BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007503
(601 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 190/294 (64%), Gaps = 28/294 (9%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
++ ELPLR +DF LHRNEASGAL+GLTR+R+F QDD HIFC SQ+K E+ L+ ID
Sbjct: 144 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDI 203
Query: 372 AY-RIFGF---------TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421
Y +IF F Y + STRP+ ++GDL W AE L E L E GKPW++N G
Sbjct: 204 VYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPG 263
Query: 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG 481
DGAFYGPK+DI V+D L++ Q AT+QLDFQLP+RF+L + +D + +RP+MIHRA G
Sbjct: 264 DGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNS-YKRPIMIHRATFG 322
Query: 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKS-----QPYALQ--VRDHIYRAG--- 531
S+ER A+L++ +G+WPFWL+P QA++ PV+ K+ ALQ +R+ +
Sbjct: 323 SIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEP 382
Query: 532 -------YYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQ 578
+ VD+D + + +++ A L Y+++++VG+EE + + ++R RD
Sbjct: 383 VPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDN 436
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
++ +LPLR+A+FG HRNE SG+L GL RVR F QDDAHIFC E QI+DEV G + +
Sbjct: 106 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYD 165
Query: 372 AYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430
Y FGF +KLSTRPEK +G W++AEA L AL E P++ G+GAFYGPKI
Sbjct: 166 MYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKI 225
Query: 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490
+ ++ D L R +QC T+QLDF LP R + Y ED + + PVMIHRAILGS+ER IL
Sbjct: 226 EFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGIL 284
Query: 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREA 550
E + G +P WL+P Q ++ +++ Y ++ + AG V D + KI K+RE
Sbjct: 285 TEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREH 344
Query: 551 QLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599
L + ++LV G++E +SG+V+VR R D +M + ++++ ++++ +
Sbjct: 345 TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 393
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
++ +LPLR+A+FG HRNE SG+L GL RVR F QDDAHIFC E QI+DEV G + +
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYD 406
Query: 372 AYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430
Y FGF +KLSTRPEK +G W++AEA L AL E P++ G+GAFYGPKI
Sbjct: 407 MYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKI 466
Query: 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490
+ ++ D L R +QC T+QLDF LP R + Y ED + + PVMIHRAILGS+ER IL
Sbjct: 467 EFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGIL 525
Query: 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREA 550
E + G +P WL+P Q ++ +++ Y ++ + AG V D + KI K+RE
Sbjct: 526 TEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREH 585
Query: 551 QLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599
L + ++LV G++E +SG+V+VR R D +M + ++++ ++++ +
Sbjct: 586 TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 10/230 (4%)
Query: 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145
ITLPDGS + SPMD+A I LA + VNG L D +E D L + T
Sbjct: 4 ITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITA 62
Query: 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKS 204
+EG + HS AH+LG AI+Q + K+ IGP G FYYD D L + ++
Sbjct: 63 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNG--FYYDVDL-DRTLTQEDVEA 119
Query: 205 IDSEADKAAKQPFERIE--VTRDQALEMFSD--NNFKVEIIN-DLPADKTITVYRCGPLV 259
++ + A++ ++ I+ V+ +A E F++ ++KV I++ ++ D +Y V
Sbjct: 120 LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYV 179
Query: 260 DLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRL 309
D+CRGPH+PN F F +K + AYWRG+ + + LQR+YG ++ DKK L
Sbjct: 180 DMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKAL 229
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 170/270 (62%), Gaps = 7/270 (2%)
Query: 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFID 370
H++ ELP+R+A+ G +HR EASGA++GL RVR +D+HIF R QIK+E + V+ I
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407
Query: 371 YAYRIFGFT-YELKLSTR----PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAF 425
Y+ FGF Y +LS R EKY D W KAE L EA +E G ++ G+ AF
Sbjct: 408 DVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAF 467
Query: 426 YGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVER 485
YGPK+D+ V A+ ++ +T QLDF LP+RF+L Y +D + RPV+IHR ++ ++ER
Sbjct: 468 YGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQD-GEHHRPVVIHRGVVSTMER 526
Query: 486 MFAILLEHYKGKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQ 544
A L E KG +P WL+P+Q + PV+ + YA Q++D + G V +D + K+
Sbjct: 527 FVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMG 586
Query: 545 KKVREAQLAQYNFILVVGEEEAKSGQVSVR 574
K+REAQ+ + + +VVG++E ++ QV+VR
Sbjct: 587 YKIREAQMQKIPYQIVVGDKEVENNQVNVR 616
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 138/230 (60%), Gaps = 7/230 (3%)
Query: 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLF 143
I I PDG+ K + T+ DIAQ IS L A+ NG L D+T+PLE D +++
Sbjct: 4 INIQFPDGNKKAFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 62
Query: 144 TFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHF 202
T S+E + HS+AH++ AI++ YG K +GP G FYYD F D ++ D F
Sbjct: 63 TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGG--FYYD-FDIDQNISSDDF 119
Query: 203 KSIDSEADKAAKQ--PFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVD 260
+ I+ + + ER V+RD+A E+FS++ +K+E+I+ +P D+ +T+Y G D
Sbjct: 120 EQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTD 179
Query: 261 LCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLK 310
LCRG H+P+T+ +K F L + AYWRG+ + + LQR+YG ++ DKK LK
Sbjct: 180 LCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELK 229
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 26/288 (9%)
Query: 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-R 374
LP ++ +FG +HR E SG++ GL RVR F QDDAHI ++ D V V E + R
Sbjct: 132 LPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLER 191
Query: 375 IFGF-----TYELKLSTR-----PEKYLGDLATWEKAEAALTEALNEFGKPWQIN----E 420
+F T++++LS ++++G WE AE AL EA + + + I+ E
Sbjct: 192 LFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELE 251
Query: 421 GDGAFYGPKIDISV---SDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHR 477
G+ AFYGPK+D + + +++Q T+Q DF LP RF L +E E +IHR
Sbjct: 252 GEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHR 311
Query: 478 AILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS------EKSQPYALQVRDHIYRAG 531
A+LGS+ER + LEH +G+ PF L+P Q V V + + A + + G
Sbjct: 312 ALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKG 371
Query: 532 YYVDVDTTDRK-IQKKVREAQ-LAQYNFILVVGEEEAKSGQVSVRVRD 577
+ V V + + + VR + A+ + +G +E + + VRV D
Sbjct: 372 FRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFD 419
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-R 374
LP ++ +FG +HR E SG++ GL RVR F QDDAHI ++ D V V E R
Sbjct: 132 LPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEXKLVLER 191
Query: 375 IFGF-----TYELKLSTR-----PEKYLGDLATWEKAEAALTEALNEFGKPWQIN----E 420
+F T++++LS +++ G WE AE AL EA + + + I+ E
Sbjct: 192 LFKLGVSSETFKVRLSXSDKSLIGKEFXGSKEEWEGAEEALREAASRINEKYGIDIVELE 251
Query: 421 GDGAFYGPKIDISV---SDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHR 477
G+ AFYGPK+D + +++Q T+Q DF LP RF L +E E +IHR
Sbjct: 252 GEAAFYGPKLDFIXXVEESGVSKEWQXGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHR 311
Query: 478 AILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPV 512
A+LGS+ER + LEH +G+ PF L+P Q V V
Sbjct: 312 ALLGSIERFLGVYLEHRRGRXPFTLAPIQFAVIAV 346
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145
ITLPDGS + SPMD+A I LA + VNG L D +E D L + T
Sbjct: 4 ITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITA 62
Query: 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKS 204
+EG + HS AH+LG AI+Q + K+ IGP G FYYD D L + ++
Sbjct: 63 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNG--FYYDVDL-DRTLTQEDVEA 119
Query: 205 IDSEADKAAKQPFERIE--VTRDQALEMFSD--NNFKVEIIN-DLPADKTITVYRCGPLV 259
++ + A++ ++ I+ V+ +A E F++ ++KV I++ ++ D +Y V
Sbjct: 120 LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYV 179
Query: 260 DLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISY 303
D+CRGPH+PN F F +K + AYWRG+ + + LQR+YG ++
Sbjct: 180 DMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl-
Trna Synthetase
Length = 88
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKL 142
PIK+TLPDG + + W+T+P IA GIS+ LA N +I+ VN V+WD+ RPLE DC L+L
Sbjct: 11 PIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLEL 70
Query: 143 FTFDSDEGRDTF 154
F+ +E + +
Sbjct: 71 LKFEDEEAQAVY 82
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 51/87 (58%)
Query: 509 VCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKS 568
+ + +++ YA+++ +H+ G D D RKI+ ++++A F +V+G++E ++
Sbjct: 334 IVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELEN 393
Query: 569 GQVSVRVRDQGDHSNMSIEDLLKHFKE 595
++ V+ G+ + ++ L+++FK+
Sbjct: 394 NKIDVKNMTTGESETIELDALVEYFKK 420
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%)
Query: 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVG 562
+P Q +V ++ P L+V + +AG V + R++ K+ + A F +++G
Sbjct: 370 TPAQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIG 429
Query: 563 EEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 597
+EA + + S++ G+ +++ DL + K +L
Sbjct: 430 ADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464
>pdb|4F3Y|A Chain A, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
pdb|4F3Y|B Chain B, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
Length = 272
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 396 ATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPD 455
A +A L AL+ G P Q+ + GAF G + ++++D ++R A +DF LP+
Sbjct: 26 AVLAAPDATLVGALDRTGSP-QLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE 84
>pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak,
Minimized Average Structure
pdb|2BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + FE + TR+Q + +VE D LPAD
Sbjct: 136 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 190
>pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPO|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPP|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPP|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPQ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|E Chain E, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|F Chain F, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3QNJ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|3QNJ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|4E81|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
pdb|4E81|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
Length = 219
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + FE + TR+Q + +VE D LPAD
Sbjct: 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
Length = 219
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + FE + TR+Q + +VE D LPAD
Sbjct: 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
>pdb|2X6F|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6F|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6H|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6H|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6I|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6I|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6J|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6J|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6K|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
pdb|2X6K|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
Length = 696
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 43 PSPNPVKDEEYLIKVIPKRISLFQS 67
P P P+ E Y+ K++P R SLF+S
Sbjct: 398 PIPFPLDPEIYITKIVPMRTSLFKS 422
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 482 SVERMFAILLEHYKG-KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDV-DTT 539
VER+F+I+ + + + + Q +V +K L++ ++ AG ++
Sbjct: 343 GVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKK 402
Query: 540 DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 596
+ K+ +++ + A + ++GE+E K G + +R + ++ EDL++ K +
Sbjct: 403 NPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 459
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 482 SVERMFAILLEHYKG-KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDV-DTT 539
VER+F+I+ + + + + Q +V +K L++ ++ AG ++
Sbjct: 396 GVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKK 455
Query: 540 DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 596
+ K+ +++ + A + ++GE+E K G + +R + ++ EDL++ K +
Sbjct: 456 NPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 512
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + F+ + TR+Q + +VE D LPAD
Sbjct: 118 GLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + F+ + TR+Q + +VE D LPAD
Sbjct: 506 GLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,899,595
Number of Sequences: 62578
Number of extensions: 756432
Number of successful extensions: 1774
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1738
Number of HSP's gapped (non-prelim): 30
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)