BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007497
(601 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55G83|ABKC_DICDI Probable serine/threonine-protein kinase abkC OS=Dictyostelium
discoideum GN=abkC PE=3 SV=1
Length = 689
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/471 (35%), Positives = 249/471 (52%), Gaps = 71/471 (15%)
Query: 179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
+ V + +R L LG++ PS++ P F P +ELW ++L T++ +G +IK+GQW
Sbjct: 151 INLVKIGIRVLELGLILLPSVLTFPCC--FIPGVKELWWQLLLETIQFSGTCWIKFGQWI 208
Query: 239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAF-GRRLSEIFDGFEEAPVASGSI 297
+TRPDLFP L +K S+LHS+ P HSF +T ++IE +F G+ + ++F F+E P+ASGS+
Sbjct: 209 STRPDLFPDLLIEKFSQLHSQCPSHSFQFTNESIENSFNGKSIKDLFLWFDEEPMASGSV 268
Query: 298 AQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRL 357
AQVH+A G+ V VKV HP V +I+RDF II S IP +KWL L
Sbjct: 269 AQVHKA---LTMDGK-----VAVVKVLHPNVKSNIKRDFFIIYSLIWAFSHIPEMKWLSL 320
Query: 358 DESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGE 417
ES+ +F MM Q DL EA+HL+RF NF+ +V FPKP+YPLV VLVE++E G
Sbjct: 321 PESILEFGKSMMKQADLELEASHLNRFNSNFKYNSEVIFPKPLYPLVSKEVLVESFEPGS 380
Query: 418 CVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQK---KSSQ 474
+ ++ + H LA IG A ++M+LVDNF+HAD+HPGN+LVR + KS
Sbjct: 381 PIMDFIKKNDHH---NPTLAKIGLSAYMQMMLVDNFVHADLHPGNVLVRTSDDDNFKSID 437
Query: 475 KRLFR----------------------------------------------------SKP 482
F+ S P
Sbjct: 438 NNYFKKYNNDNDQQQQQQYNLPFKRKLYDTIEKSHKKFDSMLGGIQLKSIDFKEHQKSSP 497
Query: 483 HVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKA--FIEE 540
+IFLDVG+ +L + D+ + +E F + +G+ AE +R +++ C + F E
Sbjct: 498 KLIFLDVGLVTQLGQQDKDHFIELFTEIVNGNGKEGAELLIRYAREAKCTEEEMYQFKER 557
Query: 541 VDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLE 591
+ F + VH + M ++L VR + V ++ N T+++ T+VLE
Sbjct: 558 MGTLFNQVQNSKLSEVHVGQFMSEILGLVREYHVKIESNFATLVMGTIVLE 608
>sp|Q02981|YP109_YEAST ABC1 family protein YPL109C, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YPL109C PE=1
SV=2
Length = 657
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 234/484 (48%), Gaps = 76/484 (15%)
Query: 177 SLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFR------------ELWLHVVLRTL 224
++VE V ++R L + +F P +++ P + FG + + +W ++ + L
Sbjct: 111 NIVEPVCTILRFLEISAIFLPLLLLYPIS-WFGHKLKITDTNITETRGSLIWCQLLRKAL 169
Query: 225 ETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG-RRLSEI 283
E AGP+FIK GQWA +R D+F LC +L +LHS HS ++T + + +A ++ +
Sbjct: 170 ELAGPSFIKLGQWAGSRTDIFSHALCHELGKLHSNVTAHSLSFTLEKLSQALKVDKIEDA 229
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVV--------AVKVRHPGVGESIRRD 335
FD F P+ GSIAQV+ L +Y K I + A+K+ HP V IRRD
Sbjct: 230 FDEFNRTPIGVGSIAQVYVGELSQKYI-DKYDNIQIGKDGNRWCAIKILHPNVRSQIRRD 288
Query: 336 FVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVS 395
I+ A + IP ++WL L V QF++ M Q+DL EA +L RF NF+ V
Sbjct: 289 LKIMKFCADAINWIPTMEWLSLPSEVDQFSILMNIQLDLRIEALNLERFNENFKNSIQVK 348
Query: 396 FPKPVYPLVHPAVLVETYEQGECVSRYVDELQ--GHERLKSALAHIGTHALLKMLLVDNF 453
FPKP PL + V+ E + G + +++ + L ++ A L+ML++D+F
Sbjct: 349 FPKPFLPLSNRDVMFEEHVYGLSMEKFLSTKKQINDVELCKKVSDPFVDAFLQMLILDDF 408
Query: 454 IHADMHPGNILVRVAQK-------------------------KSSQKRLFRSK------- 481
+HAD+HPGN+++R + + Q + F K
Sbjct: 409 VHADLHPGNVIIRFVKTNKYGTNIISSELESYRITHDLRKKIEEDQDQDFVGKLKSVLTN 468
Query: 482 --PHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIE 539
P + F+D G+ EL++ +R+N + F A+AR DG A E + S+ P+ I+
Sbjct: 469 YTPQICFIDTGIITELNEKNRINFIALFNALARFDGYRAGELMIERSR-----TPETAID 523
Query: 540 EVDEAFAFWGTPEGDLVHP----------AECMQQLLEKVRRHRVNVDGNVCTVMVTTLV 589
+ E FAF D V + + Q+L VR H V ++ + +V+V L+
Sbjct: 524 K--EVFAFKVEKLVDKVKQRTFTLGTVSIGDLLDQMLSMVRSHHVRMESDFVSVVVAILL 581
Query: 590 LEVI 593
LE I
Sbjct: 582 LEGI 585
>sp|Q9P7M0|YOS3_SCHPO ABC1 family protein C21C3.03, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC21C3.03 PE=3 SV=2
Length = 692
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/473 (30%), Positives = 223/473 (47%), Gaps = 69/473 (14%)
Query: 184 LLMRALYLGVLFSPSIMMAPFA--------DSFGPQFRELWLHVVLRTLETAGPAFIKWG 235
+L+R+ L ++FSP I+ PF S +WL ++ LE AG FIK G
Sbjct: 154 ILLRSFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLRFLVTQLERAGATFIKLG 213
Query: 236 QWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG-RRLSEIFDGFEEAPVAS 294
QWAA+R DLFP CK LS+LHS HS AYT+ I + + + EIF F P+
Sbjct: 214 QWAASRTDLFPPAFCKTLSKLHSHVTPHSLAYTQSVICKTYKVESIEEIFVNFNPIPIGV 273
Query: 295 GSIAQVHRASLR-------------------FRYPGQKVKPIV--VAVKVRHPGVGESIR 333
G+IAQV+ A+++ FR P+ VA+KV HP V + I
Sbjct: 274 GAIAQVYTATIKKAATQQDNSYFTSMLQSIGFRQKNISDAPVTQDVAIKVLHPNVEKYIS 333
Query: 334 RDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKD 393
D I+ AK+ +++P++KWL L + V+ F + Q++L EA HL++F NFR +
Sbjct: 334 LDLQILGFFAKLINLVPSMKWLSLPDEVKVFGAMLNQQLNLHYEALHLNQFRLNFRGNRY 393
Query: 394 VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNF 453
V FP P +L+E Y G +S ++ G LA+ G +AL +ML+VDNF
Sbjct: 394 VEFPAPYDDYTTNQILLEDYMPGIPLSAFLKHKSG--PFNKLLANTGNNALFQMLIVDNF 451
Query: 454 IHADMHPGNILVRVAQKKSSQKRLFRS--------------------------------K 481
HAD+HPGN+LV+ K K +F +
Sbjct: 452 THADLHPGNVLVKFY--KGIPKTIFNQDNEINDSIYKILSTCSTEEWDSAMEELNILGYR 509
Query: 482 PHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQ-QNCPNPKAFIEE 540
P ++FLD G+ +LS D+ N ++ F+AV G A + S+Q + N F +
Sbjct: 510 PTLVFLDAGLVTKLSTQDQKNFLDLFQAVLTFHGYEAGLLMVERSRQTERVINKDIFALK 569
Query: 541 VDEAFAFWGTPEGDL--VHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLE 591
++ L + +Q+++ R H V ++ N +++ L++E
Sbjct: 570 MEHLLNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVE 622
>sp|Q7Z695|ADCK2_HUMAN Uncharacterized aarF domain-containing protein kinase 2 OS=Homo
sapiens GN=ADCK2 PE=2 SV=1
Length = 626
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 161/316 (50%), Gaps = 21/316 (6%)
Query: 295 GSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKW 354
GS A V RA + P + I VAVKV HPG+ + D +++ + +++ V+P +KW
Sbjct: 285 GSNAGVSRAQVPGHQP-EATNLISVAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKW 343
Query: 355 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 414
L L E V++F M+ Q+DL EA +L F NFR K V FP P+ P V VLVETYE
Sbjct: 344 LSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYE 403
Query: 415 QGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQ 474
+ VS Y + LK +A +G + LLKM+ VDNF+HAD+HPGNILV+ A SS
Sbjct: 404 ESVPVSSY-QQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILVQGANGLSSS 462
Query: 475 KR-----------LFRSKP------HVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRT 517
+ L + P ++ LD G+ AEL D N F AV G+
Sbjct: 463 QEAQLQQADICDTLVVAVPSSLCPLRLVLLDAGIVAELQAPDLRNFRAVFMAVVMGQGQR 522
Query: 518 AAECTLRLSKQQNCPNPKAFIEEVDEAF--AFWGTPEGDLVHPAECMQQLLEKVRRHRVN 575
AE L ++ C + + F E+ A T + +H + + + + + H+V
Sbjct: 523 VAELILHHARASECRDVEGFKTEMAMLVTQARKNTITLEKLHVSSLLSSVFKLLMTHKVK 582
Query: 576 VDGNVCTVMVTTLVLE 591
++ N +++ +VLE
Sbjct: 583 LESNFASIVFAIMVLE 598
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 210 PQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTK 269
P LWLH++L+ ET+GP +IK GQWA+TR DLF C + S+LH + H + +T+
Sbjct: 124 PSVSTLWLHLLLKATETSGPTYIKLGQWASTRRDLFSEAFCAQFSKLHVRVTPHPWTHTE 183
Query: 270 KTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRA 303
+ + +AFG I PV SG +AQV++A
Sbjct: 184 RFLRQAFGDDWGSILSFENREPVGSGCVAQVYKA 217
>sp|Q6NSR3|ADCK2_MOUSE Uncharacterized aarF domain-containing protein kinase 2 OS=Mus
musculus GN=Adck2 PE=2 SV=1
Length = 617
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 152/296 (51%), Gaps = 24/296 (8%)
Query: 317 IVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAR 376
I VAVKV HPG+ + D +++ + +K ++P VKWL L E V++F M+ Q DL
Sbjct: 297 IPVAVKVLHPGLLSQVSMDLLLMKIGSKALGLLPGVKWLSLPEIVEEFEKLMVQQTDLRY 356
Query: 377 EAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSAL 436
EA +L F +NF+ V FP P+ PL+ +LVETYE+ VS Y + LK +
Sbjct: 357 EAQNLEHFQHNFQDMASVKFPTPLRPLITRDILVETYEESVPVSSY-QQAGIPTDLKRKI 415
Query: 437 AHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHV------------ 484
A +G + LLKM+ VDNF+H D+HPGNILV+ A S + + + +V
Sbjct: 416 AQLGINMLLKMIFVDNFVHGDLHPGNILVQGADGVSPSLEMQQQQVNVCDTLVATIAPAL 475
Query: 485 -----IFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIE 539
+ LD G+ A+L +D N F+AV G AE L ++ C + + F
Sbjct: 476 CPLRLVLLDAGIVAKLQASDLRNFRAVFQAVVMGQGHRVAELMLHHAQANECRDVERFKA 535
Query: 540 E----VDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLE 591
E V +A T E +H + + + + + H+V ++ N +++V +VLE
Sbjct: 536 EMATLVTQARKNIVTLEK--LHVSSLLSSVFKLLMTHKVKLESNFASIVVAIMVLE 589
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 181 CVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAAT 240
C+ L +RA L F P + + P P LWLH++ + ET+GP +IK GQWA+T
Sbjct: 96 CLRLGLRAGVLLAKFFPLLFLYPLT-YLAPGLSTLWLHLLFKATETSGPTYIKLGQWAST 154
Query: 241 RPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQV 300
R DLF C + S+LH + H +A T+ +++AFG + PV SG +AQV
Sbjct: 155 RRDLFSEAFCTQFSKLHVQVTPHPWARTEYLLQQAFGEDWGSLLFFETREPVGSGCVAQV 214
Query: 301 HRA 303
++A
Sbjct: 215 YKA 217
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 155/306 (50%), Gaps = 27/306 (8%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ +L+ L + P TIERAF R + E
Sbjct: 56 ALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGE 115
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN-L 341
+F FE PVAS SIAQVH A +R R+ ++ VAVKV PG+ I D ++ +
Sbjct: 116 VFVSFERVPVASASIAQVHFAIVRDRHGVER----EVAVKVLRPGMLPVIDNDLGLMRAM 171
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + S+ K L+ + V +F ++ ++DL REAA+ ++ N R V P+ ++
Sbjct: 172 AGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILW 231
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSA------LAHIGTHALLKMLLVDNFIH 455
HP VLV +G +S+ ERL++A LA G + D F H
Sbjct: 232 DFCHPEVLVMERMKGVPISQI-------ERLRAAGVDIRQLARDGVTIFFTQVFRDGFFH 284
Query: 456 ADMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDG 515
ADMHPGNI +V+ + S R I LD G+ L++ D+ L + F A RRD
Sbjct: 285 ADMHPGNI--QVSLEPGSFGR-------YISLDFGIVGSLTEFDKEYLAQNFTAFFRRDY 335
Query: 516 RTAAEC 521
+ AE
Sbjct: 336 KRVAEL 341
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 168/357 (47%), Gaps = 33/357 (9%)
Query: 186 MRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLR------------------TLETA 227
MR Y G+ + + F++ WL VV R LE
Sbjct: 1 MRRFYRGIFIVWVALRYGLDELVLTSFQKPWLRVVARIVSIGRNLDAPRGQRLREALERL 60
Query: 228 GPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGF 287
GP F+K+GQ +TR DL P D+ +L+ L + P A TIERAF R + ++F F
Sbjct: 61 GPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQF 120
Query: 288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAK-IS 346
+E P+AS SIAQVH A++R + + VAVKV P + I +D ++ + A +
Sbjct: 121 DETPIASASIAQVHFATIR----TDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVE 176
Query: 347 SVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP 406
+ P K L+ E V +F ++ ++DL REAA+ ++ N + V P+ + HP
Sbjct: 177 KLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWDFCHP 236
Query: 407 AVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVR 466
V+V G +++ +D L+ LA G + D F HADMHPGNI V
Sbjct: 237 EVIVMERMNGVPIAQ-LDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVS 295
Query: 467 VAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTL 523
+A + + I LD G+ L+++D+ L + F A RRD + AE L
Sbjct: 296 LAPETFGR---------YISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHL 343
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 159/335 (47%), Gaps = 45/335 (13%)
Query: 212 FRELWLHVVLRT------------------LETAGPAFIKWGQWAATRPDLFPRDLCKKL 253
FR+ WL V R LE+ GP F+K+GQ +TR DL P D+ +L
Sbjct: 27 FRQPWLRAVTRVITFGRKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADEL 86
Query: 254 SELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK 313
+ L + P TIERAF R + E+F F+ PVAS SIAQVH A +R R +
Sbjct: 87 ALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAR 146
Query: 314 VKPIVVAVKVRHPGVGESIRRDFVIINLAAK-ISSVIPAVKWLRLDESVQQFAVFMMSQV 372
VAVKV PG+ I +D ++ + A + S+ K L+ E V +F ++ ++
Sbjct: 147 ----EVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGKRLKPREVVAEFDNYLHDEL 202
Query: 373 DLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERL 432
DL REAA+ ++ N + V P+ + H VLV +G +++ ERL
Sbjct: 203 DLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQV-------ERL 255
Query: 433 KSA------LAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHVIF 486
+SA LA G + D F HADMHPGNI V +A + + I
Sbjct: 256 RSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR---------YIS 306
Query: 487 LDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
LD G+ L++ D+ L + F A RRD + AE
Sbjct: 307 LDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAEL 341
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 157/329 (47%), Gaps = 33/329 (10%)
Query: 212 FRELWLHVVLRT------------------LETAGPAFIKWGQWAATRPDLFPRDLCKKL 253
FR+ WL V R LE+ GP F+K+GQ +TR DL P D+ +L
Sbjct: 27 FRQPWLRAVTRVITFGRKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADEL 86
Query: 254 SELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK 313
+ L + P TIERAF R + E+F F+ PVAS SIAQVH A +R R +
Sbjct: 87 ALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAR 146
Query: 314 VKPIVVAVKVRHPGVGESIRRDFVIINLAAK-ISSVIPAVKWLRLDESVQQFAVFMMSQV 372
VAVKV PG+ I +D ++ + A + S+ K L+ E V +F ++ ++
Sbjct: 147 ----EVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGKRLKPREVVAEFDNYLHDEL 202
Query: 373 DLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERL 432
DL REAA+ ++ N + V P+ + H VLV +G +++ VD L+
Sbjct: 203 DLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQ-VDRLRSAGVD 261
Query: 433 KSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMT 492
LA G + D F HADMHPGNI V +A + + I LD G+
Sbjct: 262 IPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR---------YISLDFGIV 312
Query: 493 AELSKTDRVNLVEFFKAVARRDGRTAAEC 521
L++ D+ L + F A RRD + AE
Sbjct: 313 GTLTEFDKEYLAQNFTAFFRRDYKRVAEL 341
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 177/379 (46%), Gaps = 35/379 (9%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE GP F+K+GQ +TR DL P D+ ++L+ L + P TIERAF ++L +I
Sbjct: 57 LEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKKLDQI 116
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F FE PVAS SIAQVH A + R Q+ VAVKV PG+ I +D ++++ A
Sbjct: 117 FVSFEREPVASASIAQVHFAVISDRNGVQR----DVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 344 K-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + + K L+ + V +F ++ ++DL REA++ ++ N V P+ +
Sbjct: 173 RWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVYWD 232
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSA------LAHIGTHALLKMLLVDNFIHA 456
V+V G +S+ ERL+ A LA G + D F HA
Sbjct: 233 FCRSDVMVMQRMTGVPISQV-------ERLREAGVDIPKLARDGVTIFFTQVFRDGFFHA 285
Query: 457 DMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGR 516
DMHPGNI+V + + + I LD G+ L++ D+ L + F A RRD +
Sbjct: 286 DMHPGNIMVSLEPETFGR---------YISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYK 336
Query: 517 TAAECTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRH 572
AE L + P ++E++ A P D + + +L + RR
Sbjct: 337 RVAE----LHIESGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRF 392
Query: 573 RVNVDGNVCTVMVTTLVLE 591
+V + + + T L +E
Sbjct: 393 QVEIQPQLVLLQKTLLNIE 411
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 396 QPQLVLLQKTMLNVE 410
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 148/299 (49%), Gaps = 19/299 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE GP F+K+GQ +TR DL P DL +L L K P + + IE + +S
Sbjct: 57 RALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSPVS 116
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL 341
E+F F+ P+AS SIAQVH A+L+ G++ V VKV PG+ ++IR D ++ L
Sbjct: 117 ELFADFQTYPMASASIAQVHAATLK---NGKE-----VVVKVIRPGIEKTIRLDIALMLL 168
Query: 342 AAK-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
A+ + + K L E V+ + ++ ++DL REAA+ S+ NF + + P+
Sbjct: 169 VARLVENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELIYIPEVY 228
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ + H VLV G ++ V++L+ LA G + D+F HADMHP
Sbjct: 229 WEMTHSRVLVMERIYGVPIAD-VEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHP 287
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAA 519
GNI V V+ + P I +D G+ L+ D+ L A RRD R A
Sbjct: 288 GNIFVDVSNP---------ANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVA 337
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 175/375 (46%), Gaps = 25/375 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ +L++L + P +ER+ G+ LS
Sbjct: 56 ALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKPLSA 115
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NL 341
+F F+ PVAS SIAQVH A+LR G VAVKV PG+ I D ++ ++
Sbjct: 116 LFHRFDHHPVASASIAQVHFATLR----GGPDDGREVAVKVLRPGMLPVIDSDLALMRDV 171
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + + K L+ E V +F ++ ++DL REAA+ S+ NF + + + P+ +
Sbjct: 172 ATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEVFW 231
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
V V G VS + DEL+ LA G + D F HADMHPG
Sbjct: 232 DWCTSEVFVMERMHGVRVS-HADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPG 290
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NILV VA + S I LD G+ LS+ D+ L + F A +RD A
Sbjct: 291 NILVSVAPE---------SLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVA-- 339
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNV 576
L + + +EE++ A ++ P G+ + + +L + RR V V
Sbjct: 340 --LLHVESGWAPEETRVEELEGAIRACCEPYFDRPLGE-ISLGLVLMRLFQTSRRFNVEV 396
Query: 577 DGNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 397 QPQLVLLQKTLLNVE 411
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 144/298 (48%), Gaps = 23/298 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE+ GP FIK+GQ +TRPDL P D +L++L K P +++ IE++ G+ + +
Sbjct: 57 ALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEK 116
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
++ FE P+AS SIAQVH+A L + G++ VAVKV P + I +D ++
Sbjct: 117 LYAEFETEPIASASIAQVHKARL---HSGEQ-----VAVKVLRPNLLPVIEQDLSLMRFG 168
Query: 343 AK-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + + K L+ E V +F ++ ++DL REAA+ S+ NF+ + PK Y
Sbjct: 169 AGWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFY 228
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
VL + G VS + +L+ LA G + D F HADMHPG
Sbjct: 229 DYCTSDVLTIEWMDGTPVSD-IAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPG 287
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAA 519
NILV + I LD G+ L+ D+ L F A RD R A
Sbjct: 288 NILVAADNR-------------YIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVA 332
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 145/300 (48%), Gaps = 19/300 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ +L++L + P ++ + ++ GR + E
Sbjct: 56 ALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRPIEE 115
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ PVAS SIAQVH L + G++ VAVKV P V I D ++ +A
Sbjct: 116 VFASFDADPVASASIAQVHFGVL---HDGRE-----VAVKVLRPNVLNIIEADLALLRVA 167
Query: 343 AK-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + + P + LR E V +F ++ ++DL REAA+ ++ N + P+ ++
Sbjct: 168 AAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIW 227
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
L VLV G +S+ ++ L+ LA G + D F HADMHPG
Sbjct: 228 DLSSAEVLVMERMHGVPISQ-IETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPG 286
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI+V A + I LD G+ L D+ L + F A RRD R AE
Sbjct: 287 NIMVSTAPATFGR---------YIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAEL 337
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 170/384 (44%), Gaps = 29/384 (7%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
E GP FIK+GQ +TR DL P DL ++L+ L + P ++ IE+A G+ + +
Sbjct: 61 FEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQALGQPIEAL 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F F++ P+AS S+AQVH A L K + +KV P + I D ++ L A
Sbjct: 121 FADFDQQPLASASVAQVHTARL-------KENNAEIVIKVIRPDIKPVINDDIRLMRLCA 173
Query: 344 KISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPL 403
KI + + LR E ++++ ++ +++L EAA+ + NF + P
Sbjct: 174 KIVAFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYSDY 233
Query: 404 VHPAVLVETYEQGECVS-RYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
+VLV G VS R E G + LK LA G + D+F HADMHPGN
Sbjct: 234 CRESVLVMERIYGIPVSDRAALEANGTD-LK-LLAERGVEVFFTQVFRDSFFHADMHPGN 291
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
+ V P I +D G+ L++ D+ L E F A RD R AE
Sbjct: 292 VFVSYEHPHD---------PQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAE-- 340
Query: 523 LRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNVD 577
L Q P +EE + A + P ++ + + L RR ++V
Sbjct: 341 --LHVQSGWVPPDTKVEEFESALRTVLEPIFAKPLAEISF-GQVLLNLFNTARRFNMHVQ 397
Query: 578 GNVCTVMVTTLVLEVIISYFFSQL 601
+ + T L +E + + + QL
Sbjct: 398 PQLVLLQKTLLYIEGLGRHLYPQL 421
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 143/298 (47%), Gaps = 23/298 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE+ GP FIK+GQ +TRPDL P D +L++L K P +++ IE++ G+ + +
Sbjct: 57 ALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEK 116
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL- 341
++ FE P+AS SIAQVH+A L + G++ VAVKV P + I +D ++
Sbjct: 117 LYAEFETEPIASASIAQVHKARL---HSGER-----VAVKVLRPNLLPLIEQDLSLMRFG 168
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
AA + + + L+ E V +F ++ ++DL REAA+ + NF + PK Y
Sbjct: 169 AAWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFY 228
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
VL + G V+ + +L+ LA G + D F HADMHPG
Sbjct: 229 DYCTSDVLTIEWMDGTPVAD-IAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPG 287
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAA 519
NILV + I LD G+ L+ D+ L F A RD R A
Sbjct: 288 NILVAADNR-------------YIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVA 332
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 170/374 (45%), Gaps = 23/374 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE+ GP F+K+GQ +TR DL P D+ +L++L + P A + +E A G +
Sbjct: 55 ALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAPVDV 114
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NL 341
+FD FE PVAS SIAQVH A+++ GQ VAVKV P + I D ++ ++
Sbjct: 115 LFDDFERVPVASASIAQVHFATVK---AGQHAGK-AVAVKVLRPNMLPVIDSDLALLRDI 170
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + K L+ E V +F ++ ++DL REAA+ S+ NF + P+ +
Sbjct: 171 AVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
P VLV G +S+ V+ L+ LA G + D F HADMHPG
Sbjct: 231 EFCTPTVLVMERMVGVPISQ-VETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V + + I LD G+ LS D+ L + F A +RD A
Sbjct: 290 NIQVSLDPAHFGR---------YIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVA-- 338
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVD 577
TL L P + +EE++ A P D + + + +L RR V +
Sbjct: 339 TLHLESGWVPPTTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQ 396
Query: 578 GNVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 397 PQLVLLQKTMLNVE 410
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 139/303 (45%), Gaps = 19/303 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK GQ +TR DLFP D+ +L+ L + + IE+A G L
Sbjct: 61 LQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVDPFDGKIARAQIEKALGAPLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYP--GQKVKPIVVAVKVRHPGVGESIRRDFVIINL 341
FD F E +AS SIAQVH A + P ++ V +KV P + + I D ++L
Sbjct: 121 FDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMINAD---LSL 177
Query: 342 AAKISSVIPAVKW----LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFP 397
K++S IP +K LR E V+++ + ++DL RE A+ + NF + P
Sbjct: 178 MYKVASWIPRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFENSPMLYIP 237
Query: 398 KPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHAD 457
+ H V+V G VS ++EL + LA G + D+F HAD
Sbjct: 238 EMYKQFCHQTVIVMERIYGIPVSN-IEELHANGTNMKLLAERGVQVFFTQVFRDSFFHAD 296
Query: 458 MHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRT 517
MHPGNI V A P I +D G+ L+ D+ L E F A RD R
Sbjct: 297 MHPGNIFVNRAHP---------DDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYRR 347
Query: 518 AAE 520
AE
Sbjct: 348 VAE 350
>sp|C5BCA6|UBIB_EDWI9 Probable ubiquinone biosynthesis protein UbiB OS=Edwardsiella
ictaluri (strain 93-146) GN=ubiB PE=3 SV=1
Length = 543
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 168/383 (43%), Gaps = 26/383 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+T GP +IK+GQ +TR DLF + +L+ L + A ++ IE + G L +
Sbjct: 61 LQTLGPVWIKFGQMLSTRRDLFAPAIADQLALLQDRVAPFDGALARRQIEASLGGPLEQW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD F+ +AS SIAQVH A+LR G++ V +KV P + IR D ++ LA
Sbjct: 121 FDDFDSQALASASIAQVHTATLREN--GRE-----VVLKVIRPDIQPIIRADVRLMYRLA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ ++P + LR E V+++ ++ +++L REAA+ + NF + P+
Sbjct: 174 GWVPKLLPDGRRLRPREVVREYEKTLLDELNLLREAANAIQLRRNFDASPMLYIPEVFSD 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
+VLV G VS + L+ LA G + D+F HADMHPGN
Sbjct: 234 YCRESVLVMERIYGVPVSD-IAALRAQNTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPQD---------PQYIGIDCGIVGSLNKADKRYLAENFIAFFNRDYRKVAE-- 341
Query: 523 LRLSKQQNCPNPKAFIEEVDEAFAFWGTP----EGDLVHPAECMQQLLEKVRRHRVNVDG 578
L P IEE + A P D + + L RR + V
Sbjct: 342 --LHVDSGWVPPDTNIEEFEFAIRTVCEPIFEKPLDQISFGHVLLNLFNTARRFNMEVQP 399
Query: 579 NVCTVMVTTLVLEVIISYFFSQL 601
+ + T L +E + + QL
Sbjct: 400 QLVLLQKTLLYVEGLGRQLYPQL 422
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 170/373 (45%), Gaps = 23/373 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE+ GP F+K+GQ +TR DL P D+ +L++L + P A +E++ G + +
Sbjct: 56 LESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAPVDVL 115
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLA 342
FD FE PVAS SIAQVH A+++ GQ VAVKV P + I D ++ ++A
Sbjct: 116 FDDFERVPVASASIAQVHFATVK---AGQHAGK-AVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ K L+ E V +F ++ ++DL REAA+ S+ NF + P+ +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWE 231
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
P VLV G +S+ V+ L+ LA G + D F HADMHPGN
Sbjct: 232 FCTPTVLVMERMVGVPISQ-VETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + + I LD G+ LS D+ L + F A +RD A T
Sbjct: 291 IQVSLDPAHFGR---------YIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVA--T 339
Query: 523 LRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVDG 578
L L P + +EE++ A P D + + + +L RR V +
Sbjct: 340 LHLESGWVPPTTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQP 397
Query: 579 NVCTVMVTTLVLE 591
+ + T L +E
Sbjct: 398 QLVLLQKTMLNVE 410
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 141/299 (47%), Gaps = 18/299 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP +IK+GQ +TR DLFP + +L+ L K A KK IE + G +
Sbjct: 60 ALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSLGAPVES 119
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINL 341
FD F+ P+AS SIAQVH A+L+ G++ V +KV P + I+ D +I L
Sbjct: 120 QFDDFDIVPLASASIAQVHTATLKEN--GRE-----VVIKVIRPDILPVIKADMKLIYRL 172
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + ++P + LR E V + ++ +++L REAA+ + NF + + P+
Sbjct: 173 ARWVPRLLPDGRRLRPQEVVADYEKTLLDELNLLREAANAIQLRRNFADGQMLYVPEIYS 232
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
+LV G +S V L+ H LA G + D+F HADMHPG
Sbjct: 233 DYCSENMLVMERIYGIPISD-VATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPG 291
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
NI V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 292 NIFVSYEHPED---------PQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAE 341
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 168/385 (43%), Gaps = 29/385 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ + L +L + P + IE++ G +SE
Sbjct: 58 ALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSE 117
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL- 341
+F F P+AS S+AQVH A+L GQK V VKV PG+ + IR+D ++ L
Sbjct: 118 LFAEFSPDPMASASVAQVHAATLPN---GQK-----VVVKVLRPGIEKVIRQDLGLMYLM 169
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + K L E V + + ++DL REAA+ S+ NF + P +
Sbjct: 170 AGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDW 229
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
+VLV G ++ V L+ LA G + D+F HADMHPG
Sbjct: 230 DYTRKSVLVMERIHGIPIAD-VPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPG 288
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V V+ + P I +D G+ L+ D+ L A RRD R A+
Sbjct: 289 NIFVDVSNP---------ADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQ- 338
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNV 576
L Q P+ + E + A + P D+ + +L + RR + V
Sbjct: 339 ---LHIQSGWVPPETRVNEFEAAIRTVCEPIFERPLKDISF-GHFLLRLFQTARRFNMEV 394
Query: 577 DGNVCTVMVTTLVLEVIISYFFSQL 601
+ + T L +E + + L
Sbjct: 395 QPQLVLLQKTLLNVEGLGRQLYPDL 419
>sp|Q7MZ83|UBIB_PHOLL Probable ubiquinone biosynthesis protein UbiB OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=ubiB PE=3
SV=1
Length = 545
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 140/298 (46%), Gaps = 18/298 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK+GQ +TR DLFP + +L+ L + A ++ IE A G L
Sbjct: 61 LQELGPVWIKFGQMLSTRRDLFPPAIADQLALLQDRVASFDGALARQYIETALGGALETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD FE +AS SIAQVH A R + GQ+ + +KV P + I+ D ++ LA
Sbjct: 121 FDDFEPIALASASIAQVHTA--RLKENGQE-----IVIKVIRPDILPIIKADIRLMYRLA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ ++P + LR E V+++ ++ +++L REAA+ + NF + P+
Sbjct: 174 NWVPMLLPDGRRLRPREVVREYEKTLIDELNLLREAANAIQLRRNFENSSTLYVPEIYSD 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
VLV G VS ++ L+ LA G + D+F HADMHPGN
Sbjct: 234 YCRENVLVMERVYGIPVSD-IEALEAQNTNMRLLAERGVQVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
I V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPED---------PFYIGIDYGIVGSLNKDDKRYLAENFIAFFNRDYRKVAE 341
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 170/384 (44%), Gaps = 30/384 (7%)
Query: 225 ETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIF 284
E GP FIK+GQ +TR DL P D+ ++L+ L + P ++ IE + G + +F
Sbjct: 62 EALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLF 121
Query: 285 DGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN-LAA 343
D F+E P+AS SIAQVH A R + G++ + +KV P + I D ++ LA
Sbjct: 122 DDFDETPLASASIAQVHTA--RLKENGRE-----IVIKVIRPDIEPVIEADLRLMQALAR 174
Query: 344 KISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPL 403
++ +P LR E V+++ ++ +++L REAA+ + NF + + P+
Sbjct: 175 LVARFVPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVFTEH 234
Query: 404 VHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNI 463
VLV G VS + L+ + LA G + D+F HADMHPGNI
Sbjct: 235 CREQVLVMERIYGIPVSD-IAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNI 293
Query: 464 LVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTL 523
V ++ P I +D G+ L++ D+ L E F A RD R AE
Sbjct: 294 FVSYEHPEN---------PLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAE--- 341
Query: 524 RLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHP------AECMQQLLEKVRRHRVNVD 577
L + P ++E + FA E P + L RR + V
Sbjct: 342 -LHVESGWVPPDTKVDEFE--FAIRTVLEPIFEKPLSEISFGHVLLNLFNTARRFNMQVQ 398
Query: 578 GNVCTVMVTTLVLEVIISYFFSQL 601
+ + T L +E + + QL
Sbjct: 399 PQLVLLQKTLLYVEGLGRQLYPQL 422
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 141/296 (47%), Gaps = 34/296 (11%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE+ GP F+K+GQ +TR DL P + +L+ L + P ++ +ER+ GR++ E+
Sbjct: 56 LESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEEL 115
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLA 342
F F+ PVAS S+AQVH+A LR G+ + VAVKV PG+ I +D ++ LA
Sbjct: 116 FVDFDLKPVASASVAQVHKAWLRQPDGGRGRE---VAVKVLRPGILPVIEQDLSLMRTLA 172
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + K L+ E V +F ++ ++D+ EAA+ S+ NF+ + P+ Y
Sbjct: 173 GWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYD 232
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSA------LAHIGTHALLKMLLVDNFIHA 456
VL + G V + ERL+ A L+ G + F HA
Sbjct: 233 YSSREVLTLEWMHGIPVGQI-------ERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHA 285
Query: 457 DMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFK 508
DMHPGNI V + I LD G+ L+ TD+ VN + FF
Sbjct: 286 DMHPGNIFVAADGR-------------YIALDFGIVGSLTDTDKHYLAVNFLAFFN 328
>sp|Q2NWT9|UBIB_SODGM Probable ubiquinone biosynthesis protein UbiB OS=Sodalis
glossinidius (strain morsitans) GN=ubiB PE=3 SV=1
Length = 544
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 174/389 (44%), Gaps = 39/389 (10%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK+GQ +TR DLFP + +L+ L + A + IER+ G+ L
Sbjct: 61 LQELGPVWIKFGQMLSTRRDLFPPAIADQLAMLQDRVQPFDGALARAHIERSMGQPLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD F++ P+AS SIAQVH A L+ GQ+ V +KV P + I+ D ++ LA
Sbjct: 121 FDDFQQEPLASASIAQVHTARLK---NGQE-----VVIKVIRPDILPMIKADMRLMYRLA 172
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + ++P + LR E V ++ ++ +++L REAA+ + NF D S P P
Sbjct: 173 SWVPHLLPDGRRLRPVEVVLEYEKTLLDELNLLREAANAIQLRRNF----DGS-PMLYIP 227
Query: 403 LVHPAVLVETYEQGECVSRY-VDELQGHERLKSA---LAHIGTHALLKMLLVDNFIHADM 458
V+P ET E + V+++ E+ + LA G + D+F H DM
Sbjct: 228 EVYPDYCSETMMVMERIYGVPVNDVAALEKQGTNMKLLAERGVQVFFTQVFRDSFFHGDM 287
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTA 518
HPGNI V ++ P I +D G+ L+K D+ L E F A RD R
Sbjct: 288 HPGNIFVSFEHPEN---------PQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKV 338
Query: 519 AECTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHP------AECMQQLLEKVRRH 572
AE L P +E+ + FA E P + L RR
Sbjct: 339 AE----LHVDSGWVPPDTNVEDFE--FAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRF 392
Query: 573 RVNVDGNVCTVMVTTLVLEVIISYFFSQL 601
+ V + + T L +E + + QL
Sbjct: 393 NMEVQPQLVLLQKTLLYIEGVGRQLYPQL 421
>sp|A8G8C0|UBIB_SERP5 Probable ubiquinone biosynthesis protein UbiB OS=Serratia
proteamaculans (strain 568) GN=ubiB PE=3 SV=1
Length = 543
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 142/299 (47%), Gaps = 18/299 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK+GQ +TR DLFP + +L+ L + A +K IE A G L
Sbjct: 61 LQELGPVWIKFGQMMSTRRDLFPPQIADQLTLLQDRVAPFDGALARKHIELAMGGPLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD F++ +AS SIAQVH A R + GQ+ V +KV P + I+ D ++ LA
Sbjct: 121 FDDFDQQALASASIAQVHTA--RLKTTGQE-----VVLKVIRPDIRPIIKADVRLMYRLA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
A + ++P + LR E V+++ ++ +++L REAA+ + NF + P+
Sbjct: 174 AWVPKLMPDGRRLRPREVVREYEKTLLDELNLLREAANAIQLRRNFDGSPMLYVPEVYSD 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
+VLV G VS + L+ LA G + D+F HADMHPGN
Sbjct: 234 YCRESVLVMERIYGIPVSD-IPTLEKQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
I V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPED---------PCYIGIDCGIVGSLNKDDKRYLAENFIAFFNRDYRKVAEL 342
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 144/307 (46%), Gaps = 33/307 (10%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ +
Sbjct: 63 ALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQ 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVI 338
+F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 123 VFARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 339 INLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPK 398
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 175 ARLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQ 231
Query: 399 PVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADM 458
+ P VLV G V+ ++ L+ ALA G + D+F HADM
Sbjct: 232 VYWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADM 290
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRV----NLVEFFKAVARRD 514
HPGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 291 HPGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RD 337
Query: 515 GRTAAEC 521
R A+
Sbjct: 338 YRKVAQL 344
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 144/307 (46%), Gaps = 33/307 (10%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ +
Sbjct: 63 ALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQ 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVI 338
+F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 123 VFARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 339 INLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPK 398
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 175 ARLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQ 231
Query: 399 PVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADM 458
+ P VLV G V+ ++ L+ ALA G + D+F HADM
Sbjct: 232 VYWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADM 290
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRV----NLVEFFKAVARRD 514
HPGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 291 HPGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RD 337
Query: 515 GRTAAEC 521
R A+
Sbjct: 338 YRKVAQL 344
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 144/306 (47%), Gaps = 33/306 (10%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ ++
Sbjct: 64 LQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQV 123
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVII 339
F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 124 FARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFILA 175
Query: 340 NLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKP 399
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 176 RLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQV 232
Query: 400 VYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMH 459
+ P VLV G V+ ++ L+ ALA G + D+F HADMH
Sbjct: 233 YWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMH 291
Query: 460 PGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRV----NLVEFFKAVARRDG 515
PGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 292 PGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RDY 338
Query: 516 RTAAEC 521
R A+
Sbjct: 339 RKVAQL 344
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 144/307 (46%), Gaps = 33/307 (10%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ +
Sbjct: 63 ALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQ 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVI 338
+F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 123 VFARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 339 INLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPK 398
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 175 ARLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQ 231
Query: 399 PVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADM 458
+ P VLV G V+ ++ L+ ALA G + D+F HADM
Sbjct: 232 VYWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADM 290
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRV----NLVEFFKAVARRD 514
HPGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 291 HPGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RD 337
Query: 515 GRTAAEC 521
R A+
Sbjct: 338 YRKVAQL 344
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 141/304 (46%), Gaps = 27/304 (8%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP FIK+GQ +TR DL P D+ +L+ L + P IER G +S+
Sbjct: 62 ALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAPVSQ 121
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ IR+D + L
Sbjct: 122 LFARFDSQPLASASVAQVHAAQLK---SGEE-----VVVKVVRPGLKPVIRQDLAWLFLL 173
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A+I+ A + LR E V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
L VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMK-LLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRV----NLVEFFKAVARRDGRT 517
NI V S P I +D G+ L+ D+ NL+ FFK RD R
Sbjct: 293 NIFVSTRTPWS---------PQYIAIDCGIIGSLTDEDQDYLARNLIAFFK----RDYRK 339
Query: 518 AAEC 521
A+
Sbjct: 340 VAQL 343
>sp|B8F6K1|UBIB_HAEPS Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1
Length = 549
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 18/299 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK GQ +TR DLF +L +L+ L ++ IE A G +L +
Sbjct: 61 LQELGPVWIKLGQMLSTRRDLFEPELADQLALLQDSVEAFDGKLARRLIEEALGDKLEKW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYP--GQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
FD F+E +AS SIAQVH A P G++ V +KV P + I+ D ++
Sbjct: 121 FDDFDETALASASIAQVHIAKFNQNQPLAGKE-----VVLKVLRPEIERVIKDDLALMYR 175
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
LA+ I + + LR E V+++ ++ ++DL +E + R NF + + P+
Sbjct: 176 LASWIPRLNKEGRRLRPVEVVREYEKTLLDELDLRKEMVNAIRLRNNFENSEMLYVPEMY 235
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
H V+V G V+ +DEL+ + LA G + D+F HADMHP
Sbjct: 236 QEFCHKNVIVMERIYGIPVAN-IDELKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHP 294
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAA 519
GNI V ++ P I +D G+ L++ D+ L E F A RD R A
Sbjct: 295 GNIFVNPNHPEN---------PQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVA 344
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 138/299 (46%), Gaps = 19/299 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP FIK+GQ +TR DL P D+ +L+ L + P + + IE G R+ E
Sbjct: 64 LQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGARVDEA 123
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F F+ P+AS S+AQVH A L+ G++ V VKV PG+ IR+D + L A
Sbjct: 124 FARFDSEPLASASVAQVHAAQLK---TGEE-----VVVKVVRPGLKAVIRQDLAWLYLFA 175
Query: 344 KISS-VIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+++ + L L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 176 RLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWD 235
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
P VLV G V+ + LK LA G + D+F HADMHPGN
Sbjct: 236 WCRPKVLVMERIYGVPVTDLAALVDQGTDLK-LLAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
I V Q P I +D G+ L+ D+ L A +RD R A+
Sbjct: 295 IFVSTRQPWD---------PQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQL 344
>sp|A1JIF4|UBIB_YERE8 Probable ubiquinone biosynthesis protein UbiB OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=ubiB PE=3 SV=1
Length = 543
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 140/299 (46%), Gaps = 18/299 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK+GQ +TR DLFP + +L+ L + A +K IE A G L
Sbjct: 61 LQELGPVWIKFGQMMSTRRDLFPPAIADQLALLQDRVAPFDGALARKHIEIAMGGPLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD FE+ +AS SIAQVH A R + GQ+ V +KV P + I+ D ++ LA
Sbjct: 121 FDDFEQEALASASIAQVHTA--RLKENGQE-----VVLKVIRPDILPIIKADVRLMYRLA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ ++P + LR E V+++ ++ +++L REAA+ + NF + P+
Sbjct: 174 GWVPKLLPDGRRLRPREVVREYEKTLLDELNLLREAANAIQLRRNFEDSPMLYIPEVYSD 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
+VLV G VS + L+ LA G + D+F HADMHPGN
Sbjct: 234 YCRESVLVMERIYGIPVSD-IAALEDQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
I V P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPHD---------PLYIGIDCGIVGSLNKADKRYLAENFIAFFNRDYRRVAEL 342
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 178/412 (43%), Gaps = 37/412 (8%)
Query: 187 RALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFP 246
R L L F P I S G + R L+ GP F+K+GQ +TR DL P
Sbjct: 30 RWLRLAKPFVPRISAEIVEQSRGRRLR--------LALQELGPIFVKFGQILSTRRDLVP 81
Query: 247 RDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLR 306
+D+ +L L + + IE A G+ + F F+ P+AS SI+QVH A+L
Sbjct: 82 QDIGDELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLH 141
Query: 307 FRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLAAKISSVIPAVKWLRLDESVQQFA 365
R V VKV P + I D ++ +LA + P +R E V +
Sbjct: 142 DRR--------AVVVKVLRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIE 193
Query: 366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECV-SRYVD 424
+ +++DL RE A+ S + D+ P+ ++ H A V T E+ + S +
Sbjct: 194 TTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWS--HTAERVLTLERMYGIPSDDIA 251
Query: 425 ELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHV 484
L + AL+ G + DNF HAD H GNI V S R +S P
Sbjct: 252 LLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWV-----DSDPAR--KSNPRF 304
Query: 485 IFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIEEVDEA 544
I LD G+ +LS+ D+ L E F A+ +D R AE L + P IEE++ A
Sbjct: 305 IVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAE----LHVEAGWIPPHVRIEELEAA 360
Query: 545 F-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLE 591
++ P + AE M +L RR+++ + + + T L +E
Sbjct: 361 ARSVCEPYFTRPLSQ-ISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIE 411
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 178/412 (43%), Gaps = 37/412 (8%)
Query: 187 RALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFP 246
R L L F P I S G + R L+ GP F+K+GQ +TR DL P
Sbjct: 30 RWLRLAKPFVPRISAEIVEQSRGRRLR--------LALQELGPIFVKFGQILSTRRDLVP 81
Query: 247 RDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLR 306
+D+ +L L + + IE A G+ + F F+ P+AS SI+QVH A+L
Sbjct: 82 QDIGDELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLH 141
Query: 307 FRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLAAKISSVIPAVKWLRLDESVQQFA 365
R V VKV P + I D ++ +LA + P +R E V +
Sbjct: 142 DRR--------AVVVKVLRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIE 193
Query: 366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECV-SRYVD 424
+ +++DL RE A+ S + D+ P+ ++ H A V T E+ + S +
Sbjct: 194 TTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWS--HTAERVLTLERMYGIPSDDIA 251
Query: 425 ELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHV 484
L + AL+ G + DNF HAD H GNI V S R +S P
Sbjct: 252 LLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWV-----DSDPAR--KSNPRF 304
Query: 485 IFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIEEVDEA 544
I LD G+ +LS+ D+ L E F A+ +D R AE L + P IEE++ A
Sbjct: 305 IVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAE----LHVEAGWIPPHVRIEELEAA 360
Query: 545 F-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLE 591
++ P + AE M +L RR+++ + + + T L +E
Sbjct: 361 ARSVCEPYFTRPLSQ-ISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIE 411
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 139/292 (47%), Gaps = 18/292 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
++ GP +IK+GQ +TR DL + ++LS L + P A ++ IE + +
Sbjct: 61 MQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAELKAPIDSL 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD F++ P+AS SI+QVH A+L+ GQ+ V +KV P V +I+ D +++ +A
Sbjct: 121 FDDFDDTPLASASISQVHTATLKSN--GQQ-----VVLKVLRPNVEANIKADLELMLQVA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
++ ++ LR E V+ + ++ +++L EA + ++ NF + P
Sbjct: 174 TWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDALYIPYVYEE 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
L HP ++V G VS ++ L LA G + DNF HADMHPGN
Sbjct: 234 LCHPRLMVMERIDGIPVSD-IEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRD 514
I + R P I LD G+ L++ D+ L E F A RD
Sbjct: 293 IFI---------SREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRD 335
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 138/300 (46%), Gaps = 19/300 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L L + P + K IE G+++SE
Sbjct: 62 ALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKKISE 121
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ I +D + +
Sbjct: 122 VFSRFDVEPLASASVAQVHAAQLK---TGEE-----VVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A+ + + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 174 ARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
P VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMK-MLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V S P I +D G+ L+ D+ L A +RD R A+
Sbjct: 293 NIFVSTVNPWS---------PQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQL 343
>sp|B7VHC3|UBIB_VIBSL Probable ubiquinone biosynthesis protein UbiB OS=Vibrio splendidus
(strain LGP32) GN=ubiB PE=3 SV=1
Length = 544
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 18/305 (5%)
Query: 218 HVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG 277
H + L+ GP +IK+GQ +TR DLFP + +L+ L + K+ +E+A G
Sbjct: 55 HRLRLALQELGPVWIKFGQMMSTRRDLFPPHIADQLALLQDQVAPFDGQLAKRDMEKALG 114
Query: 278 RRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFV 337
RL F F+ P+AS SIAQVH A L+ + + IV +KV P + I D
Sbjct: 115 GRLDNWFTDFDIEPLASASIAQVHTAKLK-----ESGREIV--LKVIRPDIRPVIDADLK 167
Query: 338 IINLAAKI-SSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSF 396
+++ A+I + +P + L+ E V ++ ++ ++DL REAA+ + NF +++
Sbjct: 168 LMHRMARIVAKSLPEARRLKPVEVVHEYEKTLLDELDLRREAANAIQLRRNFEGSEELYV 227
Query: 397 PKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHA 456
P+ + L ++V G VS ++ L+ + LA G + D+F HA
Sbjct: 228 PEVIPDLSSETLMVSERIYGIQVSD-IETLEANGTNMKLLAERGVTVFFTQVFRDSFFHA 286
Query: 457 DMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGR 516
DMHPGN+ V + P I LD G+ L+ D+ L E A RD R
Sbjct: 287 DMHPGNVFVNPENPDN---------PQWIGLDCGIVGTLNSEDKRYLAENLLAFFNRDYR 337
Query: 517 TAAEC 521
AE
Sbjct: 338 KVAEL 342
>sp|Q7VN62|UBIB_HAEDU Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=ubiB PE=3 SV=1
Length = 542
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 132/299 (44%), Gaps = 18/299 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK GQ ATR DLF L +L+ L +K IE+A G L
Sbjct: 61 LQELGPVWIKLGQMLATRRDLFEPALADQLALLQDSVAPFDGKLARKIIEQALGNTLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYP--GQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
FD F+E +AS SIAQVH A+ P GQ V +KV P + I+ D ++
Sbjct: 121 FDDFDEQALASASIAQVHTATFNKNQPLAGQN-----VVLKVIRPDIEHIIKADIALMYQ 175
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
LA I + K LR E V+++ ++ ++DL RE A+ R NF + + P
Sbjct: 176 LAKLIPYLSDDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFENSEMLYVPAMY 235
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
H V+V G VS + +K LA G + D+F HADMH
Sbjct: 236 PDFCHKNVIVMERIYGIPVSDIATLTENGTNMK-LLAERGVQVFFTQVFRDSFFHADMHA 294
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAA 519
GNI V + P I +D G+ L++ D+ L E F A RD R A
Sbjct: 295 GNIFVNPNHPED---------PQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVA 344
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 170/387 (43%), Gaps = 33/387 (8%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L L + P + IE G ++ E
Sbjct: 63 ALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAKVGE 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++V VKV PG+ I +D + L
Sbjct: 123 VFSRFDVEPLASASVAQVHAARLK---SGEEV-----VVKVVRPGLKPVIAQDLAWLFLI 174
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
AK + A + L E V + + ++DL REAA+ S+ NF + + P+ +
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYW 234
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
L P VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMATLADQRTDMK-MLAERGVEVFFTQVFRDSFFHADMHPG 293
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRV----NLVEFFKAVARRDGRT 517
NI V + S P I +D G+ L+ D+ NL+ FFK RD R
Sbjct: 294 NIFVSTVKPWS---------PQYIAIDCGIVGSLTAEDQDYLARNLIAFFK----RDYRR 340
Query: 518 AAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRV 574
A+ + + Q +A I V E + P D+ + + +L + RR +
Sbjct: 341 VAQLHIDSGWVPAQTKVNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNM 397
Query: 575 NVDGNVCTVMVTTLVLEVIISYFFSQL 601
V + + T L +E + + L
Sbjct: 398 EVQPQLVLLQKTLLNIEGLGRQLYPDL 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,776,523
Number of Sequences: 539616
Number of extensions: 8384819
Number of successful extensions: 26481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 25708
Number of HSP's gapped (non-prelim): 215
length of query: 601
length of database: 191,569,459
effective HSP length: 123
effective length of query: 478
effective length of database: 125,196,691
effective search space: 59844018298
effective search space used: 59844018298
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)