Query 007499
Match_columns 601
No_of_seqs 190 out of 1348
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 11:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-211 8E-216 1669.3 42.6 542 25-598 24-569 (582)
2 PRK13529 malate dehydrogenase; 100.0 1E-208 2E-213 1685.4 50.6 552 21-599 6-562 (563)
3 PTZ00317 NADP-dependent malic 100.0 1E-205 3E-210 1660.3 49.3 549 21-593 8-559 (559)
4 PLN03129 NADP-dependent malic 100.0 1E-204 2E-209 1658.8 50.3 539 29-598 39-581 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 8E-117 2E-121 931.7 36.3 425 65-597 1-431 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 1E-107 2E-112 922.2 33.0 363 114-563 27-408 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 6E-107 1E-111 920.6 34.6 361 114-563 31-412 (763)
8 PRK07232 bifunctional malic en 100.0 3E-106 7E-111 910.7 33.4 361 114-563 23-404 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 2.7E-97 6E-102 757.0 29.4 279 294-592 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 6.8E-95 1.5E-99 731.4 19.8 255 294-557 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.7E-91 3.6E-96 706.0 25.5 251 294-556 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 2.1E-81 4.5E-86 604.5 4.7 179 106-284 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 3.1E-56 6.8E-61 443.7 21.8 225 294-556 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.7 1.1E-07 2.3E-12 81.5 10.4 86 296-442 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.3 0.0036 7.9E-08 69.1 14.7 151 254-445 133-302 (425)
16 cd00401 AdoHcyase S-adenosyl-L 97.0 0.0057 1.2E-07 67.3 12.2 161 254-457 123-302 (413)
17 TIGR00936 ahcY adenosylhomocys 96.9 0.013 2.7E-07 64.5 13.4 159 254-455 116-293 (406)
18 PLN02494 adenosylhomocysteinas 96.8 0.012 2.5E-07 65.9 12.6 131 286-458 215-355 (477)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.016 3.5E-07 58.4 11.5 135 297-457 2-140 (217)
20 TIGR01035 hemA glutamyl-tRNA r 96.4 0.014 3E-07 64.0 9.8 142 274-453 141-285 (417)
21 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.019 4.2E-07 60.4 10.2 138 274-446 139-277 (311)
22 cd01080 NAD_bind_m-THF_DH_Cycl 96.1 0.03 6.4E-07 54.5 9.2 89 305-446 31-120 (168)
23 PRK14192 bifunctional 5,10-met 96.1 0.018 3.8E-07 60.4 8.2 109 296-457 137-250 (283)
24 TIGR02853 spore_dpaA dipicolin 96.1 0.096 2.1E-06 54.9 13.3 174 253-470 84-265 (287)
25 PTZ00075 Adenosylhomocysteinas 95.9 0.11 2.4E-06 58.3 13.7 122 287-445 216-344 (476)
26 PRK00045 hemA glutamyl-tRNA re 95.9 0.03 6.5E-07 61.5 9.0 121 296-446 161-284 (423)
27 PLN02477 glutamate dehydrogena 95.9 0.24 5.3E-06 54.7 15.7 188 243-457 112-324 (410)
28 PF00670 AdoHcyase_NAD: S-aden 95.8 0.18 3.9E-06 49.2 12.9 121 295-457 3-123 (162)
29 PF01488 Shikimate_DH: Shikima 95.7 0.0097 2.1E-07 55.2 3.6 106 316-446 7-113 (135)
30 PRK08306 dipicolinate synthase 95.3 0.12 2.5E-06 54.4 10.3 106 303-443 137-242 (296)
31 PRK14175 bifunctional 5,10-met 95.3 0.049 1.1E-06 57.5 7.4 97 295-444 135-232 (286)
32 PRK14982 acyl-ACP reductase; P 95.0 0.098 2.1E-06 56.4 9.0 113 297-446 134-250 (340)
33 cd01076 NAD_bind_1_Glu_DH NAD( 94.9 0.21 4.5E-06 50.8 10.6 129 295-446 8-141 (227)
34 cd05313 NAD_bind_2_Glu_DH NAD( 94.8 0.24 5.1E-06 51.6 10.8 139 296-457 16-167 (254)
35 PLN00203 glutamyl-tRNA reducta 94.8 0.12 2.5E-06 58.8 9.1 144 274-446 225-373 (519)
36 PRK08293 3-hydroxybutyryl-CoA 94.4 0.54 1.2E-05 48.7 12.5 195 322-563 4-213 (287)
37 PRK00676 hemA glutamyl-tRNA re 94.4 0.1 2.2E-06 56.3 7.1 126 274-446 136-265 (338)
38 PTZ00079 NADP-specific glutama 94.3 0.45 9.7E-06 53.3 12.1 187 243-457 143-366 (454)
39 COG0373 HemA Glutamyl-tRNA red 94.2 0.12 2.7E-06 57.0 7.5 259 201-560 94-361 (414)
40 PRK14191 bifunctional 5,10-met 94.1 0.14 3.1E-06 54.0 7.4 83 298-426 137-220 (285)
41 PRK13940 glutamyl-tRNA reducta 94.0 0.056 1.2E-06 59.6 4.5 134 274-446 142-277 (414)
42 cd01075 NAD_bind_Leu_Phe_Val_D 94.0 0.26 5.6E-06 49.0 8.6 122 297-457 5-129 (200)
43 TIGR02354 thiF_fam2 thiamine b 93.9 0.075 1.6E-06 52.9 4.6 109 315-450 18-127 (200)
44 PRK09414 glutamate dehydrogena 93.7 2.3 5.1E-05 47.6 16.4 192 243-457 138-357 (445)
45 PLN00106 malate dehydrogenase 93.7 0.26 5.7E-06 52.7 8.6 120 303-446 4-139 (323)
46 cd05212 NAD_bind_m-THF_DH_Cycl 93.6 0.58 1.3E-05 44.4 9.9 83 299-427 9-92 (140)
47 TIGR00518 alaDH alanine dehydr 93.4 0.25 5.4E-06 53.6 8.0 229 157-443 20-268 (370)
48 PRK06129 3-hydroxyacyl-CoA deh 93.4 0.44 9.5E-06 49.9 9.6 38 482-519 184-221 (308)
49 cd05197 GH4_glycoside_hydrolas 93.3 0.12 2.7E-06 57.1 5.5 129 322-468 1-166 (425)
50 PRK14176 bifunctional 5,10-met 92.8 0.33 7.1E-06 51.4 7.5 85 296-426 142-227 (287)
51 PRK09260 3-hydroxybutyryl-CoA 92.8 1 2.2E-05 46.6 11.2 129 322-475 2-145 (288)
52 PRK12549 shikimate 5-dehydroge 92.6 0.18 4E-06 52.7 5.4 57 287-365 104-160 (284)
53 PRK10792 bifunctional 5,10-met 92.5 0.35 7.6E-06 51.1 7.3 84 297-426 138-222 (285)
54 PRK08328 hypothetical protein; 92.4 0.064 1.4E-06 54.3 1.7 125 279-447 6-132 (231)
55 PRK14194 bifunctional 5,10-met 92.4 0.37 8.1E-06 51.3 7.4 93 297-442 138-231 (301)
56 PRK14189 bifunctional 5,10-met 92.3 0.38 8.2E-06 50.9 7.2 84 297-426 137-221 (285)
57 cd01078 NAD_bind_H4MPT_DH NADP 92.2 0.35 7.6E-06 47.0 6.5 54 297-365 7-61 (194)
58 PRK14031 glutamate dehydrogena 92.2 4.6 0.0001 45.3 15.9 184 243-445 134-347 (444)
59 TIGR00561 pntA NAD(P) transhyd 91.9 1.4 3.1E-05 50.1 11.6 173 227-429 80-275 (511)
60 cd05296 GH4_P_beta_glucosidase 91.7 0.23 5E-06 54.9 5.1 129 322-468 1-166 (419)
61 PF00208 ELFV_dehydrog: Glutam 91.4 0.27 5.9E-06 50.6 4.9 136 293-446 6-152 (244)
62 PRK09424 pntA NAD(P) transhydr 91.4 1.2 2.7E-05 50.6 10.5 191 227-452 81-296 (509)
63 PRK14030 glutamate dehydrogena 91.3 1.8 3.9E-05 48.5 11.5 191 243-457 134-357 (445)
64 PRK06035 3-hydroxyacyl-CoA deh 91.2 5.8 0.00013 41.1 14.6 32 322-365 4-35 (291)
65 PRK12749 quinate/shikimate deh 91.2 0.35 7.5E-06 50.8 5.6 57 287-365 101-157 (288)
66 PRK14183 bifunctional 5,10-met 91.2 0.6 1.3E-05 49.3 7.3 86 296-427 135-221 (281)
67 PRK12548 shikimate 5-dehydroge 91.1 0.43 9.3E-06 49.9 6.1 58 286-365 102-159 (289)
68 PTZ00082 L-lactate dehydrogena 91.0 0.6 1.3E-05 49.8 7.2 129 321-471 6-156 (321)
69 PRK14178 bifunctional 5,10-met 91.0 0.51 1.1E-05 49.8 6.5 85 296-426 130-215 (279)
70 PF02882 THF_DHG_CYH_C: Tetrah 90.9 0.94 2E-05 44.0 7.8 86 296-427 14-100 (160)
71 PRK14190 bifunctional 5,10-met 90.9 0.67 1.5E-05 49.0 7.3 84 297-426 137-221 (284)
72 cd00650 LDH_MDH_like NAD-depen 90.8 0.35 7.6E-06 49.5 5.0 127 324-469 1-145 (263)
73 cd01079 NAD_bind_m-THF_DH NAD 90.7 0.95 2E-05 45.6 7.8 104 299-427 34-148 (197)
74 PRK00257 erythronate-4-phospha 90.7 1.7 3.6E-05 47.8 10.4 107 297-444 95-209 (381)
75 PRK14027 quinate/shikimate deh 90.7 0.38 8.3E-06 50.4 5.3 57 287-365 104-160 (283)
76 PRK06223 malate dehydrogenase; 90.5 0.46 9.9E-06 49.6 5.7 126 322-472 3-148 (307)
77 PTZ00117 malate dehydrogenase; 90.4 0.87 1.9E-05 48.4 7.8 130 321-472 5-151 (319)
78 cd01065 NAD_bind_Shikimate_DH 90.3 0.55 1.2E-05 43.3 5.5 87 303-415 4-90 (155)
79 PLN02928 oxidoreductase family 90.2 2.4 5.1E-05 45.8 10.9 147 295-466 120-284 (347)
80 PRK14179 bifunctional 5,10-met 90.2 0.82 1.8E-05 48.4 7.2 93 297-442 137-230 (284)
81 PRK14174 bifunctional 5,10-met 90.1 1.1 2.4E-05 47.7 8.1 87 298-426 139-226 (295)
82 PTZ00325 malate dehydrogenase; 90.0 1.6 3.4E-05 46.8 9.3 108 320-446 7-129 (321)
83 PRK07531 bifunctional 3-hydrox 89.9 2.1 4.6E-05 48.1 10.7 130 322-476 5-145 (495)
84 TIGR01809 Shik-DH-AROM shikima 89.9 0.51 1.1E-05 49.2 5.5 57 287-365 100-158 (282)
85 PF01262 AlaDh_PNT_C: Alanine 89.6 0.28 6.1E-06 47.0 3.0 95 319-429 18-130 (168)
86 TIGR01763 MalateDH_bact malate 89.5 0.49 1.1E-05 50.0 5.0 126 322-472 2-147 (305)
87 PRK14619 NAD(P)H-dependent gly 89.5 2 4.4E-05 45.0 9.6 32 322-365 5-36 (308)
88 PF00899 ThiF: ThiF family; I 89.1 0.48 1E-05 43.5 4.0 36 321-367 2-37 (135)
89 PRK14172 bifunctional 5,10-met 89.1 1.2 2.7E-05 46.9 7.5 84 297-426 137-221 (278)
90 PRK08605 D-lactate dehydrogena 89.1 8.7 0.00019 41.1 14.1 158 253-445 59-239 (332)
91 PRK14177 bifunctional 5,10-met 89.0 1.3 2.8E-05 47.0 7.6 84 298-427 139-223 (284)
92 PRK14184 bifunctional 5,10-met 89.0 1 2.2E-05 47.8 6.8 88 297-426 136-224 (286)
93 PRK14170 bifunctional 5,10-met 88.6 1.3 2.9E-05 46.8 7.4 86 296-427 135-221 (284)
94 PRK15438 erythronate-4-phospha 88.4 3.3 7.2E-05 45.5 10.5 107 296-443 94-208 (378)
95 PRK07679 pyrroline-5-carboxyla 88.4 11 0.00023 39.0 13.8 100 321-446 3-103 (279)
96 COG0169 AroE Shikimate 5-dehyd 88.4 0.78 1.7E-05 48.4 5.5 49 304-364 110-158 (283)
97 PRK06130 3-hydroxybutyryl-CoA 88.3 15 0.00032 38.3 14.9 129 322-476 5-144 (311)
98 PRK00258 aroE shikimate 5-dehy 88.2 0.87 1.9E-05 47.2 5.7 49 303-365 107-156 (278)
99 PRK05086 malate dehydrogenase; 88.1 2.3 4.9E-05 45.2 8.8 106 322-446 1-122 (312)
100 PRK14166 bifunctional 5,10-met 88.0 1.6 3.4E-05 46.2 7.5 86 295-426 134-220 (282)
101 PRK07066 3-hydroxybutyryl-CoA 87.8 0.57 1.2E-05 50.2 4.1 110 399-517 103-220 (321)
102 PRK14187 bifunctional 5,10-met 87.6 1.8 3.8E-05 46.2 7.6 85 296-426 138-223 (294)
103 PRK15076 alpha-galactosidase; 87.6 0.86 1.9E-05 50.6 5.5 134 322-472 2-174 (431)
104 PRK14188 bifunctional 5,10-met 87.5 1.3 2.9E-05 47.0 6.7 84 297-426 137-221 (296)
105 COG0578 GlpA Glycerol-3-phosph 87.5 3.1 6.7E-05 47.7 9.9 157 322-560 13-178 (532)
106 PRK00066 ldh L-lactate dehydro 87.5 1.1 2.4E-05 47.6 6.1 127 322-471 7-150 (315)
107 PF03807 F420_oxidored: NADP o 87.3 0.98 2.1E-05 38.5 4.6 95 323-444 1-96 (96)
108 TIGR00872 gnd_rel 6-phosphoglu 87.0 3.6 7.9E-05 43.0 9.5 95 323-446 2-97 (298)
109 PF00056 Ldh_1_N: lactate/mala 87.0 0.23 5.1E-06 46.6 0.6 113 323-457 2-130 (141)
110 PRK12921 2-dehydropantoate 2-r 86.9 1.8 3.9E-05 44.5 7.1 103 323-446 2-106 (305)
111 PF01210 NAD_Gly3P_dh_N: NAD-d 86.8 1.7 3.7E-05 41.2 6.3 88 323-430 1-91 (157)
112 PRK08374 homoserine dehydrogen 86.8 4.1 8.9E-05 43.8 9.9 109 322-439 3-120 (336)
113 PRK14171 bifunctional 5,10-met 86.7 2 4.4E-05 45.6 7.4 87 295-427 136-223 (288)
114 PLN02516 methylenetetrahydrofo 86.6 2 4.4E-05 45.8 7.4 86 296-427 145-231 (299)
115 PRK14193 bifunctional 5,10-met 86.6 2.1 4.5E-05 45.4 7.4 87 297-427 137-224 (284)
116 PRK14169 bifunctional 5,10-met 86.5 2.1 4.6E-05 45.3 7.4 86 296-427 134-220 (282)
117 PF02826 2-Hacid_dh_C: D-isome 86.5 2.2 4.7E-05 41.3 7.0 116 312-466 30-149 (178)
118 PRK14168 bifunctional 5,10-met 86.2 2.2 4.8E-05 45.5 7.4 90 296-427 139-229 (297)
119 COG1486 CelF Alpha-galactosida 86.2 0.75 1.6E-05 51.4 4.0 128 320-464 2-166 (442)
120 PRK11880 pyrroline-5-carboxyla 86.2 13 0.00029 37.7 12.8 121 322-476 3-123 (267)
121 cd05291 HicDH_like L-2-hydroxy 86.1 2.1 4.6E-05 44.9 7.2 127 323-471 2-145 (306)
122 PRK09599 6-phosphogluconate de 86.0 2.7 5.9E-05 43.9 7.9 96 323-446 2-98 (301)
123 PRK12550 shikimate 5-dehydroge 85.6 1.3 2.9E-05 46.2 5.4 56 287-365 100-155 (272)
124 PRK02842 light-independent pro 85.6 4.4 9.6E-05 44.7 9.7 186 153-414 176-368 (427)
125 PRK14180 bifunctional 5,10-met 85.6 2.6 5.6E-05 44.7 7.5 86 295-426 135-221 (282)
126 PRK14182 bifunctional 5,10-met 85.5 2.6 5.7E-05 44.6 7.5 84 298-427 137-221 (282)
127 PRK12490 6-phosphogluconate de 85.4 2.9 6.2E-05 43.7 7.8 96 323-446 2-98 (299)
128 PRK14173 bifunctional 5,10-met 85.3 2.6 5.6E-05 44.7 7.4 84 297-426 134-218 (287)
129 PRK14181 bifunctional 5,10-met 85.0 2.4 5.2E-05 45.0 6.9 90 296-427 131-221 (287)
130 KOG0685 Flavin-containing amin 84.9 0.38 8.2E-06 54.0 1.0 22 321-342 21-42 (498)
131 cd05297 GH4_alpha_glucosidase_ 84.8 1.5 3.3E-05 48.4 5.7 132 323-471 2-171 (423)
132 PRK08644 thiamine biosynthesis 84.5 0.85 1.8E-05 45.8 3.2 38 314-365 24-61 (212)
133 PRK14167 bifunctional 5,10-met 84.1 2.9 6.4E-05 44.6 7.2 88 298-427 137-225 (297)
134 PRK08223 hypothetical protein; 84.0 0.55 1.2E-05 49.7 1.7 58 277-366 4-61 (287)
135 TIGR02356 adenyl_thiF thiazole 83.8 0.98 2.1E-05 44.8 3.3 38 314-365 17-54 (202)
136 PRK06436 glycerate dehydrogena 83.7 8 0.00017 41.1 10.2 109 318-466 119-231 (303)
137 PLN02616 tetrahydrofolate dehy 83.7 3.1 6.7E-05 45.6 7.3 85 297-427 210-295 (364)
138 cd00757 ThiF_MoeB_HesA_family 83.6 0.99 2.1E-05 45.4 3.3 107 315-446 18-124 (228)
139 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.6 4 8.6E-05 46.3 8.4 36 483-518 186-221 (503)
140 COG0111 SerA Phosphoglycerate 83.4 8.2 0.00018 41.5 10.3 98 298-428 104-223 (324)
141 cd00704 MDH Malate dehydrogena 83.4 6.4 0.00014 42.2 9.4 120 323-459 2-140 (323)
142 PRK12475 thiamine/molybdopteri 83.3 1 2.2E-05 48.4 3.5 39 314-366 20-58 (338)
143 TIGR02355 moeB molybdopterin s 83.3 1 2.2E-05 46.1 3.3 107 314-446 20-127 (240)
144 cd05298 GH4_GlvA_pagL_like Gly 83.2 1.9 4.2E-05 48.1 5.6 133 322-472 1-171 (437)
145 PF01113 DapB_N: Dihydrodipico 83.1 7.5 0.00016 35.6 8.6 98 322-442 1-99 (124)
146 PRK14186 bifunctional 5,10-met 83.1 3.7 8E-05 43.8 7.4 85 297-427 137-222 (297)
147 KOG0029 Amine oxidase [Seconda 83.1 0.56 1.2E-05 53.1 1.4 34 322-358 16-49 (501)
148 PRK05808 3-hydroxybutyryl-CoA 82.9 19 0.0004 37.2 12.3 32 322-365 4-35 (282)
149 PRK12480 D-lactate dehydrogena 82.9 11 0.00023 40.6 10.8 112 296-444 105-236 (330)
150 PRK14185 bifunctional 5,10-met 82.7 3.8 8.3E-05 43.6 7.3 89 297-427 136-225 (293)
151 PRK08410 2-hydroxyacid dehydro 82.6 9.7 0.00021 40.4 10.3 138 285-464 85-252 (311)
152 cd01337 MDH_glyoxysomal_mitoch 82.5 7.8 0.00017 41.4 9.6 105 323-446 2-121 (310)
153 PRK00094 gpsA NAD(P)H-dependen 82.4 2.9 6.3E-05 43.3 6.3 104 323-446 3-109 (325)
154 TIGR02992 ectoine_eutC ectoine 82.4 7.1 0.00015 41.6 9.3 106 322-455 130-238 (326)
155 PLN02897 tetrahydrofolate dehy 81.8 4.1 9E-05 44.3 7.3 85 297-427 193-278 (345)
156 PRK13243 glyoxylate reductase; 81.7 15 0.00032 39.5 11.4 145 285-466 89-262 (333)
157 PRK05600 thiamine biosynthesis 81.7 1.1 2.5E-05 48.7 3.1 108 314-440 37-162 (370)
158 cd01336 MDH_cytoplasmic_cytoso 81.5 10 0.00022 40.6 10.1 134 322-473 3-158 (325)
159 cd01485 E1-1_like Ubiquitin ac 81.4 1.3 2.9E-05 43.9 3.2 79 314-412 15-94 (198)
160 PF07992 Pyr_redox_2: Pyridine 81.3 1.5 3.3E-05 41.4 3.5 31 323-365 1-31 (201)
161 cd01487 E1_ThiF_like E1_ThiF_l 81.3 1.4 3.1E-05 42.8 3.3 32 323-365 1-32 (174)
162 cd01483 E1_enzyme_family Super 81.0 1.5 3.2E-05 40.6 3.1 99 323-444 1-99 (143)
163 TIGR01381 E1_like_apg7 E1-like 80.6 1.3 2.9E-05 51.7 3.2 38 319-367 336-373 (664)
164 PRK05442 malate dehydrogenase; 80.6 6.2 0.00013 42.4 8.1 121 322-459 5-144 (326)
165 PRK05690 molybdopterin biosynt 80.6 1.6 3.5E-05 44.7 3.6 38 314-365 28-65 (245)
166 PRK07530 3-hydroxybutyryl-CoA 80.5 6.9 0.00015 40.5 8.2 32 322-365 5-36 (292)
167 PLN02602 lactate dehydrogenase 80.2 5.5 0.00012 43.2 7.7 128 322-472 38-183 (350)
168 PRK07634 pyrroline-5-carboxyla 79.9 3.2 7E-05 41.4 5.4 117 321-468 4-121 (245)
169 KOG2337 Ubiquitin activating E 79.8 1.4 3.1E-05 50.0 3.1 38 319-367 338-375 (669)
170 COG0190 FolD 5,10-methylene-te 79.5 4.3 9.3E-05 43.1 6.3 86 296-427 134-220 (283)
171 cd00755 YgdL_like Family of ac 79.3 1.7 3.7E-05 44.5 3.2 35 320-365 10-44 (231)
172 TIGR01758 MDH_euk_cyt malate d 79.3 9.3 0.0002 41.0 8.9 135 323-475 1-157 (324)
173 PRK06522 2-dehydropantoate 2-r 79.2 3.9 8.5E-05 41.8 5.9 102 323-446 2-104 (304)
174 PLN03139 formate dehydrogenase 79.1 19 0.00042 39.7 11.4 143 318-497 196-342 (386)
175 TIGR00507 aroE shikimate 5-deh 78.8 3.5 7.7E-05 42.4 5.4 56 287-365 94-149 (270)
176 TIGR01772 MDH_euk_gproteo mala 78.5 7.2 0.00016 41.7 7.8 128 323-472 1-148 (312)
177 PRK08762 molybdopterin biosynt 78.4 1.7 3.8E-05 47.0 3.2 37 315-365 132-168 (376)
178 PRK09310 aroDE bifunctional 3- 78.2 3.3 7.1E-05 46.6 5.4 56 287-365 309-364 (477)
179 TIGR03140 AhpF alkyl hydropero 78.1 3.4 7.5E-05 46.4 5.5 83 257-342 140-233 (515)
180 PRK07878 molybdopterin biosynt 78.1 1.3 2.8E-05 48.5 2.1 38 314-365 38-75 (392)
181 cd01979 Pchlide_reductase_N Pc 78.0 14 0.00031 40.3 10.0 129 149-342 162-297 (396)
182 PRK08229 2-dehydropantoate 2-r 77.7 8.6 0.00019 40.4 8.0 105 322-447 3-112 (341)
183 PRK15469 ghrA bifunctional gly 77.7 16 0.00035 38.9 10.1 139 318-497 133-277 (312)
184 cd01492 Aos1_SUMO Ubiquitin ac 77.7 1.8 3.9E-05 42.9 2.8 80 314-414 17-96 (197)
185 PRK06487 glycerate dehydrogena 77.7 34 0.00074 36.5 12.5 191 286-525 89-309 (317)
186 PRK14851 hypothetical protein; 77.4 6.4 0.00014 46.4 7.6 128 314-461 39-194 (679)
187 PTZ00345 glycerol-3-phosphate 77.3 11 0.00024 41.3 8.9 22 322-343 12-33 (365)
188 PRK13581 D-3-phosphoglycerate 77.3 14 0.00029 42.2 10.0 198 285-527 86-305 (526)
189 PRK07688 thiamine/molybdopteri 77.1 2.2 4.8E-05 45.9 3.5 39 314-366 20-58 (339)
190 PRK07680 late competence prote 76.9 7.2 0.00016 40.1 7.0 98 323-446 2-100 (273)
191 PRK15317 alkyl hydroperoxide r 76.7 3.9 8.5E-05 46.0 5.4 92 259-365 141-243 (517)
192 COG0240 GpsA Glycerol-3-phosph 76.5 4.8 0.0001 43.6 5.7 100 322-442 2-105 (329)
193 PLN02306 hydroxypyruvate reduc 76.1 17 0.00036 40.1 9.9 135 286-443 109-273 (386)
194 PRK05597 molybdopterin biosynt 76.1 2.5 5.4E-05 45.7 3.6 38 314-365 24-61 (355)
195 TIGR02622 CDP_4_6_dhtase CDP-g 75.2 3 6.6E-05 43.8 3.8 102 320-442 3-127 (349)
196 cd00300 LDH_like L-lactate deh 74.9 7.7 0.00017 40.9 6.7 124 324-469 1-141 (300)
197 PRK15116 sulfur acceptor prote 74.8 2.9 6.2E-05 43.9 3.5 41 315-369 27-67 (268)
198 PRK07574 formate dehydrogenase 74.8 22 0.00048 39.2 10.4 175 286-497 137-335 (385)
199 PF02737 3HCDH_N: 3-hydroxyacy 74.7 3 6.4E-05 40.8 3.4 31 323-365 1-31 (180)
200 PF00070 Pyr_redox: Pyridine n 73.9 4.5 9.7E-05 33.7 3.8 35 323-369 1-35 (80)
201 PRK06932 glycerate dehydrogena 73.5 21 0.00045 38.1 9.6 110 317-467 143-256 (314)
202 PRK12439 NAD(P)H-dependent gly 73.4 4.9 0.00011 43.0 4.9 21 322-342 8-28 (341)
203 cd05290 LDH_3 A subgroup of L- 73.2 7.2 0.00016 41.5 6.1 114 323-459 1-133 (307)
204 PRK09754 phenylpropionate diox 73.2 5 0.00011 43.3 5.0 36 320-365 2-37 (396)
205 cd05294 LDH-like_MDH_nadp A la 73.2 20 0.00044 38.0 9.4 126 323-469 2-147 (309)
206 COG0039 Mdh Malate/lactate deh 73.1 9.9 0.00022 40.9 7.1 115 322-457 1-130 (313)
207 cd01339 LDH-like_MDH L-lactate 73.1 5.4 0.00012 41.7 5.0 125 324-471 1-143 (300)
208 PF13738 Pyr_redox_3: Pyridine 73.0 3.5 7.5E-05 39.3 3.3 30 325-365 1-30 (203)
209 PRK07411 hypothetical protein; 72.8 3 6.4E-05 45.7 3.2 38 314-365 34-71 (390)
210 PRK06270 homoserine dehydrogen 72.7 32 0.00069 37.0 10.9 110 322-439 3-123 (341)
211 TIGR01915 npdG NADPH-dependent 72.6 6.5 0.00014 39.2 5.3 100 323-446 2-105 (219)
212 PRK06476 pyrroline-5-carboxyla 72.4 80 0.0017 32.1 13.2 97 323-447 2-98 (258)
213 cd01338 MDH_choloroplast_like 72.3 20 0.00044 38.4 9.2 120 322-459 3-142 (322)
214 TIGR01327 PGDH D-3-phosphoglyc 72.2 18 0.00039 41.2 9.3 198 285-526 84-303 (525)
215 PRK14618 NAD(P)H-dependent gly 71.6 10 0.00022 40.0 6.7 32 322-365 5-36 (328)
216 PRK07502 cyclohexadienyl dehyd 71.5 16 0.00036 38.1 8.2 34 322-365 7-40 (307)
217 cd01486 Apg7 Apg7 is an E1-lik 71.5 3.6 7.9E-05 44.1 3.4 32 323-365 1-32 (307)
218 cd05293 LDH_1 A subgroup of L- 71.0 18 0.0004 38.5 8.5 127 322-471 4-148 (312)
219 PRK10886 DnaA initiator-associ 70.7 13 0.00029 37.2 6.9 87 322-428 42-129 (196)
220 PF01494 FAD_binding_3: FAD bi 70.0 3.8 8.2E-05 41.7 3.0 35 322-368 2-36 (356)
221 COG5322 Predicted dehydrogenas 70.0 6.6 0.00014 41.9 4.8 46 294-342 143-189 (351)
222 PRK14620 NAD(P)H-dependent gly 69.5 14 0.00031 38.8 7.2 32 323-366 2-33 (326)
223 PTZ00142 6-phosphogluconate de 69.2 11 0.00025 42.4 6.8 102 322-445 2-104 (470)
224 PF03446 NAD_binding_2: NAD bi 68.7 5.4 0.00012 37.9 3.6 95 322-446 2-98 (163)
225 PRK06153 hypothetical protein; 68.5 3.5 7.6E-05 45.6 2.5 100 314-439 172-271 (393)
226 cd01484 E1-2_like Ubiquitin ac 68.4 4.8 0.0001 41.4 3.4 32 323-365 1-32 (234)
227 PRK11790 D-3-phosphoglycerate 68.2 50 0.0011 36.6 11.4 197 285-526 97-318 (409)
228 TIGR03376 glycerol3P_DH glycer 68.1 10 0.00022 41.1 5.9 20 323-342 1-20 (342)
229 PRK00536 speE spermidine synth 68.0 7.8 0.00017 40.6 4.8 84 322-429 74-158 (262)
230 TIGR01759 MalateDH-SF1 malate 67.9 23 0.0005 38.0 8.5 120 322-459 4-143 (323)
231 TIGR01292 TRX_reduct thioredox 67.9 4.5 9.8E-05 40.6 3.0 31 323-365 2-32 (300)
232 PRK15409 bifunctional glyoxyla 67.7 22 0.00048 38.1 8.3 144 285-466 88-258 (323)
233 PLN02819 lysine-ketoglutarate 67.7 17 0.00037 45.0 8.3 98 321-429 203-325 (1042)
234 PF05834 Lycopene_cycl: Lycope 67.3 6.4 0.00014 42.3 4.2 35 324-368 2-36 (374)
235 PRK07340 ornithine cyclodeamin 67.2 32 0.00069 36.4 9.3 104 322-455 126-231 (304)
236 cd01491 Ube1_repeat1 Ubiquitin 66.7 5 0.00011 42.5 3.2 33 322-365 20-52 (286)
237 PLN02520 bifunctional 3-dehydr 66.2 9.4 0.0002 43.6 5.4 36 315-365 376-411 (529)
238 KOG0069 Glyoxylate/hydroxypyru 66.2 31 0.00067 37.6 9.0 116 296-445 120-256 (336)
239 PLN02688 pyrroline-5-carboxyla 65.8 24 0.00051 35.8 7.8 96 323-446 2-99 (266)
240 cd01488 Uba3_RUB Ubiquitin act 65.4 5.4 0.00012 42.4 3.1 32 323-365 1-32 (291)
241 TIGR00873 gnd 6-phosphoglucona 65.0 18 0.0004 40.8 7.3 97 324-443 2-99 (467)
242 PRK06141 ornithine cyclodeamin 64.4 38 0.00082 36.0 9.2 105 322-454 126-232 (314)
243 PRK08291 ectoine utilization p 64.2 31 0.00067 36.8 8.6 106 322-454 133-240 (330)
244 TIGR01285 nifN nitrogenase mol 63.5 24 0.00052 39.3 7.9 81 307-414 300-381 (432)
245 PRK12409 D-amino acid dehydrog 62.9 6.8 0.00015 42.0 3.4 33 322-366 2-34 (410)
246 TIGR01408 Ube1 ubiquitin-activ 62.8 4.3 9.4E-05 49.8 2.1 43 314-365 415-457 (1008)
247 COG0334 GdhA Glutamate dehydro 62.8 2.3E+02 0.0051 31.9 15.1 191 241-457 110-325 (411)
248 PRK06249 2-dehydropantoate 2-r 62.3 18 0.0004 37.9 6.4 104 322-446 6-110 (313)
249 TIGR02371 ala_DH_arch alanine 62.0 47 0.001 35.5 9.5 106 322-455 129-236 (325)
250 PRK04965 NADH:flavorubredoxin 61.9 12 0.00026 40.0 5.0 36 322-367 3-38 (377)
251 cd01489 Uba2_SUMO Ubiquitin ac 61.9 8.2 0.00018 41.4 3.7 32 323-365 1-32 (312)
252 PRK06475 salicylate hydroxylas 61.4 7 0.00015 42.0 3.2 22 321-342 2-23 (400)
253 COG0686 Ald Alanine dehydrogen 61.4 5.5 0.00012 43.2 2.3 106 322-453 169-289 (371)
254 TIGR02028 ChlP geranylgeranyl 60.6 7.2 0.00016 42.3 3.1 20 323-342 2-21 (398)
255 TIGR01470 cysG_Nterm siroheme 60.0 9.3 0.0002 38.3 3.6 35 319-365 7-41 (205)
256 KOG2304 3-hydroxyacyl-CoA dehy 59.7 5.9 0.00013 41.4 2.1 32 322-365 12-43 (298)
257 PRK06184 hypothetical protein; 59.6 8.4 0.00018 42.9 3.5 33 321-365 3-35 (502)
258 PRK07819 3-hydroxybutyryl-CoA 59.2 8.8 0.00019 40.1 3.4 32 322-365 6-37 (286)
259 TIGR02023 BchP-ChlP geranylger 59.1 8.1 0.00018 41.4 3.2 31 323-365 2-32 (388)
260 PRK04176 ribulose-1,5-biphosph 58.9 5.5 0.00012 41.0 1.8 36 320-367 24-59 (257)
261 COG0499 SAM1 S-adenosylhomocys 58.8 58 0.0013 36.2 9.4 128 291-460 185-316 (420)
262 PLN02527 aspartate carbamoyltr 58.5 2.6E+02 0.0056 30.0 15.5 133 259-416 92-228 (306)
263 PRK06719 precorrin-2 dehydroge 58.5 11 0.00023 36.3 3.5 35 319-365 11-45 (157)
264 PRK07236 hypothetical protein; 58.4 9.5 0.00021 40.7 3.5 23 321-343 6-28 (386)
265 COG2072 TrkA Predicted flavopr 58.4 9.6 0.00021 42.4 3.7 34 322-366 9-42 (443)
266 COG0565 LasT rRNA methylase [T 58.4 36 0.00079 35.5 7.5 78 321-417 4-83 (242)
267 PRK11883 protoporphyrinogen ox 58.3 5 0.00011 43.2 1.4 22 322-343 1-22 (451)
268 PLN02172 flavin-containing mon 58.3 9.5 0.00021 42.7 3.6 22 321-342 10-31 (461)
269 PF01266 DAO: FAD dependent ox 58.2 10 0.00022 38.6 3.5 33 323-367 1-33 (358)
270 PF13454 NAD_binding_9: FAD-NA 57.2 11 0.00024 35.6 3.3 36 325-367 1-36 (156)
271 PRK05732 2-octaprenyl-6-methox 56.9 10 0.00022 40.2 3.4 35 322-365 4-38 (395)
272 PRK13512 coenzyme A disulfide 56.3 12 0.00026 41.1 3.9 34 322-365 2-35 (438)
273 PRK12769 putative oxidoreducta 56.2 10 0.00023 44.0 3.6 33 321-365 327-359 (654)
274 PRK06718 precorrin-2 dehydroge 56.0 12 0.00026 37.3 3.6 34 319-364 8-41 (202)
275 PRK07233 hypothetical protein; 56.0 9 0.0002 40.8 2.9 31 323-365 1-31 (434)
276 TIGR03366 HpnZ_proposed putati 55.8 25 0.00054 35.8 5.9 47 303-364 107-153 (280)
277 PRK12810 gltD glutamate syntha 55.6 11 0.00024 41.9 3.5 33 321-365 143-175 (471)
278 PRK09880 L-idonate 5-dehydroge 55.5 22 0.00047 37.3 5.5 45 305-364 158-202 (343)
279 PTZ00318 NADH dehydrogenase-li 55.5 9.1 0.0002 41.9 2.8 33 321-365 10-42 (424)
280 PRK06823 ornithine cyclodeamin 55.4 97 0.0021 33.2 10.4 107 322-456 129-237 (315)
281 PRK06847 hypothetical protein; 55.3 11 0.00024 39.6 3.4 21 322-342 5-25 (375)
282 PRK14106 murD UDP-N-acetylmura 55.3 12 0.00026 40.9 3.7 35 319-365 3-37 (450)
283 PF13450 NAD_binding_8: NAD(P) 55.2 12 0.00026 30.9 2.8 31 326-368 1-31 (68)
284 PRK08163 salicylate hydroxylas 55.1 11 0.00023 40.1 3.2 21 322-342 5-25 (396)
285 PLN02268 probable polyamine ox 54.8 4.9 0.00011 43.6 0.6 21 323-343 2-22 (435)
286 PRK01713 ornithine carbamoyltr 54.5 96 0.0021 33.6 10.3 132 260-413 98-232 (334)
287 TIGR01505 tartro_sem_red 2-hyd 54.4 31 0.00068 35.6 6.5 31 323-365 1-31 (291)
288 KOG2250 Glutamate/leucine/phen 54.4 1.1E+02 0.0024 35.1 11.0 189 246-457 158-379 (514)
289 COG0644 FixC Dehydrogenases (f 54.4 12 0.00026 40.5 3.5 36 322-369 4-39 (396)
290 TIGR01316 gltA glutamate synth 54.3 12 0.00026 41.4 3.5 32 322-365 134-165 (449)
291 PRK07364 2-octaprenyl-6-methox 54.2 9.7 0.00021 40.7 2.8 21 322-342 19-39 (415)
292 TIGR01790 carotene-cycl lycope 54.2 10 0.00023 40.1 3.0 31 324-366 2-32 (388)
293 cd00529 RuvC_resolvase Hollida 54.1 37 0.00081 32.4 6.4 114 182-334 1-118 (154)
294 COG1052 LdhA Lactate dehydroge 54.0 72 0.0016 34.4 9.3 91 318-443 143-237 (324)
295 PRK09564 coenzyme A disulfide 54.0 14 0.0003 40.2 3.9 36 322-367 1-36 (444)
296 PRK09126 hypothetical protein; 53.7 11 0.00025 39.8 3.2 21 322-342 4-24 (392)
297 cd01974 Nitrogenase_MoFe_beta 53.6 41 0.00089 37.3 7.6 32 308-342 293-324 (435)
298 COG1252 Ndh NADH dehydrogenase 53.3 13 0.00028 41.4 3.6 35 321-365 3-37 (405)
299 TIGR02032 GG-red-SF geranylger 53.2 12 0.00026 37.3 3.1 33 323-367 2-34 (295)
300 PRK12771 putative glutamate sy 53.0 13 0.00028 42.4 3.6 33 321-365 137-169 (564)
301 PF03702 UPF0075: Uncharacteri 53.0 14 0.0003 40.6 3.7 105 244-367 213-321 (364)
302 COG0345 ProC Pyrroline-5-carbo 53.0 68 0.0015 33.9 8.6 35 322-365 2-37 (266)
303 cd05292 LDH_2 A subgroup of L- 52.9 53 0.0011 34.8 7.9 127 323-472 2-145 (308)
304 PLN02852 ferredoxin-NADP+ redu 52.4 15 0.00032 41.8 3.9 34 322-365 27-60 (491)
305 PRK11445 putative oxidoreducta 52.3 13 0.00029 39.4 3.4 30 323-365 3-32 (351)
306 TIGR00762 DegV EDD domain prot 52.3 31 0.00066 35.8 6.0 114 208-356 19-142 (275)
307 PRK11559 garR tartronate semia 52.1 41 0.00088 34.8 6.8 32 322-365 3-34 (296)
308 PRK11728 hydroxyglutarate oxid 52.1 14 0.00031 39.6 3.6 34 322-365 3-36 (393)
309 PRK11259 solA N-methyltryptoph 52.0 14 0.00029 38.9 3.4 33 322-366 4-36 (376)
310 PRK06928 pyrroline-5-carboxyla 51.6 35 0.00076 35.4 6.3 35 322-365 2-37 (277)
311 PRK07045 putative monooxygenas 51.4 14 0.00029 39.5 3.3 21 322-342 6-26 (388)
312 PRK06753 hypothetical protein; 51.4 13 0.00029 39.1 3.2 20 323-342 2-21 (373)
313 PRK00141 murD UDP-N-acetylmura 50.9 15 0.00033 41.0 3.7 25 319-343 13-37 (473)
314 TIGR03169 Nterm_to_SelD pyridi 50.9 11 0.00023 39.8 2.4 36 323-367 1-36 (364)
315 PRK12831 putative oxidoreducta 50.8 15 0.00032 41.1 3.6 33 321-365 140-172 (464)
316 PRK11749 dihydropyrimidine deh 50.7 14 0.0003 40.8 3.3 32 322-365 141-172 (457)
317 PRK07608 ubiquinone biosynthes 50.5 13 0.00028 39.3 3.0 32 322-365 6-37 (388)
318 PRK06407 ornithine cyclodeamin 50.3 36 0.00078 36.1 6.2 106 322-455 118-226 (301)
319 PLN02545 3-hydroxybutyryl-CoA 50.3 16 0.00034 38.0 3.4 32 322-365 5-36 (295)
320 TIGR01377 soxA_mon sarcosine o 50.1 15 0.00032 38.7 3.3 33 323-367 2-34 (380)
321 PRK12266 glpD glycerol-3-phosp 50.1 14 0.0003 41.8 3.2 33 322-366 7-39 (508)
322 TIGR00292 thiazole biosynthesi 49.7 9.4 0.0002 39.4 1.7 35 322-368 22-56 (254)
323 PRK12570 N-acetylmuramic acid- 49.6 55 0.0012 34.8 7.4 38 406-446 127-166 (296)
324 PRK12770 putative glutamate sy 49.6 16 0.00035 38.7 3.6 32 322-365 19-50 (352)
325 PLN00093 geranylgeranyl diphos 49.6 14 0.00031 41.1 3.2 21 322-342 40-60 (450)
326 PRK09853 putative selenate red 49.5 15 0.00031 45.5 3.5 33 321-365 539-571 (1019)
327 PRK12814 putative NADPH-depend 49.2 16 0.00034 42.8 3.6 33 321-365 193-225 (652)
328 PRK06834 hypothetical protein; 49.2 16 0.00035 41.0 3.6 35 320-366 2-36 (488)
329 PRK08773 2-octaprenyl-3-methyl 49.1 14 0.0003 39.5 2.9 32 322-365 7-38 (392)
330 PTZ00245 ubiquitin activating 49.0 15 0.00033 39.0 3.1 38 314-365 22-59 (287)
331 TIGR00465 ilvC ketol-acid redu 48.7 42 0.0009 36.0 6.4 25 319-343 1-25 (314)
332 TIGR00031 UDP-GALP_mutase UDP- 48.7 16 0.00034 40.2 3.3 31 323-365 3-33 (377)
333 PRK12779 putative bifunctional 48.7 15 0.00032 45.0 3.4 38 321-370 306-347 (944)
334 PRK06046 alanine dehydrogenase 48.6 1.2E+02 0.0027 32.3 10.0 106 322-455 130-237 (326)
335 TIGR01984 UbiH 2-polyprenyl-6- 48.6 14 0.0003 39.0 2.9 20 324-343 2-21 (382)
336 PRK11730 fadB multifunctional 48.4 15 0.00032 43.6 3.2 107 400-517 413-527 (715)
337 PRK07877 hypothetical protein; 48.4 27 0.00059 41.7 5.4 107 314-442 103-229 (722)
338 PRK08849 2-octaprenyl-3-methyl 48.0 16 0.00036 39.0 3.3 32 322-365 4-35 (384)
339 PRK01747 mnmC bifunctional tRN 47.9 17 0.00036 42.3 3.6 33 322-366 261-293 (662)
340 PRK14478 nitrogenase molybdenu 47.9 50 0.0011 37.2 7.2 139 154-351 203-349 (475)
341 COG1232 HemY Protoporphyrinoge 47.8 32 0.00069 38.8 5.6 105 322-499 1-111 (444)
342 PRK05714 2-octaprenyl-3-methyl 47.6 13 0.00028 39.8 2.5 32 322-365 3-34 (405)
343 PRK07588 hypothetical protein; 47.5 16 0.00035 38.9 3.2 20 323-342 2-21 (391)
344 PRK01438 murD UDP-N-acetylmura 47.5 22 0.00047 39.4 4.3 22 321-342 16-37 (480)
345 TIGR01789 lycopene_cycl lycope 47.1 21 0.00045 38.6 3.9 36 324-369 2-37 (370)
346 PF00743 FMO-like: Flavin-bind 47.1 20 0.00043 41.1 3.9 32 322-365 2-33 (531)
347 PRK08013 oxidoreductase; Provi 47.0 17 0.00037 39.1 3.2 32 322-365 4-35 (400)
348 KOG2018 Predicted dinucleotide 46.8 19 0.0004 39.3 3.4 38 319-367 72-109 (430)
349 PRK10157 putative oxidoreducta 46.8 16 0.00035 40.1 3.1 32 322-365 6-37 (428)
350 PRK11101 glpA sn-glycerol-3-ph 46.7 17 0.00038 41.4 3.4 32 322-365 7-38 (546)
351 TIGR01988 Ubi-OHases Ubiquinon 46.6 16 0.00035 38.3 2.9 31 324-366 2-32 (385)
352 PLN02463 lycopene beta cyclase 46.5 16 0.00035 40.8 3.1 32 322-365 29-60 (447)
353 TIGR03364 HpnW_proposed FAD de 46.3 17 0.00037 38.2 3.0 32 323-366 2-33 (365)
354 TIGR03315 Se_ygfK putative sel 46.3 17 0.00037 44.9 3.4 33 321-365 537-569 (1012)
355 PRK13369 glycerol-3-phosphate 46.2 16 0.00035 40.9 3.0 32 322-365 7-38 (502)
356 PF01946 Thi4: Thi4 family; PD 46.2 21 0.00046 37.0 3.5 36 322-369 18-53 (230)
357 PLN02676 polyamine oxidase 46.2 38 0.00083 38.2 5.9 22 322-343 27-48 (487)
358 PRK08244 hypothetical protein; 46.0 17 0.00038 40.3 3.2 22 322-343 3-24 (493)
359 PRK12778 putative bifunctional 45.8 21 0.00045 42.3 3.9 33 321-365 431-463 (752)
360 PF03447 NAD_binding_3: Homose 45.7 30 0.00066 30.8 4.2 94 328-447 1-94 (117)
361 COG1063 Tdh Threonine dehydrog 45.7 29 0.00062 37.3 4.7 59 292-364 143-201 (350)
362 PRK06416 dihydrolipoamide dehy 45.7 17 0.00038 39.9 3.1 33 322-366 5-37 (462)
363 PRK08243 4-hydroxybenzoate 3-m 45.4 20 0.00042 38.5 3.4 32 322-365 3-34 (392)
364 PRK13938 phosphoheptose isomer 45.4 61 0.0013 32.4 6.6 23 322-345 46-68 (196)
365 TIGR01692 HIBADH 3-hydroxyisob 45.3 44 0.00096 34.6 5.9 28 326-365 1-28 (288)
366 PRK06185 hypothetical protein; 45.2 18 0.00038 38.7 3.0 33 322-366 7-39 (407)
367 PF02056 Glyco_hydro_4: Family 45.0 17 0.00036 36.3 2.6 110 323-446 1-148 (183)
368 TIGR03143 AhpF_homolog putativ 44.9 18 0.00039 41.3 3.1 32 323-366 6-37 (555)
369 COG0476 ThiF Dinucleotide-util 44.8 14 0.0003 37.7 2.0 92 314-428 26-117 (254)
370 TIGR03846 sulfopy_beta sulfopy 44.7 2E+02 0.0042 28.2 9.9 78 253-342 2-81 (181)
371 PF02558 ApbA: Ketopantoate re 44.6 22 0.00048 32.6 3.2 31 324-366 1-31 (151)
372 PRK12416 protoporphyrinogen ox 44.5 15 0.00032 40.3 2.4 47 322-368 2-55 (463)
373 PRK08268 3-hydroxy-acyl-CoA de 44.5 20 0.00043 40.8 3.4 103 404-517 111-222 (507)
374 TIGR01317 GOGAT_sm_gam glutama 44.5 21 0.00046 40.0 3.6 32 322-365 144-175 (485)
375 cd01493 APPBP1_RUB Ubiquitin a 44.4 18 0.00039 40.5 3.0 37 315-365 17-53 (425)
376 PRK07251 pyridine nucleotide-d 44.2 21 0.00045 39.0 3.4 33 322-366 4-36 (438)
377 KOG2711 Glycerol-3-phosphate d 44.2 1.2E+02 0.0026 33.5 8.9 111 321-442 21-139 (372)
378 PRK00711 D-amino acid dehydrog 44.1 21 0.00045 38.2 3.3 31 323-365 2-32 (416)
379 TIGR03693 ocin_ThiF_like putat 44.1 64 0.0014 38.0 7.3 138 252-419 71-217 (637)
380 PRK08219 short chain dehydroge 44.0 58 0.0013 31.2 6.1 22 396-417 60-82 (227)
381 PRK07538 hypothetical protein; 44.0 20 0.00042 38.8 3.1 20 323-342 2-21 (413)
382 TIGR01350 lipoamide_DH dihydro 43.7 20 0.00044 39.2 3.3 30 323-364 3-32 (461)
383 COG1086 Predicted nucleoside-d 43.7 23 0.0005 41.1 3.7 147 242-415 157-334 (588)
384 PRK00048 dihydrodipicolinate r 43.7 1.3E+02 0.0028 31.0 9.0 88 322-440 2-90 (257)
385 PRK08850 2-octaprenyl-6-methox 43.6 20 0.00044 38.5 3.2 32 322-365 5-36 (405)
386 PRK05749 3-deoxy-D-manno-octul 43.6 80 0.0017 34.1 7.7 37 397-439 312-349 (425)
387 KOG2013 SMT3/SUMO-activating c 43.4 21 0.00046 40.7 3.3 73 321-411 12-84 (603)
388 PF12831 FAD_oxidored: FAD dep 43.4 20 0.00043 39.4 3.1 33 324-368 2-34 (428)
389 PRK07494 2-octaprenyl-6-methox 43.3 20 0.00043 38.1 3.0 33 322-366 8-40 (388)
390 PRK12809 putative oxidoreducta 43.2 22 0.00048 41.3 3.6 34 321-366 310-343 (639)
391 PF13241 NAD_binding_7: Putati 43.2 13 0.00028 32.9 1.4 36 319-366 5-40 (103)
392 COG2085 Predicted dinucleotide 43.1 62 0.0014 33.2 6.3 22 322-343 2-23 (211)
393 PRK07333 2-octaprenyl-6-methox 42.9 18 0.0004 38.4 2.7 21 323-343 3-23 (403)
394 COG0665 DadA Glycine/D-amino a 42.7 26 0.00056 36.8 3.7 36 321-368 4-39 (387)
395 TIGR03219 salicylate_mono sali 42.6 22 0.00047 38.4 3.2 21 323-343 2-22 (414)
396 TIGR01373 soxB sarcosine oxida 42.5 27 0.00058 37.5 3.9 36 322-367 31-66 (407)
397 TIGR01318 gltD_gamma_fam gluta 42.5 24 0.00053 39.3 3.7 33 321-365 141-173 (467)
398 PF03435 Saccharop_dh: Sacchar 42.2 11 0.00024 40.5 0.9 95 324-439 1-96 (386)
399 COG3349 Uncharacterized conser 42.1 18 0.0004 41.2 2.6 46 322-370 1-51 (485)
400 TIGR01771 L-LDH-NAD L-lactate 42.1 63 0.0014 34.3 6.5 124 326-471 1-141 (299)
401 cd03813 GT1_like_3 This family 42.1 1.2E+02 0.0027 33.5 9.1 37 397-439 363-399 (475)
402 cd05188 MDR Medium chain reduc 42.1 51 0.0011 32.0 5.5 48 303-365 120-167 (271)
403 PRK04690 murD UDP-N-acetylmura 42.0 23 0.0005 39.6 3.4 23 321-343 8-30 (468)
404 PRK05868 hypothetical protein; 42.0 22 0.00048 38.1 3.1 21 322-342 2-22 (372)
405 PRK06912 acoL dihydrolipoamide 42.0 22 0.00048 39.3 3.2 31 323-365 2-32 (458)
406 COG1179 Dinucleotide-utilizing 42.0 20 0.00044 37.7 2.7 41 319-370 28-68 (263)
407 PRK14989 nitrite reductase sub 42.0 36 0.00077 41.3 5.1 48 321-376 3-50 (847)
408 TIGR02053 MerA mercuric reduct 41.9 22 0.00048 39.1 3.2 31 324-366 3-33 (463)
409 PRK08010 pyridine nucleotide-d 41.9 22 0.00049 38.8 3.2 32 322-365 4-35 (441)
410 PRK14852 hypothetical protein; 41.8 20 0.00044 44.0 3.1 39 314-366 328-366 (989)
411 COG2423 Predicted ornithine cy 41.7 1.2E+02 0.0026 33.0 8.6 123 302-457 116-241 (330)
412 PRK11199 tyrA bifunctional cho 41.6 81 0.0017 34.4 7.4 32 322-365 99-131 (374)
413 cd01490 Ube1_repeat2 Ubiquitin 41.6 25 0.00055 39.5 3.6 37 323-365 1-37 (435)
414 PRK09897 hypothetical protein; 41.5 27 0.00058 40.2 3.9 35 322-366 2-36 (534)
415 COG0677 WecC UDP-N-acetyl-D-ma 41.5 1.6E+02 0.0035 33.3 9.5 136 232-443 273-421 (436)
416 PRK08132 FAD-dependent oxidore 41.2 22 0.00049 40.1 3.2 21 322-342 24-44 (547)
417 TIGR02360 pbenz_hydroxyl 4-hyd 40.9 25 0.00055 37.9 3.4 33 322-366 3-35 (390)
418 TIGR02437 FadB fatty oxidation 40.8 23 0.00049 42.1 3.2 107 400-517 413-527 (714)
419 PRK02472 murD UDP-N-acetylmura 40.6 25 0.00055 38.3 3.4 24 320-343 4-27 (447)
420 PRK08020 ubiF 2-octaprenyl-3-m 40.4 22 0.00048 37.8 2.8 32 322-365 6-37 (391)
421 PRK05976 dihydrolipoamide dehy 40.1 25 0.00054 39.0 3.3 32 322-365 5-36 (472)
422 cd05006 SIS_GmhA Phosphoheptos 40.1 92 0.002 29.8 6.8 22 406-429 101-122 (177)
423 cd01833 XynB_like SGNH_hydrola 39.7 90 0.002 28.5 6.4 64 189-267 18-81 (157)
424 PF02423 OCD_Mu_crystall: Orni 39.6 67 0.0015 34.2 6.3 106 322-455 129-238 (313)
425 COG1748 LYS9 Saccharopine dehy 39.6 31 0.00068 38.3 3.9 85 322-430 2-90 (389)
426 PRK07589 ornithine cyclodeamin 39.5 1.6E+02 0.0035 32.1 9.2 106 322-455 130-239 (346)
427 PLN00112 malate dehydrogenase 39.5 89 0.0019 35.4 7.4 136 322-473 101-256 (444)
428 COG3380 Predicted NAD/FAD-depe 39.4 29 0.00062 37.4 3.4 32 323-366 3-34 (331)
429 PRK10015 oxidoreductase; Provi 39.4 24 0.00053 38.9 3.0 33 322-366 6-38 (429)
430 PRK04128 1-(5-phosphoribosyl)- 39.4 78 0.0017 32.3 6.5 94 357-458 44-151 (228)
431 TIGR01214 rmlD dTDP-4-dehydror 39.2 49 0.0011 33.3 4.9 59 323-416 1-60 (287)
432 PRK08655 prephenate dehydrogen 39.1 89 0.0019 34.9 7.4 91 323-443 2-93 (437)
433 PRK04308 murD UDP-N-acetylmura 39.1 30 0.00066 38.0 3.7 22 321-342 5-26 (445)
434 PTZ00188 adrenodoxin reductase 39.0 36 0.00079 39.0 4.4 33 322-365 40-72 (506)
435 PRK06392 homoserine dehydrogen 38.9 1.4E+02 0.003 32.3 8.5 86 323-415 2-90 (326)
436 TIGR01286 nifK nitrogenase mol 38.9 96 0.0021 35.6 7.7 22 321-342 363-384 (515)
437 PF03486 HI0933_like: HI0933-l 38.8 27 0.00058 38.8 3.2 31 323-365 2-32 (409)
438 cd01967 Nitrogenase_MoFe_alpha 38.7 2E+02 0.0043 31.3 9.8 47 149-198 167-214 (406)
439 PRK03515 ornithine carbamoyltr 38.7 2.4E+02 0.0052 30.8 10.3 133 260-414 97-233 (336)
440 PRK06292 dihydrolipoamide dehy 38.6 29 0.00064 38.0 3.5 32 322-365 4-35 (460)
441 COG0562 Glf UDP-galactopyranos 38.6 40 0.00086 37.0 4.3 34 323-368 3-36 (374)
442 PF01408 GFO_IDH_MocA: Oxidore 38.6 40 0.00087 29.5 3.8 83 323-430 2-84 (120)
443 PRK06126 hypothetical protein; 38.5 29 0.00064 39.0 3.6 32 322-365 8-39 (545)
444 TIGR03169 Nterm_to_SelD pyridi 38.4 65 0.0014 34.0 5.9 41 322-368 146-186 (364)
445 KOG0743 AAA+-type ATPase [Post 38.4 45 0.00097 37.8 4.8 152 115-329 191-345 (457)
446 cd03819 GT1_WavL_like This fam 38.4 2.2E+02 0.0047 28.9 9.5 38 397-439 256-293 (355)
447 COG0654 UbiH 2-polyprenyl-6-me 38.4 27 0.00058 37.6 3.1 32 322-365 3-34 (387)
448 PRK05249 soluble pyridine nucl 38.1 28 0.0006 38.2 3.2 33 322-366 6-38 (461)
449 TIGR00393 kpsF KpsF/GutQ famil 38.1 1.2E+02 0.0025 30.7 7.5 25 323-349 2-26 (268)
450 PRK13984 putative oxidoreducta 37.9 31 0.00066 39.6 3.6 32 322-365 284-315 (604)
451 PRK07190 hypothetical protein; 37.9 28 0.00061 39.1 3.3 33 322-366 6-38 (487)
452 PRK01710 murD UDP-N-acetylmura 37.8 29 0.00063 38.5 3.3 23 321-343 14-36 (458)
453 PRK09585 anmK anhydro-N-acetyl 37.8 46 0.001 36.6 4.8 90 245-343 216-309 (365)
454 COG0421 SpeE Spermidine syntha 37.8 39 0.00083 35.9 4.1 100 322-438 78-186 (282)
455 PLN02927 antheraxanthin epoxid 37.6 23 0.00051 41.8 2.7 22 322-343 82-103 (668)
456 TIGR02733 desat_CrtD C-3',4' d 37.5 32 0.0007 38.1 3.6 36 321-368 1-36 (492)
457 PRK07208 hypothetical protein; 37.4 30 0.00066 38.0 3.4 22 322-343 5-26 (479)
458 PRK14694 putative mercuric red 37.3 32 0.0007 38.1 3.6 32 322-365 7-38 (468)
459 PRK14477 bifunctional nitrogen 37.2 73 0.0016 39.1 6.8 189 155-414 197-397 (917)
460 PRK13748 putative mercuric red 37.2 27 0.0006 39.4 3.1 32 322-365 99-130 (561)
461 PRK10262 thioredoxin reductase 37.1 30 0.00065 36.0 3.1 21 322-342 7-27 (321)
462 TIGR01408 Ube1 ubiquitin-activ 37.1 27 0.00058 43.3 3.1 39 314-366 20-58 (1008)
463 PRK01390 murD UDP-N-acetylmura 37.0 34 0.00073 37.8 3.7 25 319-343 7-31 (460)
464 TIGR03736 PRTRC_ThiF PRTRC sys 36.9 40 0.00086 35.1 4.0 43 322-367 12-56 (244)
465 PRK06567 putative bifunctional 36.9 30 0.00065 42.8 3.4 34 320-365 382-415 (1028)
466 KOG1495 Lactate dehydrogenase 36.8 45 0.00097 35.9 4.3 132 321-476 20-170 (332)
467 PRK14806 bifunctional cyclohex 36.6 88 0.0019 36.8 7.2 34 322-365 4-37 (735)
468 TIGR02441 fa_ox_alpha_mit fatt 36.6 28 0.0006 41.6 3.1 106 400-516 435-548 (737)
469 PRK06849 hypothetical protein; 36.6 22 0.00048 38.3 2.2 80 321-415 4-85 (389)
470 PF00732 GMC_oxred_N: GMC oxid 36.5 23 0.00049 36.1 2.1 35 324-369 3-37 (296)
471 PLN02568 polyamine oxidase 36.4 38 0.00082 38.9 4.1 22 322-343 6-27 (539)
472 PF09036 Bcr-Abl_Oligo: Bcr-Ab 36.4 28 0.0006 30.3 2.2 37 64-110 27-67 (79)
473 PLN02985 squalene monooxygenas 36.3 34 0.00073 38.9 3.6 32 322-365 44-75 (514)
474 PRK06183 mhpA 3-(3-hydroxyphen 36.2 30 0.00066 39.0 3.2 21 322-342 11-31 (538)
475 PF04820 Trp_halogenase: Trypt 36.2 34 0.00073 38.3 3.5 34 323-365 1-34 (454)
476 PLN02366 spermidine synthase 36.2 54 0.0012 35.1 4.9 103 322-440 93-204 (308)
477 PRK12775 putative trifunctiona 36.1 32 0.0007 42.5 3.6 33 321-365 430-462 (1006)
478 TIGR01181 dTDP_gluc_dehyt dTDP 36.1 1.2E+02 0.0025 30.6 7.2 78 323-416 1-83 (317)
479 KOG3851 Sulfide:quinone oxidor 35.9 27 0.00059 38.4 2.6 23 322-344 40-62 (446)
480 PRK06617 2-octaprenyl-6-methox 35.9 27 0.00059 37.2 2.7 32 322-365 2-33 (374)
481 PRK08294 phenol 2-monooxygenas 35.8 28 0.0006 40.6 2.9 33 322-365 33-65 (634)
482 PF02254 TrkA_N: TrkA-N domain 35.8 50 0.0011 28.8 3.9 30 324-365 1-30 (116)
483 COG0569 TrkA K+ transport syst 35.7 33 0.00072 34.8 3.1 102 323-446 2-105 (225)
484 PRK06545 prephenate dehydrogen 35.6 1.2E+02 0.0025 32.9 7.4 22 322-343 1-22 (359)
485 cd08237 ribitol-5-phosphate_DH 35.5 79 0.0017 33.3 6.0 33 322-364 165-197 (341)
486 cd04951 GT1_WbdM_like This fam 35.3 3.2E+02 0.0069 27.6 10.1 37 397-439 255-291 (360)
487 TIGR01421 gluta_reduc_1 glutat 35.2 30 0.00066 38.2 3.0 32 322-365 3-34 (450)
488 PRK02705 murD UDP-N-acetylmura 34.9 32 0.0007 37.7 3.1 22 322-343 1-22 (459)
489 PRK06199 ornithine cyclodeamin 34.7 1.2E+02 0.0026 33.4 7.4 88 322-426 156-250 (379)
490 cd08239 THR_DH_like L-threonin 34.6 74 0.0016 32.9 5.6 48 302-364 149-196 (339)
491 cd08231 MDR_TM0436_like Hypoth 34.6 76 0.0017 33.2 5.7 50 301-364 161-210 (361)
492 PRK02006 murD UDP-N-acetylmura 34.4 38 0.00082 38.0 3.6 25 319-343 5-29 (498)
493 cd03466 Nitrogenase_NifN_2 Nit 34.4 91 0.002 34.6 6.5 98 322-446 301-401 (429)
494 PF12227 DUF3603: Protein of u 34.1 19 0.00042 36.7 1.1 26 174-202 51-76 (214)
495 PLN02735 carbamoyl-phosphate s 34.1 51 0.0011 41.3 4.9 72 322-411 24-103 (1102)
496 PF02719 Polysacc_synt_2: Poly 33.7 29 0.00064 37.1 2.4 76 324-416 1-87 (293)
497 TIGR00562 proto_IX_ox protopor 33.6 41 0.00089 36.6 3.6 22 322-343 3-24 (462)
498 KOG1399 Flavin-containing mono 33.6 35 0.00076 38.5 3.1 24 319-342 4-27 (448)
499 KOG0024 Sorbitol dehydrogenase 33.5 52 0.0011 36.0 4.3 48 302-364 155-202 (354)
500 PRK13403 ketol-acid reductoiso 33.5 43 0.00094 36.5 3.7 30 314-343 9-38 (335)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.7e-211 Score=1669.26 Aligned_cols=542 Identities=53% Similarity=0.891 Sum_probs=530.1
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhccCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHH
Q 007499 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (601)
Q Consensus 25 ~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~ 104 (601)
.+..+++|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccceeeeeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCcccc
Q 007499 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (601)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rIL 184 (601)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhC-
Q 007499 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (601)
Q Consensus 185 GLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~- 263 (601)
||||||++|||||+|||+|||+||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeE--EeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 007499 264 PKAI--FEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 341 (601)
Q Consensus 264 P~~l--~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~ 341 (601)
|+++ ||||+++|||++|+|||+++|||||||||||+|+|||||+|+|+||++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 9997 999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhcCCChhhhcCeEEEEecCccccCCCC-CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCC
Q 007499 342 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 420 (601)
Q Consensus 342 ~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F 420 (601)
.+|+ ++|+|+|||+++|||+|++|||+++|+ +++++|++|||+++++ ++|+|||+.||||||||+|++||+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 679999999999999999999999996 9999999999998654 6899999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHH
Q 007499 421 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 500 (601)
Q Consensus 421 t~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~ 500 (601)
||||||+|++ +|||||||||||||++|||||||||+||+||||||||||||||+|+ ||+|+||||||+|+|||||||+
T Consensus 404 teevl~~Ma~-~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~-gK~~~pgQ~NN~yiFPGi~Lg~ 481 (582)
T KOG1257|consen 404 TEEVLRAMAK-SNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYN-GKVYVPGQGNNAYIFPGIGLGV 481 (582)
T ss_pred CHHHHHHHHh-cCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeC-CcEecccCCceeEecchHHHHH
Confidence 9999999975 9999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHcCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHH
Q 007499 501 LLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEE 580 (601)
Q Consensus 501 l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~~~~~~d 580 (601)
+++++++|+|+||++||++||+.+++++++.|.|||++++||+||.+||++|+++|+++|+|+.+ +. |+|
T Consensus 482 vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~---------p~-P~d 551 (582)
T KOG1257|consen 482 VLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRY---------PE-PKD 551 (582)
T ss_pred HHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccC---------CC-ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999843 33 789
Q ss_pred HHHHHHhCCccCCCCCCc
Q 007499 581 TVEYVTRSMWFPIYSPLV 598 (601)
Q Consensus 581 l~~~i~~~mw~P~Y~~~v 598 (601)
+++|++++||+|+|++++
T Consensus 552 ~~~~~~~~~y~~~Y~~~~ 569 (582)
T KOG1257|consen 552 KEKFIEESMYNPEYRNSL 569 (582)
T ss_pred HHHHHHhccCCccccccc
Confidence 999999999999999976
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-208 Score=1685.44 Aligned_cols=552 Identities=46% Similarity=0.794 Sum_probs=532.9
Q ss_pred CCCCceeeccCccccccCCCCCcCCCCChHHhhccCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHH
Q 007499 21 AIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWR 100 (601)
Q Consensus 21 ~~~~~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~ 100 (601)
...+.+.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+
T Consensus 6 ~~~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~ 75 (563)
T PRK13529 6 KKKRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHI 75 (563)
T ss_pred CCCcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHH
Confidence 344556677899999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHhhcccceeeeeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecC
Q 007499 101 ILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180 (601)
Q Consensus 101 ~L~~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG 180 (601)
||++||+|||+||||++++|++||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||
T Consensus 76 ~L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG 155 (563)
T PRK13529 76 YLRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDG 155 (563)
T ss_pred HHHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHH
Q 007499 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVH 260 (601)
Q Consensus 181 ~rILGLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~ 260 (601)
||||||||||++||||||||++|||+||||||++|||||||||||||+||+||+|+||||||++|++||+|+||||++|+
T Consensus 156 ~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~ 235 (563)
T PRK13529 156 ERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVK 235 (563)
T ss_pred ceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeE--EeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHH
Q 007499 261 ARWPKAI--FEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLK 338 (601)
Q Consensus 261 ~~~P~~l--~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ 338 (601)
++||+++ ||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+
T Consensus 236 ~~~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~ 312 (563)
T PRK13529 236 RRFPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIAD 312 (563)
T ss_pred HhCCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHH
Confidence 9999987 999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCC---CCCcccCCCHHHHhcccCCcEEEeecC
Q 007499 339 MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD---FMGLREGASLLEVVRKVKPHVLLGLSG 415 (601)
Q Consensus 339 ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~---~~~~~~~~~L~e~V~~vkptvLIG~S~ 415 (601)
||+++|+ ++|+|+|||++|||||||+|||+++|++|+++|++|||+.++ |.......+|+|||+.+|||||||+|+
T Consensus 313 ll~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~ 391 (563)
T PRK13529 313 QIVAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSG 391 (563)
T ss_pred HHHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecC
Confidence 9999999 689999999999999999999999999999999999998654 221123479999999999999999999
Q ss_pred CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchh
Q 007499 416 VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPG 495 (601)
Q Consensus 416 ~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPG 495 (601)
++|+|||||||+|++ +|||||||||||||++|||||||||+||+|||||||||||+||+|+ |++++||||||+|||||
T Consensus 392 ~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPG 469 (563)
T PRK13529 392 QPGAFTEEIVKEMAA-HCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN-GKTYPIGQCNNAYIFPG 469 (563)
T ss_pred CCCCCCHHHHHHHHh-cCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC-CeEeccCcCcceeeccc
Confidence 999999999999975 9999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred hHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCC
Q 007499 496 IGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKH 575 (601)
Q Consensus 496 iglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~~ 575 (601)
||||+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||.||+++|+++|+|+ .
T Consensus 470 iglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~-----------~ 538 (563)
T PRK13529 470 LGLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLAR-----------E 538 (563)
T ss_pred chhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCC-----------C
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 1
Q ss_pred CCHHHHHHHHHhCCccCCCCCCcc
Q 007499 576 MSKEETVEYVTRSMWFPIYSPLVH 599 (601)
Q Consensus 576 ~~~~dl~~~i~~~mw~P~Y~~~v~ 599 (601)
..++|+++||+++||+|+|+|++.
T Consensus 539 ~~~~~~~~~i~~~~w~P~Y~~~~~ 562 (563)
T PRK13529 539 TSDEDLEQAIEDNMWQPEYRPYRR 562 (563)
T ss_pred CCHHHHHHHHHhcCcCCCCccccC
Confidence 247899999999999999999864
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.3e-205 Score=1660.28 Aligned_cols=549 Identities=47% Similarity=0.826 Sum_probs=525.6
Q ss_pred CCCCceeeccCccccccCCCCCcCCCCChHHhhccCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHH
Q 007499 21 AIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWR 100 (601)
Q Consensus 21 ~~~~~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~ 100 (601)
.++..+.+..+|.++|+||++|||||||.+||++|||||||||+|+|+|+|++|||.||++++ ++|+||+
T Consensus 8 ~~~~~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~ 77 (559)
T PTZ00317 8 HSKEKVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQ 77 (559)
T ss_pred ccccccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHH
Confidence 344445667899999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHhhcccceeeeeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecC
Q 007499 101 ILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180 (601)
Q Consensus 101 ~L~~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG 180 (601)
||++||++||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|.++|+|||.++|++||||||
T Consensus 78 ~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG 157 (559)
T PTZ00317 78 FLRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDG 157 (559)
T ss_pred HHHHHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHH
Q 007499 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVH 260 (601)
Q Consensus 181 ~rILGLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~ 260 (601)
||||||||||++||||||||++|||+||||||++|||||||||||||+||+||+||||||+|++|++||+|+||||+||+
T Consensus 158 ~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~ 237 (559)
T PTZ00317 158 SRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVS 237 (559)
T ss_pred ccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeE--EeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHH
Q 007499 261 ARWPKAI--FEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLK 338 (601)
Q Consensus 261 ~~~P~~l--~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ 338 (601)
++||+++ ||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+
T Consensus 238 ~~~P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~ 314 (559)
T PTZ00317 238 SRWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVAN 314 (559)
T ss_pred HhCCCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHH
Confidence 9999987 999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC-CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCC
Q 007499 339 MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 417 (601)
Q Consensus 339 ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~ 417 (601)
||+++|+ ++|+|+|||++|||||||+|||+++|++ |+++|++|||+..+... ....+|+|||+.+|||||||+|+++
T Consensus 315 ll~~~m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~ 392 (559)
T PTZ00317 315 NIADLAA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVG 392 (559)
T ss_pred HHHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCC
Confidence 9999999 6899999999999999999999999965 99999999997422110 1257999999999999999999999
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhH
Q 007499 418 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 497 (601)
Q Consensus 418 g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 497 (601)
|+|||||||+|++ +|||||||||||||++|||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||
T Consensus 393 g~Ft~evv~~Ma~-~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGig 470 (559)
T PTZ00317 393 GVFTEEVVKTMAS-NVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLN-GKTIQPSQGNNLYVFPGVG 470 (559)
T ss_pred CCCCHHHHHHHHh-cCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccC-CeeeccCcCcceeeccchh
Confidence 9999999999975 9999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCC
Q 007499 498 LGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMS 577 (601)
Q Consensus 498 lG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~~~~ 577 (601)
||+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||+||+++|+++|+|+.. ..+.+
T Consensus 471 lG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~-------~~~~~ 543 (559)
T PTZ00317 471 LGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNK-------DLPDN 543 (559)
T ss_pred hhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccC-------CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999721 11334
Q ss_pred HHHHHHHHHhCCccCC
Q 007499 578 KEETVEYVTRSMWFPI 593 (601)
Q Consensus 578 ~~dl~~~i~~~mw~P~ 593 (601)
++|+++||+++||+|.
T Consensus 544 ~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 544 RDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHHHHHhcCcCCC
Confidence 5799999999999995
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.1e-204 Score=1658.82 Aligned_cols=539 Identities=58% Similarity=0.954 Sum_probs=524.6
Q ss_pred ccCccccccCCCCCcCCCCChHHhhccCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHhhcc
Q 007499 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (601)
Q Consensus 29 ~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~L~~~ 108 (601)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cceeeeeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccccCC
Q 007499 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (601)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGD 188 (601)
||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhC-CCeE
Q 007499 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (601)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~l 267 (601)
||++||||||||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8887
Q ss_pred --EeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 007499 268 --FEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 345 (601)
Q Consensus 268 --~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 345 (601)
||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HhcCCChhhhcCeEEEEecCccccCCCCC-CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHH
Q 007499 346 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 424 (601)
Q Consensus 346 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ev 424 (601)
+++|+|+|||++||||||++|||+++|++ |+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 54699999999999999999999999976 9999999999853 3579999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcC
Q 007499 425 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 504 (601)
Q Consensus 425 v~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~ 504 (601)
||+|++ ||+|||||||||||+++||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||||+++++
T Consensus 420 i~~Ma~-~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 420 LEAMAS-LNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYN-GKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHHh-cCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeC-CeeecCccccceeeccchhhHHHhcC
Confidence 999975 9999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHHHHHH
Q 007499 505 ARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEETVEY 584 (601)
Q Consensus 505 a~~itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~~~~~~dl~~~ 584 (601)
|++|||+||++||++||+++++++++.+.|||++++||+||.+||+||+++|+++|+|+. ...++++.+|
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~----------~~~~~~~~~~ 567 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATR----------LPRPEDLVEY 567 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCC----------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999971 1246899999
Q ss_pred HHhCCccCCCCCCc
Q 007499 585 VTRSMWFPIYSPLV 598 (601)
Q Consensus 585 i~~~mw~P~Y~~~v 598 (601)
|+++||+|+|+|++
T Consensus 568 i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 568 AESCMYSPVYRPYR 581 (581)
T ss_pred HHHcCcCCCCCCCC
Confidence 99999999999874
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=8.1e-117 Score=931.68 Aligned_cols=425 Identities=35% Similarity=0.514 Sum_probs=379.4
Q ss_pred cccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHhhcccceeeeeeeccCcccccceeeccchHHHHHHHhhcc
Q 007499 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (601)
Q Consensus 65 v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~ 144 (601)
++|+| |.+|+|.++..+.. .+|++|.|+ ++|+++||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998872 489999999 89999999999999999999999999999999999988
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccccCCCC-CccccccchhhhHHHhhcCCCCCceecEEeecc
Q 007499 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLG-VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (601)
Q Consensus 145 r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvG 223 (601)
++++ ++.+ ++++||||||||||||||||| .+||||||||++|||+||||| ++|||||+|
T Consensus 67 ~~~~----~yt~-------------~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY----SYTA-------------RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh----hcCC-------------CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 8886 3333 345899999999999999999 589999999999999999999 999999999
Q ss_pred CCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeEEeeCCCChHHHHHHHHhc--cCCccccCcchhHHHH
Q 007499 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRK--RFCMFNDDIQGTAGVA 301 (601)
Q Consensus 224 TnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l~EDf~~~~Af~iL~ryr~--~~~~FnDDiQGTaav~ 301 (601)
|||+ +++||+++...||+..+||++.+.||.++++.|. .||||||||||||+|+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~ 182 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVT 182 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccccHHHHHH
Confidence 9986 7889999999999988777777777777666555 5999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC--CChhh
Q 007499 302 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAA 379 (601)
Q Consensus 302 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~--l~~~k 379 (601)
||||+||+|++|++|+| +||||+|||+||+|||+||+++|+ ++ ++||+|||+|+|+++|++ ++++|
T Consensus 183 lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~~k 250 (432)
T COG0281 183 LAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQKK 250 (432)
T ss_pred HHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccchHH
Confidence 99999999999999999 999999999999999999999766 22 799999999999999976 56666
Q ss_pred hcccc-ccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcc
Q 007499 380 APFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 458 (601)
Q Consensus 380 ~~fa~-~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~w 458 (601)
..+|. +..+| .+ .+++ .+||||||+|++ |+||+|+||+|+ ++||||||||||+ |++||||.+|
T Consensus 251 ~~~a~~~~~~~------~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma----~~PiIfalaNP~p--Ei~Pe~a~~~ 314 (432)
T COG0281 251 YAKAIEDTGER------TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA----KHPIIFALANPTP--EITPEDAKEW 314 (432)
T ss_pred HHHHHhhhccc------cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc----cCCEEeecCCCCc--cCCHHHHhhc
Confidence 66664 43333 21 3344 569999999997 999999999996 4699999999996 9999999999
Q ss_pred cCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCC
Q 007499 459 AGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSI 538 (601)
Q Consensus 459 t~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l 538 (601)
++|++|+||| |+++|+|+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.. .+.|+|++
T Consensus 315 ~~~aaivaTG-----------rsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~ 382 (432)
T COG0281 315 GDGAAIVATG-----------RSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPP 382 (432)
T ss_pred CCCCEEEEeC-----------CCCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCC
Confidence 9999999996 55666799999999999999999999999999999999999999987665 78999999
Q ss_pred CCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHHHHHHHHhCCccCCCCCC
Q 007499 539 DSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPL 597 (601)
Q Consensus 539 ~~ireVs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~~~~~~dl~~~i~~~mw~P~Y~~~ 597 (601)
+++|.+|. ||.||+++|+++|+|+. ...+.++++++++..+|.|.|.++
T Consensus 383 ~d~r~~~~-vA~AVa~aA~~~GvA~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 383 FDPRVISR-VAVAVAKAAMEEGVARR---------PIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred CchhHHHH-HHHHHHHHHHHcCCccC---------CCCCHHHHHHHHHHHhcCcccccC
Confidence 99998888 99999999999999982 234467899999999999999875
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1e-107 Score=922.18 Aligned_cols=363 Identities=30% Similarity=0.478 Sum_probs=331.7
Q ss_pred eeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccccCCCCCcc
Q 007499 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (601)
Q Consensus 114 y~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G 193 (601)
-++.+.+.++ |.++|||||+++|++ |+++|+++| ++.+|+ +.|+|||||||||||||+|++|
T Consensus 27 ~~~~~~~~~d-l~l~YtPgVa~~c~~---i~~~p~~~~-~~t~r~-------------n~v~VvtdG~~vLGLGdiG~~a 88 (764)
T PRK12861 27 ASKPLVTQRD-LALAYTPGVASACEE---IAADPLNAF-RFTSRG-------------NLVGVITNGTAVLGLGNIGALA 88 (764)
T ss_pred eccccCChHH-ceeecCCchHHHHHH---HHhChHhhh-hhhccC-------------cEEEEEecchhhccCCCcCccc
Confidence 6777888888 699999999999999 557777763 444443 4699999999999999999975
Q ss_pred -ccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE-EeeC
Q 007499 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-FEDF 271 (601)
Q Consensus 194 -m~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l-~EDf 271 (601)
|||||||++|||+||||| +||+|||| +|| |+|| |||++++.+||. + ||||
T Consensus 89 ~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~-i~lED~ 140 (764)
T PRK12861 89 SKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG-INLEDI 140 (764)
T ss_pred ccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC-ceeeec
Confidence 999999999999999999 67778887 788 7899 999999999998 7 9999
Q ss_pred CCChHHHHHHHHhc--cCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcC
Q 007499 272 QMKWAFETLERYRK--RFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAG 349 (601)
Q Consensus 272 ~~~~Af~iL~ryr~--~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~G 349 (601)
++||||+||+|||+ ++|||||||||||+|+|||+|||+|++|++|+| +||||+|||+||+|||++|+. .|
T Consensus 141 ~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~~-----~G 212 (764)
T PRK12861 141 KAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLVD-----LG 212 (764)
T ss_pred cCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHHH-----cC
Confidence 99999999999999 499999999999999999999999999999999 999999999999999999865 58
Q ss_pred CChhhhcCeEEEEecCccccCCCCC-CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007499 350 NNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 428 (601)
Q Consensus 350 ls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 428 (601)
+++| |||+|||+|||+++|++ |+++|++||++.+ ..||+|+|++ +|||||+|+ +|+||+|+|++|
T Consensus 213 ~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~ft~e~v~~M 278 (764)
T PRK12861 213 LPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAM 278 (764)
T ss_pred CChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHh
Confidence 8864 99999999999999976 9999999999852 3689999999 799999998 999999999999
Q ss_pred hhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCccc
Q 007499 429 RESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFI 508 (601)
Q Consensus 429 a~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~i 508 (601)
+ +|||||||||||+ ||+||||++ |+|+||||| ||+++|||+||+|+|||||+|++++||++|
T Consensus 279 a----~~PIIFaLsNPtp--E~~pe~a~~-~~g~aivaT-----------Grs~~pnQ~NN~l~FPgi~~Gal~~~a~~I 340 (764)
T PRK12861 279 A----ARPLILALANPTP--EIFPELAHA-TRDDVVIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGATTI 340 (764)
T ss_pred c----cCCEEEECCCCCc--cCCHHHHHh-cCCCEEEEe-----------CCcCCCCccceeeecchhhHHHHHcCCccC
Confidence 6 5999999999997 999999987 999999999 699999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCC------------CC--ccccCCCCcchhhHHHHHHHHHHHHHcCccC
Q 007499 509 TDGMLQQAAECLASYMTDEEIP------------KG--ILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563 (601)
Q Consensus 509 td~m~~aAA~aLA~~v~~~~l~------------~g--~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~ 563 (601)
||+|+++||++||+++++++++ .+ .|+|+..+ ++||.+||.||+++|+++|+|+
T Consensus 341 ~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~ 408 (764)
T PRK12861 341 TREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVAT 408 (764)
T ss_pred CHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999987533 44 45597777 5799999999999999999997
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=6.4e-107 Score=920.61 Aligned_cols=361 Identities=30% Similarity=0.457 Sum_probs=330.2
Q ss_pred eeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccccCCCCCcc
Q 007499 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (601)
Q Consensus 114 y~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G 193 (601)
-++.+++.++ |.++|||||+++|+++. + |++.++++. .+.+.+||||||||||||||+|++|
T Consensus 31 ~~~~~~~~~d-l~~~ytpgv~~~~~~i~---~----------~~~~~~~~t----~~~n~v~vvtdg~~vLGlGd~G~~~ 92 (763)
T PRK12862 31 PTKPLANQRD-LALAYSPGVAAPCLEIA---A----------DPANAARYT----SRGNLVAVVSNGTAVLGLGNIGPLA 92 (763)
T ss_pred ecCCCCCHHH-ceeeeCCchHHHHHHHH---h----------ChHhhhhcc----cCCcEEEEEechhhhccccccCccc
Confidence 6777888878 69999999999999976 3 554444333 2567899999999999999999985
Q ss_pred -ccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCe--E-Ee
Q 007499 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA--I-FE 269 (601)
Q Consensus 194 -m~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~--l-~E 269 (601)
|||||||++|||+||||| +||+||||+ || ||||++|+++||++ + ||
T Consensus 93 ~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~f~~i~~E 142 (763)
T PRK12862 93 SKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPTFGGINLE 142 (763)
T ss_pred ccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCCcceeeee
Confidence 999999999999999999 666667775 75 99999999999996 3 99
Q ss_pred eCCCChHHHHHHHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHh
Q 007499 270 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 347 (601)
Q Consensus 270 Df~~~~Af~iL~ryr~~--~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 347 (601)
||+++|||+||+|||++ +|||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 143 D~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 214 (763)
T PRK12862 143 DIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLLVS----- 214 (763)
T ss_pred cccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHHHH-----
Confidence 99999999999999998 89999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEecCccccCCCCC-CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 348 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 348 ~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
.|+++ +|||||||+|||+++|++ |+++|++||++.+ ..+|+|+|+. ||||||+|+ +|+||+|+|+
T Consensus 215 ~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~ 280 (763)
T PRK12862 215 LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGVLKPEMVK 280 (763)
T ss_pred cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 58874 799999999999999975 9999999999852 3689999999 999999999 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCc
Q 007499 427 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 506 (601)
Q Consensus 427 ~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 506 (601)
+|+ +|||||||||||+ ||+||||++||+| ||||| ||+++||||||+|+|||||+|++++||+
T Consensus 281 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~at-----------Grs~~p~Q~NN~~~FPgi~~g~l~~~a~ 342 (763)
T PRK12862 281 KMA----PRPLIFALANPTP--EILPEEARAVRPD-AIIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGAT 342 (763)
T ss_pred Hhc----cCCEEEeCCCCcc--cCCHHHHHHhcCC-EEEEE-----------CCcCCCCcccceeeccchhhhHHhcCCe
Confidence 995 7999999999996 9999999999999 99999 5999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCC--------------CCCCccccCCCCcchhhHHHHHHHHHHHHHcCccC
Q 007499 507 FITDGMLQQAAECLASYMTDEE--------------IPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563 (601)
Q Consensus 507 ~itd~m~~aAA~aLA~~v~~~~--------------l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~ 563 (601)
+|||+|+++||++||+++++++ +..++|||+..+ ++||..||.||+++|+++|+|+
T Consensus 343 ~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~ 412 (763)
T PRK12862 343 TINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVAT 412 (763)
T ss_pred eCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999873 345569997777 6899999999999999999997
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=3.2e-106 Score=910.68 Aligned_cols=361 Identities=31% Similarity=0.481 Sum_probs=336.0
Q ss_pred eeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccccCCCCCc-
Q 007499 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ- 192 (601)
Q Consensus 114 y~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~- 192 (601)
-++.+.+.++ |+++|||||+++|+ +|+++|+++| ++.+|| +.++|||||||||||||+|++
T Consensus 23 ~~~~~~~~~d-l~~~Ytpgv~~~c~---~i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a 84 (752)
T PRK07232 23 PTKPLATQRD-LSLAYSPGVAAPCL---EIAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALA 84 (752)
T ss_pred eccccCChhh-cceecCCchHHHHH---HHHhChhhcc-ccccCC-------------cEEEEEccchhhcccccccccc
Confidence 5777788877 69999999999999 5568999999 777766 359999999999999999997
Q ss_pred cccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCe-E--Ee
Q 007499 193 GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-I--FE 269 (601)
Q Consensus 193 Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-l--~E 269 (601)
||||||||++|||+||||| ++|+||||+ | +||||++|+.+||++ + ||
T Consensus 85 ~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~~g~i~~E 134 (752)
T PRK07232 85 SKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPTFGGINLE 134 (752)
T ss_pred CccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCCccEEeee
Confidence 9999999999999999999 566667775 4 799999999999998 3 99
Q ss_pred eCCCChHHHHHHHHhcc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHh
Q 007499 270 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 347 (601)
Q Consensus 270 Df~~~~Af~iL~ryr~~--~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 347 (601)
||++||||+||+|||++ +|||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 135 D~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 206 (752)
T PRK07232 135 DIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLLVA----- 206 (752)
T ss_pred ecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHHHH-----
Confidence 99999999999999998 79999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 348 AGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 348 ~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
.|++ ++|||+|||+|||+++| ++|+++|++||++.+ ..+|+|+|+. ||||||+|+ +|+||+|+|+
T Consensus 207 ~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~ 272 (752)
T PRK07232 207 LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGVLTPEMVK 272 (752)
T ss_pred cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 5887 57999999999999999 579999999999742 3689999999 999999999 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCc
Q 007499 427 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 506 (601)
Q Consensus 427 ~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 506 (601)
+|+ +|||||||||||+ ||+||||++||+| +|||| ||+++|||+||+|+|||||+|++++||+
T Consensus 273 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~at-----------Grs~~pnQ~NN~~~FPgi~~g~l~~~a~ 334 (752)
T PRK07232 273 SMA----DNPIIFALANPDP--EITPEEAKAVRPD-AIIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGAT 334 (752)
T ss_pred Hhc----cCCEEEecCCCCc--cCCHHHHHHhcCC-EEEEE-----------CCcCCCCcccceeecchhhHHHHHcCCc
Confidence 995 6999999999997 9999999999999 99999 5999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCC--------------CCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccC
Q 007499 507 FITDGMLQQAAECLASYMTDE--------------EIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 563 (601)
Q Consensus 507 ~itd~m~~aAA~aLA~~v~~~--------------~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G~A~ 563 (601)
+|||+|+++||++||++++++ ++...+|+|++++-| |+..||.||+++|+++|+|+
T Consensus 335 ~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~~~-~~~~va~av~~~a~~~g~a~ 404 (752)
T PRK07232 335 TINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFDPR-LIVKIAPAVAKAAMDSGVAT 404 (752)
T ss_pred cCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCChh-HHHHHHHHHHHHHHhhCccc
Confidence 999999999999999999986 678899999999965 99999999999999999998
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.7e-97 Score=757.05 Aligned_cols=279 Identities=53% Similarity=0.849 Sum_probs=267.2
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 294 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 294 iQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
|||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH
Q 007499 374 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 453 (601)
Q Consensus 374 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 453 (601)
+|+++|++||++.++ .+..+|+|+|+++|||||||+|+++|+||+|+||+|++ ||+|||||||||||++||||||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~~E~~pe 151 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK-SNERPIIFALSNPTSKAECTAE 151 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCCCCEEEECCCcCCccccCHH
Confidence 899999999997542 24579999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCCc
Q 007499 454 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI 533 (601)
Q Consensus 454 da~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~ 533 (601)
|||+||+|||||||||||+||+|+ ||+++||||||+|+|||||||+++++|++|||+||++||++||+++++++++.+.
T Consensus 152 ~a~~~t~G~ai~ATGsPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~ 230 (279)
T cd05312 152 DAYKWTDGRALFASGSPFPPVEYN-GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGR 230 (279)
T ss_pred HHHHhhcCCEEEEeCCCCCCeeeC-CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCe
Confidence 999999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHHHHHHHHhCCccC
Q 007499 534 LYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEETVEYVTRSMWFP 592 (601)
Q Consensus 534 l~P~l~~ireVs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~~~~~~dl~~~i~~~mw~P 592 (601)
|||+++++|+||.+||.||+++|+++|+|+. ...++|+++||+++||+|
T Consensus 231 l~P~~~~~r~vs~~VA~aVa~~A~~~gla~~----------~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 231 LYPPLSNIREISAQIAVAVAKYAYEEGLATR----------YPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred eeCCCccHhHHHHHHHHHHHHHHHHcCCCCC----------CCCHHHHHHHHHhCccCC
Confidence 9999999999999999999999999999972 123579999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=6.8e-95 Score=731.40 Aligned_cols=255 Identities=48% Similarity=0.792 Sum_probs=229.7
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 294 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 294 iQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|++||++||||+|++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH
Q 007499 374 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 453 (601)
Q Consensus 374 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 453 (601)
+|+++|++|||+.+++. ...||+|+|+++|||||||+|+++|+||+||||+|++ +|||||||||||||+++|||||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~-~~erPIIF~LSNPt~~aE~~pe 152 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK-HNERPIIFPLSNPTPKAECTPE 152 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH-HSSSEEEEE-SSSCGGSSS-HH
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc-cCCCCEEEECCCCCCcccCCHH
Confidence 99999999999876532 2369999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCCc
Q 007499 454 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI 533 (601)
Q Consensus 454 da~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~ 533 (601)
|||+||+|+|||||||||+||+| +||+++||||||+|||||||||++++||++|||+||++||++||++++++++..+.
T Consensus 153 da~~~t~g~ai~AtGSpf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~ 231 (255)
T PF03949_consen 153 DAYEWTDGRAIFATGSPFPPVEY-NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGR 231 (255)
T ss_dssp HHHHTTTSEEEEEESS----EEE-TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTB
T ss_pred HHHhhCCceEEEecCCccCCeee-CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCc
Confidence 99999999999999999999999 49999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhHHHHHHHHHHHH
Q 007499 534 LYPSIDSIRDITAEVGAAVLRAAV 557 (601)
Q Consensus 534 l~P~l~~ireVs~~VA~aVa~~A~ 557 (601)
|||+++++|+||.+||.||+++||
T Consensus 232 l~P~~~~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 232 LYPPLFDIREVSARVAAAVAKQAI 255 (255)
T ss_dssp SS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHhHHHHHHHHHHHHHhC
Confidence 999999999999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.7e-91 Score=706.03 Aligned_cols=251 Identities=39% Similarity=0.663 Sum_probs=243.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 294 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 294 iQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 7999999999999999999999999 999999999999999999999999 689999999999999999999999999
Q ss_pred CCChhhhc---cccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCC
Q 007499 374 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 450 (601)
Q Consensus 374 ~l~~~k~~---fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~ 450 (601)
+|+++|++ |+++.. +..+|+|+|+.+|||||||+|+++|+||+|+||+|++ +|+|||||||||||++|||
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE~ 149 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAE-INERPVIFALSNPTSKAEC 149 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhh-cCCCCEEEECCCcCCcccc
Confidence 89999999 777643 3579999999999999999999999999999999975 9999999999999999999
Q ss_pred CHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCC
Q 007499 451 TAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIP 530 (601)
Q Consensus 451 tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~ 530 (601)
||||||+||+|||||||||||+||+|+ |++|+|+||||+|||||||||+++++|++|||+||++||++||+++++++++
T Consensus 150 tpe~a~~~t~G~ai~AtGspf~pv~~~-g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~ 228 (254)
T cd00762 150 TAEEAYTATEGRAIFASGSPFHPVELN-GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLK 228 (254)
T ss_pred CHHHHHhhcCCCEEEEECCCCCCcccC-CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCC
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcchhhHHHHHHHHHHH
Q 007499 531 KGILYPSIDSIRDITAEVGAAVLRAA 556 (601)
Q Consensus 531 ~g~l~P~l~~ireVs~~VA~aVa~~A 556 (601)
.+.|||++++||+||.+||.+|+++|
T Consensus 229 ~~~i~P~~~~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 229 PGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred CCceeCCcchhhhHHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.1e-81 Score=604.50 Aligned_cols=179 Identities=61% Similarity=1.127 Sum_probs=160.6
Q ss_pred hcccceeeeeeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccc
Q 007499 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (601)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 185 (601)
|++||+|||+++.+|++|+||||||||||+||++||++||+|+|||+|++|+|+|.++|+|||.++||+|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhC-C
Q 007499 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (601)
Q Consensus 186 LGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P 264 (601)
|||+|++|||||+||++|||+||||||++||||||||||||++||+||+|+||||+|++|++|++|+||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CeE--EeeCCCChHHHHHHHHh
Q 007499 265 KAI--FEDFQMKWAFETLERYR 284 (601)
Q Consensus 265 ~~l--~EDf~~~~Af~iL~ryr 284 (601)
+++ ||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 887 99999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=3.1e-56 Score=443.74 Aligned_cols=225 Identities=32% Similarity=0.503 Sum_probs=205.3
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 294 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 294 iQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
+||||+|++||+++|+|.+|.++++ +||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 7999999999999999999999999 999999999999999999965 4776 579999999999999984
Q ss_pred -CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCH
Q 007499 374 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 452 (601)
Q Consensus 374 -~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tp 452 (601)
+|.++|++|+++... . ....+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||++ ||++
T Consensus 69 ~~L~~~~~~la~~~~~-~--~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~----~~~ivf~lsnP~~--e~~~ 136 (226)
T cd05311 69 DDLNPDKNEIAKETNP-E--KTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA----KDPIVFALANPVP--EIWP 136 (226)
T ss_pred hhhhHHHHHHHHHhcc-C--cccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC----CCCEEEEeCCCCC--cCCH
Confidence 599999999986421 0 111479899987 999999998 9999999999994 7999999999996 9999
Q ss_pred HHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCC
Q 007499 453 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKG 532 (601)
Q Consensus 453 eda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g 532 (601)
++|++| |..||+| |+++.|+||||+|||||||||+++++|++|||+||++||++||+++++++++.+
T Consensus 137 ~~A~~~--ga~i~a~-----------G~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~ 203 (226)
T cd05311 137 EEAKEA--GADIVAT-----------GRSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEE 203 (226)
T ss_pred HHHHHc--CCcEEEe-----------CCCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCC
Confidence 999999 5448998 588999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcchhhHHHHHHHHHHH
Q 007499 533 ILYPSIDSIRDITAEVGAAVLRAA 556 (601)
Q Consensus 533 ~l~P~l~~ireVs~~VA~aVa~~A 556 (601)
.|||++++ |+||..||.+|+++|
T Consensus 204 ~~~P~~~~-~~~~~~va~~v~~~a 226 (226)
T cd05311 204 YIIPTPFD-PRVVPRVATAVAKAA 226 (226)
T ss_pred cccCCCCc-hhHHHHHHHHHHHhC
Confidence 99999999 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.72 E-value=1.1e-07 Score=81.50 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
+||.++++++..+.+..+.+++. .+++|+|+|.+|.+++..+.+.. -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~~-----------~~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADEG-----------GKKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcC-----------
Confidence 68999999999999999988888 99999999999999999887642 157888887
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
|+||++++.++.|+++.++.| ++.|+||.++
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 889999999999998855555 5799999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.35 E-value=0.0036 Score=69.06 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCe----E--EeeCCCChHHHHHHHHhc---cCCccc----------cCcchhHHHHHHHHHHHHHHhCC
Q 007499 254 EFMEAVHARWPKA----I--FEDFQMKWAFETLERYRK---RFCMFN----------DDIQGTAGVALAGLLGTVRAQGL 314 (601)
Q Consensus 254 efv~av~~~~P~~----l--~EDf~~~~Af~iL~ryr~---~~~~Fn----------DDiQGTaav~LAgll~Alr~~g~ 314 (601)
.|+..++.++|+. + -|+=.+-- .|+....++ .+|+|| |...||+--++-|+.. .++.
T Consensus 133 dl~~~~~~~~~~~~~~i~G~~EeTttGv-~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~ 208 (425)
T PRK05476 133 DLTLLVHTERPELLANIKGVTEETTTGV-HRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNV 208 (425)
T ss_pred HHHHHHHHHhhHhHhccEeeeecchHHH-HHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH---hccC
Confidence 4677777777754 3 67654432 223222222 389998 6678998777666654 3466
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCccc
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 394 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~ 394 (601)
.+.. .+++|+|+|..|.++|..+... |. +++++|.+- .+...+.... ..
T Consensus 209 ~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d~dp-----------~ra~~A~~~G-----~~ 257 (425)
T PRK05476 209 LIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTEVDP-----------ICALQAAMDG-----FR 257 (425)
T ss_pred CCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEcCCc-----------hhhHHHHhcC-----CE
Confidence 6666 9999999999999998888653 32 688888641 1111111100 01
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007499 395 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 445 (601)
Q Consensus 395 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt 445 (601)
..++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 258 v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK----~GailiNvG~~d 302 (425)
T PRK05476 258 VMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK----DGAILANIGHFD 302 (425)
T ss_pred ecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC----CCCEEEEcCCCC
Confidence 2358888876 89999988877889999999993 334665555444
No 16
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.03 E-value=0.0057 Score=67.30 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=105.6
Q ss_pred HHHHHHHHhCCCe----E--EeeCCCChHHHHHHHHhc---cCCccc----------cCcchhHHHHHHHHHHHHHHhCC
Q 007499 254 EFMEAVHARWPKA----I--FEDFQMKWAFETLERYRK---RFCMFN----------DDIQGTAGVALAGLLGTVRAQGL 314 (601)
Q Consensus 254 efv~av~~~~P~~----l--~EDf~~~~Af~iL~ryr~---~~~~Fn----------DDiQGTaav~LAgll~Alr~~g~ 314 (601)
.|+..++..+|+. + -|+=.+- ..|+..--++ .+|+|+ |.-.||+--++-+++. .++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~G~~EeTttG-v~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~ 198 (413)
T cd00401 123 DLTLLIHKKHPELLPGIRGISEETTTG-VHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDV 198 (413)
T ss_pred HHHHHHHhhhhhhhhccEEEeecchHH-HHHHHHHHHCCCCCCCEEEecchhhcccccccchhchhhHHHHHH---hcCC
Confidence 3555566656544 3 6765433 1222111112 478875 6678999988877765 5666
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCccc
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 394 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~ 394 (601)
.+.. .+++|+|+|..|.++|..+... |. +++++|.+ +.+..+|+... ..
T Consensus 199 ~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga-------~ViV~d~d-----------~~R~~~A~~~G-----~~ 247 (413)
T cd00401 199 MIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA-------RVIVTEVD-----------PICALQAAMEG-----YE 247 (413)
T ss_pred CCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECC-----------hhhHHHHHhcC-----CE
Confidence 6677 9999999999999998877653 32 57777763 22233343211 01
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007499 395 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 457 (601)
Q Consensus 395 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~ 457 (601)
..++.|+++. .|++|-+++.+++|+.+.++.|. ..-+|.-.+.+. .|+.+.+...
T Consensus 248 ~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk----~GgilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 248 VMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK----DGAIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred EccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC----CCcEEEEeCCCC--CccCHHHHHh
Confidence 2346788876 79999999888899999999883 455776667663 4888887654
No 17
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.90 E-value=0.013 Score=64.51 Aligned_cols=159 Identities=20% Similarity=0.269 Sum_probs=100.6
Q ss_pred HHHHHHHHhCCCe----E--EeeCCCChHHHHHHHHhc---cCCccc----------cCcchhHHHHHHHHHHHHHHhCC
Q 007499 254 EFMEAVHARWPKA----I--FEDFQMKWAFETLERYRK---RFCMFN----------DDIQGTAGVALAGLLGTVRAQGL 314 (601)
Q Consensus 254 efv~av~~~~P~~----l--~EDf~~~~Af~iL~ryr~---~~~~Fn----------DDiQGTaav~LAgll~Alr~~g~ 314 (601)
.|+..++..+|+. + -|+=.+-. .|+..-.++ .+|+|+ |.-.||+--++-+++ |.++.
T Consensus 116 dl~~~~~~~~~~~~~~~~G~~EeTttGv-~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~ 191 (406)
T TIGR00936 116 DLIFLLHTERPELLEKIIGGSEETTTGV-IRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNL 191 (406)
T ss_pred HHHHHHHHhhhhhhhccEEEeecchHHH-HHHHHHHHcCCCCCcEEEecchhhchhhhcccccchhHHHHHH---HhcCC
Confidence 4666666666654 3 67654332 222222222 378886 667899977776655 45666
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCccc
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 394 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~ 394 (601)
.+.. .+++|+|.|..|.++|..+... | -+++++|.+- .+...|+... ..
T Consensus 192 ~l~G---k~VvViG~G~IG~~vA~~ak~~-----G-------a~ViV~d~dp-----------~r~~~A~~~G-----~~ 240 (406)
T TIGR00936 192 LIAG---KTVVVAGYGWCGKGIAMRARGM-----G-------ARVIVTEVDP-----------IRALEAAMDG-----FR 240 (406)
T ss_pred CCCc---CEEEEECCCHHHHHHHHHHhhC-----c-------CEEEEEeCCh-----------hhHHHHHhcC-----CE
Confidence 6666 9999999999999999877653 3 2588888641 1111122110 01
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHH
Q 007499 395 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADA 455 (601)
Q Consensus 395 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda 455 (601)
..++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+.... |+.-++.
T Consensus 241 v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK----~GailiN~G~~~~--eId~~aL 293 (406)
T TIGR00936 241 VMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK----DGAIVANIGHFDV--EIDVKAL 293 (406)
T ss_pred eCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC----CCcEEEEECCCCc--eeCHHHH
Confidence 2357888876 79999888878888888888883 4557766666543 5555444
No 18
>PLN02494 adenosylhomocysteinase
Probab=96.83 E-value=0.012 Score=65.88 Aligned_cols=131 Identities=19% Similarity=0.269 Sum_probs=92.3
Q ss_pred cCCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhh
Q 007499 286 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 355 (601)
Q Consensus 286 ~~~~Fn----------DDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA 355 (601)
.+|++| |-..||+--++-|++ |.|+..+.. .+++|+|.|..|.++|..+... |.
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga----- 278 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA----- 278 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 478776 456899888888887 467776666 9999999999999999988543 42
Q ss_pred cCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 007499 356 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 435 (601)
Q Consensus 356 ~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~er 435 (601)
+|+++|.+.. +...|.... ....++.|+++. .|++|=+++..++++++.++.|. +.
T Consensus 279 --~VIV~e~dp~-----------r~~eA~~~G-----~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK----~G 334 (477)
T PLN02494 279 --RVIVTEIDPI-----------CALQALMEG-----YQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK----NN 334 (477)
T ss_pred --EEEEEeCCch-----------hhHHHHhcC-----CeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC----CC
Confidence 5887876421 111121110 011358888876 79999877777888999999993 56
Q ss_pred CeEEecCCCCCccCCCHHHHhcc
Q 007499 436 PAIFAMSNPTMNAECTAADAFKH 458 (601)
Q Consensus 436 PIIFaLSNPt~~aE~tpeda~~w 458 (601)
-++.-.+.+-. |+.-++..++
T Consensus 335 AiLiNvGr~~~--eID~~aL~~~ 355 (477)
T PLN02494 335 AIVCNIGHFDN--EIDMLGLETY 355 (477)
T ss_pred CEEEEcCCCCC--ccCHHHHhhc
Confidence 78887887654 7777666554
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.70 E-value=0.016 Score=58.41 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. .|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 4444556677788888877777 9999999999999999999864 32 568899999988887 565
Q ss_pred hhh-hccccccCCCCCcc--cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007499 377 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 452 (601)
Q Consensus 377 ~~k-~~fa~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tp 452 (601)
..+ ..+.+........+ +..+- +.+..++.||||=++. .+..|++..+.+ .-++|..-+| |+.. .+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~DVlipaA~-~~~i~~~~a~~l-----~a~~V~e~AN~p~t~---~a 135 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFPG-EAILGLDVDIFAPCAL-GNVIDLENAKKL-----KAKVVAEGANNPTTD---EA 135 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccCc-ccceeccccEEeeccc-cCccChhhHhhc-----CccEEEeCCCCCCCH---HH
Confidence 432 22222111000000 11111 2344558899997775 789999999988 3779998888 8863 45
Q ss_pred HHHhc
Q 007499 453 ADAFK 457 (601)
Q Consensus 453 eda~~ 457 (601)
++.++
T Consensus 136 ~~~L~ 140 (217)
T cd05211 136 LRILH 140 (217)
T ss_pred HHHHH
Confidence 66654
No 20
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.45 E-value=0.014 Score=64.03 Aligned_cols=142 Identities=23% Similarity=0.329 Sum_probs=89.0
Q ss_pred ChHHHHHHHHhccCCccccCc-chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCh
Q 007499 274 KWAFETLERYRKRFCMFNDDI-QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND 352 (601)
Q Consensus 274 ~~Af~iL~ryr~~~~~FnDDi-QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~ 352 (601)
..|+..=.+.|.+. .| .+.-++..+++--|.+..|. +.+ .+++|+|+|..|..++..+... |.
T Consensus 141 ~~a~~~~k~vr~~t-----~i~~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~-- 204 (417)
T TIGR01035 141 QKAFSVGKRVRTET-----DISAGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV-- 204 (417)
T ss_pred HHHHHHhhhhhhhc-----CCCCCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC--
Confidence 34444444444432 33 56666777777666666554 555 9999999999999988887653 43
Q ss_pred hhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhc
Q 007499 353 AFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES 431 (601)
Q Consensus 353 eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~ 431 (601)
.+|+++|+.. . ....+++.... .. ....++.+++.. .|++|-+++.+ ..+++++++.+..
T Consensus 205 ----~~V~v~~rs~----~------ra~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~- 265 (417)
T TIGR01035 205 ----GKILIANRTY----E------RAEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR- 265 (417)
T ss_pred ----CEEEEEeCCH----H------HHHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh-
Confidence 4799888841 1 11123322100 00 012357788876 89999987644 5799999998742
Q ss_pred CCCCC-eEEecCCCCCccCCCHH
Q 007499 432 DSVKP-AIFAMSNPTMNAECTAA 453 (601)
Q Consensus 432 ~~erP-IIFaLSNPt~~aE~tpe 453 (601)
...+| +|+=+++|-. +.|+
T Consensus 266 ~~~~~~~viDla~Prd---id~~ 285 (417)
T TIGR01035 266 ERTRPLFIIDIAVPRD---VDPA 285 (417)
T ss_pred cCCCCeEEEEeCCCCC---CChh
Confidence 11256 8999999984 5553
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.39 E-value=0.019 Score=60.38 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=86.4
Q ss_pred ChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 007499 274 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 353 (601)
Q Consensus 274 ~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 353 (601)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.. .+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 67888888888775444 33455666665555555554 556 9999999999999888877652 22
Q ss_pred hhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC
Q 007499 354 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS 433 (601)
Q Consensus 354 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~ 433 (601)
++|+++|+. .. ....+|+.-.... ....++.++++. .|++|-+++.+.. +++++.+.+...
T Consensus 203 ---~~V~v~~r~----~~------ra~~la~~~g~~~--~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~ 263 (311)
T cd05213 203 ---AEITIANRT----YE------RAEELAKELGGNA--VPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRS 263 (311)
T ss_pred ---CEEEEEeCC----HH------HHHHHHHHcCCeE--EeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCC
Confidence 579999874 11 1122333211000 011347788876 8999998876655 676666533121
Q ss_pred -CCCeEEecCCCCC
Q 007499 434 -VKPAIFAMSNPTM 446 (601)
Q Consensus 434 -erPIIFaLSNPt~ 446 (601)
..-+|+=||||-.
T Consensus 264 ~~~~~viDlavPrd 277 (311)
T cd05213 264 GKPRLIVDLAVPRD 277 (311)
T ss_pred CCCeEEEEeCCCCC
Confidence 2337778999875
No 22
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.14 E-value=0.03 Score=54.53 Aligned_cols=89 Identities=16% Similarity=0.320 Sum_probs=65.1
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccc
Q 007499 305 LLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 383 (601)
Q Consensus 305 ll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa 383 (601)
.+-.++.....|.+ .+++|+|+|. .|..+|..|... | .++++++++-
T Consensus 31 ~v~l~~~~~~~l~g---k~vlViG~G~~~G~~~a~~L~~~-----g-------~~V~v~~r~~----------------- 78 (168)
T cd01080 31 ILELLKRYGIDLAG---KKVVVVGRSNIVGKPLAALLLNR-----N-------ATVTVCHSKT----------------- 78 (168)
T ss_pred HHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHhhC-----C-------CEEEEEECCc-----------------
Confidence 33344444455566 9999999997 588888888752 3 2588888740
Q ss_pred cccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 384 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 384 ~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
..|.+.+++ .|++|.+++.+..|+++.++ +.-+|+=|+.|-.
T Consensus 79 ------------~~l~~~l~~--aDiVIsat~~~~ii~~~~~~-------~~~viIDla~prd 120 (168)
T cd01080 79 ------------KNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINRV 120 (168)
T ss_pred ------------hhHHHHHhh--CCEEEEcCCCCceecHHHcc-------CCeEEEEccCCCc
Confidence 137778887 89999999988899999654 2468888888874
No 23
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.018 Score=60.45 Aligned_cols=109 Identities=17% Similarity=0.289 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+.+-+|-.|++..++..+.+++. ++++++|+|- +|..+|.+|.. .| | ++.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~G---k~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~--------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAG---KHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR--------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC---------
Confidence 45778889999999999998888 9999999997 99999998864 23 2 68888762
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEec-CCCCC--cc-CC
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTM--NA-EC 450 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~--~a-E~ 450 (601)
..+|.+.+++ .|++|-+.+.++.|+.++++ +.-+|+=. .||.. .+ ++
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk-------~gavViDvg~n~~~~~~~GDv 243 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK-------QGAVVVDAGFHPRDGGGVGDI 243 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC-------CCCEEEEEEEeecCCCCcccc
Confidence 0237777775 89999999999999988765 34456544 36631 11 45
Q ss_pred CHHHHhc
Q 007499 451 TAADAFK 457 (601)
Q Consensus 451 tpeda~~ 457 (601)
.++++.+
T Consensus 244 d~~~~~~ 250 (283)
T PRK14192 244 ELQGIEE 250 (283)
T ss_pred cHHHhhc
Confidence 5555543
No 24
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.07 E-value=0.096 Score=54.89 Aligned_cols=174 Identities=14% Similarity=0.231 Sum_probs=107.1
Q ss_pred HHHHHHHHHhCCCeE-EeeCCCChHHHHHHHHhccCCcc------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEE
Q 007499 253 DEFMEAVHARWPKAI-FEDFQMKWAFETLERYRKRFCMF------NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIV 325 (601)
Q Consensus 253 defv~av~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~F------nDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv 325 (601)
+|+++.+. +.++ +-=+.+++-....++ ..+.++ |=-+..+-+++=.++.-+++.++..+.+ .+++
T Consensus 84 ~~~l~~~~---~~~~~~~G~~~~~l~~~a~~--~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~g---k~v~ 155 (287)
T TIGR02853 84 PELLESTK---GHCTIYVGISNPYLEQLAAD--AGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHG---SNVM 155 (287)
T ss_pred HHHHHhcC---CCCEEEEecCCHHHHHHHHH--CCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCC---CEEE
Confidence 45666665 4555 666666554433332 224444 3344666677766777788888777777 9999
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhccc
Q 007499 326 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKV 405 (601)
Q Consensus 326 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~v 405 (601)
|+|+|..|..+|+.+... |. +++++|++. . .+...+ .+ .... ....+|.+.+++
T Consensus 156 IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~--~~~~~~-~~--g~~~----~~~~~l~~~l~~- 209 (287)
T TIGR02853 156 VLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A--DLARIT-EM--GLIP----FPLNKLEEKVAE- 209 (287)
T ss_pred EEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H--HHHHHH-HC--CCee----ecHHHHHHHhcc-
Confidence 999999999999988753 42 588888741 0 111110 00 0000 012357788876
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHHhcccCCcEEEEcCCC
Q 007499 406 KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFKHAGENIVFASGSP 470 (601)
Q Consensus 406 kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpeda~~wt~Grai~AsGSP 470 (601)
.|++|=+. ..+.++++.++.|. +.-+|+=+|. |- ++..+.| +--.-+++.+-|-|
T Consensus 210 -aDiVint~-P~~ii~~~~l~~~k----~~aliIDlas~Pg---~tdf~~A-k~~G~~a~~~~glP 265 (287)
T TIGR02853 210 -IDIVINTI-PALVLTADVLSKLP----KHAVIIDLASKPG---GTDFEYA-KKRGIKALLAPGLP 265 (287)
T ss_pred -CCEEEECC-ChHHhCHHHHhcCC----CCeEEEEeCcCCC---CCCHHHH-HHCCCEEEEeCCCC
Confidence 79999654 34678999999883 4567776654 53 5666444 33345677776633
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.94 E-value=0.11 Score=58.28 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=81.8
Q ss_pred CCccccCcchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007499 287 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 359 (601)
Q Consensus 287 ~~~FnDDiQGTaav~-------LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 359 (601)
+|++|-+---|-++. ++.+-+.+|.++..+.. .+++|+|.|..|.++|..+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 788886554443332 44445556777877777 9999999999999999988653 32 57
Q ss_pred EEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 360 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 360 ~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
+++|++-. + ...|.... ....++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.
T Consensus 281 iV~e~dp~----~-------a~~A~~~G-----~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK----pGAiLI 338 (476)
T PTZ00075 281 VVTEIDPI----C-------ALQAAMEG-----YQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK----NNAIVG 338 (476)
T ss_pred EEEeCCch----h-------HHHHHhcC-----ceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC----CCcEEE
Confidence 77776411 0 00011100 012468888876 89999888888999999999993 455766
Q ss_pred ecCCCC
Q 007499 440 AMSNPT 445 (601)
Q Consensus 440 aLSNPt 445 (601)
-.+...
T Consensus 339 NvGr~d 344 (476)
T PTZ00075 339 NIGHFD 344 (476)
T ss_pred EcCCCc
Confidence 666653
No 26
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.90 E-value=0.03 Score=61.46 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
+..+|+.+|+--|.+..+ ++.. .+++|+|+|..|..++..+.. .|. ++|+++|+.. .|
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r--- 218 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER--- 218 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---
Confidence 355666666544444433 4555 999999999999999887754 343 5799888841 11
Q ss_pred ChhhhccccccC-CCCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC-CCCCeEEecCCCCC
Q 007499 376 DPAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD-SVKPAIFAMSNPTM 446 (601)
Q Consensus 376 ~~~k~~fa~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~-~erPIIFaLSNPt~ 446 (601)
...+++... .. ....++.+++.. .|++|.+++.+ ..+++++++.+...- ....+|+=||+|-.
T Consensus 219 ---a~~la~~~g~~~---~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 219 ---AEELAEEFGGEA---IPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred ---HHHHHHHcCCcE---eeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 112332210 00 011346677765 89999987755 578999999874211 12358889999984
No 27
>PLN02477 glutamate dehydrogenase
Probab=95.86 E-value=0.24 Score=54.72 Aligned_cols=188 Identities=21% Similarity=0.253 Sum_probs=123.5
Q ss_pred CChhhhhHhHHHHHHHHHHhCCCe--E-EeeCCCChH--HHHHHHHhcc----------CCcc----ccCcchhHHHHHH
Q 007499 243 LEGEEYLSIVDEFMEAVHARWPKA--I-FEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 303 (601)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~P~~--l-~EDf~~~~A--f~iL~ryr~~----------~~~F----nDDiQGTaav~LA 303 (601)
++..|-..+...|++++....... + =+|.+..-. --+.++|+.. -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456788889999999998876333 4 778766422 1245677651 1211 2233457777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEecCccccCCCCCCChhhh-c
Q 007499 304 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 381 (601)
Q Consensus 304 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~l~~~k~-~ 381 (601)
++-.+++..|.+|+. .||+|.|.|..|-+.|++|.+. |. +|+ +.|++|-|++.. .|+..+. .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888888888887777 9999999999999999988653 42 566 899999998865 3443221 1
Q ss_pred cccccC---CCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHHhc
Q 007499 382 FAKDPG---DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 457 (601)
Q Consensus 382 fa~~~~---~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpeda~~ 457 (601)
+.+... .+.+ ....+-.+++. .+.||||=+. .++..|++.+..+ .-.||.--+| |+. .| +++.++
T Consensus 256 ~k~~~g~l~~~~~-a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~t-~e--a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPG-GDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPTD-PE--ADEILR 324 (410)
T ss_pred HHHhcCchhcccc-ceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCCC-HH--HHHHHH
Confidence 111100 0100 01123334443 3799999766 5899999999987 4789999999 763 23 455554
No 28
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.82 E-value=0.18 Score=49.21 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 295 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
.||+--++-|++. .|+..+.- .+++++|-|--|-|+|+.+..... ++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHHh---cCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 5777777777774 57777666 999999999999999999877533 67777763
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 454 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tped 454 (601)
|.+.-=|.- .+ -+..++.|+++. +|++|.+++..++.+.|.++.|. +.-|+.-..- ...|+.-+.
T Consensus 56 --Pi~alqA~~----dG-f~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk----dgail~n~Gh--~d~Eid~~~ 120 (162)
T PF00670_consen 56 --PIRALQAAM----DG-FEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK----DGAILANAGH--FDVEIDVDA 120 (162)
T ss_dssp --HHHHHHHHH----TT--EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSS--STTSBTHHH
T ss_pred --hHHHHHhhh----cC-cEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc----CCeEEeccCc--CceeEeecc
Confidence 222111111 00 023469999987 89999999988999999999993 4556554442 234777766
Q ss_pred Hhc
Q 007499 455 AFK 457 (601)
Q Consensus 455 a~~ 457 (601)
.-+
T Consensus 121 L~~ 123 (162)
T PF00670_consen 121 LEA 123 (162)
T ss_dssp HHT
T ss_pred ccc
Confidence 544
No 29
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.71 E-value=0.0097 Score=55.18 Aligned_cols=106 Identities=19% Similarity=0.336 Sum_probs=64.7
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccC
Q 007499 316 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREG 395 (601)
Q Consensus 316 l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~ 395 (601)
+.+|.+.|++|+|||.+|-+++..|... |. ++|++++|. .+| .......| ....+. ....
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~--~~~~~~-~~~~ 66 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEF--GGVNIE-AIPL 66 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHH--TGCSEE-EEEG
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHc--Cccccc-eeeH
Confidence 3345559999999999988888777653 43 589999984 111 12222222 100000 0122
Q ss_pred CCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 396 ASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 396 ~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
.++.+.+.. .|++|-+++.+ -.++++.++.... ...+||=||+|-.
T Consensus 67 ~~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~---~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 67 EDLEEALQE--ADIVINATPSGMPIITEEMLKKASK---KLRLVIDLAVPRD 113 (135)
T ss_dssp GGHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH---HCSEEEES-SS-S
T ss_pred HHHHHHHhh--CCeEEEecCCCCcccCHHHHHHHHh---hhhceeccccCCC
Confidence 446677776 79999988765 3789988886421 1249999999976
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.30 E-value=0.12 Score=54.45 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhcc
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 382 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~f 382 (601)
+++..+++..+..+.. .|++|+|+|.+|..++..+... | -+++++|++- .+...
T Consensus 137 gav~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~-----------~~~~~ 190 (296)
T PRK08306 137 GAIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS-----------AHLAR 190 (296)
T ss_pred HHHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH-----------HHHHH
Confidence 3555677777777767 9999999999998888877643 4 2699998861 11111
Q ss_pred ccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 383 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 383 a~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
++...- . .....+|.+.++. .|++|-++ ....++++.++.|. +..+|+=++.
T Consensus 191 ~~~~G~-~-~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~----~g~vIIDla~ 242 (296)
T PRK08306 191 ITEMGL-S-PFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP----PEALIIDLAS 242 (296)
T ss_pred HHHcCC-e-eecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC----CCcEEEEEcc
Confidence 211000 0 0012357788876 89999865 45778999999984 4667775554
No 31
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.28 E-value=0.049 Score=57.46 Aligned_cols=97 Identities=19% Similarity=0.341 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 295 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
.+-.-+|-+|++.-++..+.+|+. .+++++|+|. .|..+|.+|... | ..+++++++.
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t------- 192 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADIDLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS------- 192 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc-------
Confidence 345677889999999999998888 9999999988 999999998652 3 3688887641
Q ss_pred CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007499 374 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 374 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 444 (601)
.+|.+.+++ .|++|.+.+.++.|++++++ +.-+|+=++.|
T Consensus 193 ----------------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk-------~gavVIDvGi~ 232 (286)
T PRK14175 193 ----------------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK-------EGAVIIDVGNT 232 (286)
T ss_pred ----------------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEcCCC
Confidence 237788888 89999999999999998764 34566666554
No 32
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.02 E-value=0.098 Score=56.44 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
|+++...++--|.+..|..+++ .+++|.|| |+.|--+|++|... .|. +++++++++ . ..+
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~--~rl 194 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----Q--ERL 194 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----H--HHH
Confidence 6778888888888888887777 99999999 89999998888642 222 478888874 1 122
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCC--CCHHHHHHhhhcCCCCC-eEEecCCCCC
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--FNEEVLKAMRESDSVKP-AIFAMSNPTM 446 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--Ft~evv~~Ma~~~~erP-IIFaLSNPt~ 446 (601)
...+.++... +..+|.+++.. +|++|-+++.+.. .+++.+ ++| +|+=++.|-.
T Consensus 195 ~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l--------~~~~~viDiAvPRD 250 (340)
T PRK14982 195 QELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVEIDPETL--------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh--------CCCeEEEEecCCCC
Confidence 2222233211 12358888876 8999987776443 566544 244 5566999976
No 33
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.92 E-value=0.21 Score=50.80 Aligned_cols=129 Identities=20% Similarity=0.313 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 295 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
.-||-=+..++-.+++..+..+.. .||+|.|-|..|-++|++|.+. |. +=+.+.|++|-+++.. .
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~-G 72 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD-G 72 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-C
Confidence 346666677778888888876766 9999999999999999988763 43 2355999999998765 3
Q ss_pred CChhhh-ccccccC---CCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 007499 375 LDPAAA-PFAKDPG---DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 446 (601)
Q Consensus 375 l~~~k~-~fa~~~~---~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~ 446 (601)
|+.... .+.+... .+.. ....+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+.
T Consensus 73 ld~~~l~~~~~~~g~l~~~~~-~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~t 141 (227)
T cd01076 73 LDVPALLAYKKEHGSVLGFPG-AERITNEE-LLELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPTT 141 (227)
T ss_pred CCHHHHHHHHHhcCCcccCCC-ceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCCC
Confidence 432221 1111100 0100 00112233 3345889999877 5899999999998 3789999999 553
No 34
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.82 E-value=0.24 Score=51.56 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~ 374 (601)
.||-=+.-++-.+++..+.+|+. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-G 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-C
Confidence 35655677777888888888888 9999999999999999998763 42 455 999999998865 3
Q ss_pred CChhhhc--ccc---cc---CCCC-Cc--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 375 LDPAAAP--FAK---DP---GDFM-GL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 375 l~~~k~~--fa~---~~---~~~~-~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
|+..+.. +.+ .. .... .. ....+-.|.. ..+.||||=+. ..+..|++-+..+. .+.-.||.--+|
T Consensus 80 ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i~--~~~ak~I~EgAN 155 (254)
T cd05313 80 FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLLV--KNGCKYVAEGAN 155 (254)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHHH--HcCCEEEEeCCC
Confidence 4422110 000 00 0000 00 0111222322 45789999776 47999999999983 356789999999
Q ss_pred -CCCccCCCHHHHhc
Q 007499 444 -PTMNAECTAADAFK 457 (601)
Q Consensus 444 -Pt~~aE~tpeda~~ 457 (601)
|+.. .+++.+.
T Consensus 156 ~p~t~---~a~~~L~ 167 (254)
T cd05313 156 MPCTA---EAIEVFR 167 (254)
T ss_pred CCCCH---HHHHHHH
Confidence 8752 3445444
No 35
>PLN00203 glutamyl-tRNA reductase
Probab=94.76 E-value=0.12 Score=58.77 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=83.5
Q ss_pred ChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCh
Q 007499 274 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND 352 (601)
Q Consensus 274 ~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~-~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~ 352 (601)
..||+.=.|-|.+.-. -.|--+|.-+++=-|.+..|. +|.+ .+|+|+|||..|..++..+.. .|.
T Consensus 225 ~~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~-- 290 (519)
T PLN00203 225 KHAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC-- 290 (519)
T ss_pred HHHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC--
Confidence 3455555555554211 123334444455555555553 4666 999999999999888776653 343
Q ss_pred hhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhc
Q 007499 353 AFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES 431 (601)
Q Consensus 353 eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~ 431 (601)
++|+++++.. .+ ....+..|-.....+ ....++.+++.. .|++|.+++.+ ..|++++++.|-+.
T Consensus 291 ----~~V~V~nRs~----er--a~~La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~ 355 (519)
T PLN00203 291 ----TKMVVVNRSE----ER--VAALREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPA 355 (519)
T ss_pred ----CeEEEEeCCH----HH--HHHHHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhc
Confidence 5799998841 11 111111220000000 012457788876 89999876544 58999999997320
Q ss_pred --CCCCC-eEEecCCCCC
Q 007499 432 --DSVKP-AIFAMSNPTM 446 (601)
Q Consensus 432 --~~erP-IIFaLSNPt~ 446 (601)
...+| +|+=||.|-.
T Consensus 356 ~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 356 SDTVGGKRLFVDISVPRN 373 (519)
T ss_pred ccccCCCeEEEEeCCCCC
Confidence 11244 5667999975
No 36
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.45 E-value=0.54 Score=48.68 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=97.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc-cCCCCCCChhhhccccccC----C-----CCC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI-TKERKNLDPAAAPFAKDPG----D-----FMG 391 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi-~~~r~~l~~~k~~fa~~~~----~-----~~~ 391 (601)
.+|.|+|+|..|.+||..+..+ | -+++++|.+--- .+.+..+......+..... + ...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999887643 4 268999874110 0000001000111110000 0 000
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCC
Q 007499 392 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPF 471 (601)
Q Consensus 392 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf 471 (601)
.....++.+++++ .|++|=+-...-.+..++++...+ ......|+ .||.+++ .+.++.+...-..=|....||
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~vg~Hf~ 144 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIF-ATNSSTL---LPSQFAEATGRPEKFLALHFA 144 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEE-EECcccC---CHHHHHhhcCCcccEEEEcCC
Confidence 1123578899887 788875432122356677777643 44444455 3565553 455554433211113445788
Q ss_pred CceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHHHHHhccCCCCCCCCCc-cc-cCCCCcchhhHHHH
Q 007499 472 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI-LY-PSIDSIRDITAEVG 549 (601)
Q Consensus 472 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~~~l~~g~-l~-P~l~~ireVs~~VA 549 (601)
.|+.. .+. .-| +....-+++. .+.+.++...+. ... ++ |..- --|..++-
T Consensus 145 ~p~~~--~~l--------vev----------v~~~~t~~~~-~~~~~~~~~~~G-----k~pv~v~~d~p--gfi~nRi~ 196 (287)
T PRK08293 145 NEIWK--NNT--------AEI----------MGHPGTDPEV-FDTVVAFAKAIG-----MVPIVLKKEQP--GYILNSLL 196 (287)
T ss_pred CCCCc--CCe--------EEE----------eCCCCCCHHH-HHHHHHHHHHcC-----CeEEEecCCCC--CHhHHHHH
Confidence 88754 221 112 2223335554 445555555443 112 22 2322 24666666
Q ss_pred HHHHHHH---HHcCccC
Q 007499 550 AAVLRAA---VEEDLAE 563 (601)
Q Consensus 550 ~aVa~~A---~~~G~A~ 563 (601)
.++...| +++|+|+
T Consensus 197 ~~~~~ea~~l~~~g~a~ 213 (287)
T PRK08293 197 VPFLSAALALWAKGVAD 213 (287)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 6666655 4589875
No 37
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.36 E-value=0.1 Score=56.33 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=71.0
Q ss_pred ChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 007499 274 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 353 (601)
Q Consensus 274 ~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 353 (601)
..|++.=.|.|.+.- =|.++|.++.+ |.....+ +.+|.+.+++++|||..|--+|+.|.+ .|.
T Consensus 136 ~~A~~~aKrVRteT~------I~~~~vSv~s~--av~~~~~-~~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG------APYAEVTIESV--VQQELRR-RQKSKKASLLFIGYSEINRKVAYYLQR-----QGY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcC------CCCCCcCHHHH--HHHHHHH-hCCccCCEEEEEcccHHHHHHHHHHHH-----cCC---
Confidence 466666677776521 14444544443 2222211 234555999999999988766666654 354
Q ss_pred hhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhh
Q 007499 354 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMR 429 (601)
Q Consensus 354 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma 429 (601)
++|+++.+.-. ..+|..-. ....+.. .+.||+|-+| ++.-..+.+.++..
T Consensus 199 ---~~i~v~nRt~~-----------~~~~~~~~---------~~~~~~~--~~~DvVIs~t~~Tas~~p~i~~~~~~~~- 252 (338)
T PRK00676 199 ---SRITFCSRQQL-----------TLPYRTVV---------REELSFQ--DPYDVIFFGSSESAYAFPHLSWESLADI- 252 (338)
T ss_pred ---CEEEEEcCCcc-----------ccchhhhh---------hhhhhcc--cCCCEEEEcCCcCCCCCceeeHHHHhhc-
Confidence 57999888631 12232110 0000111 3579999753 22345666665542
Q ss_pred hcCCCCCeEEecCCCCC
Q 007499 430 ESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 430 ~~~~erPIIFaLSNPt~ 446 (601)
-+| ++|=||+|-.
T Consensus 253 ---~~r-~~iDLAvPRd 265 (338)
T PRK00676 253 ---PDR-IVFDFNVPRT 265 (338)
T ss_pred ---cCc-EEEEecCCCC
Confidence 224 9999999987
No 38
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.28 E-value=0.45 Score=53.32 Aligned_cols=187 Identities=19% Similarity=0.210 Sum_probs=122.9
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCe-E-EeeCCCChHHH---HHHHHhcc---C-Cccc----------cCcchhHHHHH
Q 007499 243 LEGEEYLSIVDEFMEAVHARW-PKA-I-FEDFQMKWAFE---TLERYRKR---F-CMFN----------DDIQGTAGVAL 302 (601)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~-l-~EDf~~~~Af~---iL~ryr~~---~-~~Fn----------DDiQGTaav~L 302 (601)
.+..|-..|...||..+.+.. |+. + =.|++. ++.. +.+.|+.- . .|+- +--..||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 556677889999999988766 544 4 778774 3332 45555532 1 1111 11223777777
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEecCccccCCCCCCChhhh-
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA- 380 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~l~~~k~- 380 (601)
.++-.+++..+.+|+. .||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~-Gld~~~l~ 285 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN-GFTKEKLA 285 (454)
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC-CCCHHHHH
Confidence 8888889999998888 9999999999999999988764 42 566 999999999865 4554332
Q ss_pred --------------ccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 007499 381 --------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 445 (601)
Q Consensus 381 --------------~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt 445 (601)
.|+.... + ....+-.+ +-.++.||||=+.+ .+..|++-++.+.+ +.-.+|.=-+| |+
T Consensus 286 ~l~~~k~~~~g~i~~~~~~~~---~-a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~--~~ak~V~EgAN~p~ 357 (454)
T PTZ00079 286 YLMDLKNVKRGRLKEYAKHSS---T-AKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK--NGCKLVAEGANMPT 357 (454)
T ss_pred HHHHHHhhcCCcHHhhhhccC---C-cEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH--cCCeEEEecCCCCC
Confidence 1211000 0 00001111 22368999998776 69999999998842 56678998888 77
Q ss_pred CccCCCHHHHhc
Q 007499 446 MNAECTAADAFK 457 (601)
Q Consensus 446 ~~aE~tpeda~~ 457 (601)
.. .+.+.++
T Consensus 358 t~---eA~~~L~ 366 (454)
T PTZ00079 358 TI---EATHLFK 366 (454)
T ss_pred CH---HHHHHHH
Confidence 52 3445544
No 39
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.20 E-value=0.12 Score=57.03 Aligned_cols=259 Identities=22% Similarity=0.299 Sum_probs=141.0
Q ss_pred hhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhC-CCeEEeeCCCChHHHH
Q 007499 201 LDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIFEDFQMKWAFET 279 (601)
Q Consensus 201 l~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~l~EDf~~~~Af~i 279 (601)
-+||..++|+| -+=+|- +-=+| ..=+.|-.|.+..+ +..| ++=-..|+..
T Consensus 94 ~HLfrVAsGLD-------SmVlGE--------~QILG------------QVK~Ay~~a~~~g~~g~~L--~~lFqkAi~~ 144 (414)
T COG0373 94 RHLFRVASGLD-------SLVLGE--------TQILG------------QVKDAYAKAQENGTLGKVL--NRLFQKAISV 144 (414)
T ss_pred HHHHHHhccch-------hhhcCc--------HHHHH------------HHHHHHHHHHHcCCchHHH--HHHHHHHHHH
Confidence 37899999999 444562 11111 22344444444444 2222 2223578888
Q ss_pred HHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007499 280 LERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 359 (601)
Q Consensus 280 L~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 359 (601)
=.|+|.+--. -.|--+|.-|++=-|-++.|. |++ .+++|+|||..|..+|..|... |. ++|
T Consensus 145 gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~---~~vlvIGAGem~~lva~~L~~~-----g~------~~i 205 (414)
T COG0373 145 GKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKD---KKVLVIGAGEMGELVAKHLAEK-----GV------KKI 205 (414)
T ss_pred HHHhhcccCC----CCCccchHHHHHHHHHHHhcc-ccc---CeEEEEcccHHHHHHHHHHHhC-----CC------CEE
Confidence 8888876210 123334444444445555544 445 9999999999999998888764 43 589
Q ss_pred EEEecCccccCCCCCCChhhhccccccC-CCCCcccCCCHHHHhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCC-
Q 007499 360 FLLDKDGLITKERKNLDPAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKP- 436 (601)
Q Consensus 360 ~lvD~~GLi~~~r~~l~~~k~~fa~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erP- 436 (601)
+++.+. ..| . +.+|+.-. +. .....|.+.+.. .||+|-.++. .-+++.+.++.-.+ ..+.
T Consensus 206 ~IaNRT----~er-----A-~~La~~~~~~~---~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~--~r~~~ 268 (414)
T COG0373 206 TIANRT----LER-----A-EELAKKLGAEA---VALEELLEALAE--ADVVISSTSAPHPIITREMVERALK--IRKRL 268 (414)
T ss_pred EEEcCC----HHH-----H-HHHHHHhCCee---ecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh--cccCe
Confidence 988872 222 1 12333211 00 012346677766 7998866554 46788888876532 2333
Q ss_pred eEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHH
Q 007499 437 AIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQA 516 (601)
Q Consensus 437 IIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aA 516 (601)
+||=|+||-. +++. .+.-+|+++|-==-|-.+.-.-..-..+.. ++
T Consensus 269 livDiavPRd---------ie~~------------------------v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ 314 (414)
T COG0373 269 LIVDIAVPRD---------VEPE------------------------VGELPNVFLYTIDDLEEIVEENLEARKEEA-AK 314 (414)
T ss_pred EEEEecCCCC---------CCcc------------------------ccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HH
Confidence 9999999986 2221 111234444432222222211111111111 12
Q ss_pred HHH-----HhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcC
Q 007499 517 AEC-----LASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEED 560 (601)
Q Consensus 517 A~a-----LA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~G 560 (601)
|++ ++++.. .+..-.+-|.+.++|+-+..|...-.+.|.+.-
T Consensus 315 ae~iIeee~~~~~~--~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 315 AEAIIEEELAEFME--WLKKLEVVPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 222211 234556889999999888888888777777543
No 40
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.14 Score=53.99 Aligned_cols=83 Identities=12% Similarity=0.198 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 298 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 298 aav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.-+|-+|++.=++..+.+++. .+++++|.| ..|.-+|.+|... | ..+.+++++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvVvGrs~~VG~Pla~lL~~~-----g-------AtVtv~hs~----------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKG---KDVVIIGASNIVGKPLAMLMLNA-----G-------ASVSVCHIL----------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CEEEEEeCC-----------
Confidence 457888899999999998888 999999999 9999999998652 3 246666542
Q ss_pred hhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 377 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 377 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|.+.+.|+.+++++|+
T Consensus 191 ------------------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ------------------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ------------------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1247788888 89999999999999999886
No 41
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.04 E-value=0.056 Score=59.60 Aligned_cols=134 Identities=16% Similarity=0.263 Sum_probs=76.2
Q ss_pred ChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 007499 274 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 353 (601)
Q Consensus 274 ~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 353 (601)
..||+.=.|-|.+.-. -.|--+|+-+|+=-|-+. +.+|.+.+++|+|||.+|-.+|..|.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I----~~~~vSv~~~Av~la~~~----~~~l~~kkvlviGaG~~a~~va~~L~~-----~g~--- 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI----GHCPVSVAFSAITLAKRQ----LDNISSKNVLIIGAGQTGELLFRHVTA-----LAP--- 205 (414)
T ss_pred HHHHHHHHHHHhccCC----CCCCcCHHHHHHHHHHHH----hcCccCCEEEEEcCcHHHHHHHHHHHH-----cCC---
Confidence 4566666677765321 012223333333333333 333445999999999999888777754 344
Q ss_pred hhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC
Q 007499 354 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD 432 (601)
Q Consensus 354 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~ 432 (601)
++|+++.+. ..+ -+.++..-.... .....+|.+++.. .|++|-+++.| -++|.+.++
T Consensus 206 ---~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------ 263 (414)
T PRK13940 206 ---KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------ 263 (414)
T ss_pred ---CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------
Confidence 579988884 111 122222110000 0012356777776 89999988766 457765432
Q ss_pred CCCCe-EEecCCCCC
Q 007499 433 SVKPA-IFAMSNPTM 446 (601)
Q Consensus 433 ~erPI-IFaLSNPt~ 446 (601)
.+|+ |+=|+.|-.
T Consensus 264 -~~~~~~iDLavPRd 277 (414)
T PRK13940 264 -DKPRVFIDISIPQA 277 (414)
T ss_pred -CCCeEEEEeCCCCC
Confidence 3665 467999976
No 42
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.97 E-value=0.26 Score=48.95 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 297 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 297 Taav~LAgll~Alr~~--g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.|.+. |. +++++|++. +.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~~ 63 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------EA 63 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------HH
Confidence 5555556666777775 777777 9999999999999999988764 42 688888751 11
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAA 453 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe 453 (601)
+...+..|. . ...+..+... .+.|+++=++. .+..|++.++.| .-++|..-+| |+. +..++
T Consensus 64 ~~~~~~~~g---~------~~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l-----~~~~v~~~AN~~~~--~~~~~ 125 (200)
T cd01075 64 VARAAELFG---A------TVVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL-----KAKAIAGAANNQLA--DPRHG 125 (200)
T ss_pred HHHHHHHcC---C------EEEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc-----CCCEEEECCcCccC--CHhHH
Confidence 222222221 0 0112233333 36899996554 789999999999 3578988888 665 23344
Q ss_pred HHhc
Q 007499 454 DAFK 457 (601)
Q Consensus 454 da~~ 457 (601)
+.++
T Consensus 126 ~~L~ 129 (200)
T cd01075 126 QMLH 129 (200)
T ss_pred HHHH
Confidence 5544
No 43
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.86 E-value=0.075 Score=52.91 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=64.8
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCccc
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 394 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~ 394 (601)
+|++ .||+|+|+|..|.+||..|+.+ |+ ++|.++|.+=+ .. .+|+.+ ..+..+. +...
T Consensus 18 ~L~~---~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~--sNL~Rq-~~~~~~i----G~~K 75 (200)
T TIGR02354 18 KLEQ---ATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP--SNLNRQ-QYKASQV----GEPK 75 (200)
T ss_pred HHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc--cccccc-cCChhhC----CCHH
Confidence 3555 9999999999999999999765 44 58999999732 22 245542 2121111 1011
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCCccCC
Q 007499 395 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTMNAEC 450 (601)
Q Consensus 395 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF-aLSNPt~~aE~ 450 (601)
...+.+.++...|++-|- +...-++++-+...-+ +--+|+ +.-||..+.+.
T Consensus 76 a~~~~~~l~~inp~~~i~--~~~~~i~~~~~~~~~~---~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 76 TEALKENISEINPYTEIE--AYDEKITEENIDKFFK---DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHHHHHHCCCCEEE--EeeeeCCHhHHHHHhc---CCCEEEECCCCHHHHHHH
Confidence 133667777777876443 2334567666665422 334555 55666665443
No 44
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.75 E-value=2.3 Score=47.63 Aligned_cols=192 Identities=18% Similarity=0.165 Sum_probs=123.0
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCe-E-EeeCCCChH--HHHHHHHhccC----------Ccc----ccCcchhHHHHHH
Q 007499 243 LEGEEYLSIVDEFMEAVHARW-PKA-I-FEDFQMKWA--FETLERYRKRF----------CMF----NDDIQGTAGVALA 303 (601)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~-l-~EDf~~~~A--f~iL~ryr~~~----------~~F----nDDiQGTaav~LA 303 (601)
.+..|-..|...|+.++.+.+ |.. + =+|++..-. --+.+.|+.-. |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 566688889999999999877 432 3 777774221 22567776431 211 1233457777778
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ecCccccCCCCCCChh----
Q 007499 304 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPA---- 378 (601)
Q Consensus 304 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~l~~~---- 378 (601)
++..+++..+..|+. .||+|.|-|..|...|++|.. .|. +|+-+ |++|-|+... .|+..
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888888888888888 999999999999999999864 342 56655 9999998865 34332
Q ss_pred -hhccccccCCCCCc--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHH
Q 007499 379 -AAPFAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAAD 454 (601)
Q Consensus 379 -k~~fa~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tped 454 (601)
+...-..-..+... ....+-.+ +..++.||||=+.. .+..|++-...+. .+.-.||.=-+| |+. .| +++
T Consensus 282 ~k~~~~~~l~~~~~~~~~~~i~~~~-i~~~d~DVliPaAl-~n~It~~~a~~i~--~~~akiIvEgAN~p~t-~~--A~~ 354 (445)
T PRK09414 282 IKEVRRGRISEYAEEFGAEYLEGGS-PWSVPCDIALPCAT-QNELDEEDAKTLI--ANGVKAVAEGANMPST-PE--AIE 354 (445)
T ss_pred HHHhcCCchhhhhhhcCCeecCCcc-ccccCCcEEEecCC-cCcCCHHHHHHHH--HcCCeEEEcCCCCCCC-HH--HHH
Confidence 21100000000000 00112222 33567899997764 8999999999883 245679999998 773 22 445
Q ss_pred Hhc
Q 007499 455 AFK 457 (601)
Q Consensus 455 a~~ 457 (601)
++.
T Consensus 355 ~L~ 357 (445)
T PRK09414 355 VFL 357 (445)
T ss_pred HHH
Confidence 554
No 45
>PLN00106 malate dehydrogenase
Probab=93.65 E-value=0.26 Score=52.70 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhh
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 380 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~ 380 (601)
|.-|.|+|..|..- . .||+|+|| |..|.-+|..|.. .|+- ..+.|+|.+- .++. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~-~---~KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAP-G---FKVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCC-C---CEEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 45577888888743 3 69999999 9999999887753 2332 4799999865 1111 13433221
Q ss_pred ccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 381 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 381 ~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+ .+- ....+..++.+++++ .|++|=+.+.+.. ..+++++.+. +++.+.||+.-|||..
T Consensus 68 ~-~~i----~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~-~~~p~aivivvSNPvD 139 (323)
T PLN00106 68 P-AQV----RGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVA-KHCPNALVNIISNPVN 139 (323)
T ss_pred C-ceE----EEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEeCCCcc
Confidence 1 110 000123568889988 7888766654321 2356677775 4889999999999995
No 46
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.63 E-value=0.58 Score=44.42 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCCh
Q 007499 299 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 377 (601)
Q Consensus 299 av~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~ 377 (601)
-+|..|++.-++..|.+++. ++|+++|.+. .|.-+|.+| . ++|. .+..+|++
T Consensus 9 p~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~vG~pla~lL----~-~~ga-------tV~~~~~~------------ 61 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDG---KKVLVVGRSGIVGAPLQCLL----Q-RDGA-------TVYSCDWK------------ 61 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHH----H-HCCC-------EEEEeCCC------------
Confidence 45788999999999998888 9999999864 344444444 3 3443 56777763
Q ss_pred hhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 378 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 378 ~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ .|++|-+.+.++.|+.++||.
T Consensus 62 -----------------t~~l~~~v~~--ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 62 -----------------TIQLQSKVHD--ADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred -----------------CcCHHHHHhh--CCEEEEecCCCCccCHHHcCC
Confidence 1248888988 899999999999999999884
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.41 E-value=0.25 Score=53.58 Aligned_cols=229 Identities=15% Similarity=0.219 Sum_probs=124.8
Q ss_pred hhhHHHHHhcCCCCCeeEEEEecCccccccCCCCC--ccccccchhhhHHHhhcCCCCCceecEEeeccCC----chhcc
Q 007499 157 KGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN----NQKLL 230 (601)
Q Consensus 157 ~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~--~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTn----N~~Ll 230 (601)
|+++.++.++ ..+|+|=++.+.-.|+-|--- .|..|......+|. | | |.+-|..= =+.+.
T Consensus 20 P~~v~~l~~~----g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~-~---d------ii~~Vk~p~~~~~~~~~ 85 (370)
T TIGR00518 20 PAGVAELTSR----GHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD-A---E------LVLKVKEPLPEEYGYLR 85 (370)
T ss_pred HHHHHHHHhC----CCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc-C---C------EEEEeCCCCHHHHhhcC
Confidence 4556665553 578888888777777777653 35555544445552 1 1 22222111 11334
Q ss_pred cCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE-EeeCCCChHHHHHHHHhccCCcc--ccCcchhHHHHHHHHHH
Q 007499 231 EDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-FEDFQMKWAFETLERYRKRFCMF--NDDIQGTAGVALAGLLG 307 (601)
Q Consensus 231 ~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~F--nDDiQGTaav~LAgll~ 307 (601)
.+..++++=|+=- . .+.+++..+.-...+ +|-+.. -+.++++| +--+-|--+|.+|+...
T Consensus 86 ~g~~l~~~~~~a~-----~---~~~~~~l~~~~~t~i~~e~i~~---------~~~~~~~l~~~~~iaG~~av~~aa~~~ 148 (370)
T TIGR00518 86 HGQILFTYLHLAA-----E---RALTDALLDSGTTAIAYETVQT---------ADGALPLLAPMSEVAGRLAAQVGAYHL 148 (370)
T ss_pred CCcEEEEEeccCC-----C---HHHHHHHHHcCCeEEEeeeeec---------cCCCCccccchhHHHHHHHHHHHHHHh
Confidence 5566666666631 0 145555555556666 776641 11223333 22345555555544332
Q ss_pred HHHHhC-C-----CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhc
Q 007499 308 TVRAQG-L-----SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 381 (601)
Q Consensus 308 Alr~~g-~-----~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~ 381 (601)
- |..+ + ....+...+++|+|+|.+|.++++.+... |. ++.++|++- . .+......
T Consensus 149 ~-~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~~----~--~~~~l~~~ 209 (370)
T TIGR00518 149 E-KTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDINI----D--RLRQLDAE 209 (370)
T ss_pred H-hhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECCH----H--HHHHHHHh
Confidence 2 2222 1 11123448999999999999998888653 32 588898741 1 11111112
Q ss_pred cccccCCCCCcccCCCHHHHhcccCCcEEEeecCC-----CCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 382 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 382 fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
|...... ...+...|.+.++. .|++|.+... +..+|++.++.|. ++.+|+-+|-
T Consensus 210 ~g~~v~~--~~~~~~~l~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk----~g~vIvDva~ 268 (370)
T TIGR00518 210 FGGRIHT--RYSNAYEIEDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK----PGAVIVDVAI 268 (370)
T ss_pred cCceeEe--ccCCHHHHHHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC----CCCEEEEEec
Confidence 2111000 00012358888876 8999987532 4568999999993 5678887773
No 48
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.41 E-value=0.44 Score=49.90 Aligned_cols=38 Identities=5% Similarity=-0.238 Sum_probs=29.9
Q ss_pred eecccccccccchhhHHHHHHcCCcccCHHHHHHHHHH
Q 007499 482 GHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEC 519 (601)
Q Consensus 482 ~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~a 519 (601)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34778888888999988888888887888777766554
No 49
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.27 E-value=0.12 Score=57.13 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=75.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEecCccccCCCC-CCChhhhccccc-cCCCCCcccCCCH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMA-GNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 398 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~-Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fa~~-~~~~~~~~~~~~L 398 (601)
.||+|+||||+ -.-.|+..+.... .++ -+.|||+|-+ .+|- .+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~-v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIK-FEKTMDL 68 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 38999999995 4444444444222 344 3689999975 2231 111111222221 11211 1234679
Q ss_pred HHHhcccCCcEEE---------------------e-----ecCCCCCCC--------HHHHHHhhhcCCCCCeEEecCCC
Q 007499 399 LEVVRKVKPHVLL---------------------G-----LSGVGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 399 ~e~V~~vkptvLI---------------------G-----~S~~~g~Ft--------~evv~~Ma~~~~erPIIFaLSNP 444 (601)
.||+++ +|.+| | +.|.+|.|. .++++.|. ++|+..+|+-.|||
T Consensus 69 ~~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~-~~~P~a~lin~TNP 145 (425)
T cd05197 69 EDAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXE-KLSPDAWYLNFTNP 145 (425)
T ss_pred HHHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHH-HhCCCcEEEecCCh
Confidence 999988 67776 1 123345444 38888885 59999999999999
Q ss_pred CCccCCCHHHHhcccCCcEEEEcC
Q 007499 445 TMNAECTAADAFKHAGENIVFASG 468 (601)
Q Consensus 445 t~~aE~tpeda~~wt~Grai~AsG 468 (601)
.. +.-+-+++++...-+|.+|
T Consensus 146 ~d---i~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 146 AG---EVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred HH---HHHHHHHHhCCCCcEEEEC
Confidence 95 5556666777333344444
No 50
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.80 E-value=0.33 Score=51.40 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-.|++..++..+.+++. .+++++|.+- -|..+|.+|... | ..+.+|+++
T Consensus 142 ~~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~--------- 197 (287)
T PRK14176 142 GLVPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF--------- 197 (287)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc---------
Confidence 34567889999999999998888 9999999988 899999888652 3 257777752
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|-+.|.|+.+++++|+
T Consensus 198 --------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 --------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1347888888 89999999999999999776
No 51
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.80 E-value=1 Score=46.58 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhh-------cccccc--CC----
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-------PFAKDP--GD---- 388 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~-------~fa~~~--~~---- 388 (601)
++|.|+|+|..|.+||..+..+ | -+++++|.+-- .+...+. ..++.. .+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 63 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIKQE------QLESAQQEIASIFEQGVARGKLTEAARQ 63 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCCHH------HHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 5799999999999999988753 4 25888887511 1111110 000000 00
Q ss_pred --CCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007499 389 --FMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 466 (601)
Q Consensus 389 --~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~A 466 (601)
........++.+++++ .|++|=+-...-...+++++.+.+ +.....|++ ||.++ ..+.+..++.+-..=+.
T Consensus 64 ~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~-~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 64 AALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADA-HAPAECYIA-TNTST---MSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHh-hCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEE
Confidence 0000123568888888 788885432111123455555533 443344442 44333 55555555443322344
Q ss_pred cCCCCCcee
Q 007499 467 SGSPFENVD 475 (601)
Q Consensus 467 sGSPf~pv~ 475 (601)
..-+|.||.
T Consensus 137 g~h~~~Pv~ 145 (288)
T PRK09260 137 AMHFFNPVH 145 (288)
T ss_pred EEecCCCcc
Confidence 456777774
No 52
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.64 E-value=0.18 Score=52.66 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=42.2
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+.=||-|-.| ++.+++..+..++. ++++|+|||.||..++..|.. .|. ++|+++|+.
T Consensus 104 l~G~NTD~~G--------~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~ 160 (284)
T PRK12549 104 RIGHNTDWSG--------FAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD 160 (284)
T ss_pred EEEEcCCHHH--------HHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC
Confidence 4455666544 77777755555566 999999999999999888775 344 579999985
No 53
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.47 E-value=0.35 Score=51.12 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-+|++..++..+.+++. .+++++|-|- .|.-+|.||.. .| ..+.+|+|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~---------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF---------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC----------
Confidence 3567889999999999998888 9999999988 89999998864 23 357778764
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ .|++|-+.+.|+.|+.++|+
T Consensus 193 -------------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk 222 (285)
T PRK10792 193 -------------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK 222 (285)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC
Confidence 1248888888 89999999999999998877
No 54
>PRK08328 hypothetical protein; Provisional
Probab=92.41 E-value=0.064 Score=54.35 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=74.0
Q ss_pred HHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007499 279 TLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 358 (601)
Q Consensus 279 iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 358 (601)
-++||..++..|..+.| .+|++ .||+++|+|..|.-+|..|+.+ |+ ++
T Consensus 6 ~~~ry~Rq~~~~g~~~q------------------~~L~~---~~VlIiG~GGlGs~ia~~La~~-----Gv------g~ 53 (231)
T PRK08328 6 ELERYDRQIMIFGVEGQ------------------EKLKK---AKVAVVGVGGLGSPVAYYLAAA-----GV------GR 53 (231)
T ss_pred HHHHHhhHHHhcCHHHH------------------HHHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CE
Confidence 35788777766665332 34556 9999999999999999999875 44 68
Q ss_pred EEEEecCccccCCCCCCChhhhccccccCCCCCc-ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCe
Q 007499 359 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL-REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPA 437 (601)
Q Consensus 359 i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~-~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPI 437 (601)
|.++|.+= +. -.+|+.+ .+... .+. +. .......+.++...|++.|=.. .+-++++-+...- .+.-+
T Consensus 54 i~lvD~D~-ve--~sNL~Rq--~l~~~-~dv-G~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~l---~~~D~ 121 (231)
T PRK08328 54 ILLIDEQT-PE--LSNLNRQ--ILHWE-EDL-GKNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEVL---KGVDV 121 (231)
T ss_pred EEEEcCCc-cC--hhhhccc--cccCh-hhc-CchHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHHH---hcCCE
Confidence 99999861 11 1234431 11111 111 00 0001234456777899887654 3556776655542 24567
Q ss_pred EE-ecCCCCCc
Q 007499 438 IF-AMSNPTMN 447 (601)
Q Consensus 438 IF-aLSNPt~~ 447 (601)
|| +.-|+..+
T Consensus 122 Vid~~d~~~~r 132 (231)
T PRK08328 122 IVDCLDNFETR 132 (231)
T ss_pred EEECCCCHHHH
Confidence 77 45576543
No 55
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.41 E-value=0.37 Score=51.28 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..|.+++. ++|+|+|.| ..|..+|.+|... | ..+++++++
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~G---k~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~---------- 192 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTG---KHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR---------- 192 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC----------
Confidence 3466788899999999998888 999999996 9999999999763 3 257777653
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
..++.|++++ .|++|-+-+.++.+++++++ +.-||.=.|
T Consensus 193 -------------------t~~l~e~~~~--ADIVIsavg~~~~v~~~~ik-------~GaiVIDvg 231 (301)
T PRK14194 193 -------------------STDAKALCRQ--ADIVVAAVGRPRLIDADWLK-------PGAVVIDVG 231 (301)
T ss_pred -------------------CCCHHHHHhc--CCEEEEecCChhcccHhhcc-------CCcEEEEec
Confidence 1258888888 89999998889999988754 456777666
No 56
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.27 E-value=0.38 Score=50.87 Aligned_cols=84 Identities=18% Similarity=0.320 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsA-g~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.-++..+.++.. .+++++|.|.- |.-+|.+|.. .| .++.+++++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~-----~~-------atVt~~hs~---------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQ-----AG-------ATVTICHSK---------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEecCC----------
Confidence 4567888999999999999888 99999999988 9999998865 23 256666542
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ .|++|-+.+.++.|+.++++
T Consensus 192 -------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347888888 89999999999999997776
No 57
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.22 E-value=0.35 Score=46.97 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|++.+++.+..+++..|..+++ .+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 6777788888888878888888 99999997 9888888777764 23 378888775
No 58
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.18 E-value=4.6 Score=45.34 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=118.3
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCe-E-EeeCCCCh--HHHHHHHHhccC----Ccc----------ccCcchhHHHHHH
Q 007499 243 LEGEEYLSIVDEFMEAVHARW-PKA-I-FEDFQMKW--AFETLERYRKRF----CMF----------NDDIQGTAGVALA 303 (601)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~-l-~EDf~~~~--Af~iL~ryr~~~----~~F----------nDDiQGTaav~LA 303 (601)
.+-.|...|.-.||..+.... |.. + =+|++..- ---|.+.|+..- -+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 566778889999999998876 543 4 77776532 223667775431 232 2333457777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccc
Q 007499 304 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 383 (601)
Q Consensus 304 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa 383 (601)
++-.+++..|.+|+. +||+|-|.|..|...|+.|.++.. +=+-+.|++|-|++.. .|+..+..|.
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~GA-----------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLELGG-----------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHCCC-----------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 888888988988888 999999999999999999876432 2345699999888653 4665443321
Q ss_pred ccc-----CCCCCc-----ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 007499 384 KDP-----GDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 445 (601)
Q Consensus 384 ~~~-----~~~~~~-----~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt 445 (601)
... ...... ....+-.+ +-.++.|+||=+.. .+..|++.++.+.+..+ -+|.--+| |+
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g~--~~V~EgAN~P~ 347 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANGV--IAVSEGANMPS 347 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcCC--eEEECCCCCCC
Confidence 100 000000 00011112 11356899997665 79999999999843112 37777888 54
No 59
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.90 E-value=1.4 Score=50.13 Aligned_cols=173 Identities=17% Similarity=0.263 Sum_probs=89.3
Q ss_pred hhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE-EeeCCCChHHHHHHHHhccCCccc--cCcchhHHHHHH
Q 007499 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-FEDFQMKWAFETLERYRKRFCMFN--DDIQGTAGVALA 303 (601)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~Fn--DDiQGTaav~LA 303 (601)
+.|.++-.|+|+=|+--. .|.++++.++-=+++ ||.+-. | +|- .++.+|. .-|-|-.+|..|
T Consensus 80 ~~l~~g~tli~~l~p~~n--------~~ll~~l~~k~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi~A 144 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN--------PELMEKLAAKNITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAIIEA 144 (511)
T ss_pred HhcCCCCEEEEEcCccCC--------HHHHHHHHHcCCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHHHH
Confidence 345566677777775331 456666666655666 886531 0 111 2233332 355666666665
Q ss_pred HHHHHHHHhCC--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChh---
Q 007499 304 GLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA--- 378 (601)
Q Consensus 304 gll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~--- 378 (601)
+-.-.-..+|. .+..+...|++|+|+|.+|+..+..+... | -+++.+|.+.-...--..+...
T Consensus 145 a~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----G-------A~V~v~d~~~~rle~a~~lGa~~v~ 212 (511)
T TIGR00561 145 AHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----G-------AIVRAFDTRPEVKEQVQSMGAEFLE 212 (511)
T ss_pred HHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCHHHHHHHHHcCCeEEe
Confidence 43333222221 11112238999999999999887766553 3 1477778764311000001000
Q ss_pred ---------hhccccccCC-CCCcccCCCHHHHhcccCCcEEEeecCCCC-----CCCHHHHHHhh
Q 007499 379 ---------AAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMR 429 (601)
Q Consensus 379 ---------k~~fa~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Ft~evv~~Ma 429 (601)
..-|++...+ .. ..+..-+.+.++. .|++|++.-+|| +.|+++++.|.
T Consensus 213 v~~~e~g~~~~gYa~~~s~~~~-~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK 275 (511)
T TIGR00561 213 LDFKEEGGSGDGYAKVMSEEFI-AAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK 275 (511)
T ss_pred ccccccccccccceeecCHHHH-HHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC
Confidence 0011111000 00 0001115555666 899999984444 59999999994
No 60
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=91.72 E-value=0.23 Score=54.90 Aligned_cols=129 Identities=15% Similarity=0.259 Sum_probs=74.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH-hcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccc-cCCCCCcccCCCH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAAR-MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASL 398 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~-~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~-~~~~~~~~~~~~L 398 (601)
.||+|+||||+ -.-.+ +..+.. ...++ .+.|||+|-+- ..| .-+...-+.+.+. ..++. .....++
T Consensus 1 ~KI~iIGaGS~--~tp~l-i~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~-v~~t~d~ 69 (419)
T cd05296 1 MKLTIIGGGSS--YTPEL-IEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIK-VHLTTDR 69 (419)
T ss_pred CEEEEECCchH--hHHHH-HHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 38999999996 33344 444442 23333 26899999862 111 0011111111111 11111 1234679
Q ss_pred HHHhcccCCcEEEeecCCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCC
Q 007499 399 LEVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~~erPIIFaLSNP 444 (601)
.||++. +|.+|-.-.++|. .=.++++.|. ++|..-+|+=.|||
T Consensus 70 ~~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~-~~~Pda~lin~TNP 146 (419)
T cd05296 70 REALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVE-ELAPDAWLINFTNP 146 (419)
T ss_pred HHHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHH-HHCCCeEEEEecCH
Confidence 999988 6777643333321 1237778885 49999999999999
Q ss_pred CCccCCCHHHHhcccCCcEEEEcC
Q 007499 445 TMNAECTAADAFKHAGENIVFASG 468 (601)
Q Consensus 445 t~~aE~tpeda~~wt~Grai~AsG 468 (601)
.. +..+-+++++.-|+| .+|
T Consensus 147 ~~---ivt~a~~k~~~~rvi-Glc 166 (419)
T cd05296 147 AG---IVTEAVLRHTGDRVI-GLC 166 (419)
T ss_pred HH---HHHHHHHHhccCCEE-eeC
Confidence 96 666777778855554 443
No 61
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=91.41 E-value=0.27 Score=50.56 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=87.3
Q ss_pred CcchhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCC
Q 007499 293 DIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 371 (601)
Q Consensus 293 DiQGTaav~LAgll~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~ 371 (601)
--+-||-=+..++-.+++..+.. ++. .||+|-|.|..|...|+.|.+. |. +=+-+.|++|.|++.
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~ 71 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDP 71 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEET
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcC
Confidence 34567777888888999986665 666 9999999999999999998874 32 345667888888864
Q ss_pred CC----CCChhhhccccccCCCCCc-c---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH-HhhhcCCCCCeEEecC
Q 007499 372 RK----NLDPAAAPFAKDPGDFMGL-R---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK-AMRESDSVKPAIFAMS 442 (601)
Q Consensus 372 r~----~l~~~k~~fa~~~~~~~~~-~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~~erPIIFaLS 442 (601)
.. .|..++...--.-...... + +..+=.+.+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+
T Consensus 72 ~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~---~~akiIvegA 147 (244)
T PF00208_consen 72 DGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK---SGAKIIVEGA 147 (244)
T ss_dssp TEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH---TT-SEEEESS
T ss_pred CCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh---ccCcEEEeCc
Confidence 31 1222221110000000000 0 00111113445689999988 568999999999 763 3578999999
Q ss_pred C-CCC
Q 007499 443 N-PTM 446 (601)
Q Consensus 443 N-Pt~ 446 (601)
| |++
T Consensus 148 N~p~t 152 (244)
T PF00208_consen 148 NGPLT 152 (244)
T ss_dssp SSSBS
T ss_pred chhcc
Confidence 9 553
No 62
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.40 E-value=1.2 Score=50.58 Aligned_cols=191 Identities=20% Similarity=0.248 Sum_probs=95.1
Q ss_pred hhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE-EeeCCC---ChHHHHHHHHhccCCccccCcchhHHHHH
Q 007499 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI-FEDFQM---KWAFETLERYRKRFCMFNDDIQGTAGVAL 302 (601)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l-~EDf~~---~~Af~iL~ryr~~~~~FnDDiQGTaav~L 302 (601)
+.|.++-.++|+=|+--. .|.+++..++-=+++ +|.+-. ...+.+|. -+-.|-|=-||..
T Consensus 81 ~~l~~g~~li~~l~p~~~--------~~l~~~l~~~~it~ia~e~vpr~sraq~~d~ls--------sma~IAGy~Av~~ 144 (509)
T PRK09424 81 ALLREGATLVSFIWPAQN--------PELLEKLAARGVTVLAMDAVPRISRAQSLDALS--------SMANIAGYRAVIE 144 (509)
T ss_pred HhcCCCCEEEEEeCcccC--------HHHHHHHHHcCCEEEEeecccccccCCCccccc--------chhhhhHHHHHHH
Confidence 345566677777776221 456666666665666 777642 22222222 2334556555554
Q ss_pred HHHHHHHHHhCC--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC----
Q 007499 303 AGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD---- 376 (601)
Q Consensus 303 Agll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~---- 376 (601)
|+-.-.--..|. -+......||+|+|||.+|++.+..... .| | +++.+|.+---..--+.+-
T Consensus 145 aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~~rle~aeslGA~~v 212 (509)
T PRK09424 145 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRPEVAEQVESMGAEFL 212 (509)
T ss_pred HHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCHHHHHHHHHcCCeEE
Confidence 443221111110 0111223899999999999888665543 34 2 4777876410000000000
Q ss_pred --------hhhhccccccCC-CCCcccCCCHHHHhcccCCcEEEeecCCCC-----CCCHHHHHHhhhcCCCCCeEEecC
Q 007499 377 --------PAAAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 377 --------~~k~~fa~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
.....|++...+ +. ......+.+.++ +.|++|.+++.+| +++++.++.|. ..-+|.=++
T Consensus 213 ~i~~~e~~~~~~gya~~~s~~~~-~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk----pGgvIVdvg 285 (509)
T PRK09424 213 ELDFEEEGGSGDGYAKVMSEEFI-KAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK----PGSVIVDLA 285 (509)
T ss_pred EeccccccccccchhhhcchhHH-HHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC----CCCEEEEEc
Confidence 001112221100 00 000011222223 3899999999876 67999999993 455666677
Q ss_pred CCC-CccCCCH
Q 007499 443 NPT-MNAECTA 452 (601)
Q Consensus 443 NPt-~~aE~tp 452 (601)
-+. ..+|++.
T Consensus 286 ~~~GG~~e~t~ 296 (509)
T PRK09424 286 AENGGNCELTV 296 (509)
T ss_pred cCCCCCccccc
Confidence 653 3335543
No 63
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.29 E-value=1.8 Score=48.52 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=122.4
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCe-E-EeeCCCChHHH---HHHHHhcc----CCccc----------cCcchhHHHHH
Q 007499 243 LEGEEYLSIVDEFMEAVHARW-PKA-I-FEDFQMKWAFE---TLERYRKR----FCMFN----------DDIQGTAGVAL 302 (601)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~-l-~EDf~~~~Af~---iL~ryr~~----~~~Fn----------DDiQGTaav~L 302 (601)
.+..|...|.-.||+.+.+.. |+. + =.|++. ++.. +.+.|+.- ..++. +--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 455688889999999988543 543 4 677774 3322 45666652 12221 11123777778
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhc-
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP- 381 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~- 381 (601)
.++-.+++..|.+|+. .||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|++.. .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~ 277 (445)
T PRK14030 213 YFVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDY 277 (445)
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 8888889988988878 9999999999999999998654 43 4577789999998754 35543311
Q ss_pred ---cccccC--------CCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccC
Q 007499 382 ---FAKDPG--------DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAE 449 (601)
Q Consensus 382 ---fa~~~~--------~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE 449 (601)
+..... ..++ ....+-.+ +-.++.||||=+.. .+..|++.++.+. .+.-.||.=-+| |+.
T Consensus 278 l~~~k~~~~~~~~~~~~~~~g-a~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~--~~~ak~V~EgAN~p~t--- 349 (445)
T PRK14030 278 MLELRASGNDIVAPYAEKFPG-STFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLI--KNGVLCVAEVSNMGCT--- 349 (445)
T ss_pred HHHHHHhcCccHHHHHhcCCC-CEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHH--HcCCeEEEeCCCCCCC---
Confidence 100000 0000 00011122 22467899997775 7999999999994 356789999999 543
Q ss_pred CCHHHHhc
Q 007499 450 CTAADAFK 457 (601)
Q Consensus 450 ~tpeda~~ 457 (601)
-.+++++.
T Consensus 350 ~eA~~iL~ 357 (445)
T PRK14030 350 AEAIDKFI 357 (445)
T ss_pred HHHHHHHH
Confidence 22445554
No 64
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.23 E-value=5.8 Score=41.11 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 43 68899975
No 65
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.22 E-value=0.35 Score=50.85 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=42.2
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+.=||-|.. |++.+++..+..++. .+++++|||-|+.+|+-.+.. .|. ++|+++++.
T Consensus 101 l~G~NTD~~--------Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 101 LRGYNTDGT--------GHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 344566654 477888877777777 999999999998777665543 454 589999984
No 66
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.22 E-value=0.6 Score=49.31 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-+|++.=++..+.+++. +++|++|-+ ..|.-+|.||... | ..+.+++|+
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~~VG~Pla~lL~~~-----~-------AtVti~hs~--------- 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKG---KDVCVVGASNIVGKPMAALLLNA-----N-------ATVDICHIF--------- 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----C-------CEEEEeCCC---------
Confidence 44567888899999999998888 999999998 8899999888642 3 245555542
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.|+.++|+.
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 191 --------------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCcccccCHHHcCC
Confidence 1247788888 899999999999999999983
No 67
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.06 E-value=0.43 Score=49.88 Aligned_cols=58 Identities=19% Similarity=0.414 Sum_probs=40.8
Q ss_pred cCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 286 RFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 286 ~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++.-+|-|- .|++.+++..+..++. ++++|+|||-+|.+||..+. +.|. ++|+++++.
T Consensus 102 ~l~G~NTD~--------~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~La-----~~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITDG--------LGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQCA-----LDGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecCH--------HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHH-----HCCC------CEEEEEeCC
Confidence 355677774 4477788876666666 99999999866666655544 3454 579999984
No 68
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.03 E-value=0.6 Score=49.76 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=75.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 399 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~ 399 (601)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+-=..... -++.+.. .+....... ....++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~~-~~~~~~~~I---~~~~d~- 69 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHSN-VIAGSNSKV---IGTNNY- 69 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhhh-hccCCCeEE---EECCCH-
Confidence 3789999999999999887653 4652 399999753222111 1222211 111111011 112456
Q ss_pred HHhcccCCcEEEeecCCCCCC-------------------CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC
Q 007499 400 EVVRKVKPHVLLGLSGVGGVF-------------------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG 460 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~F-------------------t~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~ 460 (601)
+++++ .|++|=+.+.++.- -.++++.|.+ ++..-+++--|||.. .....+.+.+.
T Consensus 70 ~~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~-~~p~a~~iv~sNP~d---i~t~~~~~~sg 143 (321)
T PTZ00082 70 EDIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK-YCPNAFVIVITNPLD---VMVKLLQEHSG 143 (321)
T ss_pred HHhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHhcC
Confidence 56777 79988555443211 2467777754 777779999999995 45555666552
Q ss_pred --CcEEEEcCCCC
Q 007499 461 --ENIVFASGSPF 471 (601)
Q Consensus 461 --Grai~AsGSPf 471 (601)
-+-+|.+|+-.
T Consensus 144 ~p~~rviGlgt~l 156 (321)
T PTZ00082 144 LPKNKVCGMAGVL 156 (321)
T ss_pred CChhhEEEecCcc
Confidence 13466777433
No 69
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.98 E-value=0.51 Score=49.81 Aligned_cols=85 Identities=19% Similarity=0.359 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-.|++.=++..+.+++. .+++++|-+ .-|.-+|.++... | ..+..++|+
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~--------- 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK--------- 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC---------
Confidence 44567888999999999998888 999999998 8888888877642 2 356777653
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|++-+.++.+|+++|+
T Consensus 186 --------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 --------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred --------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1248888988 89999999999999999974
No 70
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.89 E-value=0.94 Score=44.05 Aligned_cols=86 Identities=17% Similarity=0.347 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+.--+|-.|++.-++..+.+++. .+++++|.+. -|.-+|.||... |. .+.+++++
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~--------- 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK--------- 69 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT---------
T ss_pred CCcCCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC---------
Confidence 33456888899999999998888 9999999984 888888877653 22 35566653
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-..++++.++.++||.
T Consensus 70 --------------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 --------------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp --------------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred --------------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1348888887 899999999999999998874
No 71
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.89 E-value=0.67 Score=49.00 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.-++..+.+++. .+++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~---------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK---------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC----------
Confidence 4567888999999999998888 999999975 678888888764 23 256677652
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|.+.+.++.|++++|+
T Consensus 192 -------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888988 89999999999999999986
No 72
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.76 E-value=0.35 Score=49.49 Aligned_cols=127 Identities=21% Similarity=0.253 Sum_probs=78.1
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCC-CCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 324 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 324 iv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+. ..+|.+...++ ... . .....++.++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~---i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-K---VSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-E---EEECCchHHH
Confidence 579999 98899998877653 31 112579999986411111 11233332222 111 1 1124568899
Q ss_pred hcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEEE
Q 007499 402 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 465 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt--~Grai~ 465 (601)
+++ .|++|=+.+.++. .-+++.+.|. +++...+++-.|||.. ....-+++++ .-+-+|
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~~i~~tNP~d---~~t~~~~~~sg~~~~kvi 141 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIE-KYSPDAWIIVVSNPVD---IITYLVWRYSGLPKEKVI 141 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEecCcHH---HHHHHHHHHhCCCchhEE
Confidence 988 7888754443322 2467888885 4899999999999995 6666777763 223356
Q ss_pred EcCC
Q 007499 466 ASGS 469 (601)
Q Consensus 466 AsGS 469 (601)
++|.
T Consensus 142 G~~~ 145 (263)
T cd00650 142 GLGT 145 (263)
T ss_pred Eeec
Confidence 6664
No 73
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.74 E-value=0.95 Score=45.62 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhCC---------CCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 299 GVALAGLLGTVRAQGL---------SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 299 av~LAgll~Alr~~g~---------~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
-+|-.|++-=++..+. +++. ++++|+|-+ ..|.-+|.||.. .| ..+.+||++|..
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~ 98 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQ 98 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccc
Confidence 4566677776776654 5666 999999986 467777777754 33 368999999987
Q ss_pred cCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHH
Q 007499 369 TKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKA 427 (601)
Q Consensus 369 ~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~ 427 (601)
...+.....|.+ .+. . ....+|.|.+++ +|++|-.-+.++. ++.|+|+.
T Consensus 99 ~~~~~~~~~hs~--t~~-~-----~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 99 VFTRGESIRHEK--HHV-T-----DEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred cccccccccccc--ccc-c-----chhhHHHHHhhh--CCEEEEccCCCCCccCHHHcCC
Confidence 755432111110 000 0 001248899998 8999999999998 89999883
No 74
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.72 E-value=1.7 Score=47.76 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ +++.+|... ...
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~~- 152 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QEA- 152 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------ccc-
Confidence 3445788899999888888777 9999999999999999988764 43 688888631 000
Q ss_pred hhhhccccccCCCCCcccCCCHHHHhcccCCcEEEe-ec-------CCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007499 377 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG-LS-------GVGGVFNEEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 377 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG-~S-------~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 444 (601)
... ....+|.|+++. .|+++= +. ..-+.|+++.+..|. +..++.=.|.-
T Consensus 153 -------~~~------~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk----~gailIN~aRG 209 (381)
T PRK00257 153 -------EGD------GDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR----PGAWLINASRG 209 (381)
T ss_pred -------ccC------ccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC----CCeEEEECCCC
Confidence 000 013469999887 787662 11 124899999999994 57788877753
No 75
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.69 E-value=0.38 Score=50.44 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++=||-|-.| ++.+++..+..+++ .+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~~G--------f~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVSG--------FGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHHH--------HHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 4566777654 77777754445666 999999999999888777664 344 589999984
No 76
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.51 E-value=0.46 Score=49.55 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=73.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCC--CCC-cccCCCH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 398 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~--~~~-~~~~~~L 398 (601)
.||.|+|||..|.++|..+.. .|+ . .++++|.+ .++ +......+.+.... ... .....+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~~d~ 65 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGTNDY 65 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeCCCH
Confidence 589999999999999987764 233 1 69999983 111 11111111111000 000 0112456
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC---
Q 007499 399 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--- 461 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~G--- 461 (601)
+++++ .|++|=+.+.| | -.-+++++.|.+ ++...+++-.|||.. ....-+++++ |
T Consensus 66 -~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 66 -EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKK-YAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred -HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 45666 78888332222 2 123456666743 788888888899995 5666666666 4
Q ss_pred cEEEEcCCCCC
Q 007499 462 NIVFASGSPFE 472 (601)
Q Consensus 462 rai~AsGSPf~ 472 (601)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 45788885554
No 77
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.42 E-value=0.87 Score=48.38 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=77.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 399 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~ 399 (601)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+--...+. -++.+.. .+...... .....+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~~-~~~~~~~~---i~~~~d~~ 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHFS-TLVGSNIN---ILGTNNYE 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhhc-cccCCCeE---EEeCCCHH
Confidence 3799999999999999887664 3542 499999752111111 1222221 11111000 01124566
Q ss_pred HHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007499 400 EVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 463 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--Gra 463 (601)
++++ .|++|=+.+.+.. .-+++.+.|.+ ++..-+++-.|||.. .....+.++++ =.-
T Consensus 70 -~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~-~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~r 142 (319)
T PTZ00117 70 -DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKK-YCPNAFVICVTNPLD---CMVKVFQEKSGIPSNK 142 (319)
T ss_pred -HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecChHH---HHHHHHHHhhCCCccc
Confidence 6677 7888755544322 23488888864 888998888899995 55666666652 133
Q ss_pred EEEcCCCCC
Q 007499 464 VFASGSPFE 472 (601)
Q Consensus 464 i~AsGSPf~ 472 (601)
+|++|+-.+
T Consensus 143 viG~gt~ld 151 (319)
T PTZ00117 143 ICGMAGVLD 151 (319)
T ss_pred EEEecchHH
Confidence 667774433
No 78
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.34 E-value=0.55 Score=43.26 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhcc
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 382 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~f 382 (601)
.|+.+|++..+..++. .+++|+|+|..|..+++.+.+ .|. .+++++|++- . ........+
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~-----~g~------~~v~v~~r~~----~--~~~~~~~~~ 63 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAE-----LGA------AKIVIVNRTL----E--KAKALAERF 63 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCCH----H--HHHHHHHHH
Confidence 5889999988877777 999999999888888777754 221 4788888741 1 111111122
Q ss_pred ccccCCCCCcccCCCHHHHhcccCCcEEEeecC
Q 007499 383 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 415 (601)
Q Consensus 383 a~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 415 (601)
...... ....++.++++. +|++|-+..
T Consensus 64 ~~~~~~----~~~~~~~~~~~~--~Dvvi~~~~ 90 (155)
T cd01065 64 GELGIA----IAYLDLEELLAE--ADLIINTTP 90 (155)
T ss_pred hhcccc----eeecchhhcccc--CCEEEeCcC
Confidence 110000 012456666665 899997764
No 79
>PLN02928 oxidoreductase family protein
Probab=90.24 E-value=2.4 Score=45.79 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=83.7
Q ss_pred chhHHHHHHHHHHHHHHh------------CCC-CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 007499 295 QGTAGVALAGLLGTVRAQ------------GLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 361 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~------------g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~l 361 (601)
+.+|--+++.+|+.+|.. +.+ -.+|.+.++.|+|.|..|..+|+.+... |+ +|+.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 345666677777666632 011 1245559999999999999999998754 43 6888
Q ss_pred EecCccccCCCC-CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCC
Q 007499 362 LDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKP 436 (601)
Q Consensus 362 vD~~GLi~~~r~-~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~~erP 436 (601)
+|+.. ..... .+. .+......... . .....+|.|+++. .|+++-.- ...+.|+++.+..|. +..
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk----~ga 256 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVD-E-KGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK----KGA 256 (347)
T ss_pred ECCCC--Chhhhhhhc-ccccccccccc-c-cCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC----CCe
Confidence 88741 01000 000 00011000000 0 0123579999988 79988542 224899999999994 567
Q ss_pred eEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007499 437 AIFAMSNPTMNAECTAADAFKHAGENIVFA 466 (601)
Q Consensus 437 IIFaLSNPt~~aE~tpeda~~wt~Grai~A 466 (601)
++.=.|.-.---|----+|+ ..|+.-.|
T Consensus 257 ~lINvaRG~lVde~AL~~AL--~~g~i~gA 284 (347)
T PLN02928 257 LLVNIARGGLLDYDAVLAAL--ESGHLGGL 284 (347)
T ss_pred EEEECCCccccCHHHHHHHH--HcCCeeEE
Confidence 88877754332122222333 35665544
No 80
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.19 E-value=0.82 Score=48.39 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-+|++.=++..|.+++. .+++|+|. |..|.-+|.+|..+ |. .+.++.++
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~---------- 191 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR---------- 191 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC----------
Confidence 4567788889999999998888 99999999 99999999999763 32 35544321
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
..+|.+.+++ .|++|-+-+.++.+++++++ +..+|.=.|
T Consensus 192 -------------------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik-------~GavVIDvg 230 (284)
T PRK14179 192 -------------------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK-------EGAVVIDVG 230 (284)
T ss_pred -------------------CCCHHHHHhh--CCEEEEecCccccCCHHHcc-------CCcEEEEec
Confidence 1358888988 89999999999999998755 345665554
No 81
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.06 E-value=1.1 Score=47.66 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 298 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 298 aav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.-+|-.|++.=++..+.+++. ++++|+|.+ ..|.-+|.||.+.+. +.| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~----------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA----------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC-----------
Confidence 446777888889999998888 999999986 578888888875332 122 245555542
Q ss_pred hhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 377 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 377 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ------------------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ------------------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ------------------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1348889988 89999999999999999995
No 82
>PTZ00325 malate dehydrogenase; Provisional
Probab=90.00 E-value=1.6 Score=46.83 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=66.9
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCH
Q 007499 320 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 398 (601)
Q Consensus 320 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L 398 (601)
+-.||+|+|| |..|..+|..|+. .|+ ...+.|+|.+ .....--+|.+.... .. .....+..+.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~~g~a~Dl~~~~~~-~~----v~~~td~~~~ 70 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GAPGVAADLSHIDTP-AK----VTGYADGELW 70 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CCcccccchhhcCcC-ce----EEEecCCCch
Confidence 3479999999 9999999877652 233 2579999993 211101134332110 00 0000011334
Q ss_pred HHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 399 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
.+++++ .|++|=+.+.+ |. ..+++++.|.+ ++.+.||+.-|||..
T Consensus 71 ~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~-~~~~~iviv~SNPvd 129 (321)
T PTZ00325 71 EKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVAS-SAPKAIVGIVSNPVN 129 (321)
T ss_pred HHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH
Confidence 788888 79877555443 31 44688889964 888999999999995
No 83
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.95 E-value=2.1 Score=48.12 Aligned_cols=130 Identities=21% Similarity=0.193 Sum_probs=67.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhh----h--ccccccCC-CCC-cc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA----A--PFAKDPGD-FMG-LR 393 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k----~--~fa~~~~~-~~~-~~ 393 (601)
.||.|+|+|..|.+||..++.+ |. +++++|.+-=-. ..+.... . .+...... ..+ ..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 69 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHPEAE---RIIGEVLANAERAYAMLTDAPLPPEGRLT 69 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCHHHH---HHHHHHHHHHHHHHhhhccchhhhhhceE
Confidence 5799999999999999998764 53 588888741100 0111000 0 00000000 000 11
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcc--cCCcEEEEcCCC
Q 007499 394 EGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH--AGENIVFASGSP 470 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~w--t~Grai~AsGSP 470 (601)
-..++.|++++ .|++| .+..... +.+++.+.+.+ +.+.-.|+..|--.. .+.+..+. ..|+++++ .|
T Consensus 70 ~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~-~~~~~~iI~SsTsgi----~~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 70 FCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDA-AARPDALIGSSTSGF----LPSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred eeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCC----CHHHHHhhcCCcceEEEE--ec
Confidence 23579999988 68887 4443332 45556555532 344345665553332 23332222 24555554 68
Q ss_pred CCceec
Q 007499 471 FENVDL 476 (601)
Q Consensus 471 f~pv~~ 476 (601)
|.|+.+
T Consensus 140 ~nP~~~ 145 (495)
T PRK07531 140 YNPVYL 145 (495)
T ss_pred CCCccc
Confidence 888865
No 84
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=89.92 E-value=0.51 Score=49.20 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=42.2
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
+.=+|-|..| ++.+++..+. .+++ ++++++|||.||-.|+..|.+ .|. ++|+++++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nR 157 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINR 157 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeC
Confidence 5557888765 7777776553 4666 999999999998887776654 454 57999987
Q ss_pred C
Q 007499 365 D 365 (601)
Q Consensus 365 ~ 365 (601)
.
T Consensus 158 t 158 (282)
T TIGR01809 158 N 158 (282)
T ss_pred C
Confidence 4
No 85
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.57 E-value=0.28 Score=47.00 Aligned_cols=95 Identities=21% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc-cc------------cCCCCCCChhhhccccc
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG-LI------------TKERKNLDPAAAPFAKD 385 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G-Li------------~~~r~~l~~~k~~fa~~ 385 (601)
+...+|||.|+|.+|.|.++++..... ++..+|..= .+ +.....+... .|.+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLERK--DFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB---CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEccccccccc--ccchh
Confidence 334899999999999999999887543 455555520 00 0000000000 02221
Q ss_pred cCCCCCcccCCCHHHHhcccCCcEEEeec-----CCCCCCCHHHHHHhh
Q 007499 386 PGDFMGLREGASLLEVVRKVKPHVLLGLS-----GVGGVFNEEVLKAMR 429 (601)
Q Consensus 386 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S-----~~~g~Ft~evv~~Ma 429 (601)
...-........|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 0000000122458888887 69999743 335689999999993
No 86
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.55 E-value=0.49 Score=49.98 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=73.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhh-hccccccCC--CCC-cccCCC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGD--FMG-LREGAS 397 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k-~~fa~~~~~--~~~-~~~~~~ 397 (601)
.||.|+|+|..|.++|..++.. |+ -.++++|..-- +...+ ..+.+.... ... .....+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~------~~VvlvDi~~~-------l~~g~a~d~~~~~~~~~~~~~i~~t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL------ADLVLLDVVEG-------IPQGKALDMYEASPVGGFDTKVTGTNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCCC-------hhHHHHHhhhhhhhccCCCcEEEecCC
Confidence 4899999999999999977642 33 14999998322 22211 111111100 000 112356
Q ss_pred HHHHhcccCCcEEEeecCCC---C-C------CCH----HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--C
Q 007499 398 LLEVVRKVKPHVLLGLSGVG---G-V------FNE----EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 461 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~~---g-~------Ft~----evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--G 461 (601)
+.+ +++ .|++|=+.+.| | . ++- ++++.|.+ ++...+|+-.|||.. +...-++++++ -
T Consensus 64 ~~~-~~~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~-~~p~~~iIv~tNP~d---i~t~~~~~~sg~~~ 136 (305)
T TIGR01763 64 YAD-TAN--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIME-HSPNPIIVVVSNPLD---AMTYVAWQKSGFPK 136 (305)
T ss_pred HHH-hCC--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHHCcCH
Confidence 776 666 68876443322 2 1 333 45555643 788999999999995 77777777742 2
Q ss_pred cEEEEcCCCCC
Q 007499 462 NIVFASGSPFE 472 (601)
Q Consensus 462 rai~AsGSPf~ 472 (601)
+-+|.+|.=.+
T Consensus 137 ~rviG~g~~ld 147 (305)
T TIGR01763 137 ERVIGQAGVLD 147 (305)
T ss_pred HHEEEeccchH
Confidence 23677774433
No 87
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.55 E-value=2 Score=44.98 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||.|+|+|..|.++|..+..+ | -+++++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 6899999999999999999764 3 257777775
No 88
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.11 E-value=0.48 Score=43.53 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=30.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
+.||+++|+|+-|.-+|+.|+...+ ++|.++|.+=+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcce
Confidence 4899999999999999999987644 68999999733
No 89
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.10 E-value=1.2 Score=46.92 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-+|++.=++..+.+++. ++++++|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~---------- 191 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEG---KEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK---------- 191 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC----------
Confidence 3567888999999999998888 999999975 578888888864 23 257777653
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|-+.+.|+.|++++|+
T Consensus 192 -------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 -------------------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888888 89999999999999999988
No 90
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.10 E-value=8.7 Score=41.13 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCeEEeeCCCChHHHHHHHHhccCCcccc-C--cchhHHHHHHHHHHHHHHh---------C-----CC
Q 007499 253 DEFMEAVHARWPKAIFEDFQMKWAFETLERYRKRFCMFND-D--IQGTAGVALAGLLGTVRAQ---------G-----LS 315 (601)
Q Consensus 253 defv~av~~~~P~~l~EDf~~~~Af~iL~ryr~~~~~FnD-D--iQGTaav~LAgll~Alr~~---------g-----~~ 315 (601)
.|++++..+.--+.+.---..-+...+-.--+..+.+.|- + -+.+|=-+++.+|+.+|.. | ..
T Consensus 59 ~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~ 138 (332)
T PRK08605 59 EAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP 138 (332)
T ss_pred HHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc
Confidence 5677665542122331111222223333223345776664 2 2456667788888877621 1 11
Q ss_pred --CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcc
Q 007499 316 --LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 393 (601)
Q Consensus 316 --l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~ 393 (601)
-.+|.+++|.|+|.|..|..+|+.+..+ .|+ ++|.+|+..- .....++.
T Consensus 139 ~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~~---------~~~~~~~~--------- 189 (332)
T PRK08605 139 ILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFPN---------AKAATYVD--------- 189 (332)
T ss_pred cccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCcc---------HhHHhhcc---------
Confidence 1245569999999999999999998532 243 6888887420 00011111
Q ss_pred cCCCHHHHhcccCCcEEEeec-C---CCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007499 394 EGASLLEVVRKVKPHVLLGLS-G---VGGVFNEEVLKAMRESDSVKPAIFAMSNPT 445 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S-~---~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt 445 (601)
...+|.|+++. .|+++=+. . ..+.|+++.++.|. +..++.=+|.=.
T Consensus 190 ~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk----~gailIN~sRG~ 239 (332)
T PRK08605 190 YKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK----KGAVFVNCARGS 239 (332)
T ss_pred ccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC----CCcEEEECCCCc
Confidence 12479999987 79887542 1 23678888888883 567888777643
No 91
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.01 E-value=1.3 Score=46.97 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 298 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 298 aav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.-+|-.|++.=++..+.+++. ++++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~----------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK----------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 355677888888889998888 999999975 578888888764 23 257777653
Q ss_pred hhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 377 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 377 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|.+.+.++.++.++|+.
T Consensus 193 ------------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 ------------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcCC
Confidence 1348888888 899999999999999999883
No 92
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.00 E-value=1 Score=47.75 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-+|++.=++..+.+++. ++++++|.+ ..|.-+|.||..... ..| ..+..++++
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~---------- 194 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR---------- 194 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC----------
Confidence 4567888999999999998888 999999985 567888887764110 012 246666653
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|++.+.|+.+++++|+
T Consensus 195 -------------------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 -------------------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1348888988 89999999999999999985
No 93
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.62 E-value=1.3 Score=46.82 Aligned_cols=86 Identities=15% Similarity=0.333 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-+|++.=++..|.+++. ++++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~--------- 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEG---KRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR--------- 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------
Confidence 34567788899999999998888 999999986 567788877764 23 246666553
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.|++++|+.
T Consensus 191 --------------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 --------------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred --------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888888 899999999999999999883
No 94
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.40 E-value=3.3 Score=45.47 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
..|=-+++.+++..|..|..|.+ .+|.|+|.|..|-.+|+.+... |+ ++..+|+. +..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~- 151 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD- 151 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc-
Confidence 45556788899888888877777 9999999999999999998764 43 68888852 110
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEe---ecC-----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG---LSG-----VGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG---~S~-----~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
. ... ....+|.|++++ .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 152 ~-------~~~------~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk----~gailIN~aR 208 (378)
T PRK15438 152 R-------GDE------GDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK----PGAILINACR 208 (378)
T ss_pred c-------ccc------cccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC----CCcEEEECCC
Confidence 0 000 012479999877 788872 111 24789999999994 5778887665
No 95
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.39 E-value=11 Score=38.97 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=54.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 399 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~ 399 (601)
..||.|+|+|.-|..||+.|+.. | +.. .+|+++|+. -.+....++.... .....+..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~~~----~~v~v~~r~---------~~~~~~~l~~~~g----~~~~~~~~ 60 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVVKG----EQITVSNRS---------NETRLQELHQKYG----VKGTHNKK 60 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCCCc----ceEEEECCC---------CHHHHHHHHHhcC----ceEeCCHH
Confidence 37999999999999999988653 3 211 357776652 0111112221100 01124577
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 400 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
|+++. .|++| ++..+. ..+++++.+.....+..+|.-+++-++
T Consensus 61 e~~~~--aDvVi-lav~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 61 ELLTD--ANILF-LAMKPK-DVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred HHHhc--CCEEE-EEeCHH-HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 77765 67655 332233 335666666432345667777765543
No 96
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.36 E-value=0.78 Score=48.44 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 304 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 304 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
|++.+++..+.+. +++.+++|++|||-|+.+|+-.|.++ |. ++|++++|
T Consensus 110 G~~~~L~~~~~~~-~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPV-DVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCc-ccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 3778888766331 22339999999999999998877764 43 68999998
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.29 E-value=15 Score=38.29 Aligned_cols=129 Identities=20% Similarity=0.272 Sum_probs=64.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhc----ccc--ccC---CCCC-
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP----FAK--DPG---DFMG- 391 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~----fa~--~~~---~~~~- 391 (601)
++|.|+|+|..|.+||..+... |. +++++|.+-= .+...+.. +.. +.. ...+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVMEG------ALERARGVIERALGVYAPLGIASAGMGR 66 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCHH------HHHHHHHHHHHHHHHhhhcccHHHHhhc
Confidence 5799999999999999988653 42 5888886411 11111110 000 000 0000
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCC
Q 007499 392 LREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP 470 (601)
Q Consensus 392 ~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSP 470 (601)
.....++.++++. .|++| ++..+.. -.+++++.+.. ....-.|+. ||... .+.++..++.....-|...-|
T Consensus 67 i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~-~~~~~~ii~-s~tsg---~~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 67 IRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDG-LCDPDTIFA-TNTSG---LPITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred eEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHH-hCCCCcEEE-ECCCC---CCHHHHHhhcCCcccEEEEcc
Confidence 0012457788876 67766 3432332 35567766643 333333442 44333 234454444433333444556
Q ss_pred CCceec
Q 007499 471 FENVDL 476 (601)
Q Consensus 471 f~pv~~ 476 (601)
|.|...
T Consensus 139 ~~p~~~ 144 (311)
T PRK06130 139 FTPADV 144 (311)
T ss_pred CCCCcc
Confidence 666543
No 98
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.21 E-value=0.87 Score=47.20 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=35.8
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 303 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 303 Agll~Alr~-~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.|++++++. .+..+.. .+++|+|+|.+|-+++..|.. .|. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 346777764 4566666 999999999888777776664 343 479999885
No 99
>PRK05086 malate dehydrogenase; Provisional
Probab=88.06 E-value=2.3 Score=45.20 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=66.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHH
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 399 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~ 399 (601)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+. -++++. +......+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-----PTAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-----CCCceEEE-eCCCCHH
Confidence 38999999 99999998877542 122 146899997522 1110 122211 00000000 0124678
Q ss_pred HHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 400 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+.+++ .|++|=+.+.+ |- ..+++++.|.+ ++.+.+|+-.|||..
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~-~~~~~ivivvsNP~D 122 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAK-TCPKACIGIITNPVN 122 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchH
Confidence 88887 89888666543 21 45689999964 899999999999993
No 100
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.00 E-value=1.6 Score=46.23 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 295 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
.+-.-+|-+|++.=++..+.+++. ++++++|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------- 190 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEG---KDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------- 190 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------
Confidence 355677888999999999998888 999999976 568888888754 23 246666663
Q ss_pred CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 374 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 374 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|-+.+.|+.|++++|+
T Consensus 191 ---------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 ---------------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred ---------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888888 89999999999999999888
No 101
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.78 E-value=0.57 Score=50.15 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=64.4
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccCC-----CHHHHhcccCCcEEEEcCCC
Q 007499 399 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVFASGSP 470 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~---~aE~-----tpeda~~wt~Grai~AsGSP 470 (601)
.++-+.++|+++|..||. +.-..++-..+ .+-+|=|+.=.-||.. +.|+ |.++++++.. . |+..-=
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~--~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lG 176 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARA--THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALG 176 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhc--CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcC
Confidence 345566788999988875 55445555544 2456668877888864 4343 4444444321 1 112122
Q ss_pred CCceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHH
Q 007499 471 FENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 517 (601)
Q Consensus 471 f~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA 517 (601)
..||.. +...||-.=|-..+|-+-=+.-+..---.|.+-+-.|-
T Consensus 177 k~pV~v---~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 177 MRPLHV---RKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred CEeEec---CCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345554 23678888888888877766666665555666555553
No 102
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.61 E-value=1.8 Score=46.16 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-.|++.-++..+.+++. ++++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~--------- 193 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSG---SDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA--------- 193 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC---------
Confidence 34567888899999999998888 999999985 578888888764 23 256777663
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|-+.+.|+.++.++|+
T Consensus 194 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 --------------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347888888 89999999999999999988
No 103
>PRK15076 alpha-galactosidase; Provisional
Probab=87.61 E-value=0.86 Score=50.61 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=74.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC-CCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.|+|||+.| .+..++..+....++. -..|+|+|.+-=..+ ...-+......+ ...+. .....++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l~----~~evvLvDid~er~~~~~~l~~~~~~~~---~~~~~-i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPALR----DAEIALMDIDPERLEESEIVARKLAESL---GASAK-ITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccCC----CCEEEEECCCHHHHHHHHHHHHHHHHhc---CCCeE-EEEECCHHH
Confidence 589999999984 3333433332122332 257999997521100 000011111111 11110 112467888
Q ss_pred HhcccCCcEEEeecCCCCC-------------------------------------CCHHHHHHhhhcCCCCCeEEecCC
Q 007499 401 VVRKVKPHVLLGLSGVGGV-------------------------------------FNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
++++ .|++|=..+++|. .=.++++.|. +++...+|+-.||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~-~~~p~a~iin~tN 148 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDME-EVCPDALLLNYVN 148 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHH-HHCCCeEEEEcCC
Confidence 8887 6877644444321 1146777774 5999999999999
Q ss_pred CCCccCCCHHHHhcccCCcEEEEcC-CCCC
Q 007499 444 PTMNAECTAADAFKHAGENIVFASG-SPFE 472 (601)
Q Consensus 444 Pt~~aE~tpeda~~wt~Grai~AsG-SPf~ 472 (601)
|.. +..+-++.+++.| +|.+| +|+.
T Consensus 149 P~d---ivt~~~~~~~~~r-viG~c~~~~~ 174 (431)
T PRK15076 149 PMA---MNTWAMNRYPGIK-TVGLCHSVQG 174 (431)
T ss_pred hHH---HHHHHHhcCCCCC-EEEECCCHHH
Confidence 995 4555555775555 56777 6654
No 104
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.52 E-value=1.3 Score=47.00 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..+.+++. ++|+|+| .|..|..+|.+|... |. .+.+++++ +
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T-- 192 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T-- 192 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C--
Confidence 3566788888888999988887 9999999 999999999999853 42 46666432 0
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
.+|.|++++ .|++|-+-+.++.+++++++
T Consensus 193 --------------------~~l~e~~~~--ADIVIsavg~~~~v~~~~lk 221 (296)
T PRK14188 193 --------------------RDLPAVCRR--ADILVAAVGRPEMVKGDWIK 221 (296)
T ss_pred --------------------CCHHHHHhc--CCEEEEecCChhhcchheec
Confidence 237888877 79999888888888877633
No 105
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.52 E-value=3.1 Score=47.70 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=96.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc--CCC-CCCChhhhccccccCCCCCcccCCC-
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT--KER-KNLDPAAAPFAKDPGDFMGLREGAS- 397 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~--~~r-~~l~~~k~~fa~~~~~~~~~~~~~~- 397 (601)
--++|+|+|..|+|||.-+.. .|+ ++.||+++-+=. .+| .+|=+.=..|+...+ -+
T Consensus 13 ~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e--------~~l 72 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQYE--------FSL 72 (532)
T ss_pred CCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhcc--------hHH
Confidence 669999999999999988765 476 588999876653 233 234444445543321 12
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC--CCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCcee
Q 007499 398 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS--VKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVD 475 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~--erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~ 475 (601)
..|+++. .+++..+|- |+ +.|.+||..+=
T Consensus 73 vrEal~E-----------------r~vL~~~AP-H~v~p~~~~lp~~~~------------------------------- 103 (532)
T COG0578 73 VREALAE-----------------REVLLRIAP-HLVEPLPFLLPHLPG------------------------------- 103 (532)
T ss_pred HHHHHHH-----------------HHHHHHhCc-cccccCcCeEeccCC-------------------------------
Confidence 4455544 567777753 32 23344443321
Q ss_pred cCCCeeeecccccccccchhhHHHHHHcCC-ccc--CHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHH
Q 007499 476 LGNGKIGHVNQANNMYLFPGIGLGTLLSGA-RFI--TDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAV 552 (601)
Q Consensus 476 ~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a-~~i--td~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aV 552 (601)
.---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++-+..+..||.-..- - .+...+|
T Consensus 104 ----------~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd--d-aRLv~~~ 170 (532)
T COG0578 104 ----------LRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD--D-ARLVAAN 170 (532)
T ss_pred ----------cccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec--h-HHHHHHH
Confidence 00125678999999999993 333 222223356666666666666657888885442 1 3667788
Q ss_pred HHHHHHcC
Q 007499 553 LRAAVEED 560 (601)
Q Consensus 553 a~~A~~~G 560 (601)
++.|.+.|
T Consensus 171 a~~A~~~G 178 (532)
T COG0578 171 ARDAAEHG 178 (532)
T ss_pred HHHHHhcc
Confidence 99999988
No 106
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.48 E-value=1.1 Score=47.56 Aligned_cols=127 Identities=17% Similarity=0.298 Sum_probs=77.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.|+|||..|..+|-+|+. .|+. ..|.|+|.+--..++- .+|.+.. +|-+.. .. ...+. +
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~~-~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGDY-S 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCCH-H
Confidence 699999999999999987764 3542 5799999842111111 1343332 222111 10 12344 4
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEE
Q 007499 401 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 464 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt--~Grai 464 (601)
.+++ .|++|=+.+.+ |- .=+++++.|.+ ++...+|+-.|||.. +...-+++++ .-+=+
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~-~~~~~~vivvsNP~d---~~~~~~~k~sg~p~~~v 143 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMA-SGFDGIFLVASNPVD---ILTYATWKLSGFPKERV 143 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCcHH---HHHHHHHHHhCCCHHHE
Confidence 5777 79888555543 31 11456777754 888899999999994 6677777766 22336
Q ss_pred EEcCCCC
Q 007499 465 FASGSPF 471 (601)
Q Consensus 465 ~AsGSPf 471 (601)
|.+|.--
T Consensus 144 iG~gt~L 150 (315)
T PRK00066 144 IGSGTSL 150 (315)
T ss_pred eecCchH
Confidence 6666444
No 107
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.33 E-value=0.98 Score=38.55 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=59.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
||.|+|+|..|..+++.+... |. ...+|+++ +++. +.+.+.++.|... ....+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~~------~~~~~~~~~~~~~-------~~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRSP------EKAAELAKEYGVQ-------ATADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESSH------HHHHHHHHHCTTE-------EESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCcH------HHHHHHHHhhccc-------cccCChHHh
Confidence 689999999999998888753 43 23578855 6631 1122222222110 012369999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 444 (601)
++. +|++| ++..|. .-+++++.+ ....+..+|.-++||
T Consensus 59 ~~~--advvi-lav~p~-~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 59 AQE--ADVVI-LAVKPQ-QLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH--TSEEE-E-S-GG-GHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hcc--CCEEE-EEECHH-HHHHHHHHH-hhccCCCEEEEeCCC
Confidence 996 88877 554343 446688877 346788898888876
No 108
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.03 E-value=3.6 Score=43.00 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=60.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
+|.|+|.|..|..+|..|... | -++.++|++- . ... .++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~~----~--~~~----~l~~~g~-----~~~~s~~~~~ 54 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHDQ----D--AVK----AMKEDRT-----TGVANLRELS 54 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECCH----H--HHH----HHHHcCC-----cccCCHHHHH
Confidence 689999999999999988653 4 2577777631 1 111 1221110 1124566665
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 403 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 403 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+.. ++|++|=+ ...+ ..+++++.++....+..||+-+||..+
T Consensus 55 ~~~~~~dvIi~~-vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 55 QRLSAPRVVWVM-VPHG-IVDAVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhcCCCCEEEEE-cCch-HHHHHHHHHHhhCCCCCEEEECCCCCc
Confidence 542 47888743 3345 889999888654456789999999764
No 109
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.99 E-value=0.23 Score=46.59 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=67.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-ccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
||.|+|| |..|..+|-+|+.. |+- +.|.|+|.+ ......--+|++..-+.-++. .-..+..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~------~i~~~~~~ 65 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPV------RITSGDYE 65 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEE------EEEESSGG
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhccccc------cccccccc
Confidence 8999999 99999999888763 543 469999997 211110013333322221111 01124566
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007499 401 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 457 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~ 457 (601)
.+++ .|++|=+.+.+ |- +-+++.+.+++ ++...+++-.|||.. ...+-+++
T Consensus 66 ~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~-~~p~~~vivvtNPvd---~~t~~~~~ 130 (141)
T PF00056_consen 66 ALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAK-YAPDAIVIVVTNPVD---VMTYVAQK 130 (141)
T ss_dssp GGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHH-HSTTSEEEE-SSSHH---HHHHHHHH
T ss_pred cccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHH-hCCccEEEEeCCcHH---HHHHHHHH
Confidence 6776 78888444432 21 22355666644 789999999999974 55555554
No 110
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.95 E-value=1.8 Score=44.49 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=57.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCC--CCCcccCCCHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMGLREGASLLE 400 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~--~~~~~~~~~L~e 400 (601)
||.|+|+|+.|..+|..|.++ | .+++++++ +--.+ .+.......-....+ .. .....++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 64 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAK---ALRERGLVIRSDHGDAVVP-GPVITDPEE 64 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHH---HHHhCCeEEEeCCCeEEec-ceeecCHHH
Confidence 799999999999999888753 3 35888887 21100 010000000000000 00 001234566
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+++. +|++|=+. +....+++++.++....+..+|+.+.|.-.
T Consensus 65 ~~~~--~d~vilav--k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 65 LTGP--FDLVILAV--KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ccCC--CCEEEEEe--cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 5544 67665333 223468999988654456678888999864
No 111
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=86.83 E-value=1.7 Score=41.20 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=50.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhh--ccccccCCCC-CcccCCCHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDFM-GLREGASLL 399 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~--~fa~~~~~~~-~~~~~~~L~ 399 (601)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... .... ...-..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~---~i~~~~~n~~~~~~-~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE---EINETRQNPKYLPG-IKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH---HHHHHTSETTTSTT-SBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH---HHHHhCCCCCCCCC-cccCcccccccCHH
Confidence 689999999999999888763 3 36777777631111 1111111 11110 0000 011246799
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007499 400 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 430 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 430 (601)
+++++ .|++| +. .|--+-+++++.++.
T Consensus 65 ~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 65 EALED--ADIII-IA-VPSQAHREVLEQLAP 91 (157)
T ss_dssp HHHTT---SEEE-E--S-GGGHHHHHHHHTT
T ss_pred HHhCc--ccEEE-ec-ccHHHHHHHHHHHhh
Confidence 99987 67765 33 244566899999964
No 112
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.77 E-value=4.1 Score=43.77 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=64.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEecCccccCCCC-CCC---hhhhccccccCCCCC--c
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERK-NLD---PAAAPFAKDPGDFMG--L 392 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~---~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~---~~k~~fa~~~~~~~~--~ 392 (601)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.||+|.+...+. ++. ++++.+... ..+.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~-~~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKL-SNWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCch-hhcccccc
Confidence 689999999999999999987 2332345431 22456799998876542 222 222222211 01100 0
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 393 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 393 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
....++.|.++...+||+|-+++ +....+-+.+.+. +..++|.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~-~~~a~~~~~~al~---~G~~VVt 120 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN-DKNAHEWHLEALK---EGKSVVT 120 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC-cHHHHHHHHHHHh---hCCcEEE
Confidence 01137889998778999999985 3333333344442 4678875
No 113
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.67 E-value=2 Score=45.57 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 295 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
.+-.-+|-+|++.=++..+.+++. .+++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~-------ATVtichs~-------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTG---KNVVIIGRSNIVGKPLSALLLK-----EN-------CSVTICHSK-------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------
Confidence 445677888899999999998888 999999975 578888888764 23 246666653
Q ss_pred CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 374 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 374 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.+++++|+.
T Consensus 193 ---------------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 193 ---------------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred ---------------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcCC
Confidence 1348888888 899999999999999999883
No 114
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=86.59 E-value=2 Score=45.78 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-+|++.=++..|.+++. ++++|+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~--------- 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKG---KKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR--------- 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC---------
Confidence 34567788899999999998888 999999986 567778877754 23 257777663
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.++.|+.|+|+.
T Consensus 201 --------------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 --------------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred --------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888888 899999999999999999984
No 115
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.58 E-value=2.1 Score=45.43 Aligned_cols=87 Identities=16% Similarity=0.320 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.-++..|.+++. ++++++|.+ ..|.-+|.||.... .| ..+.+|.|+
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~~~---~~-------atVtvchs~---------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAG---AHVVVIGRGVTVGRPIGLLLTRRS---EN-------ATVTLCHTG---------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHhhcc---CC-------CEEEEeCCC----------
Confidence 3567888899999999998888 999999975 67888888886410 12 246666553
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.+++++|+.
T Consensus 194 -------------------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 -------------------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred -------------------CCCHHHHHHh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888988 899999999999999999883
No 116
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.55 E-value=2.1 Score=45.28 Aligned_cols=86 Identities=14% Similarity=0.286 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-.|++.=++..+.+++. ++++++|.+ ..|.-+|.||.. .| ..+.++.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~--------- 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAG---KRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK--------- 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC---------
Confidence 34567888899999999998888 999999975 578888888764 23 246666543
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.|+.++|+.
T Consensus 190 --------------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 --------------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1348888888 899999999999999998883
No 117
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.47 E-value=2.2 Score=41.33 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred hCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCC
Q 007499 312 QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG 391 (601)
Q Consensus 312 ~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~ 391 (601)
.+..+.. ++|.|+|.|..|..+|+++....+ +|+.+|+..- +.. .+....
T Consensus 30 ~~~~l~g---~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~---------~~~-~~~~~~----- 79 (178)
T PF02826_consen 30 PGRELRG---KTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPK---------PEE-GADEFG----- 79 (178)
T ss_dssp TBS-STT---SEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCH---------HHH-HHHHTT-----
T ss_pred CccccCC---CEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCC---------hhh-hccccc-----
Confidence 3444555 999999999999999999986543 7999998532 111 111110
Q ss_pred cccCCCHHHHhcccCCcEEEee-c---CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007499 392 LREGASLLEVVRKVKPHVLLGL-S---GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 466 (601)
Q Consensus 392 ~~~~~~L~e~V~~vkptvLIG~-S---~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~A 466 (601)
....+|.|+++. .|+++=. . ..-+.|+++.++.|. +.-++.-.|.-.---|..--+|++ +|+.--|
T Consensus 80 -~~~~~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk----~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga 149 (178)
T PF02826_consen 80 -VEYVSLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK----PGAVLVNVARGELVDEDALLDALE--SGKIAGA 149 (178)
T ss_dssp -EEESSHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST----TTEEEEESSSGGGB-HHHHHHHHH--TTSEEEE
T ss_pred -ceeeehhhhcch--hhhhhhhhccccccceeeeeeeeeccc----cceEEEeccchhhhhhhHHHHHHh--hccCceE
Confidence 023579999988 7888743 2 124899999999994 466777666544322222223333 5665533
No 118
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.18 E-value=2.2 Score=45.50 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-.|++.=++..|.+++. ++++|+|.+ ..|.-+|.||.. .|+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC---------
Confidence 44567788899999999998888 999999975 567788877764 2210 01246665543
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.++.++|+.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888888 899999999999999999983
No 119
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.17 E-value=0.75 Score=51.38 Aligned_cols=128 Identities=23% Similarity=0.321 Sum_probs=80.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC-CChhhhccccc-cCCCCCcccCCC
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKD-PGDFMGLREGAS 397 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fa~~-~~~~~~~~~~~~ 397 (601)
...||+|+||||. ...+++...+.+.+.++. +.|||+|-+ .+|.+ .-..-+.+.+. ..++. .....+
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~k-v~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVK-VEATTD 70 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEecC
Confidence 3489999999998 567888887776677775 689999974 33321 11111222222 11111 123468
Q ss_pred HHHHhcccCCcEEE---------------------ee-----cCCCCCCC--------HHHHHHhhhcCCCCCeEEecCC
Q 007499 398 LLEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 398 L~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~Ma~~~~erPIIFaLSN 443 (601)
+.+|++. +|-+| |+ .+.+|.|. -|+++.| ++.|+.--++=.+|
T Consensus 71 ~~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~lNytN 147 (442)
T COG1486 71 RREALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWMLNYTN 147 (442)
T ss_pred HHHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEEeccC
Confidence 9999988 56655 11 22233332 4889999 56999999999999
Q ss_pred CCCccCCCHHHHhcccCC-cEE
Q 007499 444 PTMNAECTAADAFKHAGE-NIV 464 (601)
Q Consensus 444 Pt~~aE~tpeda~~wt~G-rai 464 (601)
|-. ++| +-+++|+.+ |.|
T Consensus 148 P~~--~vT-eAv~r~~~~~K~V 166 (442)
T COG1486 148 PAA--IVT-EAVRRLYPKIKIV 166 (442)
T ss_pred hHH--HHH-HHHHHhCCCCcEE
Confidence 986 444 455666654 444
No 120
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.15 E-value=13 Score=37.67 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=68.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.+|.|+|+|..|..+|..+... |.. ..+++++|++. +.....+..| .- .-..+..++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~----~~~v~v~~r~~------~~~~~~~~~~---g~-----~~~~~~~~~ 59 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVP----AKDIIVSDPSP------EKRAALAEEY---GV-----RAATDNQEA 59 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCC----cceEEEEcCCH------HHHHHHHHhc---CC-----eecCChHHH
Confidence 5799999999999998887653 321 24688887641 1111111111 00 012456777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceec
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 476 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~ 476 (601)
++. +|++| ++. +....+++++.+.. +. ..+|..++|-++. ++.-+|....+=++..-|..|..+
T Consensus 60 ~~~--advVi-l~v-~~~~~~~v~~~l~~-~~-~~~vvs~~~gi~~-----~~l~~~~~~~~~iv~~~P~~p~~~ 123 (267)
T PRK11880 60 AQE--ADVVV-LAV-KPQVMEEVLSELKG-QL-DKLVVSIAAGVTL-----ARLERLLGADLPVVRAMPNTPALV 123 (267)
T ss_pred Hhc--CCEEE-EEc-CHHHHHHHHHHHHh-hc-CCEEEEecCCCCH-----HHHHHhcCCCCcEEEecCCchHHH
Confidence 765 67766 443 34456788888853 33 3588999997763 333344431122233456666554
No 121
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.06 E-value=2.1 Score=44.93 Aligned_cols=127 Identities=20% Similarity=0.330 Sum_probs=75.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
||.|+|+|.+|..+|..++. .|+. ..|+++|++-=..++- .+|.+... +...... ....+.. .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~~-~~~~~~~----i~~~~~~-~ 65 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDALA-FLPSPVK----IKAGDYS-D 65 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHhh-ccCCCeE----EEcCCHH-H
Confidence 79999999999999988754 3442 4799999852211111 12322211 1111000 0112343 4
Q ss_pred hcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcEEE
Q 007499 402 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 465 (601)
Q Consensus 402 V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--Grai~ 465 (601)
+++ .|++|=+.+.+ |- .=+++.+.|. +++..-+|+-.|||.. +...-++++++ -+-+|
T Consensus 66 l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~-~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~ 139 (306)
T cd05291 66 CKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIK-ASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVI 139 (306)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEe
Confidence 555 89999777654 21 1156677775 4889999999999995 66777766542 12367
Q ss_pred EcCCCC
Q 007499 466 ASGSPF 471 (601)
Q Consensus 466 AsGSPf 471 (601)
.+|.-.
T Consensus 140 g~gt~L 145 (306)
T cd05291 140 GTGTSL 145 (306)
T ss_pred eccchH
Confidence 777553
No 122
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.02 E-value=2.7 Score=43.87 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=56.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
||.|+|.|..|..+|..|... | -+++++|+..- ....++.... ....++.|++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~~----------~~~~~~~~g~-----~~~~~~~e~~ 54 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNPE----------AVEALAEEGA-----TGADSLEELV 54 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCHH----------HHHHHHHCCC-----eecCCHHHHH
Confidence 799999999999999998753 4 25777887421 1112221110 1134677777
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 403 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 403 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+.. +|+++|=+- ..+...++++..+.....+..||+-+|+-.+
T Consensus 55 ~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 55 AKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred hhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 765 366655332 2344556666555433445678888876443
No 123
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.60 E-value=1.3 Score=46.19 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=40.7
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+.=||-|..| ++.+++..+.. .. .+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~~G--------f~~~L~~~~~~-~~---~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYIA--------IAKLLASYQVP-PD---LVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHHH--------HHHHHHhcCCC-CC---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 5556667554 77778766654 24 699999999999888777654 344 579999984
No 124
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=85.58 E-value=4.4 Score=44.72 Aligned_cols=186 Identities=10% Similarity=0.077 Sum_probs=96.0
Q ss_pred ccCChhhHHHHHhcCCCCCeeEE-EEecCccccccCCCCCccccccchhhhHH-----HhhcCCCCCce-ecEEeeccCC
Q 007499 153 SAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQRI-LPVMLDVGTN 225 (601)
Q Consensus 153 s~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY-----~a~gGI~P~~~-lPV~LDvGTn 225 (601)
+..|-..+.++|+.. .+++. +++| +.+..+--.+.+-.-+..+....| ... |+..-.. +|+=++
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~L~~~-GiP~~~~~~P~G~~---- 246 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARALRER-GAKVLTAPFPLGPE---- 246 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHHHHHc-CCccccCCCCcChH----
Confidence 345556788888864 46664 7787 556655555433222222222111 444 6653222 333222
Q ss_pred chhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeEEeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHH
Q 007499 226 NQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGL 305 (601)
Q Consensus 226 N~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgl 305 (601)
-.|+|++++.+.+.. ..+.+-+.+++.| +-+
T Consensus 247 -------------------------~T~~~L~~la~~~g~------~~~~~~~~~~~er------------------~~~ 277 (427)
T PRK02842 247 -------------------------GTRAWLEAAAAAFGI------DPDGLEEREAPAW------------------ERA 277 (427)
T ss_pred -------------------------HHHHHHHHHHHHhCc------CHhHHHHHHHHHH------------------HHH
Confidence 267888888776631 1111223333333 224
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc
Q 007499 306 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 385 (601)
Q Consensus 306 l~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~ 385 (601)
..++....+.+.. .|++|+|.+.-.+++++.|.+ +.|+. +..+-+. ...++.+.+.-+.+..+
T Consensus 278 ~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~e----elGm~-------~v~v~t~---~~~~~~~~~~~~~l~~~ 340 (427)
T PRK02842 278 RKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSR----ECGME-------LVEVGTP---YLNRRFLAAELALLPDG 340 (427)
T ss_pred HHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHH----hCCCE-------EEEeCCC---CCCHHHHHHHHHhccCC
Confidence 4555556666667 999999998889999999876 24653 2222211 01111111111112111
Q ss_pred cCCCCCcccCCCHHHHhcccCCcEEEeec
Q 007499 386 PGDFMGLREGASLLEVVRKVKPHVLLGLS 414 (601)
Q Consensus 386 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S 414 (601)
. ......+...+++.|+..|||.|||-|
T Consensus 341 ~-~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 V-RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred C-EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 0 000001223468899999999999976
No 125
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.58 E-value=2.6 Score=44.66 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=68.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCC
Q 007499 295 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 373 (601)
Q Consensus 295 QGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 373 (601)
.+-.-+|-.|++.=++..|.+++. .+++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~G---k~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~-------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEG---AYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF-------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC--------
Confidence 445677889999999999999888 999999975 578888888864 23 246666653
Q ss_pred CCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 374 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 374 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|-+.+.|+.|++++|+
T Consensus 192 ---------------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ---------------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ---------------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1347777877 89999999999999999888
No 126
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.54 E-value=2.6 Score=44.61 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 298 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 298 aav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.-+|-.|++.=++..+.+++. ++++|+|-+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~----------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKG---KRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR----------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 466788899999999998877 999999976 567788877754 22 246666442
Q ss_pred hhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 377 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 377 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-..+.++.+++++|+.
T Consensus 191 ------------------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 ------------------TADLAGEVGR--ADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1347888888 899999999999999999883
No 127
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.41 E-value=2.9 Score=43.72 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=56.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
+|.|+|.|..|..+|..+... |. +++++|++. + ... .++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~--~~~----~~~~~g~-----~~~~s~~~~~ 54 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----E--AVD----VAGKLGI-----TARHSLEELV 54 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----H--HHH----HHHHCCC-----eecCCHHHHH
Confidence 689999999999999988653 42 577778741 1 111 1211110 1235678887
Q ss_pred cccC-CcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 403 RKVK-PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 403 ~~vk-ptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+..+ ++++|=+- ......++++..+.....+..+|.=+|+-.+
T Consensus 55 ~~~~~advVi~~v-p~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 55 SKLEAPRTIWVMV-PAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HhCCCCCEEEEEe-cCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 7643 56665322 2333556666665433445678888877444
No 128
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.33 E-value=2.6 Score=44.74 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..+.+++. .+++++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~---------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAG---KEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK---------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC----------
Confidence 3466888899999999998888 999999975 678888888864 23 246666553
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 426 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 426 (601)
..+|.+.+++ +|++|-+.+.|+.+++++|+
T Consensus 189 -------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -------------------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1348888888 89999999999999999988
No 129
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.98 E-value=2.4 Score=45.01 Aligned_cols=90 Identities=18% Similarity=0.327 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+-.-+|-.|++.=++..|.+++. ++++|+|-+ ..|.-+|.||... |-.. . ..+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~--------- 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ--------- 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC---------
Confidence 44567888899999999998888 999999975 5688888887642 1100 0 245555442
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.+++|+|+.
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 --------------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 899999999999999999983
No 130
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=84.87 E-value=0.38 Score=54.03 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.3
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~ 342 (601)
+.||||+|||.||++.|.-|++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred CceEEEECCchHHHHHHHHHHH
Confidence 3899999999999999999984
No 131
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=84.82 E-value=1.5 Score=48.36 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=71.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhcccccc-CCCCCcccCCCHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP-GDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~-~~~~~~~~~~~L~e~ 401 (601)
||.|+|||+.|.+.+- +..+..... .+-..++|+|.+-=..+ .+...-+.++... ..+. .....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~e~l~---~~~~~~~~~~~~~~~~~~-I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDEERLE---TVEILAKKIVEELGAPLK-IEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCHHHHH---HHHHHHHHHHHhcCCCeE-EEEeCCHHHH
Confidence 7999999998887653 111210111 12247999997521111 0100001111110 0000 1124678999
Q ss_pred hcccCCcEEEeecCCC---------------CCCC---------------------HHHHHHhhhcCCCCCeEEecCCCC
Q 007499 402 VRKVKPHVLLGLSGVG---------------GVFN---------------------EEVLKAMRESDSVKPAIFAMSNPT 445 (601)
Q Consensus 402 V~~vkptvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~~erPIIFaLSNPt 445 (601)
+++ .|++|=+-..+ |+|. .++.+.|. +++++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~-~~~p~a~~i~~tNPv 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIE-ELCPDAWLLNYANPM 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHH-HHCCCCEEEEcCChH
Confidence 987 78777433211 1221 26666664 378899999999999
Q ss_pred CccCCCHHHHhcccCCcEEEEcC-CCC
Q 007499 446 MNAECTAADAFKHAGENIVFASG-SPF 471 (601)
Q Consensus 446 ~~aE~tpeda~~wt~Grai~AsG-SPf 471 (601)
. +..+-+++.++ .-++.+| +|+
T Consensus 149 ~---i~t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 149 A---ELTWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred H---HHHHHHHHhCC-CCEEEECCcHH
Confidence 6 56666677776 3456766 443
No 132
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.50 E-value=0.85 Score=45.81 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=31.8
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+. .+|+++|+|..|..||..|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~---~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKK---AKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhC---CCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 34556 9999999999999999999764 54 689999997
No 133
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.13 E-value=2.9 Score=44.55 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 298 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 298 aav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.-+|-.|++.=++..+.+++. ++++|+|.+ .-|.-+|.||..... ..+ ..+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~----------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR----------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC-----------
Confidence 456888899999999998888 999999985 568888888764211 001 235555442
Q ss_pred hhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 377 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 377 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.++.++|+.
T Consensus 195 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 195 ------------------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 899999999999999999883
No 134
>PRK08223 hypothetical protein; Validated
Probab=84.04 E-value=0.55 Score=49.73 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 007499 277 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 356 (601)
Q Consensus 277 f~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~ 356 (601)
|..-++|..++..|..+-| .+|++ .||+|+|+|..|.-+|..|+.+.+
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 6666777766655554433 45556 999999999999999999887655
Q ss_pred CeEEEEecCc
Q 007499 357 NKFFLLDKDG 366 (601)
Q Consensus 357 ~~i~lvD~~G 366 (601)
.+|.++|.+=
T Consensus 52 G~i~lvD~D~ 61 (287)
T PRK08223 52 GKFTIADFDV 61 (287)
T ss_pred CeEEEEeCCC
Confidence 6899999973
No 135
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.82 E-value=0.98 Score=44.83 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++|.+ .||+++|+|..|.-+|..|+.+ |. ++|+++|.+
T Consensus 17 ~kl~~---~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLN---SHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcC---CCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 34556 9999999999999999888765 44 689999997
No 136
>PRK06436 glycerate dehydrogenase; Provisional
Probab=83.73 E-value=8 Score=41.13 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=69.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCC
Q 007499 318 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 318 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
+|.++++.|+|-|..|..+|+++... |+ +++.+|+... . .. +.. ...+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~~~--~--~~--------~~~--------~~~~ 166 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRSYV--N--DG--------ISS--------IYME 166 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCCc--c--cC--------ccc--------ccCC
Confidence 45669999999999999999866543 43 6888887511 0 00 000 1246
Q ss_pred HHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007499 398 LLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 466 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~A 466 (601)
|.|++++ .|+++=+- ..-+.|+++.+..|. +..++.=.|.=..--|-.-.+|++ +|+...|
T Consensus 167 l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk----~ga~lIN~sRG~~vd~~aL~~aL~--~g~i~~a 231 (303)
T PRK06436 167 PEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR----KGLAIINVARADVVDKNDMLNFLR--NHNDKYY 231 (303)
T ss_pred HHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCceEE
Confidence 9999877 78877321 124789999999994 577888888754422333334443 5554433
No 137
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=83.71 E-value=3.1 Score=45.56 Aligned_cols=85 Identities=11% Similarity=0.218 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..+.+++- +++||+|-+ -.|.-+|.||.. .| ..+.+|.|+
T Consensus 210 f~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~---------- 264 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR---------- 264 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC----------
Confidence 4466778889999999998888 999999975 567788877764 22 246666543
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-..+.|+.++.++||.
T Consensus 265 -------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 -------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcCC
Confidence 1358888888 899999999999999999983
No 138
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.61 E-value=0.99 Score=45.43 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCccc
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 394 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~ 394 (601)
+|.+ .||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= +.. .+|+.+- .|..++ . +...
T Consensus 18 ~L~~---~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~--sNL~Rq~-l~~~~d--i-G~~K 76 (228)
T cd00757 18 KLKN---ARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VEL--SNLQRQI-LHTEAD--V-GQPK 76 (228)
T ss_pred HHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcC--ccccccc-ccChhh--C-CChH
Confidence 4555 9999999999999999999765 44 6899999972 222 2344321 121111 0 1011
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 395 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 395 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
...+.+.++...|++=|=.. ..-++++-+...-+ .-.=||-++-||..
T Consensus 77 a~~~~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~--~~DvVi~~~d~~~~ 124 (228)
T cd00757 77 AEAAAERLRAINPDVEIEAY--NERLDAENAEELIA--GYDLVLDCTDNFAT 124 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEe--cceeCHHHHHHHHh--CCCEEEEcCCCHHH
Confidence 23466677777776543222 23345544443322 11223335566644
No 139
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.55 E-value=4 Score=46.35 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=29.5
Q ss_pred ecccccccccchhhHHHHHHcCCcccCHHHHHHHHH
Q 007499 483 HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 518 (601)
Q Consensus 483 ~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~ 518 (601)
.||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 478899999999999898888877788887777654
No 140
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=83.43 E-value=8.2 Score=41.51 Aligned_cols=98 Identities=29% Similarity=0.307 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007499 298 AGVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 359 (601)
Q Consensus 298 aav~LAgll~Alr------------------~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 359 (601)
|=-+++.+|+..| ..|..|.. +++.|+|.|..|..+|+.+....+ ++
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g---kTvGIiG~G~IG~~va~~l~afgm------------~v 168 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG---KTVGIIGLGRIGRAVAKRLKAFGM------------KV 168 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC---CEEEEECCCHHHHHHHHHHHhCCC------------eE
Confidence 3446777777777 33444445 999999999999999999887644 68
Q ss_pred EEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHh
Q 007499 360 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAM 428 (601)
Q Consensus 360 ~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M 428 (601)
..+|+. ..+ ....+ + +.....+|.++++. .|+|.-.- ..-|.++++-+..|
T Consensus 169 ~~~d~~----~~~-----~~~~~--~-----~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 169 IGYDPY----SPR-----ERAGV--D-----GVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred EEECCC----Cch-----hhhcc--c-----cceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 888883 111 00000 0 00123579999988 89988542 12488999999999
No 141
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.37 E-value=6.4 Score=42.20 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=74.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc--ccCC-CCCCChhhhccccccCCCCCcccCCCH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 398 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L 398 (601)
||.|+|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++ .-+|.+...++.+.. . -..+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 7999999 9999999887664 34432222346999998742 1111 124554443443221 1 12457
Q ss_pred HHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCccCCCHHHHhccc
Q 007499 399 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHA 459 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-~erPIIFaLSNPt~~aE~tpeda~~wt 459 (601)
.+++++ .|++|=+.+.+ |- .-+++++.|.+ + ++.-||+-.|||.. +...-+++++
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~s 140 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK-VAKPTVKVLVVGNPAN---TNALIALKNA 140 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHH-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 788888 78877554443 31 12567777754 7 48999999999984 6666677654
No 142
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.34 E-value=1 Score=48.43 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=32.9
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
++|++ .||+|+|+|..|..+|+.|+.+.+ .+|.++|.+=
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDY 58 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCc
Confidence 45566 999999999999999999987644 6899999983
No 143
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.33 E-value=1 Score=46.09 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=59.7
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 393 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~ 393 (601)
++|++ .||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|+.+ ..|... +. +..
T Consensus 20 ~~L~~---~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~--sNL~RQ-~l~~~~--di-G~~ 78 (240)
T TIGR02355 20 EALKA---SRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL--SNLQRQ-VLHSDA--NI-GQP 78 (240)
T ss_pred HHHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc--cCcccc-eeeeHh--hC-CCc
Confidence 34556 9999999999999999999765 44 68999999722 21 244432 112111 10 101
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCC
Q 007499 394 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTM 446 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF-aLSNPt~ 446 (601)
....+.+.++...|++-|-.- ...++++-+...-+ +--+|+ +.-||..
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~--~~~i~~~~~~~~~~---~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPI--NAKLDDAELAALIA---EHDIVVDCTDNVEV 127 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEE--eccCCHHHHHHHhh---cCCEEEEcCCCHHH
Confidence 112356666666677665433 33455544433311 233444 5566654
No 144
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=83.16 E-value=1.9 Score=48.05 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=76.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEecCccccCCCC-CCChhhhccccc-cCCCCCcccCCCH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 398 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~-~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fa~~-~~~~~~~~~~~~L 398 (601)
.||+|+||||+ -+..|+..+... ..++ -+.|+|+|-+. +|- -+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~-v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIK-FVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeE-EEEECCH
Confidence 38999999996 555555555523 2344 26899999863 221 111111222221 11211 1234679
Q ss_pred HHHhcccCCcEEE---------------------eec-----CCCCC--------CCHHHHHHhhhcCCCCCeEEecCCC
Q 007499 399 LEVVRKVKPHVLL---------------------GLS-----GVGGV--------FNEEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 399 ~e~V~~vkptvLI---------------------G~S-----~~~g~--------Ft~evv~~Ma~~~~erPIIFaLSNP 444 (601)
.||++. +|.+| |+- +.+|. .-.++++.|. ++|...+++-.|||
T Consensus 69 ~eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~-~~~pda~lin~tNP 145 (437)
T cd05298 69 EEAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIE-KYSPDAWILNYSNP 145 (437)
T ss_pred HHHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEEecCc
Confidence 999988 67766 221 22232 2257788885 59999999999999
Q ss_pred CCccCCCHHHHhc-ccCCcEEEEcCCCCC
Q 007499 445 TMNAECTAADAFK-HAGENIVFASGSPFE 472 (601)
Q Consensus 445 t~~aE~tpeda~~-wt~Grai~AsGSPf~ 472 (601)
.. .+| +-+++ ++.-|+|=-+-+|+.
T Consensus 146 ~~--~vt-~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 146 AA--IVA-EALRRLFPNARILNICDMPIA 171 (437)
T ss_pred HH--HHH-HHHHHHCCCCCEEEECCcHHH
Confidence 96 333 33333 345566655656654
No 145
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=83.14 E-value=7.5 Score=35.63 Aligned_cols=98 Identities=14% Similarity=0.231 Sum_probs=49.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||+++|+ |-.|-.|++.+.+ +.|+ +=...+|++.--..+. ++.+ ++.-.+ .+.+-..+|.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~----~~~~------~lv~~v~~~~~~~~g~-d~g~----~~~~~~--~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE----SPGF------ELVGAVDRKPSAKVGK-DVGE----LAGIGP--LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH----STTE------EEEEEEETTTSTTTTS-BCHH----HCTSST---SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHh----cCCc------EEEEEEecCCcccccc-hhhh----hhCcCC--cccccchhHHH
Confidence 38999999 9999999988876 2443 2366788875111111 1111 111000 00112356777
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
+++. +||+|=.|.. ... .+.++...+ +..|+|..=+
T Consensus 64 ~~~~--~DVvIDfT~p-~~~-~~~~~~~~~--~g~~~ViGTT 99 (124)
T PF01113_consen 64 LLEE--ADVVIDFTNP-DAV-YDNLEYALK--HGVPLVIGTT 99 (124)
T ss_dssp HTTH---SEEEEES-H-HHH-HHHHHHHHH--HT-EEEEE-S
T ss_pred hccc--CCEEEEcCCh-HHh-HHHHHHHHh--CCCCEEEECC
Confidence 7777 7888877742 221 334444332 3556665433
No 146
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.12 E-value=3.7 Score=43.82 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..|.+++. ++++|+|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~-------atVtv~hs~---------- 191 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----AN-------ATVTIAHSR---------- 191 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC----------
Confidence 3457888899999999998888 999999975 578888888764 23 245556442
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.|+.++|+.
T Consensus 192 -------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 -------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 899999999999999999883
No 147
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.12 E-value=0.56 Score=53.14 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 358 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 358 (601)
-+|+|+|||-||+..|++|.+++. .+..-|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 689999999999999999998755 2444455554
No 148
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.87 E-value=19 Score=37.17 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+||.|+|+|..|.+||..+.. .|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~-----~g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV-----AGY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH-----CCC-------ceEEEeCC
Confidence 589999999999999998864 343 68888854
No 149
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.86 E-value=11 Score=40.59 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007499 296 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 359 (601)
Q Consensus 296 GTaav~LAgll~Alr~~---------g-----~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 359 (601)
.+|=-+++-+|+.+|-. | . .-.+|.+.+|.|+|.|..|..+|+.+... |+ ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 45555677777777632 1 0 01355669999999999999999988653 43 68
Q ss_pred EEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEee-cCCC---CCCCHHHHHHhhhcCCCC
Q 007499 360 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-SGVG---GVFNEEVLKAMRESDSVK 435 (601)
Q Consensus 360 ~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S~~~---g~Ft~evv~~Ma~~~~er 435 (601)
+.+|+.. . ....+.+ ...+|.|+++. .|+++=+ ...+ +.|.++++..|. +.
T Consensus 173 ~~~d~~~----~------~~~~~~~---------~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk----~g 227 (330)
T PRK12480 173 TAYDAYP----N------KDLDFLT---------YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK----KG 227 (330)
T ss_pred EEEeCCh----h------Hhhhhhh---------ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC----CC
Confidence 8888741 0 0001111 12468999887 7876632 2222 678888888883 46
Q ss_pred CeEEecCCC
Q 007499 436 PAIFAMSNP 444 (601)
Q Consensus 436 PIIFaLSNP 444 (601)
.++.-.|.=
T Consensus 228 avlIN~aRG 236 (330)
T PRK12480 228 AILVNAARG 236 (330)
T ss_pred cEEEEcCCc
Confidence 677766653
No 150
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.68 E-value=3.8 Score=43.64 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..+.+++. +++|++|.+ ..|.-+|.||.. .|.+. -..+.+|.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~---------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSG---KKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR---------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC----------
Confidence 3466788889999999998888 999999986 567788877754 22110 0134455443
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.+++++|+.
T Consensus 195 -------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 -------------------SKNLKKECLE--ADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888887 899999999999999998883
No 151
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.56 E-value=9.7 Score=40.44 Aligned_cols=138 Identities=18% Similarity=0.241 Sum_probs=86.3
Q ss_pred ccCCccccC---cchhHHHHHHHHHHHHHHh---------C------------CCCCCCCCceEEEeCcchHHHHHHHHH
Q 007499 285 KRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------G------------LSLTDFADQKIVVVGAGSAGLGVLKMA 340 (601)
Q Consensus 285 ~~~~~FnDD---iQGTaav~LAgll~Alr~~---------g------------~~l~dl~~~riv~~GAGsAg~GiA~ll 340 (601)
..+.+.|-- -..+|=-+++-+|+..|-. | .+..+|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 345555532 1345666777788777632 1 012356679999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEee----cCC
Q 007499 341 VQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGV 416 (601)
Q Consensus 341 ~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~ 416 (601)
... |+ +|+.+|+.+- .. ...| ...+|.|+++. .|+++=. ...
T Consensus 165 ~~f-----gm-------~V~~~d~~~~---~~------~~~~-----------~~~~l~ell~~--sDvv~lh~Plt~~T 210 (311)
T PRK08410 165 QAF-----GA-------KVVYYSTSGK---NK------NEEY-----------ERVSLEELLKT--SDIISIHAPLNEKT 210 (311)
T ss_pred hhc-----CC-------EEEEECCCcc---cc------ccCc-----------eeecHHHHhhc--CCEEEEeCCCCchh
Confidence 654 33 6888888421 00 0001 12479999988 7887632 222
Q ss_pred CCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc--ccCCcEE
Q 007499 417 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK--HAGENIV 464 (601)
Q Consensus 417 ~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~--wt~Grai 464 (601)
-+.|+++.++.|. +..++.=.|.= ++-=|+|+- -.+|+.-
T Consensus 211 ~~li~~~~~~~Mk----~~a~lIN~aRG----~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLK----DGAILINVGRG----GIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCC----CCeEEEECCCc----cccCHHHHHHHHHcCCeE
Confidence 4899999999993 56777766653 344443332 1357654
No 152
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.52 E-value=7.8 Score=41.44 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=65.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
||.|+|| |..|..+|-+|.. .|+. ..+.|+|.+ +..-.--||.+.. .+.+ ..+.....++.+.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~a~g~alDL~~~~-~~~~----i~~~~~~~~~y~~ 65 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-NTPGVAADLSHIN-TPAK----VTGYLGPEELKKA 65 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-ccceeehHhHhCC-Ccce----EEEecCCCchHHh
Confidence 7999999 9999999887643 4552 579999998 3221113555443 1111 1000011346778
Q ss_pred hcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 402 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 402 V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+++ .|++|=+.+.| |- .-+++++.+. +++...+|+-.|||..
T Consensus 66 ~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~-~~~p~a~vivvtNPvD 121 (310)
T cd01337 66 LKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVA-KACPKALILIISNPVN 121 (310)
T ss_pred cCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEccCchh
Confidence 888 78877555543 32 1245666664 3899999999999984
No 153
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.43 E-value=2.9 Score=43.31 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=57.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChh--hhccccccCCCC-CcccCCCHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA--AAPFAKDPGDFM-GLREGASLL 399 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~--k~~fa~~~~~~~-~~~~~~~L~ 399 (601)
||.|+|+|..|..+|..|... | ..++++|+..-..+ .+... ...+... ..+. +.....++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA---EINADRENPRYLPG-IKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH---HHHHcCcccccCCC-CcCCCCeEEeCCHH
Confidence 799999999999999988753 3 25778887531110 00000 0000000 0000 001124677
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 400 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
++++. +|++| ++.. ....+++++.+.....+..+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~-~~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVP-SQALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCC-HHHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 78776 67766 3322 23568888877542345668888887544
No 154
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.40 E-value=7.1 Score=41.59 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=62.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc-cCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~-~~~~~~~~~~~~L~e 400 (601)
.+++|+|+|..|..++..+... .++ ++|+++++. ..+ .......+.+. .-++ ....++.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~--a~~~a~~~~~~~g~~v---~~~~~~~~ 190 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK--AEALALQLSSLLGIDV---TAATDPRA 190 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH--HHHHHHHHHhhcCceE---EEeCCHHH
Confidence 6899999999998888777542 233 578888873 111 11111111111 0000 12367999
Q ss_pred HhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007499 401 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 455 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~tpeda 455 (601)
+++. .|++|-+++. .-.|+.++++.- -.|.++.--++ +.|+.++-.
T Consensus 191 av~~--aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 191 AMSG--ADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred Hhcc--CCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCceecCHHHH
Confidence 9986 8999977643 245777776642 24445543232 358888663
No 155
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.83 E-value=4.1 Score=44.33 Aligned_cols=85 Identities=14% Similarity=0.233 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCC
Q 007499 297 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 375 (601)
Q Consensus 297 Taav~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 375 (601)
-.-+|-.|++.=++..|.+++. +++||+|-+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 193 ~~PCTp~avi~LL~~~~i~l~G---K~vvVIGRS~iVGkPla~LL~~-----~~-------ATVTicHs~---------- 247 (345)
T PLN02897 193 FVSCTPKGCVELLIRSGVEIAG---KNAVVIGRSNIVGLPMSLLLQR-----HD-------ATVSTVHAF---------- 247 (345)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHH-----CC-------CEEEEEcCC----------
Confidence 3566788888889999998888 999999975 567778877764 22 245666553
Q ss_pred ChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 376 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 376 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+.+.|+.|+.++|+.
T Consensus 248 -------------------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 -------------------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347888888 899999999999999999983
No 156
>PRK13243 glyoxylate reductase; Reviewed
Probab=81.73 E-value=15 Score=39.49 Aligned_cols=145 Identities=21% Similarity=0.167 Sum_probs=85.9
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHHh---------CC-------------CCCCCCCceEEEeCcchHHHHHHHH
Q 007499 285 KRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL-------------SLTDFADQKIVVVGAGSAGLGVLKM 339 (601)
Q Consensus 285 ~~~~~FnDDi---QGTaav~LAgll~Alr~~---------g~-------------~l~dl~~~riv~~GAGsAg~GiA~l 339 (601)
..+++.|--- +..|=-+++.+|+..|.. |. .-.+|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 3455555321 234555677777776641 11 0135666999999999999999998
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeec-C---
Q 007499 340 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS-G--- 415 (601)
Q Consensus 340 l~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S-~--- 415 (601)
+... |+ +++.+|+.. . . .. ...+ . ....+|.|+++. .|+++=.- .
T Consensus 169 l~~~-----G~-------~V~~~d~~~----~-~-~~--~~~~--~-------~~~~~l~ell~~--aDiV~l~lP~t~~ 217 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR----K-P-EA--EKEL--G-------AEYRPLEELLRE--SDFVSLHVPLTKE 217 (333)
T ss_pred HHHC-----CC-------EEEEECCCC----C-h-hh--HHHc--C-------CEecCHHHHHhh--CCEEEEeCCCChH
Confidence 8754 43 588888741 1 1 00 0011 0 012469999987 79877432 1
Q ss_pred CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007499 416 VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 466 (601)
Q Consensus 416 ~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~A 466 (601)
.-+.|+++.+..|. +..++.=.|.=..--|-.-.+|+ .+|+.-.|
T Consensus 218 T~~~i~~~~~~~mk----~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gA 262 (333)
T PRK13243 218 TYHMINEERLKLMK----PTAILVNTARGKVVDTKALVKAL--KEGWIAGA 262 (333)
T ss_pred HhhccCHHHHhcCC----CCeEEEECcCchhcCHHHHHHHH--HcCCeEEE
Confidence 13789999999993 56777777754332222222333 36665444
No 157
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.69 E-value=1.1 Score=48.73 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=61.5
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCC--CC------CCChhhhcccc-
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 384 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fa~- 384 (601)
++|++ .||+|+|+|..|.-+|..|+.+.+ ++|.++|.+=+=..+ |. ++-..|..-+.
T Consensus 37 ~~l~~---~~VliiG~GglG~~v~~~La~~Gv-----------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~ 102 (370)
T PRK05600 37 ERLHN---ARVLVIGAGGLGCPAMQSLASAGV-----------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAE 102 (370)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHH
Confidence 55666 999999999999999999887544 689999998331111 11 11111211111
Q ss_pred ---c-cCC--CCCcc---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe
Q 007499 385 ---D-PGD--FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 440 (601)
Q Consensus 385 ---~-~~~--~~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 440 (601)
. .+. +.... ...++.+.+++ .|++|.++.. .=++-+|..+|. ....|.|++
T Consensus 103 ~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~-~~~iP~v~~ 162 (370)
T PRK05600 103 RLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAE-ITGTPLVWG 162 (370)
T ss_pred HHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHH-HcCCCEEEE
Confidence 0 011 10000 11245666766 6888877643 223455666654 445788876
No 158
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.49 E-value=10 Score=40.63 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=78.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc--cCC-CCCCChhhhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
-||+|.|| |.-|..+|..|+.. |+-..+....++++|.+.-. ..+ .-++.+..-++..+. ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~------~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV------VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc------eecCC
Confidence 47999999 99999999887652 33100111379999985421 111 112332221221110 11357
Q ss_pred HHHHhcccCCcEEEeecCCCCC--CC------------HHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhcccCC-
Q 007499 398 LLEVVRKVKPHVLLGLSGVGGV--FN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 461 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~~-erPIIFaLSNPt~~aE~tpeda~~wt~G- 461 (601)
+.+++++ +|++|=+.+.+.. .| +++++.|.+ ++ ..-||+-.|||.. ++..-+++++.|
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~~~~~ 145 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDK-YAKKNVKVLVVGNPAN---TNALILLKYAPSI 145 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEecCcHH---HHHHHHHHHcCCC
Confidence 8888987 8988855554321 23 556677754 64 6889999999984 777777776521
Q ss_pred --cEEEEcCCCCCc
Q 007499 462 --NIVFASGSPFEN 473 (601)
Q Consensus 462 --rai~AsGSPf~p 473 (601)
+. |.||+=.+.
T Consensus 146 ~~~~-ig~gt~LDs 158 (325)
T cd01336 146 PKEN-FTALTRLDH 158 (325)
T ss_pred CHHH-EEeeehHHH
Confidence 22 556644443
No 159
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.43 E-value=1.3 Score=43.88 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=47.6
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc-cCCCCCc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGL 392 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~-~~~~~~~ 392 (601)
++|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+=+ .. .+|+.+ .|.+. ..+ -+.
T Consensus 15 ~~L~~---s~VlviG~gglGsevak~L~~~GV-----------g~i~lvD~d~v-e~--snl~rq--~~~~~~~~~-iG~ 74 (198)
T cd01485 15 NKLRS---AKVLIIGAGALGAEIAKNLVLAGI-----------DSITIVDHRLV-ST--EDLGSN--FFLDAEVSN-SGM 74 (198)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEECCcC-Ch--hcCccc--Eecccchhh-cCc
Confidence 34555 999999999999999999987644 68999999732 22 234321 22221 011 011
Q ss_pred ccCCCHHHHhcccCCcEEEe
Q 007499 393 REGASLLEVVRKVKPHVLLG 412 (601)
Q Consensus 393 ~~~~~L~e~V~~vkptvLIG 412 (601)
.....+.+.++...|++=|=
T Consensus 75 ~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 75 NRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred hHHHHHHHHHHHHCCCCEEE
Confidence 11223566677777777443
No 160
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=81.35 E-value=1.5 Score=41.44 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|||+|+|.||+..|..+.. .| .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEecc
Confidence 69999999999999999983 23 478888664
No 161
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.35 E-value=1.4 Score=42.81 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=27.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999865 44 689999997
No 162
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.00 E-value=1.5 Score=40.58 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=54.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
||+++|+|.-|.-+|+.|+.+ |. ++|.++|.+-+ .. .+|..+ .|.... +. +......+.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~--~nl~r~--~~~~~~-~v-G~~Ka~~~~~~l 62 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL--SNLNRQ--FLARQA-DI-GKPKAEVAARRL 62 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc--chhhcc--ccCChh-HC-CChHHHHHHHHH
Confidence 689999999999999999765 44 68999999733 22 234322 222111 00 111123466677
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007499 403 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 403 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 444 (601)
+...|.+=|-.- ...++++..... ..+--||+..+..
T Consensus 63 ~~~~p~v~i~~~--~~~~~~~~~~~~---~~~~diVi~~~d~ 99 (143)
T cd01483 63 NELNPGVNVTAV--PEGISEDNLDDF---LDGVDLVIDAIDN 99 (143)
T ss_pred HHHCCCcEEEEE--eeecChhhHHHH---hcCCCEEEECCCC
Confidence 777776655433 223344322222 2345577755544
No 163
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.59 E-value=1.3 Score=51.66 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
|.+.||+|+|||.-|.-+|+.|+.+++ ++|.+||.+-+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~V 373 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKV 373 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEE
Confidence 334999999999999999999988755 68999998744
No 164
>PRK05442 malate dehydrogenase; Provisional
Probab=80.59 E-value=6.2 Score=42.41 Aligned_cols=121 Identities=21% Similarity=0.192 Sum_probs=72.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc---cCCCCCCChhhhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI---TKERKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi---~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
-||.|+|| |..|..+|-.|+.... .+. .+. ..|.|+|.+.-. ....-+|.+...+|-+.. . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDM--LGK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhh--cCC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 9999999887765433 110 011 279999985321 111124555443443221 1 1235
Q ss_pred HHHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhccc
Q 007499 398 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHA 459 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~Ma~~~~-erPIIFaLSNPt~~aE~tpeda~~wt 459 (601)
..+.+++ .|++|=+.+. +|- .=+++++.+.+ ++ ...||+-.|||.. ++..-+++++
T Consensus 74 ~y~~~~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s 144 (326)
T PRK05442 74 PNVAFKD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE-VAARDVKVLVVGNPAN---TNALIAMKNA 144 (326)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEeCCchH---HHHHHHHHHc
Confidence 6677887 7887744443 341 12345556643 55 6999999999994 7777777765
No 165
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.58 E-value=1.6 Score=44.72 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++|++ .||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~---~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKA---ARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcC---CeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 35666 9999999999999999999875 43 689999997
No 166
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.54 E-value=6.9 Score=40.54 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+||.|+|+|..|.+||..+..+ |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988653 42 68888874
No 167
>PLN02602 lactate dehydrogenase
Probab=80.22 E-value=5.5 Score=43.24 Aligned_cols=128 Identities=20% Similarity=0.302 Sum_probs=78.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|.+-=..++- -+|.+.. +|-.. ... ....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i---~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKI---LASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEE---EeCCCHHH
Confidence 399999999999999987764 3553 4799999742111111 2344433 22221 111 11234554
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007499 401 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 463 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~---~g~Ft~------------evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--Gra 463 (601)
+++ .|++|=+.+. +| -|+ ++++.|.+ ++..-+|+-.|||.. ....-+++++. =+-
T Consensus 103 -~~d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~-~~p~~ivivvtNPvd---v~t~~~~k~sg~p~~r 174 (350)
T PLN02602 103 -TAG--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAK-YSPDTILLIVSNPVD---VLTYVAWKLSGFPANR 174 (350)
T ss_pred -hCC--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCchH---HHHHHHHHHhCCCHHH
Confidence 666 7888855443 33 233 66777754 899999999999994 66777777762 133
Q ss_pred EEEcCCCCC
Q 007499 464 VFASGSPFE 472 (601)
Q Consensus 464 i~AsGSPf~ 472 (601)
+|.+|.-.+
T Consensus 175 viG~gt~LD 183 (350)
T PLN02602 175 VIGSGTNLD 183 (350)
T ss_pred EEeecchHH
Confidence 667764443
No 168
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.89 E-value=3.2 Score=41.42 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=64.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
..||.|+|+|..|..+|..+... |.. -.++++.+++. +.+.+...+..|- . ....++.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~~~~~~~~~~~~~--~------~~~~~~~~ 62 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----NVEKLDQLQARYN--V------STTTDWKQ 62 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----CHHHHHHHHHHcC--c------EEeCChHH
Confidence 37999999999999998887642 210 01346666542 0011222222221 0 11246788
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC-CcEEEEcC
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASG 468 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~-Grai~AsG 468 (601)
++++ .|++| +++.+.. -+++++.++. +-...+|+.++.-.+. +..-+|.+ +..++-++
T Consensus 63 ~~~~--~DiVi-iavp~~~-~~~v~~~l~~-~~~~~~vis~~~gi~~-----~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 63 HVTS--VDTIV-LAMPPSA-HEELLAELSP-LLSNQLVVTVAAGIGP-----SYLEERLPKGTPVAWIM 121 (245)
T ss_pred HHhc--CCEEE-EecCHHH-HHHHHHHHHh-hccCCEEEEECCCCCH-----HHHHHHcCCCCeEEEEC
Confidence 8876 78776 4444444 4889998853 3234577777766553 34444433 33444454
No 169
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=79.77 E-value=1.4 Score=50.03 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=33.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
+.+-|.+++|||+-|++||+-|+..++ ++|.+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecCee
Confidence 446999999999999999999999977 68999998533
No 170
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=79.50 E-value=4.3 Score=43.11 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCC
Q 007499 296 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 374 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 374 (601)
+.-.+|-+|++--++..+.+|.. .++||+|.+. -|--+|.||..+ + ..+.+|.|+
T Consensus 134 ~~~PCTp~gi~~ll~~~~i~l~G---k~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~--------- 189 (283)
T COG0190 134 GFLPCTPAGIMTLLEEYGIDLRG---KNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR--------- 189 (283)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC---------
Confidence 34456889999999999998888 9999999974 577788877763 2 246666663
Q ss_pred CChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007499 375 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 427 (601)
Q Consensus 375 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 427 (601)
..+|.+.+++ +|++|-+-+.|+.|+.++|+.
T Consensus 190 --------------------T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 --------------------TKDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred --------------------CCCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 2358888888 899999999999999988874
No 171
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.32 E-value=1.7 Score=44.48 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 349999999999999999998765 44 689999987
No 172
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=79.30 E-value=9.3 Score=40.97 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=81.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc--cCC-CCCCChhhhccccccCCCCCcccCCCH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGASL 398 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L 398 (601)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .+. .-+|.+...++... . ....+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~-~-----~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDG-V-----VPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCc-e-----eccCCh
Confidence 6899999 99999999877653 33100000169999984321 111 12454444333211 0 012246
Q ss_pred HHHhcccCCcEEEeecCCC---CC-C----------CHHHHHHhhhcC-CCCCeEEecCCCCCccCCCHHHHhcccC---
Q 007499 399 LEVVRKVKPHVLLGLSGVG---GV-F----------NEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHAG--- 460 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~---g~-F----------t~evv~~Ma~~~-~erPIIFaLSNPt~~aE~tpeda~~wt~--- 460 (601)
.+.+++ .|++|=+.+.+ |- . =+++++.|.+ + ++.-||+-.|||. .++..-+++++.
T Consensus 70 ~~~~~~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~-~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~ 143 (324)
T TIGR01758 70 AVAFTD--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK-LAKKDCKVLVVGNPA---NTNALVLSNYAPSIP 143 (324)
T ss_pred HHHhCC--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcH---HHHHHHHHHHcCCCC
Confidence 777888 78887555543 21 1 1456777754 7 4889999999999 477777877773
Q ss_pred CcEEEEcCCCCCcee
Q 007499 461 ENIVFASGSPFENVD 475 (601)
Q Consensus 461 Grai~AsGSPf~pv~ 475 (601)
.+ +|.||+=.+...
T Consensus 144 ~~-vig~gt~LDs~R 157 (324)
T TIGR01758 144 PK-NFSALTRLDHNR 157 (324)
T ss_pred cc-eEEEeeehHHHH
Confidence 24 788887666543
No 173
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.15 E-value=3.9 Score=41.82 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=55.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCC-cccCCCHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG-LREGASLLEV 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~-~~~~~~L~e~ 401 (601)
||.|+|+|+.|..+|..|..+ | .+++++|+++=-.+ .+......+ .+ .+... .....++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~g~~~-~~-~~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLD---ALNENGLRL-ED-GEITVPVLAADDPAEL 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHH---HHHHcCCcc-cC-CceeecccCCCChhHc
Confidence 799999999999998888653 3 36888887431110 010000000 00 00000 0012345554
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
+ ++|++| +++. .--++++++.++....+.-+|+.+.|...
T Consensus 65 -~--~~d~vi-la~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 -G--PQDLVI-LAVK-AYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred -C--CCCEEE-Eecc-cccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 478776 4432 23468999998653445556777999754
No 174
>PLN03139 formate dehydrogenase; Provisional
Probab=79.12 E-value=19 Score=39.74 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=82.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCC
Q 007499 318 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 318 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+...- ... .+ .... ....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~~----~~~--~~----~~g~-----~~~~~ 248 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKMD----PEL--EK----ETGA-----KFEED 248 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCcc----hhh--Hh----hcCc-----eecCC
Confidence 45669999999999999999999764 33 57778875320 000 00 0000 01247
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCc
Q 007499 398 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 473 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~p 473 (601)
|.|+++. .|+++=..- .-+.|+++.+..|. +.-+++=.|.=.---|-.-.+|+ ..|+.-.|..-=|.+
T Consensus 249 l~ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL--~sG~l~GAaLDV~~~ 320 (386)
T PLN03139 249 LDAMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK----KGVLIVNNARGAIMDTQAVADAC--SSGHIGGYGGDVWYP 320 (386)
T ss_pred HHHHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC----CCeEEEECCCCchhhHHHHHHHH--HcCCceEEEEcCCCC
Confidence 9999977 788773321 12789999999994 46677766653321122222333 367766565543332
Q ss_pred eecCCCeeeecccccccccchhhH
Q 007499 474 VDLGNGKIGHVNQANNMYLFPGIG 497 (601)
Q Consensus 474 v~~~~G~~~~p~Q~NN~~iFPGig 497 (601)
--.+ ....--+..|..+-|=++
T Consensus 321 EPlp--~d~pL~~~pNvilTPHia 342 (386)
T PLN03139 321 QPAP--KDHPWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCC--CCChhhcCCCeEEccccc
Confidence 2111 001112345888888776
No 175
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=78.76 E-value=3.5 Score=42.42 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+.-||-|-.| ++.+++..+..... .+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 94 l~g~NTD~~G--------~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 94 LVGYNTDGIG--------LVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred EEEEcCCHHH--------HHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 5556666554 55666543444445 899999999777777766653 23 268888873
No 176
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=78.47 E-value=7.2 Score=41.68 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=75.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
||.|+|| |..|..+|-+|+. .|+- ..+.|+|.+. ..+- -||.+.. .+. .........++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 6899999 9999999988754 2442 5799999876 1221 2454432 110 0000001124778
Q ss_pred HhcccCCcEEEeecCCC---CC-------CC----HHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHHhccc---CCc
Q 007499 401 VVRKVKPHVLLGLSGVG---GV-------FN----EEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHA---GEN 462 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~---g~-------Ft----~evv~~Ma~~~~erPIIFaLSNPt~-~aE~tpeda~~wt---~Gr 462 (601)
++++ .|++|=+.+.+ |- .+ +++.+.+. +++...||+-.|||.. ++.+..+-+++++ ..|
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~-~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~r 140 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVA-ESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNK 140 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHH-HhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHH
Confidence 8888 78877554443 31 11 34555664 3889999999999995 1223555565543 223
Q ss_pred EEEEcCCCCC
Q 007499 463 IVFASGSPFE 472 (601)
Q Consensus 463 ai~AsGSPf~ 472 (601)
+|.+|. .+
T Consensus 141 -ViG~g~-LD 148 (312)
T TIGR01772 141 -LFGVTT-LD 148 (312)
T ss_pred -EEeeec-ch
Confidence 556664 44
No 177
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.40 E-value=1.7 Score=47.01 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|++ .||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 4566 9999999999999999998765 43 689999987
No 178
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=78.20 E-value=3.3 Score=46.58 Aligned_cols=56 Identities=23% Similarity=0.529 Sum_probs=39.4
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 287 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 287 ~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+.=||-|-. |++.+++..+..++. .+++|+|+|.+|.+++..+.. .|. +++++|++
T Consensus 309 l~G~NTD~~--------G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 309 IEGYNTDGE--------GLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 344565654 578888877777777 999999999777766666653 342 57877763
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.14 E-value=3.4 Score=46.45 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=58.0
Q ss_pred HHHHHhCCCeEEeeCCCChHHHHHHHHhcc-CC--ccccCcchhHHHHHHHHHHHHHHh--------CCCCCCCCCceEE
Q 007499 257 EAVHARWPKAIFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFADQKIV 325 (601)
Q Consensus 257 ~av~~~~P~~l~EDf~~~~Af~iL~ryr~~-~~--~FnDDiQGTaav~LAgll~Alr~~--------g~~l~dl~~~riv 325 (601)
+-+....|+.-.|=+....-.++.++|.-. .| .+|++..+.|....+-+++.++.. ...-.+ .+++
T Consensus 140 ~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~dVv 216 (515)
T TIGR03140 140 NQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP---YDVL 216 (515)
T ss_pred HHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC---CCEE
Confidence 444445675444445556667788888755 44 458888888888888888887654 112234 7899
Q ss_pred EeCcchHHHHHHHHHHH
Q 007499 326 VVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 326 ~~GAGsAg~GiA~ll~~ 342 (601)
|+|||+||+..|..+..
T Consensus 217 IIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 217 VVGGGPAGAAAAIYAAR 233 (515)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 99999999999887654
No 180
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=78.11 E-value=1.3 Score=48.46 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++|.+ .||+|+|+|..|.-+|..|+.+.+ ++|.++|.+
T Consensus 38 ~~L~~---~~VlviG~GGlGs~va~~La~~Gv-----------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKN---ARVLVIGAGGLGSPTLLYLAAAGV-----------GTLGIVEFD 75 (392)
T ss_pred HHHhc---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 45566 999999999999999999987644 689999987
No 181
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=77.97 E-value=14 Score=40.30 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=71.5
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCccccccCCCCCccccccchhhhHH-----HhhcCCCCCc-eecEEee
Q 007499 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLD 221 (601)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY-----~a~gGI~P~~-~lPV~LD 221 (601)
|. ++..|-..+.++|+.. .++++ +++|+ .+--+-..|.+.+-+..+....+ ..--||..-. .+|+
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~--- 233 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI--- 233 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc---
Confidence 54 3556667788888864 46665 77874 46655555555444433322222 1223554322 1332
Q ss_pred ccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeEEeeCCCChHHHHHHHHhccCCccccCcchhHHHH
Q 007499 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 301 (601)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~ 301 (601)
|- +-.|+|++.+.+.+... -+.+++.|.+
T Consensus 234 -G~-------------------------~~t~~~l~~la~~~g~~----------~~~i~~e~~~--------------- 262 (396)
T cd01979 234 -GP-------------------------DGTRAWLEAICSAFGIF----------PSVLAEREAR--------------- 262 (396)
T ss_pred -Ch-------------------------HHHHHHHHHHHHHhCCC----------hhHHHHHHHH---------------
Confidence 21 22677887777766310 0122332221
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 007499 302 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 302 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 342 (601)
+.-++......|.. .|++|+|-+.-..++++.|.+
T Consensus 263 ---~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 263 ---AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred ---HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHH
Confidence 33444444455556 899999998888898888876
No 182
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.70 E-value=8.6 Score=40.40 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=57.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccC-C--CC-C-cccCC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-D--FM-G-LREGA 396 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~-~--~~-~-~~~~~ 396 (601)
.||.|+|+|..|..+|..+..+ | .+++++|+..-.. .+......+..... + +. . .....
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 66 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGD----ELRAHGLTLTDYRGRDVRVPPSAIAFST 66 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHH----HHHhcCceeecCCCcceecccceeEecc
Confidence 5799999999999999998764 3 2688888742110 01000000000000 0 00 0 00012
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007499 397 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 447 (601)
Q Consensus 397 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~ 447 (601)
++ ++++. +|++|=+... -..+++++.+.....+..+|..++|....
T Consensus 67 ~~-~~~~~--~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 67 DP-AALAT--ADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred Ch-hhccC--CCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 34 45544 7887743322 23478888886534566788888997653
No 183
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=77.69 E-value=16 Score=38.91 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCC
Q 007499 318 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 318 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
+|.++++.|+|.|..|..+|+.+..+ |+ +++.+|+.. .. ....+ .+. ...+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~--~~~~~-~~~----------~~~~ 183 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS--WPGVQ-SFA----------GREE 183 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC--CCCce-eec----------cccc
Confidence 45559999999999999999999865 33 577788631 11 00000 110 1246
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh--cccCCcEEEEcCCCC
Q 007499 398 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPF 471 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~--~wt~Grai~AsGSPf 471 (601)
|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|. .++--|+|+ .-..|+.-.|.--=|
T Consensus 184 l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 184 LSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP----DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC----CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCC
Confidence 9999988 788773211 12678889999983 4567765554 445445444 234666544432223
Q ss_pred CceecCCCeeeecccccccccchhhH
Q 007499 472 ENVDLGNGKIGHVNQANNMYLFPGIG 497 (601)
Q Consensus 472 ~pv~~~~G~~~~p~Q~NN~~iFPGig 497 (601)
++-..+.. ..-=+..|+++-|=+|
T Consensus 254 ~~EPl~~~--~pl~~~~nvi~TPHia 277 (312)
T PRK15469 254 SREPLPPE--SPLWQHPRVAITPHVA 277 (312)
T ss_pred CCCCCCCC--ChhhcCCCeEECCcCC
Confidence 22111101 0112345777777665
No 184
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.67 E-value=1.8 Score=42.92 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=51.4
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 393 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~ 393 (601)
++|++ .||+|+|+|.-|.-+|+.|+.+.+ ++|.++|.+- +.. .+|+.+ .|.... + -+.+
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~GV-----------g~i~lvD~d~-ve~--snL~rq--fl~~~~-d-iG~~ 75 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLSGI-----------GSLTILDDRT-VTE--EDLGAQ--FLIPAE-D-LGQN 75 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHcCC-----------CEEEEEECCc-ccH--hhCCCC--ccccHH-H-cCch
Confidence 44556 999999999999999999987544 6899999973 222 234321 222211 1 1111
Q ss_pred cCCCHHHHhcccCCcEEEeec
Q 007499 394 EGASLLEVVRKVKPHVLLGLS 414 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S 414 (601)
....+.+.++...|++-|=..
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 124577888888999876544
No 185
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.66 E-value=34 Score=36.46 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=108.2
Q ss_pred cCCccccC---cchhHHHHHHHHHHHHHHh---------CC------------CCCCCCCceEEEeCcchHHHHHHHHHH
Q 007499 286 RFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL------------SLTDFADQKIVVVGAGSAGLGVLKMAV 341 (601)
Q Consensus 286 ~~~~FnDD---iQGTaav~LAgll~Alr~~---------g~------------~l~dl~~~riv~~GAGsAg~GiA~ll~ 341 (601)
.+.+.|-- -+.+|=-+++.+|+..|.. |+ ...+|.++++.|+|.|..|..+|+++.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 45555532 2355666788888776632 11 113566799999999999999999886
Q ss_pred HHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEee----cCCC
Q 007499 342 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVG 417 (601)
Q Consensus 342 ~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~~ 417 (601)
.. |+ +|+.+|+.+- + . .+ ...+|.|+++. .|+++=. ....
T Consensus 169 ~f-----gm-------~V~~~~~~~~-----~----~---~~----------~~~~l~ell~~--sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 169 AF-----GM-------RVLIGQLPGR-----P----A---RP----------DRLPLDELLPQ--VDALTLHCPLTEHTR 212 (317)
T ss_pred hC-----CC-------EEEEECCCCC-----c----c---cc----------cccCHHHHHHh--CCEEEECCCCChHHh
Confidence 54 33 5777776420 0 0 00 12469999988 7988732 2224
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh--cccCCcEEEEcCCCCCceecCCCeeeecccccccccchh
Q 007499 418 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPG 495 (601)
Q Consensus 418 g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~--~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPG 495 (601)
|.|+++.+..|. +..++.=.|.= ++--|+|+ +-.+|+.-.|.=-=|.+-..+.+..+.--+..|+.+-|=
T Consensus 213 ~li~~~~~~~mk----~ga~lIN~aRG----~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPH 284 (317)
T PRK06487 213 HLIGARELALMK----PGALLINTARG----GLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPH 284 (317)
T ss_pred cCcCHHHHhcCC----CCeEEEECCCc----cccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCc
Confidence 899999999993 56777766653 33333333 223677654432122111111111111003458899998
Q ss_pred hHHHHHHcCCcccCHHHHHHHHHHHhccCC
Q 007499 496 IGLGTLLSGARFITDGMLQQAAECLASYMT 525 (601)
Q Consensus 496 iglG~l~~~a~~itd~m~~aAA~aLA~~v~ 525 (601)
++-.. ..-...|...+++.|.....
T Consensus 285 ia~~t-----~e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 285 SAWGS-----REARQRIVGQLAENARAFFA 309 (317)
T ss_pred cccCC-----HHHHHHHHHHHHHHHHHHHc
Confidence 86222 22234455555555555543
No 186
>PRK14851 hypothetical protein; Provisional
Probab=77.38 E-value=6.4 Score=46.44 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCC--CC------CCChhhhcccc-
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 384 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fa~- 384 (601)
++|++ .||+|+|+|..|.-+|..|+.+++ .+|.++|-+=+-..+ |. ++-..|..-+.
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 45566 999999999999999988887644 689999987433221 21 12222222221
Q ss_pred ---ccCC---CCCcc---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC----------CCC
Q 007499 385 ---DPGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS----------NPT 445 (601)
Q Consensus 385 ---~~~~---~~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS----------NPt 445 (601)
..++ ..... ...++.+.+++ .|++|-+......-++-.|...|. .+..|+|++-. +|.
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~-~~~iP~i~~g~~G~~g~~~~~~p~ 181 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAR-EKGIPVITAGPLGYSSAMLVFTPQ 181 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEeecccccceEEEEcCC
Confidence 1111 00001 12356777776 799995553211112345666654 56799998754 676
Q ss_pred CccCCCHHHHhcccCC
Q 007499 446 MNAECTAADAFKHAGE 461 (601)
Q Consensus 446 ~~aE~tpeda~~wt~G 461 (601)
....++.|.+.++
T Consensus 182 ---~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 ---GMGFDDYFNIGGK 194 (679)
T ss_pred ---CCCHhHhccCCCC
Confidence 5788888888777
No 187
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.34 E-value=11 Score=41.26 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|.|+|+|+-|+.+|..+...
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999998863
No 188
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.32 E-value=14 Score=42.23 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=111.2
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHHh---------CC----C--CCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 007499 285 KRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL----S--LTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 346 (601)
Q Consensus 285 ~~~~~FnDDi---QGTaav~LAgll~Alr~~---------g~----~--l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 346 (601)
..+++.|-.- +.+|=-+++-+|+..|.. |. . -.+|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3455555321 235556677777777631 10 0 1245559999999999999999998754
Q ss_pred hcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCH
Q 007499 347 MAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNE 422 (601)
Q Consensus 347 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~ 422 (601)
|+ +++.+|+.. . +.+ ...... ...+|.|+++. .|+++=+- ..-+.|++
T Consensus 163 --G~-------~V~~~d~~~--~-------~~~--~~~~g~------~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 163 --GM-------KVIAYDPYI--S-------PER--AAQLGV------ELVSLDELLAR--ADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred --CC-------EEEEECCCC--C-------hhH--HHhcCC------EEEcHHHHHhh--CCEEEEccCCChHhhcCcCH
Confidence 43 688888741 1 100 000000 12369999887 78876432 12378999
Q ss_pred HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHH
Q 007499 423 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 502 (601)
Q Consensus 423 evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~ 502 (601)
+.+..|. +..++.-.|.-..--|.--.+|++ +|+.-.|.=-=|.+-... .. .--+..|+.+-|=+|-...-
T Consensus 215 ~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~-~~--pL~~~~nvilTPHia~~t~e 285 (526)
T PRK13581 215 EELAKMK----PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPT-DS--PLFELPNVVVTPHLGASTAE 285 (526)
T ss_pred HHHhcCC----CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCC-Cc--hhhcCCCeeEcCccccchHH
Confidence 9999994 567888777755433333334443 566543321111111010 01 11123588899988743332
Q ss_pred cCCcccCHHHHHHHHHHHhccCCCC
Q 007499 503 SGARFITDGMLQQAAECLASYMTDE 527 (601)
Q Consensus 503 ~~a~~itd~m~~aAA~aLA~~v~~~ 527 (601)
+ ...|...+++.+......+
T Consensus 286 ~-----~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 286 A-----QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred H-----HHHHHHHHHHHHHHHHcCC
Confidence 2 3445556666666665543
No 189
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=77.14 E-value=2.2 Score=45.91 Aligned_cols=39 Identities=31% Similarity=0.567 Sum_probs=32.1
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.+|+. .||+|+|+|.-|.-+|..|..+ |+ .+|.++|.+-
T Consensus 20 ~~L~~---~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLRE---KHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 44556 9999999999999999988765 44 6899999963
No 190
>PRK07680 late competence protein ComER; Validated
Probab=76.86 E-value=7.2 Score=40.05 Aligned_cols=98 Identities=9% Similarity=0.203 Sum_probs=57.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
+|.|+|+|..|..+|..|... | +. ...++++|++- . ... .++..... .....+..++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~v~v~~r~~----~--~~~----~~~~~~~g---~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVK----PSQLTITNRTP----A--KAY----HIKERYPG---IHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCCH----H--HHH----HHHHHcCC---eEEECCHHHH
Confidence 689999999999999887653 3 11 13678777741 0 111 11111000 0112457777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
++. +|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 60 ~~~--aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 60 ISQ--SDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 765 67765 332 233357888877542345678889998775
No 191
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.70 E-value=3.9 Score=45.99 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHhCCCeEEeeCCCChHHHHHHHHhcc-CC--ccccCcchhHHHHHHHHHHHHHHhCC--------CCCCCCCceEEEe
Q 007499 259 VHARWPKAIFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQKIVVV 327 (601)
Q Consensus 259 v~~~~P~~l~EDf~~~~Af~iL~ryr~~-~~--~FnDDiQGTaav~LAgll~Alr~~g~--------~l~dl~~~riv~~ 327 (601)
+....|+.-+|=+....-.++.++|.-. .| .+|++....|....+-++..++.... ...+ -.++|+
T Consensus 141 ~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dvvII 217 (517)
T PRK15317 141 MAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YDVLVV 217 (517)
T ss_pred HHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CCEEEE
Confidence 3344565435555556667788888654 44 45888888899999999998875321 1233 689999
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 328 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 328 GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|||.||+..|..+.. .|+ ++.++|.+
T Consensus 218 GgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 218 GGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred CCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 999999999988854 464 56666654
No 192
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=76.47 E-value=4.8 Score=43.58 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=54.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc--ccCCCCCCChhhhccccccCCCC-CcccCCCH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKERKNLDPAAAPFAKDPGDFM-GLREGASL 398 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~r~~l~~~k~~fa~~~~~~~-~~~~~~~L 398 (601)
.+|.|+|||+=|+.+|..+.+. |- .=++|..|.+=. |..+|. ...|...- ..+ ...-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~-----N~~yLp~i-~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE-----NPKYLPGI-LLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc-----CccccCCc-cCCcccccccCH
Confidence 6899999999999999998863 31 126777664310 111111 11122110 000 01124678
Q ss_pred HHHhcccCCcE-EEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 399 LEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 399 ~e~V~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
.++++. .|+ |++++++ |-+++++.|.....++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 444 5555543 66778877743234455555444
No 193
>PLN02306 hydroxypyruvate reductase
Probab=76.14 E-value=17 Score=40.11 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=78.4
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCcchHHHHHHHHHHHHH
Q 007499 286 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAA 344 (601)
Q Consensus 286 ~~~~FnDDi---QGTaav~LAgll~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~ 344 (601)
.+.+.|--- ..+|=-+++-+|+.+|-. |. .-.+|.++++.|+|.|..|..+|+++..+|
T Consensus 109 gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~f 188 (386)
T PLN02306 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
T ss_pred CCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 466666421 234445677777776532 10 012466699999999999999999986432
Q ss_pred HHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhcccc-----ccCCCCCcccCCCHHHHhcccCCcEEEee----cC
Q 007499 345 ARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-----DPGDFMGLREGASLLEVVRKVKPHVLLGL----SG 415 (601)
Q Consensus 345 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~-----~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~ 415 (601)
|+ +|+.+|+..- +.+......+.. ...+. ......+|.|+++. .|+++-. ..
T Consensus 189 ----Gm-------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~L~ell~~--sDiV~lh~Plt~~ 249 (386)
T PLN02306 189 ----KM-------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPV-TWKRASSMEEVLRE--ADVISLHPVLDKT 249 (386)
T ss_pred ----CC-------EEEEECCCCc-----hhhhhhhhhhcccccccccccc-cccccCCHHHHHhh--CCEEEEeCCCChh
Confidence 33 6888887421 011110011110 00000 00012479999988 8998863 12
Q ss_pred CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 416 VGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 416 ~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
..|.|+++.++.|. +.-++.=.|.
T Consensus 250 T~~lin~~~l~~MK----~ga~lIN~aR 273 (386)
T PLN02306 250 TYHLINKERLALMK----KEAVLVNASR 273 (386)
T ss_pred hhhhcCHHHHHhCC----CCeEEEECCC
Confidence 24899999999993 4566665554
No 194
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.09 E-value=2.5 Score=45.70 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=32.0
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++|++ .||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 44566 9999999999999999888765 44 689999998
No 195
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.25 E-value=3 Score=43.78 Aligned_cols=102 Identities=24% Similarity=0.276 Sum_probs=56.2
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChh-----hhccccccCCCCCcc
Q 007499 320 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-----AAPFAKDPGDFMGLR 393 (601)
Q Consensus 320 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~-----k~~fa~~~~~~~~~~ 393 (601)
++.+|+|.|| |-.|..+++.|++ .| .+++.+|++.- ......+. +..+.. .+ ..
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~--~D---l~ 62 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TSPNLFELLNLAKKIEDHF--GD---IR 62 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cchhHHHHHhhcCCceEEE--cc---CC
Confidence 3489999997 6677666666654 34 36887877521 10111000 001111 01 11
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCC----------------CCHHHHHHhhhcCC-CCCeEEecC
Q 007499 394 EGASLLEVVRKVKPHVLLGLSGVGGV----------------FNEEVLKAMRESDS-VKPAIFAMS 442 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~~-erPIIFaLS 442 (601)
+..++.++++..+||++|=+.+.+.. .+..++++|.. .+ .+.+||.=|
T Consensus 63 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~iv~~SS 127 (349)
T TIGR02622 63 DAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRA-IGSVKAVVNVTS 127 (349)
T ss_pred CHHHHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHh-cCCCCEEEEEec
Confidence 23468888888899999977764321 13445666643 33 357888654
No 196
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=74.89 E-value=7.7 Score=40.86 Aligned_cols=124 Identities=22% Similarity=0.294 Sum_probs=71.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-ccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
|.|+|||..|..+|-.++. .|+. ..|.++|.+ .++..-..+|.+....+. .. .. ....+ .+.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~DL~~~~~~~~-~~-~i---~~~~~-~~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDALDLSHASAFLA-TG-TI---VRGGD-YADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHhHHHhccccC-CC-eE---EECCC-HHHh
Confidence 5799999999888866654 3553 479999973 221111124555443321 11 00 01234 4567
Q ss_pred cccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEEEE
Q 007499 403 RKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVFA 466 (601)
Q Consensus 403 ~~vkptvLIG~S~~---~g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt--~Grai~A 466 (601)
++ .|++|=+.+. +|- .=+++++.+. +++..-+|+-.|||.. +..+-+.+++ +-+-+|+
T Consensus 65 ~~--aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~-~~~p~~~viv~sNP~d---~~~~~~~~~sg~~~~kviG 138 (300)
T cd00300 65 AD--ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK-KYGPDAIILVVSNPVD---ILTYVAQKLSGLPKNRVIG 138 (300)
T ss_pred CC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEccChHH---HHHHHHHHHhCcCHHHEEe
Confidence 77 6887644333 331 1145666664 4889999999999984 6666666653 1223556
Q ss_pred cCC
Q 007499 467 SGS 469 (601)
Q Consensus 467 sGS 469 (601)
+|.
T Consensus 139 ~gt 141 (300)
T cd00300 139 SGT 141 (300)
T ss_pred cCC
Confidence 653
No 197
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=74.82 E-value=2.9 Score=43.93 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 369 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 369 (601)
+|++ .+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.
T Consensus 27 kL~~---s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~ 67 (268)
T PRK15116 27 LFAD---AHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCV 67 (268)
T ss_pred HhcC---CCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecc
Confidence 3455 9999999999999999988865 44 6899999884433
No 198
>PRK07574 formate dehydrogenase; Provisional
Probab=74.81 E-value=22 Score=39.22 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=98.7
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh---------C--------CCCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 007499 286 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G--------LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 345 (601)
Q Consensus 286 ~~~~FnDDi---QGTaav~LAgll~Alr~~---------g--------~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 345 (601)
.+.+.|-.- +.+|=-+++-+|+.+|-. | ....+|.+++|.|+|.|..|..+|+.+...
T Consensus 137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~f-- 214 (385)
T PRK07574 137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPF-- 214 (385)
T ss_pred CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 466666432 234444678888776621 1 012345669999999999999999998764
Q ss_pred HhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecC----CCCCCC
Q 007499 346 RMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFN 421 (601)
Q Consensus 346 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft 421 (601)
|+ +++.+|+...- . +....+ . .....+|.|+++. .|+++=.-- .-+.|+
T Consensus 215 ---G~-------~V~~~dr~~~~----~---~~~~~~--g------~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~ 267 (385)
T PRK07574 215 ---DV-------KLHYTDRHRLP----E---EVEQEL--G------LTYHVSFDSLVSV--CDVVTIHCPLHPETEHLFD 267 (385)
T ss_pred ---CC-------EEEEECCCCCc----h---hhHhhc--C------ceecCCHHHHhhc--CCEEEEcCCCCHHHHHHhC
Confidence 33 58888875320 0 000011 0 0113579999988 798863321 137899
Q ss_pred HHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhH
Q 007499 422 EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 497 (601)
Q Consensus 422 ~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 497 (601)
++.+..|. +..++.=.|.=..--|..-.+|++ .|+.-.|..-=|.+-..+.... --+-.|+.+-|=++
T Consensus 268 ~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~EPlp~d~p--L~~~pNvilTPHia 335 (385)
T PRK07574 268 ADVLSRMK----RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFPQPAPADHP--WRTMPRNGMTPHIS 335 (385)
T ss_pred HHHHhcCC----CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCCCCCCCCCh--HHhCCCeEECCccc
Confidence 99999994 567888777644322333334443 6766555442222111110110 01234777777665
No 199
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.71 E-value=3 Score=40.76 Aligned_cols=31 Identities=35% Similarity=0.672 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999999875 43 78899985
No 200
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.92 E-value=4.5 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 369 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 369 (601)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999888542 3 5899999987665
No 201
>PRK06932 glycerate dehydrogenase; Provisional
Probab=73.49 E-value=21 Score=38.09 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=69.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCC
Q 007499 317 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 396 (601)
Q Consensus 317 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~ 396 (601)
.+|.++++.|+|-|..|-.+|+++... |+ +++.+|+..- . .. .. ...
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~--------~----~~-~~--------~~~ 189 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA--------S----VC-RE--------GYT 189 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc--------c----cc-cc--------ccC
Confidence 356669999999999999999888654 33 5666665310 0 00 00 124
Q ss_pred CHHHHhcccCCcEEEee----cCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEc
Q 007499 397 SLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFAS 467 (601)
Q Consensus 397 ~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~As 467 (601)
+|.|+++. .|+++=. ...-|.|+++.+..|. +..++.=.|.=.---|.--.+|++ +|+.-.|.
T Consensus 190 ~l~ell~~--sDiv~l~~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAa 256 (314)
T PRK06932 190 PFEEVLKQ--ADIVTLHCPLTETTQNLINAETLALMK----PTAFLINTGRGPLVDEQALLDALE--NGKIAGAA 256 (314)
T ss_pred CHHHHHHh--CCEEEEcCCCChHHhcccCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH--cCCccEEE
Confidence 69999988 7988732 2224899999999993 567777666533322222223333 66655443
No 202
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.37 E-value=4.9 Score=42.97 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.||.|+|+|+-|..+|..|.+
T Consensus 8 mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 789999999999999998765
No 203
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.24 E-value=7.2 Score=41.50 Aligned_cols=114 Identities=18% Similarity=0.287 Sum_probs=69.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhcccc-ccCCCCCcccCCCHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAK-DPGDFMGLREGASLLE 400 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~-~~~~~~~~~~~~~L~e 400 (601)
||.|+|||..|.-+|.+|+. .|+- +.+.|+|.+-=..++. -||.+.. .|.. ..... ...+ .+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i----~~~~-y~ 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGLF-----SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKI----RAGD-YD 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEE----EECC-HH
Confidence 68999999999999987764 3442 4799999731111111 1444332 2221 11000 1123 45
Q ss_pred HhcccCCcEEEeecCC---CCCCC--------------HHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc
Q 007499 401 VVRKVKPHVLLGLSGV---GGVFN--------------EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 459 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~---~g~Ft--------------~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt 459 (601)
.+++ .|++|=+.+. ||- | +++++.+.+ ++...|++-.|||.. +...-+++++
T Consensus 65 ~~~~--aDivvitaG~~~kpg~-tr~R~dll~~N~~I~~~i~~~i~~-~~p~~i~ivvsNPvD---v~t~~~~k~s 133 (307)
T cd05290 65 DCAD--ADIIVITAGPSIDPGN-TDDRLDLAQTNAKIIREIMGNITK-VTKEAVIILITNPLD---IAVYIAATEF 133 (307)
T ss_pred HhCC--CCEEEECCCCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCcHH---HHHHHHHHHh
Confidence 6777 7887745444 342 3 466777754 889999999999984 6666666654
No 204
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=73.24 E-value=5 Score=43.28 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+.||||+|+|.||+..|+.|... |.+ .+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~~-----~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GFT-----GELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CCC-----CCEEEeCCC
Confidence 348999999999999999988753 321 368888765
No 205
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=73.20 E-value=20 Score=38.00 Aligned_cols=126 Identities=21% Similarity=0.322 Sum_probs=72.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc---cccCCCCCCChhhhccccccCCCCCcccCCCH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDPGDFMGLREGASL 398 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G---Li~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L 398 (601)
||.|+|| |..|..+|..++. .|+. ..++++|++- .+...+.++.+....+.... .+ ....+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i---~~~~d- 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EI---KISSD- 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCCC-----CEEEEEECcccccccccccchhhhchhccCCCc-EE---EECCC-
Confidence 7999998 9999999987765 3442 3799999852 11111112221110110010 11 11234
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--Cc
Q 007499 399 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--EN 462 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--Gr 462 (601)
.+.+++ .|++|=+.+.| | .+-+++++.|.+ ++...+|+-.+||.+ +....+++++. .+
T Consensus 67 ~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~-~~~~~~viv~~npvd---~~t~~~~~~~g~~~~ 140 (309)
T cd05294 67 LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAE-FAPDTKILVVTNPVD---VMTYKALKESGFDKN 140 (309)
T ss_pred HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH---HHHHHHHHhcCCCHH
Confidence 345777 78877554432 2 235677777854 778999999999985 55555554431 12
Q ss_pred EEEEcCC
Q 007499 463 IVFASGS 469 (601)
Q Consensus 463 ai~AsGS 469 (601)
-+|.+|.
T Consensus 141 ~viG~gt 147 (309)
T cd05294 141 RVFGLGT 147 (309)
T ss_pred HEeeccc
Confidence 3567664
No 206
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=73.12 E-value=9.9 Score=40.94 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=67.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-ccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.++|||..|-..|-+|+. +++. +.+.|+|.. +...-..-+|.+..-+.-.+. .. ....+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~-~i---~~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDV-KI---TGDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCce-EE---ecCCC-hh
Confidence 389999999999888888833 4443 379999987 221111224543322111111 00 01123 44
Q ss_pred HhcccCCcEEEee---cCCCC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007499 401 VVRKVKPHVLLGL---SGVGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 457 (601)
Q Consensus 401 ~V~~vkptvLIG~---S~~~g-----------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~ 457 (601)
.++. .|+.|=+ .-.|| ..-+++.+.+++ ++...||+-.|||.. .+..-+++
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~-~~~d~ivlVvtNPvD---~~ty~~~k 130 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAK-YAPDAIVLVVTNPVD---ILTYIAMK 130 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCeEEEEecCcHH---HHHHHHHH
Confidence 5666 6776633 33445 133567777764 899999999999995 45555544
No 207
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=73.06 E-value=5.4 Score=41.74 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=70.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
|.|+|||..|.++|..+.. .|+. .++++|.+==..+.. .++.+.. .+...... .....+. +++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~---I~~t~d~-~~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIVEGLPQGKALDISQAA-PILGSDTK---VTGTNDY-EDI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeE---EEEcCCH-HHh
Confidence 5799999999999887764 3431 699999861000000 0111110 00000000 0112454 457
Q ss_pred cccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCc---EEE
Q 007499 403 RKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGEN---IVF 465 (601)
Q Consensus 403 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Gr---ai~ 465 (601)
++ .|++|=+.+.| |- .-+++++.|.+ ++...+|+-.|||.. .....+++++ |. -+|
T Consensus 65 ~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~-~~p~~~iIv~sNP~d---i~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 65 AG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKK-YAPNAIVIVVTNPLD---VMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred CC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCHHHEE
Confidence 76 78887333322 21 22477888854 888889999999995 5666666665 32 367
Q ss_pred EcCCCC
Q 007499 466 ASGSPF 471 (601)
Q Consensus 466 AsGSPf 471 (601)
++|+-.
T Consensus 138 Glgt~l 143 (300)
T cd01339 138 GMAGVL 143 (300)
T ss_pred EecchH
Confidence 887443
No 208
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=72.96 E-value=3.5 Score=39.30 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 325 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 325 v~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|+|||.||+..|..|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 455 348999987
No 209
>PRK07411 hypothetical protein; Validated
Probab=72.79 E-value=3 Score=45.74 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=32.7
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|++ .||+|+|+|.-|.-+|..|+.+++ ++|.++|.+
T Consensus 34 ~~L~~---~~VlivG~GGlG~~va~~La~~Gv-----------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKA---ASVLCIGTGGLGSPLLLYLAAAGI-----------GRIGIVDFD 71 (390)
T ss_pred HHHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 45566 999999999999999999987755 689999987
No 210
>PRK06270 homoserine dehydrogenase; Provisional
Probab=72.74 E-value=32 Score=37.04 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=64.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEecCccccCCCCCCChhh-hccccccCC---CCCccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGD---FMGLRE 394 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~---~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k-~~fa~~~~~---~~~~~~ 394 (601)
.||.++|.|..|.+++++|.+. +.++.|+.. +=+-++|++|.+.+.+. ++..+ ..++..... +.+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~----~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL----KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCccccc
Confidence 6899999999999999998753 222234321 22457799998887652 33221 223222110 000001
Q ss_pred CCCHHHHhcccCCcEEEeecCC---CCCCCHHH-HHHhhhcCCCCCeEE
Q 007499 395 GASLLEVVRKVKPHVLLGLSGV---GGVFNEEV-LKAMRESDSVKPAIF 439 (601)
Q Consensus 395 ~~~L~e~V~~vkptvLIG~S~~---~g~Ft~ev-v~~Ma~~~~erPIIF 439 (601)
..++.|+++...+|++|=++.. .+-...++ .+++ + +..+||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL-~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKAL-E--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHH-H--CCCEEEc
Confidence 2479999988889999976642 12222455 4444 2 4678877
No 211
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=72.61 E-value=6.5 Score=39.16 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=57.3
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccc---cccCCCCCcccCCCH
Q 007499 323 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA---KDPGDFMGLREGASL 398 (601)
Q Consensus 323 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa---~~~~~~~~~~~~~~L 398 (601)
||.|+| +|..|..+|..+.+. | .+++++|++ .+ .+......+. .... ........+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~--~~~~l~~~~~~~~~~~g-~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE--KAEEAAAKALEELGHGG-SDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH--HHHHHHHHHHhhccccC-CCceEEEeCh
Confidence 799997 899999999988653 3 367777763 11 1111111110 0000 0000011356
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 399 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
.|+++. +|++| ++. +-...+++++.++. .-...+|+.++||.+
T Consensus 63 ~ea~~~--aDvVi-lav-p~~~~~~~l~~l~~-~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAV-PWDHVLKTLESLRD-ELSGKLVISPVVPLA 105 (219)
T ss_pred HHHHhc--CCEEE-EEC-CHHHHHHHHHHHHH-hccCCEEEEeccCce
Confidence 788876 78766 443 33344777787753 223479999999986
No 212
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.38 E-value=80 Score=32.07 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
||.|+|+|..|..+++-|.. .|.. .+.+++.|+. . +........+. .. ....+..|++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~-----~g~~----~~~i~v~~r~----~--~~~~~l~~~~~--~~-----~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLT-----SPAD----VSEIIVSPRN----A--QIAARLAERFP--KV-----RIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHh-----CCCC----hheEEEECCC----H--HHHHHHHHHcC--Cc-----eEeCCHHHHH
Confidence 68999999999999888864 3432 1356666652 1 11111111121 00 1124677777
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007499 403 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 447 (601)
Q Consensus 403 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~ 447 (601)
+. .|++| ++..+..+ +++++... ..+..+|+..+-+++.
T Consensus 60 ~~--aDvVi-lav~p~~~-~~vl~~l~--~~~~~~vis~~ag~~~ 98 (258)
T PRK06476 60 DR--SDVVF-LAVRPQIA-EEVLRALR--FRPGQTVISVIAATDR 98 (258)
T ss_pred Hh--CCEEE-EEeCHHHH-HHHHHHhc--cCCCCEEEEECCCCCH
Confidence 66 56655 33334333 66776652 3455678877766653
No 213
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.31 E-value=20 Score=38.42 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=71.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc--cCCC-CCCChhhhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
.||.|+|| |..|..+|-.|+.. |+-.-.=...+.|+|.+.-. .++. -||.+...+|.... . -..+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-V-----ITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-E-----EecC
Confidence 58999999 99999888876642 33100001279999985432 1111 24554443443211 1 1134
Q ss_pred HHHHhcccCCcEEEeecCC---CCCCC------------HHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhccc
Q 007499 398 LLEVVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHA 459 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~---~g~Ft------------~evv~~Ma~~~~-erPIIFaLSNPt~~aE~tpeda~~wt 459 (601)
..+.+++ .|++|=+.+. +| .| +++.+.+. +++ +.-||+-.|||.. +...-+++++
T Consensus 72 ~~~~~~d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~-~~~~~~~iiivvsNPvD---~~t~~~~k~s 142 (322)
T cd01338 72 PNVAFKD--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALN-DVASRDVKVLVVGNPCN---TNALIAMKNA 142 (322)
T ss_pred cHHHhCC--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHH-hhCCCCeEEEEecCcHH---HHHHHHHHHc
Confidence 5677877 7988844443 33 23 34566664 377 4889999999984 6666666655
No 214
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=72.22 E-value=18 Score=41.23 Aligned_cols=198 Identities=20% Similarity=0.166 Sum_probs=108.4
Q ss_pred ccCCccccC---cchhHHHHHHHHHHHHHHh---------CC----C--CCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 007499 285 KRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL----S--LTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 346 (601)
Q Consensus 285 ~~~~~FnDD---iQGTaav~LAgll~Alr~~---------g~----~--l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 346 (601)
..+++.|-- -+.+|=-+++.+|+..|.. |+ . -.+|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 345555532 2345556677777766631 10 0 1245559999999999999999998754
Q ss_pred hcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEee-c---CCCCCCCH
Q 007499 347 MAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-S---GVGGVFNE 422 (601)
Q Consensus 347 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S---~~~g~Ft~ 422 (601)
|+ +++.+|+.. .. .+ ...... ....+|.|+++. .|+++=+ . ..-+.|++
T Consensus 161 --G~-------~V~~~d~~~--~~-------~~--~~~~g~-----~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SP-------ER--AEQLGV-----ELVDDLDELLAR--ADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred --CC-------EEEEECCCC--Ch-------hH--HHhcCC-----EEcCCHHHHHhh--CCEEEEccCCChhhccCcCH
Confidence 43 688888741 11 00 000000 012469999887 7887622 1 22478999
Q ss_pred HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeecccccccccchhhHHHHHH
Q 007499 423 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 502 (601)
Q Consensus 423 evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~ 502 (601)
+.+..|. +..++.=.|.-.---|..-.+|++ .|+.-.|.=-=|++-... .. .--+..|+.+-|=+|-....
T Consensus 214 ~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~-~~--pL~~~~nvi~TPHia~~t~e 284 (525)
T TIGR01327 214 EELAKMK----KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPT-DN--PLFDLDNVIATPHLGASTRE 284 (525)
T ss_pred HHHhcCC----CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCC-CC--hhhcCCCeEECCCccccHHH
Confidence 9999993 567888777655433333344444 666554421111110000 01 11234588888887643332
Q ss_pred cCCcccCHHHHHHHHHHHhccCCC
Q 007499 503 SGARFITDGMLQQAAECLASYMTD 526 (601)
Q Consensus 503 ~~a~~itd~m~~aAA~aLA~~v~~ 526 (601)
+ ...|...+++.+-+....
T Consensus 285 ~-----~~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 285 A-----QENVATQVAEQVLDALKG 303 (525)
T ss_pred H-----HHHHHHHHHHHHHHHHcC
Confidence 2 233444555555555443
No 215
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.61 E-value=10 Score=39.96 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||.|+|+|+.|.++|..|..+ | .++.++|++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 5899999999999999998764 3 247777774
No 216
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.55 E-value=16 Score=38.10 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~~-----~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GLA-----GEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----cEEEEEECC
Confidence 6899999999999998887653 431 368888874
No 217
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.53 E-value=3.6 Score=44.10 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+++|+|.-|.-+|+.|+.+++ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 68999999999999999987755 689999986
No 218
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.00 E-value=18 Score=38.54 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=76.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCC-CCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.|+|||..|..+|..|+. .|+. ..|.|+|.+-=...+ ..+|.+.. +|.... .. ....+.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~~-----~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~-~v---~~~~dy~~ 68 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGLA-----DELVLVDVVEDKLKGEAMDLQHGS-AFLKNP-KI---EADKDYSV 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHHHHHhh-ccCCCC-EE---EECCCHHH
Confidence 599999999999988887653 3542 579999974211111 01344333 332211 11 11245555
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcE
Q 007499 401 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENI 463 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~---~g~Ft~------------evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt--~Gra 463 (601)
+++ .|++|=+.+. +| -|+ ++++.|. +++..-+|+-.|||.. ....-+++++ .-+-
T Consensus 69 -~~~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~-~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~ 140 (312)
T cd05293 69 -TAN--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLV-KYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHR 140 (312)
T ss_pred -hCC--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEccChHH---HHHHHHHHHhCCCHHH
Confidence 677 7888644433 33 233 5666775 4899999999999995 6666666653 1123
Q ss_pred EEEcCCCC
Q 007499 464 VFASGSPF 471 (601)
Q Consensus 464 i~AsGSPf 471 (601)
+|.+|+-.
T Consensus 141 viG~gt~L 148 (312)
T cd05293 141 VIGSGCNL 148 (312)
T ss_pred EEecCchH
Confidence 66776543
No 219
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=70.69 E-value=13 Score=37.17 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=44.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChh-hhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA-FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e-eA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
+||.|+|.|..+ .+|.-+...+.. ++..+ -+..-+.+.|..-+++.- .+-..+-..|++. |.-
T Consensus 42 ~rI~~~G~GgSa-~~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~-and~~~~~~f~~q------------l~~ 105 (196)
T PRK10886 42 NKILCCGNGTSA-ANAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAI-ANDRLHDEVYAKQ------------VRA 105 (196)
T ss_pred CEEEEEECcHHH-HHHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHH-hccccHHHHHHHH------------HHH
Confidence 999999999887 477777765541 11000 001112222222222210 1111222233332 222
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAM 428 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~M 428 (601)
.. -+-|++|+.|..|. |+++++.+
T Consensus 106 ~~--~~gDvli~iS~SG~--s~~v~~a~ 129 (196)
T PRK10886 106 LG--HAGDVLLAISTRGN--SRDIVKAV 129 (196)
T ss_pred cC--CCCCEEEEEeCCCC--CHHHHHHH
Confidence 22 24799999998665 58888887
No 220
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=69.99 E-value=3.8 Score=41.66 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
-.|+|+|||.||+..|..|.. .|+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR-----AGI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH-----TTC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh-----ccc-------ccccchhcccc
Confidence 579999999999999888875 454 48888886543
No 221
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=69.98 E-value=6.6 Score=41.87 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=41.8
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 007499 294 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQ 342 (601)
Q Consensus 294 iQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~ 342 (601)
--+||-++.-+++.+...+|..|++ ..+.|+|| |..|.+||+.|..
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsq---atvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQ---ATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHH---CeEEEecCCchHHHHHHHHhcc
Confidence 3478889999999999999999999 99999998 9999999999876
No 222
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.50 E-value=14 Score=38.80 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
||.|+|||+.|..+|..|.+. | .++.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecCH
Confidence 699999999999999988764 3 3577777753
No 223
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.15 E-value=11 Score=42.44 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=63.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.+|-|+|.|..|..+|..|... |. +++++|++ .++ ..+....-...... .....++.|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~--~~~l~~~~~~~g~~---i~~~~s~~e~ 60 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK--TEEFVKKAKEGNTR---VKGYHTLEEL 60 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH--HHHHHHhhhhcCCc---ceecCCHHHH
Confidence 4799999999999999998753 43 58888873 111 11111100000000 0124679999
Q ss_pred hccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007499 402 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 445 (601)
Q Consensus 402 V~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt 445 (601)
++.. +|+++| +.-.++...+++++.+.....+..||.=+||=.
T Consensus 61 v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 61 VNSLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HhcCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9865 588555 333467777888887755456678999999854
No 224
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.74 E-value=5.4 Score=37.91 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=53.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.||-|+|.|..|.+||+.|... |. +++.+|+. ++.-+.+..... ....|+.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----------~~~~~~~~~~g~-----~~~~s~~e~ 54 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----------PEKAEALAEAGA-----EVADSPAEA 54 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----------HHHHHHHHHTTE-----EEESSHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----------hhhhhhhHHhhh-----hhhhhhhhH
Confidence 5899999999999999999653 43 68888863 111122332211 124689999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHH--hhhcCCCCCeEEecCCCCC
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKA--MRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~--Ma~~~~erPIIFaLSNPt~ 446 (601)
++. .+++|-+-. .+.=.++++.. +.....+..||.=+|+-.+
T Consensus 55 ~~~--~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 55 AEQ--ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHH--BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhc--ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 998 477664321 11223455554 3333456778887887555
No 225
>PRK06153 hypothetical protein; Provisional
Probab=68.50 E-value=3.5 Score=45.59 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 393 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~ 393 (601)
.+|++ .||+|+|+|..|--|+++|+.. |+ ++|.++|.+=+-. .+|+..---|-.++-. ....
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~Ve~---SNLnRQ~gaf~~~DvG-k~~~ 233 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDFLQ---HNAFRSPGAASIEELR-EAPK 233 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEecc---cccccccccCCHhHcC-Ccch
Confidence 45667 9999999999999999998875 43 6899999973222 2343321011111100 0000
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 394 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
....+.+.++...|.+ ...+..++++-+..+. +-.+||
T Consensus 234 KVevaa~rl~~in~~I----~~~~~~I~~~n~~~L~----~~DiV~ 271 (393)
T PRK06153 234 KVDYFKSRYSNMRRGI----VPHPEYIDEDNVDELD----GFTFVF 271 (393)
T ss_pred HHHHHHHHHHHhCCeE----EEEeecCCHHHHHHhc----CCCEEE
Confidence 1123666666666644 3345667888887662 455666
No 226
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.43 E-value=4.8 Score=41.36 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=27.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999988765 44 689999998
No 227
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=68.24 E-value=50 Score=36.57 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=110.5
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHHh---------C---C---CCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 007499 285 KRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 346 (601)
Q Consensus 285 ~~~~~FnDDi---QGTaav~LAgll~Alr~~---------g---~---~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 346 (601)
..++++|--- ..+|=-+++.+|+.+|-. | + .-.+|.+.++.|+|.|..|..+|+.+...
T Consensus 97 ~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f--- 173 (409)
T PRK11790 97 RGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL--- 173 (409)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC---
Confidence 4577777432 335556788888877631 1 0 11345669999999999999999988754
Q ss_pred hcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCH
Q 007499 347 MAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNE 422 (601)
Q Consensus 347 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~ 422 (601)
|+ +++.+|+.. ..... .+. ...+|.|+++. .|+++=.- ..-+.|++
T Consensus 174 --Gm-------~V~~~d~~~-----~~~~~-----~~~---------~~~~l~ell~~--sDiVslh~Plt~~T~~li~~ 223 (409)
T PRK11790 174 --GM-------RVYFYDIED-----KLPLG-----NAR---------QVGSLEELLAQ--SDVVSLHVPETPSTKNMIGA 223 (409)
T ss_pred --CC-------EEEEECCCc-----ccccC-----Cce---------ecCCHHHHHhh--CCEEEEcCCCChHHhhccCH
Confidence 33 688888631 00000 000 12479999988 78876321 11378999
Q ss_pred HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCC-CCceecCCCe--eeecccccccccchhhHHH
Q 007499 423 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENVDLGNGK--IGHVNQANNMYLFPGIGLG 499 (601)
Q Consensus 423 evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~Grai~AsGSP-f~pv~~~~G~--~~~p~Q~NN~~iFPGiglG 499 (601)
+.+..|. +.-++.-.|.-.---|---.+|++ +|+ |.+.|.- |++-...... ...--+..|+++-|=+|-.
T Consensus 224 ~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~ 296 (409)
T PRK11790 224 EELALMK----PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS 296 (409)
T ss_pred HHHhcCC----CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence 9999993 466777666543322222233333 566 3333221 2111110000 0111235689999988744
Q ss_pred HHHcCCcccCHHHHHHHHHHHhccCCC
Q 007499 500 TLLSGARFITDGMLQQAAECLASYMTD 526 (601)
Q Consensus 500 ~l~~~a~~itd~m~~aAA~aLA~~v~~ 526 (601)
..-+ ...|...+++.+......
T Consensus 297 t~ea-----~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 297 TQEA-----QENIGLEVAGKLVKYSDN 318 (409)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHcC
Confidence 3222 244555566666665543
No 228
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=68.11 E-value=10 Score=41.14 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~ 342 (601)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999875
No 229
>PRK00536 speE spermidine synthase; Provisional
Probab=67.99 E-value=7.8 Score=40.63 Aligned_cols=84 Identities=8% Similarity=0.037 Sum_probs=51.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC-CCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||+|+|+|-. |+++-++.. . +++.|||-++-|++ .++.++..+.-|..+.-+. ..-+.+
T Consensus 74 k~VLIiGGGDG--g~~REvLkh---------~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l-----~~~~~~ 134 (262)
T PRK00536 74 KEVLIVDGFDL--ELAHQLFKY---------D---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTH-----AKQLLD 134 (262)
T ss_pred CeEEEEcCCch--HHHHHHHCc---------C---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEE-----eehhhh
Confidence 79999999988 456655543 1 38999999998776 4455766555443222111 111222
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhh
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMR 429 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma 429 (601)
.- .-+-||+|-=|+ |+++-.+.+.
T Consensus 135 ~~-~~~fDVIIvDs~----~~~~fy~~~~ 158 (262)
T PRK00536 135 LD-IKKYDLIICLQE----PDIHKIDGLK 158 (262)
T ss_pred cc-CCcCCEEEEcCC----CChHHHHHHH
Confidence 11 135799996654 7777666654
No 230
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=67.91 E-value=23 Score=38.03 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=72.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc--cCC-CCCCChhhhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
-||.|+|| |..|..+|-.|+. .|+-.-+=...|.|+|.+.-. .++ .-||.+..-++.+.. . -..+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGV-V-----ATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCc-E-----EecC
Confidence 58999998 9999999887764 233100001279999986311 111 124444432332211 0 1235
Q ss_pred HHHHhcccCCcEEEeecCC---CCCCC------------HHHHHHhhhcCCC-CCeEEecCCCCCccCCCHHHHhccc
Q 007499 398 LLEVVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDSV-KPAIFAMSNPTMNAECTAADAFKHA 459 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~---~g~Ft------------~evv~~Ma~~~~e-rPIIFaLSNPt~~aE~tpeda~~wt 459 (601)
..+.+++ .|++|=+.+. +| .| +++++.+++ ++. .-||+--|||.. ++..-+++++
T Consensus 73 ~~~~~~d--aDvVVitAG~~~k~g-~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s 143 (323)
T TIGR01759 73 PEEAFKD--VDAALLVGAFPRKPG-MERADLLSKNGKIFKEQGKALNK-VAKKDVKVLVVGNPAN---TNALIASKNA 143 (323)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 6677887 7988845444 33 22 456667754 776 889999999994 7777777776
No 231
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=67.88 E-value=4.5 Score=40.62 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|+|+|||.||+..|..|.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 58999999999999987754 353 58999975
No 232
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=67.70 E-value=22 Score=38.12 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=82.3
Q ss_pred ccCCccccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 007499 285 KRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 285 ~~~~~FnDDi---QGTaav~LAgll~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
..+++.|--- ..+|=-+++.+|+.+|.. |. .-.+|.++++.|+|.|..|..+|+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 3455555322 345556777777777631 10 01256669999999999999999987522
Q ss_pred HHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEee-c---CCCCC
Q 007499 344 AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-S---GVGGV 419 (601)
Q Consensus 344 ~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S---~~~g~ 419 (601)
-|+ ++...|+.. + .+....+ . ....+|.|+++. .|+++=. . ..-|.
T Consensus 168 ----fgm-------~V~~~~~~~---~-----~~~~~~~--~-------~~~~~l~ell~~--sDvv~lh~plt~~T~~l 217 (323)
T PRK15409 168 ----FNM-------PILYNARRH---H-----KEAEERF--N-------ARYCDLDTLLQE--SDFVCIILPLTDETHHL 217 (323)
T ss_pred ----CCC-------EEEEECCCC---c-----hhhHHhc--C-------cEecCHHHHHHh--CCEEEEeCCCChHHhhc
Confidence 233 466666531 0 0000011 0 012479999987 7887632 1 11388
Q ss_pred CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh--cccCCcEEEE
Q 007499 420 FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFA 466 (601)
Q Consensus 420 Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~--~wt~Grai~A 466 (601)
|+++.++.|. +.-++.=.|. .++--|+|+ .-.+|+.-.|
T Consensus 218 i~~~~l~~mk----~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gA 258 (323)
T PRK15409 218 FGAEQFAKMK----SSAIFINAGR----GPVVDENALIAALQKGEIHAA 258 (323)
T ss_pred cCHHHHhcCC----CCeEEEECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 9999999993 4667665554 333333332 1236665444
No 233
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=67.70 E-value=17 Score=45.02 Aligned_cols=98 Identities=8% Similarity=0.092 Sum_probs=53.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc------------Ce---EEE--EecCccccC-CCCCCChhhhcc
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR------------NK---FFL--LDKDGLITK-ERKNLDPAAAPF 382 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~------------~~---i~l--vD~~GLi~~-~r~~l~~~k~~f 382 (601)
-.+|||.|+|..|.|.++++..... + =++.++-+ ++ +|- +.+.-.+.+ +..+-=+.+..|
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~-~-~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPH-T-FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCC-C-ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 4899999999999999998876522 1 12222221 11 220 111111111 101111112233
Q ss_pred ccccCCCCCcccC-CCH-HHHhcccCCcEEEeec----CCCCCCCHH-HHHHhh
Q 007499 383 AKDPGDFMGLREG-ASL-LEVVRKVKPHVLLGLS----GVGGVFNEE-VLKAMR 429 (601)
Q Consensus 383 a~~~~~~~~~~~~-~~L-~e~V~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma 429 (601)
+++. .+ ..+ ++++.. .|+|||+= ..|.++|++ +++.|.
T Consensus 281 ~~Pe-------~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk 325 (1042)
T PLN02819 281 AHPE-------HYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTR 325 (1042)
T ss_pred cCch-------hccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhc
Confidence 4432 22 234 468877 89999973 246779999 888884
No 234
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=67.31 E-value=6.4 Score=42.35 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
|+|+|||.||..+|..+.++ +.| .+|.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999998544 234 479999986544
No 235
>PRK07340 ornithine cyclodeaminase; Validated
Probab=67.22 E-value=32 Score=36.41 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=61.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.+++|+|+|..|...++.++.. .+. ++|+++|+. .. ....|+.............++.|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~------~a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AA------SAAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HH------HHHHHHHHHHhcCCeeEECCHHHH
Confidence 8999999999998887777653 233 478888884 11 111233221100000013578999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007499 402 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 455 (601)
Q Consensus 402 V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~tpeda 455 (601)
+++ .|++|-++..+ .+|+. ++| +.--|-++.--++ +.|+.++-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~-------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR-------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC-------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 89999876543 45554 232 3446777765333 668887643
No 236
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=66.71 E-value=5 Score=42.52 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=29.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+++|+|..|.-||+.|+.+.+ ++|.++|.+
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d 52 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTK 52 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCC
Confidence 999999999999999999987654 689999997
No 237
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=66.21 E-value=9.4 Score=43.62 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+++ .+++|+|||.+|.+|+..|.+ .|. +|+++|+.
T Consensus 376 ~~~~---k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR~ 411 (529)
T PLN02520 376 PLAG---KLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANRT 411 (529)
T ss_pred CCCC---CEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 4555 999999999666666555543 442 68888873
No 238
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=66.17 E-value=31 Score=37.65 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007499 296 GTAGVALAGLLGTVRAQGL----------------S-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 358 (601)
Q Consensus 296 GTaav~LAgll~Alr~~g~----------------~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 358 (601)
-||-++++-+|.++|-... + -.++..+||.|+|.|+.|.-||+.|..+. ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg------------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG------------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhcc------------ce
Confidence 5677777777777774221 1 13445599999999999999999988742 13
Q ss_pred EEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCC
Q 007499 359 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSV 434 (601)
Q Consensus 359 i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~e 434 (601)
|....+... .....+..+++. -++.|...+ .|+|+=+.- .-++|+++.+..|. +
T Consensus 188 i~y~~r~~~------~~~~~~~~~~~~----------~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk----~ 245 (336)
T KOG0069|consen 188 ILYHSRTQL------PPEEAYEYYAEF----------VDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK----D 245 (336)
T ss_pred eeeecccCC------chhhHHHhcccc----------cCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC----C
Confidence 443332111 122233344432 357777766 788874421 13789999999993 4
Q ss_pred CCeEEecCCCC
Q 007499 435 KPAIFAMSNPT 445 (601)
Q Consensus 435 rPIIFaLSNPt 445 (601)
.-+|.-.+.=.
T Consensus 246 g~vlVN~aRG~ 256 (336)
T KOG0069|consen 246 GAVLVNTARGA 256 (336)
T ss_pred CeEEEeccccc
Confidence 55555555433
No 239
>PLN02688 pyrroline-5-carboxylate reductase
Probab=65.79 E-value=24 Score=35.82 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=54.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCC-ChhhhcCeEEEE-ecCccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGN-NDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gl-s~eeA~~~i~lv-D~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
||.|+|.|..|..+|+-|++. |. . ..+|+++ |+. .. ....+....- ....+..|
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~~----~~~i~v~~~r~----~~------~~~~~~~~g~-----~~~~~~~e 57 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVVP----PSRISTADDSN----PA------RRDVFQSLGV-----KTAASNTE 57 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCCC----cceEEEEeCCC----HH------HHHHHHHcCC-----EEeCChHH
Confidence 689999999999999988653 32 1 1367777 542 11 1112221110 11246778
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
++++ .|++| ++. +....+++++.++....+..+|..+++.++
T Consensus 58 ~~~~--aDvVi-l~v-~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 58 VVKS--SDVII-LAV-KPQVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred HHhc--CCEEE-EEE-CcHHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 8775 67655 332 233467777766432344556666655554
No 240
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.41 E-value=5.4 Score=42.40 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=27.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999998875 44 589999987
No 241
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=64.99 E-value=18 Score=40.79 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=60.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVR 403 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~ 403 (601)
|-|+|.|..|..+|..|... |. +++++|+.- . .....++.+... .. .....++.|+++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt~----~--~~~~l~~~~~~g-~~---~~~~~s~~e~v~ 59 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRTP----E--KTDEFLAEHAKG-KK---IVGAYSIEEFVQ 59 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H--HHHHHHhhccCC-CC---ceecCCHHHHHh
Confidence 78999999999999998753 43 578777731 1 111111111100 00 012356888886
Q ss_pred cc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 404 KV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 404 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
.. +|+++| ++-.++...++++..+.....+.-||.=+||
T Consensus 60 ~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 60 SLERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred hcCCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 54 588665 3334677778888877543456789999998
No 242
>PRK06141 ornithine cyclodeaminase; Validated
Probab=64.42 E-value=38 Score=35.95 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=61.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.+++|+|+|..|..++..++.. .+. ++|+++|+. .. ........+.+...+ .....++.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~--~a~~~a~~~~~~g~~---~~~~~~~~~a 186 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA--KAEALAAELRAQGFD---AEVVTDLEAA 186 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHHhcCCc---eEEeCCHHHH
Confidence 8999999999999888766542 122 578888773 11 122222222111100 0123678999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHH
Q 007499 402 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAAD 454 (601)
Q Consensus 402 V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~~aE~tped 454 (601)
+++ .|++|-+++.+ -+|+.++++. .-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~-------g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP-------GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC-------CCEEEeeCCCCcccccCCHHH
Confidence 977 89998776543 3466665542 1244444 4455566888754
No 243
>PRK08291 ectoine utilization protein EutC; Validated
Probab=64.21 E-value=31 Score=36.80 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=58.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
++++|+|+|..|..++..+... .++ ++|.++++. .. ........+.+... .. .....++.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~--~a~~l~~~~~~~~g-~~-v~~~~d~~~a 194 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA--KAEAYAADLRAELG-IP-VTVARDVHEA 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHhhccC-ce-EEEeCCHHHH
Confidence 7899999999987776665542 233 578888773 11 12222222211100 00 0123678999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHH
Q 007499 402 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAAD 454 (601)
Q Consensus 402 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~~aE~tped 454 (601)
++. .|++|-++.. .-.|+.++++.- . -|.++ |+--...|+.|+-
T Consensus 195 l~~--aDiVi~aT~s~~p~i~~~~l~~g------~-~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 195 VAG--ADIIVTTTPSEEPILKAEWLHPG------L-HVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred Hcc--CCEEEEeeCCCCcEecHHHcCCC------c-eEEeeCCCCCCcccCCHHH
Confidence 986 7999876543 355777766532 1 23333 3322234888866
No 244
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=63.45 E-value=24 Score=39.26 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=45.6
Q ss_pred HHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-ccccCCCCCCChhhhccccc
Q 007499 307 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKD 385 (601)
Q Consensus 307 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fa~~ 385 (601)
.++.-....+.. .||+|+|-+.-..|+++.+.+ .|+.. ..+. .+.+ ... ..+.+. .-+.
T Consensus 300 ~~l~~~~~~l~G---krvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~-~~~~~~~~----~~~~~~-~~~~-- 359 (432)
T TIGR01285 300 DAMLDTHFFLGG---KKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAV-TTTGSPLL----QKLPVE-TVVI-- 359 (432)
T ss_pred HHHHHHHHhhCC---CEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEE-eCCCCHHH----HhCCcC-cEEe--
Confidence 444444444555 999999988888999988754 46632 1111 2111 000 011110 0011
Q ss_pred cCCCCCcccCCCHHHHhcccCCcEEEeec
Q 007499 386 PGDFMGLREGASLLEVVRKVKPHVLLGLS 414 (601)
Q Consensus 386 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S 414 (601)
.+...|++.+++.+||++||-|
T Consensus 360 -------~D~~~l~~~i~~~~~dliig~s 381 (432)
T TIGR01285 360 -------GDLEDLEDLACAAGADLLITNS 381 (432)
T ss_pred -------CCHHHHHHHHhhcCCCEEEECc
Confidence 1224588899999999999876
No 245
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=62.93 E-value=6.8 Score=42.02 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.+|+|+|||.+|+.+|..|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4799999999999999998763 4 3689999864
No 246
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=62.80 E-value=4.3 Score=49.85 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=32.9
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|.+ .||+++|+|.-|+-+++.|+.+++ ..|- ..+|.++|-+
T Consensus 415 ~kL~~---~kVlvvGaGGlG~e~lknLal~Gv-~~~~-----~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQN---LNIFLVGCGAIGCEMLKNFALMGV-GTGK-----KGMITVTDPD 457 (1008)
T ss_pred HHHhh---CcEEEECCChHHHHHHHHHHHhCC-CcCC-----CCeEEEECCC
Confidence 34556 999999999999999999887654 1111 2589999987
No 247
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=62.80 E-value=2.3e+02 Score=31.92 Aligned_cols=191 Identities=20% Similarity=0.210 Sum_probs=118.7
Q ss_pred CCCChhhhhHhHHHHHHHHHHhC-CC-eE-EeeCCCCh--HHHHHHHHhccC-----Ccc------ccCcc----hhHHH
Q 007499 241 PRLEGEEYLSIVDEFMEAVHARW-PK-AI-FEDFQMKW--AFETLERYRKRF-----CMF------NDDIQ----GTAGV 300 (601)
Q Consensus 241 ~R~~g~~Y~~~vdefv~av~~~~-P~-~l-~EDf~~~~--Af~iL~ryr~~~-----~~F------nDDiQ----GTaav 300 (601)
+..+-.|-..|...|++++.+.- |+ -+ =+|++..- =--+.+.|+.-. ++| .-=.+ -||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44677888999999999999888 64 46 89998632 112455554321 111 12222 23322
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhh
Q 007499 301 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 380 (601)
Q Consensus 301 ~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~ 380 (601)
+.-++-.|++..|..|+. .||.|-|-|.+|.-.|+.+.+. |- +=+-+=|++|-|++. +.|+..+.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~-~Gld~~~l 254 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE-DGLDVEAL 254 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC-CCCCHHHH
Confidence 222233777777877777 9999999999998888888753 42 457778999988876 34554333
Q ss_pred cccccc----CCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHH
Q 007499 381 PFAKDP----GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADA 455 (601)
Q Consensus 381 ~fa~~~----~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpeda 455 (601)
...++. .+..+ ....+= |.+-.+..||||=|.. .+..|++-.+.+.+ + +|.=-+| ||. -.+++.
T Consensus 255 ~~~~~~~~~v~~~~g-a~~i~~-~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a----k-~V~EgAN~P~t---~eA~~i 323 (411)
T COG0334 255 LELKERRGSVAEYAG-AEYITN-EELLEVDCDILIPCAL-ENVITEDNADQLKA----K-IVVEGANGPTT---PEADEI 323 (411)
T ss_pred HHHhhhhhhHHhhcC-ceEccc-cccccccCcEEccccc-ccccchhhHHHhhh----c-EEEeccCCCCC---HHHHHH
Confidence 211110 00000 001111 3344467899997775 79999999998843 2 8888888 875 455566
Q ss_pred hc
Q 007499 456 FK 457 (601)
Q Consensus 456 ~~ 457 (601)
+.
T Consensus 324 ~~ 325 (411)
T COG0334 324 LL 325 (411)
T ss_pred HH
Confidence 55
No 248
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.28 E-value=18 Score=37.88 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=54.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+ ..+.-. .. .....+.......+. +
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~-~~--~~~~~~~~~~~~~~~-~ 68 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVD-SV--HGDFHLPPVQAYRSA-E 68 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEE-eC--CCCeeecCceEEcch-h
Confidence 7999999999999999887664 3 24666665431 1100 111000 00 000000000001122 2
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
.+. .+|++| +++ +..-++++++.+.....+..+|+.|-|=-.
T Consensus 69 ~~~--~~D~vi-lav-K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 69 DMP--PCDWVL-VGL-KTTANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hcC--CCCEEE-EEe-cCCChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 233 367776 443 334468888888554456778888988765
No 249
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=61.98 E-value=47 Score=35.50 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=63.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.++.|+|+|.-|-..++.+... .. -++|+++|+. .++ .......+.+...+. ....+..|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~--~~~~~~~~~~~g~~v---~~~~~~~ea 189 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST--REKFALRASDYEVPV---RAATDPREA 189 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH--HHHHHHHHHhhCCcE---EEeCCHHHH
Confidence 7899999998776554444331 11 2689988873 111 111112221111000 124689999
Q ss_pred hcccCCcEEEeecC-CCCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007499 402 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 455 (601)
Q Consensus 402 V~~vkptvLIG~S~-~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~tpeda 455 (601)
+++ .|++|-++. ....|..+++| +..-|-++.-.++ +.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~-------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS-------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC-------CCCEEEecCCCCcccccCCHHHH
Confidence 987 899987653 33567877775 3456888876555 679998743
No 250
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=61.91 E-value=12 Score=40.01 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.+|||+|+|.||+..|+.|... +- .-+|.+++++.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCCC
Confidence 5899999999999999988552 11 136888887543
No 251
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.85 E-value=8.2 Score=41.43 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=27.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999865 43 689999987
No 252
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.44 E-value=7 Score=42.01 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.0
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+||+|+|||.||+..|-.|..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHh
Confidence 4899999999999999877754
No 253
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=61.37 E-value=5.5 Score=43.21 Aligned_cols=106 Identities=25% Similarity=0.413 Sum_probs=66.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
-+|+|+|.|-+|+--|++.+ |+. .++.++|.+ .+| |....-.|..+..-. ......++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r--l~~ldd~f~~rv~~~--~st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR--LRQLDDLFGGRVHTL--YSTPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH--HhhhhHhhCceeEEE--EcCHHHHHHH
Confidence 78999999999998887654 333 367777764 222 333333343221000 0012458999
Q ss_pred hcccCCcEEEee-----cCCCCCCCHHHHHHhhhcCCCCCeE----------EecCCCCCccCCCHH
Q 007499 402 VRKVKPHVLLGL-----SGVGGVFNEEVLKAMRESDSVKPAI----------FAMSNPTMNAECTAA 453 (601)
Q Consensus 402 V~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~~~~erPII----------FaLSNPt~~aE~tpe 453 (601)
|++ .|.+||. +..|.+.|+|+++.|. +--+| |-=|.||+.++-|.+
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk----pGsVivDVAiDqGGc~Et~~~TTh~~PtY~ 289 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK----PGSVIVDVAIDQGGCFETSHPTTHDDPTYE 289 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcC----CCcEEEEEEEcCCCceeccccccCCCCcee
Confidence 987 8999886 4456789999999994 23333 555667766665543
No 254
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=60.57 E-value=7.2 Score=42.34 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~ 342 (601)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 69999999999999988764
No 255
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=60.02 E-value=9.3 Score=38.25 Aligned_cols=35 Identities=17% Similarity=0.463 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|.+.|+||+|+|..|..-++.|+.+. .+|.+++.+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g------------a~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG------------AQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC------------CEEEEEcCC
Confidence 44599999999999999988888753 268888874
No 256
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=59.72 E-value=5.9 Score=41.37 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|.|+|||-.|-|||+...++ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4578999999999999987764 54 69999985
No 257
>PRK06184 hypothetical protein; Provisional
Probab=59.57 E-value=8.4 Score=42.89 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=26.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+..|+|+|||.+|+..|-+|.. .|+ ++.++|+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 4789999999999999988765 454 46777765
No 258
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.20 E-value=8.8 Score=40.12 Aligned_cols=32 Identities=31% Similarity=0.645 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 4899999999999999988764 43 57777753
No 259
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=59.14 E-value=8.1 Score=41.42 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=24.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999987764 354 46677765
No 260
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=58.85 E-value=5.5 Score=41.05 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.+..|+|+|||.||+..|..+.. .|+ ++.++|++--
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~~ 59 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKLS 59 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCCC
Confidence 34789999999999999887643 454 6888988643
No 261
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=58.82 E-value=58 Score=36.24 Aligned_cols=128 Identities=23% Similarity=0.315 Sum_probs=83.9
Q ss_pred ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC
Q 007499 291 NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 370 (601)
Q Consensus 291 nDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~ 370 (601)
.|.-.||+--++-|++.|.. .-+.- ..+|+.|=|--|-|||..+... | -++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~RaTn---~liaG---K~vVV~GYG~vGrG~A~~~rg~-----G-------A~ViVtEv------ 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRATN---VLLAG---KNVVVAGYGWVGRGIAMRLRGM-----G-------ARVIVTEV------ 240 (420)
T ss_pred cccccccchhHHHHHHhhhc---eeecC---ceEEEecccccchHHHHHhhcC-----C-------CeEEEEec------
Confidence 37779999999999987654 44444 8999999999999999877653 2 24554332
Q ss_pred CCCCCChhhhccccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCC
Q 007499 371 ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 450 (601)
Q Consensus 371 ~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~ 450 (601)
+|.+.-=|.- ++ -.--++.||++. .|++|-+++.-++.+.|.++.|. .=.|.+=+=- -.-|+
T Consensus 241 -----DPI~AleA~M----dG-f~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk-----DgaIl~N~GH-Fd~EI 302 (420)
T COG0499 241 -----DPIRALEAAM----DG-FRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK-----DGAILANAGH-FDVEI 302 (420)
T ss_pred -----CchHHHHHhh----cC-cEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc-----CCeEEecccc-cceec
Confidence 2221111110 00 012468999988 79999999999999999999993 3444432221 22367
Q ss_pred CHHH----HhcccC
Q 007499 451 TAAD----AFKHAG 460 (601)
Q Consensus 451 tped----a~~wt~ 460 (601)
..+. +.+|.+
T Consensus 303 ~~~~L~~~~~~~~~ 316 (420)
T COG0499 303 DVAGLEELAVEKRE 316 (420)
T ss_pred cHHHHHHhhhhHhc
Confidence 6665 445543
No 262
>PLN02527 aspartate carbamoyltransferase
Probab=58.55 E-value=2.6e+02 Score=29.96 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=83.4
Q ss_pred HHHhCCCeE-EeeCCCChHHHHHHHHhccCCccc--cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHH
Q 007499 259 VHARWPKAI-FEDFQMKWAFETLERYRKRFCMFN--DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLG 335 (601)
Q Consensus 259 v~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~Fn--DDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~G 335 (601)
|..+|.+++ ...+......++ .+| ..+||.| |+...--+=+||=++.-.+..|. ++. .||+++|.+.=+ -
T Consensus 92 vls~y~D~iviR~~~~~~~~~~-a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g---~kva~vGD~~~~-r 164 (306)
T PLN02527 92 TVEGYSDIIVLRHFESGAARRA-AAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIGR-LDG---IKVGLVGDLANG-R 164 (306)
T ss_pred HHHHhCcEEEEECCChhHHHHH-HHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhCC-cCC---CEEEEECCCCCC-h
Confidence 346678888 888877765544 344 4689999 44555666677777776666663 666 999999987432 2
Q ss_pred HHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhcccccc-CCCCCcccCCCHHHHhcccCCcEEEeec
Q 007499 336 VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP-GDFMGLREGASLLEVVRKVKPHVLLGLS 414 (601)
Q Consensus 336 iA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~-~~~~~~~~~~~L~e~V~~vkptvLIG~S 414 (601)
+++-++.++....|+ .|.++-.+|+- +++....+++.. ..+ ....++.|+|+. .||+.-.+
T Consensus 165 v~~Sl~~~~~~~~g~-------~v~~~~P~~~~------~~~~~~~~~~~~g~~~---~~~~d~~~a~~~--aDvvyt~~ 226 (306)
T PLN02527 165 TVRSLAYLLAKYEDV-------KIYFVAPDVVK------MKDDIKDYLTSKGVEW---EESSDLMEVASK--CDVLYQTR 226 (306)
T ss_pred hHHHHHHHHHhcCCC-------EEEEECCCccC------CCHHHHHHHHHcCCEE---EEEcCHHHHhCC--CCEEEECC
Confidence 455555554411254 58888777762 222222333321 111 123679999998 89999876
Q ss_pred CC
Q 007499 415 GV 416 (601)
Q Consensus 415 ~~ 416 (601)
.+
T Consensus 227 ~q 228 (306)
T PLN02527 227 IQ 228 (306)
T ss_pred cc
Confidence 54
No 263
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=58.53 E-value=11 Score=36.31 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=27.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|.+.+|||+|+|..|.-.+++|+++ | .++.+++.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 4559999999999998888888764 2 367777543
No 264
>PRK07236 hypothetical protein; Provisional
Probab=58.44 E-value=9.5 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
..+|+|+|||.||+..|..|...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC
Confidence 48899999999999999888763
No 265
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=58.40 E-value=9.6 Score=42.42 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 6799999999999999888765 443 388888874
No 266
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=58.36 E-value=36 Score=35.54 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=51.4
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCC-CCCcccCCCH
Q 007499 321 DQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD-FMGLREGASL 398 (601)
Q Consensus 321 ~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~-~~~~~~~~~L 398 (601)
+.+||++.. ++.++|- +..+|+ .-|++ .+++|+.+ ..++++-..+|....+ ..+..-..||
T Consensus 4 ~i~iVLVep~~~gNIG~---vARaMK-NfGl~------eL~LV~Pr-------~~~~eeA~a~A~gA~dile~A~i~~tL 66 (242)
T COG0565 4 NIRIVLVEPSHPGNIGS---VARAMK-NFGLS------ELRLVNPR-------AGLDEEARALAAGARDILENAKIVDTL 66 (242)
T ss_pred ccEEEEEcCCCCccHHH---HHHHHH-hCCcc------eEEEECCC-------CCCCHHHHHHhccchhhhccCeeecCH
Confidence 478887764 5566665 346677 68986 58988875 3355655555543222 1222235799
Q ss_pred HHHhcccCCcEEEeecCCC
Q 007499 399 LEVVRKVKPHVLLGLSGVG 417 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~ 417 (601)
.|+|.+ .+.+||+|+..
T Consensus 67 ~eAl~d--~~~v~aTtar~ 83 (242)
T COG0565 67 EEALAD--CDLVVATTARS 83 (242)
T ss_pred HHHhcC--CCEEEEecccc
Confidence 999998 89999999643
No 267
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=58.30 E-value=5 Score=43.19 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|+|+|||-||+..|..|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999875
No 268
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=58.29 E-value=9.5 Score=42.71 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~ 342 (601)
..+|+|+|||.||+..|..+.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHh
Confidence 4899999999999999888764
No 269
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=58.23 E-value=10 Score=38.62 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=27.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.|+|+|||-+|+.+|..|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 38999999999999998876 35 37999999833
No 270
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=57.18 E-value=11 Score=35.57 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 325 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 325 v~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
+|+|+|.+|+.++..|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999999864 1122358999999765
No 271
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=56.89 E-value=10 Score=40.17 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|||.||+..|-+|...- +.|+ ++.++|++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 67999999999999988876530 1254 57777773
No 272
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.30 E-value=12 Score=41.12 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||||+|+|.||+..|+.|... +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 4899999999999999998642 11 1368888875
No 273
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=56.24 E-value=10 Score=44.01 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3899999999999999988875 343 58888875
No 274
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.01 E-value=12 Score=37.32 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=26.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
|.+.++||+|+|..|.-.++.|+++ | .+|++++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 4459999999999998888887764 2 36888865
No 275
>PRK07233 hypothetical protein; Provisional
Probab=55.98 E-value=9 Score=40.82 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+|+|||-||+..|..|.+ .| .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RG-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEEeC
Confidence 68999999999999988765 34 257788776
No 276
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=55.80 E-value=25 Score=35.83 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
+..+.|++..+.. .. .+++|+|+|+.|...+.+.. ..|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak-----~~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAA-----AAGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHH-----HcCC------CEEEEECC
Confidence 3445566655443 45 89999999876654433322 2353 45887764
No 277
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=55.55 E-value=11 Score=41.93 Aligned_cols=33 Identities=33% Similarity=0.627 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 3799999999999999887764 343 68899875
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.50 E-value=22 Score=37.32 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 305 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 305 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
.+.|++..+.. .. ++++|.|+|+.|...+.+... .|. ++|+.+|+
T Consensus 158 a~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 158 AIHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 35555554433 45 899999998776655433332 343 46887776
No 279
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.47 E-value=9.1 Score=41.87 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 4899999999999988765521 1 1258888864
No 280
>PRK06823 ornithine cyclodeaminase; Validated
Probab=55.39 E-value=97 Score=33.21 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=65.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.++.++|+|.-+...++.++... . -++|+++|+. .++ ...+...+.+...+ .....+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~----~------i~~v~v~~r~----~~~--a~~~~~~~~~~~~~---v~~~~~~~~a 189 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVT----D------CRQLWVWGRS----ETA--LEEYRQYAQALGFA---VNTTLDAAEV 189 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----C------CCEEEEECCC----HHH--HHHHHHHHHhcCCc---EEEECCHHHH
Confidence 78999999998877777665531 2 2688888873 111 11111111111111 1124689999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHHh
Q 007499 402 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAF 456 (601)
Q Consensus 402 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~tpeda~ 456 (601)
|+. .|+++-+++. .-+|..++++. .-.|-+...-++ +.|+.++-..
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~~-------G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQP-------GTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcCC-------CcEEEecCCCCcccccCCHHHHh
Confidence 988 8999976543 46788888763 445777865443 6699987643
No 281
>PRK06847 hypothetical protein; Provisional
Probab=55.30 E-value=11 Score=39.56 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+|+|+|||.||+..|.+|..
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 679999999999999988764
No 282
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.28 E-value=12 Score=40.90 Aligned_cols=35 Identities=37% Similarity=0.642 Sum_probs=27.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|.+.+++|+|+|.+|.++|+.|... | .+++++|++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 3448999999999999999888764 3 256777764
No 283
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=55.18 E-value=12 Score=30.91 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=23.7
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 326 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 326 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
|+|||.+|+..|..|.+. | .+|.+++++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 789999999999888753 3 489999987443
No 284
>PRK08163 salicylate hydroxylase; Provisional
Probab=55.07 E-value=11 Score=40.13 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+|+|+|||.||+..|-.|..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 689999999999999987754
No 285
>PLN02268 probable polyamine oxidase
Probab=54.82 E-value=4.9 Score=43.56 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~ 343 (601)
+|+|+|||-||+..|..|.++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999999764
No 286
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=54.54 E-value=96 Score=33.63 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=83.5
Q ss_pred HHhCCCeE-EeeCCCChHHHHHHHHhccCCcccc-CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHH
Q 007499 260 HARWPKAI-FEDFQMKWAFETLERYRKRFCMFND-DIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVL 337 (601)
Q Consensus 260 ~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~FnD-DiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA 337 (601)
...|.+++ +..+...... .+.+| ..+|+.|- |-.---+=+|+=++.-.+..|..++. .+|+++|-+.- +++
T Consensus 98 ls~y~D~iv~R~~~~~~~~-~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~g---l~ia~vGD~~~--~v~ 170 (334)
T PRK01713 98 LGRMYDAIEYRGFKQSIVN-ELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSE---ISYVYIGDARN--NMG 170 (334)
T ss_pred HHHhCCEEEEEcCchHHHH-HHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCC---cEEEEECCCcc--CHH
Confidence 35568888 8877655443 33444 46899993 33344556677777766777766777 99999998753 478
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhcccccc-CCCCCcccCCCHHHHhcccCCcEEEee
Q 007499 338 KMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP-GDFMGLREGASLLEVVRKVKPHVLLGL 413 (601)
Q Consensus 338 ~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~-~~~~~~~~~~~L~e~V~~vkptvLIG~ 413 (601)
+-++.++. +-|+ +|.++-.+++.-.. ++-+.-+.+++.. .. .....++.+++++ .||+.-.
T Consensus 171 ~Sl~~~~~-~~g~-------~v~~~~P~~~~p~~--~~~~~~~~~~~~~g~~---~~~~~d~~~a~~~--aDvVyt~ 232 (334)
T PRK01713 171 NSLLLIGA-KLGM-------DVRICAPKALLPEA--SLVEMCEKFAKESGAR---ITVTDDIDKAVKG--VDFVHTD 232 (334)
T ss_pred HHHHHHHH-HcCC-------EEEEECCchhcCCH--HHHHHHHHHHHHcCCe---EEEEcCHHHHhCC--CCEEEEc
Confidence 87777766 5675 58888888773221 1111112233211 10 1124679999998 8999864
No 287
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=54.40 E-value=31 Score=35.61 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||.|+|+|..|.++|..|... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 42 57778875
No 288
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=54.36 E-value=1.1e+02 Score=35.10 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=108.5
Q ss_pred hhhhHhHHHHHHHHHHhC-CCe-E-EeeCC--CChHHHHHHHHhccC----------Ccc----ccCcchhHHHHHHHHH
Q 007499 246 EEYLSIVDEFMEAVHARW-PKA-I-FEDFQ--MKWAFETLERYRKRF----------CMF----NDDIQGTAGVALAGLL 306 (601)
Q Consensus 246 ~~Y~~~vdefv~av~~~~-P~~-l-~EDf~--~~~Af~iL~ryr~~~----------~~F----nDDiQGTaav~LAgll 306 (601)
.|-..+.-.||..+.+.- |.. + =+|++ ...---+++.|+... +.- |+-.-.|+-=+..++=
T Consensus 158 nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 158 NEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 344445555666555532 544 4 67766 222234788887642 222 3333334433333333
Q ss_pred HHHHHhC--CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhh-ccc
Q 007499 307 GTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-PFA 383 (601)
Q Consensus 307 ~Alr~~g--~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~-~fa 383 (601)
+=+.-.+ +.++. .||++-|-|--|.-.|..|.+... +-|-+-|++|.|.... .++..+. .++
T Consensus 238 ~~~~~~~~~~~~kg---kr~~i~G~Gnv~~~aa~~l~~~G~-----------kvvavsD~~G~l~np~-Gid~~eL~~~~ 302 (514)
T KOG2250|consen 238 AILNDANGKKGIKG---KRVVIQGFGNVGGHAAKKLSEKGA-----------KVVAVSDSKGVLINPD-GIDIEELLDLA 302 (514)
T ss_pred HHHHhccCCCCcCc---eEEEEeCCCchHHHHHHHHHhcCC-----------EEEEEEcCceeEECCC-CCCHHHHHHHH
Confidence 3233333 66677 999999999999888888776532 5688899999998754 3443332 222
Q ss_pred cccC---CCCC---cccC----CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007499 384 KDPG---DFMG---LREG----ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 452 (601)
Q Consensus 384 ~~~~---~~~~---~~~~----~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tp 452 (601)
.... .++. .... .-+.--|. |.|+++=|.++ +..|.+=.+...+++| |+|.==|| ||. -.+
T Consensus 303 ~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT---peA 374 (514)
T KOG2250|consen 303 DEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT---PEA 374 (514)
T ss_pred HhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC---hhH
Confidence 1110 0100 0000 00122233 48999999997 8899888888765555 89998999 664 344
Q ss_pred HHHhc
Q 007499 453 ADAFK 457 (601)
Q Consensus 453 eda~~ 457 (601)
.++++
T Consensus 375 ~~vle 379 (514)
T KOG2250|consen 375 DEVLE 379 (514)
T ss_pred HHHHH
Confidence 56665
No 289
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=54.36 E-value=12 Score=40.50 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=28.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 369 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 369 (601)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 4699999999999999988764 43 577788765543
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=54.33 E-value=12 Score=41.44 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 899999999999999988864 343 68888874
No 291
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=54.24 E-value=9.7 Score=40.72 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+|+|+|||.||+..|-.|..
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhc
Confidence 679999999999999988865
No 292
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=54.21 E-value=10 Score=40.15 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=24.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
|+|+|||.||+.+|..+.. .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 8999999999999977653 354 688899764
No 293
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=54.13 E-value=37 Score=32.37 Aligned_cols=114 Identities=23% Similarity=0.289 Sum_probs=64.8
Q ss_pred cccccCCCCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHH
Q 007499 182 RILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA 261 (601)
Q Consensus 182 rILGLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~ 261 (601)
||||+ |.|....|..+-... + --|..+|.|+=+-. .+....+....+.+++.+.+..
T Consensus 1 rILGI-DPGl~~~G~av~~~~--------~---~~~~~~~~g~i~t~-----------~~~~~~~rl~~I~~~l~~~i~~ 57 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQE--------G---RKLIYLASGVIRTS-----------SDAPLPSRLKTIYDGLNEVIDQ 57 (154)
T ss_pred CEEEE-ccCcCceEEEEEEee--------C---CeEEEEEeeEEECC-----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 67887 888765555443220 1 23556777753221 1222355566667766666655
Q ss_pred hCCCeE-Eee-CCCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCC--CceEEEeCcchHHH
Q 007499 262 RWPKAI-FED-FQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFA--DQKIVVVGAGSAGL 334 (601)
Q Consensus 262 ~~P~~l-~ED-f~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~--~~riv~~GAGsAg~ 334 (601)
--|+.+ .|+ |-+.|.-..+.- .-+-..++.++...|.++.+.+ +.|-.+.|.|.|.-
T Consensus 58 ~~Pd~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 58 FQPDVVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred hCCCEEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 459988 999 434453322211 1123456666667777765443 36778899998875
No 294
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=54.04 E-value=72 Score=34.45 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=60.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCC
Q 007499 318 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 318 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
++...++-|+|.|..|..+|+.+... |+ +|...|++.. ++..+.+- ..+.+
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~F-----gm-------~v~y~~~~~~--------~~~~~~~~---------~~y~~ 193 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGF-----GM-------KVLYYDRSPN--------PEAEKELG---------ARYVD 193 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCCC--------hHHHhhcC---------ceecc
Confidence 45569999999999999999998733 32 5776776532 11111110 12344
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 398 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
|.|.+++ .|+|+-..- .-++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk----~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK----PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC----CCeEEEECCC
Confidence 9999988 799885421 13789999999993 4556655554
No 295
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=54.01 E-value=14 Score=40.25 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.||||+|+|.||+..|..|... |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999887552 21 126888888653
No 296
>PRK09126 hypothetical protein; Provisional
Probab=53.71 E-value=11 Score=39.85 Aligned_cols=21 Identities=48% Similarity=0.673 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
-.|+|+|||.||+..|..|..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 679999999999999988765
No 297
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.55 E-value=41 Score=37.28 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=23.0
Q ss_pred HHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHH
Q 007499 308 TVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 308 Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 342 (601)
++.-....+.. .|++|+|-..-.+++++.|.+
T Consensus 293 ~~~~~~~~l~g---krv~i~g~~~~~~~la~~L~e 324 (435)
T cd01974 293 AMTDSHQYLHG---KKFALYGDPDFLIGLTSFLLE 324 (435)
T ss_pred HHHHHHHhcCC---CEEEEEcChHHHHHHHHHHHH
Confidence 33333344555 999999988888888888875
No 298
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=53.29 E-value=13 Score=41.39 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 489999999999999988887642 0 1368999985
No 299
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=53.24 E-value=12 Score=37.29 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.|+|+|||.||+..|-.|.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 38999999999999877643 454 5888888743
No 300
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=53.02 E-value=13 Score=42.42 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3899999999999999887754 342 48888864
No 301
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=52.98 E-value=14 Score=40.61 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=66.4
Q ss_pred ChhhhhHhHHHHHH--HHHHhCCCeE-EeeCCCChHHHHHHHHhccCCccccCcchhHH-HHHHHHHHHHHHhCCCCCCC
Q 007499 244 EGEEYLSIVDEFME--AVHARWPKAI-FEDFQMKWAFETLERYRKRFCMFNDDIQGTAG-VALAGLLGTVRAQGLSLTDF 319 (601)
Q Consensus 244 ~g~~Y~~~vdefv~--av~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaa-v~LAgll~Alr~~g~~l~dl 319 (601)
+|.-..+++++|++ ..++..|+.. -|+|+..-..++|+++.. =..|++-|-. .|...+..+++....+ .
T Consensus 213 ~G~v~~~ll~~ll~~pyf~~~pPKStGrE~F~~~~l~~~l~~~~~----~~~D~~aTlt~~TA~sI~~~i~~~~~~--~- 285 (364)
T PF03702_consen 213 SGKVNEELLDRLLSHPYFKRPPPKSTGREDFGLEWLQQILDKFSL----SPEDILATLTEFTAQSIADAIRRFPPQ--P- 285 (364)
T ss_dssp CS---HHHHHHHHTSHHHHS-SS----TTTSSHHHHHHHCTTSTT-----HHHHHHHHHHHHHHHHHHHHHHH-TT----
T ss_pred cCCCCHHHHHHHhcCccccCCCCCcCCccccCHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHhcCCC--C-
Confidence 56667788888886 4566668888 999977666666665544 2788888854 4555666788876654 4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.+|++.|.|+=+.-+-++|.+.+- + -+|...|.-|+
T Consensus 286 --~~v~v~GGGa~N~~L~~~L~~~l~---~-------~~v~~~~~~gi 321 (364)
T PF03702_consen 286 --DEVYVCGGGARNPFLMERLQERLP---G-------IPVKTTDELGI 321 (364)
T ss_dssp --EEEEEESGGGG-HHHHHHHHHH-T---T-------CEEEEGGGGTS
T ss_pred --ceEEEECCCcCCHHHHHHHHhhCC---C-------CEEecHHHcCC
Confidence 689999999999888777776543 1 25666666555
No 302
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=52.96 E-value=68 Score=33.90 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~ 365 (601)
.||.|+|+|..|-.|+.-|+.. | +. ..+|++.|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 6899999999998887777654 3 33 2578877773
No 303
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.93 E-value=53 Score=34.78 Aligned_cols=127 Identities=20% Similarity=0.331 Sum_probs=72.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
||.|+|+|..|..+|..+.. .|+ ...++++|++-=...+. .++.+.. +|-.+. .. ...+. +.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~~-~~~~~~-~i----~~~d~-~~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHGT-PFVKPV-RI----YAGDY-AD 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHccc-cccCCe-EE----eeCCH-HH
Confidence 79999999999999887764 344 25799999741101100 1122221 221111 00 11344 45
Q ss_pred hcccCCcEEEeecCCC---C-CC----------CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcEEE
Q 007499 402 VRKVKPHVLLGLSGVG---G-VF----------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 465 (601)
Q Consensus 402 V~~vkptvLIG~S~~~---g-~F----------t~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--Grai~ 465 (601)
+++ .|+.|=+.+.+ | .. =+++++.+.+ ++..-+|+-.+||. +....-+++.++ -+-+|
T Consensus 65 l~~--aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~vi 138 (308)
T cd05292 65 CKG--ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVI 138 (308)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHee
Confidence 666 67766333332 1 11 1356666643 78889999999997 577777776651 12366
Q ss_pred EcCCCCC
Q 007499 466 ASGSPFE 472 (601)
Q Consensus 466 AsGSPf~ 472 (601)
.+|.-.+
T Consensus 139 G~gt~LD 145 (308)
T cd05292 139 GSGTVLD 145 (308)
T ss_pred cccchhh
Confidence 7765553
No 304
>PLN02852 ferredoxin-NADP+ reductase
Probab=52.40 E-value=15 Score=41.81 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||+|+|||.||+..|..|... ..|. +|.++|+.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~---~~g~-------~Vtv~E~~ 60 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKA---HDGA-------RVDIIERL 60 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhh---CCCC-------eEEEEecC
Confidence 8999999999999999988753 1242 68888886
No 305
>PRK11445 putative oxidoreductase; Provisional
Probab=52.32 E-value=13 Score=39.37 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=23.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.|+|+|||.||...|..|... . ++.++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~------------~V~liE~~ 32 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M------------KVIAIDKK 32 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C------------CEEEEECC
Confidence 589999999999999877543 2 47777765
No 306
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=52.31 E-value=31 Score=35.85 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=69.4
Q ss_pred cCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHH--hCCCeEEeeCCCChHHHHHHHHh-
Q 007499 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA--RWPKAIFEDFQMKWAFETLERYR- 284 (601)
Q Consensus 208 gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~--~~P~~l~EDf~~~~Af~iL~ryr- 284 (601)
-||+ .+|+.+.+| ++..+++. +--.|+|.+.+++ ..|+. +.|+.-.+.+.|+
T Consensus 19 ~~I~---vvPl~I~~~--~~~y~D~~---------------~i~~~~~y~~~~~~~~~p~T-----S~ps~~~~~~~~~~ 73 (275)
T TIGR00762 19 YGIT---VVPLTVIID--GKTYRDGV---------------DITPEEFYEKLKESKELPKT-----SQPSPGEFLELYEK 73 (275)
T ss_pred cCCE---EEEEEEEEC--CEEeecCC---------------CCCHHHHHHHHHhcCCCCCc-----CCCCHHHHHHHHHH
Confidence 3777 999999886 34443321 1225677776654 23543 3333333333332
Q ss_pred -----ccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHH--HHHhcCCChhhhc
Q 007499 285 -----KRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA--AARMAGNNDAFAR 356 (601)
Q Consensus 285 -----~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~--~~~~~Gls~eeA~ 356 (601)
+++-++ |=+-.|.|-+++++...+.+.+ .+|-++=..+++.|.+.++..+ |. ++|.+.+|..
T Consensus 74 l~~~~~~vi~i------~iSs~lSgty~~a~~aa~~~~~---~~i~ViDS~~~s~~~g~~v~~a~~~~-~~G~s~~eI~ 142 (275)
T TIGR00762 74 LLEEGDEVLSI------HLSSGLSGTYQSARQAAEMVDE---AKVTVIDSKSASMGLGLLVLEAAKLA-EEGKSLEEIL 142 (275)
T ss_pred HHhCCCeEEEE------EcCCchhHHHHHHHHHHhhCCC---CCEEEECChHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 222222 2233466666666666666666 7899999999999998888775 44 6899988853
No 307
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=52.10 E-value=41 Score=34.76 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999998865 342 57777764
No 308
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=52.09 E-value=14 Score=39.57 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.+|+.+|..|... ..| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC-------CeEEEEeCC
Confidence 4699999999999999888763 113 378999986
No 309
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=52.00 E-value=14 Score=38.91 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
..|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 5699999999999999887753 4 3689999764
No 310
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.57 E-value=35 Score=35.40 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~ 365 (601)
++|.|+|+|..|..+|..|... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999887653 3 21 1367877763
No 311
>PRK07045 putative monooxygenase; Reviewed
Probab=51.45 E-value=14 Score=39.45 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
-+|+|+|||.||+..|-.|..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 579999999999999977765
No 312
>PRK06753 hypothetical protein; Provisional
Probab=51.40 E-value=13 Score=39.09 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~ 342 (601)
+|+|+|||.||+..|..|..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888764
No 313
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.92 E-value=15 Score=41.03 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
|...||+|+|+|-+|.++|+.|...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHC
Confidence 4458999999999999999998753
No 314
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=50.91 E-value=11 Score=39.84 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
+|||+|+|.||+-.|+.+..... ..-+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 58999999999988887754211 1247999997654
No 315
>PRK12831 putative oxidoreductase; Provisional
Probab=50.82 E-value=15 Score=41.06 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 48999999999999999888763 43 68888864
No 316
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=50.68 E-value=14 Score=40.84 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 799999999999998887753 34 368888875
No 317
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=50.49 E-value=13 Score=39.28 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|||.||+..|-.|.. .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977654 353 57777765
No 318
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=50.33 E-value=36 Score=36.09 Aligned_cols=106 Identities=13% Similarity=0.184 Sum_probs=62.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc-cCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~-~~~~~~~~~~~~L~e 400 (601)
.++.|+|+|.=|..-++.++.. ..+ ++|.+.|+. .+ ....+...+.+. .-+ .....+++|
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~f~~~~~~~~~~~---v~~~~~~~e 178 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD--HARAFAERFSKEFGVD---IRPVDNAEA 178 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHHhcCCc---EEEeCCHHH
Confidence 8899999999887776666552 122 678888873 11 122222222211 101 112468999
Q ss_pred HhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecC-CCCCccCCCHHHH
Q 007499 401 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMS-NPTMNAECTAADA 455 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLS-NPt~~aE~tpeda 455 (601)
+++. .||++-+++. ..+|..++++. .--|-++- +--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p-------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD-------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC-------CceEEecCCCCCCcccCCHHHH
Confidence 9988 8999976543 35678887763 22355543 2223568888743
No 319
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=50.32 E-value=16 Score=38.00 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998764 4 268888864
No 320
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.13 E-value=15 Score=38.68 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
.|+|+|||.+|+.+|..|.. .|. ++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999988764 342 6888888654
No 321
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=50.13 E-value=14 Score=41.76 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 459999999999999988765 354 588888863
No 322
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=49.74 E-value=9.4 Score=39.40 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
-.|+|+|||.||+..|..+.. .|+ ++.+++++.-+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~~ 56 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLAF 56 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCCC
Confidence 789999999999999877653 453 68889987544
No 323
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=49.59 E-value=55 Score=34.82 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=23.6
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhcC-CCCCeEEecC-CCCC
Q 007499 406 KPHVLLGLSGVGGVFNEEVLKAMRESD-SVKPAIFAMS-NPTM 446 (601)
Q Consensus 406 kptvLIG~S~~~g~Ft~evv~~Ma~~~-~erPIIFaLS-NPt~ 446 (601)
+-|++||+|..+. |++++..+.... ..-|+ ++++ ||.+
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~-IaIT~~~~s 166 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATT-IALSCNPDS 166 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeE-EEEECCCCC
Confidence 4699999997554 588888773322 22354 4555 5554
No 324
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=49.58 E-value=16 Score=38.69 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 799999999999998887764 34 368889985
No 325
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=49.56 E-value=14 Score=41.14 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.2
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 569999999999999987764
No 326
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.47 E-value=15 Score=45.49 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 4899999999999999998865 353 58888875
No 327
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=49.21 E-value=16 Score=42.76 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 3799999999999999988865 342 57788865
No 328
>PRK06834 hypothetical protein; Provisional
Probab=49.20 E-value=16 Score=41.04 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
++..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45889999999999999888765 454 467777653
No 329
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=49.09 E-value=14 Score=39.49 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~ 38 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGR 38 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 579999999999999977653 454 57888875
No 330
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=49.05 E-value=15 Score=38.99 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
++|.. -+|+|+|+|.-|.-+|.-|+.+++ ++|.++|.+
T Consensus 22 ~KL~~---SrVLVVG~GGLGsEVAKnLaLAGV-----------GsItIvDdD 59 (287)
T PTZ00245 22 QQLMH---TSVALHGVAGAAAEAAKNLVLAGV-----------RAVAVADEG 59 (287)
T ss_pred HHHhh---CeEEEECCCchHHHHHHHHHHcCC-----------CeEEEecCC
Confidence 44556 999999999999999998887655 689999987
No 331
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=48.71 E-value=42 Score=36.01 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
|.+.+|.|+|+|.-|-++|..|.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 3459999999999999999988753
No 332
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=48.70 E-value=16 Score=40.16 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.++|+|||.||+.+|..|.+ .| .++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999987764 34 368888875
No 333
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.69 E-value=15 Score=45.00 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=30.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC----ccccC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITK 370 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~ 370 (601)
..||+|+|+|.||+..|..|... |. ++.++|+. |++.-
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 39999999999999999988753 43 58888875 66543
No 334
>PRK06046 alanine dehydrogenase; Validated
Probab=48.60 E-value=1.2e+02 Score=32.27 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=62.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.++.|+|+|..|...++.+... .++ ++++++|++- . ........+.+.. .+. .....++.++
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~--~~~~~~~~~~~~~-~~~-v~~~~~~~~~ 191 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----S--SAEKFVERMSSVV-GCD-VTVAEDIEEA 191 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----H--HHHHHHHHHHhhc-Cce-EEEeCCHHHH
Confidence 7899999999887776655432 232 6899898851 1 1222222221110 000 0113578888
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHH
Q 007499 402 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADA 455 (601)
Q Consensus 402 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpeda 455 (601)
++ .|+++-++.. ..+|..++++. .-.|-++.- -..+.|+.++-.
T Consensus 192 l~---aDiVv~aTps~~P~~~~~~l~~-------g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 192 CD---CDILVTTTPSRKPVVKAEWIKE-------GTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred hh---CCEEEEecCCCCcEecHHHcCC-------CCEEEecCCCCCccccCCHHHH
Confidence 85 7998876542 35788888763 224667754 334789998743
No 335
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=48.55 E-value=14 Score=38.95 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 007499 324 IVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~ 343 (601)
|+|+|||.||+..|..|...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999888764
No 336
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=48.45 E-value=15 Score=43.61 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=60.0
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---c-----cCCCHHHHhcccCCcEEEEcCCCC
Q 007499 400 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---N-----AECTAADAFKHAGENIVFASGSPF 471 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~---~-----aE~tpeda~~wt~Grai~AsGSPf 471 (601)
++=+.++|+++|..+| .+.=-.++.+.+ . +-+|=|.+=+.||.+ + .+-|.++.+++.-. |+..-=.
T Consensus 413 ~l~~~~~~~~ilasNT-Ssl~i~~la~~~-~-~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk 486 (715)
T PRK11730 413 EVEQKVREDTILASNT-STISISLLAKAL-K-RPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGK 486 (715)
T ss_pred HHHhhCCCCcEEEEcC-CCCCHHHHHhhc-C-CCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCC
Confidence 4445578999997766 333334444444 2 555668888999974 2 33344444443211 1222123
Q ss_pred CceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHH
Q 007499 472 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 517 (601)
Q Consensus 472 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA 517 (601)
.||..+ ..||-.=|-..+|-+--++.+...- .|.+-+-+|.
T Consensus 487 ~pv~v~----d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 487 TPIVVN----DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred ceEEec----CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 445442 5688888888888766555454433 5666666554
No 337
>PRK07877 hypothetical protein; Provisional
Probab=48.37 E-value=27 Score=41.69 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCCh----------hhhccc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP----------AAAPFA 383 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~----------~k~~fa 383 (601)
.+|+. .||+|+|+| .|.-+|..|+.++ + ..+|.++|.+=+=. .+|+. .|..-+
T Consensus 103 ~~L~~---~~V~IvG~G-lGs~~a~~LaraG-----v-----vG~l~lvD~D~ve~---sNLnRq~~~~~diG~~Kv~~a 165 (722)
T PRK07877 103 ERLGR---LRIGVVGLS-VGHAIAHTLAAEG-----L-----CGELRLADFDTLEL---SNLNRVPAGVFDLGVNKAVVA 165 (722)
T ss_pred HHHhc---CCEEEEEec-HHHHHHHHHHHcc-----C-----CCeEEEEcCCEEcc---cccccccCChhhcccHHHHHH
Confidence 44556 999999998 8888888887653 2 15899999873322 23443 111111
Q ss_pred cc-----cCCC--CCcc---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 384 KD-----PGDF--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 384 ~~-----~~~~--~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
+. .+.. .... ...++.+.+++ .|++|-++- +.=++-+|...|. ....|+|++.+
T Consensus 166 ~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~-~~~iP~i~~~~ 229 (722)
T PRK07877 166 ARRIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAAR-ARRIPVLMATS 229 (722)
T ss_pred HHHHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEcC
Confidence 10 0000 0000 11356666665 688887664 3334555555543 55788888774
No 338
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=48.05 E-value=16 Score=38.96 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=24.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999877654 465 46677754
No 339
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=47.91 E-value=17 Score=42.30 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
..|+|+|||.+|+.+|..|.. .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999998865 353 699999874
No 340
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=47.86 E-value=50 Score=37.25 Aligned_cols=139 Identities=9% Similarity=0.151 Sum_probs=73.0
Q ss_pred cCChhhHHHHHhcCCCCCeeEE-EEecCccccccCCCCCccccccc-hhhhHHHh-----hcCCCCCceecEEeeccCCc
Q 007499 154 AKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPI-GKLDVYVA-----AAGINPQRILPVMLDVGTNN 226 (601)
Q Consensus 154 ~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~i-GKl~LY~a-----~gGI~P~~~lPV~LDvGTnN 226 (601)
..|-..+.++|... .++++ +.+.++.+=-|=..+...+-|.+ +...++.+ ==||. .++..
T Consensus 203 ~gd~~elk~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP---~~~~~------- 269 (475)
T PRK14478 203 AGELWQVKPLLDRL---GIRVVACITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIP---FFEGS------- 269 (475)
T ss_pred CCCHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCC---EEecC-------
Confidence 35656777888764 45555 45666666555555555555544 22222321 01554 22211
Q ss_pred hhcccCccccccccCCCChhhhhHhHHHHHHHHHHhC-CCeEEeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHH
Q 007499 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGL 305 (601)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~l~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgl 305 (601)
++|+ +-.++|++.+.+.+ ..-+-++. ...+-.++++.|.+ +
T Consensus 270 --------p~G~-----------~~T~~~l~~la~~~~~~~~~~~~-~~~~e~~i~~e~~~------------------~ 311 (475)
T PRK14478 270 --------FYGI-----------EDTSDSLRQIARLLVERGADAEL-VERTEALIAEEEAK------------------A 311 (475)
T ss_pred --------CCcH-----------HHHHHHHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHH------------------H
Confidence 1222 23677777777766 11111110 11233445554444 3
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 007499 306 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNN 351 (601)
Q Consensus 306 l~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls 351 (601)
..++......|.. .|++|+|.+.-..++++.+.+ .|+.
T Consensus 312 ~~~l~~~~~~l~G---k~vaI~~~~~~~~~la~~l~E-----lGm~ 349 (475)
T PRK14478 312 WAALEPYRPRLEG---KRVLLYTGGVKSWSVVKALQE-----LGME 349 (475)
T ss_pred HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE
Confidence 4444444445556 899999888888888887653 5764
No 341
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=47.82 E-value=32 Score=38.83 Aligned_cols=105 Identities=25% Similarity=0.406 Sum_probs=67.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC----ccccCCCCCCChhhhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKERKNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
.+|+|+|||-||++-|-.|.+..- + -.+.+++++ |++.+-. .+ +-
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p-----~-----~~i~lfE~~~r~GG~l~T~~-----------~~----------G~ 49 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGP-----D-----VEVTLFEADDRVGGLLRTVK-----------ID----------GF 49 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCC-----C-----CcEEEEecCCCCCceEEEEe-----------eC----------CE
Confidence 379999999999999999887531 1 247777775 3333210 00 00
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc-CCcE-EEEcCCCCCcee
Q 007499 398 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA-GENI-VFASGSPFENVD 475 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt-~Gra-i~AsGSPf~pv~ 475 (601)
+. ...|+.++.. .+++++.+. |+-.|+-+.|. .++. ||.
T Consensus 50 ~~----e~G~~~f~~~-------~~~~l~li~-------------------eLGled~l~~~~~~~~~i~~--------- 90 (444)
T COG1232 50 LF----ERGPHHFLAR-------KEEILDLIK-------------------ELGLEDKLLWNSTARKYIYY--------- 90 (444)
T ss_pred EE----eechhheecc-------hHHHHHHHH-------------------HhCcHHhhccCCcccceEee---------
Confidence 11 1235556543 278999884 78889888876 4444 444
Q ss_pred cCCCeeeecccccccccchhhHHH
Q 007499 476 LGNGKIGHVNQANNMYLFPGIGLG 499 (601)
Q Consensus 476 ~~~G~~~~p~Q~NN~~iFPGiglG 499 (601)
+||.+.....| .+-+|.+-..
T Consensus 91 --~gkl~p~P~~~-i~~ip~~~~~ 111 (444)
T COG1232 91 --DGKLHPIPTPT-ILGIPLLLLS 111 (444)
T ss_pred --CCcEEECCccc-eeecCCcccc
Confidence 37888777776 9989977553
No 342
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=47.57 E-value=13 Score=39.83 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 469999999999999987754 454 57777765
No 343
>PRK07588 hypothetical protein; Provisional
Probab=47.51 E-value=16 Score=38.90 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~ 342 (601)
+|+|+|+|.||+..|-.|..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999987764
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.47 E-value=22 Score=39.42 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~ 342 (601)
.++++|+|+|.+|+.+|+.|.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3899999999999999888764
No 345
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=47.14 E-value=21 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 369 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 369 (601)
|+|+|||.||+.+|..|.+. ..|+ +|.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCCC
Confidence 79999999999999777653 1243 578888765443
No 346
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=47.06 E-value=20 Score=41.11 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=22.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||+|+|||.+|+..|+.|++ +|+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e-----~g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE-----EGL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH-----TT--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHH-----CCC-------CCeEEecC
Confidence 699999999999999998875 465 35566654
No 347
>PRK08013 oxidoreductase; Provisional
Probab=46.98 E-value=17 Score=39.14 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=24.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 579999999999999877654 465 46667764
No 348
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=46.83 E-value=19 Score=39.30 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=30.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
|++|=||++|||..|--++.||+..++ ++|-+||-+-+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~-----------qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGV-----------QKIRIVDFDQV 109 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcC-----------ceEEEechhhc
Confidence 444999999999999999999987554 57888887644
No 349
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=46.75 E-value=16 Score=40.09 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|||.||...|-.+.. .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 469999999999999988754 454 46666654
No 350
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=46.73 E-value=17 Score=41.36 Aligned_cols=32 Identities=19% Similarity=0.609 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|+|..|+++|..|.. .|+ ++.++|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 469999999999999998875 354 58888875
No 351
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=46.62 E-value=16 Score=38.27 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=23.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
|+|+|||.||+-.|..|.. .|+ ++.++|++-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999977764 353 466777763
No 352
>PLN02463 lycopene beta cyclase
Probab=46.49 E-value=16 Score=40.80 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 469999999999999987754 454 57777774
No 353
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=46.29 E-value=17 Score=38.23 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.|+|+|||-+|+.+|..|.+. | .++.++|++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 489999999999999888752 4 2588888763
No 354
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=46.28 E-value=17 Score=44.86 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 3799999999999999988864 353 58888865
No 355
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.22 E-value=16 Score=40.94 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.|+|+|+|.+|+++|..+.. .|+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 469999999999999999875 354 58889876
No 356
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=46.22 E-value=21 Score=36.98 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 369 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 369 (601)
--++|+|||+||+..|..|.+. |+ ++.+++++=-+.
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~G 53 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSPG 53 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-B
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCCC
Confidence 5699999999999999877764 54 688899874443
No 357
>PLN02676 polyamine oxidase
Probab=46.16 E-value=38 Score=38.15 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|+|+|||.+|+..|..|...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999988763
No 358
>PRK08244 hypothetical protein; Provisional
Probab=45.96 E-value=17 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
..|+|+|||.+|+..|-.|...
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 5699999999999999887643
No 359
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=45.76 E-value=21 Score=42.33 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~-----~G~-------~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAK-----RGY-------DVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 4899999999999999988865 343 68889874
No 360
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=45.75 E-value=30 Score=30.76 Aligned_cols=94 Identities=20% Similarity=0.168 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHhcccCC
Q 007499 328 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKP 407 (601)
Q Consensus 328 GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkp 407 (601)
|.|..|.+++++|...-. .-++ +=+.++||++++... +.....+. ....++.+.++..++
T Consensus 1 G~G~VG~~l~~~l~~~~~-~~~~------~v~~v~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 60 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQE-RIDL------EVVGVADRSMLISKD-------WAASFPDE------AFTTDLEELIDDPDI 60 (117)
T ss_dssp --SHHHHHHHHHHHHTHH-HCEE------EEEEEEESSEEEETT-------HHHHHTHS------CEESSHHHHHTHTT-
T ss_pred CCCHHHHHHHHHHHhCcc-cCCE------EEEEEEECCchhhhh-------hhhhcccc------cccCCHHHHhcCcCC
Confidence 789999999999987532 1022 346788888544433 11111111 124679999998889
Q ss_pred cEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007499 408 HVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 447 (601)
Q Consensus 408 tvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~ 447 (601)
|++|=+++ +...++-+.+.+. +...+|- +|....
T Consensus 61 dvvVE~t~-~~~~~~~~~~~L~---~G~~VVt--~nk~al 94 (117)
T PF03447_consen 61 DVVVECTS-SEAVAEYYEKALE---RGKHVVT--ANKGAL 94 (117)
T ss_dssp SEEEE-SS-CHHHHHHHHHHHH---TTCEEEE--S-HHHH
T ss_pred CEEEECCC-chHHHHHHHHHHH---CCCeEEE--ECHHHh
Confidence 99999954 5555555555553 2455554 444443
No 361
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=45.68 E-value=29 Score=37.26 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=33.6
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 292 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 292 DDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
|+..+.-+=-+|.-+.+.......... .+++|+|+|+.|+..+.+.. ..|- ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~---~~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPG---GTVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCC
Confidence 334444444444444442333333334 59999999999976632222 2454 57998876
No 362
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.66 E-value=17 Score=39.86 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999998887653 4 4799999864
No 363
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=45.42 E-value=20 Score=38.52 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=24.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~ 34 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERR 34 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcC
Confidence 689999999999999877754 464 35666655
No 364
>PRK13938 phosphoheptose isomerase; Provisional
Probab=45.38 E-value=61 Score=32.45 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=18.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAA 345 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~ 345 (601)
.||.|+|.|..| -+|..+..-|.
T Consensus 46 ~rI~i~G~G~S~-~~A~~fa~~L~ 68 (196)
T PRK13938 46 ARVFMCGNGGSA-ADAQHFAAELT 68 (196)
T ss_pred CEEEEEeCcHHH-HHHHHHHHHcC
Confidence 899999999987 66776666553
No 365
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=45.34 E-value=44 Score=34.63 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=21.9
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 326 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 326 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|+|.|..|..+|..|+.. | .+++++|++
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G-------~~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----G-------HPVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----C-------CeEEEEeCC
Confidence 689999999999988753 4 257888874
No 366
>PRK06185 hypothetical protein; Provisional
Probab=45.20 E-value=18 Score=38.69 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
..|+|+|||.+|+..|-.|.. .|+ ++.++|++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 679999999999999877653 464 477777753
No 367
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=45.03 E-value=17 Score=36.32 Aligned_cols=110 Identities=20% Similarity=0.342 Sum_probs=65.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccc-cCCCCCcccCCCHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLLE 400 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~-~~~~~~~~~~~~L~e 400 (601)
||+|+||||+- ...++...+...+.++ .+.|+|+|.+- .| +.+...-+.+++. ..++. .....++.|
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l~----~~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~-v~~ttd~~e 69 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEELS----GSEIVLMDIDE----ERLEIVERLARRMVEEAGADLK-VEATTDRRE 69 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTST----EEEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSE-EEEESSHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccCC----CcEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEeCCHHH
Confidence 79999999985 4456666555344454 36899999862 22 1111122233322 12221 123578999
Q ss_pred HhcccCCcEEE---------------------eecC-------CCCCCC--------HHHHHHhhhcCCCCCeEEecCCC
Q 007499 401 VVRKVKPHVLL---------------------GLSG-------VGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 444 (601)
Q Consensus 401 ~V~~vkptvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~~erPIIFaLSNP 444 (601)
|++. .|.+| |+-+ .+|.|. .|+.+.|. ++|+.--||=.+||
T Consensus 70 Al~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~-~~~PdAw~iNytNP 146 (183)
T PF02056_consen 70 ALEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIE-ELCPDAWLINYTNP 146 (183)
T ss_dssp HHTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHH-HHTTTSEEEE-SSS
T ss_pred HhCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEeccCh
Confidence 9998 78887 2222 123222 47888884 58899999999999
Q ss_pred CC
Q 007499 445 TM 446 (601)
Q Consensus 445 t~ 446 (601)
..
T Consensus 147 ~~ 148 (183)
T PF02056_consen 147 MG 148 (183)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 368
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.91 E-value=18 Score=41.31 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 59999999999999877754 24 3688888753
No 369
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=44.79 E-value=14 Score=37.70 Aligned_cols=92 Identities=26% Similarity=0.321 Sum_probs=54.0
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 393 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~ 393 (601)
++|.+ -|++++|+|.-|.-++..|+.+.+ ++++++|.+ +- +++.-|+.|-+...+. +.+
T Consensus 26 ~~l~~---s~vlvvG~GglG~~~~~~la~aGv-----------g~l~i~D~d---~v---~~snL~rq~~~~~~di-g~~ 84 (254)
T COG0476 26 QKLKD---SRVLVVGAGGLGSPAAKYLALAGV-----------GKLTIVDFD---TV---ELSNLQRQFLFTEADV-GKP 84 (254)
T ss_pred HHHhh---CCEEEEecChhHHHHHHHHHHcCC-----------CeEEEEcCC---cc---cccccCceeeeccccc-CCc
Confidence 45556 999999999999999998887644 569999986 22 2333333333322221 111
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007499 394 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 428 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 428 (601)
...+..+.++.+.|.+-+=.-. ..++++.+...
T Consensus 85 Ka~~a~~~l~~ln~~v~v~~~~--~~l~~~~~~~~ 117 (254)
T COG0476 85 KAEVAAKALRKLNPLVEVVAYL--ERLDEENAEEL 117 (254)
T ss_pred HHHHHHHHHHHhCCCCeEEEee--cccChhhHHHH
Confidence 1123445677777877653332 22555655443
No 370
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=44.74 E-value=2e+02 Score=28.24 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCCeE-EeeCCCChHHHHHHHHhcc-CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc
Q 007499 253 DEFMEAVHARWPKAI-FEDFQMKWAFETLERYRKR-FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG 330 (601)
Q Consensus 253 defv~av~~~~P~~l-~EDf~~~~Af~iL~ryr~~-~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GAG 330 (601)
|++++++.+..|+.+ .-|.+..- ..++ +++.. --.++ +|+-...+.+.++|--.. .. ..|+|.|=|
T Consensus 2 ~~~~~~l~~~l~d~iiv~d~G~~~-~~~~-~~~~~~~~~~~---~gsmG~~lpaAiGa~la~----~~---~Vv~i~GDG 69 (181)
T TIGR03846 2 IDAIRAIASYLEDELVVSNIGVPS-KELY-AIRDRPLNFYM---LGSMGLASSIGLGLALAT----DR---TVIVIDGDG 69 (181)
T ss_pred HHHHHHHHHhCCCCEEEecCCHhH-HHHH-hhhcCCCCeee---ccccccHHHHHHHHHHcC----CC---cEEEEEcch
Confidence 578889999889887 99988643 2332 33211 11222 788777787777765443 34 678899999
Q ss_pred hHHHHHHHHHHH
Q 007499 331 SAGLGVLKMAVQ 342 (601)
Q Consensus 331 sAg~GiA~ll~~ 342 (601)
+..+++.++...
T Consensus 70 ~f~m~~~el~ta 81 (181)
T TIGR03846 70 SLLMNLGVLPTI 81 (181)
T ss_pred HHHhhhhHHHHH
Confidence 999998666554
No 371
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=44.59 E-value=22 Score=32.64 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
|+|+|+|+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888763 2 4688888876
No 372
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=44.53 E-value=15 Score=40.27 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=30.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cC--CChhhhcC----eEEEEecCccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARM-AG--NNDAFARN----KFFLLDKDGLI 368 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~-~G--ls~eeA~~----~i~lvD~~GLi 368 (601)
++|+|+|||-||+..|..|.++.... .| +..=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999997753100 02 45556665 45555444543
No 373
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=44.47 E-value=20 Score=40.77 Aligned_cols=103 Identities=14% Similarity=0.008 Sum_probs=54.4
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccCC-----CHHHHhcccCCcEEE-EcCCCCCce
Q 007499 404 KVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVF-ASGSPFENV 474 (601)
Q Consensus 404 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~---~aE~-----tpeda~~wt~Grai~-AsGSPf~pv 474 (601)
..+|+++|...+ ..++.+-+..-. .+-+|=+-+-+-||.+ +.|+ |.++++++.. .++ .-| -.||
T Consensus 111 ~~~~~ailasnt--Stl~i~~la~~~-~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lg--k~pv 183 (507)
T PRK08268 111 IVSPDCILATNT--SSLSITAIAAAL-KHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWG--KTPV 183 (507)
T ss_pred hCCCCcEEEECC--CCCCHHHHHhhc-CCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcC--CceE
Confidence 347888886433 123333233221 1344447777788765 3333 2344443221 010 011 0122
Q ss_pred ecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHH
Q 007499 475 DLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 517 (601)
Q Consensus 475 ~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA 517 (601)
.. | ..||-.+|-..+|.+.=+..+...--++.+-+..+.
T Consensus 184 ~v--~--d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 184 RA--K--DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred Ee--c--CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22 1 246778999999988888888776667666666554
No 374
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=44.46 E-value=21 Score=40.03 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999988764 343 58888865
No 375
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=44.45 E-value=18 Score=40.49 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 315 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 315 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.|++ -+|+++|+|..|.-++..|+..++ ++|.++|.+
T Consensus 17 ~L~~---s~VlliG~gglGsEilKNLvL~GI-----------g~~tIvD~~ 53 (425)
T cd01493 17 ALES---AHVCLLNATATGTEILKNLVLPGI-----------GSFTIVDGS 53 (425)
T ss_pred HHhh---CeEEEEcCcHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 3455 999999999999989888876544 689999986
No 376
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=44.20 E-value=21 Score=39.01 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999987765 34 4699999864
No 377
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=44.17 E-value=1.2e+02 Score=33.54 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=69.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC-CCC-----CCChhhhcccc--ccCCCCCc
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERK-----NLDPAAAPFAK--DPGDFMGL 392 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~-~r~-----~l~~~k~~fa~--~~~~~~~~ 392 (601)
..||.++|+|.=|..||.++-.--. +.+.-+..=|+|.++.. +.. ++. +-+++...|.. +-++ ..
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~--i~~~~~~L~eiIN~~heN~KYlpg~~lP~--Nv 93 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE--INGEAEKLTEIINSRHENVKYLPGIKLPE--NV 93 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc--cCChhHHHHHHhccccccccccCCccCCC--Ce
Confidence 4899999999999999999987533 34444555689988764 111 010 11112223322 1111 01
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007499 393 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 442 (601)
Q Consensus 393 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 442 (601)
.-..+|.|++++ +|+||=+ .|--|+..+++.+.....++..-..|+
T Consensus 94 vAv~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk~~~~aISL~ 139 (372)
T KOG2711|consen 94 VAVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVKPGATAISLI 139 (372)
T ss_pred EecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccCCCCeEEEee
Confidence 124689999999 8998843 478899999999976444455444443
No 378
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=44.15 E-value=21 Score=38.24 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|+|+|||-+|+.+|..|.. .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988764 24 368889886
No 379
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=44.13 E-value=64 Score=38.05 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCCeEEeeCCCC----hHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEe
Q 007499 252 VDEFMEAVHARWPKAIFEDFQMK----WAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVV 327 (601)
Q Consensus 252 vdefv~av~~~~P~~l~EDf~~~----~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~ 327 (601)
-++|++.++.++-+=+.||.+.. =--.+++||..++--|+-... .++.|-. ..++ .||+++
T Consensus 71 ~~~V~Eli~~L~~nGFVrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~---akVlVl 135 (637)
T TIGR03693 71 QKRVFEIGEILYKNGFVRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSRN---AKILAA 135 (637)
T ss_pred HHHHHHHHHHHHhCCceeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhc---ccEEEE
Confidence 56677777777755446665422 223478999988755443221 1122221 1256 999999
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc-cCCC--CC--cccCCCHHHHh
Q 007499 328 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDF--MG--LREGASLLEVV 402 (601)
Q Consensus 328 GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~-~~~~--~~--~~~~~~L~e~V 402 (601)
|.|..|.-+...|+ +.|+ .+|..+|.+=..+. ...+-+. .+-|++ .++. .. .....++.+++
T Consensus 136 G~Gg~~s~lv~sL~-----~sG~------~~I~~vd~D~v~SN-lnRIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~ev~ 202 (637)
T TIGR03693 136 GSGDFLTKLVRSLI-----DSGF------PRFHAIVTDAEEHA-LDRIHEL-AEIAEETDDALLVQEIDFAEDQHLHEAF 202 (637)
T ss_pred ecCchHHHHHHHHH-----hcCC------CcEEEEeccccchh-hhHHHHH-HHHHHHhCCCCceEeccCCcchhHHHhh
Confidence 99987766655444 4576 57988877644321 1111122 333433 1111 00 11235688888
Q ss_pred cccCCcEEEeecCCCCC
Q 007499 403 RKVKPHVLLGLSGVGGV 419 (601)
Q Consensus 403 ~~vkptvLIG~S~~~g~ 419 (601)
+. -|++|=+|..+..
T Consensus 203 ~~--~DiVi~vsDdy~~ 217 (637)
T TIGR03693 203 EP--ADWVLYVSDNGDI 217 (637)
T ss_pred cC--CcEEEEECCCCCh
Confidence 77 4888877765443
No 380
>PRK08219 short chain dehydrogenase; Provisional
Probab=44.05 E-value=58 Score=31.19 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.9
Q ss_pred CCHHHHhccc-CCcEEEeecCCC
Q 007499 396 ASLLEVVRKV-KPHVLLGLSGVG 417 (601)
Q Consensus 396 ~~L~e~V~~v-kptvLIG~S~~~ 417 (601)
.++.++++.+ ++|++|-+.+..
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 60 EAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 4577777655 689999887654
No 381
>PRK07538 hypothetical protein; Provisional
Probab=43.99 E-value=20 Score=38.80 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~ 342 (601)
+|+|+|||.||+..|-.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999988877654
No 382
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=43.69 E-value=20 Score=39.18 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
.|+|+|+|.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 489999999999999887653 4 36889998
No 383
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.68 E-value=23 Score=41.12 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=81.5
Q ss_pred CCChhhhhHhHHHHHHHHHHhCCCeE---EeeCCCChHHHHHHHHhcc------CCccccCcchhHHHHHHHHHHHHH--
Q 007499 242 RLEGEEYLSIVDEFMEAVHARWPKAI---FEDFQMKWAFETLERYRKR------FCMFNDDIQGTAGVALAGLLGTVR-- 310 (601)
Q Consensus 242 R~~g~~Y~~~vdefv~av~~~~P~~l---~EDf~~~~Af~iL~ryr~~------~~~FnDDiQGTaav~LAgll~Alr-- 310 (601)
+++|=.-..-.+ |.+.+++.-.+-+ -=..+...-.+++++.... +|-+-|=++ ..+.+|
T Consensus 157 ~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~---------~~~~lreI 226 (588)
T COG1086 157 KIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKD---------LNGQLREI 226 (588)
T ss_pred EEeceeeechhH-HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH---------hccccccC
Confidence 344433333345 6666655555532 5555666666777776543 344444222 112222
Q ss_pred ----HhCCCC---------CCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 311 ----AQGLSL---------TDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 311 ----~~g~~l---------~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.-|++. ..+++++|+|-|| ||.|-.++++|++. + -++|.++|++=. ++.
T Consensus 227 ~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~------~~~ 289 (588)
T COG1086 227 EIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY------KLY 289 (588)
T ss_pred CHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH------HHH
Confidence 112221 1234599999998 68898888888874 2 268999988521 233
Q ss_pred hhhhccccc--cCC----CCCcccCCCHHHHhcccCCcEEEeecC
Q 007499 377 PAAAPFAKD--PGD----FMGLREGASLLEVVRKVKPHVLLGLSG 415 (601)
Q Consensus 377 ~~k~~fa~~--~~~----~~~~~~~~~L~e~V~~vkptvLIG~S~ 415 (601)
...++|.+. ... .....+...+.++++..|||+++=+.+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 333333321 000 000124567999999999999997665
No 384
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=43.68 E-value=1.3e+02 Score=30.98 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=52.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||.|+|+ |..|-.+++.+.+. .++ +-..++|++.- + .... ..+ . .....++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~~----~--~~~~-~~~-----~---i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPGS----P--LVGQ-GAL-----G---VAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCCc----c--cccc-CCC-----C---ccccCCHHH
Confidence 48999999 99998887766541 222 23556777521 1 0000 011 0 112467888
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe
Q 007499 401 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 440 (601)
Q Consensus 401 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 440 (601)
+++ ++|++|=+|. |... .++++...+ ...|+|..
T Consensus 57 ll~--~~DvVid~t~-p~~~-~~~~~~al~--~G~~vvig 90 (257)
T PRK00048 57 VLA--DADVLIDFTT-PEAT-LENLEFALE--HGKPLVIG 90 (257)
T ss_pred hcc--CCCEEEECCC-HHHH-HHHHHHHHH--cCCCEEEE
Confidence 886 5999998884 4444 666665543 56888865
No 385
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=43.62 E-value=20 Score=38.51 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 579999999999999977643 465 46777764
No 386
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=43.59 E-value=80 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=25.5
Q ss_pred CHHHHhcccCCcE-EEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 397 SLLEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 397 ~L~e~V~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
.|.+.... .|+ ++|-|-..+ |.-.++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma---~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA---FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH---hCCCEEE
Confidence 36666666 787 677664333 5556899996 5899997
No 387
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=21 Score=40.74 Aligned_cols=73 Identities=27% Similarity=0.446 Sum_probs=44.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
+-||+++|||..|+-.-+.|+ ..|+ +.|.++|.+- -+-.+|+. |--|-+++- +......-.+
T Consensus 12 ~~riLvVGaGGIGCELLKnLa-----l~gf------~~IhiIDlDT---IDlSNLNR-QFLFrkkhV---gqsKA~vA~~ 73 (603)
T KOG2013|consen 12 SGRILVVGAGGIGCELLKNLA-----LTGF------EEIHIIDLDT---IDLSNLNR-QFLFRKKHV---GQSKATVAAK 73 (603)
T ss_pred cCeEEEEecCcccHHHHHHHH-----HhcC------CeeEEEeccc---eeccchhh-hheeehhhc---CchHHHHHHH
Confidence 389999999977765444443 3566 5799999973 32234442 233444321 1112345678
Q ss_pred HhcccCCcEEE
Q 007499 401 VVRKVKPHVLL 411 (601)
Q Consensus 401 ~V~~vkptvLI 411 (601)
+|++..|.+=|
T Consensus 74 ~v~~Fnpn~~l 84 (603)
T KOG2013|consen 74 AVKQFNPNIKL 84 (603)
T ss_pred HHHHhCCCCce
Confidence 89999888755
No 388
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=43.36 E-value=20 Score=39.44 Aligned_cols=33 Identities=42% Similarity=0.745 Sum_probs=22.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
|||+|+|.||+.-|-... +.|+ ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AA-----r~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAA-----RAGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHH-----HTTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHH-----HCCC-------EEEEEECCccC
Confidence 799999999988876554 3564 79999998866
No 389
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=43.26 E-value=20 Score=38.07 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
..|+|+|||.+|+..|-.|.. .|+ ++.++|++-
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 579999999999999876643 454 578888763
No 390
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.24 E-value=22 Score=41.30 Aligned_cols=34 Identities=35% Similarity=0.655 Sum_probs=27.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
..||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 49999999999999999888753 43 477888764
No 391
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=43.22 E-value=13 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=25.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
|++.+++|+|+|..|.-=+++|+++ | .++.++...-
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 4459999999999998777777653 2 3688887763
No 392
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=43.08 E-value=62 Score=33.21 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.++.|+|+|.-|-|+|..+..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a 23 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA 23 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC
Confidence 3789999999999999999875
No 393
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=42.87 E-value=18 Score=38.38 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.0
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~ 343 (601)
.|+|+|||.||+..|-.|..+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999887653
No 394
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=42.66 E-value=26 Score=36.84 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=28.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
..+|+|+|+|-+|+.+|-.|... |. +|.++|++..-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 37899999999999998888753 42 68888876553
No 395
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=42.55 E-value=22 Score=38.41 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.8
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~ 343 (601)
||+|+|||-||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999888764
No 396
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=42.52 E-value=27 Score=37.47 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 367 (601)
-.|+|+|||.+|+.+|..|... .|. +++.++|++.+
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 5699999999999999988762 243 36999998643
No 397
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=42.45 E-value=24 Score=39.32 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 3899999999999998887754 353 47778765
No 398
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=42.17 E-value=11 Score=40.52 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=51.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
|+|+|+|..|-.+++.|.+.. .. .+|.+.|++--=-+.- ..+...+..+.+-+ ..+..+|.+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~~------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----PF------EEVTVADRNPEKAERLAEKLLGDRVEAVQVD-----VNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----CE-------EEEEEESSHHHHHHHHT--TTTTEEEEE-------TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----CC------CcEEEEECCHHHHHHHHhhccccceeEEEEe-----cCCHHHHHHHH
Confidence 789999999999998887631 11 2789898851100000 00011111111110 01234588999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 403 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 403 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
++ .|++|-+++.. +...++++-.+ ...+.|=
T Consensus 66 ~~--~dvVin~~gp~--~~~~v~~~~i~--~g~~yvD 96 (386)
T PF03435_consen 66 RG--CDVVINCAGPF--FGEPVARACIE--AGVHYVD 96 (386)
T ss_dssp TT--SSEEEE-SSGG--GHHHHHHHHHH--HT-EEEE
T ss_pred hc--CCEEEECCccc--hhHHHHHHHHH--hCCCeec
Confidence 88 59999988643 88888887644 3344444
No 399
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.11 E-value=18 Score=41.15 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=30.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE-----EEEecCccccC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF-----FLLDKDGLITK 370 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i-----~lvD~~GLi~~ 370 (601)
+||+|+|||-||++.|..|.++.. -++.=||+.++ -..|++|..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCceeeeeecCCCCeee
Confidence 589999999999999999987632 12334555432 12456665543
No 400
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=42.07 E-value=63 Score=34.25 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=73.6
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCCHHHHhcc
Q 007499 326 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 404 (601)
Q Consensus 326 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~ 404 (601)
|+|||..|..+|.+|+. .|+- ..|.|+|.+-=..++- -+|.+....+.++. .. ..+-.+.+++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~i-----~~~~~~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGIA-----DEIVLIDINKDKAEGEAMDLQHAASFLPTPK-KI-----RSGDYSDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCChhhHHHHHHHHhhcccCCCe-EE-----ecCCHHHHCC
Confidence 58999999999988764 3442 5799999842111111 23444332221211 11 1123466777
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC--cEEEEcC
Q 007499 405 VKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--NIVFASG 468 (601)
Q Consensus 405 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~G--rai~AsG 468 (601)
.|++|=+.+.+ |- .=+++++.+.+ ++..-+|+-.|||.. +...-++++++= +-+|.+|
T Consensus 65 --aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~g 138 (299)
T TIGR01771 65 --ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSG 138 (299)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEecc
Confidence 79988555543 31 11456777754 889999999999985 666777766521 2366766
Q ss_pred CCC
Q 007499 469 SPF 471 (601)
Q Consensus 469 SPf 471 (601)
.-.
T Consensus 139 t~L 141 (299)
T TIGR01771 139 TVL 141 (299)
T ss_pred chH
Confidence 443
No 401
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=42.07 E-value=1.2e+02 Score=33.54 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=27.7
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 397 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 397 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
.+.+.+.. .|+++=.| ....|.-.++++|+ +..|+|.
T Consensus 363 ~v~~~l~~--aDv~vlpS-~~Eg~p~~vlEAma---~G~PVVa 399 (475)
T cd03813 363 NVKEYLPK--LDVLVLTS-ISEGQPLVILEAMA---AGIPVVA 399 (475)
T ss_pred cHHHHHHh--CCEEEeCc-hhhcCChHHHHHHH---cCCCEEE
Confidence 46666665 78888555 45678889999996 5899987
No 402
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=42.06 E-value=51 Score=31.99 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 303 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 303 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+..+.++...+.-... ++|+|+|+|+.|..++++.. ..| .+++.++++
T Consensus 120 ~~a~~~l~~~~~~~~~---~~vli~g~~~~G~~~~~~a~-----~~g-------~~v~~~~~~ 167 (271)
T cd05188 120 ATAYHALRRAGVLKPG---DTVLVLGAGGVGLLAAQLAK-----AAG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcC-------CeEEEEcCC
Confidence 3334445555443456 89999999885555544332 234 367777664
No 403
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.00 E-value=23 Score=39.55 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
++||+|+|.|..|.++|++|...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHc
Confidence 48999999999999999998764
No 404
>PRK05868 hypothetical protein; Validated
Probab=41.99 E-value=22 Score=38.14 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+|+|+|||.+|+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999877654
No 405
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=41.97 E-value=22 Score=39.26 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|++|+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999887765 34 369999975
No 406
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=41.96 E-value=20 Score=37.66 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=30.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 370 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~ 370 (601)
|.+++|+++|.|-.|-=+++.|.. .|+ .+|.++|-+-+=.+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 445999999999888766666554 565 68999999866443
No 407
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=41.95 E-value=36 Score=41.32 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=32.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 376 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 376 (601)
.+||||+|+|.||+..|+.|..... .. .-.|.+++..--+.-+|..|+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~-~~-------~~~Itvi~~e~~~~Y~r~~L~ 50 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD-AA-------NFDITVFCEEPRIAYDRVHLS 50 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC-CC-------CCeEEEEECCCCCcccCCcch
Confidence 3799999999999999988875321 01 136999988755443443343
No 408
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=41.90 E-value=22 Score=39.10 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=25.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
++|+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~~ 33 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERGP 33 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCCc
Confidence 8999999999999887765 34 3789999753
No 409
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.90 E-value=22 Score=38.83 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999998887653 4 369999975
No 410
>PRK14852 hypothetical protein; Provisional
Probab=41.83 E-value=20 Score=44.04 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
++|+. .||+|+|+|..|.-||..|+.+ |+ ++|.++|-+=
T Consensus 328 ~kL~~---srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLR---SRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhc---CcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 45666 9999999998888888888765 44 6899999873
No 411
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=41.72 E-value=1.2e+02 Score=33.02 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhc
Q 007499 302 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 381 (601)
Q Consensus 302 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~ 381 (601)
.|+.++|=....+.. -++.|+|+|.-+ +..+.++..--++ ++|++.|++ ++.-..
T Consensus 116 AasavAa~~LA~~da-----~~laiIGaG~qA----~~ql~a~~~v~~~------~~I~i~~r~----------~~~~e~ 170 (330)
T COG2423 116 AASAVAAKYLARKDA-----STLAIIGAGAQA----RTQLEALKAVRDI------REIRVYSRD----------PEAAEA 170 (330)
T ss_pred HHHHHHHHHhccCCC-----cEEEEECCcHHH----HHHHHHHHhhCCc------cEEEEEcCC----------HHHHHH
Confidence 445666656655544 458999999765 4444554422232 578877774 112223
Q ss_pred cccccCC-C-CCcccCCCHHHHhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007499 382 FAKDPGD-F-MGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 457 (601)
Q Consensus 382 fa~~~~~-~-~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~ 457 (601)
|+..-.. . .......|++++|+. .|+++.++.. .-.|+.++|+.= -=|.-.=||+-.+.|+.++-..+
T Consensus 171 ~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~G------~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 171 FAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKPG------THINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCCC------cEEEecCCCCcccccCCHHHHHh
Confidence 3321100 0 001235789999999 8999987543 467888887731 12333345777888999987654
No 412
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.63 E-value=81 Score=34.42 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=26.0
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 7899999 999999999888763 42 48888874
No 413
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=41.57 E-value=25 Score=39.52 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
||+++|||..|+-+++.|+.+++ -.|- ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv-~~g~-----~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGV-GTGE-----SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CcCC-----CCeEEEECCC
Confidence 68999999999999999887644 1111 1589999987
No 414
>PRK09897 hypothetical protein; Provisional
Probab=41.49 E-value=27 Score=40.15 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecCC
Confidence 4799999999999999999762 1 113699999854
No 415
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=41.49 E-value=1.6e+02 Score=33.28 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=80.5
Q ss_pred CccccccccCCCChhhhhHhHHHHHHHHHHhCCCeEEeeCCCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHH
Q 007499 232 DRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRA 311 (601)
Q Consensus 232 DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~ 311 (601)
|||||=|+-++. ..--.|+++.++.-- --. .-.+++ +..||..
T Consensus 273 DP~fl~~ka~~y------g~~~rlI~tAreIN~------~mP---~~Vv~~----------------------~~~al~~ 315 (436)
T COG0677 273 DPYFLTWKAPEY------GLPARLIRTAREIND------SMP---RHVVDR----------------------VKEALNK 315 (436)
T ss_pred Cchheeeccccc------CCchHHHHHHHHHhc------cCC---HHHHHH----------------------HHHHHHH
Confidence 999999987752 123457777665431 111 112222 5566668
Q ss_pred hCCCCCCCCCceEEEeCc----------chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhc
Q 007499 312 QGLSLTDFADQKIVVVGA----------GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 381 (601)
Q Consensus 312 ~g~~l~dl~~~riv~~GA----------GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~ 381 (601)
.|++++. .||+++|- -|=.+.|.++|.+. | ..+.++|.+ .++.+..
T Consensus 316 ~~k~~~~---skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~-----g-------~~v~~~DP~---------v~~~~~~ 371 (436)
T COG0677 316 AGKPLSG---SKILVLGLAYKGDVDDLRESPALDIIELLEEW-----G-------GEVLVYDPY---------VKELPTR 371 (436)
T ss_pred cCCCCcC---ceEEEEEeeecCCCcccccCchHHHHHHHHHh-----C-------CeEEEECCC---------CCcchhh
Confidence 8999999 99999996 25567777777653 3 357777774 2222211
Q ss_pred cccccCCCCCcccCCCHHHHhcccCCcEEEeecCCCCC---CCHHHHHHhhhcCCCCCeEEecCC
Q 007499 382 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV---FNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 382 fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~---Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
+.... ....+++++++. .|++|=++. ... ++-+.+.. ..++|+=-=|
T Consensus 372 ~~~~~------~~~~~~e~al~~--~D~vVi~tD-H~~fk~id~~~i~~------~~~vivDtrn 421 (436)
T COG0677 372 EDGEG------VTLAILEEALKD--ADAVVIATD-HSEFKEIDYEAIGK------EAKVIVDTRN 421 (436)
T ss_pred hhccc------cchhhHHHHhcc--CCEEEEEec-cHHhhcCCHHHhcc------CCcEEEECcc
Confidence 11110 012569999998 688885554 344 45544443 3667774444
No 416
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=41.18 E-value=22 Score=40.09 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
..|+|+|||.+|+..|-.|..
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 579999999999999977754
No 417
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=40.93 E-value=25 Score=37.89 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 579999999999999876643 565 366677653
No 418
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=40.75 E-value=23 Score=42.08 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=58.4
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc--------cCCCHHHHhcccCCcEEEEcCCCC
Q 007499 400 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN--------AECTAADAFKHAGENIVFASGSPF 471 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~--------aE~tpeda~~wt~Grai~AsGSPf 471 (601)
++=+.++|+++|..+| ...=-.++-..+ ++-+|=|.+=.-||.+. .+-|.+++++..-. |+..-=.
T Consensus 413 ~l~~~~~~~~ilasnT-S~l~i~~ia~~~--~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~---~~~~lgk 486 (714)
T TIGR02437 413 EVEQHVREDAILASNT-STISISLLAKAL--KRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVA---YASKMGK 486 (714)
T ss_pred HHHhhCCCCcEEEECC-CCCCHHHHHhhc--CCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHH---HHHHcCC
Confidence 3334578999998776 343333444433 14455588889999752 23344454432210 1111113
Q ss_pred CceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHHH
Q 007499 472 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 517 (601)
Q Consensus 472 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA 517 (601)
.||..+ ..||-.=|-..+|-+--+..+...- +|.+-+-.|.
T Consensus 487 ~pv~v~----d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 487 TPIVVN----DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred EEEEeC----CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 344331 4577777877777766665555433 5666666553
No 419
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.57 E-value=25 Score=38.34 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
...+++|+|+|..|.++|+.|.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~ 27 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKL 27 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC
Confidence 348999999999999998888754
No 420
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=40.44 E-value=22 Score=37.76 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 579999999999999877653 454 57888875
No 421
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=40.14 E-value=25 Score=38.97 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.++|+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~-----~G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQ-----LG-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEEcc
Confidence 469999999999999887765 34 479999975
No 422
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.11 E-value=92 Score=29.81 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=17.2
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhh
Q 007499 406 KPHVLLGLSGVGGVFNEEVLKAMR 429 (601)
Q Consensus 406 kptvLIG~S~~~g~Ft~evv~~Ma 429 (601)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 369999999644 4799999883
No 423
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.73 E-value=90 Score=28.49 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=43.1
Q ss_pred CCCccccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE
Q 007499 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI 267 (601)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l 267 (601)
.|.+|-...--+..+-......+|+. |+|-+||| |.++ +.+-++|.+-+++|++.++..+|++.
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~ 81 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVK 81 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 34445555554544444455566644 46788997 4433 25678999999999999999999874
No 424
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=39.63 E-value=67 Score=34.15 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=54.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.++.|+|+|.-|..-++.+... .++ ++|+++|++- . ........+.+ . .+. .....+++++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~~----~--~~~~~~~~~~~-~-~~~-v~~~~~~~~a 189 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRSP----E--RAEAFAARLRD-L-GVP-VVAVDSAEEA 189 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SSH----H--HHHHHHHHHHC-C-CTC-EEEESSHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccCh----h--HHHHHHHhhcc-c-ccc-ceeccchhhh
Confidence 6899999999887777766654 223 6899988741 1 11222222222 0 110 1235789999
Q ss_pred hcccCCcEEEeecCCCC---CCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCHHHH
Q 007499 402 VRKVKPHVLLGLSGVGG---VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADA 455 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g---~Ft~evv~~Ma~~~~erPIIFaLSNPt-~~aE~tpeda 455 (601)
++. .|+++.+++... .|+.++++. .-.|-++.--+ .+.|+.++-.
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~~-------g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLKP-------GTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS-T-------T-EEEE-S-SSTTBESB-HHHH
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcCC-------CcEEEEecCCCCchhhcCHHHh
Confidence 999 899998765433 688887763 44677776432 2358877543
No 425
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.61 E-value=31 Score=38.28 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=55.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCC-CCCChh---hhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA---AAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~---k~~fa~~~~~~~~~~~~~~ 397 (601)
.+||++|||-.|-.+|..|.+- |- .+|++.|+. .+. ..+... +...+.-+ ..+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD-----~~d~~a 61 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVD-----AADVDA 61 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEec-----ccChHH
Confidence 4799999999999999998763 22 489999884 110 011111 12222211 123457
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007499 398 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 430 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 430 (601)
|.++|++ .++.|.+- |+-++..++++-.+
T Consensus 62 l~~li~~--~d~VIn~~--p~~~~~~i~ka~i~ 90 (389)
T COG1748 62 LVALIKD--FDLVINAA--PPFVDLTILKACIK 90 (389)
T ss_pred HHHHHhc--CCEEEEeC--CchhhHHHHHHHHH
Confidence 9999999 59988765 77888888877654
No 426
>PRK07589 ornithine cyclodeaminase; Validated
Probab=39.52 E-value=1.6e+02 Score=32.10 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=63.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.++.|+|+|.-+..-++.++... .+ ++|+++|+. .. ....+...+.+..-+. ....+++|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~--~a~~~~~~~~~~~~~v---~~~~~~~~a 190 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PA--ATAKLARNLAGPGLRI---VACRSVAEA 190 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HH--HHHHHHHHHHhcCCcE---EEeCCHHHH
Confidence 78999999988776666665531 22 678888773 11 1111111221111011 124689999
Q ss_pred hcccCCcEEEeecCCC---CCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHHH
Q 007499 402 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAADA 455 (601)
Q Consensus 402 V~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~~aE~tpeda 455 (601)
+++ .||++.+++.. -+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp-------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP-------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC-------CcEEEecCCCCCCcccCCHHHH
Confidence 988 89999876532 4588888864 1135555 34334569998753
No 427
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=39.48 E-value=89 Score=35.39 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=77.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHH--hcCCChhhhcCeEEEEecCccccCCC-CCCChhhhccccccCCCCCcccCCC
Q 007499 322 QKIVVVGA-GSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 322 ~riv~~GA-GsAg~GiA~ll~~~~~~--~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~ 397 (601)
.||.|+|| |..|..+|-.|+..-+- .+|+. ..++++|.+-=...+- -+|.+..-++.+.. .-..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~-----~eLvliD~~~~~a~G~amDL~daa~~~~~~v------~i~~~ 169 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIA-----LKLLGSERSKQALEGVAMELEDSLYPLLREV------SIGID 169 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcc-----cEEEEEcCCcchhHHHHHHHHHhhhhhcCce------EEecC
Confidence 79999999 99999999988764110 11332 3788998742222111 14444433332210 00123
Q ss_pred HHHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--C
Q 007499 398 LLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 461 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt~--G 461 (601)
-.+..++ .|++|=+.+.| |- .=+++.+.+.+.++..-||+-.|||.. ....-+++++. -
T Consensus 170 ~ye~~kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD---v~t~v~~k~sg~~~ 244 (444)
T PLN00112 170 PYEVFQD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN---TNALICLKNAPNIP 244 (444)
T ss_pred CHHHhCc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH---HHHHHHHHHcCCCC
Confidence 4566777 78887555543 31 113556666321478999999999984 66666666652 1
Q ss_pred cEEEEcCCCCCc
Q 007499 462 NIVFASGSPFEN 473 (601)
Q Consensus 462 rai~AsGSPf~p 473 (601)
+-+|.||.=.+.
T Consensus 245 ~rViGtgT~LDs 256 (444)
T PLN00112 245 AKNFHALTRLDE 256 (444)
T ss_pred cceEEeeccHHH
Confidence 235566644443
No 428
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=39.42 E-value=29 Score=37.36 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
.|+|+|||-||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 589999999999999888764 53 477888653
No 429
>PRK10015 oxidoreductase; Provisional
Probab=39.41 E-value=24 Score=38.85 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
-.|+|+|||.||+..|..+.. .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 469999999999999887754 464 477777653
No 430
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.37 E-value=78 Score=32.28 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=53.7
Q ss_pred CeEEEEecCccccCCCCCCChhhhcccccc-CC-CCCcccCCCHHHHhcc--cCCc-EEEeecCCCCCCCHHHHHHhhhc
Q 007499 357 NKFFLLDKDGLITKERKNLDPAAAPFAKDP-GD-FMGLREGASLLEVVRK--VKPH-VLLGLSGVGGVFNEEVLKAMRES 431 (601)
Q Consensus 357 ~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~-~~-~~~~~~~~~L~e~V~~--vkpt-vLIG~S~~~g~Ft~evv~~Ma~~ 431 (601)
+.|+++|.+|.+.....++.-.+ ..++.. -+ +. ..+..|++|+-+- ...+ ++||..+ ++++.++.++++
T Consensus 44 ~~l~ivDldga~~g~~~n~~~i~-~i~~~~~~pv~~-gGGIrs~edv~~l~~~G~~~vivGtaa----~~~~~l~~~~~~ 117 (228)
T PRK04128 44 DKIHVVDLDGAFEGKPKNLDVVK-NIIRETGLKVQV-GGGLRTYESIKDAYEIGVENVIIGTKA----FDLEFLEKVTSE 117 (228)
T ss_pred CEEEEEECcchhcCCcchHHHHH-HHHhhCCCCEEE-cCCCCCHHHHHHHHHCCCCEEEECchh----cCHHHHHHHHHH
Confidence 68999999999865433433222 223221 11 11 1234677776542 2343 6888554 379999999875
Q ss_pred CCCCCeEEecC---------CCCCccCCCHHHHhcc
Q 007499 432 DSVKPAIFAMS---------NPTMNAECTAADAFKH 458 (601)
Q Consensus 432 ~~erPIIFaLS---------NPt~~aE~tpeda~~w 458 (601)
+ .+ ||++|= +-...++.+++|+.+|
T Consensus 118 ~-g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~ 151 (228)
T PRK04128 118 F-EG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEM 151 (228)
T ss_pred c-CC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHH
Confidence 6 44 888663 2223345666665554
No 431
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=39.21 E-value=49 Score=33.27 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=40.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
||+|.|| |-.|-.+++.|.+ .| .+++.+++. ..++. +..++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d~~-----------------~~~~~~~~ 45 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLDLT-----------------DPEALERL 45 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccCCC-----------------CHHHHHHH
Confidence 6899997 8888777777664 34 357777763 11111 12458888
Q ss_pred hcccCCcEEEeecCC
Q 007499 402 VRKVKPHVLLGLSGV 416 (601)
Q Consensus 402 V~~vkptvLIG~S~~ 416 (601)
++.++||++|=+.+.
T Consensus 46 ~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 46 LRAIRPDAVVNTAAY 60 (287)
T ss_pred HHhCCCCEEEECCcc
Confidence 888899999987764
No 432
>PRK08655 prephenate dehydrogenase; Provisional
Probab=39.13 E-value=89 Score=34.90 Aligned_cols=91 Identities=16% Similarity=0.287 Sum_probs=52.5
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 323 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 323 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
||.|+| .|..|..+|..+.. .|. +++++|++. +... ..+.... .....++.++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~-----~G~-------~V~v~~r~~------~~~~----~~a~~~g----v~~~~~~~e~ 55 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE-----KGF-------EVIVTGRDP------KKGK----EVAKELG----VEYANDNIDA 55 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH-----CCC-------EEEEEECCh------HHHH----HHHHHcC----CeeccCHHHH
Confidence 789998 69999888888765 342 688888641 0111 1111100 0012356777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 443 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 443 (601)
++. +|++| ++. |-..++++++.++....+.-+|+-+|+
T Consensus 56 ~~~--aDvVI-lav-p~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 56 AKD--ADIVI-ISV-PINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred hcc--CCEEE-Eec-CHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 766 67765 343 333457777777543345668887775
No 433
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.09 E-value=30 Score=37.98 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.3
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~ 342 (601)
..+|+|+|+|.+|+++|+.|.+
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~ 26 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRK 26 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 4899999999999999888765
No 434
>PTZ00188 adrenodoxin reductase; Provisional
Probab=39.01 E-value=36 Score=39.05 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||+|+|||.||+-.|..++.. .|. ++.++|+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 7999999999999999977642 242 57788875
No 435
>PRK06392 homoserine dehydrogenase; Provisional
Probab=38.94 E-value=1.4e+02 Score=32.33 Aligned_cols=86 Identities=22% Similarity=0.364 Sum_probs=49.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEecCccccCCCCCCChhh-hccccccCCCCCcc-cCCCHH
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAA-RMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGDFMGLR-EGASLL 399 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~-~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k-~~fa~~~~~~~~~~-~~~~L~ 399 (601)
||.++|.|..|-+++++|.+.-. ++.|+.. +=+-+.|++|.+.+.. .++..+ ..+.+.. .+.... ...++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l----~VVaVsds~g~l~~~~-Gldl~~l~~~~~~g-~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGI----SVVSVSDSKLSYYNER-GLDIGKIISYKEKG-RLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCe----EEEEEEECCCcccCCc-CCChHHHHHHHhcC-ccccCCCCcCCHH
Confidence 79999999999999999876311 1223321 2255679999888755 233211 1111110 000000 112577
Q ss_pred HHhcccCCcEEEeecC
Q 007499 400 EVVRKVKPHVLLGLSG 415 (601)
Q Consensus 400 e~V~~vkptvLIG~S~ 415 (601)
+.+. .+|||+|=+++
T Consensus 76 ~ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 76 EIFE-IKPDVIVDVTP 90 (326)
T ss_pred HHhc-CCCCEEEECCC
Confidence 7765 58999998874
No 436
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=38.87 E-value=96 Score=35.61 Aligned_cols=22 Identities=9% Similarity=0.424 Sum_probs=19.6
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~ 342 (601)
..|+.|+|-..-.+|+++.|.+
T Consensus 363 GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 363 GKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred CceEEEECCHHHHHHHHHHHHH
Confidence 3999999999999999998875
No 437
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=38.77 E-value=27 Score=38.78 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=20.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|+|+|||+||+-.|-.+.+ .| .++.++++.
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999888777743 34 368888876
No 438
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.72 E-value=2e+02 Score=31.29 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=28.5
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEE-EecCccccccCCCCCccccccc
Q 007499 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIV-LTDGSRILGLGDLGVQGIGIPI 198 (601)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~viV-VTDG~rILGLGDlG~~Gm~I~i 198 (601)
|.|-...|-..+.++|+.. .+++.. .+.|+.+=-+-..+....-|.+
T Consensus 167 g~~~~~~d~~el~~lL~~~---Gi~~~~~~~~~~~~~~i~~~~~A~~niv~ 214 (406)
T cd01967 167 GEYNIGGDAWVIKPLLEEL---GIRVNATFTGDGTVDELRRAHRAKLNLVH 214 (406)
T ss_pred eccccchhHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhhCccCCEEEEE
Confidence 4443445777888888864 456655 4556776666666655544443
No 439
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=38.66 E-value=2.4e+02 Score=30.76 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=83.2
Q ss_pred HHhCCCeE-EeeCCCChHHHHHHHHhccCCccc-cCcchhHHHHHHHHHHHHHHhC-CCCCCCCCceEEEeCcchHHHHH
Q 007499 260 HARWPKAI-FEDFQMKWAFETLERYRKRFCMFN-DDIQGTAGVALAGLLGTVRAQG-LSLTDFADQKIVVVGAGSAGLGV 336 (601)
Q Consensus 260 ~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~Fn-DDiQGTaav~LAgll~Alr~~g-~~l~dl~~~riv~~GAGsAg~Gi 336 (601)
..+|.+++ +..+...-.. .+.+| ..+|++| .|-..--+=+||=++.-.+..| ++++. .+|.++|-+.- ++
T Consensus 97 ls~y~D~Iv~R~~~~~~~~-~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g---~~ia~vGD~~~--~v 169 (336)
T PRK03515 97 LGRMYDGIQYRGYGQEIVE-TLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNE---MTLAYAGDARN--NM 169 (336)
T ss_pred HHHhCcEEEEEeCChHHHH-HHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCC---CEEEEeCCCcC--cH
Confidence 45668888 8876554333 33444 4689999 3334445667788777766665 46777 99999998633 47
Q ss_pred HHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc-cCCCCCcccCCCHHHHhcccCCcEEEeec
Q 007499 337 LKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLEVVRKVKPHVLLGLS 414 (601)
Q Consensus 337 A~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~-~~~~~~~~~~~~L~e~V~~vkptvLIG~S 414 (601)
++-++.++. .-|+ ++.++-.+|+.-.. ++-+.-+.+++. ...+ ....++.|++++ .||+.-.+
T Consensus 170 ~~Sl~~~~~-~~g~-------~v~~~~P~~~~~~~--~~~~~~~~~~~~~g~~i---~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 170 GNSLLEAAA-LTGL-------DLRLVAPKACWPEA--ALVTECRALAQKNGGNI---TLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred HHHHHHHHH-HcCC-------EEEEECCchhcCcH--HHHHHHHHHHHHcCCeE---EEEcCHHHHhCC--CCEEEecC
Confidence 787777766 5675 68888887773221 111111223322 1111 123679999998 89999764
No 440
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=38.62 E-value=29 Score=38.02 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.+||+|||.||+..|..+.+ .| +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAK-----LG-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 469999999999999887765 34 478899983
No 441
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=38.59 E-value=40 Score=37.02 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
.++|+|||-+|.=||+.+. +.| +++.+||++-=|
T Consensus 3 d~lIVGaGlsG~V~A~~a~-----~~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAA-----QLG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHH-----HcC-------CEEEEEeccccC
Confidence 5899999999999999333 234 688888886433
No 442
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.57 E-value=40 Score=29.48 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=46.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHHh
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 402 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 402 (601)
||.|+|+|..|......+... ..+. +-..++|++. +.-+.+++... .+...|+.|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~----------~~~~~~~~~~~----~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP----------ERAEAFAEKYG----IPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH----------HHHHHHHHHTT----SEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH----------HHHHHHHHHhc----ccchhHHHHHH
Confidence 899999999976664444332 0121 2244666631 11112222111 12357899999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007499 403 RKVKPHVLLGLSGVGGVFNEEVLKAMRE 430 (601)
Q Consensus 403 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 430 (601)
+.-++|+++ +++ |.....++++...+
T Consensus 59 ~~~~~D~V~-I~t-p~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVI-IAT-PPSSHAEIAKKALE 84 (120)
T ss_dssp HHTTESEEE-EES-SGGGHHHHHHHHHH
T ss_pred HhhcCCEEE-Eec-CCcchHHHHHHHHH
Confidence 987899887 444 44556666665543
No 443
>PRK06126 hypothetical protein; Provisional
Probab=38.49 E-value=29 Score=39.03 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 789999999999999877754 454 35666654
No 444
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=38.44 E-value=65 Score=34.00 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=31.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
++|+|+|+|.+|+-+|..|..... +.|. +.+|.+++...++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~-~~g~-----~~~V~li~~~~~l 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLP-KRGL-----RGQVTLIAGASLL 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHH-hcCC-----CceEEEEeCCccc
Confidence 799999999999999999987665 4453 2478888544343
No 445
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=45 Score=37.81 Aligned_cols=152 Identities=24% Similarity=0.301 Sum_probs=83.6
Q ss_pred eeeccCcccccceeeccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCccccccCCCCCccc
Q 007499 115 RVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGI 194 (601)
Q Consensus 115 ~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm 194 (601)
.+..+|...+=.++..|..-+-..+==..|.+....| ++.| .-|.. +-|= .|+-|-
T Consensus 191 ~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvG------kawKR------------GYLL---YGPPGT 246 (457)
T KOG0743|consen 191 SVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVG------KAWKR------------GYLL---YGPPGT 246 (457)
T ss_pred ecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcC------cchhc------------ccee---eCCCCC
Confidence 3566777766667777776655444333344444433 2222 23421 1122 344443
Q ss_pred cccchhhhHHHhhcCCCCCceecEEe-eccCCchhcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE--EeeC
Q 007499 195 GIPIGKLDVYVAAAGINPQRILPVML-DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI--FEDF 271 (601)
Q Consensus 195 ~I~iGKl~LY~a~gGI~P~~~lPV~L-DvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l--~EDf 271 (601)
||+++-.|.|+-==-...=+.| .|+.| +|.=.-....-++.+ .|||
T Consensus 247 ----GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 247 ----GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATPNKSILLIEDI 295 (457)
T ss_pred ----CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCCCCcEEEEeec
Confidence 7999999999864222444444 45432 343333333335554 9999
Q ss_pred CCChHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 007499 272 QMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA 329 (601)
Q Consensus 272 ~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAgll~Alr~~g~~l~dl~~~riv~~GA 329 (601)
..+|.+=++-.++-.-|++ .-+-|||.||||++--.-..=.+ .||+||=.
T Consensus 296 --Dcs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~---ERIivFTT 345 (457)
T KOG0743|consen 296 --DCSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGD---ERIIVFTT 345 (457)
T ss_pred --ccccccccccccccccccC---CcceeehHHhhhhhccccccCCC---ceEEEEec
Confidence 4556654444444334433 46779999999987543333334 67777644
No 446
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=38.36 E-value=2.2e+02 Score=28.90 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=29.3
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 397 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 397 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
.+.+.+.. .|++|-.|.....|.--++++|+ +..|+|.
T Consensus 256 ~~~~~l~~--ad~~i~ps~~~e~~~~~l~EA~a---~G~PvI~ 293 (355)
T cd03819 256 DMPAAYAL--ADIVVSASTEPEAFGRTAVEAQA---MGRPVIA 293 (355)
T ss_pred cHHHHHHh--CCEEEecCCCCCCCchHHHHHHh---cCCCEEE
Confidence 46677766 78999777456678889999996 5889985
No 447
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=38.36 E-value=27 Score=37.62 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.+|+..|-.|.. .|+ ++.++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 579999999999988877765 454 46777775
No 448
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=38.14 E-value=28 Score=38.21 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
-.|+|+|||.||+..|..+.+. | .++.++|++.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 5699999999999998887653 4 4799999863
No 449
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=38.07 E-value=1.2e+02 Score=30.72 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=18.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAG 349 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~G 349 (601)
||.|+|.|+.+ -+|+-+...|. +.|
T Consensus 2 rI~i~G~G~S~-~~a~~~~~~l~-~~g 26 (268)
T TIGR00393 2 KLVIVGIGKSG-LIGKKIVATFA-STG 26 (268)
T ss_pred cEEEEecChHH-HHHHHHHHHHH-hcC
Confidence 78999999875 47777777666 345
No 450
>PRK13984 putative oxidoreductase; Provisional
Probab=37.92 E-value=31 Score=39.64 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.+++|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~-----~G~-------~v~vie~~ 315 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLAT-----MGY-------EVTVYESL 315 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 789999999999999998865 343 57788765
No 451
>PRK07190 hypothetical protein; Provisional
Probab=37.90 E-value=28 Score=39.13 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=24.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
..|+|+|||.+|+-.|-.|. +.|+ ++.++|+.-
T Consensus 6 ~dVlIVGAGPaGL~lA~~La-----r~Gi-------~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQ-----LCGL-------NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHH-----HcCC-------CEEEEeCCC
Confidence 57999999999998876554 3464 467777653
No 452
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.85 E-value=29 Score=38.49 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
..||+|+|.|-.|+++|++|...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC
Confidence 38999999999999999988753
No 453
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=37.80 E-value=46 Score=36.65 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=61.0
Q ss_pred hhhhhHhHHHHHH--HHHHhCCCeE-EeeCCCChHHHHHHHHhccCCccccCcchhHH-HHHHHHHHHHHHhCCCCCCCC
Q 007499 245 GEEYLSIVDEFME--AVHARWPKAI-FEDFQMKWAFETLERYRKRFCMFNDDIQGTAG-VALAGLLGTVRAQGLSLTDFA 320 (601)
Q Consensus 245 g~~Y~~~vdefv~--av~~~~P~~l-~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaa-v~LAgll~Alr~~g~~l~dl~ 320 (601)
|.-..++++++++ ..++..|+.. =|||+..-..++|++|. .=.+|++-|-. .|...+..+++....+ -
T Consensus 216 G~v~~~lL~~ll~~pff~~~pPKStgrE~F~~~~~~~~l~~~~----~s~~D~~aTlt~~TA~sI~~~~~~~~~~--~-- 287 (365)
T PRK09585 216 GKVDEALLARLLAHPYFALPPPKSTGRELFNLAWLERQLAGFG----LSPEDVQATLTELTAASIARAVRRLPPG--P-- 287 (365)
T ss_pred CCCCHHHHHHHhcCccccCCCCCccChhhcCHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccCC--C--
Confidence 4444456777765 2445558888 99998888877887762 34578888854 4555566666543321 2
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|++.|.|+-+.-+-++|.+.
T Consensus 288 -~~vlv~GGGa~N~~Lm~~L~~~ 309 (365)
T PRK09585 288 -DELLVCGGGARNPTLMERLAAL 309 (365)
T ss_pred -CEEEEECCCcchHHHHHHHHHh
Confidence 4799999999998877777554
No 454
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=37.78 E-value=39 Score=35.89 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=56.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC-CCCCCChhh-hccccccCCCCCcccCCCHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAA-APFAKDPGDFMGLREGASLL 399 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~-~r~~l~~~k-~~fa~~~~~~~~~~~~~~L~ 399 (601)
.||+|+|.|.. |.++-++... . .+++++||-++-|.. .|+.++..- ..+ .+.-+. ...+=.
T Consensus 78 k~VLiiGgGdG--~tlRevlkh~----~------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i----~i~Dg~ 140 (282)
T COG0421 78 KRVLIIGGGDG--GTLREVLKHL----P------VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEI----IIDDGV 140 (282)
T ss_pred CeEEEECCCcc--HHHHHHHhcC----C------cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEE----EeccHH
Confidence 38999999887 5566665542 1 268999999887765 333333211 111 111110 112223
Q ss_pred HHhccc--CCcEEEeecCCC-----CCCCHHHHHHhhhcCCCCCeE
Q 007499 400 EVVRKV--KPHVLLGLSGVG-----GVFNEEVLKAMRESDSVKPAI 438 (601)
Q Consensus 400 e~V~~v--kptvLIG~S~~~-----g~Ft~evv~~Ma~~~~erPII 438 (601)
+.|+.. |-|++|==|+-| ++||++..+.-.+.+++.=|+
T Consensus 141 ~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~ 186 (282)
T COG0421 141 EFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIF 186 (282)
T ss_pred HHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEE
Confidence 333322 478888555443 679999999876544444333
No 455
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=37.59 E-value=23 Score=41.83 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|+|+|||.||+..|-.|...
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhc
Confidence 8899999999999998877653
No 456
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=37.55 E-value=32 Score=38.13 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccc
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 368 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 368 (601)
+++|+|+|||-+|+..|-.|.. .|. ++.+++++..+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~-----~G~-------~v~vlE~~~~~ 36 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAK-----RGY-------RVTLLEQHAQP 36 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCCC
Confidence 3789999999999998888865 353 57777776443
No 457
>PRK07208 hypothetical protein; Provisional
Probab=37.42 E-value=30 Score=37.99 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|+|+|||-+|+..|..|..+
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~ 26 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKR 26 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHC
Confidence 6899999999999999888763
No 458
>PRK14694 putative mercuric reductase; Provisional
Probab=37.33 E-value=32 Score=38.09 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 5699999999999998887763 4 368899975
No 459
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=37.23 E-value=73 Score=39.09 Aligned_cols=189 Identities=12% Similarity=0.179 Sum_probs=95.7
Q ss_pred CChhhHHHHHhcCCCCCeeEE-EEecCccccccCCCCCccccccchhhh-HHHh-----hcCCCCCceecEEeeccCCch
Q 007499 155 KDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLD-VYVA-----AAGINPQRILPVMLDVGTNNQ 227 (601)
Q Consensus 155 ~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~-LY~a-----~gGI~P~~~lPV~LDvGTnN~ 227 (601)
.|-..+.++|... .++++ ++|.++.+=-|-..+....-|.++.-. .+.+ -=||. .+-
T Consensus 197 gd~~elk~lL~~~---Gi~v~~~~~g~~t~eei~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP---~~~---------- 260 (917)
T PRK14477 197 GDLWGMLPLFDRL---GIRVLSCISGDAKFEELRYAHRAKLNVIICSKSLTNLARKMEKRYGIP---YLE---------- 260 (917)
T ss_pred chHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCCEEEEEcHHHHHHHHHHHHHHhCCC---EEe----------
Confidence 3444566677654 45554 556676666666666666666553322 2221 11444 110
Q ss_pred hcccCccccccccCCCChhhhhHhHHHHHHHHHHhCCCeE--Ee-eCCCChHHHHHHHHhccCCccccCcchhHHHHHHH
Q 007499 228 KLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI--FE-DFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAG 304 (601)
Q Consensus 228 ~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~l--~E-Df~~~~Af~iL~ryr~~~~~FnDDiQGTaav~LAg 304 (601)
. .++|+ +-.|+|+..+.+.+-... .+ +.-...+-+.+++.|.+
T Consensus 261 ----~-~p~Gi-----------~~T~~~L~~ia~~~g~~~~~~~~~~~~~~~e~~i~~e~~~------------------ 306 (917)
T PRK14477 261 ----E-SFYGM-----------TDTAKALRDIARELDDAGGGLEKRVLQDRVEKLIAEEEAK------------------ 306 (917)
T ss_pred ----c-CccCH-----------HHHHHHHHHHHHHhCCcccCCchhhhHHHHHHHHHHHHHH------------------
Confidence 0 11332 336788888877763211 10 00123355566665555
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhh--cc
Q 007499 305 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PF 382 (601)
Q Consensus 305 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~--~f 382 (601)
+.-++......|+. .|++|+|.+.-..++++.|.+ .|+. +..+-.+ ..+..+..+ .+
T Consensus 307 ~~~~l~~~~~~L~G---Krv~i~~g~~~~~~la~~l~e-----lGme-------vv~~g~~------~~~~~d~~~~~~~ 365 (917)
T PRK14477 307 CRAALAPYRARLEG---KRVVLFTGGVKTWSMVNALRE-----LGVE-------VLAAGTQ------NSTLEDFARMKAL 365 (917)
T ss_pred HHHHHHHHHHHccC---CEEEEECCCchHHHHHHHHHH-----CCCE-------EEEEcCC------CCCHHHHHHHHHh
Confidence 33344444455666 999999988888888887754 4653 2221111 011111111 11
Q ss_pred ccccCCCCCcccCCCHHHHhcccCCcEEEeec
Q 007499 383 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 414 (601)
Q Consensus 383 a~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 414 (601)
..+...+-...+...|++.++..|||.+||-|
T Consensus 366 ~~~~~~vi~~~d~~el~~~i~~~~pDLlig~~ 397 (917)
T PRK14477 366 MHKDAHIIEDTSTAGLLRVMREKMPDLIVAGG 397 (917)
T ss_pred cCCCCEEEECCCHHHHHHHHHhcCCCEEEecC
Confidence 11111110001234588899999999999965
No 460
>PRK13748 putative mercuric reductase; Provisional
Probab=37.20 E-value=27 Score=39.35 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-.++|+|||+||+..|..+.++ | .++.++|+.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 5699999999999998877753 4 479999975
No 461
>PRK10262 thioredoxin reductase; Provisional
Probab=37.08 E-value=30 Score=35.97 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+|+|+|+|.||+..|..+..
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 789999999999999887765
No 462
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=37.06 E-value=27 Score=43.26 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=32.6
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCc
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 366 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 366 (601)
++|.. .+|+|+|+|.-|.-||..|+.+++ ++|.++|.+-
T Consensus 20 ~kL~~---s~VLIiG~gGLG~EiaKnL~laGV-----------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAK---SNVLISGMGGLGLEIAKNLVLAGV-----------KSVTLHDTEK 58 (1008)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCe
Confidence 34556 999999999999999999987655 6899999873
No 463
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.04 E-value=34 Score=37.80 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=20.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
|...||.|+|.|-.|+.+|++|...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 4448999999999999998887653
No 464
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=36.95 E-value=40 Score=35.07 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH--hcCCChhhhcCeEEEEecCcc
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGL 367 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~--~~Gls~eeA~~~i~lvD~~GL 367 (601)
.||+++|+|.-|.-+++.|+...+. .-|..- . -+|.++|.+-+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~--g-~~i~lvD~D~V 56 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPG--G-LAVTVYDDDTV 56 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCC--C-CEEEEECCCEE
Confidence 8999999999999999999875320 112110 0 17999998743
No 465
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=36.87 E-value=30 Score=42.84 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=27.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 320 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 320 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+..||+|+|+|.||+..|..|.. .|- ++.++|..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~-----~Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR-----SGH-------NVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEccc
Confidence 34999999999999999998875 343 68888874
No 466
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=36.84 E-value=45 Score=35.87 Aligned_cols=132 Identities=20% Similarity=0.347 Sum_probs=73.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcc-ccCCCCCCChhhhccccccCCCCCcccCCCHH
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL-ITKERKNLDPAAAPFAKDPGDFMGLREGASLL 399 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL-i~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~ 399 (601)
..||.++|+|..|+++|-.|+. .|++ +++.++|-.== +--.+-||++. .+|-+...-.. .++..
T Consensus 20 ~~KItVVG~G~VGmAca~siL~-----k~La-----del~lvDv~~dklkGE~MDLqH~-s~f~~~~~V~~----~~Dy~ 84 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILL-----KGLA-----DELVLVDVNEDKLKGEMMDLQHG-SAFLSTPNVVA----SKDYS 84 (332)
T ss_pred CceEEEEccchHHHHHHHHHHH-----hhhh-----hceEEEecCcchhhhhhhhhccc-cccccCCceEe----cCccc
Confidence 4999999999999999998875 3554 57889996421 11122345433 34444321100 11111
Q ss_pred HHhcccCCcEEEeecCCC---C------------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc---CC
Q 007499 400 EVVRKVKPHVLLGLSGVG---G------------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA---GE 461 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~---g------------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~tpeda~~wt---~G 461 (601)
. - ...++.|=+.+.. | .| +.+|..+. ++.+.-|++-.|||. ++.-.-+++.| .-
T Consensus 85 ~-s--a~S~lvIiTAGarq~~gesRL~lvQrNV~if-K~iip~lv-~ySpd~~llvvSNPV---DilTYv~wKLSgfP~n 156 (332)
T KOG1495|consen 85 V-S--ANSKLVIITAGARQSEGESRLDLVQRNVDIF-KAIIPALV-KYSPDCILLVVSNPV---DILTYVTWKLSGFPKN 156 (332)
T ss_pred c-c--CCCcEEEEecCCCCCCCcHHHHHHHHHHHHH-HHHHHHHh-hcCCCeEEEEecCch---HHHHHHHHHHcCCccc
Confidence 1 1 1123333222211 1 12 45666664 388999999999998 35555555433 23
Q ss_pred cEEEEcCCCCCceec
Q 007499 462 NIVFASGSPFENVDL 476 (601)
Q Consensus 462 rai~AsGSPf~pv~~ 476 (601)
| +|.||.=.+...+
T Consensus 157 R-ViGsGcnLDsaRF 170 (332)
T KOG1495|consen 157 R-VIGSGCNLDSARF 170 (332)
T ss_pred c-eeccCcCccHHHH
Confidence 3 4477766666544
No 467
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=36.63 E-value=88 Score=36.84 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
.||.|+|+|..|..+|..+... |.. .+|+.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~~-----~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GLA-----REVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----CEEEEEECC
Confidence 6899999999999998888653 431 358888874
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=36.58 E-value=28 Score=41.56 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---cc-----CCCHHHHhcccCCcEEEEcCCCC
Q 007499 400 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NA-----ECTAADAFKHAGENIVFASGSPF 471 (601)
Q Consensus 400 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~---~a-----E~tpeda~~wt~Grai~AsGSPf 471 (601)
++=+.++|+++|..+| .. +.-.-+..-. .+-+|=|.+=.-||.. +. +-|.+++++..- . |+..-=.
T Consensus 435 ~l~~~~~~~~ilasNT-Ss-l~i~~la~~~-~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~--~-~~~~lgk 508 (737)
T TIGR02441 435 EVEAVVPPHCIIASNT-SA-LPIKDIAAVS-SRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAV--A-VGLKQGK 508 (737)
T ss_pred HHHhhCCCCcEEEEcC-CC-CCHHHHHhhc-CCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHH--H-HHHHCCC
Confidence 3335578999998776 33 3333333321 2456668888889974 22 345555554321 1 1111112
Q ss_pred CceecCCCeeeecccccccccchhhHHHHHHcCCcccCHHHHHHH
Q 007499 472 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQA 516 (601)
Q Consensus 472 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aA 516 (601)
.||..+ ..||-.=|-..+|-+.-+..+..-- ++.+-+-.|
T Consensus 509 ~pv~v~----d~pGFi~NRi~~~~~~ea~~lv~eG-v~~~~ID~a 548 (737)
T TIGR02441 509 VVIVVK----DGPGFYTTRCLGPMLAEVIRLLQEG-VDPKKLDKL 548 (737)
T ss_pred eEEEEC----CcCCchHHHHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 233331 4577777777777766665555433 466656655
No 469
>PRK06849 hypothetical protein; Provisional
Probab=36.57 E-value=22 Score=38.28 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=45.8
Q ss_pred CceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChh-hhccccccCCCCCcccCCCH
Q 007499 321 DQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-AAPFAKDPGDFMGLREGASL 398 (601)
Q Consensus 321 ~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~-k~~fa~~~~~~~~~~~~~~L 398 (601)
.++|+|.|++. .|+++|+.+..+ |. +++++|++..-.. + .+.+ ...|.-+.+......-...|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~-----G~-------~Vi~~d~~~~~~~-~--~s~~~d~~~~~p~p~~d~~~~~~~L 68 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA-----GH-------TVILADSLKYPLS-R--FSRAVDGFYTIPSPRWDPDAYIQAL 68 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-----CC-------EEEEEeCCchHHH-H--HHHhhhheEEeCCCCCCHHHHHHHH
Confidence 38999999987 588888877653 53 7999999732100 0 0000 11111111110000012458
Q ss_pred HHHhcccCCcEEEeecC
Q 007499 399 LEVVRKVKPHVLLGLSG 415 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~ 415 (601)
.++++.-++|++|=++.
T Consensus 69 ~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 69 LSIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHHcCCCEEEECCh
Confidence 88899999999997764
No 470
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=36.53 E-value=23 Score=36.14 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=24.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 369 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 369 (601)
++|+|+|+||.-+|..|.+. | ..+|.++.+-+...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 79999999999888887642 2 24788887765443
No 471
>PLN02568 polyamine oxidase
Probab=36.42 E-value=38 Score=38.86 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|+|+|||.||+..|..|...
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhc
Confidence 7899999999999999999875
No 472
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=36.38 E-value=28 Score=30.27 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=28.9
Q ss_pred ccccHHHHHHHHHHHHhccccccCCCCCCCCchh----HHHHHHHhhcccc
Q 007499 64 RVISFEQQYARFMESFRSLEKNTEGQPNKVVSLA----KWRILNRLHDRNE 110 (601)
Q Consensus 64 ~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~----k~~~L~~L~~~Ne 110 (601)
.|.++|++++||...+++++ -.+. |-+||+.|-.+-.
T Consensus 27 svgd~e~eLerCK~sirrLe----------qevnkERFrmiYLQTlLAkEr 67 (79)
T PF09036_consen 27 SVGDIEQELERCKASIRRLE----------QEVNKERFRMIYLQTLLAKER 67 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHT-
T ss_pred HhccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999987 3444 5689998877643
No 473
>PLN02985 squalene monooxygenase
Probab=36.26 E-value=34 Score=38.91 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
-+|+|+|||.||+..|-.|.. .|. ++.++|++
T Consensus 44 ~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 689999999999999877754 453 57777764
No 474
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=36.24 E-value=30 Score=39.01 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~ 342 (601)
.+|+|+|||.+|+..|..|..
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 689999999999999987764
No 475
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=36.21 E-value=34 Score=38.26 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=23.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
+|||+|+|+||.-.|-.|...+. . . -+|.++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~-----~---~-~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP-----D---A-LSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT-----C---S-SEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-----C---C-cEEEEEecC
Confidence 69999999999999888877642 0 0 368888775
No 476
>PLN02366 spermidine synthase
Probab=36.19 E-value=54 Score=35.08 Aligned_cols=103 Identities=15% Similarity=0.239 Sum_probs=55.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccC-CCCCCChhhhccccccCCCCCcccCCCHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 400 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 400 (601)
.||+++|.|..+ +++.++.. -+. ++|.+||-+.-+.+ .|+.+......+..+.-.+ ...+-.+
T Consensus 93 krVLiIGgG~G~--~~rellk~----~~v------~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~v----i~~Da~~ 156 (308)
T PLN02366 93 KKVLVVGGGDGG--VLREIARH----SSV------EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNL----HIGDGVE 156 (308)
T ss_pred CeEEEEcCCccH--HHHHHHhC----CCC------CeEEEEECCHHHHHHHHHhhhhhccccCCCceEE----EEChHHH
Confidence 799999999864 44444332 121 58999999886554 2332322111121111000 1123333
Q ss_pred Hhccc---CCcEEEeecCCC-----CCCCHHHHHHhhhcCCCCCeEEe
Q 007499 401 VVRKV---KPHVLLGLSGVG-----GVFNEEVLKAMRESDSVKPAIFA 440 (601)
Q Consensus 401 ~V~~v---kptvLIG~S~~~-----g~Ft~evv~~Ma~~~~erPIIFa 440 (601)
.++.. +-|++|-=+..| ..||++..+.+.+..++.=++..
T Consensus 157 ~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 157 FLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred HHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 33322 468888644332 46888999988765666555543
No 477
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=36.13 E-value=32 Score=42.47 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 321 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 321 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 38999999999999999888753 43 57778875
No 478
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=36.10 E-value=1.2e+02 Score=30.57 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=41.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChh----hhccccccCCCCCcccCCC
Q 007499 323 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA----AAPFAKDPGDFMGLREGAS 397 (601)
Q Consensus 323 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~----k~~fa~~~~~~~~~~~~~~ 397 (601)
+|+|.|| |..|-.+++.|+.. |- .-+++.+|+...-. ..+.+.+. ...+.. .+ ..+..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~D---l~~~~~ 64 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYAG-NLENLADLEDNPRYRFVK--GD---IGDREL 64 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcch-hhhhhhhhccCCCcEEEE--cC---CcCHHH
Confidence 5888887 77777777766542 21 13677777521100 01111111 011111 01 112346
Q ss_pred HHHHhcccCCcEEEeecCC
Q 007499 398 LLEVVRKVKPHVLLGLSGV 416 (601)
Q Consensus 398 L~e~V~~vkptvLIG~S~~ 416 (601)
+.++++..+||++|=+++.
T Consensus 65 ~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 65 VSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHhhcCCCEEEEcccc
Confidence 8888888889999988864
No 479
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=35.92 E-value=27 Score=38.35 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAA 344 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~ 344 (601)
.+++++|.|++|+|+|..+..-+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhc
Confidence 89999999999999999987743
No 480
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=35.87 E-value=27 Score=37.23 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=23.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 369999999999999877643 564 46666653
No 481
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=35.82 E-value=28 Score=40.64 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
..|+|+|||.+|+..|-.|... .|+ ++.++|++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 6899999999999998887652 254 46677765
No 482
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=35.79 E-value=50 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=23.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 324 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 324 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
|+|+|.|..|..+++.|.+. + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 78999999999998888762 1 479999986
No 483
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.72 E-value=33 Score=34.76 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=53.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH-
Q 007499 323 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV- 401 (601)
Q Consensus 323 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~- 401 (601)
+|+|+|+|..|..+|+.|.+. | .++.++|.+--.... .+++..--.+-... ..+...|.++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~--~~~~~~~~~~v~gd----~t~~~~L~~ag 63 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE--FLADELDTHVVIGD----ATDEDVLEEAG 63 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH--HhhhhcceEEEEec----CCCHHHHHhcC
Confidence 799999999999999998863 3 368888886322211 01100000000000 0123457776
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe-cCCCCC
Q 007499 402 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA-MSNPTM 446 (601)
Q Consensus 402 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa-LSNPt~ 446 (601)
+.+ .|++|-+++. --..-++-.|+.+...-|-|.+ ..||..
T Consensus 64 i~~--aD~vva~t~~--d~~N~i~~~la~~~~gv~~viar~~~~~~ 105 (225)
T COG0569 64 IDD--ADAVVAATGN--DEVNSVLALLALKEFGVPRVIARARNPEH 105 (225)
T ss_pred CCc--CCEEEEeeCC--CHHHHHHHHHHHHhcCCCcEEEEecCHHH
Confidence 655 7889877753 2223444445433223444443 444543
No 484
>PRK06545 prephenate dehydrogenase; Validated
Probab=35.57 E-value=1.2e+02 Score=32.87 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|.|+|+|..|..+|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999988653
No 485
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=35.49 E-value=79 Score=33.28 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=21.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
++++|+|+|..|+..+.++...+ |- .+++.+|+
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 79999999877765555444321 21 36887776
No 486
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=35.28 E-value=3.2e+02 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=28.3
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007499 397 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 439 (601)
Q Consensus 397 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 439 (601)
.+.+.++. .|++|..|.. ..|.-.++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~-e~~~~~~~Ea~a---~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAW-EGFGLVVAEAMA---CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEecccc-cCCChHHHHHHH---cCCCEEE
Confidence 46677776 7889987754 567888999996 4789885
No 487
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=35.21 E-value=30 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 365 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 365 (601)
--++|+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~-----~G-------~~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAE-----HG-------AKALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CC-------CcEEEeccc
Confidence 358999999999999887655 35 368899985
No 488
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.85 E-value=32 Score=37.75 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.||+|+|+|.+|+..|+.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~ 22 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQ 22 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHC
Confidence 3799999999999998887753
No 489
>PRK06199 ornithine cyclodeaminase; Validated
Probab=34.68 E-value=1.2e+02 Score=33.45 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccccCCCCCcccCCCHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 401 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 401 (601)
.++.|+|+|.-+....+.++... ..+ ++|+++|+. .+ ....+...+.+.-..+.......+.+|+
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~----~~--~a~~f~~~~~~~~~~~~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRG----QK--SLDSFATWVAETYPQITNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCC----HH--HHHHHHHHHHHhcCCCceEEEeCCHHHH
Confidence 78999999988777766665531 112 678888874 11 1222222222110000001124789999
Q ss_pred hcccCCcEEEeecCC-------CCCCCHHHHH
Q 007499 402 VRKVKPHVLLGLSGV-------GGVFNEEVLK 426 (601)
Q Consensus 402 V~~vkptvLIG~S~~-------~g~Ft~evv~ 426 (601)
|+. .||++-+++. ..+|..++++
T Consensus 221 v~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 221 VRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 988 8999976431 1678888887
No 490
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=34.61 E-value=74 Score=32.94 Aligned_cols=48 Identities=31% Similarity=0.515 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 302 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 302 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
++..+.+++..+.. .. ++++|+|+|+.|...+.+.. ..|. ++++.+|+
T Consensus 149 ~~ta~~~l~~~~~~-~g---~~vlV~G~G~vG~~~~~~ak-----~~G~------~~vi~~~~ 196 (339)
T cd08239 149 IGTAYHALRRVGVS-GR---DTVLVVGAGPVGLGALMLAR-----ALGA------EDVIGVDP 196 (339)
T ss_pred HHHHHHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHH-----HcCC------CEEEEECC
Confidence 33445555544432 24 89999998866654433332 2453 35777765
No 491
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=34.56 E-value=76 Score=33.23 Aligned_cols=50 Identities=32% Similarity=0.474 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 301 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 301 ~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
..+..+.|+...+..... ++++|.|+|+.|..++.+.. ..|. ++++.+++
T Consensus 161 ~~~ta~~al~~~~~~~~g---~~vlI~g~g~vG~~~~~lak-----~~G~------~~v~~~~~ 210 (361)
T cd08231 161 ALATVLAALDRAGPVGAG---DTVVVQGAGPLGLYAVAAAK-----LAGA------RRVIVIDG 210 (361)
T ss_pred HHHHHHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcCC------CeEEEEcC
Confidence 334445566655554355 89999988765554443322 3453 36777765
No 492
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.41 E-value=38 Score=37.98 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
+...+|+|+|.|-+|+++|++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~ 29 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARH 29 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 3447999999999999988888764
No 493
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=34.36 E-value=91 Score=34.58 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=50.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChh-hhccccccCC--CCCcccCCCH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-AAPFAKDPGD--FMGLREGASL 398 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~-k~~fa~~~~~--~~~~~~~~~L 398 (601)
.|++|+|-.....++++.|.+ .|+.. -....|. ..+.+.+. +...++...+ .....+...+
T Consensus 301 krv~v~g~~~~~~~l~~~L~e-----lG~~~-----~~v~~~~------~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~ 364 (429)
T cd03466 301 RKAAIYGEPDFVVAITRFVLE-----NGMVP-----VLIATGS------ESKKLKEKLEEDLKEYVEKCVILDGADFFDI 364 (429)
T ss_pred CEEEEEcCHHHHHHHHHHHHH-----CCCEE-----EEEEeCC------CChHHHHHHHHHHHhcCCceEEEeCCCHHHH
Confidence 899999988888888888864 46531 1111221 01111111 0111110011 0001133568
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007499 399 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 446 (601)
Q Consensus 399 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 446 (601)
++.++..+||++||-|. .+.+-+.| .-|.| ..+.|..
T Consensus 365 ~~~l~~~~~dliiG~s~-----~~~~a~~~-----~ip~~-~~~~P~~ 401 (429)
T cd03466 365 ESYAKELKIDVLIGNSY-----GRRIAEKL-----GIPLI-RIGFPIH 401 (429)
T ss_pred HHHHHhcCCCEEEECch-----hHHHHHHc-----CCCEE-EecCCce
Confidence 88889999999999774 23444444 35653 4555543
No 494
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=34.11 E-value=19 Score=36.66 Aligned_cols=26 Identities=42% Similarity=0.732 Sum_probs=18.1
Q ss_pred EEEEecCccccccCCCCCccccccchhhh
Q 007499 174 MIVLTDGSRILGLGDLGVQGIGIPIGKLD 202 (601)
Q Consensus 174 viVVTDG~rILGLGDlG~~Gm~I~iGKl~ 202 (601)
++|||||+|||-.-=.| =.|||-|+-
T Consensus 51 ~fi~TDg~~IlavDt~g---y~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTIG---YKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEecC---CCceeeecc
Confidence 79999999999754433 356665543
No 495
>PLN02735 carbamoyl-phosphate synthase
Probab=34.07 E-value=51 Score=41.25 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=45.4
Q ss_pred ceEEEeCcchHHHH-------HHHHHHHHHHHhcCCChhhhcCeEEEEecCcccc-CCCCCCChhhhccccccCCCCCcc
Q 007499 322 QKIVVVGAGSAGLG-------VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT-KERKNLDPAAAPFAKDPGDFMGLR 393 (601)
Q Consensus 322 ~riv~~GAGsAg~G-------iA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~-~~r~~l~~~k~~fa~~~~~~~~~~ 393 (601)
+||+|+|+|...+| -+.+++.++. +.|. +++++|++---. .+ ..+.++ .|..+.
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLk-e~G~-------~Vi~vd~np~t~~~~-~~~aD~--~yi~p~------- 85 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALK-EEGY-------EVVLINSNPATIMTD-PETADR--TYIAPM------- 85 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHH-HcCC-------EEEEEeCCcccccCC-hhhCcE--EEeCCC-------
Confidence 69999999998776 2456777777 6786 688999874210 01 112221 232221
Q ss_pred cCCCHHHHhcccCCcEEE
Q 007499 394 EGASLLEVVRKVKPHVLL 411 (601)
Q Consensus 394 ~~~~L~e~V~~vkptvLI 411 (601)
....+.++++.-+||+++
T Consensus 86 ~~e~v~~ii~~e~~D~Ii 103 (1102)
T PLN02735 86 TPELVEQVIAKERPDALL 103 (1102)
T ss_pred CHHHHHHHHHHhCCCEEE
Confidence 112477888889999988
No 496
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=33.69 E-value=29 Score=37.09 Aligned_cols=76 Identities=18% Similarity=0.385 Sum_probs=38.5
Q ss_pred EEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCccccCCCCCCChhhhccccc--cCCC-------C-Cc
Q 007499 324 IVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD--PGDF-------M-GL 392 (601)
Q Consensus 324 iv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fa~~--~~~~-------~-~~ 392 (601)
|+|-| +||.|-.++++|++.-- ++|+++|++-- .|-..++.|.+. ...+ - ..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----------~~lil~d~~E~------~l~~l~~~l~~~~~~~~v~~~~~~vigDv 63 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----------KKLILFDRDEN------KLYELERELRSRFPDPKVRFEIVPVIGDV 63 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------------SEEEEEES-HH------HHHHHHHHCHHHC--TTCEEEEE--CTSC
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----------CeEEEeCCChh------HHHHHHHHHhhcccccCcccccCceeecc
Confidence 45555 47888888888876421 68999998611 122223333210 0000 0 01
Q ss_pred ccCCCHHHHhcccCCcEEEeecCC
Q 007499 393 REGASLLEVVRKVKPHVLLGLSGV 416 (601)
Q Consensus 393 ~~~~~L~e~V~~vkptvLIG~S~~ 416 (601)
.+...|..+++..+||+++=+++.
T Consensus 64 rd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 64 RDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp CHHHHHHHHTT--T-SEEEE----
T ss_pred cCHHHHHHHHhhcCCCEEEEChhc
Confidence 223458889998899999988764
No 497
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=33.62 E-value=41 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007499 322 QKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 322 ~riv~~GAGsAg~GiA~ll~~~ 343 (601)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999888764
No 498
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.56 E-value=35 Score=38.49 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=0.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 007499 319 FADQKIVVVGAGSAGLGVLKMAVQ 342 (601)
Q Consensus 319 l~~~riv~~GAGsAg~GiA~ll~~ 342 (601)
+...+++|+|||+||+..|+-|..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~ 27 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLR 27 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHH
No 499
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.54 E-value=52 Score=36.04 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007499 302 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 364 (601)
Q Consensus 302 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 364 (601)
|+--+-|+|..+.++.+ |++|+|||..|+ ..+++.-. -|- ++|.++|-
T Consensus 155 LsV~~HAcr~~~vk~Gs----~vLV~GAGPIGl--~t~l~Aka---~GA------~~VVi~d~ 202 (354)
T KOG0024|consen 155 LSVGVHACRRAGVKKGS----KVLVLGAGPIGL--LTGLVAKA---MGA------SDVVITDL 202 (354)
T ss_pred hhhhhhhhhhcCcccCC----eEEEECCcHHHH--HHHHHHHH---cCC------CcEEEeec
Confidence 56667899999988865 999999999864 44444422 243 57887774
No 500
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=33.48 E-value=43 Score=36.55 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=25.2
Q ss_pred CCCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 007499 314 LSLTDFADQKIVVVGAGSAGLGVLKMAVQA 343 (601)
Q Consensus 314 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 343 (601)
..+..|.+.+|.|+|-|+-|.++|+.+...
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~ 38 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDS 38 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 445556779999999999999999998765
Done!