BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007502
(601 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 522 HIHKCNIPILAIAGDQDLICPPEAVEETVKLLPEDLVTYKVFGEPSGPHYAHYDLVGGRM 581
++ N+PI G +DL+ P+ V + LP +L+ +K P Y H D +
Sbjct: 300 NVTAMNVPIAVWNGGKDLLADPQDVGLLLPKLP-NLIYHKEI-----PFYNHLDFIWAMD 353
Query: 582 AVEQVYPCIVQFL 594
A ++VY IV +
Sbjct: 354 APQEVYNDIVSMI 366
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 527 NIPILAIAGDQDLICPPEAVEETVKLLPEDLVTYKVFGEPSGPHYAHYDLVGGRMAVEQV 586
++PI G DL+ P V+ + LP + K+ P Y H D + A + V
Sbjct: 313 HVPIAVWNGGNDLLADPHDVDLLLSKLPNLIYHRKI------PPYNHLDFIWAMDAPQAV 366
Query: 587 YPCIVQFLG 595
Y IV +G
Sbjct: 367 YNEIVSMMG 375
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 518 FYKDHIHKCNIPILAIAGDQDLICPPEAVEETVKLLPEDLVTYKVFGEPSGPH 570
F KD + K NIP L I GD D P E + KL E + KV GPH
Sbjct: 213 FRKD-LEKFNIPTLIIHGDSDATVP---FEYSGKLTHEAIPNSKVALIKGGPH 261
>pdb|1ZI8|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant(E36d, C123s, A134s, S208g, A229v, K234r)- 1.4 A
Length = 236
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + S+
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVASK 135
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 507 EGGLR--DRGGKFFYKDHIHKCNIPILAIAGDQDLICPPEAV-EETVKLLP 554
EGG+R D G + + + K +IP L + GD D + P +A ++ +++P
Sbjct: 190 EGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIP 240
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 209 LSDSKIS--PVKKEDDLTRLATVW-DESKLVTKLTETFMSLSERLSGFLSENQSKIMSAK 265
L+D+K+ P +L L T+W ++KL F L L NQ K + +
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 266 LFDQISKLLEDSQLSEGFNEIRG-------KLSSLLERR 297
+FD ++KL + LS G+NE++ KL+SL E R
Sbjct: 128 VFDSLTKL---TYLSLGYNELQSLPKGVFDKLTSLKELR 163
>pdb|1ZI9|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(e36d, C123s) Mutant- 1.5 A
Length = 236
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,741,340
Number of Sequences: 62578
Number of extensions: 671958
Number of successful extensions: 1691
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1689
Number of HSP's gapped (non-prelim): 27
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)