)
|....-+..|+ +++|+.-.... ..+.+|++..|..+. | .+.--.+++|||-.-+- ..+
T Consensus 6 Yn~~GvSp~~lkhtv~sLr~~~~p~---y~v~~V~~~~Li~Ep-----------W--~~~T~lLV~pGGaDlpY~~~l~g 69 (253)
T COG4285 6 YNGLGVSPYSLKHTVRSLRLFAPPY---YAVDRVDAQFLIKEP-----------W--EETTLLLVFPGGADLPYVQVLQG 69 (253)
T ss_pred eCCCCCChHHHHHHHHHHHhhccch---heEEEeeeheeecCc-----------c--hhceEEEEecCCCCchHHHHhcc
Confidence 33333344444 45555554443 256778887765422 3 34567799999965542 344
Q ss_pred HHHH-HHHHHHcCCCEEEEehhH
Q 007496 380 KILA-AKYAREHRIPYLGICLGM 401 (601)
Q Consensus 380 ~i~a-ik~are~~iP~LGICLGm 401 (601)
++.+ |+....++--+||||.|-
T Consensus 70 ~g~a~i~~yvk~GG~fLGiCAG~ 92 (253)
T COG4285 70 LGTARIKNYVKEGGNFLGICAGG 92 (253)
T ss_pred hhhhhHHHHHhcCCeEEEEeccc
Confidence 4433 455556678999999984
No 205
>PRK10037 cell division protein; Provisional
Probab=68.25 E-value=7.9 Score=39.36 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=34.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
||. +-...-=-|.||=.+|+.++..|..+|+||-.|-+||=
T Consensus 1 ~~~-iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAI-LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcE-EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 663 33334446789999999999999999999999999994
No 206
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=68.14 E-value=28 Score=32.14 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=33.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|-++++ -+|-||=.+++.++..|..+|.+|..+-.||+
T Consensus 2 i~~~~~-kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSG-KGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 345555 78999999999999999999999999999983
No 207
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=68.00 E-value=11 Score=37.17 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYL 43 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~-~g~~v~~~k~dpyl 43 (601)
+|-|.||| .-+|.||=.+|+.++..|-. .|.||-.|-.||.-
T Consensus 35 ~~vi~v~s-~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTS-SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35566664 45899999999999999975 79999999999975
No 208
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=67.96 E-value=9.2 Score=40.96 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+.|.++| .+|.||=.+++.++.+|+..|.+|..+-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4577787 89999999999999999999999999999985
No 209
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=67.87 E-value=8.9 Score=36.46 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
++|++.| +.|-||+..+..|...|..+|++|..+..
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788888 68999999999999999999999976554
No 210
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=67.36 E-value=10 Score=39.86 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=37.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
||-|-|. | =.|+||=.+++.++..|...|+||-.|-.||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 5555554 3 67899999999999999999999999999998765
No 211
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=67.10 E-value=4.2 Score=41.93 Aligned_cols=90 Identities=26% Similarity=0.421 Sum_probs=51.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeec--ccccCCC--------CCC---CccccceEEEecCCccccCCCCccccc
Q 007496 11 VSGLGKGVTASSIGVLLKACGLRVTCIKID--PYLNTDA--------GTM---SPFEHGEVFVLDDGGEVDLDLGNYERF 77 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d--pyln~d~--------gtm---sp~~hgevfv~~dg~e~dldlg~yerf 77 (601)
+.|++||-++--+..+|+..|.+=.++-+= =+.-=.+ |-- +|-+.-.+.-+.|++=+= =|+||||
T Consensus 110 lggiaKGyavD~~~~~L~~~gi~~~lVn~GGdi~~~G~~~~g~~W~IgI~~P~~~~~~~~~~~l~~~avaT--Sg~y~r~ 187 (254)
T PF02424_consen 110 LGGIAKGYAVDRAAELLREAGITNALVNAGGDIRAIGSKPDGQPWRIGIEDPRDPGRILGVLELSNGAVAT--SGDYERY 187 (254)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTTSCEEEEETTEEEEESBCTTSSBEEEEEEETCTTCCEEEEEECCTSEEEE--EETTCCC
T ss_pred cchhHHHHHHHHHHHHHHHcCCCeEEEeCCCcEEEeccCCCCCeEEEEecccCCCCceeEEEEeCCcEEEe--ccCceee
Confidence 468999999999999999999854443320 0000000 111 222222344455543110 2899999
Q ss_pred cCCCCCCCCcccchHhhHHHHhhhhcCCCC-CCeeE
Q 007496 78 MDIKLTRDNNITTGKIYQSVIDKERKGDYL-GKTVQ 112 (601)
Q Consensus 78 ~~~~l~~~~n~t~gkiy~~vi~ker~g~yl-g~tvq 112 (601)
...+ |+.|.++|+- |.|.-. ....|
T Consensus 188 ~~~~---------g~~~~HIidP-~tG~p~~~~~~s 213 (254)
T PF02424_consen 188 FEID---------GKRYHHIIDP-RTGYPAESGIAS 213 (254)
T ss_dssp CCCT---------SCECES-BET-TTSSB-SSSEEE
T ss_pred EEEC---------CEEeeeeECC-CCCcCccCCcEE
Confidence 9654 8888888877 555544 44444
No 212
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=66.93 E-value=12 Score=36.85 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=33.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
+.|-|+|. ||-||=..+-.|-.+|+.+|++|..||.|.
T Consensus 7 ~ii~ivG~--sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 7 PLLAIAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred eEEEEECC--CCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45667774 999999999999999999999999999753
No 213
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.82 E-value=16 Score=35.68 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=53.2
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHH-HHHhcccCCCCCCCCcEEEEeeCccccccCcch-
Q 007496 92 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWI-ERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP- 158 (601)
Q Consensus 92 kiy~~vi~ker~g~ylg~tvqviph------it-----~~i~~~i-~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~p- 158 (601)
..|...++....-.+.+..++|+.. ++ ....+++ +.+.. ..+||+|+|.+|.- |+-...
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~------~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS------QPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc------CCCCCEEEEecccc--ccccccc
Confidence 5677777655544455666666653 11 2344444 34432 34699999998854 764322
Q ss_pred -----------HHHHHHHHhhHcCCCCEEEEeeeeeeee
Q 007496 159 -----------FIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (601)
Q Consensus 159 -----------f~ea~rq~~~~~g~~n~~~ih~~~vp~~ 186 (601)
|.+.+++|-.+..+.+.-.|..|+-|+-
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~ 131 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPFE 131 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 7778888877776666666666666643
No 214
>PRK13236 nitrogenase reductase; Reviewed
Probab=66.32 E-value=10 Score=39.87 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
+-|-| .| =-|+||=.+|..|+..|..+|+||-.+-.||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 44445 44 77899999999999999999999999999998864
No 215
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=65.66 E-value=12 Score=38.26 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
|-|-|+ | =-|.||=.+++.|+..|..+|+||-.|-.||=.|.
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 677777 6 89999999999999999999999999999995443
No 216
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.34 E-value=11 Score=41.87 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+.|.++|- +|.||=.+++.++..+..+|.+|..+-.|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 56788884 6999999999999999999999999999998
No 217
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.82 E-value=14 Score=39.40 Aligned_cols=36 Identities=42% Similarity=0.645 Sum_probs=29.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++|.|++=||=| -++.+++.+...++|+|||=+|.
T Consensus 71 ~~~D~vi~lGGDG-----T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 71 DGCELVLVLGGDG-----TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred cCCCEEEEEcCCH-----HHHHHHHHhccCCCcEEEEecCC
Confidence 4689999999754 36778888878899999998875
No 218
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=63.69 E-value=10 Score=35.58 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 9 gv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+-=+|.||=.+|+.++..|..+|++|-.+-.||-
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3457899999999999999999999999998885
No 219
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=63.52 E-value=7.1 Score=36.91 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc-----hhHHHHHHHHHHH
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGKILAAKYARE 389 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg-----~eg~i~aik~are 389 (601)
.+.++++..|+++ .+++..+.. ..+..+.+.++|+|++.||--.+- ..++..+++.+..
T Consensus 4 ~~~~~f~~~g~~v------~~l~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEV------DQLDLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EE------EECCCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEE------EEEeccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 4567888888663 233332111 113446678999999999632211 1357788999888
Q ss_pred cCCCEEEEehhHHH
Q 007496 390 HRIPYLGICLGMQV 403 (601)
Q Consensus 390 ~~iP~LGICLGmQl 403 (601)
++.|+.|+-.|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 89999999999855
No 220
>PLN02929 NADH kinase
Probab=63.38 E-value=9.6 Score=40.70 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=44.7
Q ss_pred CcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHH
Q 007496 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAR 388 (601)
Q Consensus 309 l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~ar 388 (601)
++++...+.+.|+..|+++.. +. ..++ . +.+.++|-|++=||=| -++.+++.+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~---v~---r~~~-~--------------~~~~~~Dlvi~lGGDG-----T~L~aa~~~- 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWEC---VL---RNEL-S--------------QPIRDVDLVVAVGGDG-----TLLQASHFL- 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEE---ee---cccc-c--------------cccCCCCEEEEECCcH-----HHHHHHHHc-
Confidence 344556778889999887522 11 1111 0 2356889999999754 266788888
Q ss_pred HcCCCEEEEehh
Q 007496 389 EHRIPYLGICLG 400 (601)
Q Consensus 389 e~~iP~LGICLG 400 (601)
..++|++||=.|
T Consensus 85 ~~~iPvlGIN~G 96 (301)
T PLN02929 85 DDSIPVLGVNSD 96 (301)
T ss_pred CCCCcEEEEECC
Confidence 778999999887
No 221
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=62.90 E-value=18 Score=36.95 Aligned_cols=42 Identities=36% Similarity=0.504 Sum_probs=35.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
|+ |.|+ | =.|.||=.+|+.++..|..+|+||-.+-.||=.|.
T Consensus 1 ~~-i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~ 42 (267)
T cd02032 1 MV-LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred CE-EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 45 4555 4 88999999999999999999999999999995543
No 222
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=62.01 E-value=20 Score=35.68 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=30.7
Q ss_pred HhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007496 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (601)
Q Consensus 358 ~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLG 400 (601)
+.|+++|.||+...+++.-.....++++...+++.+++||.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4589999999999776544455667888888899999999833
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.50 E-value=12 Score=41.71 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~--~~g~~v~~~k~dpy 42 (601)
+.|++.|- +|.||=.+++.|+..+. ..|.+|..+..|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35666665 89999999999998886 67899999999998
No 224
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.28 E-value=19 Score=38.09 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=49.6
Q ss_pred EEEEEcccCCCc--chHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCc
Q 007496 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (601)
Q Consensus 299 ~IalVGkY~~l~--DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg 376 (601)
+|+++.+...-. .....+.++|+..++++.+. -..+..+..... + .+ ...+....+|-|++-||=|
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~----~~~~~~~~~~~~---~-~~-~~~~~~~~~d~vi~~GGDG--- 74 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE----ADTARNIGLTGY---P-AL-TPEEIGARADLAVVLGGDG--- 74 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCcccc---c-cc-ChhHhccCCCEEEEECCcH---
Confidence 599997765422 12346677787777664331 111111100000 0 00 0012224689999999744
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 377 VQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 377 ~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++.+++.+...++|+|||=+|.
T Consensus 75 --t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 75 --TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred --HHHHHHHHhcCCCCCEEEEcCCC
Confidence 35677777666789999998876
No 225
>PRK06696 uridine kinase; Validated
Probab=61.15 E-value=17 Score=36.31 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
.|.|+| .||-||-.+|..|...|...|..|..+-+|=|..-
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 567777 58889999999999999999999999999999864
No 226
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=61.08 E-value=9 Score=39.11 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=37.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
||-|-|. | =.|.||=.+|+.++..|..+| ||-.|-.||=.|.
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADT 43 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCccc
Confidence 6777777 6 899999999999999999999 9999999998654
No 227
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=61.06 E-value=9.3 Score=40.10 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
|||||-|= -|+||=..++|++.-|..-+-+|-.|--||--|+-
T Consensus 20 KwifVGGK--GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGK--GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCc--CCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 99999763 58899999999999999999999999999998873
No 228
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.43 E-value=20 Score=38.06 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.1
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
..+|-+++=||=| -++.+++.+...++|+|||=+|.
T Consensus 67 ~~~D~vi~lGGDG-----T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 67 QYCDLVAVLGGDG-----TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcccCCCEEEEecCC
Confidence 4689999999744 36677887777799999999886
No 229
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.06 E-value=2.1e+02 Score=30.05 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=83.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCCC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~l 82 (601)
.|.+.|- +|.||=.++..+...|..+|.+|..+-.|+|- .| -++++
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r---i~------------------------~~~ql----- 122 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IG------------------------TVQQL----- 122 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC---HH------------------------HHHHH-----
Confidence 5667776 89999999999999999899999999888762 11 01100
Q ss_pred CCCCcccchHhhHHHHhhhhcCCCCCCeeEEcc-cchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 007496 83 TRDNNITTGKIYQSVIDKERKGDYLGKTVQVVP-HITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (601)
Q Consensus 83 ~~~~n~t~gkiy~~vi~ker~g~ylg~tvqvip-hit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (601)
. + .++-+| +.+++ .=.+++.+.|+++++ ..+.|++||...|..-. ...-++
T Consensus 123 ---------------~--~-~~~~~~--~~~~~~~~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~--~~~~l~ 174 (270)
T PRK06731 123 ---------------Q--D-YVKTIG--FEVIAVRDEAAMTRALTYFKE------EARVDYILIDTAGKNYR--ASETVE 174 (270)
T ss_pred ---------------H--H-HhhhcC--ceEEecCCHHHHHHHHHHHHh------cCCCCEEEEECCCCCcC--CHHHHH
Confidence 0 0 111123 23332 224567777777753 34689999999998631 134567
Q ss_pred HHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEE
Q 007496 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (601)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (601)
.++++.....++. +|+ +++++ .|..=.+.-++.+++ +.+|.+|.
T Consensus 175 el~~~~~~~~~~~---~~L----Vl~a~--~~~~d~~~~~~~f~~--~~~~~~I~ 218 (270)
T PRK06731 175 EMIETMGQVEPDY---ICL----TLSAS--MKSKDMIEIITNFKD--IHIDGIVF 218 (270)
T ss_pred HHHHHHhhhCCCe---EEE----EEcCc--cCHHHHHHHHHHhCC--CCCCEEEE
Confidence 7777765554442 333 34331 111123344555554 56677776
No 230
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=58.93 E-value=17 Score=35.90 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=37.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
-|.|+| =-|.||=.+++.++..|..+|+||-.|-.||-.|.=
T Consensus 2 ~iav~g--KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEEC--CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 367774 889999999999999999999999999999998753
No 231
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=58.68 E-value=14 Score=40.78 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (601)
|-|.|+ .-=-|.||=.+|.-++..|..+|+||-+|-+||--|..
T Consensus 122 ~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt 165 (405)
T PRK13869 122 QVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLS 165 (405)
T ss_pred eEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHH
Confidence 444444 22346799999999999999999999999999975543
No 232
>PRK11670 antiporter inner membrane protein; Provisional
Probab=58.46 E-value=17 Score=39.78 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=36.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
|.|-|+.| =-|.||=.+|+.++..|...|+||-.+-.|||.+-
T Consensus 108 ~vIaV~S~-KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps 150 (369)
T PRK11670 108 NIIAVSSG-KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPS 150 (369)
T ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 44455444 46889999999999999999999999999999874
No 233
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.42 E-value=50 Score=28.80 Aligned_cols=80 Identities=18% Similarity=0.055 Sum_probs=46.7
Q ss_pred EEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCC-cccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~-le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
+|++||- ..+....+.+.++..|... .|..... .++.. ......+.++|.||++=++=+-.
T Consensus 1 ~vliVGG---~~~~~~~~~~~~~~~G~~~------~~hg~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH~- 62 (97)
T PF10087_consen 1 SVLIVGG---REDRERRYKRILEKYGGKL------IHHGRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSHN- 62 (97)
T ss_pred CEEEEcC---CcccHHHHHHHHHHcCCEE------EEEecCCCCccch--------hHHHHhcCCCCEEEEEeCCcChH-
Confidence 4788982 2334456677777788764 2331110 11100 01346788999999987654322
Q ss_pred hHHHHHHHHHHHcCCCEEEE
Q 007496 378 QGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGI 397 (601)
-+..+-+.|.+.++|+.=.
T Consensus 63 -~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 63 -AMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred -HHHHHHHHHHHcCCcEEEE
Confidence 2445566788889998643
No 234
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.29 E-value=21 Score=37.42 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=27.5
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHH--cCCCEEEEehhH
Q 007496 362 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 401 (601)
Q Consensus 362 ~~DGIlvpGGfG~rg~eg~i~aik~are--~~iP~LGICLGm 401 (601)
++|.+++=||=| -++.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDG-----T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDG-----TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcH-----HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 569999999744 26677877766 689999998885
No 235
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=56.50 E-value=9.4 Score=37.49 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=21.4
Q ss_pred cCCcchHHHHHHHHHHHHHCC--CeeEEeee
Q 007496 11 VSGLGKGVTASSIGVLLKACG--LRVTCIKI 39 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g--~~v~~~k~ 39 (601)
.-|=|||-|+|++|..|++.| +||.++.|
T Consensus 9 ytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 9 YTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 346799999999999999865 67877765
No 236
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.06 E-value=31 Score=39.90 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHHHHHHhcC--CCCceEEEEEcccCCCc--chHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh
Q 007496 284 WTSRAEICDG--LHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359 (601)
Q Consensus 284 w~~l~~~~~~--~~~~v~IalVGkY~~l~--DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~ 359 (601)
|+++.+.+.. ..+.+||+|+.+...-. +....+.+.|+..++.+.+. ...+..+..... .. .. ....
T Consensus 275 ~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~----~~~~~~~~~~~~-~~---~~-~~~~ 345 (569)
T PRK14076 275 HKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELE----SFLYNKLKNRLN-EE---CN-LIDD 345 (569)
T ss_pred HHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEe----chhhhhhccccc-cc---cc-cccc
Confidence 4455554433 34567899997654221 11235566677777654321 111111110000 00 00 0012
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
+.++|.||+=||=| -++.+++.+...++|+|||=+|.
T Consensus 346 ~~~~dlvi~lGGDG-----T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 346 IEEISHIISIGGDG-----TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ccCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEcCCC
Confidence 34789999999754 36778887777799999998875
No 237
>PRK01184 hypothetical protein; Provisional
Probab=55.91 E-value=14 Score=35.51 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeE
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~ 35 (601)
|+.|++||+.-| ||+.+| ++++..|+.+-
T Consensus 1 ~~~i~l~G~~Gs--GKsT~a----~~~~~~g~~~i 29 (184)
T PRK01184 1 MKIIGVVGMPGS--GKGEFS----KIAREMGIPVV 29 (184)
T ss_pred CcEEEEECCCCC--CHHHHH----HHHHHcCCcEE
Confidence 789999998655 598854 36888887653
No 238
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.85 E-value=57 Score=32.60 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=44.2
Q ss_pred EEEEEcccCCC-cchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCCC
Q 007496 299 RIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (601)
Q Consensus 299 ~IalVGkY~~l-~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG~ 374 (601)
||+++= ... .+.|. ++++.++.+..+.+..+.+. .++.. +++.-.++.+.+ .++|||++.+..
T Consensus 1 ~i~~i~--~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~--~~~~~-------~~~~~~~~i~~l~~~~vdgiii~~~~-- 67 (271)
T cd06312 1 KIAFVT--HGPAGDPFWTVVKNGAEDAAKDLGVDVEYR--GPETF-------DVADMARLIEAAIAAKPDGIVVTIPD-- 67 (271)
T ss_pred CEEEec--CCCCCCcHHHHHHHHHHHHHHHhCCEEEEE--CCCCC-------CHHHHHHHHHHHHHhCCCEEEEeCCC--
Confidence 466662 233 34453 56666666655555544333 22210 111111222222 589999997632
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEe
Q 007496 375 RGVQGKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 375 rg~eg~i~aik~are~~iP~LGIC 398 (601)
. ......++.++++++|+.-+.
T Consensus 68 ~--~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 68 P--DALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred h--HHhHHHHHHHHHCCCeEEEeC
Confidence 1 122345677788899998774
No 239
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=55.69 E-value=14 Score=38.87 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 12 s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
-||||=.++|.+...|..+|.||-.|=+||--
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 38999999999999999999999999999963
No 240
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.34 E-value=22 Score=37.35 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=48.3
Q ss_pred eEEEEEcccCCCc--chHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh-ccCCCEEEECCCCCC
Q 007496 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGN 374 (601)
Q Consensus 298 v~IalVGkY~~l~--DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlvpGGfG~ 374 (601)
|||+++.+...-. .....+.+.|+..++++.+. . ..++.+.... .+. .... ..++|.|++-||=|+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~--~--~~~~~~~~~~------~~~-~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVD--S--ETYEHLPEFS------EED-VLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--c--chhhhcCccc------ccc-cccccccCCCEEEEEeCcHH
Confidence 6899997665321 11235667788887765431 0 0111110000 000 0011 137899999997442
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 375 rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
++.+++ ....++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 456777 666789999998876
No 241
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=55.07 E-value=19 Score=40.33 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
..|+++| .-|.||=.+++-++..|+..|++|..+-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3577887 69999999999999999999999999999986
No 242
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=55.04 E-value=61 Score=32.29 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.5
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+...+ .....++.+++.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 47999988653221 1223467777889998755
No 243
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=53.94 E-value=22 Score=37.59 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=34.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
.|.|. | =-|.||=.+|+.++..|..+|+||-.|-+||=.|
T Consensus 2 vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 2 IIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred EEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCC
Confidence 45666 4 6899999999999999999999999999999554
No 244
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=53.45 E-value=45 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.3
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++++.... ...+.+.+.+.++|++.+
T Consensus 57 ~~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 57 QGVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred cCCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 47999999874321 112567778889999875
No 245
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=53.07 E-value=23 Score=36.32 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
-|.|.| =-|.||=.+|..++..|..+|+||-.|-+||=.|.
T Consensus 2 ~ia~~g--KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYG--KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeC--CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 467774 78999999999999999999999999999998875
No 246
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=52.97 E-value=23 Score=38.47 Aligned_cols=39 Identities=31% Similarity=0.227 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
||.|-|+|. ||-||=.....+-..|+.+|++|..||-|.
T Consensus 205 ~~~~~~~g~--~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVVGY--SGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEecC--CCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 467888884 999999999999999999999999999764
No 247
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=52.65 E-value=21 Score=40.17 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
||.|=|+|= |+-||-....-|=..|+.+||||..||=|.
T Consensus 1 MkVi~IvG~--sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGW--KDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEec--CCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 787778884 999999999999999999999999999654
No 248
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=52.59 E-value=88 Score=29.68 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
--|.||=.+|+.++..| .+|-.+-.||..
T Consensus 8 kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 8 KGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred CCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 36889999999999999 899999999874
No 249
>PLN02727 NAD kinase
Probab=52.50 E-value=25 Score=42.87 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=29.5
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
..+|.||+=||=| -++.+++.....++|+|||=+|.
T Consensus 742 ~~~DLVIvLGGDG-----TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 742 ERVDFVACLGGDG-----VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhcCCCCCEEEEeCCC
Confidence 4689999999754 26778888878899999999885
No 250
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=51.99 E-value=22 Score=36.02 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=30.2
Q ss_pred CccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 007496 9 GVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (601)
Q Consensus 9 gv~s~~gkg~~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (601)
..==|.||..+|.-++..|. .+|+||-.|-+||=-|
T Consensus 9 n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 9 NQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred ecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 33446799999999999999 6779999999999544
No 251
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=51.69 E-value=2.7e+02 Score=28.04 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.6
Q ss_pred EEEEEeCCccCC-cchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 2 KYVLVTGGVVSG-LGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 2 k~i~vtggv~s~-~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
|.+|||...... -|=+..+..+..-|+.+|++|+.+=.++..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 456777655431 345667778889999999999998665543
No 252
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=51.07 E-value=76 Score=31.28 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=55.8
Q ss_pred cchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc---ccc----------C
Q 007496 89 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI---GDI----------E 155 (601)
Q Consensus 89 t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtv---gdi----------e 155 (601)
++|++-.+.++. .|... -..++||-=-+.|+..+..++. .. .|++|+ .|||= .|+ -
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499998888865 57777 7889999999999999999873 33 676665 89982 222 1
Q ss_pred cch-HHHHHHHHhhHc-CCC
Q 007496 156 SMP-FIEALGQFSYRV-GPG 173 (601)
Q Consensus 156 s~p-f~ea~rq~~~~~-g~~ 173 (601)
-+| |-|+||++.++. |..
T Consensus 96 eipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 EIPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred cCCcHHHHHHHhhhhcCCCc
Confidence 245 999999999998 543
No 253
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=45 Score=34.65 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=31.5
Q ss_pred cCCCEEEECCCCCCCc--hhHHHHHHHHHHHcCCCEEEE--ehhHHHHHHHhcccccc
Q 007496 361 KGADGILVPGGFGNRG--VQGKILAAKYAREHRIPYLGI--CLGMQVAVIEFARSVLN 414 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg--~eg~i~aik~are~~iP~LGI--CLGmQllaiefgrnV~g 414 (601)
++.|-|..+-|||--. ....+-+=....-.++|+.|+ |.|| ||.||.+.|
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigH----IEMGR~iTg 122 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGH----IEMGREITG 122 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhh----hhhcceecc
Confidence 4679999998887633 222222222223358999998 7776 666777754
No 254
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=50.85 E-value=19 Score=35.03 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCe----eEEeeecccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLR----VTCIKIDPYL 43 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~----v~~~k~dpyl 43 (601)
|.|+|+ ||-||-.+|..|..+|...|.. +..+-+|-|.
T Consensus 2 IgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 778886 7789999999999999999988 6777777664
No 255
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=50.77 E-value=14 Score=36.63 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 007496 12 SGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (601)
Q Consensus 12 s~~gkg~~~~s~g~ll~~~--g~~v~~~k~ 39 (601)
-|=|||-|+|++|..|++. |+||.++.|
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 4569999999999999985 578888765
No 256
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=50.05 E-value=21 Score=36.56 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=35.5
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGmQllaiefgrnV 412 (601)
.++|+++|+= |+||+.. ++|.. ..+|+.|||----+++...||++
T Consensus 68 ~GvdaiiIaC-f~DPgl~----~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGLA----AARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHHH----HHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 5799999987 8887763 34433 37999999998888888888876
No 257
>PRK15453 phosphoribulokinase; Provisional
Probab=50.04 E-value=21 Score=37.96 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=40.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (601)
..|.|||| ||-||=.+|.++..+|+..|.++..+..|=|=-.|-..|.
T Consensus 6 piI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~ 53 (290)
T PRK15453 6 PIIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMK 53 (290)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHh
Confidence 36889997 8999999999999999999988988888887766655553
No 258
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=49.49 E-value=73 Score=30.85 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=21.8
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+..... .. ++.+.+.++|+..+
T Consensus 54 ~~~d~iii~~~~~~~-----~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 54 RRVDGIILAPSRLDD-----EL-LEELAALGIPVVLV 84 (264)
T ss_pred cCcCEEEEecCCcch-----HH-HHHHHHcCCCEEEe
Confidence 489999998754321 12 67777889998765
No 259
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.16 E-value=41 Score=35.98 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=29.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++|-+++=||=| -++.+++.+...++|+|||=+|.
T Consensus 67 ~~~Dlvi~iGGDG-----TlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 67 SSMKFAIVLGGDG-----TVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred cCcCEEEEEeCcH-----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 4689999999755 36778888777899999998773
No 260
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=48.91 E-value=34 Score=34.91 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007496 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (601)
=-|.||=.+|+.|+..|..+|+||-.|-+||=.|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS 42 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 67899999999999999999999999999996554
No 261
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.67 E-value=27 Score=34.30 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=37.1
Q ss_pred cCCCEEEECCCCCCCc-------------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc
Q 007496 361 KGADGILVPGGFGNRG-------------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFA 409 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg-------------~-eg~i~aik~are~~iP~LGICLGmQllaiefg 409 (601)
..+|++++|||||... + .....+++...+.++|+==||.-=-++..-||
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g 146 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG 146 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC
Confidence 4679999999999742 1 23556677777889999999988877765555
No 262
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=48.65 E-value=30 Score=35.81 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=34.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|+=|.+..+-=.|.||=.+|+.++..|..+|.+|.++-.||=
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 333444445568999999999999999999999999999985
No 263
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=47.83 E-value=78 Score=31.18 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=20.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~L 395 (601)
.++||||+.+...+. ..++.+++.++|+.
T Consensus 54 ~~vdgiIi~~~~~~~------~~~~~l~~~~ipvV 82 (265)
T cd06299 54 QRVDGIIVVPHEQSA------EQLEDLLKRGIPVV 82 (265)
T ss_pred cCCCEEEEcCCCCCh------HHHHHHHhCCCCEE
Confidence 489999998743221 24677778888974
No 264
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=47.76 E-value=22 Score=38.13 Aligned_cols=95 Identities=31% Similarity=0.549 Sum_probs=67.7
Q ss_pred EEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCCCCC
Q 007496 5 LVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTR 84 (601)
Q Consensus 5 ~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~l~~ 84 (601)
=+|| +=|.||-....-+|+.|..+|+||..+-+||= |||-=|-+ ||+==|+-......
T Consensus 55 GITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~~ 112 (323)
T COG1703 55 GITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVDP 112 (323)
T ss_pred EecC--CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCccc------------cccHhhHHhhccCC
Confidence 3555 46889999999999999999999999999994 78776665 78777776655322
Q ss_pred C----CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccc
Q 007496 85 D----NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG 152 (601)
Q Consensus 85 ~----~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvg 152 (601)
+ +..|.| +|| -++.+..+.|.-+- ..++|++||| |||
T Consensus 113 ~vFiRs~~srG--------------~lG-------GlS~at~~~i~~ld-------AaG~DvIIVE---TVG 153 (323)
T COG1703 113 GVFIRSSPSRG--------------TLG-------GLSRATREAIKLLD-------AAGYDVIIVE---TVG 153 (323)
T ss_pred CeEEeecCCCc--------------cch-------hhhHHHHHHHHHHH-------hcCCCEEEEE---ecC
Confidence 2 222222 333 35666666666553 4589999999 555
No 265
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.39 E-value=45 Score=35.39 Aligned_cols=36 Identities=36% Similarity=0.385 Sum_probs=28.8
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++|.+++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 62 ~~~d~vi~lGGDGT-----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 62 QQADLAIVVGGDGN-----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCeEEEEECCC
Confidence 47899999997542 5677777766789999999887
No 266
>PRK06953 short chain dehydrogenase; Provisional
Probab=47.07 E-value=24 Score=34.47 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
||.++||||. ++||.-++. .|...|++|..+-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la~-----~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFVR-----QYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHHH-----HHHhCCCEEEEEECC
Confidence 7899999996 888876554 445679999887443
No 267
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=47.04 E-value=30 Score=33.48 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=30.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
-|++|| .||-||=.+|..+-.-|+++|.+|..+--|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 578888 799999999999999999999988877555
No 268
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.94 E-value=47 Score=34.48 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=44.3
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
|++++.+ .......+..+.+.|...|... .|.+... ....++|.|++=||=|+
T Consensus 1 m~~~~~~-~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFY-REEKEKEAKFLKEKISKEHEVV------EFCEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEe-CccHHHHHHHHHHHHHHcCCee------Eeecccc-----------------cccCCCCEEEEECCcHH---
Confidence 5677774 3333345556677777777542 2332211 11257899999997442
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhH
Q 007496 378 QGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGICLGm 401 (601)
++.+++.+ ++|++||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 45555555 89999998875
No 269
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.89 E-value=46 Score=35.23 Aligned_cols=85 Identities=26% Similarity=0.171 Sum_probs=49.5
Q ss_pred eEEEEEcccCCCcchH---HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCC
Q 007496 298 VRIAMVGKYTGLSDAY---LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (601)
Q Consensus 298 v~IalVGkY~~l~DaY---~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~ 374 (601)
.+|+++.+... ++. ..+.+.|+..++++.+. ...+..+.... +. ..+...++|-+++=||=|
T Consensus 11 ~~i~ii~~~~~--~~~~~~~~i~~~l~~~g~~~~~~----~~~~~~~~~~~-------~~-~~~~~~~~Dlvi~iGGDG- 75 (287)
T PRK14077 11 KKIGLVTRPNV--SLDKEILKLQKILSIYKVEILLE----KESAEILDLPG-------YG-LDELFKISDFLISLGGDG- 75 (287)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHHCCCEEEEe----cchhhhhcccc-------cc-hhhcccCCCEEEEECCCH-
Confidence 36999976542 333 34566677777665331 11111111000 00 012224789999999744
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 375 rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
-++.+++.+...++|+|||=+|.
T Consensus 76 ----T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 76 ----TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred ----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 25778888777899999998886
No 270
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=45.97 E-value=43 Score=30.74 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|.|-|+| ..+|.||-.+|..++..|..+|.+|-.+-+|++
T Consensus 1 k~i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4455553 567999999999999999999999999888874
No 271
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.60 E-value=1e+02 Score=30.65 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. +. +.....++.+++.++|+.-+
T Consensus 56 ~~~dgiIi~~~--~~--~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 56 AKVDLILLNAV--DS--KGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred hCCCEEEEeCC--Ch--hHhHHHHHHHHHCCCeEEEe
Confidence 58999999652 22 11234567777788887665
No 272
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=45.57 E-value=36 Score=31.91 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=29.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
+-|.|+|. |+-||=..+..|-..|+.+|++|..+|=+
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 35778885 89999999999999999999999988754
No 273
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=45.39 E-value=1e+02 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=21.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+... . .....++.+.+.++|+.-+
T Consensus 55 ~~vdgiii~~~~~-~---~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 55 QGVDAIIVVPVDT-A---ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred cCCCEEEEecCch-h---hhHHHHHHHHHCCCeEEEe
Confidence 4899999976321 1 1124566777788998754
No 274
>PRK08267 short chain dehydrogenase; Provisional
Probab=45.28 E-value=24 Score=35.28 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=24.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
||-++||||. +|||+-+ .+.|-.+|++|..+
T Consensus 1 mk~vlItGas-g~iG~~l-----a~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRAT-----ALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHH-----HHHHHHCCCeEEEE
Confidence 7899999987 6777654 45566789998876
No 275
>PRK08727 hypothetical protein; Validated
Probab=44.61 E-value=16 Score=36.98 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~d 63 (601)
.++++|+ ||.||==.+.+++.-+...|++|..+-.+-+...=+..++-++.=.+.|+||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5899998 9999999999999999999999987766543322122333444456888886
No 276
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=44.52 E-value=89 Score=32.07 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=57.3
Q ss_pred ceEEEEEcccCCCcch---HH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCC
Q 007496 297 PVRIAMVGKYTGLSDA---YL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (601)
Q Consensus 297 ~v~IalVGkY~~l~Da---Y~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGf 372 (601)
.-+|+.+ -+-+.... |. -..++|+..|+.+.- +.-..++ + ......|.++|.|.|.||-
T Consensus 32 ~~~i~FI-PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~---L~l~~~~-~------------~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFI-PTASVDSEDDFYVEKVRNALAKLGLEVSE---LHLSKPP-L------------AAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEE-ecCccccchHHHHHHHHHHHHHcCCeeee---eeccCCC-H------------HHHHHhhhhccEEEECCch
Confidence 4589998 35433222 33 467888888887532 1111111 0 1133557789999999972
Q ss_pred CCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007496 373 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVA 404 (601)
Q Consensus 373 G~r-----g~eg~i~aik~are~~iP~LGICLGmQll 404 (601)
=-. ...|....++.+..+++|+.|+-.|--++
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 110 12367788999999999999998776555
No 277
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.35 E-value=46 Score=31.70 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcEEEEeeCcc--ccccCcchHHHHHHHHhhHcCC--CCEEEEeeeeee
Q 007496 119 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 184 (601)
Q Consensus 119 ~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggt--vgdies~pf~ea~rq~~~~~g~--~n~~~ih~~~vp 184 (601)
.++.+++..+. ..+||+|+|.+|+- .......-|.+.+++|-..+.. .+.-.+=+++.|
T Consensus 54 ~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 54 ADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 44556666532 46899999999983 1112234577888888777765 344444445433
No 278
>PRK05693 short chain dehydrogenase; Provisional
Probab=44.34 E-value=24 Score=35.70 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
||-++|||| -||||+.++ ..|..+|++|...-
T Consensus 1 mk~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALA-----DAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 789999998 478887655 45567899887653
No 279
>PRK07102 short chain dehydrogenase; Provisional
Probab=44.02 E-value=24 Score=34.92 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=24.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
||-|+||||- +|||+.++- .|-++|++|..+=.+
T Consensus 1 ~~~vlItGas-~giG~~~a~-----~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 1 MKKILIIGAT-SDIARACAR-----RYAAAGARLYLAARD 34 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHH-----HHHhcCCEEEEEeCC
Confidence 7889999986 788876554 445679988776444
No 280
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.02 E-value=1e+02 Score=30.46 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=45.1
Q ss_pred EEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCCCCc
Q 007496 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 376 (601)
Q Consensus 300 IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG~rg 376 (601)
||++-.. ..+.|. .+.+.++.+.-+.+..+.+. .++. .+++...+..+.+ .++|||++.....+
T Consensus 1 I~vi~~~--~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~--------~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~-- 67 (257)
T PF13407_consen 1 IGVIVPS--MDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQ--------NDPEEQIEQIEQAISQGVDGIIVSPVDPD-- 67 (257)
T ss_dssp EEEEESS--SSSHHHHHHHHHHHHHHHHHTCEEEEE-EEST--------TTHHHHHHHHHHHHHTTESEEEEESSSTT--
T ss_pred cEEEeCC--CCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCC--------CCHHHHHHHHHHHHHhcCCEEEecCCCHH--
Confidence 5666322 233454 46666666666655544333 2322 1222222222222 58999998874332
Q ss_pred hhHHHHHHHHHHHcCCCEEEE
Q 007496 377 VQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 377 ~eg~i~aik~are~~iP~LGI 397 (601)
.....++.+.+.++|+.-+
T Consensus 68 --~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 68 --SLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp --TTHHHHHHHHHTTSEEEEE
T ss_pred --HHHHHHHHHhhcCceEEEE
Confidence 2235678888999999875
No 281
>PRK06179 short chain dehydrogenase; Provisional
Probab=43.37 E-value=26 Score=35.20 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=26.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
|.|+||||- ||||+ ++.+.|..+|++|..+--||
T Consensus 5 ~~vlVtGas-g~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGAS-SGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecCC-CHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 679999985 77775 44566778899999877665
No 282
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=43.35 E-value=43 Score=32.20 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
++|+|+|. .|-||...+..|..-|...|++|...
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 78999995 78899999999999999999998643
No 283
>PRK09701 D-allose transporter subunit; Provisional
Probab=43.22 E-value=1.4e+02 Score=31.02 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=42.5
Q ss_pred eEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCCC
Q 007496 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG~ 374 (601)
-+|+++-.. +.+.|. ++.+.++.+.-+.+..+.+...+..+ +++...++.+.+ .++||||+.+...+
T Consensus 25 ~~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~--------~~~~~~~~i~~l~~~~vDgiIi~~~~~~ 94 (311)
T PRK09701 25 AEYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG--------DFQSQLQLFEDLSNKNYKGIAFAPLSSV 94 (311)
T ss_pred CeEEEEeCC--CCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCChH
Confidence 378888532 344554 56666666554444433222112210 111111111222 47999999874221
Q ss_pred CchhHHHHHHHHHHHcCCCEEEE
Q 007496 375 RGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 375 rg~eg~i~aik~are~~iP~LGI 397 (601)
. ....+..+.+.++|+.-+
T Consensus 95 -~---~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 95 -N---LVMPVARAWKKGIYLVNL 113 (311)
T ss_pred -H---HHHHHHHHHHCCCcEEEe
Confidence 1 123355666788998654
No 284
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.06 E-value=47 Score=32.94 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
|.|++-| .+|.||=.|+|=++..++.+|.+|..+-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5667777 489999999999999999999999999999885
No 285
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.87 E-value=30 Score=32.74 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred hccCCCEEEECCCCCCCchhHHHHHHHHHHH--cCCCEEEEeh
Q 007496 359 LLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 399 (601)
Q Consensus 359 ~L~~~DGIlvpGGfG~rg~eg~i~aik~are--~~iP~LGICL 399 (601)
.+.++|.|++-||-.-|...-..+-+|...| .+.|+.|+|+
T Consensus 82 ~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 82 ELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred ccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 4667999999999777754333334444443 4679999996
No 286
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=42.26 E-value=91 Score=34.85 Aligned_cols=33 Identities=15% Similarity=0.452 Sum_probs=24.5
Q ss_pred CCcEEEEe-eCccccccC-cchHHHHHHHHhhHcC
Q 007496 139 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVG 171 (601)
Q Consensus 139 ~~dv~i~e-~ggtvgdie-s~pf~ea~rq~~~~~g 171 (601)
+.=.+|+| +-|.-|++. +--|++++|++..+.|
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g 252 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG 252 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 34568888 556667764 4559999999999876
No 287
>PRK04148 hypothetical protein; Provisional
Probab=42.12 E-value=29 Score=32.81 Aligned_cols=91 Identities=26% Similarity=0.342 Sum_probs=63.1
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccccCCCCccccccCCCCCCCCcccchH
Q 007496 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNITTGK 92 (601)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~l~~~~n~t~gk 92 (601)
|+|-| .++...|+..|+.|+.+-+||..--++ -+.|--+|.+|--+.|+++ |+= .+ =
T Consensus 24 G~GfG---~~vA~~L~~~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~~~--y~~---a~----------l 80 (134)
T PRK04148 24 GIGFY---FKVAKKLKESGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNLEI--YKN---AK----------L 80 (134)
T ss_pred EecCC---HHHHHHHHHCCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCHHH--Hhc---CC----------E
Confidence 55544 455678889999999999999843223 2346778889888776642 221 11 1
Q ss_pred hhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc
Q 007496 93 IYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 151 (601)
Q Consensus 93 iy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtv 151 (601)
|| -+=| +-|+|.-|.++|+ .-++|++|.=+||-.
T Consensus 81 iy-----------------sirp--p~el~~~~~~la~------~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 81 IY-----------------SIRP--PRDLQPFILELAK------KINVPLIIKPLSGEE 114 (134)
T ss_pred EE-----------------EeCC--CHHHHHHHHHHHH------HcCCCEEEEcCCCCC
Confidence 22 1223 5799999999996 778999999999853
No 288
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=41.94 E-value=37 Score=35.30 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=27.8
Q ss_pred CEEEEEeCCccCCcchHHHHH-HHHHHHHHCCCeeEEee
Q 007496 1 MKYVLVTGGVVSGLGKGVTAS-SIGVLLKACGLRVTCIK 38 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~-s~g~ll~~~g~~v~~~k 38 (601)
||.+|++||+ |-.+..+ .+..-|+.+|+.|+.+-
T Consensus 1 ~~i~~~~g~~----~g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGT----GGHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCcc----HHHHhHHHHHHHHHHhCCCEEEEEe
Confidence 7989999988 4456554 89999999999998874
No 289
>PRK14528 adenylate kinase; Provisional
Probab=41.86 E-value=33 Score=33.39 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll 27 (601)
||-|+|+|+ +|-||+..|.-|+.-+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 788999998 9999999988876543
No 290
>PRK09271 flavodoxin; Provisional
Probab=41.68 E-value=1.3e+02 Score=28.66 Aligned_cols=41 Identities=10% Similarity=-0.151 Sum_probs=20.4
Q ss_pred hccCCCEEEECC---CCCC-Cc-hhHHHHHHHHHHHcCCCEEEEeh
Q 007496 359 LLKGADGILVPG---GFGN-RG-VQGKILAAKYAREHRIPYLGICL 399 (601)
Q Consensus 359 ~L~~~DGIlvpG---GfG~-rg-~eg~i~aik~are~~iP~LGICL 399 (601)
.+.++|+|+|.- |.|. |. +...+..++..+..++++.-+++
T Consensus 48 ~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgs 93 (160)
T PRK09271 48 DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGT 93 (160)
T ss_pred CcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEec
Confidence 346789988876 3343 22 33333334333324455444444
No 291
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.53 E-value=1.5e+02 Score=29.37 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=21.3
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++||||+.+.. . ......++.+++.++|+..+
T Consensus 56 ~~vdgvii~~~~-~---~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 56 RGPDAILLAPTD-A---KALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred hCCCEEEEcCCC-h---hhhHHHHHHHHHCCCCEEEe
Confidence 489999997531 1 11124556666778998765
No 292
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=40.84 E-value=1.6e+02 Score=30.52 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=50.0
Q ss_pred eEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchh-hhHHHHhc-cCCCEEEECCCCCC
Q 007496 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDA-YKAAWKLL-KGADGILVPGGFGN 374 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~-y~~a~~~L-~~~DGIlvpGGfG~ 374 (601)
.+|+++ +..+.+.|. .+.+.++.++-+........-.+++. +++. -..+.+.+ .++|||+|.+.
T Consensus 34 ~~i~~~--~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~--------d~~~Q~~~i~~~ia~~~daIiv~~~--- 100 (322)
T COG1879 34 KTIGVV--VPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQN--------DVAKQIAQIEDLIAQGVDAIIINPV--- 100 (322)
T ss_pred ceEEEE--eccCCChHHHHHHHHHHHHHHHcCCcEEEEeccccc--------ChHHHHHHHHHHHHcCCCEEEEcCC---
Confidence 678988 334555665 56677777766665421222222211 1110 11122223 79999999872
Q ss_pred CchhHHHHHHHHHHHcCCCEEEE
Q 007496 375 RGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 375 rg~eg~i~aik~are~~iP~LGI 397 (601)
.......+++.|.+.+||+.-+
T Consensus 101 -d~~~~~~~v~~a~~aGIpVv~~ 122 (322)
T COG1879 101 -DPDALTPAVKKAKAAGIPVVTV 122 (322)
T ss_pred -ChhhhHHHHHHHHHCCCcEEEE
Confidence 2345667899999999998765
No 293
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=40.81 E-value=20 Score=38.98 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=48.4
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-----C-----CCCCCcccc-c---eEEEecCCccccCCCCcccc
Q 007496 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-----D-----AGTMSPFEH-G---EVFVLDDGGEVDLDLGNYER 76 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~-----d-----~gtmsp~~h-g---evfv~~dg~e~dldlg~yer 76 (601)
+.|++||-++--+..+|+..|.+=.+|-+=-=+-+ | -|-=+|+.. + .++-+.|++=+ ==|+|||
T Consensus 183 LggIaKGyavD~a~~~L~~~Gv~~~lV~~GGdi~~~G~~~~g~~W~VgI~~P~~~~~~~~~~~~l~~~ava--TSG~Yer 260 (350)
T PRK10461 183 LSTVGEGYAADHLARLMEQEGISRYLVSVGGALSSRGMNGEGQPWRVAIQKPTDKENAVQAVVDINGHGIS--TSGSYRN 260 (350)
T ss_pred cchhHHHHHHHHHHHHHHHCCCCEEEEEcCCcEEEECCCCCCCCCEEEEcCCCCCCCCceEEEEeCCCEEE--ecCccee
Confidence 57999999999999999999986555544111110 0 122244321 1 23344454311 1589999
Q ss_pred ccCCCCCCCCcccchHhhHHHHhhh
Q 007496 77 FMDIKLTRDNNITTGKIYQSVIDKE 101 (601)
Q Consensus 77 f~~~~l~~~~n~t~gkiy~~vi~ke 101 (601)
|...+ ||-|.++|+--
T Consensus 261 ~~~~~---------g~ry~HIidP~ 276 (350)
T PRK10461 261 YYELD---------GKRLSHVIDPQ 276 (350)
T ss_pred EEEeC---------CeEEEEeecCC
Confidence 97543 77788887764
No 294
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.60 E-value=43 Score=37.69 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|.|-||| +=||..|++=|..+|++.|+++.+
T Consensus 122 ~~I~VTG----TnGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAITG----TNGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEEC----CCcHHHHHHHHHHHHHHcCCCEEE
Confidence 4688888 469999999999999999999887
No 295
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.46 E-value=1.4e+02 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=21.1
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. +.. .....++.+++.++|+.-+
T Consensus 55 ~~~dgiii~~~--~~~--~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 55 QKPDIIISIPV--DPV--STAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred hCCCEEEEcCC--Cch--hhhHHHHHHHHcCCcEEEe
Confidence 58999999652 211 1124567777889998643
No 296
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=40.15 E-value=29 Score=38.22 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=30.4
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeee-cccccCC
Q 007496 13 GLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNTD 46 (601)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k~-dpyln~d 46 (601)
|.||=.+|+.++..|..+|+||-.|-+ ||=-|.-
T Consensus 117 GVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt 151 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS 151 (387)
T ss_pred CCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc
Confidence 569999999999999999999999996 9976643
No 297
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.11 E-value=1.5e+02 Score=29.25 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=21.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.++ +.. .....++.+.+.++|+..+
T Consensus 54 ~~vdgii~~~~--~~~--~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHG--RAE--VLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecC--Chh--hhHHHHHHHHHcCCCEEEe
Confidence 48999999763 221 1223466777788997654
No 298
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=40.05 E-value=52 Score=37.66 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=28.3
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++|.||.=||=|+ ++.+++.+....+|+|||=+|.
T Consensus 261 ~~~DlVIsiGGDGT-----lL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 261 TKVDLVITLGGDGT-----VLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 47899999997552 6677787777789999998663
No 299
>PRK03846 adenylylsulfate kinase; Provisional
Probab=40.01 E-value=44 Score=32.67 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
+.|.++|. ||-||=.+|..|..+|..+|..+-.+.-|++-
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 56888886 79999999999999998888877766656543
No 300
>PRK08177 short chain dehydrogenase; Provisional
Probab=39.77 E-value=43 Score=32.77 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
||-++||||. +|||+. +.+.|..+|++|..+-.+
T Consensus 1 ~k~vlItG~s-g~iG~~-----la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGAS-RGLGLG-----LVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHhCCCEEEEEeCC
Confidence 7889999994 566654 556677889998876544
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.63 E-value=46 Score=36.78 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=33.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH----CCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA----CGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~----~g~~v~~~k~dpy 42 (601)
+.|++.|-. |.||=.|++.++..|+. .|.+|..+-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356666765 99999999999998873 5899999999988
No 302
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=39.57 E-value=47 Score=34.04 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|-|.||++ -.|.||-.+|..++..|...|.||-.|-.|+-
T Consensus 104 ~vi~vts~-~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 104 KALAVVSA-KSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 45666654 68999999999999999999999999999864
No 303
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=39.40 E-value=1.7e+02 Score=28.40 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCCCCchhHHHHHHHHHHH
Q 007496 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGVQGKILAAKYARE 389 (601)
Q Consensus 312 aY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG~rg~eg~i~aik~are 389 (601)
.|..+.+.++.+..+.++++.+.+.+. ++....++.+.+ .++|||++.+... ...-..++++++
T Consensus 13 ~~~~~~~~~~~~a~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~vdgvi~~~~~~----~~~~~~~~~l~~ 78 (267)
T cd01536 13 FWQAMNKGAEAAAKELGVELIVLDAQN----------DVSKQIQQIEDLIAQGVDGIIISPVDS----AALTPALKKANA 78 (267)
T ss_pred HHHHHHHHHHHHHHhcCceEEEECCCC----------CHHHHHHHHHHHHHcCCCEEEEeCCCc----hhHHHHHHHHHH
Confidence 445577666666555555443333321 111222222322 4899999866321 111124566667
Q ss_pred cCCCEEEE
Q 007496 390 HRIPYLGI 397 (601)
Q Consensus 390 ~~iP~LGI 397 (601)
.++|+..+
T Consensus 79 ~~ip~V~~ 86 (267)
T cd01536 79 AGIPVVTV 86 (267)
T ss_pred CCCcEEEe
Confidence 77777554
No 304
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.17 E-value=40 Score=34.44 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.++|||+ ||||+-++- .|. .|.+|...=.|
T Consensus 3 k~~lItGa--~gIG~~la~-----~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIAR-----RVG-AGKKVLLADYN 33 (275)
T ss_pred CEEEEECC--ChHHHHHHH-----HHh-CCCEEEEEeCC
Confidence 68899997 899987754 343 69999886443
No 305
>PRK05642 DNA replication initiation factor; Validated
Probab=39.14 E-value=22 Score=36.08 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=46.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg 64 (601)
.+++.|. +|.||==.+.+++.-+..+|.+|..+..+=+.+-.+..+..++...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 4677886 79999999999999888899999888776655544444556666778888874
No 306
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=39.00 E-value=29 Score=31.44 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=49.6
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----
Q 007496 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (601)
Q Consensus 87 n~t~gkiy~~vi~ker~g~ylg~tvqviph-----it~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~---- 157 (601)
+.+++.-|...+.++ .+..+.|... -+..+..++.+...- + ....||++||++|+ .|+-..
T Consensus 12 ~~~~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~-~--~~~~~d~vvi~~G~--ND~~~~~~~~ 81 (179)
T PF13472_consen 12 GAPNNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVLR-F--KDPKPDLVVISFGT--NDVLNGDEND 81 (179)
T ss_dssp TTSSCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCHH-H--CGTTCSEEEEE--H--HHHCTCTTCH
T ss_pred CCCCCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHhh-h--ccCCCCEEEEEccc--cccccccccc
Confidence 334557788888885 4444444422 122222223321100 0 25689999999995 555442
Q ss_pred ----hHHHHHHHHhhHcCCCCEEEEeeeeeeeecC
Q 007496 158 ----PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV 188 (601)
Q Consensus 158 ----pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~ 188 (601)
-|.++++++...+.+.. -.+.+++.|+...
T Consensus 82 ~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~ 115 (179)
T PF13472_consen 82 TSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPD 115 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSS
T ss_pred ccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccc
Confidence 27888999888886666 5555555566544
No 307
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=38.98 E-value=1.3e+02 Score=29.99 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET----GWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc----cchHHHHHHHHCCCCEEEE
Confidence 57999999763321 1123456777788998765
No 308
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=38.88 E-value=48 Score=33.25 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=27.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
-|..|| +||-||-.+|..+-..|.++|++|..
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 467788 89999999999999999999997543
No 309
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=38.85 E-value=1.6e+02 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=22.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGIC 398 (601)
.++|||++.++.. .. ...++.++++++|++-+.
T Consensus 54 ~~vdgiii~~~~~--~~---~~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 54 QRVDGLILTVADA--AT---SPALDLLDAERVPYVLAY 86 (266)
T ss_pred cCCCEEEEecCCC--Cc---hHHHHHHhhCCCCEEEEe
Confidence 4799999966432 11 125677778899987663
No 310
>PRK06924 short chain dehydrogenase; Provisional
Probab=38.56 E-value=47 Score=32.87 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=23.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
||.|+||||- +|||+.+ .+-|-++|++|..+
T Consensus 1 ~k~vlItGas-ggiG~~i-----a~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAI-----ANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHH-----HHHHHhcCCEEEEE
Confidence 7999999975 6777655 45566789988765
No 311
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=38.55 E-value=1.1e+02 Score=30.75 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=47.3
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
-+|.+|| .-..+...|.++-+..|+... .-.|+.-. |..... +....+|.|+|.+ +.
T Consensus 62 ~~ILfVg---tk~~~~~~V~~~A~~~g~~~v---~~RWlgGt-LTN~~~-----------~~~~~Pdlliv~d----p~- 118 (196)
T TIGR01012 62 EDILVVS---ARIYGQKPVLKFAKVTGARAI---AGRFTPGT-FTNPMQ-----------KAFREPEVVVVTD----PR- 118 (196)
T ss_pred CeEEEEe---cCHHHHHHHHHHHHHhCCceE---CCeeCCCC-CCCccc-----------cccCCCCEEEEEC----Cc-
Confidence 3799997 222244455666566665542 23687643 222110 2246789999875 22
Q ss_pred hHHHHHHHHHHHcCCCEEEEe
Q 007496 378 QGKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGIC 398 (601)
....|+++|..-+||+.|||
T Consensus 119 -~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 119 -ADHQALKEASEVGIPIVALC 138 (196)
T ss_pred -cccHHHHHHHHcCCCEEEEe
Confidence 23468999999999999998
No 312
>PRK07890 short chain dehydrogenase; Provisional
Probab=38.35 E-value=37 Score=33.68 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=23.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
|.|||||| -+|||+- +...|-++|++|.+.-.
T Consensus 6 k~vlItGa-~~~IG~~-----la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGV-GPGLGRT-----LAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECC-CCcHHHH-----HHHHHHHcCCEEEEEeC
Confidence 78999998 5677764 45566688998887744
No 313
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=38.34 E-value=29 Score=36.21 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=16.3
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 13 GLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
||||-.|+|-+..-|...|.||-.+=+||
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDP 39 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDP 39 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCC
Confidence 45555555555555555555555555555
No 314
>PRK06101 short chain dehydrogenase; Provisional
Probab=38.30 E-value=34 Score=33.90 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=25.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
||-++||||- +|||+.++ +.|.++|++|...=-
T Consensus 1 ~~~vlItGas-~giG~~la-----~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQLA-----LDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHHH-----HHHHhCCCEEEEEEC
Confidence 6889999995 88887554 556678999887633
No 315
>PRK07933 thymidylate kinase; Validated
Probab=38.08 E-value=57 Score=32.64 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
+||.+-| +.|-||-..+..|...|+++|++|..++.-
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4788887 578899999999999999999999999874
No 316
>PRK06851 hypothetical protein; Provisional
Probab=38.05 E-value=53 Score=36.12 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=33.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee--ecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK--IDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k--~dp 41 (601)
|.+++||| +|.||-.+...|+..|..+|+.|..+. .||
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 56899998 799999999999999999999998874 455
No 317
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.74 E-value=1.5e+02 Score=30.01 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+...+. ....++.+++.++|+..+
T Consensus 54 ~~vdgiii~~~~~~~----~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 54 KGVDVLVIAPVDGEA----LASAVEKAADAGIPVIAY 86 (288)
T ss_pred cCCCEEEEecCChhh----HHHHHHHHHHCCCCEEEE
Confidence 489999997632221 234567777889998765
No 318
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=37.71 E-value=85 Score=30.54 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=43.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCCCCCCccccce
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDAGTMSPFEHGE 57 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~gtmsp~~hge 57 (601)
||.+=|+| .|+-||=...-.|=+.|+.+||+|..||-++= +.+|.--=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 45566676 57888999999999999999999999998765 366666556665553
No 319
>PRK05439 pantothenate kinase; Provisional
Probab=37.59 E-value=52 Score=35.32 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=35.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeecccccC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPYLNT 45 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~--g~~v~~~k~dpyln~ 45 (601)
.|.|+|+ +|-||=.+|..|-.+|+.. |.+|..+-+|-|+.-
T Consensus 88 iIgIaG~--~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 88 IIGIAGS--VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 5789998 4778999999999999874 789999999999864
No 320
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=37.30 E-value=1.7e+02 Score=28.22 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=20.8
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+.... . . ..++.+.++++|++.+
T Consensus 54 ~~~d~ii~~~~~~~--~--~-~~~~~l~~~~ip~v~~ 85 (264)
T cd01537 54 RGVDGIIIAPSDLT--A--P-TIVKLARKAGIPVVLV 85 (264)
T ss_pred cCCCEEEEecCCCc--c--h-hHHHHhhhcCCCEEEe
Confidence 47999999763221 1 1 1466677788898764
No 321
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=37.07 E-value=48 Score=34.75 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
+|+|.|.==-|.||=.+|.-++.-|...|+||-.+-+|-|
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555555556889999999999999999999999999986
No 322
>PRK05854 short chain dehydrogenase; Provisional
Probab=37.05 E-value=34 Score=35.85 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||- ||||+.++ +.|..+|++|.+.
T Consensus 15 k~~lITGas-~GIG~~~a-----~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGAS-DGLGLGLA-----RRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 689999995 89998665 4456788888754
No 323
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=37.03 E-value=39 Score=31.03 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCE
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPY 394 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~ 394 (601)
.+.+.|+..|+++... .+..-+.+++. +...+.++.+|-|+.+||-|--..+-..++++.+.+..+|+
T Consensus 22 ~l~~~l~~~G~~~~~~-~~v~Dd~~~I~-----------~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~~~ 89 (135)
T smart00852 22 ALAELLTELGIEVTRY-VIVPDDKEAIK-----------EALREALERADLVITTGGTGPGPDDVTPEAVAEALGKELPG 89 (135)
T ss_pred HHHHHHHHCCCeEEEE-EEeCCCHHHHH-----------HHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcCCC
Confidence 5677788899875432 12211111111 11223346799999999865322233445555554334554
Q ss_pred E
Q 007496 395 L 395 (601)
Q Consensus 395 L 395 (601)
.
T Consensus 90 ~ 90 (135)
T smart00852 90 F 90 (135)
T ss_pred h
Confidence 3
No 324
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=36.97 E-value=40 Score=33.29 Aligned_cols=30 Identities=40% Similarity=0.578 Sum_probs=21.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
||-|+||||- +|||+.++ +.|-.+|++|..
T Consensus 2 ~k~ilItGas-~giG~~la-----~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRATA-----VLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHHH-----HHHHHCCCEEEE
Confidence 5789999985 88887644 456667877643
No 325
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=36.92 E-value=50 Score=33.56 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=31.5
Q ss_pred CEEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 1 MKYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 1 ~k~i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
|| |+||+| .+|.-.-|-+.++|...|..+|++|+.+-
T Consensus 1 ~~-vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 1 MK-ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred CE-EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 44 678888 68888999999999999999999999873
No 326
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.88 E-value=1.5e+02 Score=26.37 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=27.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLG 400 (601)
..-|-+|+-.-.|. ....+++++.|++++.|+++||-.
T Consensus 46 ~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 46 TPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44466666553443 455788999999999999999853
No 327
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.74 E-value=1.7e+02 Score=28.97 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=20.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+... + .....++.+.+.++|+.-+
T Consensus 54 ~~~dgiii~~~~~-~---~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 54 KGVSGIIISPTNS-S---AAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred cCCCEEEEcCCch-h---hhHHHHHHHHHCCCCEEEE
Confidence 5899999865321 1 1224566677788998643
No 328
>PRK13973 thymidylate kinase; Provisional
Probab=36.66 E-value=67 Score=31.94 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
+||++-| +.|-||...+..|-.-|++.|++|....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7999988 5899999999999999999999986554
No 329
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.64 E-value=32 Score=34.57 Aligned_cols=29 Identities=45% Similarity=0.786 Sum_probs=21.9
Q ss_pred ccCCcchHHHHHHHHHHHHHC--CCeeEEee
Q 007496 10 VVSGLGKGVTASSIGVLLKAC--GLRVTCIK 38 (601)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~--g~~v~~~k 38 (601)
|..|=|||-|.|.+|+.|++. |++|-++.
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 445779999999999999985 45665543
No 330
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=36.52 E-value=90 Score=29.82 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 13 GLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
+=||..|++=|..+|+..|..|..+-
T Consensus 4 T~GKTTTt~ml~~iL~~~g~~~~~~~ 29 (188)
T PF08245_consen 4 TNGKTTTTRMLAHILSAAGKVVGTIG 29 (188)
T ss_dssp SSSHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccc
Confidence 45999999999999999999888876
No 331
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=36.40 E-value=26 Score=34.49 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=40.8
Q ss_pred HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccC-CCEEEECCCCCCCchhHHHHHHHHHHHcCC
Q 007496 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG-ADGILVPGGFGNRGVQGKILAAKYAREHRI 392 (601)
Q Consensus 314 ~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~-~DGIlvpGGfG~rg~eg~i~aik~are~~i 392 (601)
.-+.+.|+.+|..+.. ..+.--+.+.+. ....+.... +|.||..||-|-...+-..+|++...+..+
T Consensus 30 ~~l~~~L~~ag~~~~~-~~iV~D~~~~I~-----------~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 30 PLLVELLEEAGHNVAA-YTIVPDDKEQIR-----------ATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hHHHHHHHHcCCccce-EEEeCCCHHHHH-----------HHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 3577889999988722 112111111111 011122233 899999998665444445678888889889
Q ss_pred CEE
Q 007496 393 PYL 395 (601)
Q Consensus 393 P~L 395 (601)
|=|
T Consensus 98 pGF 100 (169)
T COG0521 98 PGF 100 (169)
T ss_pred CcH
Confidence 933
No 332
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.16 E-value=89 Score=33.22 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=27.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
+++|-|++-||=|+ .+.+++.+...++|+|||=+|.
T Consensus 61 ~~~d~vi~~GGDGt-----~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 61 EVCDLVIVVGGDGS-----LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred cCCCEEEEEeCcHH-----HHHHHHHhcCCCCCEEEEeCCc
Confidence 46899999997442 4566777767789999999875
No 333
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.51 E-value=1.9e+02 Score=29.82 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. ++. ....+++.+.+.++|+.-+
T Consensus 56 ~~vdgiii~~~--~~~--~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 56 KGVDLLAVNLV--DPT--AAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred cCCCEEEEecC--chh--hHHHHHHHHHHCCCCEEEe
Confidence 58999999652 221 1235667777889997654
No 334
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=35.49 E-value=2.1e+02 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=20.3
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+...+ ... .++.+++.++|+.-+
T Consensus 56 ~~vdgiI~~~~~~~----~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 56 WGADAILLGAVSPD----GLN-EILQQVAASIPVIAL 87 (268)
T ss_pred cCCCEEEEcCCChh----hHH-HHHHHHHCCCCEEEe
Confidence 58999999763211 111 356677789997644
No 335
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.37 E-value=31 Score=36.12 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=28.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++|.|++=||=| -++.+++.+...++|+|||=+|.
T Consensus 32 ~~~D~vi~iGGDG-----T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG-----FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH-----HHHHHHHHhcCCCCcEEEEecCC
Confidence 4679999999744 26778888777899999999884
No 336
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=35.21 E-value=59 Score=31.54 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=31.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
|.|+|+ ||-||=.+|..|-.+| .+.+|..+-.|.|..
T Consensus 2 igi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 2 IGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 778998 9999999999998888 566888888888763
No 337
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.03 E-value=1.8e+02 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=20.1
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~L 395 (601)
.++|||++.+.. . +.....++.+.+.++|+.
T Consensus 54 ~~~Dgiii~~~~--~--~~~~~~i~~~~~~~iPvV 84 (282)
T cd06318 54 RGVNVLIINPVD--P--EGLVPAVAAAKAAGVPVV 84 (282)
T ss_pred cCCCEEEEecCC--c--cchHHHHHHHHHCCCCEE
Confidence 589999997632 1 122345677777888864
No 338
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=34.67 E-value=67 Score=30.81 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=28.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
+.|.++|. ||-||..+|..|...|+..|..+..+--|
T Consensus 19 ~~i~i~G~--~GsGKstla~~l~~~l~~~~~~~~~l~~d 55 (184)
T TIGR00455 19 VVIWLTGL--SGSGKSTIANALEKKLESKGYRVYVLDGD 55 (184)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEECCh
Confidence 56788884 69999999999999999888766544333
No 339
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=34.46 E-value=2.1e+02 Score=28.07 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=36.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCCccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (601)
|.++| ..|-||=.....+-..+. .+.+|..++-|++.++|+-.+.... -+|..+.+|..+
T Consensus 25 i~~~G--~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gcic 84 (207)
T TIGR00073 25 LNFMS--SPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKEC 84 (207)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCcc
Confidence 44444 345566444455444333 4589999999998888877665322 256666666544
No 340
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=34.46 E-value=31 Score=35.78 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=29.7
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
+.++|.|++=||=| .++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDG-----TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDG-----FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCH-----HHHHHHHHhcCCCCeEEEEeCCC
Confidence 45789999999744 36778888777889999999885
No 341
>PRK12742 oxidoreductase; Provisional
Probab=34.37 E-value=47 Score=32.45 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|.|+|||| -+|||+-++ +.|.++|.+|..
T Consensus 7 k~vlItGa-sggIG~~~a-----~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVLGG-SRGIGAAIV-----RRFVTDGANVRF 35 (237)
T ss_pred CEEEEECC-CChHHHHHH-----HHHHHCCCEEEE
Confidence 78999988 678887654 667778888764
No 342
>PRK08303 short chain dehydrogenase; Provisional
Probab=34.33 E-value=40 Score=35.39 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||- ||||+.++ ..|...|.+|.+.
T Consensus 9 k~~lITGgs-~GIG~aia-----~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIA-----VELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEE
Confidence 789999986 88887654 5566789988764
No 343
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=34.18 E-value=3e+02 Score=29.09 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=45.9
Q ss_pred CceEEEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCC
Q 007496 296 EPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 372 (601)
Q Consensus 296 ~~v~IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGf 372 (601)
+..+||++-. . +.+.| .++++.++++..+.+..+.+ ..+.. +++.-.++.+.+ .++|||++.+..
T Consensus 24 ~~~~Ig~i~~-~-~~~~f~~~~~~gi~~~a~~~g~~l~i--~~~~~--------~~~~~~~~i~~l~~~~vDGiIi~~~~ 91 (330)
T PRK10355 24 KEVKIGMAID-D-LRLERWQKDRDIFVKKAESLGAKVFV--QSANG--------NEETQMSQIENMINRGVDVLVIIPYN 91 (330)
T ss_pred CCceEEEEec-C-CCchHHHHHHHHHHHHHHHcCCEEEE--ECCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5678999852 2 32233 45666666655554443332 33321 111112223333 489999997621
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 373 GNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 373 G~rg~eg~i~aik~are~~iP~LGI 397 (601)
. ......++.+.+.++|+.-+
T Consensus 92 ~----~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 92 G----QVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred h----hhHHHHHHHHHHCCCeEEEE
Confidence 1 11234567777888998766
No 344
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=34.13 E-value=51 Score=32.69 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=21.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (601)
|+-|.+|||.-| || |+++.+|++.|+.|
T Consensus 1 m~~igitG~igs--GK----st~~~~l~~~g~~v 28 (200)
T PRK14734 1 MLRIGLTGGIGS--GK----STVADLLSSEGFLI 28 (200)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 788999999655 67 47778888888864
No 345
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=34.10 E-value=1.6e+02 Score=30.81 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=49.2
Q ss_pred cccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHH
Q 007496 304 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 383 (601)
Q Consensus 304 GkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~a 383 (601)
|||. +..-+.++++.+|+++ +.+.+..++..+-. ....|+.+..-+-.++|+=.|-+..+..+..
T Consensus 17 gky~----s~~~~~~ai~aSg~~i-vTva~rR~~~~~~~----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~ 81 (248)
T cd04728 17 GKYP----SPAIMKEAIEASGAEI-VTVALRRVNIGDPG----------GESFLDLLDKSGYTLLPNTAGCRTAEEAVRT 81 (248)
T ss_pred CCCC----CHHHHHHHHHHhCCCE-EEEEEEecccCCCC----------cchHHhhccccCCEECCCCCCCCCHHHHHHH
Confidence 5676 5567789999999997 45677777642111 1235666665556788997777777777777
Q ss_pred HHHHHH
Q 007496 384 AKYARE 389 (601)
Q Consensus 384 ik~are 389 (601)
++.|||
T Consensus 82 a~lare 87 (248)
T cd04728 82 ARLARE 87 (248)
T ss_pred HHHHHH
Confidence 777776
No 346
>PRK06398 aldose dehydrogenase; Validated
Probab=34.09 E-value=43 Score=33.75 Aligned_cols=30 Identities=43% Similarity=0.589 Sum_probs=23.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||+-++ ..|..+|++|...
T Consensus 7 k~vlItGa-s~gIG~~ia-----~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGG-SQGIGKAVV-----NRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECC-CchHHHHHH-----HHHHHCCCeEEEE
Confidence 78999998 478887644 6777889998765
No 347
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=34.02 E-value=1.4e+02 Score=33.54 Aligned_cols=93 Identities=27% Similarity=0.504 Sum_probs=69.1
Q ss_pred CccccCCCCccccccCCCCCCC---------------CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHH
Q 007496 64 GGEVDLDLGNYERFMDIKLTRD---------------NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERV 128 (601)
Q Consensus 64 g~e~dldlg~yerf~~~~l~~~---------------~n~t~gkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~ 128 (601)
-.|+-|||-|+=||=-.++.++ .----|+|-+..|+|||.+- .|--+||+-.
T Consensus 119 ~veVPlDlDHFG~yGpMRfPkeIt~C~G~CY~~GpPf~gCPR~RIHkRLidKEk~~~-------------~e~eeWikLs 185 (505)
T PF10113_consen 119 NVEVPLDLDHFGKYGPMRFPKEITHCGGDCYNEGPPFKGCPRGRIHKRLIDKEKEYL-------------EEFEEWIKLS 185 (505)
T ss_pred hcCCCcchhhhcccCCccCChHHhCCchhhhccCCCCCCCchHHHHHHHHHHHHhhh-------------hhHHHHHHHh
Confidence 4678899999999987777664 22345889999999999864 4778999988
Q ss_pred hcccCCCCCCCCcEEEEeeCccccccCcchHHHHH--HHHhhHcCCCCEEEEee
Q 007496 129 AMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEAL--GQFSYRVGPGNFCLIHV 180 (601)
Q Consensus 129 ~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ea~--rq~~~~~g~~n~~~ih~ 180 (601)
+. .-|=++|..| |+--..|.=||. .++..+.|+.==..+||
T Consensus 186 ss---------V~VNl~~eQg--~e~HaApldE~~~Va~~Akk~gkGveaI~~v 228 (505)
T PF10113_consen 186 SS---------VCVNLTEEQG--GEEHAAPLDEMEEVAELAKKYGKGVEAIMHV 228 (505)
T ss_pred hh---------heEEeeeccC--CcccCCCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 74 2455677777 666678877764 57778888876666665
No 348
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=33.88 E-value=65 Score=33.99 Aligned_cols=92 Identities=28% Similarity=0.357 Sum_probs=64.1
Q ss_pred CccccCCCCccccccCCCCCCCCcccchHh--hHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhccc-C----CCC
Q 007496 64 GGEVDLDLGNYERFMDIKLTRDNNITTGKI--YQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIP-V----DGK 136 (601)
Q Consensus 64 g~e~dldlg~yerf~~~~l~~~~n~t~gki--y~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~~-~----d~~ 136 (601)
|.+++| |.--|.|=|.-+|+|..+++|+. -.+.-..+|+|+ +.++++|.++..- | + ++.
T Consensus 51 gv~V~l-l~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE------------~~~~~~~~~~lgi-~i~~~~~~~~ 116 (267)
T COG1834 51 GVEVHL-LPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE------------EEAIKETLESLGI-PIYPRVEAGV 116 (267)
T ss_pred CCEEEE-cCcccCCCcceEeccceeEecccEEEeccCChhhccC------------HHHHHHHHHHcCC-cccccccCCC
Confidence 444444 44667888999999999999864 345557899998 7899999999873 3 2 222
Q ss_pred CCC-CcEEEEeeCccc--cccCcchHHHHHHHHhhHcC
Q 007496 137 EGP-VDVCVIELGGTI--GDIESMPFIEALGQFSYRVG 171 (601)
Q Consensus 137 ~~~-~dv~i~e~ggtv--gdies~pf~ea~rq~~~~~g 171 (601)
.++ =|+++.+ |.|| |.= .--=+|+++||+.-++
T Consensus 117 ~eG~GD~l~~~-~~~v~iG~s-~RTn~egi~~l~~~L~ 152 (267)
T COG1834 117 FEGAGDVLMDG-GDTVYIGYS-FRTNLEGIEQLQAWLE 152 (267)
T ss_pred ccccccEEEeC-CcEEEEEec-cccchHHHHHHHHHhc
Confidence 333 5888887 7776 221 1223588999998887
No 349
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.88 E-value=2.6e+02 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.6
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+...+ -..++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 54 RRPAGLILTGLEHT------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhcCCCEEEE
Confidence 48999999764322 12455566678998865
No 350
>PRK05480 uridine/cytidine kinase; Provisional
Probab=33.80 E-value=73 Score=31.22 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=30.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
..|.|+| .||-||=.++..|..+| .+.+|..+-.|.|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 3678888 68999999999999988 35577777777775
No 351
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=33.43 E-value=1.7e+02 Score=30.86 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=50.5
Q ss_pred cccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHH
Q 007496 304 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 383 (601)
Q Consensus 304 GkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~a 383 (601)
|||. ++.-+.++|+.+|+++ +.+-+..++......+ ...|+.+..-.-.++|+=.|-+..+..+..
T Consensus 24 gky~----s~~~~~~ai~aSg~ev-vTvalRR~~~~~~~~~---------~~~l~~i~~~~~~~LPNTaGc~tA~EAv~~ 89 (267)
T CHL00162 24 GKYK----SLKDAIQSIEASGCEI-VTVAIRRLNNNLLNDN---------SNLLNGLDWNKLWLLPNTAGCQTAEEAIRM 89 (267)
T ss_pred CCCC----CHHHHHHHHHHhCCcE-EEEEEEEeccCcCCCc---------chHHHhhchhccEECCcCcCCCCHHHHHHH
Confidence 5676 6667889999999997 4567777774211110 125677765556889998888888888888
Q ss_pred HHHHHH
Q 007496 384 AKYARE 389 (601)
Q Consensus 384 ik~are 389 (601)
++.+||
T Consensus 90 A~laRe 95 (267)
T CHL00162 90 AFLGRE 95 (267)
T ss_pred HHHHHH
Confidence 888887
No 352
>PLN02422 dephospho-CoA kinase
Probab=33.22 E-value=52 Score=33.79 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=22.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (601)
||.|.||||.-| ||. ++..+|+..|+.|
T Consensus 1 M~~igltG~igs--GKs----tv~~~l~~~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIAS--GKS----TVSNLFKSSGIPV 28 (232)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 789999999765 564 6667788889876
No 353
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=52 Score=33.42 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=29.1
Q ss_pred cCCCEEEECCCCCCC-ch-hHHHHHHHHHHHcCCCEEEEeh
Q 007496 361 KGADGILVPGGFGNR-GV-QGKILAAKYAREHRIPYLGICL 399 (601)
Q Consensus 361 ~~~DGIlvpGGfG~r-g~-eg~i~aik~are~~iP~LGICL 399 (601)
.+.|.|.++=|||.- |. -|+.-|--.|...++|++|||-
T Consensus 57 ~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 57 QDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 477999999999983 43 2444444467778999999995
No 354
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=33.10 E-value=1e+02 Score=33.27 Aligned_cols=104 Identities=23% Similarity=0.240 Sum_probs=61.2
Q ss_pred cccCCccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcC
Q 007496 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN 271 (601)
Q Consensus 192 ~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~ 271 (601)
.|=---.-.++.|.+.| +|+||+|....-.. ..+|-|..+. .||+.-|=..- +=+ |.
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~egaa---~~~a~~~~~~--pvINaGDG~~q-HPT-----Q~---------- 142 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEGAA---RLLAEFSGVN--PVINAGDGSHQ-HPT-----QA---------- 142 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCccccHH---HHHHHhcCCC--ceEECCCCCCC-Ccc-----HH----------
Confidence 44445667889998888 99999998754333 3444444443 37776554442 111 11
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHHHHHcccccee
Q 007496 272 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (601)
Q Consensus 272 l~~~~~~~~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~v 329 (601)
.|+-|+ +.+..- .-+..+||++||-- ..-.-.|.+++|...|+++..
T Consensus 143 --------LLDl~T-I~~~~G-~~~gl~iaivGDlk-hsRva~S~~~~L~~~ga~v~l 189 (316)
T COG0540 143 --------LLDLYT-IREEFG-RLDGLKIAIVGDLK-HSRVAHSNIQALKRFGAEVYL 189 (316)
T ss_pred --------HHHHHH-HHHHhC-CcCCcEEEEEcccc-chHHHHHHHHHHHHcCCEEEE
Confidence 111111 111111 13568999999654 223557999999999976544
No 355
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.90 E-value=2.6e+02 Score=27.53 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=20.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. ..... ...++.+++.++|+.-+
T Consensus 54 ~~vdgiii~~~-~~~~~---~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 54 KKVDAIVLSPV-DSKGI---RAAIAKAKKAGIPVITV 86 (267)
T ss_pred cCCCEEEEcCC-Chhhh---HHHHHHHHHCCCCEEEE
Confidence 58999999652 11111 23456677778998765
No 356
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=32.66 E-value=2.9e+02 Score=28.05 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=42.9
Q ss_pred ceEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCC
Q 007496 297 PVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFG 373 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG 373 (601)
+-+|+++- ..+.+.|. .+++.++.+..+.+..+.+ .++. .+++.-....+.+ .++|||++.+.
T Consensus 26 ~~~I~vi~--~~~~~~f~~~~~~~i~~~~~~~G~~~~~--~~~~--------~d~~~~~~~~~~l~~~~~dgiii~~~-- 91 (295)
T PRK10653 26 KDTIALVV--STLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQ--------NNPAKELANVQDLTVRGTKILLINPT-- 91 (295)
T ss_pred CCeEEEEe--cCCCChHHHHHHHHHHHHHHHcCCeEEE--ecCC--------CCHHHHHHHHHHHHHcCCCEEEEcCC--
Confidence 45788773 23444443 5555555555554444333 2221 0111112222222 47999999752
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEE
Q 007496 374 NRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 374 ~rg~eg~i~aik~are~~iP~LGI 397 (601)
+.. .....++.+.+.++|+.-+
T Consensus 92 ~~~--~~~~~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 92 DSD--AVGNAVKMANQANIPVITL 113 (295)
T ss_pred ChH--HHHHHHHHHHHCCCCEEEE
Confidence 211 1124566777778897765
No 357
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=32.56 E-value=2.2e+02 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=20.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+.... ...++.+.+.++|++.+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 54 RGVDGLALIGLDHS------PALLDLLARRGVPYVAT 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhCCCCEEEE
Confidence 36999998753221 13456677788998765
No 358
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=32.49 E-value=58 Score=28.69 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.8
Q ss_pred cCCcchHHHHHHHHHHHHHC-CCeeEEeeeccccc
Q 007496 11 VSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYLN 44 (601)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~-g~~v~~~k~dpyln 44 (601)
=.|.||=.++..++..|.+. |.+|-.+-+||.-.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~ 42 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG 42 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC
Confidence 36899999999999999998 99999999999843
No 359
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=32.40 E-value=2.1e+02 Score=29.21 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=20.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. . .......++.+.+.++|+.-+
T Consensus 55 ~~~DgiIi~~~-~---~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 55 QGVDAIAVVPN-D---PDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred cCCCEEEEecC-C---HHHHHHHHHHHHHCCCeEEEE
Confidence 47999999752 1 222334566677778887543
No 360
>PRK07035 short chain dehydrogenase; Provisional
Probab=32.16 E-value=49 Score=32.82 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-++||||- |||| +++.+.|..+|++|..+
T Consensus 9 k~vlItGas-~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGAS-RGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCC-cHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999886 6666 46667777889988765
No 361
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.05 E-value=54 Score=32.68 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=24.9
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 2 k~i~vtggv-~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
|-|+||||. .||||+. +.+.|..+|++|...=
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEEc
Confidence 689999998 5889976 4566677898887663
No 362
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.02 E-value=47 Score=33.30 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||+.++ ..|-..|++|...
T Consensus 9 k~~lItGa-s~gIG~aia-----~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMA-----IGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHCCCEEEEe
Confidence 78999998 478887654 5566789988653
No 363
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.60 E-value=1.9e+02 Score=30.26 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=50.0
Q ss_pred cccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHH
Q 007496 304 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 383 (601)
Q Consensus 304 GkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~a 383 (601)
|||. ++.-+.++|+.+|+++ +.|.+..++..+- ....|+.+..-.--++|+=.|-+..+..+..
T Consensus 18 gky~----s~~~~~~ai~asg~~i-vTvalrR~~~~~~-----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~ 81 (250)
T PRK00208 18 GKYP----SPQVMQEAIEASGAEI-VTVALRRVNLGQG-----------GDNLLDLLPPLGVTLLPNTAGCRTAEEAVRT 81 (250)
T ss_pred CCCC----CHHHHHHHHHHhCCCe-EEEEEEeecCCCC-----------cchHHhhccccCCEECCCCCCCCCHHHHHHH
Confidence 5776 5667789999999997 4567777775420 1235676765555788997777777777788
Q ss_pred HHHHHH
Q 007496 384 AKYARE 389 (601)
Q Consensus 384 ik~are 389 (601)
++-|||
T Consensus 82 a~lare 87 (250)
T PRK00208 82 ARLARE 87 (250)
T ss_pred HHHHHH
Confidence 887877
No 364
>PRK09072 short chain dehydrogenase; Provisional
Probab=31.51 E-value=51 Score=33.03 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.|+||||. +|||+.+ .+.|.++|++|..+-.+
T Consensus 6 ~~vlItG~s-~~iG~~i-----a~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGAS-GGIGQAL-----AEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEEECC
Confidence 579999987 8888654 45667789998876543
No 365
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=31.47 E-value=2.2e+02 Score=28.96 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.8
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+- + .+.....++.+++.++|+.-+
T Consensus 55 ~~vdgiIi~~~--~--~~~~~~~l~~~~~~giPvV~~ 87 (302)
T TIGR02637 55 QKVDAIAISAN--D--PDALVPALKKAMKRGIKVVTW 87 (302)
T ss_pred cCCCEEEEeCC--C--hHHHHHHHHHHHHCCCEEEEe
Confidence 58999999752 2 233345677788888998754
No 366
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.35 E-value=3.6e+02 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=25.7
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007496 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICL 399 (601)
+..-|.+|+-.-.|.. +..+.+++.+++++.|+++|+-
T Consensus 58 ~~~~~~~i~iS~~g~~--~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 58 LTPGDVVIAISFSGET--KETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred CCCCCEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEcC
Confidence 3444555544434443 4578889999999999999864
No 367
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.35 E-value=3.4e+02 Score=28.47 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007496 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 363 ~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGIC 398 (601)
+|.|+|.. |.. .-.|++.|+.-+||+.++|
T Consensus 157 Pd~l~ViD----p~~--e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 157 PDVLFVID----PRK--EKIAVKEANKLGIPVVALV 186 (252)
T ss_pred CCEEEEeC----CcH--hHHHHHHHHHcCCCEEEEe
Confidence 66666654 222 3468999999999999998
No 368
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.04 E-value=1.3e+02 Score=31.53 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 362 ~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
++|.++.=||=|+ ++.+++ ....|+|||=+|.
T Consensus 52 ~~D~vi~lGGDGT-----~L~a~~---~~~~PilGIN~G~ 83 (271)
T PRK01185 52 NADVIITIGGDGT-----ILRTLQ---RAKGPILGINMGG 83 (271)
T ss_pred CCCEEEEEcCcHH-----HHHHHH---HcCCCEEEEECCC
Confidence 7899999998553 344444 3457999998874
No 369
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.03 E-value=68 Score=28.11 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=24.3
Q ss_pred hhhHHHHhcc--CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007496 352 AYKAAWKLLK--GADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (601)
Q Consensus 352 ~y~~a~~~L~--~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~L 395 (601)
.|.+.++.+. ++|.|+|+... ......++.+.+.++|+|
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~-----~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPP-----SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSG-----GGHHHHHHHHHHTTSEEE
T ss_pred chhHHHHHHHhhcCCEEEEecCC-----cchHHHHHHHHHcCCEEE
Confidence 3444555564 79999998843 223456666666666554
No 370
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=30.92 E-value=88 Score=29.92 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=38.8
Q ss_pred EEEECCCCCCCch---hHH-HHHHHHHHHcCCCEEEEehh--------HHHHHHHhccccccccCCCCCcc
Q 007496 365 GILVPGGFGNRGV---QGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTEF 423 (601)
Q Consensus 365 GIlvpGGfG~rg~---eg~-i~aik~are~~iP~LGICLG--------mQllaiefgrnV~gl~da~S~Ef 423 (601)
-||++=|....+. ... ..+++.+++.+++++.|+.| |+-++-.-|++.+.+.++++.+|
T Consensus 102 ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~ 172 (178)
T cd01451 102 IVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAI 172 (178)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHH
Confidence 5677777544332 222 56678888999999999987 46666666666666666555444
No 371
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.82 E-value=52 Score=33.52 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
+|.|+|||| -+|||+.+ .+.|..+|++|...--+
T Consensus 4 ~k~vlItGa-sggiG~~l-----a~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGC-SSGIGAYC-----ARALQSDGWRVFATCRK 37 (277)
T ss_pred CCEEEEeCC-CcHHHHHH-----HHHHHHCCCEEEEEECC
Confidence 378999998 47888654 56677889998876443
No 372
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=30.80 E-value=68 Score=34.99 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=32.0
Q ss_pred CCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 8 GGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 8 ggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
..-=-|.||=.+|..++..|..+|+||-.|-+||--|
T Consensus 110 ~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 110 TNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred EccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 3344588999999999999999999999999999543
No 373
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=30.77 E-value=93 Score=25.24 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=23.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
|+++|. +|-||...+..+...| .|.++..+.-
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 678886 5667988888888777 5777776653
No 374
>PRK12829 short chain dehydrogenase; Provisional
Probab=30.75 E-value=58 Score=32.34 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.++||||- ++|| +++...|.++|++|..+-.|
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 679999995 5554 67788888999998876533
No 375
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=30.74 E-value=57 Score=36.00 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (601)
|+.|.||||.-| || |+++.+|+..|+.|
T Consensus 1 m~~IgltG~igs--GK----Stv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GK----STVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 789999999766 56 68888999888875
No 376
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=30.72 E-value=2.5e+02 Score=27.62 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=19.9
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+..-+. . .++.+++.++|+.-+
T Consensus 54 ~~vdgiii~~~~~~~----~--~~~~~~~~~ipvV~~ 84 (264)
T cd06274 54 RQVDALIVAGSLPPD----D--PYYLCQKAGLPVVAL 84 (264)
T ss_pred cCCCEEEEcCCCCch----H--HHHHHHhcCCCEEEe
Confidence 589999998743211 1 155667778887554
No 377
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=30.63 E-value=81 Score=34.22 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=37.4
Q ss_pred ccCCCEEEECCCCCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007496 360 LKGADGILVPGGFGNRGV---QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~---eg~i~aik~are~~iP~LGICLGmQllai 406 (601)
...+|-|++.+|.+.... .....+++.+...+.++-|||.|-=+|+-
T Consensus 74 ~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~ 123 (328)
T COG4977 74 APPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAE 123 (328)
T ss_pred cCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHH
Confidence 345888888888776532 44788899988899999999999998873
No 378
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=30.57 E-value=1e+02 Score=32.06 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCCCCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh
Q 007496 280 LLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359 (601)
Q Consensus 280 ~l~~w~~l~~~~~~~~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~ 359 (601)
.+.++-++..++... .-+|+++ |.....+.....+.++.+.-..++++....+++.+ ....+.+.
T Consensus 116 ~~~~~l~l~~~l~P~--~k~igvl--~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~-----------~~~~~~~~ 180 (294)
T PF04392_consen 116 PIEKQLELIKKLFPD--AKRIGVL--YDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSE-----------DLEQALEA 180 (294)
T ss_dssp -HHHHHHHHHHHSTT----EEEEE--EETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGG-----------GHHHHHHH
T ss_pred CHHHHHHHHHHhCCC--CCEEEEE--ecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHh-----------HHHHHHHH
Confidence 344555666655422 2368776 33222112233444444433334444444554321 11122233
Q ss_pred c-cCCCEEEECCCCCCCch-hHHHHHHHHHHHcCCCEEEEeh
Q 007496 360 L-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICL 399 (601)
Q Consensus 360 L-~~~DGIlvpGGfG~rg~-eg~i~aik~are~~iP~LGICL 399 (601)
+ .+.|+++++... .. ...-..++.+.+.++|++|..-
T Consensus 181 l~~~~da~~~~~~~---~~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 181 LAEKVDALYLLPDN---LVDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp HCTT-SEEEE-S-H---HHHHTHHHHHHHCCCTT--EEESSH
T ss_pred hhccCCEEEEECCc---chHhHHHHHHHHHHhcCCCEEECCH
Confidence 3 688999998632 22 1222245566678999999763
No 379
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.38 E-value=54 Score=33.22 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||- ||||+-+ ...|-++|++|...
T Consensus 9 k~~lItGas-~gIG~ai-----a~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASS-KGIGFGV-----ARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 7888754 45577789988664
No 380
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=30.34 E-value=2.4e+02 Score=30.83 Aligned_cols=148 Identities=19% Similarity=0.221 Sum_probs=72.5
Q ss_pred CCCCc--ccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHHHHHHHhcCC-CCceEEEEEcccCCCcchHHHHHHHHHH
Q 007496 246 DVPNI--WHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGL-HEPVRIAMVGKYTGLSDAYLSILKALLH 322 (601)
Q Consensus 246 dvdti--y~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~~l~~~~~~~-~~~v~IalVGkY~~l~DaY~SIi~aL~~ 322 (601)
++||. +++-..|.+.|.+-.+-+.+ +.++|.+++.++... ...+.| -+| ..+....-+++|..
T Consensus 52 nMdtv~~~~mA~~la~~g~~~~iHk~~---------~~e~~~~~v~~~~~~~~~~~~v-svG----~~~~d~er~~~L~~ 117 (343)
T TIGR01305 52 NMDTVGTFEMAAALSQHSIFTAIHKHY---------SVDEWKAFATNSSPDCLQNVAV-SSG----SSDNDLEKMTSILE 117 (343)
T ss_pred CCCcccCHHHHHHHHHCCCeEEEeeCC---------CHHHHHHHHHhhcccccceEEE-Eec----cCHHHHHHHHHHHh
Confidence 45543 34445555555554443323 356788888776543 222333 222 44456666777777
Q ss_pred cc--ccceeEEE------------EEeecCC----CcccccccCCchhhhHHHHhc-cCCCEEEECCCCCC----C----
Q 007496 323 AS--VDLRKKLV------------IDWIPAC----DLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGN----R---- 375 (601)
Q Consensus 323 ag--~~~~vkv~------------i~wi~s~----~le~~~~~~~p~~y~~a~~~L-~~~DGIlvpGGfG~----r---- 375 (601)
++ .+.-+ ++ +.|+... .+-..|+. + .+.+.+.+ .++|+|.|+=|||. |
T Consensus 118 a~~~~d~iv-iD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~-T---~e~a~~Li~aGAD~ikVgiGpGSicttR~~~G 192 (343)
T TIGR01305 118 AVPQLKFIC-LDVANGYSEHFVEFVKLVREAFPEHTIMAGNVV-T---GEMVEELILSGADIVKVGIGPGSVCTTRTKTG 192 (343)
T ss_pred cCCCCCEEE-EECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc-C---HHHHHHHHHcCCCEEEEcccCCCcccCceeCC
Confidence 75 33211 11 1122211 00011111 1 22233333 59999999866665 2
Q ss_pred ----chhHHHHHHHHHHHcCCCEEE---E-ehhHHHHHHHhcccc
Q 007496 376 ----GVQGKILAAKYAREHRIPYLG---I-CLGMQVAVIEFARSV 412 (601)
Q Consensus 376 ----g~eg~i~aik~are~~iP~LG---I-CLGmQllaiefgrnV 412 (601)
...-..++.+.++..++|++. | +-|.-+-++++|++.
T Consensus 193 vg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~ 237 (343)
T TIGR01305 193 VGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADF 237 (343)
T ss_pred CCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCE
Confidence 122233444445555788773 3 446666677766553
No 381
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=30.33 E-value=47 Score=36.04 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHH
Q 007496 310 SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389 (601)
Q Consensus 310 ~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are 389 (601)
+++-.-+.+.|..+|++..+ +..+++. +.+..+|.||=.||-|+ ++.|+...+.
T Consensus 74 kn~~~~~~~~l~k~gieskl------v~R~~ls---------------q~i~waD~VisvGGDGT-----fL~Aasrv~~ 127 (395)
T KOG4180|consen 74 KNAIKFCQEELSKAGIESKL------VSRNDLS---------------QPIRWADMVISVGGDGT-----FLLAASRVID 127 (395)
T ss_pred HHHHHHHHHHHhhCCcceee------eehhhcc---------------CcCchhhEEEEecCccc-----eeehhhhhhc
Confidence 34455678899999998543 2222222 34778899999998664 3445555778
Q ss_pred cCCCEEEE
Q 007496 390 HRIPYLGI 397 (601)
Q Consensus 390 ~~iP~LGI 397 (601)
.++|++||
T Consensus 128 ~~~PViGv 135 (395)
T KOG4180|consen 128 DSKPVIGV 135 (395)
T ss_pred cCCceeee
Confidence 89999998
No 382
>PRK12828 short chain dehydrogenase; Provisional
Probab=30.32 E-value=64 Score=31.27 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=26.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
|-|+||||- ++|| .++.+.|.++|++|..+--||
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCCh
Confidence 679999986 6666 566677888899988776654
No 383
>PRK00698 tmk thymidylate kinase; Validated
Probab=30.11 E-value=90 Score=29.99 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
++|+|.| ++|-||...+..+...|...|+.|...
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 7999998 588899999999999998888665543
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.96 E-value=74 Score=36.87 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~--g~~v~~~k~dpy 42 (601)
+.|.++|. +|.||=.+++.|+..+..+ |.+|..+-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 35667775 7999999999999887665 579999999988
No 385
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=29.95 E-value=70 Score=27.07 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEE-EecCCccccCCC
Q 007496 17 GVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF-VLDDGGEVDLDL 71 (601)
Q Consensus 17 g~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevf-v~~dg~e~dldl 71 (601)
.+..+.+=..|+..||+|..+|+|- |.+ =||. ...||..+++.+
T Consensus 28 ~~~~~~~~~~l~~~G~~v~~ve~~~----~g~-------yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 28 WLSIEQAVAKLEAQGYQVREVEFDD----DGC-------YEVEARDKDGKKVEVYV 72 (83)
T ss_pred cCCHHHHHHHHHhcCCceEEEEEcC----CCE-------EEEEEEECCCCEEEEEE
Confidence 3456667778899999999999941 111 2788 777888877754
No 386
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=29.79 E-value=54 Score=32.94 Aligned_cols=29 Identities=24% Similarity=0.649 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|-++||||- +|||+.++-. |-..|.+|..
T Consensus 9 k~vlItGas-~gIG~~ia~~-----l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGT-RGIGKAIVYE-----FAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCC-chHHHHHHHH-----HHHCCCEEEE
Confidence 789999886 8999876644 5567887754
No 387
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.61 E-value=65 Score=30.45 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll 27 (601)
++.|+|+|+ +|-||...|..|..-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468999998 9999999998887643
No 388
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=29.52 E-value=55 Score=36.03 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.4
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeee-cccccC
Q 007496 12 SGLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNT 45 (601)
Q Consensus 12 s~~gkg~~~~s~g~ll~~~g~~v~~~k~-dpyln~ 45 (601)
-|.||=.+|+.++..|..+|+||-.|-+ ||--|.
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3569999999999999999999999995 997664
No 389
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=29.49 E-value=46 Score=34.82 Aligned_cols=37 Identities=41% Similarity=0.520 Sum_probs=27.0
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
..++|.|++-||=| -++.+++.+...++|+|||=+|.
T Consensus 74 ~~~~D~ii~lGGDG-----T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG-----TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHH-----HHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCH-----HHHHHHHHhccCCCcEEeecCCC
Confidence 47999999999733 25566776666689999997663
No 390
>PRK00889 adenylylsulfate kinase; Provisional
Probab=29.44 E-value=1e+02 Score=29.26 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
+.|+++| .+|-||=.+|..+...|+..|.+|..+-.|.
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4566666 6899999999999999999998887775553
No 391
>PRK06197 short chain dehydrogenase; Provisional
Probab=29.41 E-value=55 Score=33.87 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.|+||||- +|||+.++ +.|..+|++|...
T Consensus 17 k~vlItGas-~gIG~~~a-----~~l~~~G~~vi~~ 46 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETA-----AALAAKGAHVVLA 46 (306)
T ss_pred CEEEEcCCC-CcHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 88888664 4456678877554
No 392
>PRK07024 short chain dehydrogenase; Provisional
Probab=29.41 E-value=56 Score=32.69 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
+|-|+|||| -+|||+.++ ..|..+|++|..+-.
T Consensus 2 ~~~vlItGa-s~gIG~~la-----~~l~~~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALA-----REYARQGATLGLVAR 34 (257)
T ss_pred CCEEEEEcC-CcHHHHHHH-----HHHHHCCCEEEEEeC
Confidence 467999998 578887665 446667998876543
No 393
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=29.38 E-value=1.8e+02 Score=32.47 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=22.4
Q ss_pred eEEEEEcccCCC--cc-hH-HHHHHHHHHccccceeEE
Q 007496 298 VRIAMVGKYTGL--SD-AY-LSILKALLHASVDLRKKL 331 (601)
Q Consensus 298 v~IalVGkY~~l--~D-aY-~SIi~aL~~ag~~~~vkv 331 (601)
+||.|+|.|+.. .| |- .+++++|+...-.+.+.|
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v 38 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDV 38 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEE
Confidence 578899877632 22 22 388888888876665543
No 394
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=29.37 E-value=65 Score=35.75 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=32.0
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 2 k~i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
|-|+|||| .+|--.-|.+..++...|..+|.+|+.+-
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 57899999 67777778888899999999999999864
No 395
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.23 E-value=70 Score=32.49 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=26.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
|+|||| .|-+-+.+..-|.++|+.|..+.-.+
T Consensus 3 ILVtG~------tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG------AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC------cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999998 56777899999999999988776433
No 396
>PRK11519 tyrosine kinase; Provisional
Probab=29.12 E-value=87 Score=37.28 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|.|.||+. .+|-||-.+|+.++..|...|.||-.|-.|+.
T Consensus 527 kvi~vts~-~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMTGV-SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 56777764 67999999999999999999999999999986
No 397
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.09 E-value=1e+02 Score=34.13 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=42.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC-C-CCccccceEEEecCCccccCCCCc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG-T-MSPFEHGEVFVLDDGGEVDLDLGN 73 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~g-t-msp~~hgevfv~~dg~e~dldlg~ 73 (601)
|.|-||| +-||-.|++=|+.+|+..|+++..-. |+-.. + +.+..-.+++|++=+ |-+||+-|
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~t~ 178 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDLAP 178 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccccc
Confidence 5678888 57999999999999999999875432 22211 1 112123489999987 44666654
No 398
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.06 E-value=1.1e+02 Score=32.12 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=25.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHc-CCCEEEEeh-h
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 400 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~-~iP~LGICL-G 400 (601)
.++|.+++=||=|+ ++.+++.+... ++|++||=+ |
T Consensus 38 ~~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 38 KNANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CCccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 35689999997442 56667665443 789999988 6
No 399
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=29.02 E-value=91 Score=32.74 Aligned_cols=36 Identities=44% Similarity=0.546 Sum_probs=28.5
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
+.+|.|++-||=| -++.+++++...++|++||=+|+
T Consensus 54 ~~~d~ivvlGGDG-----tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 54 EKADLIVVLGGDG-----TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred cCceEEEEeCCcH-----HHHHHHHHhccCCCCEEEEeCCC
Confidence 5788888888644 36777888887889999999983
No 400
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.02 E-value=62 Score=31.62 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=21.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|.|+||||- ++||. .+.+.|.+.|++|..
T Consensus 6 ~~vlItGa~-g~iG~-----~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 6 KKVAIIGVS-EGLGY-----AVAYFALKEGAQVCI 34 (238)
T ss_pred cEEEEECCC-chHHH-----HHHHHHHHCCCEEEE
Confidence 689999995 66664 555677788988765
No 401
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=28.81 E-value=2e+02 Score=32.55 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=96.2
Q ss_pred cCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCCCCCcccccHHHHhcchhhhhhhhcCCCCCCCchhhHHHH
Q 007496 206 GQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWT 285 (601)
Q Consensus 206 s~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~dvdtiy~vpl~L~~qg~~~~i~~~l~l~~~~~~~~l~~w~ 285 (601)
.-|.....-++|-+.-+..... -.||-+..++=.|+ .++. .|-..+.+--.|+.+.++..+.. .+....|.
T Consensus 99 dpgy~~~lp~aR~Dvf~~~~~~---~kF~E~N~Dgssgm--~~~~-~l~~~~~~~~~~~~f~~~~~v~~---~~~~~~~v 169 (445)
T PF14403_consen 99 DPGYDSPLPIARLDVFLTEDGS---FKFCEFNADGSSGM--NEDD-ELARIFLELPAMQEFAERYRVEP---LPLFQSWV 169 (445)
T ss_pred CCCCCCcCcceeeeEEEcCCCc---eEEEEecCCCcccc--chhH-HHHHHHHhhHHHHHHHhhcCccC---cchHHHHH
Confidence 3455555566676655554322 56788888877777 5566 67888888888888888877752 33455663
Q ss_pred H-HHHHh---cCCCCceEEEEEcccCCCc--chHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHh
Q 007496 286 S-RAEIC---DGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359 (601)
Q Consensus 286 ~-l~~~~---~~~~~~v~IalVGkY~~l~--DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~ 359 (601)
+ +...+ ....+..+|||| +|.... +-+.-..+.++..|+++.+- +. ..
T Consensus 170 d~~l~~y~~~~~~~~~P~IAIv-Df~~~~~~~Ef~~f~~~f~~~G~~~vI~------d~-------------------~~ 223 (445)
T PF14403_consen 170 DALLDIYRTFGGRVEKPNIAIV-DFLEYPTLSEFEVFQRLFEEHGYDCVIC------DP-------------------RD 223 (445)
T ss_pred HHHHHHHHHhcCcCCCCcEEEE-ecccCCccchHHHHHHHHHHcCCceEec------Ch-------------------HH
Confidence 3 23332 334556899999 476542 33446778899999998652 22 34
Q ss_pred ccCCCEEEECCCCCC----Cc---------hhHHHHHHHHHHHcCCCEEEE
Q 007496 360 LKGADGILVPGGFGN----RG---------VQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 360 L~~~DGIlvpGGfG~----rg---------~eg~i~aik~are~~iP~LGI 397 (601)
|.--||.|..||+-- |. ..+.-..++..+...++++|=
T Consensus 224 L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vgs 274 (445)
T PF14403_consen 224 LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVGS 274 (445)
T ss_pred ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEecc
Confidence 555688888877421 11 112333455556667777764
No 402
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=28.78 E-value=62 Score=32.49 Aligned_cols=30 Identities=47% Similarity=0.674 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||- +|||+.+ .+.|...|++|..+
T Consensus 6 k~vlItGas-~gIG~~i-----a~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGA-SGLGRAI-----VDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 7888654 45666789888654
No 403
>PRK08703 short chain dehydrogenase; Provisional
Probab=28.75 E-value=65 Score=31.72 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||+.+ .+.|.++|++|...
T Consensus 7 k~vlItG~-sggiG~~l-----a~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGA-SQGLGEQV-----AKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECC-CCcHHHHH-----HHHHHHcCCEEEEE
Confidence 78999987 68888865 44566789887753
No 404
>PRK08017 oxidoreductase; Provisional
Probab=28.74 E-value=65 Score=31.88 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
|-|+|||| -++||+ ++.+.|..+|++|..+-.
T Consensus 3 k~vlVtGa-sg~IG~-----~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGC-SSGIGL-----EAALELKRRGYRVLAACR 34 (256)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeC
Confidence 67999998 466766 455667788999877543
No 405
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=28.73 E-value=65 Score=33.93 Aligned_cols=45 Identities=33% Similarity=0.559 Sum_probs=32.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceE
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEV 58 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgev 58 (601)
|=+|| .-|.||=.....+++.|..+|.+|..+-+||= ||+-.|-.
T Consensus 32 iGiTG--~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl 76 (266)
T PF03308_consen 32 IGITG--PPGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL 76 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S
T ss_pred EEeeC--CCCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc
Confidence 33555 35889999999999999999999999999995 78877764
No 406
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.68 E-value=72 Score=31.06 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (601)
-++++|. +|.||=-.|++||.-+-.+|++|..+..+-.+
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 4778886 79999999999999888899999998875443
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.62 E-value=67 Score=33.53 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=27.1
Q ss_pred EEEeCCccCCcchHHHHHH-HHHHHHHCCCeeEEeeecc
Q 007496 4 VLVTGGVVSGLGKGVTASS-IGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s-~g~ll~~~g~~v~~~k~dp 41 (601)
|-|||= -|.||=.+||. +-++++..|++|..+--||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445542 36799999999 5555555569999999999
No 408
>PRK05876 short chain dehydrogenase; Provisional
Probab=28.61 E-value=64 Score=33.01 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-++||||- ||||+.+ ...|.++|++|...
T Consensus 7 k~vlVTGas-~gIG~al-----a~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGA-SGIGLAT-----GTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 8998754 55667789888753
No 409
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=28.59 E-value=72 Score=34.71 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=27.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.|=|||- =|||-|++=|..+|++.|+||-..
T Consensus 19 ~vI~VtGT----NGKgSt~~~l~~iL~~~g~~vg~~ 50 (397)
T TIGR01499 19 PVIHVAGT----NGKGSTCAFLESILRAAGYKVGLF 50 (397)
T ss_pred CEEEEeCC----CChHHHHHHHHHHHHHcCCCeeEE
Confidence 56777774 599999999999999999999665
No 410
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=28.52 E-value=62 Score=34.40 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=17.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (601)
|+.|+||| +||-||-.+. ..|+..||-+
T Consensus 1 m~~vIiTG--lSGaGKs~Al----~~lED~Gy~c 28 (284)
T PF03668_consen 1 MELVIITG--LSGAGKSTAL----RALEDLGYYC 28 (284)
T ss_pred CeEEEEeC--CCcCCHHHHH----HHHHhcCeeE
Confidence 67777777 6777774433 4566666644
No 411
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=28.47 E-value=2.7e+02 Score=30.95 Aligned_cols=56 Identities=23% Similarity=0.179 Sum_probs=32.1
Q ss_pred HHHHhccCCCEEEECCCC------CCCchhHHHHHHHHHHHcCCCE--EEEehh-------HHHHHHHhcc
Q 007496 355 AAWKLLKGADGILVPGGF------GNRGVQGKILAAKYAREHRIPY--LGICLG-------MQVAVIEFAR 410 (601)
Q Consensus 355 ~a~~~L~~~DGIlvpGGf------G~rg~eg~i~aik~are~~iP~--LGICLG-------mQllaiefgr 410 (601)
..+..+.++|.++++||. +.+..-.....+..|+-.++|+ +|+-.| -|++...+.+
T Consensus 82 ~il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~~~~~s~~~~~~~~~~ 152 (385)
T COG2327 82 SILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPLKHPLSRQLLNYVLGG 152 (385)
T ss_pred HHHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCccCHHHHHHHHHHhcC
Confidence 466778899999999984 2222111122244455456665 565555 3666655554
No 412
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.22 E-value=2.8e+02 Score=27.59 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=21.7
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. ++ ......++.+++.++|+.-+
T Consensus 59 ~~vDgiii~~~--~~--~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 59 RKIDALVILPF--ES--APLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred cCCCEEEEeCC--Cc--hhhHHHHHHHHHCCCeEEEE
Confidence 47999999763 21 12224567777889998654
No 413
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=28.19 E-value=89 Score=32.43 Aligned_cols=34 Identities=41% Similarity=0.400 Sum_probs=27.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
|.|+||||- |-+.+.+-..|.++|++|...-.|+
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999974 6677888888888999997765555
No 414
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=28.19 E-value=26 Score=38.15 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=35.6
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc--CCCCCCCc
Q 007496 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN--TDAGTMSP 52 (601)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln--~d~gtmsp 52 (601)
+|.|+|-|=|.+++|+-||.++..+-++=.||+-. .|++.-+|
T Consensus 216 ~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 216 FVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred EEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 45678888888899999999999999999999854 46665555
No 415
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=27.96 E-value=1.2e+02 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=30.1
Q ss_pred CCCcEEEEeeCccccccCc-----chHHHHHHHHhhHcCCCCEEEEeeeeeee
Q 007496 138 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVPV 185 (601)
Q Consensus 138 ~~~dv~i~e~ggtvgdies-----~pf~ea~rq~~~~~g~~n~~~ih~~~vp~ 185 (601)
.+||+|||++|+ .|+.. .-|.+.++++-.++...+.-.|=++.-|.
T Consensus 66 ~~~d~vii~~G~--ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGG--NDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEeccc--cccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 489999999995 45532 23677888887777644554444554443
No 416
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=27.89 E-value=3.1e+02 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=21.1
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+.... . ...++.+.+.++|++-+
T Consensus 55 ~~vdgiii~~~~~~--~---~~~~~~~~~~~ipvv~i 86 (270)
T cd01545 55 SRVDGVILTPPLSD--N---PELLDLLDEAGVPYVRI 86 (270)
T ss_pred CCCCEEEEeCCCCC--c---cHHHHHHHhcCCCEEEE
Confidence 47999998764321 1 23466677788998654
No 417
>PRK04296 thymidine kinase; Provisional
Probab=27.80 E-value=1.3e+02 Score=29.32 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=27.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeecccccC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPYLNT 45 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~--~~g~~v~~~k~dpyln~ 45 (601)
+.+++||.+ |+|-|++.++.+.. .+|.+|-.+| |.+..
T Consensus 3 ~i~litG~~----GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~ 42 (190)
T PRK04296 3 KLEFIYGAM----NSGKSTELLQRAYNYEERGMKVLVFK--PAIDD 42 (190)
T ss_pred EEEEEECCC----CCHHHHHHHHHHHHHHHcCCeEEEEe--ccccc
Confidence 457777753 78888888888755 4789988885 54433
No 418
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.74 E-value=58 Score=33.76 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.|+|||| -||||+.++ ..|..+|++|..+
T Consensus 41 k~vlItGa-sggIG~~la-----~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAA-----EQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 478887654 4456678887654
No 419
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.72 E-value=3.2e+02 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=22.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+... +.....++.++++++|+.-+
T Consensus 55 ~~vdgiii~~~~~----~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 55 QKVDGIILWPTDG----QAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred cCCCEEEEecCCc----cccHHHHHHHHHCCCcEEEe
Confidence 4899999976321 11234567778889998654
No 420
>PF12846 AAA_10: AAA-like domain
Probab=27.65 E-value=93 Score=31.36 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
-++|+|. +|-||=.++.++-.-+-.+|..|-++ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678885 79999999999998888999887776 66
No 421
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.54 E-value=3.8e+02 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=21.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. +.. .....++.+++.++|+.-+
T Consensus 55 ~~vdgiil~~~--~~~--~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 55 LKPDGIVLGGV--DAA--ELQAELELAQKAGIPVVGW 87 (280)
T ss_pred cCCCEEEEcCC--CHH--HHHHHHHHHHHCCCCEEEe
Confidence 58999999862 111 1123456666778998765
No 422
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=27.48 E-value=82 Score=25.70 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccc
Q 007496 14 LGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFE 54 (601)
Q Consensus 14 ~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~ 54 (601)
+|=|++.-+.+..|+..|++|+++--.+++- |.+..+.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G---G~~~~~~ 39 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRLG---GRARSFR 39 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSSS---GGGCEEE
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcccC---cceeEEE
Confidence 5778999999999999999999999888863 4444443
No 423
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.48 E-value=3.2e+02 Score=27.98 Aligned_cols=31 Identities=6% Similarity=0.018 Sum_probs=20.7
Q ss_pred CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 362 ~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
++|||++.+.. ... -..++.+.++++|+.-+
T Consensus 58 ~vdgiIi~~~~--~~~---~~~~~~~~~~giPvV~~ 88 (305)
T cd06324 58 KPDALIFTNEK--SVA---PELLRLAEGAGVKLFLV 88 (305)
T ss_pred CCCEEEEcCCc--cch---HHHHHHHHhCCCeEEEE
Confidence 79999996532 211 23467777889997654
No 424
>PRK09620 hypothetical protein; Provisional
Probab=27.44 E-value=81 Score=32.22 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.6
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-|+||+| .+|--=-|-+.+.|...|..+|++|+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 55889988 6777777999999999999999999886
No 425
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.43 E-value=95 Score=32.32 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=95.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCC-ccccCCCCccccccCC
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG-GEVDLDLGNYERFMDI 80 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg-~e~dldlg~yerf~~~ 80 (601)
+.|.||.| ..|.||-.+|+.++..|...|+||-.+-.|=| .|..|-..=+ ++. +-+++--|.+ |
T Consensus 58 ~~I~V~S~-kgGvGKStva~nLA~alA~~G~rVlliDaD~~--------gps~~~~l~~-~~~~g~~~~~~g~~--~--- 122 (265)
T COG0489 58 NVIAVTSG-KGGVGKSTVAVNLAAALAQLGKRVLLLDADLR--------GPSIPRMLGL-ENLPGLTELLAGEA--L--- 122 (265)
T ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCC--------CCchHHHhCC-CCCCCcccccCCCc--c---
Confidence 45666665 47999999999999999999999999877754 2333322111 111 2233333333 2
Q ss_pred CCCCCCcccchHhhHHHHhhh-hcCCCCCCeeEEccc------chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc
Q 007496 81 KLTRDNNITTGKIYQSVIDKE-RKGDYLGKTVQVVPH------ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD 153 (601)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ke-r~g~ylg~tvqviph------it~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgd 153 (601)
+.++..- .++=..+-.+. .|+ .+..+++.|..+. +..+|++||+..==.||
T Consensus 123 --------------~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~~g~ 180 (265)
T COG0489 123 --------------EPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPGTGD 180 (265)
T ss_pred --------------ccceecCccceEEEEecCC-CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCCchH
Confidence 2222221 11111111111 334 4567788888886 45699999999987788
Q ss_pred cCcchHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEe
Q 007496 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (601)
Q Consensus 154 ies~pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R 217 (601)
... +=++.-.. .+. ...+-++-...=.+.++..++..++..-++|.-
T Consensus 181 ~d~-------~i~~~~~~--g~v--------iVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~N 227 (265)
T COG0489 181 ADA-------TVLQRIPD--GVV--------IVTTPGKTALEDVKKAIDMLEKAGIPVLGVVEN 227 (265)
T ss_pred HHH-------HHHhccCC--eEE--------EEeCCccchHHHHHHHHHHHHhcCCceEEEEec
Confidence 332 22222211 111 122346666666777888999999998888875
No 426
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=27.42 E-value=3.5e+02 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=21.0
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+...+.... ....++.+.+.++|+.-+
T Consensus 54 ~~vdgii~~~~~~~~~~~-~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 54 QGIDGLIIEPTKSALPNP-NIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred cCCCEEEEeccccccccc-cHHHHHHHHHCCCCEEEE
Confidence 589999987643322110 113456667778886543
No 427
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=27.35 E-value=4.1e+02 Score=27.31 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=40.5
Q ss_pred ceEEEEEcccCCCcchH-HHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCC
Q 007496 297 PVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFG 373 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY-~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG 373 (601)
.-.|+++-. .+.+.| ..+.+.++.+..+.+..+.+.+.. ++ ++.-.+..+.+ .++||||+.+...
T Consensus 61 ~~~Igvv~~--~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~-~~---------~~~~~~~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 61 TRSIGLIIP--DLENTSYARIAKYLERQARQRGYQLLIACSD-DQ---------PDNEMRCAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred CceEEEEeC--CCCCchHHHHHHHHHHHHHHcCCEEEEEeCC-CC---------HHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 457887732 233344 456666655554444443333321 11 11111222323 4899999976432
Q ss_pred CCchhHHHHHHHHHHHcCCCEEE
Q 007496 374 NRGVQGKILAAKYAREHRIPYLG 396 (601)
Q Consensus 374 ~rg~eg~i~aik~are~~iP~LG 396 (601)
. .. ..++.+.+.++|+.-
T Consensus 129 ~--~~---~~~~~l~~~~iPvV~ 146 (328)
T PRK11303 129 P--EH---PFYQRLQNDGLPIIA 146 (328)
T ss_pred C--Ch---HHHHHHHhcCCCEEE
Confidence 1 11 234555667888753
No 428
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=27.30 E-value=1.8e+02 Score=28.18 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=42.7
Q ss_pred HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhh-HHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCC
Q 007496 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIP 393 (601)
Q Consensus 315 SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~-~a~~~L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP 393 (601)
.+.+.|...|+.+.. ..+-+++ ++.-. ...+.++.+|-||++||-|-...+-..+++..+. +.|
T Consensus 23 ~l~~~L~~~G~~v~~----~~~v~Dd---------~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~--~~~ 87 (170)
T cd00885 23 FLAKELAELGIEVYR----VTVVGDD---------EDRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAF--GRP 87 (170)
T ss_pred HHHHHHHHCCCEEEE----EEEeCCC---------HHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHh--CCC
Confidence 456778888876532 1222221 11111 1233456899999999876655555667777665 455
Q ss_pred EEEEehhHHHHH
Q 007496 394 YLGICLGMQVAV 405 (601)
Q Consensus 394 ~LGICLGmQlla 405 (601)
+.+.=--++.+-
T Consensus 88 l~~~~e~~~~i~ 99 (170)
T cd00885 88 LVLDEEALERIE 99 (170)
T ss_pred cccCHHHHHHHH
Confidence 555544444443
No 429
>PRK07831 short chain dehydrogenase; Provisional
Probab=27.14 E-value=75 Score=31.82 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-++||||-=||||+.++ +.|.++|++|...
T Consensus 18 k~vlItG~sg~gIG~~ia-----~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA-----RRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHH-----HHHHHcCCEEEEE
Confidence 679999997568986554 6677889987653
No 430
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=27.02 E-value=52 Score=34.78 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=14.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHH
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSI 23 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~ 23 (601)
|+.|+||| +||-||.++.-|+
T Consensus 1 m~lvIVTG--lSGAGKsvAl~~l 21 (286)
T COG1660 1 MRLVIVTG--LSGAGKSVALRVL 21 (286)
T ss_pred CcEEEEec--CCCCcHHHHHHHH
Confidence 56777777 7777777766543
No 431
>PRK05717 oxidoreductase; Validated
Probab=26.90 E-value=67 Score=32.02 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||- +|||+.++ +.|-++|.+|..+
T Consensus 11 k~vlItG~s-g~IG~~~a-----~~l~~~g~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAA-RGIGLGIA-----AWLIAEGWQVVLA 40 (255)
T ss_pred CEEEEeCCc-chHHHHHH-----HHHHHcCCEEEEE
Confidence 789999995 66766544 5666778887765
No 432
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.57 E-value=71 Score=32.32 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.8
Q ss_pred EEEEEeCC-ccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGG-VVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtgg-v~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|.++|||| --+|||+.++ +.|-..|.+|..
T Consensus 7 k~~lITGa~~~~GIG~a~a-----~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYGIA-----KACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHHHH-----HHHHHCCCEEEE
Confidence 68999998 4689998755 446668988853
No 433
>PLN02913 dihydrofolate synthetase
Probab=26.54 E-value=44 Score=38.11 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=26.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.|=|+|= =|||-|++-|..+|++.||||-..
T Consensus 76 ~vIhVaGT----NGKGSt~a~l~~iL~~aG~~vG~f 107 (510)
T PLN02913 76 KAVHVAGT----KGKGSTAAFLSNILRAQGYSVGCY 107 (510)
T ss_pred cEEEEeCC----CchHHHHHHHHHHHHhcCCCeEEE
Confidence 35666663 599999999999999999999764
No 434
>PRK07806 short chain dehydrogenase; Provisional
Probab=26.33 E-value=80 Score=31.11 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|-|+||||- +|||+.++. .|.+.|++|..
T Consensus 7 k~vlItGas-ggiG~~l~~-----~l~~~G~~V~~ 35 (248)
T PRK07806 7 KTALVTGSS-RGIGADTAK-----ILAGAGAHVVV 35 (248)
T ss_pred cEEEEECCC-CcHHHHHHH-----HHHHCCCEEEE
Confidence 789999984 789887754 34467887765
No 435
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.32 E-value=74 Score=31.70 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|.++||||- ||||+. +.+.|-++|++|..
T Consensus 8 k~~lItGas-~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGT-RGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEE
Confidence 789999995 888875 45667778988764
No 436
>PRK08309 short chain dehydrogenase; Provisional
Probab=26.28 E-value=1e+02 Score=30.07 Aligned_cols=29 Identities=38% Similarity=0.639 Sum_probs=20.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|+ ++|||| ||+|+ + +...|..+|++|...
T Consensus 1 m~-vlVtGG--tG~gg----~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 1 MH-ALVIGG--TGMLK----R-VSLWLCEKGFHVSVI 29 (177)
T ss_pred CE-EEEECc--CHHHH----H-HHHHHHHCcCEEEEE
Confidence 44 789999 45552 3 666777899998864
No 437
>PRK07814 short chain dehydrogenase; Provisional
Probab=26.21 E-value=72 Score=32.07 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
|.++|||| -+|||+ ++...|.++|++|...-.+|
T Consensus 11 ~~vlItGa-sggIG~-----~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 11 QVAVVTGA-GRGLGA-----AIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 67899998 456665 45577778999987665443
No 438
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.15 E-value=1.2e+02 Score=26.60 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHH-HHHHHHHHHHCCCeeEEeeeccc
Q 007496 2 KYVLVTGGVVSGLGKGVT-ASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~-~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
|.++||| ||+|-... +..+=.+|+.+|+.+.....+.+
T Consensus 4 kILvvCg---sG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACG---GAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred eEEEECC---CchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 4678888 68888887 68888999999999888886554
No 439
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.08 E-value=76 Score=32.45 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.1
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~-s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||-= ||||+.++ +.|-..|++|.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA-----~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIA-----KQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHH-----HHHHhCCCEEEEe
Confidence 7899999986 69998765 4566789888653
No 440
>PRK12377 putative replication protein; Provisional
Probab=26.02 E-value=62 Score=33.52 Aligned_cols=59 Identities=27% Similarity=0.419 Sum_probs=45.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc-----CCCC-----CCCccccceEEEecC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN-----TDAG-----TMSPFEHGEVFVLDD 63 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln-----~d~g-----tmsp~~hgevfv~~d 63 (601)
.++++|. +|.||=-.|++|+..|...|++|..+...=.+. .+.+ .++.+..-+|-|+||
T Consensus 103 ~l~l~G~--~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDD 171 (248)
T PRK12377 103 NFVFSGK--PGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDE 171 (248)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcC
Confidence 4778886 499999999999999999999998877644333 1222 456667778888887
No 441
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=25.98 E-value=66 Score=32.22 Aligned_cols=29 Identities=38% Similarity=0.383 Sum_probs=21.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
-++||||- +|||+.++ +.|..+|++|...
T Consensus 2 ~vlItGas-~gIG~aia-----~~l~~~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNVA-----RELLKKGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHHH-----HHHHHcCCEEEEE
Confidence 38899985 88887654 5677789988765
No 442
>PRK06523 short chain dehydrogenase; Provisional
Probab=25.97 E-value=86 Score=31.20 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=25.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.|+||||- +|||+ ++...|..+|++|...-.+
T Consensus 10 k~vlItGas-~gIG~-----~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGT-KGIGA-----ATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCC-CchhH-----HHHHHHHHCCCEEEEEeCC
Confidence 689999984 57775 5666777889999877554
No 443
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=25.92 E-value=68 Score=30.45 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=32.5
Q ss_pred CCceEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCC
Q 007496 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (601)
Q Consensus 295 ~~~v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGG 371 (601)
....+|++||-+. -+++.|+..+.++.+ .-.+++....... .-+. ..+.+.|.++|.++++|-
T Consensus 9 ~~~~~V~~VG~f~-------P~~~~l~~~~~~v~v----~d~~~~~~~~~~~-~~~~--~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 9 GPGDKVGMVGYFQ-------PLVEKLKERGAEVRV----FDLNPDNIGEEPG-DVPD--EDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTSEEEEES--H-------CCHHHHCCCCSEEEE----EESSGGG--SSCT--EEG--GGHHHHGGG-SEEEEECH
T ss_pred cCCCEEEEEcCcH-------HHHHHHhcCCCCEEE----EECCCCCCCCCCC-cCCH--HHHHHHHccCCEEEEEee
Confidence 3457999999332 357888766665543 1222211111000 0011 124467899999999993
No 444
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.86 E-value=4.3e+02 Score=26.08 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=21.5
Q ss_pred cCCCEEEECCC-CCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGG-FGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGG-fG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. +.++ .....+++.+.+.++|+.-+
T Consensus 54 ~~vdgiIi~~~~~~~~--~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 54 RGVRGVVFISSLHADT--HADHSHYERLAERGLPVVLV 89 (273)
T ss_pred cCCCEEEEeCCCCCcc--cchhHHHHHHHhCCCCEEEE
Confidence 58999998653 2222 12234566677778997654
No 445
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=25.82 E-value=6.7e+02 Score=25.64 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=45.7
Q ss_pred CceEEEEEcccCCC---------cchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEE
Q 007496 296 EPVRIAMVGKYTGL---------SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGI 366 (601)
Q Consensus 296 ~~v~IalVGkY~~l---------~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGI 366 (601)
...+|+++--.++. ...|..+.+.|+.. +.+.- ++. ... +...++|.+
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~------~~l---~~~-------------~IP~~~d~L 201 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEE------LNL---ANE-------------EIPDDADVL 201 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-Cceee------cCC---ccc-------------ccCCCCCEE
Confidence 35678887656655 35777888999888 65422 111 100 223789999
Q ss_pred EECCCCCCCchhHHHHHHHHHHHcC
Q 007496 367 LVPGGFGNRGVQGKILAAKYAREHR 391 (601)
Q Consensus 367 lvpGGfG~rg~eg~i~aik~are~~ 391 (601)
||.| |-.+=.+..+.+++...+++
T Consensus 202 vi~~-P~~~ls~~e~~~l~~yl~~G 225 (271)
T PF09822_consen 202 VIAG-PKTDLSEEELYALDQYLMNG 225 (271)
T ss_pred EEEC-CCCCCCHHHHHHHHHHHHcC
Confidence 9988 44444566677887776664
No 446
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.79 E-value=2.8e+02 Score=29.08 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=46.4
Q ss_pred EEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchh
Q 007496 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (601)
Q Consensus 299 ~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~e 378 (601)
+|.+|| .-......|.+.-++.|+.... =.|+.-. |.... -..+..+|.|||.+ +..
T Consensus 73 ~Il~Vs---tr~~~~~~V~k~A~~tg~~~i~---~Rw~pGt-lTN~~-----------~~~f~~P~llIV~D----p~~- 129 (249)
T PTZ00254 73 DVVVVS---SRPYGQRAVLKFAQYTGASAIA---GRFTPGT-FTNQI-----------QKKFMEPRLLIVTD----PRT- 129 (249)
T ss_pred cEEEEE---cCHHHHHHHHHHHHHhCCeEEC---CcccCCC-CCCcc-----------ccccCCCCEEEEeC----CCc-
Confidence 477776 1222334566666666665422 3676532 22111 02346789999986 222
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q 007496 379 GKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 379 g~i~aik~are~~iP~LGIC 398 (601)
-..|++.|..-+||+.|+|
T Consensus 130 -d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 130 -DHQAIREASYVNIPVIALC 148 (249)
T ss_pred -chHHHHHHHHhCCCEEEEe
Confidence 2468899999999999999
No 447
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=25.67 E-value=2.6e+02 Score=28.38 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=47.2
Q ss_pred eEEEEEcccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCch
Q 007496 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (601)
Q Consensus 298 v~IalVGkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~ 377 (601)
-+|.+|| .-..+...|.++-+..|.... .=.|+.-. |..... +....+|.|++.+=
T Consensus 68 ~~ILfVg---Tk~~~~~~v~k~A~~~g~~~v---~~RWlgG~-LTN~~~-----------~~~~~Pdliiv~dp------ 123 (204)
T PRK04020 68 EKILVVS---SRQYGQKPVQKFAEVVGAKAI---TGRFIPGT-LTNPSL-----------KGYIEPDVVVVTDP------ 123 (204)
T ss_pred CeEEEEe---CCHHHHHHHHHHHHHhCCeee---cCccCCCc-CcCcch-----------hccCCCCEEEEECC------
Confidence 4789997 222244456666666665532 23687632 222111 12247899998872
Q ss_pred hHHHHHHHHHHHcCCCEEEEe
Q 007496 378 QGKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 378 eg~i~aik~are~~iP~LGIC 398 (601)
.....|+++|..-+||+.|||
T Consensus 124 ~~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 124 RGDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred cccHHHHHHHHHhCCCEEEEE
Confidence 223578999999999999998
No 448
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=25.65 E-value=72 Score=31.85 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||+ ++.+.|.+.|++|..+
T Consensus 11 k~~lItG~-~~gIG~-----a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 11 KVAVVTGC-DTGLGQ-----GMALGLAEAGCDIVGI 40 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEe
Confidence 78999998 467775 5666777889987643
No 449
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.65 E-value=6.6e+02 Score=25.25 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcccCCCCCCCCc-EEEEeeCc--cccccCcchHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCC
Q 007496 120 EIQDWIERVAMIPVDGKEGPVD-VCVIELGG--TIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP 196 (601)
Q Consensus 120 ~i~~~i~~~~~~~~d~~~~~~d-v~i~e~gg--tvgdies~pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkp 196 (601)
...++.++... .++| ++++.+.+ |. .-+.++.++|++..++ +|++. +|-..
T Consensus 28 d~~~~a~~~~~-------~G~~~i~i~d~~~~~~~----~~~~~~~i~~i~~~~~-----------~pv~~-~GGI~--- 81 (243)
T cd04731 28 DPVELAKRYNE-------QGADELVFLDITASSEG----RETMLDVVERVAEEVF-----------IPLTV-GGGIR--- 81 (243)
T ss_pred CHHHHHHHHHH-------CCCCEEEEEcCCccccc----CcccHHHHHHHHHhCC-----------CCEEE-eCCCC---
Confidence 34455555543 2334 66777654 33 3468899999988763 67664 45554
Q ss_pred ccchhhhhhcCCCcccEEEEecCCCCCchhhccccccCCCCCCCeeeeCC
Q 007496 197 TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYD 246 (601)
Q Consensus 197 tq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislf~~v~~~~Vi~i~d 246 (601)
+-..++.+.+.| .|.+++-+...-..++-.+++-. +..+.++-.-|
T Consensus 82 s~~d~~~~l~~G--~~~v~ig~~~~~~p~~~~~i~~~--~~~~~i~~~ld 127 (243)
T cd04731 82 SLEDARRLLRAG--ADKVSINSAAVENPELIREIAKR--FGSQCVVVSID 127 (243)
T ss_pred CHHHHHHHHHcC--CceEEECchhhhChHHHHHHHHH--cCCCCEEEEEE
Confidence 345566666777 56666644433344444444333 24444553333
No 450
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=25.57 E-value=76 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.4
Q ss_pred CCCEEEECCCCCCCc
Q 007496 362 GADGILVPGGFGNRG 376 (601)
Q Consensus 362 ~~DGIlvpGGfG~rg 376 (601)
..|.+|=.=|||..+
T Consensus 84 ~IdvLVNNAG~g~~g 98 (265)
T COG0300 84 PIDVLVNNAGFGTFG 98 (265)
T ss_pred cccEEEECCCcCCcc
Confidence 467666666888765
No 451
>PRK06217 hypothetical protein; Validated
Probab=25.51 E-value=69 Score=30.83 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll 27 (601)
|+-|+|+| .||-||...|..|+..|
T Consensus 1 ~~~I~i~G--~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITG--ASGSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHc
Confidence 66799999 68999999999888765
No 452
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=25.38 E-value=1.4e+02 Score=31.49 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=49.9
Q ss_pred HHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcC
Q 007496 317 LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHR 391 (601)
Q Consensus 317 i~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~r-----g~eg~i~aik~are~~ 391 (601)
++..+..|++..-.+++.|-+-.+. ....+.+.+++||++.||--.| ......++++.-..++
T Consensus 73 ~rife~~gv~~v~ildir~R~~a~~------------s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G 140 (293)
T COG4242 73 IRIFEMMGVEEVQILDIRNREDASS------------SDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRG 140 (293)
T ss_pred hhHHHHhccceeEEEeeecccccch------------HHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcC
Confidence 4466667776544455555432211 1233567899999999974433 1234567777666678
Q ss_pred CCEEEEehhHHHHH
Q 007496 392 IPYLGICLGMQVAV 405 (601)
Q Consensus 392 iP~LGICLGmQlla 405 (601)
+-+-|.-.|.-+|.
T Consensus 141 ~avgGTSAGAavM~ 154 (293)
T COG4242 141 IAVGGTSAGAAVMS 154 (293)
T ss_pred ceecccccchhhcC
Confidence 99999999888774
No 453
>PRK02496 adk adenylate kinase; Provisional
Probab=25.38 E-value=79 Score=30.24 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll 27 (601)
|+-|+|+|+ +|-||+..|.-|...+
T Consensus 1 ~~~i~i~G~--pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTRLIFLGP--PGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHh
Confidence 567899998 8999998888887644
No 454
>PRK06720 hypothetical protein; Provisional
Probab=25.09 E-value=80 Score=30.44 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||..+.. .|...|++|...
T Consensus 17 k~~lVTGa-~~GIG~aia~-----~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGG-GIGIGRNTAL-----LLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecC-CChHHHHHHH-----HHHHCCCEEEEE
Confidence 68999999 4688887654 355678766543
No 455
>PRK06761 hypothetical protein; Provisional
Probab=25.04 E-value=81 Score=33.43 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=29.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
+.|+|+|- +|-||-.++..+..-|..+|++|..
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEE
Confidence 67899985 8999999999999999999998875
No 456
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=24.95 E-value=89 Score=31.25 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=23.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
+++||||- +|||+.++- .+...++..|++|...-
T Consensus 2 ~vlItGas-~GIG~~~a~-~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQ-ELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCC-CchHHHHHH-HHHHhhccCCcEEEEEE
Confidence 68999986 999987654 23333445799886653
No 457
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=24.70 E-value=98 Score=30.26 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=22.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
||.++|||| -++||.. +.+.|-++|++|..
T Consensus 1 ~~~~lItGa-~g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 789999999 4667765 45556678988864
No 458
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.58 E-value=67 Score=33.81 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=28.3
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGICLGm 401 (601)
.++|-+++=||=| -++.+++.+...++|+|||=+|.
T Consensus 41 ~~~d~vi~iGGDG-----T~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 41 QRAQLAIVIGGDG-----NMLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred cCCCEEEEECCcH-----HHHHHHHHhccCCCcEEEEeCCC
Confidence 4789999999744 25677777767789999998774
No 459
>PRK09186 flagellin modification protein A; Provisional
Probab=24.56 E-value=85 Score=31.02 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.|+||||- +|||+-+ ...|..+|++|...
T Consensus 5 k~vlItGas-~giG~~~-----a~~l~~~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGAG-GLIGSAL-----VKAILEAGGIVIAA 34 (256)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 6777654 55667789988766
No 460
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=24.55 E-value=1.1e+02 Score=29.90 Aligned_cols=104 Identities=19% Similarity=0.120 Sum_probs=62.1
Q ss_pred cCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHHhhHcCCCCEEEEeeee
Q 007496 103 KGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSL 182 (601)
Q Consensus 103 ~g~ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~~~~~g~~n~~~ih~~~ 182 (601)
+|.|-|...++=..+-+++.++|++... .-+.=+++-.+||-=|===+...+|.+|++ +.. + +-...
T Consensus 54 ~G~~~~~~~~~g~~~~~~~~~~ir~~le------~~d~~~i~~slgGGTGsG~~~~i~~~~~~~----~~~--~-~~~~v 120 (192)
T smart00864 54 RGLGAGADPEVGREAAEESLDEIREELE------GADGVFITAGMGGGTGTGAAPVIAEIAKEY----GIL--T-VAVVT 120 (192)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHhc------CCCEEEEeccCCCCccccHHHHHHHHHHHc----CCc--E-EEEEE
Confidence 6888888888888889999999998863 112224556788755544444556777743 322 2 44556
Q ss_pred eeeecCCCccccCCccchhhhhhcCCCcccEEEEecCCCCC
Q 007496 183 VPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALD 223 (601)
Q Consensus 183 vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~ 223 (601)
.|.. .|-.++| +.++..|+.+-=..|.+++=+-..|.
T Consensus 121 ~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l~ 157 (192)
T smart00864 121 KPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDALL 157 (192)
T ss_pred EeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHHH
Confidence 6733 3333322 34444444444467887776554443
No 461
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=24.51 E-value=1.4e+02 Score=29.97 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=21.7
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+. +. +.....++.+.+.++|+.-+
T Consensus 53 ~~~dgiii~~~--~~--~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 53 QGAKGFVICVP--DV--KLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred cCCCEEEEccC--ch--hhhHHHHHHHHhCCCeEEEe
Confidence 57999999762 11 11234567777888998765
No 462
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=24.38 E-value=2.8e+02 Score=31.11 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=40.1
Q ss_pred CCCcEEEEe--eCccccccC-cchHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCC--ccchhhhhhcCCCccc
Q 007496 138 GPVDVCVIE--LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP--TQHSVRGLRGQGLTPN 212 (601)
Q Consensus 138 ~~~dv~i~e--~ggtvgdie-s~pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkp--tq~sv~~Lrs~Gi~pd 212 (601)
.+.=-+|+| +-|.-|.+. +.-|++++|++..+.| +++|- .|..|== |= ..=-.+..|+.||
T Consensus 220 ~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~g---illI~----------DEV~TG~GRtG-~~fa~~~~gv~PD 285 (453)
T PRK06943 220 GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYG---VHLIA----------DEIAVGCGRTG-TFFACEQAGVWPD 285 (453)
T ss_pred CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcC---CEEEe----------echhhCCCCCc-chhHHHhCCCCCC
Confidence 355678999 456666543 5669999999999976 55542 3433310 10 0001133699999
Q ss_pred EEEE
Q 007496 213 ILAC 216 (601)
Q Consensus 213 ~iv~ 216 (601)
++++
T Consensus 286 ivt~ 289 (453)
T PRK06943 286 FLCL 289 (453)
T ss_pred eEee
Confidence 9987
No 463
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=24.36 E-value=94 Score=32.15 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRV 34 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~-~g~~v 34 (601)
|+.|-+|||.-| || |++..+|++ .|+.|
T Consensus 1 M~iIGlTGgIgS--GK----StVs~~L~~~~G~~v 29 (244)
T PTZ00451 1 MILIGLTGGIAC--GK----STVSRILREEHHIEV 29 (244)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHHcCCeE
Confidence 788999999877 46 688889997 59977
No 464
>PRK06182 short chain dehydrogenase; Validated
Probab=24.35 E-value=85 Score=31.67 Aligned_cols=33 Identities=39% Similarity=0.415 Sum_probs=24.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
+|.|+|||| -||||+.++ ..|..+|++|..+--
T Consensus 3 ~k~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~r 35 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATA-----RRLAAQGYTVYGAAR 35 (273)
T ss_pred CCEEEEECC-CChHHHHHH-----HHHHHCCCEEEEEeC
Confidence 378999997 478887654 556678999886533
No 465
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=24.29 E-value=1e+02 Score=33.48 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=33.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (601)
++++| ++|-||=..+..+...|. .+|++|..+-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 45666 689999999999998886 7999999999998874
No 466
>PRK07985 oxidoreductase; Provisional
Probab=24.28 E-value=84 Score=32.53 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|.++||||- +|||+. +.+.|..+|++|.+
T Consensus 50 k~vlITGas-~gIG~a-----ia~~L~~~G~~Vi~ 78 (294)
T PRK07985 50 RKALVTGGD-SGIGRA-----AAIAYAREGADVAI 78 (294)
T ss_pred CEEEEECCC-CcHHHH-----HHHHHHHCCCEEEE
Confidence 689999985 788864 55667778998765
No 467
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.22 E-value=4e+02 Score=26.02 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=21.4
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LGI 397 (601)
.++|||++.+ ... ......++.+++.++|+.-+
T Consensus 54 ~~~dgii~~~-~~~---~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 54 RGVDAIIINP-TDS---DAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred cCCCEEEEcC-CCh---HHHHHHHHHHHHCCCcEEEE
Confidence 4799999854 221 12234567777788998766
No 468
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.21 E-value=87 Score=31.13 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
|.++|||| -+|||+.+ ...|.++|.+|...=
T Consensus 2 k~~lItG~-s~giG~~i-----a~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGG-SSGMGKAM-----AKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCC-CChHHHHH-----HHHHHHCCCEEEEEe
Confidence 77999999 67777654 556667898877653
No 469
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.19 E-value=86 Score=31.27 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-++||||- +|||+. +.+.|-++|++|...
T Consensus 8 k~vlVtGas-~gIG~~-----~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAA-QGIGAA-----IARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 788865 446667889988754
No 470
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=24.18 E-value=78 Score=33.04 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-|+||||- +|||.-+ .+.|..+|++|...
T Consensus 7 k~vlVTGas-~gIG~~~-----a~~L~~~G~~V~~~ 36 (322)
T PRK07453 7 GTVIITGAS-SGVGLYA-----AKALAKRGWHVIMA 36 (322)
T ss_pred CEEEEEcCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 779999995 7888754 45556678877654
No 471
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.95 E-value=1e+02 Score=30.39 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=22.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|+-|+|||| -+|||+ .+.+.|.++|++|..+
T Consensus 1 ~~~vlItGa-sggiG~-----~ia~~l~~~G~~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGH-SRGLGA-----ALAEQLLQPGIAVLGV 31 (243)
T ss_pred CceEEEecC-CcchHH-----HHHHHHHhCCCEEEEE
Confidence 567899998 567776 4445566789998776
No 472
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.92 E-value=86 Score=31.16 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++||||- +|||+.++ +.|-.+|++|...
T Consensus 7 k~~lItGas-~giG~~ia-----~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGAS-SGIGRAAA-----KLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 689999986 78887654 4556788887554
No 473
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.89 E-value=85 Score=31.40 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=24.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (601)
|.++||||- +|||+- +...|.++|.+|...-.+
T Consensus 9 k~~lItGas-~giG~~-----ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGS-SGIGLA-----TVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 679999975 778764 556667889998775444
No 474
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=23.80 E-value=80 Score=31.02 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (601)
-|.+|| +||-||-.+|.++-+.|-.+|.-.
T Consensus 33 viWiTG--LSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 33 VIWITG--LSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred EEEEec--cCCCCchhHHHHHHHHHHhcCceE
Confidence 377888 899999999999999999998643
No 475
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=23.76 E-value=1.7e+02 Score=29.34 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=44.2
Q ss_pred chHhhHHHHhhhhcCCCCCC--eeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc--------------cc
Q 007496 90 TGKIYQSVIDKERKGDYLGK--TVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI--------------GD 153 (601)
Q Consensus 90 ~gkiy~~vi~ker~g~ylg~--tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtv--------------gd 153 (601)
+|..-...+++ .| +.|- ...+||.=-++|++.|++... ..+.|++|+= |||- +|
T Consensus 24 ng~~L~~~L~~--~G-~~g~~v~~~iVpDd~~~I~~aL~~a~~------~~~~DlIITT-GGtg~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 24 GIPALEEWLAS--AL-TSPFEIETRLIPDEQDLIEQTLIELVD------EMGCDLVLTT-GGTGPARRDVTPEATLAVAD 93 (193)
T ss_pred hHHHHHHHHHH--cC-CCCceEEEEECCCCHHHHHHHHHHHhh------cCCCCEEEEC-CCCCCCCCCcHHHHHHHHhC
Confidence 45555555543 23 2232 227999999999999998862 2468988887 9984 34
Q ss_pred cCcchHHHHHHHHhhH
Q 007496 154 IESMPFIEALGQFSYR 169 (601)
Q Consensus 154 ies~pf~ea~rq~~~~ 169 (601)
-|=--|-||+|++.++
T Consensus 94 keipG~~e~~r~~s~~ 109 (193)
T PRK09417 94 KEMPGFGEQMRQISLK 109 (193)
T ss_pred CcCCcHHHHHHHHhcc
Confidence 4444455666666543
No 476
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.75 E-value=98 Score=31.02 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.7
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv-~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|-|+||||- .+|||+. +.+.|.++|.+|...
T Consensus 7 k~vlVtGas~~~giG~~-----~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAA-----ICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHH-----HHHHHHHCCCeEEEE
Confidence 789999998 4899965 456677788887553
No 477
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=23.74 E-value=1e+02 Score=30.17 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=20.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (601)
|+-|.||||.-| ||. +++.+|+++|+.|
T Consensus 2 ~~~i~ltG~~gs--GKs----t~~~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGS--GKS----TVANLFAELGAPV 29 (194)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHcCCEE
Confidence 578999999655 674 5666777778654
No 478
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.66 E-value=1.4e+02 Score=26.65 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=30.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (601)
++|+|. +|.||-.++..+...+...|.+|..+-.+..
T Consensus 2 ~~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGP--TGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 577887 8999999999999999888888866655444
No 479
>PRK05599 hypothetical protein; Provisional
Probab=23.64 E-value=70 Score=31.99 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||+.++.. |. .|.+|...
T Consensus 1 ~~vlItGa-s~GIG~aia~~----l~--~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATL----LC--HGEDVVLA 29 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHH----Hh--CCCEEEEE
Confidence 46899999 59999988764 23 37776543
No 480
>PLN02780 ketoreductase/ oxidoreductase
Probab=23.64 E-value=72 Score=33.77 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
|.++|||| -||||+.++ ..|..+|++|..+=.
T Consensus 54 ~~~lITGA-s~GIG~alA-----~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGP-TDGIGKGFA-----FQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCCEEEEEC
Confidence 68999998 588998654 567778998877643
No 481
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.57 E-value=81 Score=31.61 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHHHHH--CCCeeEEeee
Q 007496 13 GLGKGVTASSIGVLLKA--CGLRVTCIKI 39 (601)
Q Consensus 13 ~~gkg~~~~s~g~ll~~--~g~~v~~~k~ 39 (601)
|=|||-|.|++|..|++ .|++|.++.|
T Consensus 30 g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 30 GNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46999999999999887 5678888766
No 482
>PLN00198 anthocyanidin reductase; Provisional
Probab=23.53 E-value=1.2e+02 Score=31.73 Aligned_cols=35 Identities=37% Similarity=0.372 Sum_probs=26.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
+|.|+||||- |-+.+.+...|..+|++|..+-.|+
T Consensus 9 ~~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 9 KKTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3679999985 5666777777888999997765554
No 483
>PLN02778 3,5-epimerase/4-reductase
Probab=23.50 E-value=1e+02 Score=32.25 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=24.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
|+|||| -|-+-+.+-+.|.++|++|+.
T Consensus 12 iLVtG~------tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 12 FLIYGK------TGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred EEEECC------CCHHHHHHHHHHHhCCCEEEE
Confidence 899996 699999999999999999874
No 484
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.44 E-value=1.6e+02 Score=32.77 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCceEEEEEcccCCCcchHHH-HHHHHHHccccceeEEEEEeecCCCcccccc----cCCchhhhHHHHhccCCCEEE
Q 007496 293 GLHEPVRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKKLVIDWIPACDLEDATE----KENPDAYKAAWKLLKGADGIL 367 (601)
Q Consensus 293 ~~~~~v~IalVGkY~~l~DaY~S-Ii~aL~~ag~~~~vkv~i~wi~s~~le~~~~----~~~p~~y~~a~~~L~~~DGIl 367 (601)
+..+..+|.++| +..+=.| +.+.|.+.|+++...=.-.+-..++|+.... ..++ +.+.++|-|+
T Consensus 3 ~~~~~~~v~viG----~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-------~~~~~~d~vv 71 (461)
T PRK00421 3 ELRRIKRIHFVG----IGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDA-------ENIKDADVVV 71 (461)
T ss_pred CcCCCCEEEEEE----EchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCH-------HHCCCCCEEE
Q ss_pred ECCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 007496 368 VPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (601)
Q Consensus 368 vpGGfG~rg~eg~i~aik~are~~iP~LG 396 (601)
+|+|-..... .++.|++.++|+++
T Consensus 72 ~spgi~~~~~-----~~~~a~~~~i~i~~ 95 (461)
T PRK00421 72 YSSAIPDDNP-----ELVAARELGIPVVR 95 (461)
T ss_pred ECCCCCCCCH-----HHHHHHHCCCcEEe
No 485
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=23.41 E-value=66 Score=34.37 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=6.0
Q ss_pred EEcccCCCcCC
Q 007496 521 GVQFHPEYKSR 531 (601)
Q Consensus 521 GVQFHPE~ss~ 531 (601)
.=.+||.+...
T Consensus 281 ~R~~HP~Y~~~ 291 (302)
T PF08497_consen 281 TRRPHPSYKKK 291 (302)
T ss_pred CCCCCcccCCC
Confidence 45566666543
No 486
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=23.39 E-value=1.1e+02 Score=30.20 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=30.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (601)
..|.|+| .||-||-..+..|-.+|+. ..+..+-.|.|+.
T Consensus 7 ~vi~I~G--~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~ 45 (207)
T TIGR00235 7 IIIGIGG--GSGSGKTTVARKIYEQLGK--LEIVIISQDNYYK 45 (207)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHhcc--cCCeEeccccccc
Confidence 4577888 6999999999999998875 4566677777753
No 487
>PLN02884 6-phosphofructokinase
Probab=23.33 E-value=1.1e+02 Score=34.20 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=43.3
Q ss_pred hhhHHHHhc--cCCCEEEECCCCCCCchhHHHHHHHHHHHcC--CCEEEE-------------ehhHHHHHHHhcccccc
Q 007496 352 AYKAAWKLL--KGADGILVPGGFGNRGVQGKILAAKYAREHR--IPYLGI-------------CLGMQVAVIEFARSVLN 414 (601)
Q Consensus 352 ~y~~a~~~L--~~~DGIlvpGGfG~rg~eg~i~aik~are~~--iP~LGI-------------CLGmQllaiefgrnV~g 414 (601)
.+.++.+.| .+.|++++=||.|+- .+.....+++++.+ +|+.|| |+|+.-++-..+..+-.
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~--~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~ 208 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTH--AGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 208 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHH--HHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 456667777 489999999987753 33444555666655 999999 99999997555554433
No 488
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.26 E-value=4.4e+02 Score=28.13 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=45.5
Q ss_pred ceEEEEEcccCCCcchHH-HHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhc--cCCCEEEECCCCC
Q 007496 297 PVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFG 373 (601)
Q Consensus 297 ~v~IalVGkY~~l~DaY~-SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlvpGGfG 373 (601)
..+|+++-|.. .+.|. .+.+.++.++-+.++.+. +..+.+- +++.-...-+.+ .++|||++.+-
T Consensus 23 ~~~i~~v~k~~--~~pf~~~~~~Gi~~aa~~~G~~v~--~~~~~~~-------d~~~q~~~i~~li~~~vdgIiv~~~-- 89 (336)
T PRK15408 23 AERIAFIPKLV--GVGFFTSGGNGAKEAGKELGVDVT--YDGPTEP-------SVSGQVQLINNFVNQGYNAIIVSAV-- 89 (336)
T ss_pred CcEEEEEECCC--CCHHHHHHHHHHHHHHHHhCCEEE--EECCCCC-------CHHHHHHHHHHHHHcCCCEEEEecC--
Confidence 45899996543 23554 455555555544444432 2222111 111100111222 58999999741
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEe
Q 007496 374 NRGVQGKILAAKYAREHRIPYLGIC 398 (601)
Q Consensus 374 ~rg~eg~i~aik~are~~iP~LGIC 398 (601)
+ .......++.+++.++|+.-+-
T Consensus 90 d--~~al~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 90 S--PDGLCPALKRAMQRGVKVLTWD 112 (336)
T ss_pred C--HHHHHHHHHHHHHCCCeEEEeC
Confidence 2 2233467788888899987653
No 489
>PRK12743 oxidoreductase; Provisional
Probab=23.25 E-value=92 Score=31.09 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (601)
+|-++|||| -||||.- +...|-.+|++|.+
T Consensus 2 ~k~vlItGa-s~giG~~-----~a~~l~~~G~~V~~ 31 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKA-----CALLLAQQGFDIGI 31 (256)
T ss_pred CCEEEEECC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 477999998 4888864 55566667887643
No 490
>PRK09242 tropinone reductase; Provisional
Probab=23.23 E-value=87 Score=31.18 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=21.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (601)
|.++|||| -+|||+.+ ...|.++|++|.++
T Consensus 10 k~~lItGa-~~gIG~~~-----a~~l~~~G~~v~~~ 39 (257)
T PRK09242 10 QTALITGA-SKGIGLAI-----AREFLGLGADVLIV 39 (257)
T ss_pred CEEEEeCC-CchHHHHH-----HHHHHHcCCEEEEE
Confidence 78999988 57787654 45566788877655
No 491
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=23.21 E-value=1.2e+02 Score=35.50 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007496 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (601)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (601)
||.|=|+|= |+-||-....-|=..|+.+||||..||=|.
T Consensus 10 ~~vi~ivG~--s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAY--SGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 466667774 999999999999999999999999999754
No 492
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=22.72 E-value=3.5e+02 Score=30.43 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=39.4
Q ss_pred CcEEEEe-eCccccccC-cchHHHHHHHHhhHcCCCCEEEEeeeeeeeecCCCccccCC--ccchhhhhhcCCCcccEEE
Q 007496 140 VDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP--TQHSVRGLRGQGLTPNILA 215 (601)
Q Consensus 140 ~dv~i~e-~ggtvgdie-s~pf~ea~rq~~~~~g~~n~~~ih~~~vp~~~~~~e~ktkp--tq~sv~~Lrs~Gi~pd~iv 215 (601)
.=-+|+| |-|.-|.+. +.-|++++|++..+.| +++|- .|..|== |= ..-..+..|+.||+++
T Consensus 232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g---iLlI~----------DEV~tGfGRtG-~~~a~e~~gv~PDiv~ 297 (464)
T PRK06938 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG---IPLIV----------DEIQSGFGRTG-KMFAFEHAGIIPDVVV 297 (464)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC---CEEEE----------eccccCCCcCc-HHHHHHhcCCCCCEEE
Confidence 4457888 444445543 5789999999999977 55552 3443310 10 1112345799999988
Q ss_pred E
Q 007496 216 C 216 (601)
Q Consensus 216 ~ 216 (601)
+
T Consensus 298 ~ 298 (464)
T PRK06938 298 L 298 (464)
T ss_pred e
Confidence 7
No 493
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.51 E-value=3.5e+02 Score=28.32 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=50.4
Q ss_pred cccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHH
Q 007496 304 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 383 (601)
Q Consensus 304 GkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~a 383 (601)
|||. +...+.++++.+|.++ +.+-+..++... +.. ...|+.+..-+--++|+=.|-+..+..+..
T Consensus 24 gky~----s~~~~~~av~asg~~i-vTvAlRR~~~~~--~~~--------~~~l~~l~~~~~~~LPNTaGc~taeEAv~t 88 (262)
T COG2022 24 GKYP----SPAVLAEAVRASGSEI-VTVALRRVNATR--PGG--------DGILDLLIPLGVTLLPNTAGCRTAEEAVRT 88 (262)
T ss_pred CCCC----CHHHHHHHHHhcCCce-EEEEEEeecccC--CCc--------chHHHHhhhcCcEeCCCccccCCHHHHHHH
Confidence 5666 5567789999999986 446677775421 111 135666666666799998888888888888
Q ss_pred HHHHHH
Q 007496 384 AKYARE 389 (601)
Q Consensus 384 ik~are 389 (601)
++-|||
T Consensus 89 ArlARE 94 (262)
T COG2022 89 ARLARE 94 (262)
T ss_pred HHHHHH
Confidence 888887
No 494
>PRK06125 short chain dehydrogenase; Provisional
Probab=22.50 E-value=95 Score=30.98 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (601)
|.++|||| -+|||+.++. .|..+|.+|...=.
T Consensus 8 k~vlItG~-~~giG~~ia~-----~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAAE-----AFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCC-CchHHHHHHH-----HHHHcCCEEEEEeC
Confidence 78999998 5888886654 45567888776533
No 495
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=22.45 E-value=92 Score=31.19 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007496 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (601)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (601)
|-++|||| -||||+. +...|..+|++|..+-
T Consensus 7 k~vlVtGa-s~gIG~~-----ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGG-GSGIGRA-----LVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 68999998 4777754 5566677899887653
No 496
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=22.45 E-value=2.1e+02 Score=30.79 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=48.3
Q ss_pred cchHhhHHHHhhhhcCC-------CCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----
Q 007496 89 TTGKIYQSVIDKERKGD-------YLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (601)
Q Consensus 89 t~gkiy~~vi~ker~g~-------ylg~tvqviphit~~i~~~i~~~~~~~~d~~~~~~dv~i~e~ggtvgdies~---- 157 (601)
....+|.+..++-|--. +.|-|.+-.| .++..+.+-| ....|++++|++|| .|+=+-
T Consensus 75 ~~~S~y~rl~~~n~c~hrd~qN~G~sGatSrdl~-------~~l~~Ll~n~---~~~~P~lVtI~lGg--ND~C~g~~d~ 142 (305)
T cd01826 75 FTDSLYLRLRERNRCNHRDYQNLGVNGASSRNLL-------SIIKSIARNR---TTDKPALVIYSMIG--NDVCNGPNDT 142 (305)
T ss_pred ccccHHHHHhhccccchhhHHHhccchhhhHHHH-------HHHHHhcccc---ccCCCeEEEEEecc--chhhcCCCcc
Confidence 34578988888766443 4666665555 3444443211 23469999999999 887431
Q ss_pred -----h------HHHHHHHHhhHcCCC
Q 007496 158 -----P------FIEALGQFSYRVGPG 173 (601)
Q Consensus 158 -----p------f~ea~rq~~~~~g~~ 173 (601)
| +.+++++|+.++.++
T Consensus 143 ~~~tp~eefr~NL~~~L~~Lr~~lP~~ 169 (305)
T cd01826 143 INHTTPEEFYENVMEALKYLDTKLPNG 169 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 788899999887653
No 497
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=22.42 E-value=1.4e+02 Score=29.62 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=41.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEecCC
Q 007496 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (601)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg 64 (601)
-++++|. +|.||=-.|.+++.-+...|.++..+..+.-... ....+++.+.+.||-
T Consensus 44 ~~~l~G~--~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGE--AGSGRSHLLQALVADASYGGRNARYLDAASPLLA----FDFDPEAELYAVDDV 99 (227)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH----HhhcccCCEEEEeCh
Confidence 4677886 7999999999999999889998888776543221 133456788888874
No 498
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.37 E-value=4.5e+02 Score=27.19 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=20.2
Q ss_pred cCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 007496 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (601)
Q Consensus 361 ~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~LG 396 (601)
.++||||+.+... .. ...++.+++.++|+.=
T Consensus 119 ~~vdgiIi~~~~~--~~---~~~~~~l~~~~iPvV~ 149 (342)
T PRK10014 119 QGVDGVVIAGAAG--SS---DDLREMAEEKGIPVVF 149 (342)
T ss_pred CCCCEEEEeCCCC--Cc---HHHHHHHhhcCCCEEE
Confidence 4799999977432 11 1345666777888753
No 499
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=22.36 E-value=1.3e+02 Score=31.44 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=47.7
Q ss_pred cccCCCcchHHHHHHHHHHccccceeEEEEEeecCCCcccccccCCchhhhHHHHhccCCCEEEECCCCCCCchhHHHHH
Q 007496 304 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 383 (601)
Q Consensus 304 GkY~~l~DaY~SIi~aL~~ag~~~~vkv~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlvpGGfG~rg~eg~i~a 383 (601)
|||. ++.-+.++++.+|.++ +.+-+..++...-. .....|+.+..-+--++|+=.|-+..+..+..
T Consensus 16 gky~----s~~~m~~ai~aSg~ev-vTvalRR~~~~~~~---------~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~ 81 (247)
T PF05690_consen 16 GKYP----SPEVMREAIEASGAEV-VTVALRRVNLGSKP---------GGDNILDYIDRSGYTLLPNTAGCRTAEEAVRT 81 (247)
T ss_dssp STSS----SHHHHHHHHHHTT-SE-EEEECCGSTTTS-T---------TCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHH
T ss_pred CCCC----CHHHHHHHHHHhCCcE-EEEEEecccCCCCC---------CCccHHHHhcccCCEECCcCCCCCCHHHHHHH
Confidence 5776 6777889999999996 44566666654310 01224555666667899998788888888888
Q ss_pred HHHHHH
Q 007496 384 AKYARE 389 (601)
Q Consensus 384 ik~are 389 (601)
++-+||
T Consensus 82 A~laRe 87 (247)
T PF05690_consen 82 ARLARE 87 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888887
No 500
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=22.33 E-value=68 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.5
Q ss_pred ccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007496 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (601)
Q Consensus 360 L~~~DGIlvpGGfG~rg~eg~i~aik~are~~iP~L 395 (601)
|+.+|+++++-=+|-..-.|+-.-++.|.+.++|++
T Consensus 77 L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 77 LDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 578999999997787777898899999999999986
Done!