BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007499
(601 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/541 (37%), Positives = 296/541 (54%), Gaps = 24/541 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
+RG + +P NKD F L E S E Q R +++F L + +
Sbjct: 24 QRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFD-- 81
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
++ +L L DRNE L+YRVL +I+ F PI+YTPTVGL CQ YS +FR+PRG
Sbjct: 82 --------RYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRG 133
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + S++ WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A G
Sbjct: 134 LFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGG 193
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-- 267
+NPQ LPV+LDVGT N++LL+D LY+GLRQ R+ G EY +DEFMEAV +++
Sbjct: 194 MNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLI 253
Query: 268 -FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXX 326
FEDF AF L +YR ++C FNDDIQ R ++ +DQ I
Sbjct: 254 QFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTILF 310
Query: 327 XXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 386
+ V A + G A K +L+D GLI K R +L FA +
Sbjct: 311 QGAGEAALGIAHLIVMALEK-EGLPKEKAIKKIWLVDSKGLIVKGRASLTQEKEKFAHEH 369
Query: 387 GDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPTM 446
E +L +V+++KP F+E++LK M + +P IFA+SNPT
Sbjct: 370 ------EEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNE-RPIIFALSNPTS 422
Query: 447 NAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 506
AEC+A +K +FASGSPF+ V L NG+ + Q NN Y+FPG+ LG + G R
Sbjct: 423 KAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLR 482
Query: 507 FITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHG 566
ITD + AE +A ++D+ + +G LYP +++IRD++ ++ +++ A +E A +
Sbjct: 483 QITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYP 542
Query: 567 E 567
E
Sbjct: 543 E 543
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/550 (37%), Positives = 305/550 (55%), Gaps = 29/550 (5%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
KR ++L +P NK GF L E ++ EQQ R + R Q
Sbjct: 37 KRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE-------Q 89
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
PN LA++ L+ L DRNE L+YRV+ D++K+ PI+YTPTVGL CQN+ ++R+P+G
Sbjct: 90 PN---DLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKG 146
Query: 150 MYFSAKDKG--EMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+Y + D ++ ++ NW + V IV+TDG RILGLGDLG GIGIP+GKL +YVA
Sbjct: 147 LYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVAL 206
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI 267
G+ P+ LPV+LDVGTNN LL D Y+GLR R+ G++Y +++D FM+A ++ +
Sbjct: 207 GGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKT 266
Query: 268 ---FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 324
FEDF AF L++Y+ ++ MFNDDIQ R ++ + +K
Sbjct: 267 LIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTR---VTKKLVSQEKY 323
Query: 325 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 384
+M V + G + A N+ +L+D DGL+TK RK ++P FAK
Sbjct: 324 LFFGAGAASTGIAEMIVH-QMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK 382
Query: 385 DPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNP 444
D + E S+LEV+R +P FNEEV++AM E + +P IFA+SNP
Sbjct: 383 D------MPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINE-RPIIFALSNP 435
Query: 445 TMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 504
T AECTA +A+ ++ASGSPF N +L NG Q NN Y+FPG+ LGT+L
Sbjct: 436 TSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFPGVALGTILFQ 494
Query: 505 ARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEG 564
R + + + AA+ +AS +T++ + G +YP + IR+I+ ++ + + + A
Sbjct: 495 IRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANL 554
Query: 565 HGEVGPRDLK 574
+ + P DL+
Sbjct: 555 YPQ--PEDLE 562
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/555 (34%), Positives = 291/555 (52%), Gaps = 26/555 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
K+G ++L DP NK F L E + + Q +++F L +
Sbjct: 1 KKGYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSD---- 56
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L ++ +L L DRNE L+Y+VL +I+ F PI+YTPTVGL CQ+Y FRRPRG
Sbjct: 57 ------LDRYILLXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + + + +WP + IV+TDG RILGLGDLG G GIP+GKL +Y A G
Sbjct: 111 LFITIHDRGHIATXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-- 267
+ P + LPV LDVGT+N+ LL+D LY+GLR R+ G+ Y ++DEF EAV +R+
Sbjct: 171 VKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLI 230
Query: 268 -FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXX 326
FEDF AF L +YR ++C FNDDIQ R ++ +D +
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNRLSDHTVLF 287
Query: 327 XXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 386
+ V A + G + A + + +D GLI K R +L P FA +
Sbjct: 288 QGAGEAALGIANLIVXAXQK-EGVSKEEAIKRIWXVDSKGLIVKGRASLTPEKEHFAHEH 346
Query: 387 GDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPTM 446
E +L ++V+ +KP F +++L+ + +P IFA+SNPT
Sbjct: 347 C------EXKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNK-RPIIFALSNPTS 399
Query: 447 NAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 506
AECTA +K+ +FASGSPF+ V L +G+ + Q NN Y+FPG+ LG + G +
Sbjct: 400 KAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLK 459
Query: 507 FITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHG 566
I D + AE +A +++E + +G LYP + +I+ ++ ++ + + A + A +
Sbjct: 460 HIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYP 519
Query: 567 EVGPRDLKHMSKEET 581
+ P DL+ + +
Sbjct: 520 Q--PEDLEAFIRSQV 532
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 198/558 (35%), Positives = 298/558 (53%), Gaps = 25/558 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G ++ +P NK F L E + + + Q RF R+L+K T
Sbjct: 2 IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRF---HRNLKKMTS 58
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 59 -------PLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRP 111
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G+GIP+GKL +Y A
Sbjct: 112 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 171
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI 267
AGI P + LPV +DVGT+N LL+D Y+GL Q R ++Y ++DEFM+A+ R+ +
Sbjct: 172 AGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNT 231
Query: 268 ---FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 324
FEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 232 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQ---GTAAVALAGLLAAQKVISKPISEHKI 288
Query: 325 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 383
+ V + G ++ A+ K ++ DK GL+ K RK +D PF
Sbjct: 289 LFLGAGEAALGIANLIVMSMVE-NGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFT 347
Query: 384 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 443
+ + + + V +KP F +V++AM S + +P IFA+SN
Sbjct: 348 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAM-ASINERPVIFALSN 402
Query: 444 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 503
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 403 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 462
Query: 504 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V +A
Sbjct: 463 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAF 522
Query: 564 GHGEVGPRDLKHMSKEET 581
+ E P D KE+T
Sbjct: 523 VYPE--PEDKAKYVKEQT 538
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 198/575 (34%), Positives = 295/575 (51%), Gaps = 33/575 (5%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 21 IKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRF---HRNLKKXTS 77
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 78 -------PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 130
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A
Sbjct: 131 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 190
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI 267
AGI P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 191 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 250
Query: 268 ---FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 324
FEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 251 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKI 307
Query: 325 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 383
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 308 LFLGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFT 366
Query: 384 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 443
+ + + + V +KP F +V++A S + +P IFA+SN
Sbjct: 367 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSN 421
Query: 444 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 503
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 422 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 481
Query: 504 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 482 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA- 540
Query: 564 GHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 598
++ E+ +YV W Y L+
Sbjct: 541 ---------FRYPEPEDKAKYVKERTWRSEYDSLL 566
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 198/575 (34%), Positives = 295/575 (51%), Gaps = 33/575 (5%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 21 IKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRF---HRNLKKXTS 77
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 78 -------PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 130
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A
Sbjct: 131 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 190
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI 267
AGI P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 191 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 250
Query: 268 ---FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 324
FEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 251 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKI 307
Query: 325 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 383
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 308 LFLGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFT 366
Query: 384 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 443
+ + + + V +KP F +V++A S + +P IFA+SN
Sbjct: 367 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSN 421
Query: 444 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 503
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 422 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 481
Query: 504 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 482 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA- 540
Query: 564 GHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 598
++ E+ +YV W Y L+
Sbjct: 541 ---------FRYPEPEDKAKYVKERTWRSEYDSLL 566
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 198/575 (34%), Positives = 295/575 (51%), Gaps = 33/575 (5%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 1 IKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFH---RNLKKXTS 57
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 58 -------PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 110
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A
Sbjct: 111 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 170
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI 267
AGI P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 171 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 230
Query: 268 ---FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 324
FEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 231 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKI 287
Query: 325 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 383
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 288 LFLGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFT 346
Query: 384 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 443
+ + + + V +KP F +V++A S + +P IFA+SN
Sbjct: 347 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSN 401
Query: 444 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 503
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 402 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 461
Query: 504 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 462 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA- 520
Query: 564 GHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 598
++ E+ +YV W Y L+
Sbjct: 521 ---------FRYPEPEDKAKYVKERTWRSEYDSLL 546
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 198/573 (34%), Positives = 294/573 (51%), Gaps = 33/573 (5%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 1 EKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFH---RNLKKXTS-- 55
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP+G
Sbjct: 56 -----PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A AG
Sbjct: 111 LFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-- 267
I P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 171 IRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLI 230
Query: 268 -FEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXX 326
FEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 231 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKILF 287
Query: 327 XXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD 385
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 288 LGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHS 346
Query: 386 PGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPT 445
+ + + + V +KP F +V++A S + +P IFA+SNPT
Sbjct: 347 APESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSNPT 401
Query: 446 MNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 505
AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 402 AQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNT 461
Query: 506 RFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGH 565
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 462 RHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA--- 518
Query: 566 GEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 598
++ E+ +YV W Y L+
Sbjct: 519 -------FRYPEPEDKAKYVKERTWRSEYDSLL 544
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 433 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYL 492
+ +P IFAM+NP E +A + AG IV G G+ NQ NN+
Sbjct: 280 AARPVIFAMANPI--PEIYPDEALE-AGAYIV------------GTGRSDFPNQINNVLA 324
Query: 493 FPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAV 552
FPGI G L + A+ IT M AA+ +AS + D+ + + P D+ ++ AE+ A
Sbjct: 325 FPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNIIP--DAFKEGVAEIVAKS 382
Query: 553 LRAAV 557
+R+ V
Sbjct: 383 VRSVV 387
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 49/171 (28%)
Query: 127 IIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGL 186
I YTP V V AKDK ++ Y+ ++ + V++DG+ +LGL
Sbjct: 38 IAYTPGVASVSSAI-------------AKDK----TLAYDLTTKKNTVAVISDGTAVLGL 80
Query: 187 GDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLE 244
GD+G + +P+ GK ++ A AG++ +P++LD +
Sbjct: 81 GDIGPEA-AMPVMEGKAALFKAFAGVDA---IPIVLDTK--------------------D 116
Query: 245 GEEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRK--RFCMFNDD 293
EE +SIV +A+ + ED FE +R K +F+DD
Sbjct: 117 TEEIISIV----KALAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFHDD 163
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 433 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYL 492
S KP IFA++NP + A + AG IV G+ H NQ NN+
Sbjct: 275 SRKPVIFALANPVPEIDPELA---REAGAFIV------------ATGRSDHPNQVNNLLA 319
Query: 493 FPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSID 539
FPGI G + ++ IT ML A E +A E P+ I+ + D
Sbjct: 320 FPGIMKGAVEKRSK-ITKNMLLSAVEAIARSCEPE--PERIIPEAFD 363
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 97/432 (22%), Positives = 158/432 (36%), Gaps = 84/432 (19%)
Query: 110 ETLYYRVLIDNIKDF--APIIYTPTVGLVCQNYSGLFRRPRGMYFSA--KDKGEMMSMIY 165
+T +Y+ L + + F I P L N+ + P S +D + S+ Y
Sbjct: 28 KTQFYKELAEKVHKFYKGKIQIMPKCTLAGFNWFNAYYTPGVSRISTNIRDNNDS-SLFY 86
Query: 166 NWPAQQVDMIVLTDGSRILGLGDLGVQG-IGIPIGKLDVYVAAAGINPQRILPVMLDVGT 224
+ V V++D +R+LG GD+ G +G+ GK + GI+ +P+ +D +
Sbjct: 87 SLRGNFVG--VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDA---VPICID--S 139
Query: 225 NNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYR 284
N+ EG+ V EF++ + + ED ++ L+ R
Sbjct: 140 KNK----------------EGKNDPDAVIEFVQRIQHTFGAINLEDISQPNCYKILDVLR 183
Query: 285 KRFC---MFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXXXXXXXXXXXXXKMAV 341
+ C +++DD Q A L D + ++ ++ V
Sbjct: 184 ES-CDIPVWHDDQQGTASVTLAGLL---NALKLVKKDIHECRMVFIGAGSSNTTCLRLIV 239
Query: 342 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-------DPGDFMGLRE 394
A A K + D G + R+++ + K +P F + E
Sbjct: 240 TAGAD---------PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAE 290
Query: 395 ---GASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPTMNAECT 451
GA +L + P E +K+M E KP +F +NP E
Sbjct: 291 ACVGADVLISLSTPGP----------GVVKAEWIKSMGE----KPIVFCCANPV--PEIY 334
Query: 452 AADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDG 511
+A K AG IV G+ NQ NN FPGI G L+ AR ITD
Sbjct: 335 PYEA-KEAGAYIV------------ATGRGDFPNQVNNSVGFPGILKGALIVRARKITDN 381
Query: 512 MLQQAAECLASY 523
M A+ LA +
Sbjct: 382 MAIAASRALAEF 393
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 433 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYL 492
S KP IFA++NP + A + AG IV G+ H NQ NN+
Sbjct: 285 SRKPVIFALANPVPEIDPELA---REAGAFIV------------ATGRSDHPNQVNNLLA 329
Query: 493 FPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSID 539
FPGI G + ++ IT L A E +A E P+ I+ + D
Sbjct: 330 FPGIXKGAVEKRSK-ITKNXLLSAVEAIARSCEPE--PERIIPEAFD 373
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 47/170 (27%)
Query: 129 YTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188
YTP V C+ A+D G+ +Y + ++ + V++DGSRILGLG+
Sbjct: 38 YTPGVAEPCKEI-------------ARDPGK----VYEYTSKGNLVAVVSDGSRILGLGN 80
Query: 189 LG-VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEE 247
+G + G+ + GK ++ G++ P+M+ N+
Sbjct: 81 IGPLAGLPVMEGKALLFKRFGGVD---AFPIMIKEQEPNK-------------------- 117
Query: 248 YLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRKRF--CMFNDDIQ 295
++ IV +A+ + ED F LER R+ +F+DD Q
Sbjct: 118 FIDIV----KAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 438 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 497
+F ++NP E +A K AG IV G+ + NQ NN+ FPGI
Sbjct: 292 VFPLANPV--PEILPEEA-KKAGARIV------------ATGRSDYPNQINNLLGFPGIF 336
Query: 498 LGTLLSGARFITDGM 512
G L AR ITD M
Sbjct: 337 RGALDVRARTITDSM 351
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 18/84 (21%)
Query: 129 YTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188
YTP V C+ A+D G+ +Y + ++ + V++DGSRILGLG+
Sbjct: 38 YTPGVAEPCKEI-------------ARDPGK----VYEYTSKGNLVAVVSDGSRILGLGN 80
Query: 189 LG-VQGIGIPIGKLDVYVAAAGIN 211
+G + G+ + GK ++ G++
Sbjct: 81 IGPLAGLPVXEGKALLFKRFGGVD 104
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 438 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 497
+F ++NP E +A K AG IV G+ + NQ NN+ FPGI
Sbjct: 292 VFPLANPV--PEILPEEA-KKAGARIV------------ATGRSDYPNQINNLLGFPGIF 336
Query: 498 LGTLLSGARFITD 510
G L AR ITD
Sbjct: 337 RGALDVRARTITD 349
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 209 GINPQRILPVMLDVGTNNQKL---LEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHAR--- 262
G+NPQ+ L+ GT Q+L + LG + PR +S++ M VH R
Sbjct: 114 GVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPR-----KMSVIVPGMNMVHERVSI 168
Query: 263 WPKAIFEDFQMKWA---FETLERYRKRFCMFNDDIQ 295
P+ E +W E++ + + ++NDD Q
Sbjct: 169 RPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQ 204
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 209 GINPQRILPVMLDVGTNNQKL---LEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHAR--- 262
G+NPQ+ L+ GT Q+L + LG + PR +S++ M VH R
Sbjct: 106 GVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPR-----KMSVIVPGMNMVHERVCI 160
Query: 263 WPKAIFEDFQMKWA---FETLERYRKRFCMFNDDIQ 295
P+ E +W E++ + + ++NDD Q
Sbjct: 161 RPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQ 196
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 191 VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEG----- 245
+ G IP +++Y AA I+ GTNN ++ ++ + PR+
Sbjct: 291 IDGDFIPADPINLYANAADID--------YIAGTNN---MDGHIFASIDMPRINKGNKKV 339
Query: 246 --EEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRKRFCM-FNDDI 294
E++ +V EF R K F+ + WA + + +K+ + F D+
Sbjct: 340 TEEDFYKLVSEFTITKGLRGAKTTFDVYTESWAQDPSQENKKKTVVDFETDV 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,154,247
Number of Sequences: 62578
Number of extensions: 647584
Number of successful extensions: 1481
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 25
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)