Query 007501
Match_columns 601
No_of_seqs 326 out of 1734
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 11:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0681 Actin-related protein 100.0 5E-103 1E-107 832.7 34.9 514 2-601 115-644 (645)
2 KOG0676 Actin and related prot 100.0 4.1E-64 8.9E-69 530.5 16.2 265 3-597 99-372 (372)
3 PTZ00452 actin; Provisional 100.0 5.1E-63 1.1E-67 530.5 18.1 268 2-597 99-375 (375)
4 PTZ00466 actin-like protein; P 100.0 1.6E-61 3.4E-66 519.8 19.0 267 2-597 105-380 (380)
5 PTZ00281 actin; Provisional 100.0 1.8E-60 4E-65 510.9 17.1 268 2-597 100-376 (376)
6 PTZ00004 actin-2; Provisional 100.0 6.3E-59 1.4E-63 499.3 16.8 269 2-597 100-378 (378)
7 KOG0677 Actin-related protein 100.0 2.5E-56 5.4E-61 441.4 15.4 265 3-595 101-386 (389)
8 PTZ00280 Actin-related protein 100.0 8.3E-56 1.8E-60 480.3 19.1 272 3-597 102-410 (414)
9 PF00022 Actin: Actin; InterP 100.0 3.3E-53 7.2E-58 454.6 15.7 137 457-597 249-393 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 6.4E-51 1.4E-55 435.0 17.6 271 2-597 94-373 (373)
11 KOG0680 Actin-related protein 100.0 2.6E-50 5.6E-55 408.5 18.2 295 1-598 91-400 (400)
12 COG5277 Actin and related prot 100.0 2.6E-50 5.5E-55 438.1 18.3 285 1-597 104-444 (444)
13 KOG0679 Actin-related protein 100.0 3.4E-49 7.4E-54 408.6 18.7 139 453-596 271-425 (426)
14 cd00012 ACTIN Actin; An ubiqui 100.0 1.5E-48 3.2E-53 416.8 17.7 267 2-595 94-371 (371)
15 KOG0678 Actin-related protein 100.0 7.3E-39 1.6E-43 325.6 11.7 280 3-599 106-413 (415)
16 KOG0797 Actin-related protein 99.9 5.2E-21 1.1E-25 204.6 15.0 140 2-148 226-380 (618)
17 PRK13930 rod shape-determining 99.7 3.1E-18 6.8E-23 180.6 7.0 114 3-121 100-221 (335)
18 PRK13929 rod-share determining 99.7 2E-17 4.4E-22 175.5 7.5 113 3-121 98-219 (335)
19 TIGR00904 mreB cell shape dete 99.7 6.3E-17 1.4E-21 171.2 7.6 111 5-121 100-219 (333)
20 PRK13927 rod shape-determining 99.6 6E-16 1.3E-20 163.5 9.4 112 3-120 95-216 (334)
21 PRK13928 rod shape-determining 99.4 1.9E-13 4.1E-18 145.0 6.5 113 2-119 93-214 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 98.8 3.2E-09 7E-14 112.6 5.9 113 2-119 91-212 (326)
23 TIGR01174 ftsA cell division p 96.9 0.0042 9E-08 67.1 10.0 81 28-119 177-257 (371)
24 TIGR02529 EutJ ethanolamine ut 96.3 0.01 2.2E-07 60.6 7.6 96 5-116 63-166 (239)
25 COG0849 ftsA Cell division ATP 94.9 0.035 7.6E-07 61.2 5.3 63 46-119 202-264 (418)
26 PRK15080 ethanolamine utilizat 94.9 0.07 1.5E-06 55.3 7.3 94 6-115 91-192 (267)
27 PRK09472 ftsA cell division pr 94.6 0.14 3.1E-06 56.5 9.3 80 28-118 185-264 (420)
28 PRK13917 plasmid segregation p 93.5 0.15 3.2E-06 55.0 6.4 87 26-114 156-250 (344)
29 PRK15080 ethanolamine utilizat 93.0 0.049 1.1E-06 56.5 1.9 46 516-569 222-267 (267)
30 COG1077 MreB Actin-like ATPase 92.9 0.27 5.9E-06 52.3 7.1 114 3-121 100-222 (342)
31 TIGR02529 EutJ ethanolamine ut 92.5 0.064 1.4E-06 54.8 1.9 43 517-567 196-238 (239)
32 COG1077 MreB Actin-like ATPase 92.0 0.061 1.3E-06 57.0 1.0 86 465-569 243-329 (342)
33 TIGR01175 pilM type IV pilus a 92.0 0.36 7.7E-06 51.4 6.9 60 48-118 189-248 (348)
34 PRK01433 hscA chaperone protei 89.6 0.76 1.7E-05 53.2 7.1 92 5-96 143-245 (595)
35 KOG0681 Actin-related protein 89.5 3.5 7.6E-05 46.7 11.7 71 360-438 423-494 (645)
36 PTZ00400 DnaK-type molecular c 88.9 0.58 1.3E-05 54.8 5.6 91 5-95 176-277 (663)
37 CHL00094 dnaK heat shock prote 88.5 0.24 5.3E-06 57.4 2.1 50 514-571 327-376 (621)
38 TIGR03739 PRTRC_D PRTRC system 87.6 0.35 7.6E-06 51.4 2.5 96 14-110 116-229 (320)
39 PRK09472 ftsA cell division pr 87.4 0.26 5.6E-06 54.4 1.4 50 515-570 328-387 (420)
40 TIGR02350 prok_dnaK chaperone 87.4 0.28 6E-06 56.6 1.6 86 465-571 287-372 (595)
41 CHL00094 dnaK heat shock prote 86.7 0.86 1.9E-05 53.0 5.1 90 5-94 137-237 (621)
42 PRK00290 dnaK molecular chaper 86.4 0.36 7.8E-06 56.1 1.9 86 465-571 289-374 (627)
43 TIGR01991 HscA Fe-S protein as 86.4 1.7 3.7E-05 50.3 7.4 92 5-96 131-233 (599)
44 PRK05183 hscA chaperone protei 86.0 1.8 3.8E-05 50.4 7.2 92 5-96 151-253 (616)
45 PRK00290 dnaK molecular chaper 85.9 0.96 2.1E-05 52.6 5.0 90 5-94 135-235 (627)
46 TIGR02350 prok_dnaK chaperone 85.1 1.1 2.5E-05 51.5 5.1 90 5-94 132-233 (595)
47 PLN03184 chloroplast Hsp70; Pr 84.3 1.2 2.6E-05 52.3 4.9 91 5-95 174-275 (673)
48 PRK13410 molecular chaperone D 84.2 1.4 3E-05 51.7 5.3 90 5-94 137-237 (668)
49 PRK13411 molecular chaperone D 83.9 0.58 1.3E-05 54.7 2.0 87 465-571 290-376 (653)
50 TIGR02259 benz_CoA_red_A benzo 83.5 0.72 1.6E-05 50.6 2.4 52 515-569 381-432 (432)
51 PTZ00400 DnaK-type molecular c 83.2 0.75 1.6E-05 53.9 2.6 86 465-571 330-415 (663)
52 PTZ00186 heat shock 70 kDa pre 83.0 0.59 1.3E-05 54.7 1.6 50 514-571 352-401 (657)
53 TIGR03286 methan_mark_15 putat 82.8 0.64 1.4E-05 51.1 1.7 68 491-570 335-402 (404)
54 TIGR02261 benz_CoA_red_D benzo 82.6 0.76 1.6E-05 47.8 2.1 50 517-569 213-262 (262)
55 TIGR01991 HscA Fe-S protein as 82.1 0.7 1.5E-05 53.5 1.8 87 464-571 274-360 (599)
56 PF00012 HSP70: Hsp70 protein; 81.7 1.6 3.4E-05 50.0 4.4 90 5-94 137-238 (602)
57 COG4972 PilM Tfp pilus assembl 80.6 4.7 0.0001 43.2 7.1 67 49-127 195-261 (354)
58 KOG1029 Endocytic adaptor prot 80.6 11 0.00024 44.4 10.3 41 399-441 429-469 (1118)
59 PF11104 PilM_2: Type IV pilus 80.2 2.8 6E-05 44.8 5.4 57 48-115 181-237 (340)
60 TIGR01174 ftsA cell division p 79.4 0.7 1.5E-05 49.9 0.5 24 517-540 315-339 (371)
61 PTZ00186 heat shock 70 kDa pre 79.1 3 6.5E-05 48.9 5.6 90 5-94 162-262 (657)
62 PRK05183 hscA chaperone protei 78.9 0.93 2E-05 52.7 1.4 48 516-571 329-376 (616)
63 PTZ00121 MAEBL; Provisional 78.3 1.1E+02 0.0024 39.0 18.0 22 168-189 1134-1155(2084)
64 PRK01433 hscA chaperone protei 77.9 1.2 2.6E-05 51.6 1.9 83 466-571 274-356 (595)
65 TIGR03192 benz_CoA_bzdQ benzoy 77.7 1.1 2.4E-05 47.4 1.4 68 491-570 220-287 (293)
66 PRK13410 molecular chaperone D 77.5 1.1 2.4E-05 52.6 1.5 66 493-571 311-376 (668)
67 PLN03184 chloroplast Hsp70; Pr 76.2 1.4 3.1E-05 51.7 1.9 48 516-571 366-413 (673)
68 PTZ00009 heat shock 70 kDa pro 75.9 3.9 8.4E-05 47.9 5.4 90 5-94 142-244 (653)
69 PRK13411 molecular chaperone D 75.6 3.6 7.9E-05 48.2 5.0 90 5-94 135-236 (653)
70 PF06406 StbA: StbA protein; 75.0 2.6 5.5E-05 44.9 3.3 83 25-111 142-225 (318)
71 PTZ00009 heat shock 70 kDa pro 74.4 1.9 4.2E-05 50.4 2.4 85 465-570 295-380 (653)
72 PRK10719 eutA reactivating fac 71.8 1.8 3.8E-05 48.5 1.2 40 46-87 145-184 (475)
73 TIGR00241 CoA_E_activ CoA-subs 71.6 2.6 5.7E-05 43.0 2.3 43 518-568 206-248 (248)
74 PF00012 HSP70: Hsp70 protein; 69.7 1.8 4E-05 49.4 0.7 85 465-570 291-375 (602)
75 COG4820 EutJ Ethanolamine util 69.3 2.8 6.1E-05 42.1 1.8 59 46-115 139-197 (277)
76 PF02541 Ppx-GppA: Ppx/GppA ph 68.5 7.5 0.00016 40.4 5.0 42 46-89 111-152 (285)
77 COG1924 Activator of 2-hydroxy 67.9 2.9 6.3E-05 45.5 1.7 44 519-570 346-389 (396)
78 COG0443 DnaK Molecular chapero 66.2 9.3 0.0002 44.2 5.5 91 4-94 121-222 (579)
79 PRK13317 pantothenate kinase; 60.0 8.5 0.00019 40.4 3.4 73 491-570 200-273 (277)
80 PF11104 PilM_2: Type IV pilus 59.8 5.1 0.00011 42.9 1.8 26 515-540 274-299 (340)
81 PF14450 FtsA: Cell division p 58.1 23 0.0005 32.0 5.5 60 50-120 2-72 (120)
82 KOG2689 Predicted ubiquitin re 57.9 2.5E+02 0.0055 29.6 14.7 56 294-349 97-153 (290)
83 COG0849 ftsA Cell division ATP 57.6 5.9 0.00013 44.0 1.8 59 513-571 318-380 (418)
84 PRK11678 putative chaperone; P 57.3 5 0.00011 45.0 1.2 46 517-570 401-446 (450)
85 PF11239 DUF3040: Protein of u 57.1 6.7 0.00015 33.4 1.7 25 418-442 4-28 (82)
86 KOG2072 Translation initiation 55.4 4.5E+02 0.0098 32.0 16.3 47 290-336 722-768 (988)
87 COG1548 Predicted transcriptio 55.0 6.6 0.00014 40.9 1.5 22 47-68 130-151 (330)
88 PF09726 Macoilin: Transmembra 53.8 4.6E+02 0.01 31.4 17.4 16 370-385 611-626 (697)
89 PF01968 Hydantoinase_A: Hydan 53.0 9.9 0.00021 40.0 2.6 25 46-70 76-100 (290)
90 PRK11678 putative chaperone; P 52.3 27 0.00059 39.2 6.0 63 25-89 187-260 (450)
91 KOG0742 AAA+-type ATPase [Post 51.3 3.9E+02 0.0084 30.3 14.2 63 275-337 197-267 (630)
92 PF01869 BcrAD_BadFG: BadF/Bad 49.6 3 6.4E-05 42.9 -2.0 48 519-569 224-271 (271)
93 TIGR01175 pilM type IV pilus a 49.0 11 0.00023 40.1 2.1 25 516-540 283-307 (348)
94 KOG4364 Chromatin assembly fac 45.5 5E+02 0.011 30.8 14.4 23 77-99 157-179 (811)
95 KOG2891 Surface glycoprotein [ 43.2 4E+02 0.0086 28.3 12.1 19 76-94 214-232 (445)
96 TIGR03706 exo_poly_only exopol 41.6 43 0.00093 35.2 5.2 40 48-89 126-165 (300)
97 PRK11031 guanosine pentaphosph 40.1 30 0.00064 39.3 3.9 39 48-88 133-171 (496)
98 PF14048 MBD_C: C-terminal dom 39.0 40 0.00087 29.9 3.7 23 156-178 73-95 (96)
99 TIGR00570 cdk7 CDK-activating 36.1 4.6E+02 0.01 28.2 11.7 18 218-235 86-103 (309)
100 TIGR03123 one_C_unchar_1 proba 35.7 24 0.00052 37.9 2.2 27 46-72 127-153 (318)
101 COG4820 EutJ Ethanolamine util 35.3 32 0.00069 34.9 2.8 42 516-565 227-268 (277)
102 PTZ00266 NIMA-related protein 33.8 6.6E+02 0.014 31.5 14.1 7 5-11 89-95 (1021)
103 KOG4364 Chromatin assembly fac 33.0 7.9E+02 0.017 29.3 13.5 7 398-404 524-530 (811)
104 PRK10854 exopolyphosphatase; P 32.5 33 0.00071 39.1 2.7 39 47-87 137-175 (513)
105 PRK13917 plasmid segregation p 31.0 23 0.00049 38.2 1.1 44 516-570 292-335 (344)
106 COG0248 GppA Exopolyphosphatas 31.0 32 0.00068 39.2 2.3 54 27-88 115-168 (492)
107 PF06277 EutA: Ethanolamine ut 28.9 30 0.00065 39.1 1.6 51 32-84 125-178 (473)
108 KOG2960 Protein involved in th 26.3 15 0.00032 37.5 -1.2 81 510-595 70-155 (328)
109 PTZ00121 MAEBL; Provisional 25.9 1.6E+03 0.036 29.5 19.4 13 46-58 997-1009(2084)
110 PF12128 DUF3584: Protein of u 25.6 1.5E+03 0.032 28.9 18.0 16 528-543 1008-1023(1201)
111 PTZ00266 NIMA-related protein 25.4 3.2E+02 0.007 34.1 9.5 9 89-97 234-242 (1021)
112 PF02787 CPSase_L_D3: Carbamoy 25.4 88 0.0019 28.9 3.8 36 207-243 59-94 (123)
113 PF13025 DUF3886: Protein of u 24.7 2.1E+02 0.0045 24.1 5.4 34 296-329 30-63 (70)
114 PF07946 DUF1682: Protein of u 24.4 2.4E+02 0.0052 30.2 7.4 9 32-40 67-75 (321)
115 KOG1144 Translation initiation 21.3 3.3E+02 0.0072 32.9 8.0 13 522-534 547-559 (1064)
116 KOG1029 Endocytic adaptor prot 20.8 1.6E+03 0.034 27.5 17.9 24 510-533 783-810 (1118)
117 PRK05082 N-acetylmannosamine k 20.2 98 0.0021 32.0 3.4 52 517-569 235-286 (291)
No 1
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=4.9e-103 Score=832.71 Aligned_cols=514 Identities=39% Similarity=0.629 Sum_probs=451.7
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
++|||||||+.| ++|+.|+|+| ++|.||+++++|+|.+-.+.+ ..+||||++||++|||+||++|..+..
T Consensus 115 idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~-~~~~liis~g~~~T~vipvldG~~il~ 193 (645)
T KOG0681|consen 115 IDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSS-NKSGLIISMGHSATHVIPVLDGRLILK 193 (645)
T ss_pred CCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCccc-CcceEEEecCCCcceeEEEecCchhhh
Confidence 699999999999 8999999999 499999999999997543222 348999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
.++||||||+++++||.+||+.|||.|++.++...++.|++.|||||.||..|+.+|.. +++++.++.++||||++++.
T Consensus 194 ~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-~d~~d~~~~~~qlP~~evl~ 272 (645)
T KOG0681|consen 194 DVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-MDYYDENRNYFQLPYTEVLA 272 (645)
T ss_pred cceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-hhhhhccceEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998 89999999999999997643
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
+ +||.++||+|++ +|||++|+-+|.+|+.++|++- .|+++|+++ .
T Consensus 273 ~-----~e~~l~Ae~kqe--kRlq~~a~lkrv~k~~~re~~r---------------------------edeqql~~~-~ 317 (645)
T KOG0681|consen 273 E-----VELALTAEKKQE--KRLQEQAALKRVEKINARENRR---------------------------EDEQQLESY-N 317 (645)
T ss_pred h-----hhhhccHHHHHH--HHHHHHHHHhhHHHHHHHHhhh---------------------------hhHHHHHHH-H
Confidence 2 259999999999 9999999999999999987722 355666666 2
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
|++..... ....+.+|||++|| +.|+++|+|+|++|++||++++||+|+|.+|++||+
T Consensus 318 -------kaq~e~e~--------~~D~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~------ 375 (645)
T KOG0681|consen 318 -------KAQGEQES--------NLDLEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDARLRARVEKELERL------ 375 (645)
T ss_pred -------Hhhhchhc--------CccHhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHh------
Confidence 33321110 11133689999999 999999999999999999999999999999955544
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhc---c--
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFD---R-- 387 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~---~-- 387 (601)
.+++++|.+|+.+||+++|.++++|++++++++++++++ ++|+|+++|.|||.++.||.+ +
T Consensus 376 ~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~--------------~~r~s~~Sq~rmr~~~~La~~~~~rrk 441 (645)
T KOG0681|consen 376 NKLEEEREENLISWLEELREKLEKLLERISQKKRLKQEL--------------KDRKSHASQLRMRALARLAYEQVVRRK 441 (645)
T ss_pred hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhhhhhhhHhhhHHHHhhhHHHHHHHh
Confidence 556677889999999999999999999999999999999 899999999999999999966 2
Q ss_pred --CCCCCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCe
Q 007501 388 --GKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDF 465 (601)
Q Consensus 388 --~~~~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~ 465 (601)
+...|.|||+|+||+||.++. +..+.+.+.|..++.+|+++||+|++....... + .-...+.+...++
T Consensus 442 ~~~~t~D~fg~~Dedw~vYe~le-------e~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d-~--~~~~~p~~~~e~~ 511 (645)
T KOG0681|consen 442 RKEATPDNFGARDEDWDVYEDLE-------EENKSILEDLKSLNHELLEFDPHFTQYVEGTTD-P--RNGVLPGFTAEDY 511 (645)
T ss_pred cccCCccccccchhhHHHHHHhh-------hhhhhHHHHHHHHHHHHHhhCcccccccccccC-c--ccCcchhHHHhhh
Confidence 345888999999999996663 333445678999999999999999987522110 0 0011122346679
Q ss_pred EEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCC
Q 007501 466 QIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC 545 (601)
Q Consensus 466 ~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~ 545 (601)
++++|+||++||||+|+|+++|.|++||.|++..++.++ |.+.+..|.+||+||||+|++||+.+||.+||..+.|.
T Consensus 512 qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~---p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~ 588 (645)
T KOG0681|consen 512 QLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRY---PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPV 588 (645)
T ss_pred hhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhC---chhhhHhhhhheEeecccccCcCHHHHHHHHhheeccc
Confidence 999999999999999999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred CCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhcccCC
Q 007501 546 GAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL 601 (601)
Q Consensus 546 ~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~~~~~ 601 (601)
+.+|+|+.+.||.++||.|||.||...+|...||||+||+|+|++++++|+.||+.
T Consensus 589 gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~ 644 (645)
T KOG0681|consen 589 GSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIY 644 (645)
T ss_pred CCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999863
No 2
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=4.1e-64 Score=530.48 Aligned_cols=265 Identities=29% Similarity=0.495 Sum_probs=245.8
Q ss_pred CceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccC
Q 007501 3 PFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRG 73 (601)
Q Consensus 3 dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a 73 (601)
+||||+||||+ ++||+|+|+| +++|++.++++ |++| ++||||||||+++||+||||+|++++++
T Consensus 99 e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g-----~ttG~VvD~G~gvt~~vPI~eG~~lp~a 171 (372)
T KOG0676|consen 99 EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASG-----RTTGLVVDSGDGVTHVVPIYEGYALPHA 171 (372)
T ss_pred cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcC-----CeeEEEEEcCCCceeeeecccccccchh
Confidence 69999999999 9999999999 49999999888 9999 9999999999999999999999999999
Q ss_pred ceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCCC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTE 153 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~~ 153 (601)
+.++++||+++|+||+++|..+|++|.+....+++++|||++||||+||.+|+.. ...
T Consensus 172 i~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~-~~~--------------------- 229 (372)
T KOG0676|consen 172 ILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET-ANT--------------------- 229 (372)
T ss_pred hheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc-ccc---------------------
Confidence 9999999999999999999999999999999999999999999999999887643 110
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHH
Q 007501 154 EPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVK 233 (601)
Q Consensus 154 ~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~ 233 (601)
++
T Consensus 230 ---~~--------------------------------------------------------------------------- 231 (372)
T KOG0676|consen 230 ---SS--------------------------------------------------------------------------- 231 (372)
T ss_pred ---cc---------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhH
Q 007501 234 LTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQ 313 (601)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~~ 313 (601)
.
T Consensus 232 ----------------------------------------------------------~--------------------- 232 (372)
T KOG0676|consen 232 ----------------------------------------------------------S--------------------- 232 (372)
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCC
Q 007501 314 EEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDT 393 (601)
Q Consensus 314 ~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d~ 393 (601)
+
T Consensus 233 -------------------------------------l------------------------------------------ 233 (372)
T KOG0676|consen 233 -------------------------------------L------------------------------------------ 233 (372)
T ss_pred -------------------------------------c------------------------------------------
Confidence 1
Q ss_pred CCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCccc
Q 007501 394 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVER 473 (601)
Q Consensus 394 fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~ER 473 (601)
...|.+||| +.|+++.||
T Consensus 234 -------------------------------------------------------------~~~y~lPDg-~~i~i~~er 251 (372)
T KOG0676|consen 234 -------------------------------------------------------------ESSYELPDG-QKITIGNER 251 (372)
T ss_pred -------------------------------------------------------------cccccCCCC-CEEecCCcc
Confidence 012556888 669999999
Q ss_pred ccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEee
Q 007501 474 FRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVR 553 (601)
Q Consensus 474 f~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~ 553 (601)
|+|||+||+|+++|.+..|||+++++||. +||+|+|+.||+||||+||+|++|||.+||++||..+.|..++++|++
T Consensus 252 f~~pE~lFqP~~~g~e~~gi~~~~~~sI~---kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~ 328 (372)
T KOG0676|consen 252 FRCPEVLFQPSLLGMESPGIHELTVNSIM---KCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIA 328 (372)
T ss_pred cccchhcCChhhcCCCCCchhHHHHHHHH---hCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEec
Confidence 99999999999999999999999999996 679999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 554 ALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 554 ~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
+|++.|++|+||||+||+++|+++||||+||+|+|+.++|++||
T Consensus 329 pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 329 PPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 99999999999999999999999999999999999999999998
No 3
>PTZ00452 actin; Provisional
Probab=100.00 E-value=5.1e-63 Score=530.54 Aligned_cols=268 Identities=25% Similarity=0.416 Sum_probs=246.6
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
-+|||||||||+ .+|++|+|+| ++++++++++||+|++| ++||||||+|++.|||+||++|+++.+
T Consensus 99 ~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-----~~tglVVDiG~~~t~v~PV~dG~~l~~ 173 (375)
T PTZ00452 99 EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-----KTIGLVVDSGEGVTHCVPVFEGHQIPQ 173 (375)
T ss_pred ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-----CceeeeecCCCCcceEEEEECCEEecc
Confidence 379999999998 9999999999 49999999999999999 899999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
+++|+++||.++|+||.++|+.+++++.+..+..++++|||++|||+.||.++++.+..
T Consensus 174 ~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~--------------------- 232 (375)
T PTZ00452 174 AITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKE--------------------- 232 (375)
T ss_pred ceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhc---------------------
Confidence 99999999999999999999999988876667889999999999999998655421100
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
T Consensus 233 -------------------------------------------------------------------------------- 232 (375)
T PTZ00452 233 -------------------------------------------------------------------------------- 232 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
T Consensus 233 -------------------------------------------------------------------------------- 232 (375)
T PTZ00452 233 -------------------------------------------------------------------------------- 232 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCC
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 392 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d 392 (601)
.
T Consensus 233 --------------------------------------~----------------------------------------- 233 (375)
T PTZ00452 233 --------------------------------------S----------------------------------------- 233 (375)
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred CCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCcc
Q 007501 393 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE 472 (601)
Q Consensus 393 ~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~E 472 (601)
+ .+..+|.|||| +.|+|+.|
T Consensus 234 -------------------~----------------------------------------~~~~~y~LPDg-~~i~l~~e 253 (375)
T PTZ00452 234 -------------------N----------------------------------------SQDSPYKLPDG-NILTIKSQ 253 (375)
T ss_pred -------------------C----------------------------------------CcCceEECCCC-CEEEeehH
Confidence 0 01134778998 89999999
Q ss_pred cccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEe
Q 007501 473 RFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV 552 (601)
Q Consensus 473 Rf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~ 552 (601)
||+|||+||+|+++|.+..||+++|.+||. +||+|+|+.||+||||+||+|+||||.+||++||+.++|..++++|+
T Consensus 254 r~~~~E~LF~P~~~g~~~~gi~~~i~~si~---~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~ 330 (375)
T PTZ00452 254 KFRCSEILFQPKLIGLEVAGIHHLAYSSIK---KCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVA 330 (375)
T ss_pred HhcCcccccChhhcCCCCCChhHHHHHHHH---hCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEe
Confidence 999999999999999999999999999997 57999999999999999999999999999999999999998899999
Q ss_pred eCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 553 RALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 553 ~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
++++|.+++|+||||||++++|+++||||+||+|+|++++++|||
T Consensus 331 ~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 331 APPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred cCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 999999999999999999999999999999999999999999986
No 4
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.6e-61 Score=519.80 Aligned_cols=267 Identities=26% Similarity=0.399 Sum_probs=245.5
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
.+|||||||+|+ ..|++|+|+| ++++++++++||+|++| ++||||||+|++.|+|+|||+|+++.+
T Consensus 105 ~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-----~~tglVVD~G~~~t~v~PV~~G~~~~~ 179 (380)
T PTZ00466 105 EEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG-----KTNGTVLDCGDGVCHCVSIYEGYSITN 179 (380)
T ss_pred ccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-----CceEEEEeCCCCceEEEEEECCEEeec
Confidence 479999999998 9999999999 39999999999999999 899999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
++.|+++||+++|+||.++|..+++.+.+..+.+++++|||++|||+.||..++.....
T Consensus 180 ~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~--------------------- 238 (380)
T PTZ00466 180 TITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEK--------------------- 238 (380)
T ss_pred ceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccc---------------------
Confidence 99999999999999999999988887766778899999999999999987654321000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
T Consensus 239 -------------------------------------------------------------------------------- 238 (380)
T PTZ00466 239 -------------------------------------------------------------------------------- 238 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
T Consensus 239 -------------------------------------------------------------------------------- 238 (380)
T PTZ00466 239 -------------------------------------------------------------------------------- 238 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCC
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 392 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d 392 (601)
-
T Consensus 239 --------------------------------------~----------------------------------------- 239 (380)
T PTZ00466 239 --------------------------------------A----------------------------------------- 239 (380)
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred CCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCcc
Q 007501 393 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE 472 (601)
Q Consensus 393 ~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~E 472 (601)
....+|.|||| .+|+|+.|
T Consensus 240 ------------------------------------------------------------~~~~~y~LPdg-~~i~l~~e 258 (380)
T PTZ00466 240 ------------------------------------------------------------LTTLPYILPDG-SQILIGSE 258 (380)
T ss_pred ------------------------------------------------------------ccceeEECCCC-cEEEEchH
Confidence 00134678888 89999999
Q ss_pred cccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEe
Q 007501 473 RFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV 552 (601)
Q Consensus 473 Rf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~ 552 (601)
||+|||+||+|+++|.+..||+++|.+||. +||.|+|+.||+||||+||+|+||||.+||++||+.++|..++++|+
T Consensus 259 r~~~~E~LF~P~~~g~~~~gl~~~i~~sI~---~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~ 335 (380)
T PTZ00466 259 RYRAPEVLFNPSILGLEYLGLSELIVTSIT---RADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRIS 335 (380)
T ss_pred HhcCcccccCccccCCCCCCHHHHHHHHHH---hCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEe
Confidence 999999999999999999999999999997 57999999999999999999999999999999999999998899999
Q ss_pred eCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 553 RALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 553 ~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
.+++|.+++|+||||||++++|+++||||+||+|+|+++|+++||
T Consensus 336 ~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 336 APPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred cCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 999999999999999999999999999999999999999999986
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.8e-60 Score=510.87 Aligned_cols=268 Identities=26% Similarity=0.465 Sum_probs=245.6
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
.+||||||||++ ..|++|+|+| ++++++++++||+|++| ++||||||+|++.|||+||++|+++.+
T Consensus 100 ~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g-----~~tglVVDiG~~~t~v~PV~dG~~~~~ 174 (376)
T PTZ00281 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVMDSGDGVSHTVPIYEGYALPH 174 (376)
T ss_pred ccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-----CceEEEEECCCceEEEEEEEecccchh
Confidence 479999999998 9999999999 39999999999999999 899999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
+++|+++||.++|+||+++|..+++.+.+..+.+++++|||++|||+.||..+++....
T Consensus 175 ~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~--------------------- 233 (376)
T PTZ00281 175 AILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAAS--------------------- 233 (376)
T ss_pred heeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhc---------------------
Confidence 99999999999999999999999988876778899999999999999887544321000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
T Consensus 234 -------------------------------------------------------------------------------- 233 (376)
T PTZ00281 234 -------------------------------------------------------------------------------- 233 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
T Consensus 234 -------------------------------------------------------------------------------- 233 (376)
T PTZ00281 234 -------------------------------------------------------------------------------- 233 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCC
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 392 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d 392 (601)
.
T Consensus 234 --------------------------------------~----------------------------------------- 234 (376)
T PTZ00281 234 --------------------------------------S----------------------------------------- 234 (376)
T ss_pred --------------------------------------C-----------------------------------------
Confidence 0
Q ss_pred CCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCcc
Q 007501 393 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE 472 (601)
Q Consensus 393 ~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~E 472 (601)
. .+...|.|||| +.|+|+.|
T Consensus 235 -------------------~----------------------------------------~~~~~y~LPdg-~~i~i~~e 254 (376)
T PTZ00281 235 -------------------S----------------------------------------ALEKSYELPDG-QVITIGNE 254 (376)
T ss_pred -------------------c----------------------------------------ccceeEECCCC-CEEEeeHH
Confidence 0 01134778888 89999999
Q ss_pred cccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEe
Q 007501 473 RFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV 552 (601)
Q Consensus 473 Rf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~ 552 (601)
||.|||+||+|+++|.+..||+++|.+||. +||+|+|+.||+||||+||+|+||||.+||++||+.++|...+++|+
T Consensus 255 r~~~~E~LF~P~~~~~~~~gi~~~i~~sI~---~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~ 331 (376)
T PTZ00281 255 RFRCPEALFQPSFLGMESAGIHETTYNSIM---KCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII 331 (376)
T ss_pred HeeCcccccChhhcCCCCCCHHHHHHHHHH---hCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEe
Confidence 999999999999999999999999999997 57999999999999999999999999999999999999998899999
Q ss_pred eCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 553 RALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 553 ~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
.+++|.+++|+|||+||++++|+++||||+||+|+|+++++++||
T Consensus 332 ~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 332 APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred cCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 999999999999999999999999999999999999999999986
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=6.3e-59 Score=499.28 Aligned_cols=269 Identities=26% Similarity=0.445 Sum_probs=245.5
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
.+||||||||++ ..|++|+|+| ++++++++++||+|++| ++||||||+|++.|+|+||++|+++.+
T Consensus 100 ~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g-----~~tglVVDiG~~~t~v~pV~dG~~l~~ 174 (378)
T PTZ00004 100 EEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYSLPH 174 (378)
T ss_pred ccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC-----CceEEEEECCCCcEEEEEEECCEEeec
Confidence 479999999998 9999999999 39999999999999999 899999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
+++|+++||+++|.||.++|..+++.+.+.....++++|||++|||+.||+++++.....
T Consensus 175 ~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~-------------------- 234 (378)
T PTZ00004 175 AIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGS-------------------- 234 (378)
T ss_pred ceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcC--------------------
Confidence 999999999999999999999998877666678899999999999999987654211000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
T Consensus 235 -------------------------------------------------------------------------------- 234 (378)
T PTZ00004 235 -------------------------------------------------------------------------------- 234 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
T Consensus 235 -------------------------------------------------------------------------------- 234 (378)
T PTZ00004 235 -------------------------------------------------------------------------------- 234 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCC
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 392 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d 392 (601)
.
T Consensus 235 --------------------------------------~----------------------------------------- 235 (378)
T PTZ00004 235 --------------------------------------S----------------------------------------- 235 (378)
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred CCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCcc
Q 007501 393 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE 472 (601)
Q Consensus 393 ~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~E 472 (601)
+ .+...|.|||| ..|+|+.|
T Consensus 236 -------------------~----------------------------------------~~~~~y~lPdg-~~i~l~~e 255 (378)
T PTZ00004 236 -------------------D----------------------------------------KYEESYELPDG-TIITVGSE 255 (378)
T ss_pred -------------------c----------------------------------------ccceEEECCCC-CEEEEcHH
Confidence 0 01134778898 89999999
Q ss_pred cccccccccCCCCCCCC-CCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeE
Q 007501 473 RFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKV 551 (601)
Q Consensus 473 Rf~~pEiLF~Psl~g~~-~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V 551 (601)
||+|||+||+|+++|.+ ..||+++|.+||. +||+|+|+.|++||||+||+|+||||.+||++||+.++|...+++|
T Consensus 256 r~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~---~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v 332 (378)
T PTZ00004 256 RFRCPEALFQPSLIGKEEPPGIHELTFQSIN---KCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKV 332 (378)
T ss_pred HeeCcccccChhhcCccccCChHHHHHHHHH---hCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEE
Confidence 99999999999999998 9999999999997 5799999999999999999999999999999999999999889999
Q ss_pred eeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 552 VRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 552 ~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
..+++|.+++|+|||+||++++|+++||||+||+|+|++++++|||
T Consensus 333 ~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 333 VAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred ecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999999999999999999999999999999999999999999986
No 7
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=2.5e-56 Score=441.42 Aligned_cols=265 Identities=23% Similarity=0.344 Sum_probs=237.7
Q ss_pred CceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccC
Q 007501 3 PFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRG 73 (601)
Q Consensus 3 dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a 73 (601)
++.||+||||+ +|||+|+|.| +++|+++|+||+|||.| ..||+|||||+++|||+|||+|++++|-
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQG-----L~tGvVvDSGDGVTHi~PVye~~~l~HL 175 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQG-----LLTGVVVDSGDGVTHIVPVYEGFVLPHL 175 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhc-----ccceEEEecCCCeeEEeeeecceehhhh
Confidence 57899999999 9999999999 39999999999999999 8999999999999999999999999999
Q ss_pred ceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCCC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTE 153 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~~ 153 (601)
++|++++|+++|.||.+||..|||.|..+.+.+.|+.|||++|||+-|++.|-+....
T Consensus 176 trRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalE---------------------- 233 (389)
T KOG0677|consen 176 TRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALE---------------------- 233 (389)
T ss_pred hhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhh----------------------
Confidence 9999999999999999999999999999999999999999999999887554221100
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHH
Q 007501 154 EPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVK 233 (601)
Q Consensus 154 ~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~ 233 (601)
T Consensus 234 -------------------------------------------------------------------------------- 233 (389)
T KOG0677|consen 234 -------------------------------------------------------------------------------- 233 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhH
Q 007501 234 LTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQ 313 (601)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~~ 313 (601)
T Consensus 234 -------------------------------------------------------------------------------- 233 (389)
T KOG0677|consen 234 -------------------------------------------------------------------------------- 233 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCC
Q 007501 314 EEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDT 393 (601)
Q Consensus 314 ~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d~ 393 (601)
-
T Consensus 234 -------------------------------------T------------------------------------------ 234 (389)
T KOG0677|consen 234 -------------------------------------T------------------------------------------ 234 (389)
T ss_pred -------------------------------------h------------------------------------------
Confidence 0
Q ss_pred CCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCccc
Q 007501 394 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVER 473 (601)
Q Consensus 394 fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~ER 473 (601)
+ .+...|+|||| .+|.+|.||
T Consensus 235 --------------------------------------------------T--------vLv~~YtLPDG-RvIkvG~ER 255 (389)
T KOG0677|consen 235 --------------------------------------------------T--------VLVESYTLPDG-RVIKVGGER 255 (389)
T ss_pred --------------------------------------------------e--------eeeeeeecCCC-cEEEeccee
Confidence 0 01234778999 999999999
Q ss_pred ccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCC---------
Q 007501 474 FRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP--------- 544 (601)
Q Consensus 474 f~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p--------- 544 (601)
|.+||+||+|.+++.+.+|++++++++|+ ..|+|+|..||++|||+||+||.||++.||++||+.+.-
T Consensus 256 FeAPE~LFqP~Li~VE~~G~aellF~~iQ---aaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~ 332 (389)
T KOG0677|consen 256 FEAPEALFQPHLINVEGPGVAELLFNTIQ---AADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTD 332 (389)
T ss_pred ccCchhhcCcceeccCCCcHHHHHHHHHH---HhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChh
Confidence 99999999999999999999999999997 469999999999999999999999999999999998741
Q ss_pred --CCCCeeEeeCCCCcccceehhhhhhcc-CCCCCccccHHHHhhhchHHHHHh
Q 007501 545 --CGAPIKVVRALDPVLDAWRGASVYATK-LQFPQQTFSRMDYYEKGENWLRRY 595 (601)
Q Consensus 545 --~~~~i~V~~~~d~~~~aW~GgSilasl-~~f~~~wITk~EYeE~G~~iv~rk 595 (601)
...+|+|-.||.|.+.+|+||++||++ ..-..+|+||+||+|.|..++.+.
T Consensus 333 ~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 333 KLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred hhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 124678888999999999999999986 445689999999999999998875
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=8.3e-56 Score=480.28 Aligned_cols=272 Identities=23% Similarity=0.379 Sum_probs=235.3
Q ss_pred CceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccc----------cCCCCCCcccceeecCCCceeEEe
Q 007501 3 PFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYN----------QQYGICNKDGLAICPGFSTTHVIP 63 (601)
Q Consensus 3 dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~----------g~~~~~~ttGLVVD~G~~~T~VvP 63 (601)
+||||||||++ ..|++|+|+| ++++++++++||+|++ | .+||||||+|++.|+|+|
T Consensus 102 ~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g-----~~tglVVDiG~~~T~i~P 176 (414)
T PTZ00280 102 EHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG-----TLTGTVIDSGDGVTHVIP 176 (414)
T ss_pred CCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC-----ceeEEEEECCCCceEEEE
Confidence 79999999998 8899999999 3999999999999999 6 899999999999999999
Q ss_pred eeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceee
Q 007501 64 FVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCW 143 (601)
Q Consensus 64 V~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~ 143 (601)
|++|+++.++++|+++||.++|+||.++|..+++.+.+.....++++|||++|||+.||.++++.+...
T Consensus 177 V~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~----------- 245 (414)
T PTZ00280 177 VVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSD----------- 245 (414)
T ss_pred EECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcC-----------
Confidence 999999999999999999999999999999998887666677899999999999999987776432100
Q ss_pred EcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCC
Q 007501 144 QLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVS 223 (601)
Q Consensus 144 QlP~~~~~~~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~ 223 (601)
+ .
T Consensus 246 ------~------~------------------------------------------------------------------ 247 (414)
T PTZ00280 246 ------P------K------------------------------------------------------------------ 247 (414)
T ss_pred ------c------c------------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHH
Q 007501 224 RQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVE 303 (601)
Q Consensus 224 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~ 303 (601)
.....| .
T Consensus 248 ----------------------------------~~~~~~----------------------------~----------- 254 (414)
T PTZ00280 248 ----------------------------------NHFKKY----------------------------T----------- 254 (414)
T ss_pred ----------------------------------cccceE----------------------------E-----------
Confidence 000001 0
Q ss_pred HHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhh
Q 007501 304 EELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTA 383 (601)
Q Consensus 304 e~~~~~~~~~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l 383 (601)
++
T Consensus 255 -----------------------------------------------~~------------------------------- 256 (414)
T PTZ00280 255 -----------------------------------------------AV------------------------------- 256 (414)
T ss_pred -----------------------------------------------CC-------------------------------
Confidence 10
Q ss_pred hhccCCCCCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCC
Q 007501 384 AFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKE 463 (601)
Q Consensus 384 ~~~~~~~~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg 463 (601)
|. .+|
T Consensus 257 ----------------------------d~-----------------------------------------------~~g 261 (414)
T PTZ00280 257 ----------------------------NS-----------------------------------------------VTK 261 (414)
T ss_pred ----------------------------CC-----------------------------------------------CCC
Confidence 00 001
Q ss_pred -CeEEEeCcccccccccccCCCCCCCC-CCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHh
Q 007501 464 -DFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRM 541 (601)
Q Consensus 464 -~~~I~Lg~ERf~~pEiLF~Psl~g~~-~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~ 541 (601)
.+.|.|+.|||+|||+||+|+++|.+ ..||+++|.+||+ +||+|+|+.||+||||+||+|+||||.+||++||+.
T Consensus 262 ~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~---~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 262 KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQ---SCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHH---hCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 15899999999999999999998766 4599999999997 579999999999999999999999999999999999
Q ss_pred hC----------------CCCCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 542 IR----------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 542 l~----------------p~~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
++ |..++|+|+.++++.+++|+||||||++++|+++||||+||+|+|+++|+++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~~~ 410 (414)
T PTZ00280 339 RVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNNV 410 (414)
T ss_pred hccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChHheeeccc
Confidence 97 445678999999999999999999999999999999999999999999998744
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=3.3e-53 Score=454.60 Aligned_cols=137 Identities=38% Similarity=0.611 Sum_probs=128.3
Q ss_pred cccCCCCCeEEEeCcccccccccccCCCCCCCCCC-------CcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCC
Q 007501 457 VRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV-------GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFP 529 (601)
Q Consensus 457 ~y~lpdg~~~I~Lg~ERf~~pEiLF~Psl~g~~~~-------GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~p 529 (601)
.|.|||| +.+.++.|||++||+||+|+.+|.+.. ||+++|.+||+ +||.|+|+.|++|||||||+|+||
T Consensus 249 ~~~lPdg-~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~---~~~~d~r~~l~~nIvl~GG~S~i~ 324 (393)
T PF00022_consen 249 SYELPDG-QTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSIS---KCPIDLRKELLSNIVLTGGSSLIP 324 (393)
T ss_dssp EEE-TTS-SEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHH---TSTTTTHHHHHTTEEEESGGGGST
T ss_pred ecccccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhh---ccccccccccccceEEeccccccc
Confidence 4778998 799999999999999999999999877 99999999997 569999999999999999999999
Q ss_pred ChHHHHHHHHHhhCCCCCCeeEeeCC-CCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 530 GMSERLEAGIRMIRPCGAPIKVVRAL-DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 530 Gf~eRL~~EL~~l~p~~~~i~V~~~~-d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
||.+||+.||..+.|...+++|+.++ +|.+++|+|||+||++++|+++||||+||+|+|+++++||||
T Consensus 325 G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 325 GFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp THHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred chHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999997
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=6.4e-51 Score=434.99 Aligned_cols=271 Identities=28% Similarity=0.475 Sum_probs=242.3
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
.++|||||||++ ..|++++|+| +++++..++++|+|++| .+||||||+|++.|+|+||++|+++.+
T Consensus 94 ~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~~G~~~~~ 168 (373)
T smart00268 94 EEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPVVDGYVLPH 168 (373)
T ss_pred ccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEEECCEEchh
Confidence 369999999998 8999999999 38999999999999999 899999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
+++++++||.+++++|.++|...+..+.......++++||+.+|||+.||..+++.....
T Consensus 169 ~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~-------------------- 228 (373)
T smart00268 169 AIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARES-------------------- 228 (373)
T ss_pred hheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhc--------------------
Confidence 999999999999999999998865544445677899999999999998876554311000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
T Consensus 229 -------------------------------------------------------------------------------- 228 (373)
T smart00268 229 -------------------------------------------------------------------------------- 228 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
.
T Consensus 229 -----------------------------------------------------------~-------------------- 229 (373)
T smart00268 229 -----------------------------------------------------------S-------------------- 229 (373)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCC
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 392 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d 392 (601)
.+
T Consensus 230 --------------------------------------~~---------------------------------------- 231 (373)
T smart00268 230 --------------------------------------ES---------------------------------------- 231 (373)
T ss_pred --------------------------------------cc----------------------------------------
Confidence 00
Q ss_pred CCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCcc
Q 007501 393 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE 472 (601)
Q Consensus 393 ~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~E 472 (601)
+ ..+..|.+|+| ..+.++.|
T Consensus 232 -------------------~----------------------------------------~~~~~~~lpdg-~~~~~~~e 251 (373)
T smart00268 232 -------------------S----------------------------------------KLEKTYELPDG-NTIKVGNE 251 (373)
T ss_pred -------------------c----------------------------------------ccceeEECCCC-CEEEEChH
Confidence 0 01234778888 88999999
Q ss_pred cccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEe
Q 007501 473 RFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV 552 (601)
Q Consensus 473 Rf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~ 552 (601)
||.|||+||+|+++|.+..||+++|.++|+ +||+|+|+.|++|||||||+|++|||.+||++||+.++|...+++|.
T Consensus 252 r~~~~E~lf~p~~~~~~~~~i~~~i~~~i~---~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~ 328 (373)
T smart00268 252 RFRIPEILFKPELIGLEQKGIHELVYESIQ---KCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVI 328 (373)
T ss_pred HeeCchhcCCchhcCCCcCCHHHHHHHHHH---hCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEe
Confidence 999999999999999999999999999997 57999999999999999999999999999999999999988889999
Q ss_pred eCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhc
Q 007501 553 RALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597 (601)
Q Consensus 553 ~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~ 597 (601)
.+++|.+++|+|||++|++++|+.+||||+||+|+|+++++++||
T Consensus 329 ~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 329 APPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred cCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 999999999999999999999999999999999999999999997
No 11
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=2.6e-50 Score=408.51 Aligned_cols=295 Identities=25% Similarity=0.381 Sum_probs=244.2
Q ss_pred CCCceEEEecCcc---cchHHHHHHH-h-----hhhhhhhhhhhhccc---cCCC---CCCcccceeecCCCceeEEeee
Q 007501 1 MFPFHFMFLECML---LSKINMSFLY-A-----ITAFGVDAAFSYKYN---QQYG---ICNKDGLAICPGFSTTHVIPFV 65 (601)
Q Consensus 1 ~~dhpVLlTE~~~---~~Rekm~Eil-~-----al~~~~~sllSlya~---g~~~---~~~ttGLVVD~G~~~T~VvPV~ 65 (601)
+-+|.|++|||.+ +..+.+.||+ + +++=+..++|+-+.. +..+ ....++|||||||+.||||||+
T Consensus 91 ~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 91 GKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 3579999999998 9999999999 2 666666666665541 1111 0134899999999999999999
Q ss_pred CCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEc
Q 007501 66 EGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQL 145 (601)
Q Consensus 66 eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~Ql 145 (601)
.|.++.+|++|||+||+.+|.+|+.+++.|+++.+ -+-.+|++|||.+||||.||.+.|..+... ..-++....|.|
T Consensus 171 ~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvm--dET~vVNeiKEdvcfVSqnF~~~m~~~~~k-~~~~~~~i~YvL 247 (400)
T KOG0680|consen 171 KGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVM--DETYVVNEIKEDVCFVSQNFKEDMDIAKTK-FQENKVMIDYVL 247 (400)
T ss_pred cCcchhhceEEeecchHHHHHHHHHHhhhhhhccc--chhhhhhhhhhheEEechhhHHHHHHHhhc-cccceeEEEEec
Confidence 99999999999999999999999999999988753 234689999999999999999999877642 112344556666
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHH
Q 007501 146 PWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQ 225 (601)
Q Consensus 146 P~~~~~~~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~ 225 (601)
|.=...
T Consensus 248 PDF~T~-------------------------------------------------------------------------- 253 (400)
T KOG0680|consen 248 PDFSTS-------------------------------------------------------------------------- 253 (400)
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 633110
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHH
Q 007501 226 EIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEE 305 (601)
Q Consensus 226 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~ 305 (601)
+ .+|-
T Consensus 254 -------------------------------------k-------------------------~Gyv------------- 258 (400)
T KOG0680|consen 254 -------------------------------------K-------------------------RGYV------------- 258 (400)
T ss_pred -------------------------------------c-------------------------ceeE-------------
Confidence 0 0000
Q ss_pred HHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhh
Q 007501 306 LEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAF 385 (601)
Q Consensus 306 ~~~~~~~~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~ 385 (601)
T Consensus 259 -------------------------------------------------------------------------------- 258 (400)
T KOG0680|consen 259 -------------------------------------------------------------------------------- 258 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCe
Q 007501 386 DRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDF 465 (601)
Q Consensus 386 ~~~~~~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~ 465 (601)
.+ .+..+|.+.+
T Consensus 259 -----------------------------------------------------------------r~---~~vk~~~d~q 270 (400)
T KOG0680|consen 259 -----------------------------------------------------------------RN---EDVKLPEDEQ 270 (400)
T ss_pred -----------------------------------------------------------------ec---CCCCCCCCcc
Confidence 00 0001122238
Q ss_pred EEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCC
Q 007501 466 QIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC 545 (601)
Q Consensus 466 ~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~ 545 (601)
.|+|++|||.+||+||+|+.+|+.++||+|+|..||. .||..+|+.|+.|||++||+++||||.+||..||++++|.
T Consensus 271 ii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~---~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~ 347 (400)
T KOG0680|consen 271 IITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLS---MLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPA 347 (400)
T ss_pred eeeecccccccchhhcChhhcCcccCCchHHHHHHHH---hCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999997 4699999999999999999999999999999999999999
Q ss_pred CCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhcc
Q 007501 546 GAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ 598 (601)
Q Consensus 546 ~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~~ 598 (601)
.+.++|+.|.||..-+|.||+-++.+++|..+||||+||+|+|++++.+|.|.
T Consensus 348 d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~~ 400 (400)
T KOG0680|consen 348 DWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRFI 400 (400)
T ss_pred cceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999998874
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.6e-50 Score=438.14 Aligned_cols=285 Identities=31% Similarity=0.470 Sum_probs=240.8
Q ss_pred CCCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCc--ccceeecCCCceeEEeeeCCcc
Q 007501 1 MFPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNK--DGLAICPGFSTTHVIPFVEGEP 69 (601)
Q Consensus 1 ~~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~t--tGLVVD~G~~~T~VvPV~eG~~ 69 (601)
..+|||+||||++ ++|++|+|++ ++++++++++|++|++| .. +|+|||+|++.|||+||++|++
T Consensus 104 ~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g-----~~~~~g~ViD~G~~~t~v~PV~DG~~ 178 (444)
T COG5277 104 PEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASG-----SSDETGLVIDSGDSVTHVIPVVDGIV 178 (444)
T ss_pred CcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcC-----CCCCceEEEEcCCCceeeEeeecccc
Confidence 3689999999999 9999999999 49999999999999999 67 9999999999999999999999
Q ss_pred cccCceeecccchHhHHHHHHHHhc-----cCCCCCCc---ccHHHHHHHHhhcc-------ccccChHHHHHHHhcCcc
Q 007501 70 VYRGSCRTNIGGYHITDYLKQLLSL-----KHPQHMTK---LTWEKVEDLKMEHC-------YIAPDYFSEAQLFQKGTK 134 (601)
Q Consensus 70 l~~a~~rl~iGG~~lt~yL~kLL~~-----k~~~~~~~---~~~~~v~~IKe~~C-------yVa~Dy~~el~~~~~~~~ 134 (601)
+.++++|+++||+++|.||+++|.. +++.+... .+.++++.||+++| |++.|..++.+.+...
T Consensus 179 l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~-- 256 (444)
T COG5277 179 LPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEK-- 256 (444)
T ss_pred ccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhh--
Confidence 9999999999999999999999999 56666544 56899999999999 7666655443322110
Q ss_pred cccccceeeEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHH
Q 007501 135 EAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 214 (601)
Q Consensus 135 ~~~~~~~~~QlP~~~~~~~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~ 214 (601)
..
T Consensus 257 ------------------------------------------------------------------~~------------ 258 (444)
T COG5277 257 ------------------------------------------------------------------PA------------ 258 (444)
T ss_pred ------------------------------------------------------------------hh------------
Confidence 00
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHH
Q 007501 215 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGR 294 (601)
Q Consensus 215 ~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r 294 (601)
.. .....|.
T Consensus 259 ---------------------------~~--------------~~~~~~~------------------------------ 267 (444)
T COG5277 259 ---------------------------EK--------------STESTFQ------------------------------ 267 (444)
T ss_pred ---------------------------hh--------------ccccccc------------------------------
Confidence 00 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHH
Q 007501 295 QRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR 374 (601)
Q Consensus 295 ~~~k~~k~~e~~~~~~~~~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~ 374 (601)
. +
T Consensus 268 --------------------------------------------------------~------------------~---- 269 (444)
T COG5277 268 --------------------------------------------------------L------------------S---- 269 (444)
T ss_pred --------------------------------------------------------c------------------c----
Confidence 0 0
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCC
Q 007501 375 ERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEI 454 (601)
Q Consensus 375 ~rm~~~~~l~~~~~~~~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~ 454 (601)
.. +...
T Consensus 270 --------------------------------------------------------------------~~------~~~~ 275 (444)
T COG5277 270 --------------------------------------------------------------------KE------TSIA 275 (444)
T ss_pred --------------------------------------------------------------------ch------hccc
Confidence 00 0001
Q ss_pred CccccCCCCCeEEEeCcc-cccccccccCCC--CCCCCCCC---------------------------cchhHHHHhhcC
Q 007501 455 PRVRPLTKEDFQIVLGVE-RFRCPEILFRPN--WVGIDQVG---------------------------LDEMTGVSIRRL 504 (601)
Q Consensus 455 ~~~y~lpdg~~~I~Lg~E-Rf~~pEiLF~Ps--l~g~~~~G---------------------------L~e~I~~sI~~~ 504 (601)
...+.+|++ ..|.++.| ||++||.||+|. ..+++..| |++++++||.
T Consensus 276 ~~~~~~p~~-~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~-- 352 (444)
T COG5277 276 KESKELPDG-EEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQ-- 352 (444)
T ss_pred cccccCCCC-ceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHH--
Confidence 123556777 99999999 999999999999 88777777 9999999996
Q ss_pred CCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHH
Q 007501 505 PTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDY 584 (601)
Q Consensus 505 ~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EY 584 (601)
.||.+.|+.|++|||||||+|++|||.+||++||+.+.|..+.|.|+.+++|.+.+|+|||+||++++|..+||||+||
T Consensus 353 -~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY 431 (444)
T COG5277 353 -ICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEY 431 (444)
T ss_pred -hccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccchhheEeeHHHh
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHhhc
Q 007501 585 YEKGENWLRRYQL 597 (601)
Q Consensus 585 eE~G~~iv~rk~~ 597 (601)
+|+|++++++|||
T Consensus 432 ~e~G~~~~~~~~~ 444 (444)
T COG5277 432 EEHGPDILQEKRF 444 (444)
T ss_pred hhhhhHHHhhccC
Confidence 9999999999986
No 13
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=3.4e-49 Score=408.57 Aligned_cols=139 Identities=29% Similarity=0.488 Sum_probs=128.6
Q ss_pred CCCccccCCCCCeEEEeCcccccccccccCCCCCC------------CCCCCcchhHHHHhhcCCCCChhhHHhhhcCcE
Q 007501 453 EIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVG------------IDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSIL 520 (601)
Q Consensus 453 ~~~~~y~lpdg~~~I~Lg~ERf~~pEiLF~Psl~g------------~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIv 520 (601)
-++++|+||+| ++..+|.|||++||.||+|+++- ....|+++++..||. .||+|+|..|++|||
T Consensus 271 i~~~~~efP~g-~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~---~cDvdiR~~L~~nVi 346 (426)
T KOG0679|consen 271 IPTKHFEFPDG-YTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSIN---MCDVDIRSSLLGNVI 346 (426)
T ss_pred CCCccccCCCC-cccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhc---cChHHHHHHhhccEE
Confidence 46789999999 69999999999999999999762 223699999999996 689999999999999
Q ss_pred EecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCC---CCcccceehhhhhhccCCCCCccccHHHHhhhch-HHHHHhh
Q 007501 521 MTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL---DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGE-NWLRRYQ 596 (601)
Q Consensus 521 LtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~---d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~-~iv~rk~ 596 (601)
||||+|+|+||.+||++||..++|.. +++|+++. +|+|++|+||||||||++|+++||||+||+|.|. ..+.++|
T Consensus 347 vtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 347 VTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred EecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 99999999999999999999999987 99999875 7999999999999999999999999999999999 7888877
No 14
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.5e-48 Score=416.82 Aligned_cols=267 Identities=30% Similarity=0.443 Sum_probs=238.0
Q ss_pred CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
.++||+||||++ ..|++++++| +++++..++++|+|++| .+||||||+|++.|+|+||++|+++.+
T Consensus 94 ~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~i~pv~~G~~~~~ 168 (371)
T cd00012 94 EEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG-----RTTGLVVDSGDGVTHVVPVYDGYVLPH 168 (371)
T ss_pred CCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcC-----CCeEEEEECCCCeeEEEEEECCEEchh
Confidence 379999999998 7899999998 38999999999999999 899999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 152 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~ 152 (601)
++.++++||.++|.+|.++|..+++.+.......++++||+++|||+.|+..++.....
T Consensus 169 ~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~--------------------- 227 (371)
T cd00012 169 AIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAK--------------------- 227 (371)
T ss_pred hheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhc---------------------
Confidence 99999999999999999999998876666678889999999999999876544210000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501 153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 232 (601)
Q Consensus 153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~ 232 (601)
T Consensus 228 -------------------------------------------------------------------------------- 227 (371)
T cd00012 228 -------------------------------------------------------------------------------- 227 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501 233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN 312 (601)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~ 312 (601)
.
T Consensus 228 -----------------------------------------------------------~-------------------- 228 (371)
T cd00012 228 -----------------------------------------------------------E-------------------- 228 (371)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCC
Q 007501 313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 392 (601)
Q Consensus 313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~~d 392 (601)
.
T Consensus 229 --------------------------------------~----------------------------------------- 229 (371)
T cd00012 229 --------------------------------------T----------------------------------------- 229 (371)
T ss_pred --------------------------------------C-----------------------------------------
Confidence 0
Q ss_pred CCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCcc
Q 007501 393 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE 472 (601)
Q Consensus 393 ~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg~E 472 (601)
+ .....|.+|+| ..|.++.|
T Consensus 230 -------------------~----------------------------------------~~~~~~~lpd~-~~i~~~~e 249 (371)
T cd00012 230 -------------------S----------------------------------------LLEKTYELPDG-RTIKVGNE 249 (371)
T ss_pred -------------------C----------------------------------------ccceeEECCCC-eEEEEChH
Confidence 0 00123667888 89999999
Q ss_pred cccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCC--CCCee
Q 007501 473 RFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC--GAPIK 550 (601)
Q Consensus 473 Rf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~--~~~i~ 550 (601)
||.+||+||+|+++|....||+++|..+|. .||.+.|+.+++||+||||+|++|||.+||++||..++|. ...++
T Consensus 250 r~~~~E~lF~p~~~~~~~~~i~~~i~~~i~---~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~ 326 (371)
T cd00012 250 RFRAPEILFNPSLIGSEQVGISEAIYSSIN---KCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVK 326 (371)
T ss_pred HhhChHhcCChhhcCCCcCCHHHHHHHHHH---hCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEE
Confidence 999999999999999999999999999997 4699999999999999999999999999999999999997 55678
Q ss_pred EeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHh
Q 007501 551 VVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY 595 (601)
Q Consensus 551 V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk 595 (601)
|..+++|.+++|+|||+||++++|+++||||+||+|+|++++++|
T Consensus 327 ~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 327 VIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred EccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 888889999999999999999999999999999999999999875
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=7.3e-39 Score=325.60 Aligned_cols=280 Identities=24% Similarity=0.360 Sum_probs=233.2
Q ss_pred CceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCC---CCCCcccceeecCCCceeEEeeeCCccc
Q 007501 3 PFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQY---GICNKDGLAICPGFSTTHVIPFVEGEPV 70 (601)
Q Consensus 3 dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~---~~~~ttGLVVD~G~~~T~VvPV~eG~~l 70 (601)
||-.||||||+ .+|+.+.||| +.+|+++++||+|-++-.. .....||+|||+|+|+|||+||-+||++
T Consensus 106 dh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVi 185 (415)
T KOG0678|consen 106 DHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVI 185 (415)
T ss_pred cceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEE
Confidence 78999999999 9999999999 3999999999999776521 1225699999999999999999999999
Q ss_pred ccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCC
Q 007501 71 YRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPP 150 (601)
Q Consensus 71 ~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~ 150 (601)
-.+++.++++|+++|.+.+.||.++++..|.....+++..||+++||+..|+-+|-.++..
T Consensus 186 gScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d~------------------- 246 (415)
T KOG0678|consen 186 GSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYDR------------------- 246 (415)
T ss_pred eeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhcc-------------------
Confidence 9999999999999999999999999999988889999999999999999998777544321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHH
Q 007501 151 PTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIEST 230 (601)
Q Consensus 151 ~~~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~ 230 (601)
T Consensus 247 -------------------------------------------------------------------------------- 246 (415)
T KOG0678|consen 247 -------------------------------------------------------------------------------- 246 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHH
Q 007501 231 LVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEK 310 (601)
Q Consensus 231 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~ 310 (601)
T Consensus 247 -------------------------------------------------------------------------------- 246 (415)
T KOG0678|consen 247 -------------------------------------------------------------------------------- 246 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCC
Q 007501 311 KNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKG 390 (601)
Q Consensus 311 ~~~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~ 390 (601)
++..|++.- +.+
T Consensus 247 -----------ep~K~ikq~------------------~~~--------------------------------------- 258 (415)
T KOG0678|consen 247 -----------EPAKWIKQY------------------TGI--------------------------------------- 258 (415)
T ss_pred -----------CHHHHHHHH------------------hcc---------------------------------------
Confidence 223333220 000
Q ss_pred CCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeC
Q 007501 391 EDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLG 470 (601)
Q Consensus 391 ~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~~I~Lg 470 (601)
+.| ......|.+|
T Consensus 259 --------------~~i-----------------------------------------------------~~~~~~vDvg 271 (415)
T KOG0678|consen 259 --------------NVI-----------------------------------------------------TGKKFVVDVG 271 (415)
T ss_pred --------------chh-----------------------------------------------------cCCceeeccc
Confidence 000 0001677888
Q ss_pred cccccccccccCCCCCCCCC-CCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhC------
Q 007501 471 VERFRCPEILFRPNWVGIDQ-VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR------ 543 (601)
Q Consensus 471 ~ERf~~pEiLF~Psl~g~~~-~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~------ 543 (601)
-|||..||++|+|.+...+. ..|++++...|+ .||+|.|+-||+||+++||+|+|.+|..|++.+++.++
T Consensus 272 yerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq---~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~ 348 (415)
T KOG0678|consen 272 YERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQ---HCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAE 348 (415)
T ss_pred HHhhcChhhhcCccccCCccCcchHHHhhhhhh---hCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHH
Confidence 99999999999999887665 578999999997 57999999999999999999999999999999998764
Q ss_pred --------CCCCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhh-ccc
Q 007501 544 --------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQ-LQY 599 (601)
Q Consensus 544 --------p~~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~-~~~ 599 (601)
|....|+|+...-..+++|.|||+|||.+.|-..+=||++|+|+||+|+.... ||+
T Consensus 349 s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~~~~f~~ 413 (415)
T KOG0678|consen 349 SEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRTNPVFGV 413 (415)
T ss_pred hcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhcCchhcc
Confidence 22345777776667899999999999999999999999999999999988754 443
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.85 E-value=5.2e-21 Score=204.60 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred CCceEEEecCcc----cchHHHHHHH-----hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML----LSKINMSFLY-----AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~----~~Rekm~Eil-----~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
+.|.++++-|-. ..++.++=+| +++.+...+|.+.|++| .++++|||+|.+.|+|+.|=+|.++++
T Consensus 226 ~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG-----lss~CVVdiGAQkTsIaCVEdGvs~~n 300 (618)
T KOG0797|consen 226 FQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG-----LSSACVVDIGAQKTSIACVEDGVSLPN 300 (618)
T ss_pred cceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC-----ccceeEEEccCcceeEEEeecCccccC
Confidence 356677776666 4444444444 37778899999999999 789999999999999999999999999
Q ss_pred CceeecccchHhHHHHHHHHhccCC-----CCCCcccHHHHHHHHhhcccccc-ChHHHHHHHhcCcccccccceeeEcC
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHP-----QHMTKLTWEKVEDLKMEHCYIAP-DYFSEAQLFQKGTKEAEHKTRCWQLP 146 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~-----~~~~~~~~~~v~~IKe~~CyVa~-Dy~~el~~~~~~~~~~~~~~~~~QlP 146 (601)
+-.++++||.++|..|..||...+. ...+.++..+++.+|+++|-+.. ++..++..+.. ...+..+.+|++-
T Consensus 301 tri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~--R~pn~~~~kytfk 378 (618)
T KOG0797|consen 301 TRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSY--REPNPPTLKYTFK 378 (618)
T ss_pred ceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhc--cCCCCcceeeeee
Confidence 9999999999999999998876543 23467889999999999999875 66666666653 2334455566665
Q ss_pred CC
Q 007501 147 WV 148 (601)
Q Consensus 147 ~~ 148 (601)
..
T Consensus 379 ~~ 380 (618)
T KOG0797|consen 379 LG 380 (618)
T ss_pred cc
Confidence 43
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.73 E-value=3.1e-18 Score=180.62 Aligned_cols=114 Identities=13% Similarity=-0.024 Sum_probs=92.9
Q ss_pred CceEEEecCcc---cchHHHHHHH-----hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCc
Q 007501 3 PFHFMFLECML---LSKINMSFLY-----AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGS 74 (601)
Q Consensus 3 dhpVLlTE~~~---~~Rekm~Eil-----~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~ 74 (601)
.++|++|.|+. ..|+.+.+.+ +.+++.+++++|+|++|.+....++++|||+|+++|+|+||.+|.++. .
T Consensus 100 ~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~ 177 (335)
T PRK13930 100 KPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--S 177 (335)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--e
Confidence 47899999987 7787777777 378999999999999983211125689999999999999999998875 5
Q ss_pred eeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccC
Q 007501 75 CRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 121 (601)
Q Consensus 75 ~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~D 121 (601)
..+++||.++|++|.++|..++. + ..+...++.+|+++||++.+
T Consensus 178 ~~~~lGG~~id~~l~~~l~~~~~-~--~~~~~~ae~~K~~~~~~~~~ 221 (335)
T PRK13930 178 ESIRVAGDEMDEAIVQYVRRKYN-L--LIGERTAEEIKIEIGSAYPL 221 (335)
T ss_pred cCcCchhHHHHHHHHHHHHHHhC-C--CCCHHHHHHHHHHhhcCcCC
Confidence 67899999999999999987642 2 24567899999999998765
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.69 E-value=2e-17 Score=175.46 Aligned_cols=113 Identities=13% Similarity=0.013 Sum_probs=91.1
Q ss_pred CceEEEecCcc---cchHHHHHHH-----hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee-eCCcccccC
Q 007501 3 PFHFMFLECML---LSKINMSFLY-----AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF-VEGEPVYRG 73 (601)
Q Consensus 3 dhpVLlTE~~~---~~Rekm~Eil-----~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV-~eG~~l~~a 73 (601)
.++|++|.|+. ..|+.+.+.+ +.+++..++++|.|+.|.+.....+++|||+|+++|+|+|| ++|....
T Consensus 98 ~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~-- 175 (335)
T PRK13929 98 KPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC-- 175 (335)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe--
Confidence 36899999998 9999999977 37889999999999987332224689999999999999999 6665433
Q ss_pred ceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 121 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~D 121 (601)
..+++||.++|.+|.++|...+ .+. .+...++.||+++||++.+
T Consensus 176 -~~~~~GG~~id~~l~~~l~~~~-~~~--~~~~~AE~iK~~l~~~~~~ 219 (335)
T PRK13929 176 -HSIRIGGDQLDEDIVSFVRKKY-NLL--IGERTAEQVKMEIGYALIE 219 (335)
T ss_pred -cCcCCHHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHHcCCCCC
Confidence 3368999999999999997644 332 3567899999999998654
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.67 E-value=6.3e-17 Score=171.18 Aligned_cols=111 Identities=12% Similarity=-0.017 Sum_probs=88.6
Q ss_pred eEEEecCcc---cchHHHHHHH-----hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee-eCCcccccCce
Q 007501 5 HFMFLECML---LSKINMSFLY-----AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF-VEGEPVYRGSC 75 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil-----~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV-~eG~~l~~a~~ 75 (601)
++++|.|+. ..|+.+.+.+ +.+++.+++++|+|+.|.+....++++|||+|+++|+|+|| ++|+++.+.
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~-- 177 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS-- 177 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC--
Confidence 599999987 7777766666 37889999999999998321123678999999999999999 888776654
Q ss_pred eecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccC
Q 007501 76 RTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 121 (601)
Q Consensus 76 rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~D 121 (601)
+++||.++|.+|.++|..++. ...+...++.||+++|+++.+
T Consensus 178 -~~lGG~did~~l~~~l~~~~~---~~~~~~~ae~lK~~l~~~~~~ 219 (333)
T TIGR00904 178 -IRVGGDEFDEAIINYIRRTYN---LLIGEQTAERIKIEIGSAYPL 219 (333)
T ss_pred -ccchHHHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHhccccc
Confidence 489999999999999876542 234677899999999988654
No 20
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.63 E-value=6e-16 Score=163.47 Aligned_cols=112 Identities=11% Similarity=-0.040 Sum_probs=85.1
Q ss_pred Cce-EEEecCcc--cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee-eCCccccc
Q 007501 3 PFH-FMFLECML--LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF-VEGEPVYR 72 (601)
Q Consensus 3 dhp-VLlTE~~~--~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV-~eG~~l~~ 72 (601)
+|| +++|.|.. ..++++++.+ +.+++.+++++|.|+.|.+....+.++|||+|+++|+|+|| ++|++..+
T Consensus 95 ~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~ 174 (334)
T PRK13927 95 PSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSK 174 (334)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeC
Confidence 464 56666655 6677777766 27899999999999998321112457999999999999999 88877665
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhcccccc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAP 120 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~ 120 (601)
+ +++||.++|.+|.++|..++ .+ ..+...++.||+.+||+..
T Consensus 175 ~---~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~ 216 (334)
T PRK13927 175 S---VRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYP 216 (334)
T ss_pred C---cCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCC
Confidence 5 47999999999999997543 22 2456789999999998764
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.41 E-value=1.9e-13 Score=145.01 Aligned_cols=113 Identities=10% Similarity=-0.062 Sum_probs=84.3
Q ss_pred CCce-EEEecCcc--cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFH-FMFLECML--LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhp-VLlTE~~~--~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
+.+| +++|.|.. ..+.++++.+ +.+++.++++.|.|+.|......+.++|||+|+++|.|.+|..|.++..
T Consensus 93 ~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~ 172 (336)
T PRK13928 93 FSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS 172 (336)
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe
Confidence 4678 88999776 5555555544 3788999999999998832111367999999999999999999987754
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA 119 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa 119 (601)
..+++||.++|..|.+.|..++ .+ .++...++.+|+.+|++.
T Consensus 173 --~~~~lGG~did~~i~~~l~~~~-~~--~~~~~~ae~lK~~~~~~~ 214 (336)
T PRK13928 173 --SSIKVAGDKFDEAIIRYIRKKY-KL--LIGERTAEEIKIKIGTAF 214 (336)
T ss_pred --CCcCCHHHHHHHHHHHHHHHHh-ch--hcCHHHHHHHHHHhcccc
Confidence 4689999999999999987543 22 134456777777777653
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.84 E-value=3.2e-09 Score=112.55 Aligned_cols=113 Identities=13% Similarity=-0.008 Sum_probs=82.4
Q ss_pred CCceEEEecCcc----cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501 2 FPFHFMFLECML----LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 2 ~dhpVLlTE~~~----~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
+.+|-++.=.|. ..|..+.+.+ + .+++...++.+.++.|.+.......+|||+|.++|.|.=|.-|-++.
T Consensus 91 ~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~- 169 (326)
T PF06723_consen 91 FFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA- 169 (326)
T ss_dssp SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-
Confidence 345655555554 7888888888 2 88999999999999984322234569999999999999999998765
Q ss_pred CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA 119 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa 119 (601)
.+.+.+||.++++-+.+++..+|. + .+...+++.||++++++.
T Consensus 170 -s~si~~gG~~~DeaI~~~ir~~y~-l--~Ig~~tAE~iK~~~g~~~ 212 (326)
T PF06723_consen 170 -SRSIRIGGDDIDEAIIRYIREKYN-L--LIGERTAEKIKIEIGSAS 212 (326)
T ss_dssp -EEEES-SHHHHHHHHHHHHHHHHS-E--E--HHHHHHHHHHH-BSS
T ss_pred -EEEEEecCcchhHHHHHHHHHhhC-c--ccCHHHHHHHHHhcceee
Confidence 556789999999999999998874 3 578899999999999875
No 23
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=96.93 E-value=0.0042 Score=67.10 Aligned_cols=81 Identities=21% Similarity=0.139 Sum_probs=59.7
Q ss_pred hhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHH
Q 007501 28 FGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEK 107 (601)
Q Consensus 28 ~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~ 107 (601)
+..+++.+.++...........+|||+|+++|.+..+.+|.++. ++.+++||.++|..+.+.|. .+...
T Consensus 177 i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~---------~~~~~ 245 (371)
T TIGR01174 177 IVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALR---------TPLEE 245 (371)
T ss_pred EEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhC---------CCHHH
Confidence 34445544444331111123579999999999999999998654 57789999999999887653 46788
Q ss_pred HHHHHhhccccc
Q 007501 108 VEDLKMEHCYIA 119 (601)
Q Consensus 108 v~~IKe~~CyVa 119 (601)
++.+|..+|++.
T Consensus 246 AE~lK~~~~~~~ 257 (371)
T TIGR01174 246 AERIKIKYGCAS 257 (371)
T ss_pred HHHHHHHeeEec
Confidence 999999999864
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.34 E-value=0.01 Score=60.59 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=70.7
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCcee
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCR 76 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~r 76 (601)
.+++|=|.. ..|..+.+.+ + -+.+.+.++.+..+.+ ...++|||+|.++|.+.=+..|.++. ++-
T Consensus 63 ~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~-----~~~~~vvDiGggtt~i~i~~~G~i~~--~~~ 135 (239)
T TIGR02529 63 HAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQ-----IKNGAVVDVGGGTTGISILKKGKVIY--SAD 135 (239)
T ss_pred cEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhc-----CCCcEEEEeCCCcEEEEEEECCeEEE--EEe
Confidence 467777765 7787777777 2 4455666666555555 33579999999999988788887665 567
Q ss_pred ecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhcc
Q 007501 77 TNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHC 116 (601)
Q Consensus 77 l~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~C 116 (601)
+++||.++|+.+.+.+. ++...++.+|..++
T Consensus 136 ~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~ 166 (239)
T TIGR02529 136 EPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHK 166 (239)
T ss_pred eecchHHHHHHHHHHhC---------CCHHHHHHHHHhcC
Confidence 79999999998876653 56678888887643
No 25
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=94.90 E-value=0.035 Score=61.23 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=54.2
Q ss_pred CcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccc
Q 007501 46 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA 119 (601)
Q Consensus 46 ~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa 119 (601)
...+++||+|.++|.|.=+.+|.+....+ +++||.++|.=+.+.|. .+.+.++.||.+++...
T Consensus 202 elGv~lIDiG~GTTdIai~~~G~l~~~~~--ipvgG~~vT~DIa~~l~---------t~~~~AE~iK~~~g~a~ 264 (418)
T COG0849 202 ELGVALIDIGGGTTDIAIYKNGALRYTGV--IPVGGDHVTKDIAKGLK---------TPFEEAERIKIKYGSAL 264 (418)
T ss_pred hcCeEEEEeCCCcEEEEEEECCEEEEEee--EeeCccHHHHHHHHHhC---------CCHHHHHHHHHHcCccc
Confidence 56789999999999999999998776554 99999999999999884 46788999999987543
No 26
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=94.90 E-value=0.07 Score=55.35 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=62.1
Q ss_pred EEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCceee
Q 007501 6 FMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRT 77 (601)
Q Consensus 6 VLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl 77 (601)
|.++=|.. .+|..+...+ + -..+...+..+.++.+ ...++|||+|.++|.+.=+.+|.++.. .-+
T Consensus 91 v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~-----~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~ 163 (267)
T PRK15080 91 AATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLG-----IDNGAVVDIGGGTTGISILKDGKVVYS--ADE 163 (267)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhC-----CCCcEEEEeCCCcEEEEEEECCeEEEE--ecc
Confidence 33444443 4666666666 2 1123333333334444 235799999999999888888876654 567
Q ss_pred cccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhc
Q 007501 78 NIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEH 115 (601)
Q Consensus 78 ~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~ 115 (601)
++||.++|+-+.+.|. ++.+.++.+|...
T Consensus 164 ~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~ 192 (267)
T PRK15080 164 PTGGTHMSLVLAGAYG---------ISFEEAEQYKRDP 192 (267)
T ss_pred cCchHHHHHHHHHHhC---------CCHHHHHHHHhcc
Confidence 9999999999987763 4567778887764
No 27
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.62 E-value=0.14 Score=56.47 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=58.4
Q ss_pred hhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHH
Q 007501 28 FGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEK 107 (601)
Q Consensus 28 ~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~ 107 (601)
+..+++.+.++...+.......+|||+|.++|.+.=+.+|.++ .+..+++||.++|+.+..-|. ++...
T Consensus 185 iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~dIa~~l~---------i~~~~ 253 (420)
T PRK09472 185 LIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTSDIAYAFG---------TPPSD 253 (420)
T ss_pred EEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHHHHHHHhC---------cCHHH
Confidence 3345555555443211113457899999999999999999765 566699999999999987663 46788
Q ss_pred HHHHHhhcccc
Q 007501 108 VEDLKMEHCYI 118 (601)
Q Consensus 108 v~~IKe~~CyV 118 (601)
++.||..++..
T Consensus 254 AE~lK~~~g~~ 264 (420)
T PRK09472 254 AEAIKVRHGCA 264 (420)
T ss_pred HHHHHHhccee
Confidence 99999888754
No 28
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=93.50 E-value=0.15 Score=54.99 Aligned_cols=87 Identities=13% Similarity=-0.109 Sum_probs=63.6
Q ss_pred hhhhhhhhhhhccccCC--------CCCCcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCC
Q 007501 26 TAFGVDAAFSYKYNQQY--------GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP 97 (601)
Q Consensus 26 l~~~~~sllSlya~g~~--------~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~ 97 (601)
+.+.+|++-++|..... .......+|||+|+++|.++-+-+|.++...+..++.|..++-+.+.+.+..+.+
T Consensus 156 V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~~ 235 (344)
T PRK13917 156 VKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKEE 235 (344)
T ss_pred EEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhCC
Confidence 55667777776543310 0012346999999999999999999999999999999999999999999965544
Q ss_pred CCCCcccHHHHHHHHhh
Q 007501 98 QHMTKLTWEKVEDLKME 114 (601)
Q Consensus 98 ~~~~~~~~~~v~~IKe~ 114 (601)
.. .++...++.+.+.
T Consensus 236 ~~--~~~~~~ie~~l~~ 250 (344)
T PRK13917 236 GA--SITPYMLEKGLEY 250 (344)
T ss_pred CC--CCCHHHHHHHHHc
Confidence 32 3566777766643
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=93.03 E-value=0.049 Score=56.48 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=37.2
Q ss_pred hcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhh
Q 007501 516 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 516 ~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
...|+||||+|++||+.+.+.+.+.. | |..+++|.+++=+|+++++
T Consensus 222 ~~~IvLtGG~s~lpgl~e~l~~~lg~--~------v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 222 VEDIYLVGGTCCLPGFEEVFEKQTGL--P------VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCEEEEECCcccchhHHHHHHHHhCC--C------cccCCCchHHHHHHHHhhC
Confidence 46899999999999999999998841 2 2346789999999988754
No 30
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=92.90 E-value=0.27 Score=52.28 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=86.1
Q ss_pred CceEEEecCcc----cchHHHHHHH-h----hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccC
Q 007501 3 PFHFMFLECML----LSKINMSFLY-A----ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRG 73 (601)
Q Consensus 3 dhpVLlTE~~~----~~Rekm~Eil-~----al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a 73 (601)
..|.+++-.|+ .-|.-+-|-. + .+++...++.+-...|.+-.--+-++|||+|.++|.|.=|.-|-++...
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~ 179 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSS 179 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEe
Confidence 45667777666 5666666666 2 6788888888888887431112348999999999999888777666655
Q ss_pred ceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 121 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~D 121 (601)
+. -+||..+++-+..++..+|.. .+....++.||.+.+|+..+
T Consensus 180 Si--rv~GD~~De~Ii~yvr~~~nl---~IGe~taE~iK~eiG~a~~~ 222 (342)
T COG1077 180 SV--RVGGDKMDEAIIVYVRKKYNL---LIGERTAEKIKIEIGSAYPE 222 (342)
T ss_pred eE--EEecchhhHHHHHHHHHHhCe---eecHHHHHHHHHHhcccccc
Confidence 54 479999999999999877654 46788899999999998753
No 31
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=92.53 E-value=0.064 Score=54.77 Aligned_cols=43 Identities=21% Similarity=0.553 Sum_probs=34.6
Q ss_pred cCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhh
Q 007501 517 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASV 567 (601)
Q Consensus 517 ~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSi 567 (601)
..|+||||+|++||+.+.|.+.+.. | |..+.+|.+++=+|+++
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~lg~--~------v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQLGL--N------VIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHhCC--C------cccCCCCCeehhheeec
Confidence 4799999999999999999998742 2 23467889988888764
No 32
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=92.04 E-value=0.061 Score=57.01 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=65.4
Q ss_pred eEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcC-cEEecCCCCCCChHHHHHHHHHhhC
Q 007501 465 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSS-ILMTGGCCLFPGMSERLEAGIRMIR 543 (601)
Q Consensus 465 ~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~N-IvLtGG~S~~pGf~eRL~~EL~~l~ 543 (601)
..+.++.+..+ |.|=.| -.+|.+.|...+. .||+++-.+.+.+ |+||||+|++.||.+.|..|.
T Consensus 243 k~i~i~s~ev~--eal~~~------v~~Iveair~~Le---~tpPeL~~DI~ergivltGGGalLrglD~~i~~et---- 307 (342)
T COG1077 243 KTITINSEEIA--EALEEP------LNGIVEAIRLVLE---KTPPELAADIVERGIVLTGGGALLRGLDRLLSEET---- 307 (342)
T ss_pred eeEEEcHHHHH--HHHHHH------HHHHHHHHHHHHh---hCCchhcccHhhCceEEecchHHhcCchHhHHhcc----
Confidence 56677666543 333222 2468888888886 4699999999999 999999999999999998884
Q ss_pred CCCCCeeEeeCCCCcccceehhhhhh
Q 007501 544 PCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 544 p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
.+-|+.+++|...+=+|+....
T Consensus 308 ----~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 308 ----GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred ----CCeEEECCChHHHHHhccchhh
Confidence 3556778888888888877654
No 33
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=92.01 E-value=0.36 Score=51.42 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=50.7
Q ss_pred ccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhcccc
Q 007501 48 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI 118 (601)
Q Consensus 48 tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyV 118 (601)
+.++||+|+++|+++-+.+|.++. ++.+++||.++|+-+.+.+. ++.+.++.+|...++.
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~ 248 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLP 248 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEEE--EEEeechHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCC
Confidence 488999999999999999997665 67799999999999887653 4678899999887653
No 34
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=89.63 E-value=0.76 Score=53.18 Aligned_cols=92 Identities=14% Similarity=-0.026 Sum_probs=58.9
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee--eCCcc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV--~eG~~-l~~a 73 (601)
-+++|=|.. ..|+.+.+.. + -+.+.+.+..|.++.|.......+-||+|+|.|++.|.=+ .+|.. +...
T Consensus 143 ~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 143 KAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 468888887 7777777666 2 3445566665655555211113457999999999886544 34522 1112
Q ss_pred ceeecccchHhHHHHHHHHhccC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKH 96 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~ 96 (601)
..-..+||.+++.-|...+..+.
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~~~ 245 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCNKF 245 (595)
T ss_pred cCCcccChHHHHHHHHHHHHHhc
Confidence 22347999999999988887654
No 35
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=89.52 E-value=3.5 Score=46.67 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=43.8
Q ss_pred CCCCCCcccccHHHHHHHHHhhhhhhcc-CCCCCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCC
Q 007501 360 SGGVGRGERLNAAQRERMRLLTTAAFDR-GKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPT 438 (601)
Q Consensus 360 ~~~~~~~~r~s~a~~~rm~~~~~l~~~~-~~~~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~ 438 (601)
.++++...|++.+.+.| |...+++.|. |..|.++-+= +|.+-+.+= +-+|....+.+|.+++..+-.++++
T Consensus 423 q~rmr~~~~La~~~~~r-rk~~~~t~D~fg~~Dedw~vY-e~lee~~~~------~~~dl~~l~~~L~e~Dp~F~~~~~~ 494 (645)
T KOG0681|consen 423 QLRMRALARLAYEQVVR-RKRKEATPDNFGARDEDWDVY-EDLEEENKS------ILEDLKSLNHELLEFDPHFTQYVEG 494 (645)
T ss_pred HhhhHHHHhhhHHHHHH-HhcccCCccccccchhhHHHH-HHhhhhhhh------HHHHHHHHHHHHHhhCccccccccc
Confidence 33455567888888888 7888888773 3222223221 333333321 2345667778899999988888844
No 36
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=88.92 E-value=0.58 Score=54.81 Aligned_cols=91 Identities=9% Similarity=-0.103 Sum_probs=61.3
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee--eCCccc-ccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEPV-YRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV--~eG~~l-~~a 73 (601)
-++||=|+. ..|..+.+.. + .+.+.+.+..+.+++|.......+-||+|+|.++|.|.=+ .+|... ...
T Consensus 176 ~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 176 QAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 478888887 7788777766 2 4556666666666665211123578999999999988644 355332 222
Q ss_pred ceeecccchHhHHHHHHHHhcc
Q 007501 74 SCRTNIGGYHITDYLKQLLSLK 95 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k 95 (601)
..-.++||.+++..|...|..+
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHHHH
Confidence 3345899999999998777543
No 37
>CHL00094 dnaK heat shock protein 70
Probab=88.50 E-value=0.24 Score=57.40 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=38.8
Q ss_pred hhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 514 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 514 ~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
.-...|+|+||+|.+|++.+.|..-+.. .+....+|..++.+||+++|..
T Consensus 327 ~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 327 SDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred hhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence 3458899999999999999999876532 1223446788999999999864
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=87.65 E-value=0.35 Score=51.35 Aligned_cols=96 Identities=14% Similarity=-0.041 Sum_probs=66.1
Q ss_pred cchHHHHHHH-h-------------hhhhhhhhhhhhcccc----CCCCCCcccceeecCCCceeEEeeeCCcccccCce
Q 007501 14 LSKINMSFLY-A-------------ITAFGVDAAFSYKYNQ----QYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC 75 (601)
Q Consensus 14 ~~Rekm~Eil-~-------------al~~~~~sllSlya~g----~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~ 75 (601)
..|+.+.+.+ + .+.+.+|++-++|..- .........+|||+|+.+|.++-+-++.+....+.
T Consensus 116 ~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~ 195 (320)
T TIGR03739 116 TYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSG 195 (320)
T ss_pred HHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccC
Confidence 4667777776 1 3455666665655431 00001345799999999999998888888888888
Q ss_pred eecccchHhHHHHHHHHhccCCCCCCcccHHHHHH
Q 007501 76 RTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVED 110 (601)
Q Consensus 76 rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~ 110 (601)
.++.|-..+.+-+.+.|+.++..- ...+.+.++.
T Consensus 196 s~~~G~~~~~~~I~~~i~~~~g~~-~~~~~~~i~~ 229 (320)
T TIGR03739 196 SVNGGMSDIYRLLAAEISKDIGTP-AYRDIDRIDL 229 (320)
T ss_pred CchhHHHHHHHHHHHHHHhhcCCC-CccCHHHHHH
Confidence 999999999999999998764321 0124446665
No 39
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=87.44 E-value=0.26 Score=54.44 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=37.7
Q ss_pred hhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeC----------CCCcccceehhhhhhc
Q 007501 515 LTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRA----------LDPVLDAWRGASVYAT 570 (601)
Q Consensus 515 L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~----------~d~~~~aW~GgSilas 570 (601)
+.+.||||||+|.+||+.+.+.+-+.. ++++..| .+|.|++=+|...++.
T Consensus 328 ~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 328 LAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred CCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 456699999999999999998877652 2333222 3678888889888875
No 40
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=87.41 E-value=0.28 Score=56.56 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=55.3
Q ss_pred eEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCC
Q 007501 465 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 544 (601)
Q Consensus 465 ~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p 544 (601)
..+.|..+.| |-++.|-+ ..+..+|..++... .+...-...|+|+||+|.+|++.+.|..-+..
T Consensus 287 ~~~~itr~~f---e~l~~~l~-----~~~~~~i~~~l~~a-----~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--- 350 (595)
T TIGR02350 287 LEMTLTRAKF---EELTADLV-----ERTKEPVRQALKDA-----GLSASDIDEVILVGGSTRIPAVQELVKDFFGK--- 350 (595)
T ss_pred EEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHc-----CCCHhHCcEEEEECCcccChHHHHHHHHHhCC---
Confidence 3456666555 33444421 23555566666421 22233468899999999999999998775431
Q ss_pred CCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 545 CGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 545 ~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
.+..+.+|..++..||++.|..
T Consensus 351 -----~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 351 -----EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred -----cccCCcCcHHHHHHHHHHHHHH
Confidence 2334557888999999998864
No 41
>CHL00094 dnaK heat shock protein 70
Probab=86.68 E-value=0.86 Score=52.96 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=58.2
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcc---cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEP---VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~---l~~a 73 (601)
-+++|-|.. ..|..+.+.. + .+.+.+.+..+.++.|.......+-||+|+|.|+|.|.=+--|.. +...
T Consensus 137 ~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 137 QAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 367788887 6677666555 2 445566666665555521111356899999999998866544321 1222
Q ss_pred ceeecccchHhHHHHHHHHhc
Q 007501 74 SCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~ 94 (601)
..-.++||.+++..|...+..
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred ecCCCcChHHHHHHHHHHHHH
Confidence 344689999999988877654
No 42
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.45 E-value=0.36 Score=56.07 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=54.3
Q ss_pred eEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCC
Q 007501 465 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 544 (601)
Q Consensus 465 ~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p 544 (601)
..+.|..+.| |-++.|-+ ..+.+.|..++... .+...-...|+|+||+|.+|++.++|..-+.
T Consensus 289 ~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~l~~a-----~~~~~~id~ViLvGGssriP~v~~~l~~~fg---- 351 (627)
T PRK00290 289 LEIKLTRAKF---EELTEDLV-----ERTIEPCKQALKDA-----GLSVSDIDEVILVGGSTRMPAVQELVKEFFG---- 351 (627)
T ss_pred EEEEECHHHH---HHHHHHHH-----HHHHHHHHHHHHHc-----CCChhhCcEEEEECCcCCChHHHHHHHHHhC----
Confidence 3455665555 33444421 12445556666422 1222335789999999999999999977652
Q ss_pred CCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 545 CGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 545 ~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
. .+....+|..++..||++.|..
T Consensus 352 ~----~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 352 K----EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred C----CCCcCcCChHHHHHhHHHHHHH
Confidence 1 1233457888999999998863
No 43
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=86.44 E-value=1.7 Score=50.32 Aligned_cols=92 Identities=9% Similarity=-0.090 Sum_probs=58.9
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee--eCCcc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV--~eG~~-l~~a 73 (601)
.+++|=|+. ..|+.+.+.. + -+.+.+.+..+.++.|.......+-||+|+|.++|.|.=+ .+|.. +...
T Consensus 131 ~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~ 210 (599)
T TIGR01991 131 GAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLAT 210 (599)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEE
Confidence 478888887 7788777766 2 3445555555544443111113568999999999987543 24422 1122
Q ss_pred ceeecccchHhHHHHHHHHhccC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKH 96 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~ 96 (601)
..-..+||.+++..|...|..++
T Consensus 211 ~gd~~lGG~d~D~~l~~~l~~~~ 233 (599)
T TIGR01991 211 GGDSALGGDDFDHALAKWILKQL 233 (599)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 23358999999999999886553
No 44
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.00 E-value=1.8 Score=50.42 Aligned_cols=92 Identities=8% Similarity=-0.108 Sum_probs=59.3
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeee--CCcc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~--eG~~-l~~a 73 (601)
.+++|=|+. ..|..+.+.. + -+.+.+.+..+.++.|.......+-+|+|+|.|++.|.-+- .|.. +...
T Consensus 151 ~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 151 GAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 468888887 6777776666 2 44556666555544441111134678999999999875543 3422 1222
Q ss_pred ceeecccchHhHHHHHHHHhccC
Q 007501 74 SCRTNIGGYHITDYLKQLLSLKH 96 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k~ 96 (601)
..-..+||.+++..|...+..++
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~~~ 253 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILEQA 253 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHc
Confidence 33357999999999998886653
No 45
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=85.90 E-value=0.96 Score=52.56 Aligned_cols=90 Identities=11% Similarity=-0.068 Sum_probs=56.6
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeC--Ccc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVE--GEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~e--G~~-l~~a 73 (601)
.+++|=|+. ..|..+.+.. + -+.+.+.+..+.++.|.......+-||+|+|.++|.|.-+-- |.. +...
T Consensus 135 ~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 135 EAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 368888887 7777776665 2 334555555544444411111467999999999998755433 321 2222
Q ss_pred ceeecccchHhHHHHHHHHhc
Q 007501 74 SCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~ 94 (601)
..-.++||.+++..|..++..
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred cCCCCcChHHHHHHHHHHHHH
Confidence 334689999999988877654
No 46
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=85.07 E-value=1.1 Score=51.53 Aligned_cols=90 Identities=11% Similarity=-0.052 Sum_probs=55.9
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCC-CCCcccceeecCCCceeEEee--eCCcc-ccc
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPF--VEGEP-VYR 72 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~-~~~ttGLVVD~G~~~T~VvPV--~eG~~-l~~ 72 (601)
.+++|=|+. ..|..+.+.. + -+.+.+.+..+.++.|... ....+-||+|+|.++|.|.-+ .+|.. +..
T Consensus 132 ~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 132 EAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 478888887 7777777655 2 3344455544444443110 114678999999999977544 23322 222
Q ss_pred CceeecccchHhHHHHHHHHhc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~ 94 (601)
...-.++||.+++..|..+|..
T Consensus 212 ~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 212 TAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred ecCCcccCchhHHHHHHHHHHH
Confidence 2233579999999988877653
No 47
>PLN03184 chloroplast Hsp70; Provisional
Probab=84.35 E-value=1.2 Score=52.34 Aligned_cols=91 Identities=13% Similarity=-0.032 Sum_probs=58.1
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeC--Ccc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVE--GEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~e--G~~-l~~a 73 (601)
.++||=|+. ..|..+.+.. + .+.+.+.+..+.+++|.......+-||+|+|.++|.|.-+-- |.. +...
T Consensus 174 ~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 174 KAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 578888887 6777766655 2 445556665555554421111357899999999998755432 321 1222
Q ss_pred ceeecccchHhHHHHHHHHhcc
Q 007501 74 SCRTNIGGYHITDYLKQLLSLK 95 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~k 95 (601)
..-.++||.+++..|..++..+
T Consensus 254 ~gd~~LGG~dfD~~L~~~~~~~ 275 (673)
T PLN03184 254 SGDTHLGGDDFDKRIVDWLASN 275 (673)
T ss_pred cCCCccCHHHHHHHHHHHHHHH
Confidence 2346899999999998877543
No 48
>PRK13410 molecular chaperone DnaK; Provisional
Probab=84.17 E-value=1.4 Score=51.75 Aligned_cols=90 Identities=12% Similarity=-0.045 Sum_probs=56.2
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeee--CCcc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~--eG~~-l~~a 73 (601)
.++||=|+. ..|+.+.+.. + .+.+.+.+..+.++.|.......+-||+|+|.+++.|.=+- +|.. +...
T Consensus 137 ~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at 216 (668)
T PRK13410 137 GAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKAT 216 (668)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 478888887 6777666555 2 34455555555444442111135789999999999875443 4422 2222
Q ss_pred ceeecccchHhHHHHHHHHhc
Q 007501 74 SCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~ 94 (601)
..-.++||.+++..|...|..
T Consensus 217 ~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 217 SGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred ecCCCCChhHHHHHHHHHHHH
Confidence 233579999999988776654
No 49
>PRK13411 molecular chaperone DnaK; Provisional
Probab=83.86 E-value=0.58 Score=54.71 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=54.8
Q ss_pred eEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCC
Q 007501 465 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 544 (601)
Q Consensus 465 ~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p 544 (601)
..+.|..+.| |-|+.|-+ ..+.+.|..++.. ..+...-...|+|+||+|.+|++.+.|..-+..
T Consensus 290 ~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~L~~-----a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~--- 353 (653)
T PRK13411 290 LEMELTRAKF---EELTKDLV-----EATIEPMQQALKD-----AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG--- 353 (653)
T ss_pred EEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHH-----cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCC---
Confidence 3556666555 34555421 2245566666652 233344467899999999999999999766431
Q ss_pred CCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 545 CGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 545 ~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
..+..+.+|..++=.||++.|..
T Consensus 354 ----~~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 354 ----KQPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred ----cCcCCCCCchHHHHHHHHHHHHh
Confidence 12223446777788899988753
No 50
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=83.52 E-value=0.72 Score=50.60 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=43.2
Q ss_pred hhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhh
Q 007501 515 LTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 515 L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
+-..|+++||.+.-+||...|.+.|..-.+ ..+|+.|++|++..=+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 456899999999999999999998865332 2467778999999999999875
No 51
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=83.19 E-value=0.75 Score=53.91 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=54.1
Q ss_pred eEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCC
Q 007501 465 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 544 (601)
Q Consensus 465 ~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p 544 (601)
..+.|..+.| |-++.|-+ ..+.+.|..++... .+.+.-...|+|+||+|.+|++.+.|..-+..
T Consensus 330 ~~~~itR~ef---e~l~~~l~-----~~~~~~i~~~L~~a-----~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~--- 393 (663)
T PTZ00400 330 LQIKLSRAKL---EELTHDLL-----KKTIEPCEKCIKDA-----GVKKDELNDVILVGGMTRMPKVSETVKKIFGK--- 393 (663)
T ss_pred EEEEECHHHH---HHHHHHHH-----HHHHHHHHHHHHHc-----CCCHHHCcEEEEECCccCChHHHHHHHHHhCC---
Confidence 3456665555 33444421 22455566666532 22333468899999999999999999776532
Q ss_pred CCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 545 CGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 545 ~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
.+....+|..++=.||++.|..
T Consensus 394 -----~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 394 -----EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred -----CcccCCCCccceeeccHHHHHh
Confidence 1223456778888899998754
No 52
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=83.05 E-value=0.59 Score=54.73 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=37.8
Q ss_pred hhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 514 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 514 ~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
.-...|+|+||+|.+|++.+.|..-+.. -| ....+|..++=+||+++|..
T Consensus 352 ~dId~VvLVGGssriP~V~~~l~~~fg~-~~-------~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 352 KEINDVVLVGGMTRMPKVVEEVKKFFQK-DP-------FRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred hhCCEEEEECCcccChHHHHHHHHHhCC-Cc-------cccCCCchHHHHhHHHHHHH
Confidence 4457899999999999999999876532 11 12346778888899998863
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=82.75 E-value=0.64 Score=51.09 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhc
Q 007501 491 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 491 ~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
.||+..|..-+.. -.--+..+-..|+++||.+..+|+...|.+.|. .+|+.|++|.+..=+||+++|+
T Consensus 335 AGl~~SIa~rv~~----~l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 335 AAACHSVAEQVYE----QQLQEIDVREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHH----HHhhcCCCCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 4666666655420 001122334559999999999999999988873 4677789999999999999985
No 54
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=82.64 E-value=0.76 Score=47.84 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=40.7
Q ss_pred cCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhh
Q 007501 517 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 517 ~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
.+|+++||.+.-+||...|+++|... ...+.|..+++|++..=+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998532 134556667889999889999875
No 55
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=82.09 E-value=0.7 Score=53.46 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=55.9
Q ss_pred CeEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhC
Q 007501 464 DFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR 543 (601)
Q Consensus 464 ~~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~ 543 (601)
+..+.|..+.| |-++.|-+ ..+.+.|..++.. ..+...-...|+|+||+|.+|++.+.|.+-+..
T Consensus 274 ~~~~~itr~ef---e~l~~~ll-----~~i~~~i~~~L~~-----a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~-- 338 (599)
T TIGR01991 274 DFKGKLTRDEF---EALIQPLV-----QKTLSICRRALRD-----AGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-- 338 (599)
T ss_pred EEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHH-----cCCChhhCCEEEEECCcCCChHHHHHHHHHhCC--
Confidence 35666666665 34455521 1244555566642 122233457899999999999999999876532
Q ss_pred CCCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 544 PCGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 544 p~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
.+....+|..++=.||++.|..
T Consensus 339 ------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 339 ------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred ------CCCCCCCCcHHHHHHHHHHHHH
Confidence 1223457788888999998864
No 56
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=81.68 E-value=1.6 Score=49.98 Aligned_cols=90 Identities=12% Similarity=-0.009 Sum_probs=56.2
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccC-CCCCCcccceeecCCCceeEEee--eCCccc-cc
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQ-YGICNKDGLAICPGFSTTHVIPF--VEGEPV-YR 72 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~-~~~~~ttGLVVD~G~~~T~VvPV--~eG~~l-~~ 72 (601)
.+++|=|.. ..|+.|.+.+ + .+.+...+..+.++.+. ......+-||+|+|++++.|.=| .+|..- ..
T Consensus 137 ~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 137 DVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred cceeeechhhhhhhhhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 478888887 7787787777 2 33344444444333321 00114688999999999865543 455332 22
Q ss_pred CceeecccchHhHHHHHHHHhc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~ 94 (601)
.....++||.+++..|..+|..
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccceecceeeccccc
Confidence 3344689999999999888754
No 57
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.65 E-value=4.7 Score=43.23 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=54.7
Q ss_pred cceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHH
Q 007501 49 GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQ 127 (601)
Q Consensus 49 GLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~ 127 (601)
.+|+|+|+..|.+.=+++|.++. .+-+++||+++|.-+++..+ ++.+.+.+||..... +.||..+.-
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~~~-P~~y~~~vl 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGGTL-PTDYGSEVL 261 (354)
T ss_pred heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCCCC-CCchhHHHH
Confidence 45999999999999999998876 46689999999999888764 466778888887653 568887754
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.64 E-value=11 Score=44.42 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=25.4
Q ss_pred hhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCC
Q 007501 399 EDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVP 441 (601)
Q Consensus 399 ~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~ 441 (601)
..|.+|-.-.+.. -.-+++-.+.++.+|..+|+.+.-.-+.
T Consensus 429 qe~iv~~nak~~q--l~~eletLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 429 QEWIVYLNAKKKQ--LQQELETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhheeccch
Confidence 4899983322211 2245566677888888888877766553
No 59
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=80.16 E-value=2.8 Score=44.84 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=43.3
Q ss_pred ccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhc
Q 007501 48 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEH 115 (601)
Q Consensus 48 tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~ 115 (601)
+-+|||+|+..|+++=+.+|.++. ++-+++||.++|+-+.+.+. ++...++.+|...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~ 237 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG---------IDFEEAEELKRSG 237 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT
T ss_pred eEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcC
Confidence 458999999999999999998774 66789999999999987763 5667778887764
No 60
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=79.38 E-value=0.7 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred cC-cEEecCCCCCCChHHHHHHHHH
Q 007501 517 SS-ILMTGGCCLFPGMSERLEAGIR 540 (601)
Q Consensus 517 ~N-IvLtGG~S~~pGf~eRL~~EL~ 540 (601)
.+ ||||||+|.+||+.+.+.+.+.
T Consensus 315 ~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 315 NGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred CCEEEEeChHHcccCHHHHHHHHhC
Confidence 44 9999999999999999998875
No 61
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=79.06 E-value=3 Score=48.92 Aligned_cols=90 Identities=9% Similarity=-0.116 Sum_probs=55.3
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee--eCCcc-cccC
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEP-VYRG 73 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV--~eG~~-l~~a 73 (601)
-+++|=|+. ..|.-+.+.. + -+.+.+.+..+..++|.......+-+|+|+|.|++.|.=+ .+|.. +...
T Consensus 162 ~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 162 NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 467888887 6676666544 2 3345555555554444211113578999999999976543 35633 2222
Q ss_pred ceeecccchHhHHHHHHHHhc
Q 007501 74 SCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 74 ~~rl~iGG~~lt~yL~kLL~~ 94 (601)
..-..+||.+++..|...+..
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred cCCCCCCchhHHHHHHHHHHH
Confidence 334589999998777666543
No 62
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=78.91 E-value=0.93 Score=52.68 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.7
Q ss_pred hcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 516 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 516 ~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
...|+|+||+|.+|++.+.|..-+.. .+....+|..++=.||++.|..
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHHH
Confidence 57899999999999999999776532 1123457778888899988763
No 63
>PTZ00121 MAEBL; Provisional
Probab=78.29 E-value=1.1e+02 Score=39.04 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 007501 168 KERQGQRLREMAEAKRSSRINE 189 (601)
Q Consensus 168 r~~~~~rl~e~~~~~r~ekl~~ 189 (601)
|++-..|+.|.++++++.+.++
T Consensus 1134 Rrae~~Rr~EeaRKrEeaRraE 1155 (2084)
T PTZ00121 1134 RKAEDARKAEEARKAEDAKRVE 1155 (2084)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666777666666544
No 64
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=77.90 E-value=1.2 Score=51.57 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=53.2
Q ss_pred EEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCC
Q 007501 466 QIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC 545 (601)
Q Consensus 466 ~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~ 545 (601)
.+.|..+.| |-++.|-+ ..+...|..++... . ..=...|+|+||+|.+|++.+.|..-+.
T Consensus 274 ~~~itr~ef---e~l~~~l~-----~~~~~~i~~~L~~a---~----~~~Id~ViLvGGssriP~v~~~l~~~f~----- 333 (595)
T PRK01433 274 NISINKQTL---EQLILPLV-----ERTINIAQECLEQA---G----NPNIDGVILVGGATRIPLIKDELYKAFK----- 333 (595)
T ss_pred eEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHhhc---C----cccCcEEEEECCcccChhHHHHHHHHhC-----
Confidence 556666555 33444421 12445556666532 1 1225889999999999999999886652
Q ss_pred CCCeeEeeCCCCcccceehhhhhhcc
Q 007501 546 GAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 546 ~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
..+..+.+|..++=.||++.|..
T Consensus 334 ---~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 334 ---VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred ---CCceecCCchHHHHHHHHHHHHH
Confidence 12334567888888999998864
No 65
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=77.74 E-value=1.1 Score=47.38 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=47.2
Q ss_pred CCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhc
Q 007501 491 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 491 ~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
.||+..|..-+- ..--|..+-..|+++||.+.-|||...|.+.|.. ++.+ .|++|.+..=+|++++|.
T Consensus 220 aGl~~sia~rv~-----~~~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~------~v~~-~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 220 AAYCQAMAERVV-----SLLERIGVEEGFFITGGIAKNPGVVKRIERILGI------KAVD-TKIDSQIAGALGAALFGY 287 (293)
T ss_pred HHHHHHHHHHHH-----HHhcccCCCCCEEEECcccccHHHHHHHHHHhCC------Ccee-CCCCccHHHHHHHHHHHH
Confidence 456655554332 1111234556899999999999999999998841 2222 366789999999999984
No 66
>PRK13410 molecular chaperone DnaK; Provisional
Probab=77.54 E-value=1.1 Score=52.58 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=43.5
Q ss_pred cchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 493 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 493 L~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
+.+.|..++.. ..+.+.-...|+|+||+|.+|.+.+.|..-+. .. +....+|..++=+||++.|..
T Consensus 311 ~~~~i~~~L~~-----ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg----~~----~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 311 LLRPVKRALKD-----AGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP----RE----PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred HHHHHHHHHHH-----cCCChhhCcEEEEECCccccHHHHHHHHHHcC----CC----cccCCCCchHHHHhHHHHHHh
Confidence 44555555542 22333445789999999999999999876532 11 223346777788899988764
No 67
>PLN03184 chloroplast Hsp70; Provisional
Probab=76.16 E-value=1.4 Score=51.69 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=36.1
Q ss_pred hcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhcc
Q 007501 516 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 571 (601)
Q Consensus 516 ~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl 571 (601)
...|+|+||+|.+|++.++|..-+.. . +....+|..++=+||++.|..
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~------~--~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGK------D--PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCC------C--cccccCcchHHHHHHHHHHHH
Confidence 48899999999999999999876531 1 122346677888899988753
No 68
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=75.87 E-value=3.9 Score=47.92 Aligned_cols=90 Identities=12% Similarity=-0.044 Sum_probs=55.7
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCC--CCCCcccceeecCCCceeEEee--eCCccc-c
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQY--GICNKDGLAICPGFSTTHVIPF--VEGEPV-Y 71 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~--~~~~ttGLVVD~G~~~T~VvPV--~eG~~l-~ 71 (601)
.++||=|+. ..|+.+.+.. + .+.+.+.+..+.++.|.. .....+-+|+|+|.+++.|.=| ..|..- .
T Consensus 142 ~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 142 DAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 478888887 6777766665 2 344555555444444311 0113578999999999987433 345322 2
Q ss_pred cCceeecccchHhHHHHHHHHhc
Q 007501 72 RGSCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 72 ~a~~rl~iGG~~lt~yL~kLL~~ 94 (601)
....-.++||.+++..|...+..
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHHH
Confidence 22233589999999988777643
No 69
>PRK13411 molecular chaperone DnaK; Provisional
Probab=75.63 E-value=3.6 Score=48.19 Aligned_cols=90 Identities=10% Similarity=-0.081 Sum_probs=56.6
Q ss_pred eEEEecCcc---cchHHHHHHH---h--hhhhhhhhhhhhccccCC-CCCCcccceeecCCCceeEEee--eCCcc-ccc
Q 007501 5 HFMFLECML---LSKINMSFLY---A--ITAFGVDAAFSYKYNQQY-GICNKDGLAICPGFSTTHVIPF--VEGEP-VYR 72 (601)
Q Consensus 5 pVLlTE~~~---~~Rekm~Eil---~--al~~~~~sllSlya~g~~-~~~~ttGLVVD~G~~~T~VvPV--~eG~~-l~~ 72 (601)
.++||=|+. ..|+.+.+.. + -+.+.+.+..+.+++|.. .....+-||+|+|.|++.|.=+ -.|.. +..
T Consensus 135 ~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 135 QAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 478898887 7787777665 2 445556655555554421 1113467999999999976532 23322 222
Q ss_pred CceeecccchHhHHHHHHHHhc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~ 94 (601)
...-..+||.+++..|..+|..
T Consensus 215 t~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 215 TAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EecCCCcCHHHHHHHHHHHHHH
Confidence 2223479999999988777754
No 70
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=75.04 E-value=2.6 Score=44.88 Aligned_cols=83 Identities=16% Similarity=-0.008 Sum_probs=51.6
Q ss_pred hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCcee-ecccchHhHHHHHHHHhccCCCCCCcc
Q 007501 25 ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCR-TNIGGYHITDYLKQLLSLKHPQHMTKL 103 (601)
Q Consensus 25 al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~r-l~iGG~~lt~yL~kLL~~k~~~~~~~~ 103 (601)
.+.+.+|++-++|..-.......+-||||+|+.+|.++-|..+....+.+.. .++|-..+.+-+.+.|...+ ...
T Consensus 142 ~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~----~~~ 217 (318)
T PF06406_consen 142 DVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAG----IDT 217 (318)
T ss_dssp EEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--S----BHH
T ss_pred eEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhc----CCC
Confidence 3445677776666542110113468999999999999998877666655554 58999999999999987621 123
Q ss_pred cHHHHHHH
Q 007501 104 TWEKVEDL 111 (601)
Q Consensus 104 ~~~~v~~I 111 (601)
+..++++|
T Consensus 218 s~~~~~~i 225 (318)
T PF06406_consen 218 SELQIDDI 225 (318)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 44555554
No 71
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=74.44 E-value=1.9 Score=50.39 Aligned_cols=85 Identities=15% Similarity=0.264 Sum_probs=51.8
Q ss_pred eEEEeCcccccc-cccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhC
Q 007501 465 FQIVLGVERFRC-PEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR 543 (601)
Q Consensus 465 ~~I~Lg~ERf~~-pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~ 543 (601)
..+.|..+.|.- .+.||. .+...|..++... . +...-...|+|+||+|.+|.+.+.|..-+...
T Consensus 295 ~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a---~--~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~- 359 (653)
T PTZ00009 295 YNVTISRARFEELCGDYFR---------NTLQPVEKVLKDA---G--MDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGK- 359 (653)
T ss_pred EEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHc---C--CCHHHCcEEEEECCCCCChhHHHHHHHHhCCC-
Confidence 556676666532 233332 2344555666421 2 22233578999999999999999987654321
Q ss_pred CCCCCeeEeeCCCCcccceehhhhhhc
Q 007501 544 PCGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 544 p~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
.+....+|..++=.||++.|.
T Consensus 360 ------~~~~~~npdeaVA~GAa~~aa 380 (653)
T PTZ00009 360 ------EPCKSINPDEAVAYGAAVQAA 380 (653)
T ss_pred ------CCCCCCCcchHHhhhhhhhHH
Confidence 122334677778888888765
No 72
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=71.84 E-value=1.8 Score=48.54 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=34.6
Q ss_pred CcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHH
Q 007501 46 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDY 87 (601)
Q Consensus 46 ~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~y 87 (601)
....++||+|.++|++.=+.+|.++...+ +++||+++|.-
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~l~~T~~--l~vGG~~IT~D 184 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGKVIDTAC--LNVGGRLIETD 184 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCEEEEEEE--EecccceEEEC
Confidence 46788999999999999999998776655 89999999843
No 73
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=71.58 E-value=2.6 Score=42.98 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=35.5
Q ss_pred CcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhh
Q 007501 518 SILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVY 568 (601)
Q Consensus 518 NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSil 568 (601)
.|+++||.+..|++.+.|...|. +.|..++++.+.+=+|++++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999988872 45666778877777888763
No 74
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=69.68 E-value=1.8 Score=49.44 Aligned_cols=85 Identities=26% Similarity=0.391 Sum_probs=52.8
Q ss_pred eEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCC
Q 007501 465 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 544 (601)
Q Consensus 465 ~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p 544 (601)
..+.|..+.|. -|+.|.+ ..+..+|..++..+ . ....=...|+|+||+|.+|.+.+.|..-+.
T Consensus 291 ~~~~itr~~fe---~l~~~~~-----~~~~~~i~~~l~~~---~--~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~---- 353 (602)
T PF00012_consen 291 FSITITREEFE---ELCEPLL-----ERIIEPIEKALKDA---G--LKKEDIDSVLLVGGSSRIPYVQEALKELFG---- 353 (602)
T ss_dssp EEEEEEHHHHH---HHTHHHH-----HHTHHHHHHHHHHT---T----GGGESEEEEESGGGGSHHHHHHHHHHTT----
T ss_pred cccccccceec---ccccccc-----cccccccccccccc---c--ccccccceeEEecCcccchhhhhhhhhccc----
Confidence 45666666653 2333321 13566677777532 1 122335779999999999999988866543
Q ss_pred CCCCeeEeeCCCCcccceehhhhhhc
Q 007501 545 CGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 545 ~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
-.+..+.+|..++=.||+++|.
T Consensus 354 ----~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 354 ----KKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp ----SEEB-SS-TTTHHHHHHHHHHH
T ss_pred ----cccccccccccccccccccchh
Confidence 1334455777888899999885
No 75
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=69.32 E-value=2.8 Score=42.09 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=46.1
Q ss_pred CcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhc
Q 007501 46 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEH 115 (601)
Q Consensus 46 ~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~ 115 (601)
.++|.|||+|.++|-|.=|-.|.++..|- -+.||.|+|- -+.|+. .++.+.++++|..+
T Consensus 139 l~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmtL------vlAG~y---gi~~EeAE~~Kr~~ 197 (277)
T COG4820 139 LDDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMTL------VLAGNY---GISLEEAEQYKRGH 197 (277)
T ss_pred cCCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEEE------EEeccc---CcCHhHHHHhhhcc
Confidence 67999999999999999999999998775 4789999983 333332 35667777777754
No 76
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=68.49 E-value=7.5 Score=40.38 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=33.2
Q ss_pred CcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHH
Q 007501 46 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLK 89 (601)
Q Consensus 46 ~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~ 89 (601)
..+++|||+|.|+|.++-+-+|.+.. ...+++|.-.+++-+.
T Consensus 111 ~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 111 DKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERFF 152 (285)
T ss_dssp TSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHHS
T ss_pred cCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHHh
Confidence 46899999999999999999997554 5568999998887663
No 77
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=67.92 E-value=2.9 Score=45.53 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=40.1
Q ss_pred cEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhc
Q 007501 519 ILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 519 IvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
||++||++...|+..-|...|. .+|+.||.+++..=+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999888775 6788899999999999999986
No 78
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=66.18 E-value=9.3 Score=44.24 Aligned_cols=91 Identities=12% Similarity=-0.040 Sum_probs=64.2
Q ss_pred ceEEEecCcc---cchHHHHHHH-----hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEee--eCC-ccccc
Q 007501 4 FHFMFLECML---LSKINMSFLY-----AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEG-EPVYR 72 (601)
Q Consensus 4 hpVLlTE~~~---~~Rekm~Eil-----~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV--~eG-~~l~~ 72 (601)
+-+++|=|.+ ..|..+.+.. +-+.+.+.+..+.|+.|.......+-||+|+|.|++.|-=| -+| +-+..
T Consensus 121 ~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~a 200 (579)
T COG0443 121 TDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLA 200 (579)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEee
Confidence 3478888887 6676666655 36778888888888888321124688999999999876444 444 33445
Q ss_pred CceeecccchHhHHHHHHHHhc
Q 007501 73 GSCRTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 73 a~~rl~iGG~~lt~yL~kLL~~ 94 (601)
......+||.+.+..|...+-.
T Consensus 201 t~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 201 TGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred cCCCcccCchhHHHHHHHHHHH
Confidence 5666789999998877665543
No 79
>PRK13317 pantothenate kinase; Provisional
Probab=60.01 E-value=8.5 Score=40.38 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCcchhHHHHhhcCCCCChhhHHhhhcCcEEec-CCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhh
Q 007501 491 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTG-GCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 491 ~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtG-G~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
.||..+|.+.|..+ .+- -.|..-..+|+++| |.+..|++.+.|.+.++. ..++++.|+++.|..=+||++++
T Consensus 200 asl~~~v~~~I~~l-A~~-~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a 272 (277)
T PRK13317 200 AGVIGLVGEVITTL-SIQ-AAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLA 272 (277)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHh
Confidence 46777776666321 000 12333448999999 799999999999877652 23577778899999999999887
Q ss_pred c
Q 007501 570 T 570 (601)
Q Consensus 570 s 570 (601)
.
T Consensus 273 ~ 273 (277)
T PRK13317 273 T 273 (277)
T ss_pred h
Confidence 4
No 80
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=59.80 E-value=5.1 Score=42.85 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.7
Q ss_pred hhcCcEEecCCCCCCChHHHHHHHHH
Q 007501 515 LTSSILMTGGCCLFPGMSERLEAGIR 540 (601)
Q Consensus 515 L~~NIvLtGG~S~~pGf~eRL~~EL~ 540 (601)
=.+.|+||||++.+|||.+-|..+|.
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred CCCEEEEECCccchhhHHHHHHHHHC
Confidence 46779999999999999999999986
No 81
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=58.08 E-value=23 Score=32.04 Aligned_cols=60 Identities=28% Similarity=0.307 Sum_probs=41.2
Q ss_pred ceeecCCCceeEEeeeCCcccccCceeeccc--------chHhH--HHHHHHHhccCCCCCCcccHHHHHHH-Hhhcccc
Q 007501 50 LAICPGFSTTHVIPFVEGEPVYRGSCRTNIG--------GYHIT--DYLKQLLSLKHPQHMTKLTWEKVEDL-KMEHCYI 118 (601)
Q Consensus 50 LVVD~G~~~T~VvPV~eG~~l~~a~~rl~iG--------G~~lt--~yL~kLL~~k~~~~~~~~~~~~v~~I-Ke~~CyV 118 (601)
++||+|.+.|.++=...|..-. +.-+++| |.++| +-+.+-|+ .....++.+ |.+++.|
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~---------~a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIK---------IAIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHH---------HHHHHHHHHhCCeeeEE
Confidence 6899999999999888875443 7778999 99999 88888775 345678888 7777665
Q ss_pred cc
Q 007501 119 AP 120 (601)
Q Consensus 119 a~ 120 (601)
..
T Consensus 71 ~v 72 (120)
T PF14450_consen 71 YV 72 (120)
T ss_dssp --
T ss_pred Ee
Confidence 54
No 82
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.90 E-value=2.5e+02 Score=29.64 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 007501 294 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEK-IDQRKRLKT 349 (601)
Q Consensus 294 r~~~k~~k~~e~~~~~~~~~~~e~~r~~~~~~w~~~~r~~~~~i~~~-~~~R~~~~~ 349 (601)
+.+.|+++.+......+|+..-+..+...-..|...++.-+..-..+ ++.|++.+.
T Consensus 97 ~ekik~k~~k~~e~e~~E~~~~~k~~~ks~~~~~~a~~r~q~~e~~~~~qkRrreK~ 153 (290)
T KOG2689|consen 97 LEKIKQKQIKREELELREALEREKQRRKSGDEMSAAKRRLQDDEMRRAAQKRRREKA 153 (290)
T ss_pred HHHhcchhHHHHHHHHHHhhhhHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666666666777888888888888888999988777766666 666666663
No 83
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=57.60 E-value=5.9 Score=44.03 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=37.3
Q ss_pred HhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEee----CCCCcccceehhhhhhcc
Q 007501 513 QRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVR----ALDPVLDAWRGASVYATK 571 (601)
Q Consensus 513 ~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~----~~d~~~~aW~GgSilasl 571 (601)
..+-+.||||||++++||+.+=...=+..-+--..+..+.- ..+|.|++=+|.-.++..
T Consensus 318 ~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 318 NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 56778999999999999998654433321110011112211 346889999998887764
No 84
>PRK11678 putative chaperone; Provisional
Probab=57.25 E-value=5 Score=45.00 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=33.6
Q ss_pred cCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhc
Q 007501 517 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 517 ~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
..|+||||+|.+|++.+.|...+ |. ..|. ..++-.++=.|.+++|.
T Consensus 401 d~VvLvGGsSriP~V~~~l~~~f----g~---~~v~-~g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 401 DVIYLTGGSARSPLIRAALAQQL----PG---IPIV-GGDDFGSVTAGLARWAQ 446 (450)
T ss_pred CEEEEcCcccchHHHHHHHHHHC----CC---CcEE-eCCCcchHHHHHHHHHH
Confidence 57999999999999999887654 32 1222 23566777788888874
No 85
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=57.11 E-value=6.7 Score=33.45 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCCC
Q 007501 418 MDENEAELARISARLQEVDPTFVPK 442 (601)
Q Consensus 418 ~e~~~~~L~~le~~L~~~dp~F~~~ 442 (601)
+|.|+..|.+||.+|..-||.|...
T Consensus 4 Se~E~r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4678899999999999999999764
No 86
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=55.36 E-value=4.5e+02 Score=31.95 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHH
Q 007501 290 TTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKE 336 (601)
Q Consensus 290 ~~~~r~~~k~~k~~e~~~~~~~~~~~e~~r~~~~~~w~~~~r~~~~~ 336 (601)
.|+++.+++++........+...+.-=-....|-..|.+.+...++.
T Consensus 722 ~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs 768 (988)
T KOG2072|consen 722 LYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGERQS 768 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHH
Confidence 45555555554433333222222221122234445555555444443
No 87
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=55.00 E-value=6.6 Score=40.89 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.6
Q ss_pred cccceeecCCCceeEEeeeCCc
Q 007501 47 KDGLAICPGFSTTHVIPFVEGE 68 (601)
Q Consensus 47 ttGLVVD~G~~~T~VvPV~eG~ 68 (601)
.+++.||.|..+|.||||.+|.
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CceEEEecCCcccceEeecchh
Confidence 4799999999999999999996
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.80 E-value=4.6e+02 Score=31.39 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=9.5
Q ss_pred cHHHHHHHHHhhhhhh
Q 007501 370 NAAQRERMRLLTTAAF 385 (601)
Q Consensus 370 s~a~~~rm~~~~~l~~ 385 (601)
|++....+-+++.|+.
T Consensus 611 saEtriKldLfsaLg~ 626 (697)
T PF09726_consen 611 SAETRIKLDLFSALGD 626 (697)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555566777764
No 89
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=53.00 E-value=9.9 Score=40.01 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.1
Q ss_pred CcccceeecCCCceeEEeeeCCccc
Q 007501 46 NKDGLAICPGFSTTHVIPFVEGEPV 70 (601)
Q Consensus 46 ~ttGLVVD~G~~~T~VvPV~eG~~l 70 (601)
..++||||+|..+|.|.||.+|.+.
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred CCCEEEEeCCCCEEEEEEEECCeee
Confidence 5789999999999999999999874
No 90
>PRK11678 putative chaperone; Provisional
Probab=52.28 E-value=27 Score=39.18 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeee--CC---------cccccCceeecccchHhHHHHH
Q 007501 25 ITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EG---------EPVYRGSCRTNIGGYHITDYLK 89 (601)
Q Consensus 25 al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~--eG---------~~l~~a~~rl~iGG~~lt~yL~ 89 (601)
.+.+.+.+..+.++.|.......+-||+|+|.++|.+.=|- .+ .++.++- ..+||.+++..|.
T Consensus 187 ~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 187 DVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred EEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 55666666666666552111245789999999998664432 11 1233332 3699999999885
No 91
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.33 E-value=3.9e+02 Score=30.25 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=29.4
Q ss_pred HHHHHH-HHHhhhhccChH---HHHHHHHHHH----HHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHH
Q 007501 275 LEQLKE-KRRQIFLKTTTE---GRQRAKQKRV----EEELEQEKKNQEEEERRLENPELYVEQMRAKYKEL 337 (601)
Q Consensus 275 ~~~~ke-Kr~q~llk~~~~---~r~~~k~~k~----~e~~~~~~~~~~~e~~r~~~~~~w~~~~r~~~~~i 337 (601)
+|++.. +|+..+.++-.+ .|-+|+++.+ +.|+-+..-.+..-..-..+-+.||+.++.-...|
T Consensus 197 eE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~hi 267 (630)
T KOG0742|consen 197 EEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHI 267 (630)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHh
Confidence 344433 333344454444 4556666554 22333222222222222344567888876655543
No 92
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=49.57 E-value=3 Score=42.93 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=35.3
Q ss_pred cEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhh
Q 007501 519 ILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 519 IvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
|+|+||...-+.+...|...|....+.. .+..+..|.+.+..||.+||
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999998887777777766666655543 33344568999999999986
No 93
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=49.00 E-value=11 Score=40.12 Aligned_cols=25 Identities=12% Similarity=0.407 Sum_probs=23.2
Q ss_pred hcCcEEecCCCCCCChHHHHHHHHH
Q 007501 516 TSSILMTGGCCLFPGMSERLEAGIR 540 (601)
Q Consensus 516 ~~NIvLtGG~S~~pGf~eRL~~EL~ 540 (601)
.+.|+||||++.++||.+-|+.++.
T Consensus 283 i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 283 LDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred cceEEEECccccchhHHHHHHHHHC
Confidence 5779999999999999999999886
No 94
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=45.53 E-value=5e+02 Score=30.82 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=11.8
Q ss_pred ecccchHhHHHHHHHHhccCCCC
Q 007501 77 TNIGGYHITDYLKQLLSLKHPQH 99 (601)
Q Consensus 77 l~iGG~~lt~yL~kLL~~k~~~~ 99 (601)
+-+.|...--.|...+.-+-|.+
T Consensus 157 ~~~~~~s~~vVl~~~~~~rdp~~ 179 (811)
T KOG4364|consen 157 LKIMPSSVRVVLKLRRTCRDPIH 179 (811)
T ss_pred cccCCCcchhHHhhhhcccchhh
Confidence 34455555555555555555443
No 95
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.17 E-value=4e+02 Score=28.25 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=9.0
Q ss_pred eecccchHhHHHHHHHHhc
Q 007501 76 RTNIGGYHITDYLKQLLSL 94 (601)
Q Consensus 76 rl~iGG~~lt~yL~kLL~~ 94 (601)
-..+||.-.-+-..+.+..
T Consensus 214 gfg~g~dlffeayvqfmey 232 (445)
T KOG2891|consen 214 GFGFGGDLFFEAYVQFMEY 232 (445)
T ss_pred ccccCcchhHHHHHHHHHH
Confidence 3466776544433333333
No 96
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=41.64 E-value=43 Score=35.24 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=33.2
Q ss_pred ccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHHH
Q 007501 48 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLK 89 (601)
Q Consensus 48 tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL~ 89 (601)
+++|||+|.++|.++-+-+|.++ ....+++|.-.+++.+.
T Consensus 126 ~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 126 DGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQFF 165 (300)
T ss_pred CcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhhC
Confidence 47999999999999988888654 55679999999987653
No 97
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=40.09 E-value=30 Score=39.33 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.2
Q ss_pred ccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHH
Q 007501 48 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYL 88 (601)
Q Consensus 48 tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL 88 (601)
+++|||+|.|+|.++-+-+|.+. ....+++|.-.+++-+
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCVTWLERY 171 (496)
T ss_pred CEEEEEecCCeeeEEEecCCcee--eeeEEeccchHHHHHh
Confidence 58999999999999988888754 4557899998877644
No 98
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=38.96 E-value=40 Score=29.94 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 007501 156 PSEEEIARKAAIKERQGQRLREM 178 (601)
Q Consensus 156 ~t~eel~~~~err~~~~~rl~e~ 178 (601)
.|+|++.+|.+|=+.+.+||+|.
T Consensus 73 VT~eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999885
No 99
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.08 E-value=4.6e+02 Score=28.19 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=12.4
Q ss_pred hcCCCCHHHHHHHHHHHH
Q 007501 218 DTGYVSRQEIESTLVKLT 235 (601)
Q Consensus 218 ~~g~~~~~~l~~~i~~l~ 235 (601)
+..|.|..+.+.|+...+
T Consensus 86 e~dF~~l~~yNdYLE~vE 103 (309)
T TIGR00570 86 EEDFPSLREYNDYLEEVE 103 (309)
T ss_pred hhccCCHHHHHHHHHHHH
Confidence 345777777777777665
No 100
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=35.65 E-value=24 Score=37.91 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.1
Q ss_pred CcccceeecCCCceeEEeeeCCccccc
Q 007501 46 NKDGLAICPGFSTTHVIPFVEGEPVYR 72 (601)
Q Consensus 46 ~ttGLVVD~G~~~T~VvPV~eG~~l~~ 72 (601)
..++|++|+|..+|.|+||.+|.+...
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 568999999999999999999987654
No 101
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=35.32 E-value=32 Score=34.87 Aligned_cols=42 Identities=24% Similarity=0.506 Sum_probs=30.8
Q ss_pred hcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehh
Q 007501 516 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGA 565 (601)
Q Consensus 516 ~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~Gg 565 (601)
...++|+||.+++||+.+-++++|. .+|+.|..|.|..=+|-
T Consensus 227 i~dl~lvGGac~~~g~e~~Fe~~l~--------l~v~~P~~p~y~TPLgI 268 (277)
T COG4820 227 ITDLWLVGGACMQPGVEELFEKQLA--------LQVHLPQHPLYMTPLGI 268 (277)
T ss_pred CcceEEecccccCccHHHHHHHHhc--------cccccCCCcceechhhh
Confidence 4679999999999999999998883 34555555555554443
No 102
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=33.82 E-value=6.6e+02 Score=31.52 Aligned_cols=7 Identities=14% Similarity=0.633 Sum_probs=3.8
Q ss_pred eEEEecC
Q 007501 5 HFMFLEC 11 (601)
Q Consensus 5 pVLlTE~ 11 (601)
..|++|-
T Consensus 89 lyIVMEY 95 (1021)
T PTZ00266 89 LYILMEF 95 (1021)
T ss_pred EEEEEeC
Confidence 4466664
No 103
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=33.02 E-value=7.9e+02 Score=29.30 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=3.9
Q ss_pred chhhHHH
Q 007501 398 DEDWQLY 404 (601)
Q Consensus 398 d~dw~~y 404 (601)
|++|.-.
T Consensus 524 DeEWEEE 530 (811)
T KOG4364|consen 524 DEEWEEE 530 (811)
T ss_pred ccccccc
Confidence 4466654
No 104
>PRK10854 exopolyphosphatase; Provisional
Probab=32.49 E-value=33 Score=39.15 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=32.0
Q ss_pred cccceeecCCCceeEEeeeCCcccccCceeecccchHhHHH
Q 007501 47 KDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDY 87 (601)
Q Consensus 47 ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~y 87 (601)
.+++|||+|.|+|.++-+-+|.+.. +..+++|.-.+++-
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~ 175 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQL 175 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHhh
Confidence 4699999999999999998886544 44559999998873
No 105
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=30.99 E-value=23 Score=38.23 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=31.2
Q ss_pred hcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhhc
Q 007501 516 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 570 (601)
Q Consensus 516 ~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilas 570 (601)
+.+|+|+||++.+ ++.-|+..+|. + ..+++|.++.=.|...++.
T Consensus 292 ~d~IiL~GGGA~l------l~~~lk~~f~~---~--~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANI------FFDSLSHWYSD---V--EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHH------HHHHHHHHcCC---e--EEcCChHHHHHHHHHHHHH
Confidence 5789999999976 34445555662 3 4567888887777777664
No 106
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=30.96 E-value=32 Score=39.20 Aligned_cols=54 Identities=19% Similarity=0.004 Sum_probs=37.4
Q ss_pred hhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCcccccCceeecccchHhHHHH
Q 007501 27 AFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYL 88 (601)
Q Consensus 27 ~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~lt~yL 88 (601)
+++..+|.+.+.- ...+||+|+|.|+|-++=+-+..+ .....+++|.-.+|+.+
T Consensus 115 rl~~lGv~~~~~~------~~~~lv~DIGGGStEl~~g~~~~~--~~~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 115 RLIYLGVASTLPR------KGDGLVIDIGGGSTELVLGDNFEI--GLLISLPLGCVRLTERF 168 (492)
T ss_pred HHHHHHHHhcCCC------CCCEEEEEecCCeEEEEEecCCcc--ceeEEeecceEEeehhh
Confidence 3444455555542 247999999999999998875543 34556788887777554
No 107
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=28.85 E-value=30 Score=39.06 Aligned_cols=51 Identities=24% Similarity=0.151 Sum_probs=39.4
Q ss_pred hhhhhccccCC---CCCCcccceeecCCCceeEEeeeCCcccccCceeecccchHh
Q 007501 32 AAFSYKYNQQY---GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHI 84 (601)
Q Consensus 32 sllSlya~g~~---~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~iGG~~l 84 (601)
+++|-+++|-. .....+-+=||+|.|+|.+.=+-+|.++-.+| +|+||+.+
T Consensus 125 siiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi 178 (473)
T PF06277_consen 125 SIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLI 178 (473)
T ss_pred HHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEE
Confidence 67777777721 11234556689999999999999999998888 89999854
No 108
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=26.34 E-value=15 Score=37.54 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=45.2
Q ss_pred hhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCC-CCcccceehhhhhhccCCCCCccccHH----HH
Q 007501 510 DLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL-DPVLDAWRGASVYATKLQFPQQTFSRM----DY 584 (601)
Q Consensus 510 d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~-d~~~~aW~GgSilasl~~f~~~wITk~----EY 584 (601)
|+-+.--+.||++|.+|. ||..-. ++....| +.+|.|+... .|.-.+|+||.+|+.+---+...+--+ -|
T Consensus 70 DldkyAesDvviVGAGSa--GLsAAY--~I~~~rP-dlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGSA--GLSAAY--VIAKNRP-DLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPY 144 (328)
T ss_pred HHHhhhccceEEECCCcc--ccceee--eeeccCC-CceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCc
Confidence 444455678999987762 443321 2222333 4566666433 577889999999987633222211112 27
Q ss_pred hhhchHHHHHh
Q 007501 585 YEKGENWLRRY 595 (601)
Q Consensus 585 eE~G~~iv~rk 595 (601)
++.|.-++-+|
T Consensus 145 edegdYVVVKH 155 (328)
T KOG2960|consen 145 EDEGDYVVVKH 155 (328)
T ss_pred ccCCCEEEEee
Confidence 77775544443
No 109
>PTZ00121 MAEBL; Provisional
Probab=25.93 E-value=1.6e+03 Score=29.52 Aligned_cols=13 Identities=0% Similarity=-0.225 Sum_probs=6.8
Q ss_pred CcccceeecCCCc
Q 007501 46 NKDGLAICPGFST 58 (601)
Q Consensus 46 ~ttGLVVD~G~~~ 58 (601)
.+||||=+.-+..
T Consensus 997 KPTCvI~k~N~fs 1009 (2084)
T PTZ00121 997 KPTCVIDKENHFS 1009 (2084)
T ss_pred CccceecCcchhh
Confidence 4566655555443
No 110
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.60 E-value=1.5e+03 Score=28.89 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=8.3
Q ss_pred CCChHHHHHHHHHhhC
Q 007501 528 FPGMSERLEAGIRMIR 543 (601)
Q Consensus 528 ~pGf~eRL~~EL~~l~ 543 (601)
+..+..||..++....
T Consensus 1008 I~~~s~~l~~~v~~~~ 1023 (1201)
T PF12128_consen 1008 IKSQSRRLSREVSEDL 1023 (1201)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3445555555555443
No 111
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=25.37 E-value=3.2e+02 Score=34.11 Aligned_cols=9 Identities=44% Similarity=0.386 Sum_probs=3.7
Q ss_pred HHHHhccCC
Q 007501 89 KQLLSLKHP 97 (601)
Q Consensus 89 ~kLL~~k~~ 97 (601)
..|+..+.|
T Consensus 234 YELLTGk~P 242 (1021)
T PTZ00266 234 YELCSGKTP 242 (1021)
T ss_pred HHHHHCCCC
Confidence 344443444
No 112
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=25.36 E-value=88 Score=28.87 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=20.7
Q ss_pred hcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhh
Q 007501 207 VEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKG 243 (601)
Q Consensus 207 ~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~ 243 (601)
.-..+.....+.+||+|.. |.+..+..+..|++.|.
T Consensus 59 ~~~~~~L~~aK~~GFsD~~-IA~l~~~~e~~vr~~R~ 94 (123)
T PF02787_consen 59 ELDPELLRKAKRLGFSDRQ-IARLWGVSEEEVRELRK 94 (123)
T ss_dssp G--HHHHHHHHHTT--HHH-HHHHHTS-HHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHH-HHhccCCCHHHHHHHHH
Confidence 3456688889999999875 44445555556655554
No 113
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=24.72 E-value=2.1e+02 Score=24.13 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHH
Q 007501 296 RAKQKRVEEELEQEKKNQEEEERRLENPELYVEQ 329 (601)
Q Consensus 296 ~~k~~k~~e~~~~~~~~~~~e~~r~~~~~~w~~~ 329 (601)
.+..++.++.++.+.+..+-+.++..+|+.+|+.
T Consensus 30 k~~ee~r~e~e~~~~~~erk~rEKnksFeELL~e 63 (70)
T PF13025_consen 30 KAEEEKRKEEERARRREERKEREKNKSFEELLNE 63 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHhc
Confidence 3344444444433333333333447778776653
No 114
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=24.38 E-value=2.4e+02 Score=30.19 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.8
Q ss_pred hhhhhcccc
Q 007501 32 AAFSYKYNQ 40 (601)
Q Consensus 32 sllSlya~g 40 (601)
..+++|++|
T Consensus 67 ~~f~~yaTG 75 (321)
T PF07946_consen 67 NEFTFYATG 75 (321)
T ss_pred ceEEEEEeC
Confidence 344555655
No 115
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=3.3e+02 Score=32.90 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=5.6
Q ss_pred ecCCCCCCChHHH
Q 007501 522 TGGCCLFPGMSER 534 (601)
Q Consensus 522 tGG~S~~pGf~eR 534 (601)
|-|.-.|.++..|
T Consensus 547 tpghEsFtnlRsr 559 (1064)
T KOG1144|consen 547 TPGHESFTNLRSR 559 (1064)
T ss_pred CCCchhhhhhhhc
Confidence 3444444444444
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=1.6e+03 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=11.5
Q ss_pred hhHHhhhcCcEEecCC----CCCCChHH
Q 007501 510 DLEQRLTSSILMTGGC----CLFPGMSE 533 (601)
Q Consensus 510 d~r~~L~~NIvLtGG~----S~~pGf~e 533 (601)
|....-+++.-|+-|. +..||=.+
T Consensus 783 d~~~~~~n~~~~t~~aA~p~~tapg~~e 810 (1118)
T KOG1029|consen 783 DTKNESANAMGLTEGAAPPALTAPGQGE 810 (1118)
T ss_pred ccccchhhccCCCCCCCCccccCCCchh
Confidence 3444555555555332 23466444
No 117
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=20.17 E-value=98 Score=32.01 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=34.5
Q ss_pred cCcEEecCCCCCCChHHHHHHHHHhhCCCCCCeeEeeCCCCcccceehhhhhh
Q 007501 517 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 569 (601)
Q Consensus 517 ~NIvLtGG~S~~pGf~eRL~~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSila 569 (601)
.-|||.||.+..+-|-+++...+... +....+.|..+.-...++=+||+.++
T Consensus 235 e~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 235 QCVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CEEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHh
Confidence 34777777766777788888887765 22224566666555566677888775
Done!