Query 007503
Match_columns 601
No_of_seqs 449 out of 3096
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 11:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 100.0 8E-121 2E-125 1039.7 57.9 557 40-601 12-686 (686)
2 PRK12444 threonyl-tRNA synthet 100.0 1E-101 3E-106 880.0 56.1 515 82-601 4-639 (639)
3 KOG1637 Threonyl-tRNA syntheta 100.0 3E-104 6E-109 816.0 24.1 439 84-600 2-558 (560)
4 PRK00413 thrS threonyl-tRNA sy 100.0 2E-95 4E-100 831.4 52.9 513 84-601 2-636 (638)
5 COG0441 ThrS Threonyl-tRNA syn 100.0 9.1E-92 2E-96 770.2 39.4 463 118-600 2-583 (589)
6 PLN02837 threonine-tRNA ligase 100.0 5.1E-88 1.1E-92 760.7 45.7 457 137-600 29-611 (614)
7 PRK12305 thrS threonyl-tRNA sy 100.0 8.6E-87 1.9E-91 751.2 45.4 451 146-601 1-573 (575)
8 TIGR00418 thrS threonyl-tRNA s 100.0 1.4E-78 3E-83 683.2 41.3 437 155-595 1-561 (563)
9 PRK14799 thrS threonyl-tRNA sy 100.0 2E-74 4.4E-79 636.6 34.6 369 222-600 46-534 (545)
10 PRK03991 threonyl-tRNA synthet 100.0 2.1E-48 4.5E-53 435.8 24.0 282 311-600 302-595 (613)
11 PRK12325 prolyl-tRNA synthetas 100.0 3.3E-40 7.1E-45 359.8 22.7 272 311-594 123-438 (439)
12 cd00771 ThrRS_core Threonyl-tR 100.0 4.1E-40 9E-45 342.2 14.8 192 312-504 106-298 (298)
13 PRK04173 glycyl-tRNA synthetas 100.0 9.5E-39 2.1E-43 348.5 25.7 260 303-596 171-455 (456)
14 COG0124 HisS Histidyl-tRNA syn 100.0 7.7E-39 1.7E-43 342.1 21.2 266 315-597 99-428 (429)
15 TIGR00408 proS_fam_I prolyl-tR 100.0 4.8E-36 1E-40 329.1 18.4 253 311-600 119-384 (472)
16 PRK08661 prolyl-tRNA synthetas 100.0 7.9E-35 1.7E-39 320.2 18.2 252 310-599 124-389 (477)
17 CHL00201 syh histidine-tRNA sy 100.0 4.4E-33 9.5E-38 303.4 25.1 267 313-598 98-419 (430)
18 PRK09194 prolyl-tRNA synthetas 100.0 6.2E-32 1.3E-36 303.6 22.3 139 453-594 416-561 (565)
19 PLN02530 histidine-tRNA ligase 100.0 1.4E-30 3.1E-35 287.6 20.3 261 315-589 162-486 (487)
20 TIGR00409 proS_fam_II prolyl-t 100.0 6.1E-30 1.3E-34 285.8 22.0 138 455-595 423-567 (568)
21 PRK00037 hisS histidyl-tRNA sy 100.0 2.1E-29 4.5E-34 273.9 24.0 259 316-597 97-411 (412)
22 PLN02972 Histidyl-tRNA synthet 100.0 5E-28 1.1E-32 272.2 23.7 270 316-598 416-761 (763)
23 PRK14894 glycyl-tRNA synthetas 100.0 2.5E-28 5.5E-33 260.5 19.9 276 303-598 150-538 (539)
24 TIGR00389 glyS_dimeric glycyl- 100.0 1.1E-27 2.5E-32 262.7 20.5 296 292-596 161-550 (551)
25 PRK12420 histidyl-tRNA synthet 100.0 1.5E-27 3.2E-32 260.0 19.3 255 315-589 97-422 (423)
26 TIGR00442 hisS histidyl-tRNA s 99.9 3.6E-26 7.9E-31 247.3 22.9 250 313-579 93-397 (397)
27 KOG1936 Histidyl-tRNA syntheta 99.9 1E-25 2.3E-30 232.2 17.1 271 317-598 150-516 (518)
28 PLN02734 glycyl-tRNA synthetas 99.9 2.2E-24 4.8E-29 240.0 23.7 298 292-600 253-664 (684)
29 COG0423 GRS1 Glycyl-tRNA synth 99.9 9.9E-25 2.2E-29 231.9 18.6 320 262-598 135-552 (558)
30 KOG2324 Prolyl-tRNA synthetase 99.8 1.5E-20 3.3E-25 190.3 15.8 349 184-593 42-426 (457)
31 PRK12292 hisZ ATP phosphoribos 99.8 1.1E-19 2.4E-24 196.2 15.7 221 315-555 96-378 (391)
32 cd00862 ProRS_anticodon_zinc P 99.8 4.6E-18 1E-22 167.1 13.0 105 496-600 2-113 (202)
33 cd00858 GlyRS_anticodon GlyRS 99.8 5.7E-18 1.2E-22 153.1 12.3 100 497-597 19-120 (121)
34 KOG2298 Glycyl-tRNA synthetase 99.7 2.5E-18 5.4E-23 179.5 9.5 128 471-600 456-595 (599)
35 COG0442 ProS Prolyl-tRNA synth 99.7 1.1E-17 2.4E-22 182.0 14.4 276 310-593 122-498 (500)
36 PRK12421 ATP phosphoribosyltra 99.7 3E-17 6.6E-22 176.9 15.9 217 315-564 99-384 (392)
37 PRK01584 alanyl-tRNA synthetas 99.7 4.5E-17 9.7E-22 180.6 16.3 136 151-301 452-591 (594)
38 KOG4163 Prolyl-tRNA synthetase 99.7 3.2E-18 6.8E-23 176.8 4.5 263 302-599 170-450 (551)
39 PF03129 HGTP_anticodon: Antic 99.7 2.9E-17 6.2E-22 141.5 9.5 91 506-596 1-94 (94)
40 PRK14938 Ser-tRNA(Thr) hydrola 99.7 1.6E-16 3.6E-21 165.9 13.6 114 482-595 248-365 (387)
41 cd00861 ProRS_anticodon_short 99.7 2E-16 4.2E-21 136.0 10.0 90 504-593 1-93 (94)
42 cd00670 Gly_His_Pro_Ser_Thr_tR 99.7 1.1E-16 2.5E-21 160.6 8.6 151 312-490 83-234 (235)
43 cd02426 Pol_gamma_b_Cterm C-te 99.7 6.1E-16 1.3E-20 140.9 11.6 103 496-598 19-127 (128)
44 cd00778 ProRS_core_arch_euk Pr 99.7 8.9E-17 1.9E-21 164.3 5.8 144 311-491 113-259 (261)
45 TIGR00344 alaS alanine--tRNA l 99.6 7.1E-15 1.5E-19 171.1 17.7 162 123-300 523-693 (851)
46 PRK00252 alaS alanyl-tRNA synt 99.6 7.1E-15 1.5E-19 171.8 17.4 161 124-300 517-686 (865)
47 cd00860 ThrRS_anticodon ThrRS 99.6 5.5E-15 1.2E-19 125.9 11.5 90 504-593 1-90 (91)
48 TIGR03683 A-tRNA_syn_arch alan 99.6 2.2E-14 4.7E-19 167.5 16.9 162 123-299 562-731 (902)
49 PLN02900 alanyl-tRNA synthetas 99.6 4.1E-14 9E-19 165.3 19.1 165 123-302 561-735 (936)
50 PRK13902 alaS alanyl-tRNA synt 99.6 8.7E-14 1.9E-18 162.5 19.0 162 123-299 558-727 (900)
51 cd00738 HGTP_anticodon HGTP an 99.6 3E-14 6.5E-19 122.0 11.2 90 504-593 1-93 (94)
52 COG0013 AlaS Alanyl-tRNA synth 99.5 1.5E-13 3.4E-18 156.5 14.2 132 153-298 564-698 (879)
53 cd00773 HisRS-like_core Class 99.5 1.3E-13 2.9E-18 141.0 11.6 143 315-490 80-260 (261)
54 PLN02961 alanine-tRNA ligase 99.5 8.5E-13 1.9E-17 131.8 15.0 186 84-282 3-211 (223)
55 cd00779 ProRS_core_prok Prolyl 99.4 8.3E-14 1.8E-18 142.0 4.3 144 312-493 108-255 (255)
56 cd00770 SerRS_core Seryl-tRNA 99.4 4.4E-13 9.4E-18 139.6 9.3 150 312-494 126-280 (297)
57 TIGR00443 hisZ_biosyn_reg ATP 99.4 8.7E-13 1.9E-17 138.6 10.6 68 314-388 84-153 (314)
58 COG2872 Predicted metal-depend 99.4 2.9E-12 6.2E-17 127.7 12.6 191 93-299 32-231 (241)
59 PRK05431 seryl-tRNA synthetase 99.4 1.6E-12 3.5E-17 141.5 9.0 161 312-505 245-415 (425)
60 cd00772 ProRS_core Prolyl-tRNA 99.3 1.8E-12 3.8E-17 132.8 8.0 84 312-396 114-199 (264)
61 TIGR00414 serS seryl-tRNA synt 99.3 3.5E-12 7.6E-17 138.5 9.3 161 312-505 247-417 (418)
62 cd00859 HisRS_anticodon HisRS 99.3 1.4E-11 3E-16 104.0 10.1 88 506-593 3-90 (91)
63 PF02824 TGS: TGS domain; Int 99.3 8.8E-12 1.9E-16 98.3 6.6 60 84-144 1-60 (60)
64 PRK12293 hisZ ATP phosphoribos 99.2 3.8E-11 8.1E-16 124.0 8.8 59 315-388 93-151 (281)
65 PF00587 tRNA-synt_2b: tRNA sy 99.2 4.1E-11 8.8E-16 115.0 6.7 76 313-389 79-155 (173)
66 PRK12295 hisZ ATP phosphoribos 99.2 8E-11 1.7E-15 126.2 9.4 64 315-388 80-146 (373)
67 cd00774 GlyRS-like_core Glycyl 99.1 1E-10 2.2E-15 119.3 7.8 106 308-414 97-206 (254)
68 PRK00960 seryl-tRNA synthetase 99.1 4.5E-11 9.8E-16 131.4 4.9 76 312-388 330-406 (517)
69 PLN02320 seryl-tRNA synthetase 99.1 1.7E-10 3.7E-15 126.1 6.8 76 312-387 308-387 (502)
70 PF13393 tRNA-synt_His: Histid 99.0 4E-10 8.6E-15 118.2 6.1 68 314-388 85-155 (311)
71 PLN02678 seryl-tRNA synthetase 99.0 9.8E-10 2.1E-14 119.5 7.2 73 312-384 250-327 (448)
72 PF07973 tRNA_SAD: Threonyl an 98.9 1.6E-09 3.4E-14 79.8 3.6 43 250-299 1-44 (44)
73 KOG0188 Alanyl-tRNA synthetase 98.8 4.7E-08 1E-12 108.0 11.7 136 153-302 568-709 (895)
74 COG3705 HisZ ATP phosphoribosy 98.7 2.6E-08 5.7E-13 105.8 7.9 129 264-412 48-187 (390)
75 TIGR00415 serS_MJ seryl-tRNA s 98.7 6E-08 1.3E-12 105.7 9.2 76 312-388 330-406 (520)
76 cd01667 TGS_ThrRS_N TGS _ThrRS 98.7 6.4E-08 1.4E-12 75.2 6.8 61 84-145 1-61 (61)
77 smart00863 tRNA_SAD Threonyl a 98.6 2.6E-08 5.6E-13 73.4 3.9 38 250-287 1-39 (44)
78 cd00768 class_II_aaRS-like_cor 98.5 1.4E-07 3.1E-12 92.3 5.6 137 314-486 72-211 (211)
79 PF12745 HGTP_anticodon2: Anti 98.3 7.4E-06 1.6E-10 84.1 12.4 98 503-600 4-109 (273)
80 cd01616 TGS The TGS domain, na 98.2 4.2E-06 9E-11 64.4 6.1 59 85-144 2-60 (60)
81 KOG2105 Predicted metal-depend 98.0 3.5E-05 7.6E-10 77.3 10.7 142 129-284 85-234 (415)
82 cd01668 TGS_RelA_SpoT TGS_RelA 97.9 2.3E-05 4.9E-10 61.2 6.2 60 84-144 1-60 (60)
83 TIGR02367 PylS pyrrolysyl-tRNA 97.6 0.0001 2.2E-09 79.5 6.0 60 315-383 316-376 (453)
84 PRK07080 hypothetical protein; 97.5 0.00031 6.8E-09 72.5 8.6 68 318-388 153-220 (317)
85 KOG2509 Seryl-tRNA synthetase 97.5 0.00023 5E-09 75.6 7.5 80 314-395 263-345 (455)
86 COG0442 ProS Prolyl-tRNA synth 97.1 0.001 2.2E-08 73.7 7.1 103 496-598 277-390 (500)
87 PRK09537 pylS pyrolysyl-tRNA s 97.1 0.00087 1.9E-08 72.5 6.0 63 313-383 278-340 (417)
88 PRK12294 hisZ ATP phosphoribos 97.0 0.001 2.2E-08 68.6 5.7 59 316-388 83-143 (272)
89 PTZ00326 phenylalanyl-tRNA syn 97.0 0.0011 2.4E-08 73.0 6.0 59 317-383 357-416 (494)
90 COG0172 SerS Seryl-tRNA synthe 96.5 0.0056 1.2E-07 66.3 7.1 71 314-384 250-323 (429)
91 KOG1035 eIF-2alpha kinase GCN2 96.4 0.036 7.8E-07 66.2 13.5 90 503-597 1258-1350(1351)
92 PRK11092 bifunctional (p)ppGpp 96.1 0.0086 1.9E-07 69.5 6.3 65 82-147 386-450 (702)
93 COG0317 SpoT Guanosine polypho 95.8 0.019 4.1E-07 65.8 7.2 66 81-147 386-451 (701)
94 PRK07440 hypothetical protein; 95.6 0.059 1.3E-06 43.8 7.5 60 82-145 3-66 (70)
95 PRK04172 pheS phenylalanyl-tRN 95.6 0.02 4.4E-07 64.1 6.2 63 313-383 346-409 (489)
96 PRK05659 sulfur carrier protei 95.4 0.06 1.3E-06 42.9 6.8 58 84-145 1-62 (66)
97 COG2104 ThiS Sulfur transfer p 95.2 0.084 1.8E-06 42.6 7.0 59 83-145 2-64 (68)
98 PRK10872 relA (p)ppGpp synthet 95.1 0.037 8E-07 64.4 6.3 65 82-147 404-468 (743)
99 TIGR00691 spoT_relA (p)ppGpp s 95.0 0.044 9.6E-07 63.7 6.7 66 81-147 359-424 (683)
100 PRK08364 sulfur carrier protei 94.6 0.11 2.5E-06 42.1 6.3 59 83-145 4-66 (70)
101 cd00565 ThiS ThiaminS ubiquiti 93.8 0.16 3.5E-06 40.4 5.7 57 86-146 2-62 (65)
102 PRK06488 sulfur carrier protei 93.8 0.22 4.8E-06 39.6 6.5 57 84-145 1-61 (65)
103 PRK07696 sulfur carrier protei 93.8 0.21 4.7E-06 40.1 6.4 59 84-145 1-63 (67)
104 PRK06944 sulfur carrier protei 93.7 0.21 4.6E-06 39.5 6.3 57 84-145 1-61 (65)
105 PRK08053 sulfur carrier protei 93.6 0.28 6.2E-06 39.2 6.8 58 84-145 1-62 (66)
106 PRK06083 sulfur carrier protei 92.3 0.69 1.5E-05 39.0 7.5 61 81-145 16-80 (84)
107 cd00669 Asp_Lys_Asn_RS_core As 90.6 0.35 7.6E-06 49.9 4.9 33 319-355 71-103 (269)
108 PRK06437 hypothetical protein; 90.2 1 2.2E-05 36.2 6.3 52 92-146 13-64 (67)
109 cd00777 AspRS_core Asp tRNA sy 90.2 0.38 8.2E-06 49.9 4.7 34 318-355 70-103 (280)
110 PRK05863 sulfur carrier protei 90.0 0.76 1.6E-05 36.6 5.4 58 84-145 1-61 (65)
111 TIGR01683 thiS thiamine biosyn 89.6 1 2.3E-05 35.6 5.9 53 90-145 4-60 (64)
112 PF01409 tRNA-synt_2d: tRNA sy 87.6 1.4 3E-05 44.9 6.7 65 312-384 97-162 (247)
113 TIGR00470 sepS O-phosphoseryl- 87.3 1.1 2.4E-05 49.2 6.0 64 314-385 204-269 (533)
114 PRK11840 bifunctional sulfur c 85.4 2 4.3E-05 45.2 6.4 58 84-145 1-62 (326)
115 PRK09350 poxB regulator PoxA; 84.8 0.5 1.1E-05 49.7 1.8 34 318-355 79-112 (306)
116 PRK01777 hypothetical protein; 84.0 4.4 9.4E-05 35.0 7.0 56 94-150 21-84 (95)
117 cd00754 MoaD Ubiquitin domain 81.3 3.2 6.9E-05 33.9 5.0 46 100-145 25-76 (80)
118 cd01666 TGS_DRG_C TGS_DRG_C: 81.0 2.5 5.5E-05 34.8 4.2 51 93-144 18-75 (75)
119 COG2024 Phenylalanyl-tRNA synt 79.5 1.3 2.9E-05 46.9 2.5 170 315-530 205-392 (536)
120 PLN02853 Probable phenylalanyl 79.1 3.7 8.1E-05 45.7 6.0 61 316-384 341-402 (492)
121 cd01669 TGS_Ygr210_C TGS_Ygr21 77.5 4.9 0.00011 33.2 4.9 49 94-144 25-76 (76)
122 PF02597 ThiS: ThiS family; I 77.4 5.1 0.00011 32.4 5.0 46 100-145 21-73 (77)
123 TIGR00459 aspS_bact aspartyl-t 76.2 2.9 6.2E-05 47.8 4.2 34 318-355 207-240 (583)
124 PLN02903 aminoacyl-tRNA ligase 75.8 3.2 7E-05 47.8 4.5 34 318-355 273-306 (652)
125 COG0173 AspS Aspartyl-tRNA syn 75.3 5.4 0.00012 44.7 5.9 81 290-379 182-266 (585)
126 PLN02799 Molybdopterin synthas 74.7 6 0.00013 32.8 4.8 46 100-145 28-78 (82)
127 cd00775 LysRS_core Lys_tRNA sy 74.3 4.3 9.3E-05 43.1 4.8 34 318-355 77-110 (329)
128 PRK00476 aspS aspartyl-tRNA sy 72.8 3.9 8.4E-05 46.9 4.2 34 318-355 210-243 (588)
129 cd00776 AsxRS_core Asx tRNA sy 72.6 4.2 9.2E-05 43.0 4.2 36 318-356 90-125 (322)
130 TIGR00458 aspS_arch aspartyl-t 72.1 6.1 0.00013 43.6 5.5 34 318-355 200-234 (428)
131 PF00152 tRNA-synt_2: tRNA syn 72.1 6.2 0.00014 41.9 5.4 50 318-371 94-145 (335)
132 TIGR00559 pdxJ pyridoxine 5'-p 69.0 26 0.00056 35.3 8.5 66 484-560 73-150 (237)
133 PRK12820 bifunctional aspartyl 67.3 6.1 0.00013 46.1 4.3 34 318-355 225-258 (706)
134 cd00003 PNPsynthase Pyridoxine 64.8 36 0.00078 34.3 8.5 57 502-560 82-150 (234)
135 PF14453 ThiS-like: ThiS-like 64.1 24 0.00052 27.5 5.7 54 85-144 2-55 (57)
136 PRK05265 pyridoxine 5'-phospha 62.3 37 0.00081 34.3 8.2 57 502-560 85-153 (239)
137 PF03740 PdxJ: Pyridoxal phosp 62.2 38 0.00082 34.2 8.3 66 484-560 74-151 (239)
138 PRK00484 lysS lysyl-tRNA synth 62.2 11 0.00023 42.5 4.9 34 318-355 241-274 (491)
139 PRK00488 pheS phenylalanyl-tRN 60.8 17 0.00037 38.7 5.9 63 314-384 182-245 (339)
140 COG0017 AsnS Aspartyl/asparagi 58.0 9.6 0.00021 41.8 3.5 34 318-355 200-234 (435)
141 COG0016 PheS Phenylalanyl-tRNA 57.9 14 0.0003 39.2 4.6 60 317-384 192-252 (335)
142 TIGR01682 moaD molybdopterin c 56.8 27 0.00059 28.7 5.3 45 100-144 26-75 (80)
143 TIGR00462 genX lysyl-tRNA synt 54.4 5.2 0.00011 42.0 0.7 34 318-355 74-107 (304)
144 TIGR00468 pheS phenylalanyl-tR 53.1 20 0.00044 37.4 4.9 56 316-379 149-204 (294)
145 PRK12445 lysyl-tRNA synthetase 52.4 16 0.00036 41.1 4.3 34 318-355 253-286 (505)
146 PRK03932 asnC asparaginyl-tRNA 52.1 18 0.00039 40.2 4.5 35 318-355 208-242 (450)
147 PTZ00385 lysyl-tRNA synthetase 50.3 18 0.00039 41.9 4.2 34 318-355 302-335 (659)
148 KOG2411 Aspartyl-tRNA syntheta 49.7 19 0.00041 39.9 4.0 55 296-356 226-282 (628)
149 PRK06462 asparagine synthetase 49.3 18 0.00038 38.6 3.8 37 318-355 103-139 (335)
150 TIGR00457 asnS asparaginyl-tRN 49.1 18 0.00039 40.3 3.9 35 318-355 211-245 (453)
151 PRK11130 moaD molybdopterin sy 48.6 84 0.0018 25.9 7.0 45 100-144 25-76 (81)
152 PLN02502 lysyl-tRNA synthetase 48.2 16 0.00036 41.5 3.5 34 318-355 298-331 (553)
153 PLN02850 aspartate-tRNA ligase 47.4 14 0.0003 41.9 2.8 35 318-355 292-327 (530)
154 PTZ00417 lysine-tRNA ligase; P 46.6 26 0.00057 40.2 4.8 34 318-355 322-355 (585)
155 COG1854 LuxS LuxS protein invo 46.2 80 0.0017 29.7 6.9 56 155-213 53-111 (161)
156 PLN02221 asparaginyl-tRNA synt 46.0 22 0.00047 40.7 4.0 33 318-353 327-359 (572)
157 PRK05159 aspC aspartyl-tRNA sy 45.8 24 0.00052 39.0 4.3 34 318-355 203-237 (437)
158 TIGR00499 lysS_bact lysyl-tRNA 44.8 19 0.00041 40.5 3.3 34 318-355 241-274 (496)
159 cd04938 TGS_Obg-like TGS_Obg-l 44.4 64 0.0014 26.5 5.6 44 100-143 31-75 (76)
160 cd00496 PheRS_alpha_core Pheny 44.1 39 0.00085 33.5 5.1 55 315-377 78-132 (218)
161 PTZ00401 aspartyl-tRNA synthet 43.7 17 0.00038 41.3 2.8 34 318-355 280-315 (550)
162 PLN02532 asparagine-tRNA synth 41.6 27 0.00059 40.3 3.9 35 318-355 390-424 (633)
163 PTZ00425 asparagine-tRNA ligas 41.3 34 0.00075 39.2 4.7 34 318-355 344-378 (586)
164 PLN02603 asparaginyl-tRNA synt 40.0 37 0.0008 38.9 4.6 33 318-354 322-355 (565)
165 PF01520 Amidase_3: N-acetylmu 39.5 97 0.0021 29.1 6.9 49 516-564 26-77 (175)
166 PTZ00305 NADH:ubiquinone oxido 39.0 1.3E+02 0.0027 31.6 7.9 75 84-163 69-160 (297)
167 TIGR01687 moaD_arch MoaD famil 36.3 1.1E+02 0.0024 25.4 6.0 45 100-144 24-83 (88)
168 PF08357 SEFIR: SEFIR domain; 32.5 94 0.002 28.4 5.5 57 506-563 2-67 (150)
169 COG0854 PdxJ Pyridoxal phospha 32.2 1.1E+02 0.0025 30.5 6.0 56 503-560 84-151 (243)
170 cd05569 PTS_IIB_fructose PTS_I 31.1 1.6E+02 0.0034 25.2 6.2 73 519-597 17-91 (96)
171 TIGR00640 acid_CoA_mut_C methy 30.8 3E+02 0.0065 25.0 8.3 57 506-562 4-61 (132)
172 PF00731 AIRC: AIR carboxylase 30.1 1.6E+02 0.0034 27.7 6.4 56 506-561 2-62 (150)
173 PLN03194 putative disease resi 29.5 2.7E+02 0.0059 27.2 8.0 62 503-565 25-92 (187)
174 COG2185 Sbm Methylmalonyl-CoA 29.3 2.5E+02 0.0055 26.1 7.5 55 504-558 12-67 (143)
175 PF10752 DUF2533: Protein of u 28.6 97 0.0021 25.9 4.1 37 194-230 42-80 (84)
176 cd01917 ACS_2 Acetyl-CoA synth 27.6 7.2E+02 0.016 25.9 11.1 59 500-562 124-184 (287)
177 cd02071 MM_CoA_mut_B12_BD meth 27.2 3.4E+02 0.0074 24.0 8.0 48 514-561 10-57 (122)
178 PF03853 YjeF_N: YjeF-related 27.2 1.9E+02 0.0042 27.3 6.7 94 503-596 24-130 (169)
179 PRK02983 lysS lysyl-tRNA synth 26.9 52 0.0011 40.8 3.3 34 318-355 839-872 (1094)
180 TIGR00262 trpA tryptophan synt 26.2 4.5E+02 0.0096 26.8 9.5 69 482-562 103-171 (256)
181 PF14451 Ub-Mut7C: Mut7-C ubiq 26.2 1.3E+02 0.0028 25.2 4.6 46 99-145 31-76 (81)
182 cd02696 MurNAc-LAA N-acetylmur 24.7 2.5E+02 0.0054 26.2 6.9 50 516-565 27-79 (172)
183 KOG2784 Phenylalanyl-tRNA synt 24.4 41 0.00089 35.9 1.5 55 317-379 333-387 (483)
184 PF13510 Fer2_4: 2Fe-2S iron-s 24.2 74 0.0016 26.4 2.8 29 82-112 2-30 (82)
185 PRK10427 putative PTS system f 23.3 4E+02 0.0086 23.7 7.4 67 521-593 23-92 (114)
186 cd02067 B12-binding B12 bindin 22.6 4.8E+02 0.011 22.6 8.0 40 521-560 17-56 (119)
187 PF02780 Transketolase_C: Tran 22.2 1.4E+02 0.0031 26.3 4.5 32 505-537 10-41 (124)
188 PRK10319 N-acetylmuramoyl-l-al 21.6 2.7E+02 0.0059 29.0 7.0 50 516-565 84-136 (287)
189 cd04724 Tryptophan_synthase_al 21.1 3.8E+02 0.0082 27.0 7.8 70 482-563 92-161 (242)
190 cd02071 MM_CoA_mut_B12_BD meth 20.5 3.8E+02 0.0083 23.7 6.9 71 482-562 38-110 (122)
191 PRK02260 S-ribosylhomocysteina 20.5 3.6E+02 0.0079 25.6 6.8 55 155-213 53-111 (158)
192 PRK07569 bidirectional hydroge 20.5 4.1E+02 0.009 26.5 7.9 55 82-138 2-72 (234)
193 PRK07860 NADH dehydrogenase su 20.1 3.8E+02 0.0083 32.1 8.7 80 81-163 2-97 (797)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=8e-121 Score=1039.65 Aligned_cols=557 Identities=76% Similarity=1.250 Sum_probs=535.0
Q ss_pred cCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhhCCCCCCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceE
Q 007503 40 CAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANAL 119 (601)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v 119 (601)
+....+...++|+|++ +|++||++++++|++++++++.++|+|++|||+++++++|+|||+|||+++++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~----~r~~~f~~~~~~~~~~~~~~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v 87 (686)
T PLN02908 12 APSHPSDEEYLSAVIK----KRIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSAL 87 (686)
T ss_pred cccCCCCcCCCchhHH----HHHHHHHHHHHHHHHHhhhccCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcE
Confidence 3344556778999999 999999999999999999888899999999999999999999999999999999999999
Q ss_pred EEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCH
Q 007503 120 ISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNP 199 (601)
Q Consensus 120 ~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ 199 (601)
+|+|||++|||++||++||+|+|++|++++|+++||||++|||++|++++||+++++||+++.++|||||+.+++.++|+
T Consensus 88 ~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ 167 (686)
T PLN02908 88 IAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNE 167 (686)
T ss_pred EEEECCEEeecCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999997558999999875568999
Q ss_pred hHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEE
Q 007503 200 DHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFG 277 (601)
Q Consensus 200 edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~ 277 (601)
+|+++||++|+++| |+||++.+|+++||++||++++||++|++.++++..|++|+||+|+|+|+||||||||+|+.|+
T Consensus 168 edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~~D~c~Gphv~sTg~ik~f~ 247 (686)
T PLN02908 168 EDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPLVDLCRGPHIPNTSFVKAFA 247 (686)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCEEEecCCCCCCCCCccceeE
Confidence 99999999999999 9999999999999999999999999999988656789999999999999999999999999999
Q ss_pred EeeeccceeccCCCCCCcceeeccccccchhhhh----------------------------------------------
Q 007503 278 CLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH---------------------------------------------- 311 (601)
Q Consensus 278 l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~---------------------------------------------- 311 (601)
|+++++|||+|+.+++++|||||++||++++|.+
T Consensus 248 l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l 327 (686)
T PLN02908 248 CLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKL 327 (686)
T ss_pred EEEecceEEcCCCcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHH
Confidence 9999999999999999999999999999999965
Q ss_pred ---------------------------------------------------------------------hhccCceeeee
Q 007503 312 ---------------------------------------------------------------------AFAELPLRLAD 322 (601)
Q Consensus 312 ---------------------------------------------------------------------s~relplr~~~ 322 (601)
+|+++|+|+++
T Consensus 328 ~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~ 407 (686)
T PLN02908 328 MDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLAD 407 (686)
T ss_pred HHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEE
Confidence 78899999999
Q ss_pred eccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCCCccCCChhhHHHHH
Q 007503 323 FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAE 402 (601)
Q Consensus 323 vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~~~lG~~~~~~~~~ 402 (601)
+|.+||+|.+|.+.||+|+|||+|+|+|+||+++++++|+..+++++.++|+.|||+|++.+|+||++++|+.+.|+.++
T Consensus 408 ~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae 487 (686)
T PLN02908 408 FGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAE 487 (686)
T ss_pred eeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCC-cccceEEeccccc
Q 007503 403 AALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAK-TERPVMIHRAILG 481 (601)
Q Consensus 403 ~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~-~~~P~~i~~ai~G 481 (601)
..|.++|++.|..|.+++|+++|||||+|+.+.|++++.|+|+|+|+||++|.+|+|+|||++ +. ..+|+|||+||+|
T Consensus 488 ~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~-~~~~~~pv~ihrai~G 566 (686)
T PLN02908 488 AALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAED-EAKIERPVMIHRAILG 566 (686)
T ss_pred HHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCC-CCcCCCCEEEEeCceE
Confidence 999999999999999999999999999999999999999999999999999999999999977 54 5799999999999
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEE
Q 007503 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVV 561 (601)
Q Consensus 482 GveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivv 561 (601)
|+||++++|.|+++|.||+|++|.||+|+|++++..++|.+|++.||++|++|++|.++.+++||+++|++.|+||++||
T Consensus 567 siERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~viiv 646 (686)
T PLN02908 567 SVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVV 646 (686)
T ss_pred hHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhcC
Q 007503 562 GEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 601 (601)
Q Consensus 562 G~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~~ 601 (601)
|++|+++|+|+||+|++++|..++++++++.++++.++|.
T Consensus 647 G~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~~~ 686 (686)
T PLN02908 647 GEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAEFK 686 (686)
T ss_pred CchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999988763
No 2
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-101 Score=880.00 Aligned_cols=515 Identities=44% Similarity=0.816 Sum_probs=493.6
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHH
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHI 161 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hl 161 (601)
.+|+|+++||++.+++. +||+++||+.+++.+..++|+|+|||++|||++|++.||+|+|+++++++|.++||||++||
T Consensus 4 ~mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hl 82 (639)
T PRK12444 4 QMIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEGVEIARHSAAHI 82 (639)
T ss_pred CCeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCChHHHHHHHHHHHHH
Confidence 45999999999999888 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhc--Chh
Q 007503 162 LGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNF 236 (601)
Q Consensus 162 L~~A~~~~fg-~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~--~~~ 236 (601)
|+.|++++|+ ..+.++|+++ +|||||+.. +.++|++|+.+||++|+++| |+||++.+++++||+++|++ +++
T Consensus 83 L~~A~~~~~~~~~~~i~~~~~--~g~y~d~~~-~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~ 159 (639)
T PRK12444 83 LAQAVKRLYGDVNLGVGPVIE--NGFYYDMDL-PSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRL 159 (639)
T ss_pred HHHHHHHHcCCcEEEeCCcCC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCch
Confidence 9999999995 5689999998 999999986 46799999999999999999 99999999999999999997 457
Q ss_pred hhhhcccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhhhh-----
Q 007503 237 KVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH----- 311 (601)
Q Consensus 237 K~~li~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~----- 311 (601)
|++|++..+....|++|+||+++|+|+||||||||+|+.|+|+++++|||+++++++.+|||||++||++++|.+
T Consensus 160 K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~~ 239 (639)
T PRK12444 160 KLELLEAIPSGESITLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFV 239 (639)
T ss_pred HHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCCHHHHHHHHHHH
Confidence 999999875456799999999999999999999999999999999999999999999999999999999999854
Q ss_pred --------------------------------------------------------------------------------
Q 007503 312 -------------------------------------------------------------------------------- 311 (601)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (601)
T Consensus 240 ~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~e 319 (639)
T PRK12444 240 EEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDN 319 (639)
T ss_pred HHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhh
Confidence
Q ss_pred ------------------------------hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHH
Q 007503 312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (601)
Q Consensus 312 ------------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~E 361 (601)
+|+++|+|++++|.+||+|.+|.+.||+|+|||+|+|+|+||+++++++|
T Consensus 320 my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e 399 (639)
T PRK12444 320 MYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDE 399 (639)
T ss_pred cCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHH
Confidence 78899999999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhh
Q 007503 362 VRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (601)
Q Consensus 362 i~~~i~~~~~~l~~lG~~~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~ 441 (601)
+..++.++.++|+.||++|.+.+|+||+|++|+.++|+.++..|.++|+..|.+|..|+|+|+||||++++.+.|..++.
T Consensus 400 ~~~~~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~ 479 (639)
T PRK12444 400 IKSVMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRS 479 (639)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCC-CcHHHH
Q 007503 442 FQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE-KSQPYA 520 (601)
Q Consensus 442 ~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~-~~~~~A 520 (601)
|+|+|+++||++|.+|+|.|.+.+ |+..+|+|+|+|++||+||++++|.|++++.||.|++|.||+|+|+++ +..++|
T Consensus 480 ~~~~t~~~d~~~~~~f~l~~~~~~-g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a 558 (639)
T PRK12444 480 HQCGTIQLDFQMPEKFDLNYIDEK-NEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYA 558 (639)
T ss_pred hcccceeeecccccccceEEECCC-CCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHH
Confidence 999999999999999999999887 778899999999999999999999999888999999999999999998 689999
Q ss_pred HHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 521 LQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 521 ~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
.+|++.||++|++|++|.++.+++||+++|++.|+||++|||++|.++|+|+||+|++++|..++++++++.+.+.+++|
T Consensus 559 ~~la~~LR~~Gi~veid~~~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~~~ 638 (639)
T PRK12444 559 DEVADKLAQAGIRVERDERDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIKNR 638 (639)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 007503 601 Q 601 (601)
Q Consensus 601 ~ 601 (601)
+
T Consensus 639 ~ 639 (639)
T PRK12444 639 K 639 (639)
T ss_pred C
Confidence 4
No 3
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-104 Score=815.95 Aligned_cols=439 Identities=64% Similarity=1.128 Sum_probs=420.2
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHH
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILG 163 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hlL~ 163 (601)
+.| ||||+++++.+|+|||+|||.. |+++++.+++|+|||++|||++|+++|| +++++|+|++|+++||||+||+||
T Consensus 2 ~~~-Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vfwhssahvlg 78 (560)
T KOG1637|consen 2 IIV-LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVFWHSSAHVLG 78 (560)
T ss_pred eee-cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcccceeeeehhhhHhh
Confidence 444 9999999999999999999999 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhhcChhhhhhccc
Q 007503 164 QAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND 243 (601)
Q Consensus 164 ~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii~~pi~r~~v~~eeA~~~F~~~~~K~~li~~ 243 (601)
+|+++.||++||+||+++ +|||||+ + + .++.+|++.||.
T Consensus 79 ~a~e~~~g~~lc~Gpp~~--~gf~yd~-~-~-~i~~~d~~~~e~------------------------------------ 117 (560)
T KOG1637|consen 79 EALEQEYGAHLCIGPPIE--EGFYYDM-L-D-EISSNDFPSIEA------------------------------------ 117 (560)
T ss_pred HHHHHhcCeeEeeCCCCc--Cceehhh-h-c-cccccccccccc------------------------------------
Confidence 999999999999999999 9999999 5 3 377777766553
Q ss_pred CCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhhhh------------
Q 007503 244 LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------------ 311 (601)
Q Consensus 244 ~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~------------ 311 (601)
|||++||.||+|+++++++.||++. +||++++|++
T Consensus 118 ---------------------phi~~tg~ika~k~~~nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~rd 164 (560)
T KOG1637|consen 118 ---------------------PHIRHTGKIKAFKILKNSSAYWEGD------------SFPDPKQLKEWEKFQEEAKKRD 164 (560)
T ss_pred ---------------------ccccccceeeeeeeeccchhhhccc------------cCCCHHHHHHHHhhchhhhhhh
Confidence 9999999999999999999999986 7888888754
Q ss_pred --------------------------------------------------------------------------------
Q 007503 312 -------------------------------------------------------------------------------- 311 (601)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (601)
T Consensus 165 HRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~e 244 (560)
T KOG1637|consen 165 HRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVE 244 (560)
T ss_pred hhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeec
Confidence
Q ss_pred -----------------------hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHH
Q 007503 312 -----------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEF 368 (601)
Q Consensus 312 -----------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~ 368 (601)
|||++|+|++.+|.+||+|.||+++||+|+|+|+|+|+||||+++|+.+||++|++|
T Consensus 245 ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~f 324 (560)
T KOG1637|consen 245 KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDF 324 (560)
T ss_pred hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcEEEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee
Q 007503 369 IDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ 448 (601)
Q Consensus 369 ~~~~l~~lG~~~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ 448 (601)
+..+|..|||.|++.|||||++++|+.++|++|+..|+++|+.+|.+|.+|+|||||||||||+.+.|++++.+||+|||
T Consensus 325 l~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQ 404 (560)
T KOG1637|consen 325 LDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQ 404 (560)
T ss_pred HHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHH
Q 007503 449 LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIY 528 (601)
Q Consensus 449 ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr 528 (601)
|||++|++|+|.|.+.+ |++.+|||||+||+|++||++++|+|+++|+||+|+||+|+.|||+++....||.+|..+|+
T Consensus 405 LDFqLP~rFdL~y~~~~-g~~erPVmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~ 483 (560)
T KOG1637|consen 405 LDFQLPIRFDLEYETED-GDLERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLE 483 (560)
T ss_pred ecccChhhcCceeeccc-ccccchhhHHHHHhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHH
Confidence 99999999999999988 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECC---CCceecccHHHHHHHHHHHHHhc
Q 007503 529 RAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD---QGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 529 ~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~---~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
.+|+.+++|..+.+++|+++.|+..+++|++|||++|++.++|+||.|+ +..+.+++++++.+.+.++.+++
T Consensus 484 ~a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l~~~~ 558 (560)
T KOG1637|consen 484 EAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKELKSEY 558 (560)
T ss_pred hhhceeecCCccchHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHhHhhc
Confidence 9999999999999999999999999999999999999999999999985 44567899999999999887654
No 4
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-95 Score=831.37 Aligned_cols=513 Identities=49% Similarity=0.866 Sum_probs=484.7
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHH
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILG 163 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hlL~ 163 (601)
|+|+++||+.++++. ||||.|+|+.++......+|+|+|||++|||+++++.||+|+|+++++++|+++||||++|||+
T Consensus 2 ~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~ 80 (638)
T PRK00413 2 IKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLLA 80 (638)
T ss_pred cEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccchhhHHHHhhhHHHHHH
Confidence 789999999888888 8999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhc--Chhhh
Q 007503 164 QAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFKV 238 (601)
Q Consensus 164 ~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~--~~~K~ 238 (601)
.|++++| ++.+.++|+++ +|||||+.. +.++|++|+++||++|+++| |+||++.+++++||.++|++ +++|+
T Consensus 81 ~A~~~~~~~~~~~~~~~~~--~g~y~d~~~-~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~ 157 (638)
T PRK00413 81 QAVKRLYPDAKLTIGPVIE--NGFYYDFDR-ERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKV 157 (638)
T ss_pred HHHHHHcCCceEEECCccC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHH
Confidence 9999999 67899999998 999999986 56899999999999999999 99999999999999999998 56799
Q ss_pred hhcccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhhhh-------
Q 007503 239 EIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------- 311 (601)
Q Consensus 239 ~li~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~------- 311 (601)
+|+++++....|++|+||+|+|+|+||||||||+|+.|+|.++++|||+++..++.++||||++||++++|.+
T Consensus 158 ~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e 237 (638)
T PRK00413 158 ELIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEE 237 (638)
T ss_pred HHhhcCCCCCeEEEEEECCEEEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHHH
Confidence 9999875555899999999999999999999999999999999999999999999999999999999998853
Q ss_pred --------------------------------------------------------------------------------
Q 007503 312 -------------------------------------------------------------------------------- 311 (601)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (601)
T Consensus 238 ~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my 317 (638)
T PRK00413 238 AKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMF 317 (638)
T ss_pred hccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccc
Confidence
Q ss_pred -----------------------------hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHH
Q 007503 312 -----------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEV 362 (601)
Q Consensus 312 -----------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei 362 (601)
+|+++|+|++++|.+||+|.++.+.|++|+|||+|+|+|+||+++++.+|+
T Consensus 318 ~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~ 397 (638)
T PRK00413 318 PTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEV 397 (638)
T ss_pred eeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999865555
Q ss_pred HHHHHHHHHHHHHhCcE-EEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhh
Q 007503 363 RGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (601)
Q Consensus 363 ~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~ 441 (601)
..++.++.++|+.||++ |++++|+|+.+.+|+.++|+.+++.|+++|++.|.+++.+++.++++||+++..+.+++++.
T Consensus 398 ~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (638)
T PRK00413 398 KKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGRE 477 (638)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCe
Confidence 55999999999999996 99999999988999999999999999999999999999999999999999998889999999
Q ss_pred hhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHH
Q 007503 442 FQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYAL 521 (601)
Q Consensus 442 ~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~ 521 (601)
+++.|+++||+++.+||+.|.+.. |+...|+|||+|++||+||++++|.|+++|.||.|++|.||+|+|++++..++|.
T Consensus 478 ~~l~~~~~d~~~~~~~dl~Yt~~~-~~~~~p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~ 556 (638)
T PRK00413 478 WQCGTIQLDFNLPERFDLTYVGED-GEKHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAK 556 (638)
T ss_pred EEeccEeecccChhhcCCEEECCC-CCccCcEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHH
Confidence 999999999999999988886555 6667899999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhcC
Q 007503 522 QVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 601 (601)
Q Consensus 522 ~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~~ 601 (601)
+|++.||++|++|++|+++.+++||+++|++.|+||++|||++|+++|+|+||+|++++|..++++++++.++++.++|.
T Consensus 557 ~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~~~ 636 (638)
T PRK00413 557 EVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASRS 636 (638)
T ss_pred HHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998873
No 5
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-92 Score=770.18 Aligned_cols=463 Identities=47% Similarity=0.823 Sum_probs=444.6
Q ss_pred eEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCC
Q 007503 118 ALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGL 197 (601)
Q Consensus 118 ~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~ 197 (601)
++++++|| .||+.+ ..++..++ +|..+.|||+||||+.|++++|.. +++||.++ +|||||++. +.++
T Consensus 2 ~~~~~~~~-~~~~~~-------~~~~~~~~-~~~~~~rhs~ah~l~~av~~l~p~-~~~gp~ie--~gfyyd~~~-~~~~ 68 (589)
T COG0441 2 ALAIHVDG-ELDLKD-------EIITAEDE-EGLEIIRHSCAHVLAQAVKRLYPD-VTIGPVIE--EGFYYDFDV-KEPI 68 (589)
T ss_pred ceEEEccc-ceeccc-------cccCccCc-cchhhhhhHHHHHHHHHHHHhCCC-ccccCccc--ceeEEeecc-CCCC
Confidence 57889999 999887 33455555 999999999999999999999955 99999999 999999997 5569
Q ss_pred CHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcce
Q 007503 198 NPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (601)
Q Consensus 198 t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~ 275 (601)
|++|+.+||++|++++ ++||++..+++|+|++.|+ +||+++|+.++ ..+++|+.|+|.|+|.|||+||||.| +
T Consensus 69 ~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t~~i-~ 143 (589)
T COG0441 69 TPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI-A 143 (589)
T ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcCC--CCceeEecCccccccCCCCCCccceE-E
Confidence 9999999999999999 9999999999999999999 99999999984 78999999999999999999999999 9
Q ss_pred EEEeeeccceeccCCCCCCcceeeccccccchhhhh--------------------------------------------
Q 007503 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-------------------------------------------- 311 (601)
Q Consensus 276 f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~-------------------------------------------- 311 (601)
|++++.+++||+++++++++|||||++|++++.|.+
T Consensus 144 fkl~~~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir 223 (589)
T COG0441 144 FKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIR 223 (589)
T ss_pred EEEEEecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHH
Confidence 999999999999999999999999999999999853
Q ss_pred ------------------------------------------------------------------------hhccCcee
Q 007503 312 ------------------------------------------------------------------------AFAELPLR 319 (601)
Q Consensus 312 ------------------------------------------------------------------------s~relplr 319 (601)
|||++|+|
T Consensus 224 ~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r 303 (589)
T COG0441 224 NLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLR 303 (589)
T ss_pred HHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchh
Confidence 99999999
Q ss_pred eeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccCCChhhH
Q 007503 320 LADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATW 398 (601)
Q Consensus 320 ~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG~~~~~ 398 (601)
++.+|.+||+|.+|.+.||.|+|.|+|+|+||||+.+|+..|+.+++.++..+|+.|||+ |++++|+|| +++|+.+.|
T Consensus 304 ~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ig~d~~W 382 (589)
T COG0441 304 LAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMW 382 (589)
T ss_pred hhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCC-cccCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999998 999999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEecc
Q 007503 399 EKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRA 478 (601)
Q Consensus 399 ~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~a 478 (601)
+.++..|+++|+..+.+|..+||++||||||+++.+.|++++.|||+|+|+||++|++|++.|.+.+ |...+|+|||+|
T Consensus 383 ~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d-~~~~~PvmiHra 461 (589)
T COG0441 383 DKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED-GEKKRPVIIHRA 461 (589)
T ss_pred HHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCC-CCccCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 778999999999
Q ss_pred ccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEE
Q 007503 479 ILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFI 558 (601)
Q Consensus 479 i~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~i 558 (601)
++|++||++++|+|+++|.||.|++|.||.|+|++++..+||.++++.|+++|++|++|+++.++++|+|.|...++||+
T Consensus 462 i~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyi 541 (589)
T COG0441 462 ILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYV 541 (589)
T ss_pred cchhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 559 LVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 559 ivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
+|||++|+++++|++|.+.++++..++++++++.+++..+.|
T Consensus 542 iVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~ 583 (589)
T COG0441 542 IVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGR 583 (589)
T ss_pred EEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999988765
No 6
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=5.1e-88 Score=760.73 Aligned_cols=457 Identities=40% Similarity=0.755 Sum_probs=438.3
Q ss_pred CCCeEEeeCCChhHHHHHHHHHHHHHHHHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--
Q 007503 137 DCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA-- 213 (601)
Q Consensus 137 d~~le~l~~~~~eG~~vy~hS~~hlL~~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii-- 213 (601)
..+|+++++++.+|..++|||++|||++|++++| +..+.+||+++ +||||||+. .++|++|+++||++|+++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~--~g~y~D~~~--~~lt~edl~~IEk~m~~iI~~ 104 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIE--NGFYYDFDM--EPLTDKDLKRIKKEMDRIISR 104 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccC--CCEEEEecC--CCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999 57899999999 999999985 4899999999999999999
Q ss_pred CCCeEEEEeCHHHHHHhhhc--ChhhhhhcccCCCCCcEEEEEeCC-eeeeccCCCCCCCCCc--ceEEEeeeccceecc
Q 007503 214 KQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFV--KGFGCLKASSAYWRG 288 (601)
Q Consensus 214 ~~pi~r~~v~~eeA~~~F~~--~~~K~~li~~~~~~~~v~vy~~g~-~~D~c~Gphvp~Tg~i--~~f~l~~~~~g~~l~ 288 (601)
|+||++.+++++||+++|.. +++|.+|++.. +.+.|++|+||+ ++|+|+||||||||+| ++|+|++.++.||++
T Consensus 105 n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~-~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg 183 (614)
T PLN02837 105 NLPLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRG 183 (614)
T ss_pred CCCEEEEEecHHHHHHHHHHcCCchhHHHhccC-CCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhcc
Confidence 99999999999999999985 56899999876 457899999997 8999999999999999 999999999999999
Q ss_pred CCCCCCcceeeccccccchhhhh---------------------------------------------------------
Q 007503 289 NKDRESLQRVYGISYPDKKRLKH--------------------------------------------------------- 311 (601)
Q Consensus 289 ~~~~~~l~ri~g~~fp~~~~l~~--------------------------------------------------------- 311 (601)
+.++.++|||||++||++++|.+
T Consensus 184 ~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~ 263 (614)
T PLN02837 184 DEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFE 263 (614)
T ss_pred cccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999964
Q ss_pred ------------------------------------------------------------hhccCceeeeeecccccccc
Q 007503 312 ------------------------------------------------------------AFAELPLRLADFGVLHRNEA 331 (601)
Q Consensus 312 ------------------------------------------------------------s~relplr~~~vg~l~R~e~ 331 (601)
|||++|++++++|.+||+|.
T Consensus 264 ~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~ 343 (614)
T PLN02837 264 HGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYEL 343 (614)
T ss_pred CCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCC
Confidence 99999999999999999999
Q ss_pred CCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccCCChhhHHHHHHHHHHHHH
Q 007503 332 SGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALN 410 (601)
Q Consensus 332 ~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~ 410 (601)
+|.+.||.|+|||+|.|+|+||++++++.|+..++.++.++|+.|||+ +.+.++++|++++|+++.|+.++..|+++|+
T Consensus 344 ~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~ 423 (614)
T PLN02837 344 SGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALD 423 (614)
T ss_pred CCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHH
Confidence 998999999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHH
Q 007503 411 EFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490 (601)
Q Consensus 411 ~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL 490 (601)
..|+.|..++|++||||||+|..+.|++|+.|||+|+|+||++|.+|+|.|.+.+ |...+|+|||+|++||+||++++|
T Consensus 424 ~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d-~~~~~pv~ih~~~~G~~eRlia~L 502 (614)
T PLN02837 424 DKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSN-SEKKRPIMIHRAILGSLERFFGVL 502 (614)
T ss_pred HcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcCcEEECCC-CCccCCEEEEcCCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888 678899999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCe
Q 007503 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQ 570 (601)
Q Consensus 491 ~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~ 570 (601)
+|+++|.||+|++|.||+|+|++++..++|.+|++.||++|++|+++ .+.+++||+++|++.|+||+||||++|.++|+
T Consensus 503 ie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~-~~~slgkkir~A~~~gip~~IiIG~~E~e~~~ 581 (614)
T PLN02837 503 IEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVC-HGERLPKLIRNAETQKIPLMAVVGPKEVETRT 581 (614)
T ss_pred HHHcCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEe-CCCCHHHHHHHHHHcCCCEEEEEcchhhhcCE
Confidence 99999999999999999999999989999999999999999999995 57899999999999999999999999999999
Q ss_pred EEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 571 VSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 571 V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
|+||+|+++++..++++++++.+.+..++|
T Consensus 582 VtVr~r~~geq~~v~~~el~~~l~~~~~~~ 611 (614)
T PLN02837 582 LTVRSRHGGELGTMPVDDFINRIQLAVENR 611 (614)
T ss_pred EEEEECCCCceeEeeHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998876
No 7
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.6e-87 Score=751.24 Aligned_cols=451 Identities=47% Similarity=0.865 Sum_probs=428.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEe
Q 007503 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEV 222 (601)
Q Consensus 146 ~~~eG~~vy~hS~~hlL~~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v 222 (601)
++.+|.++||||++|||+.|++++| ++.+.++|+++ +||||||.. +.++|++|+.+||++|+++| |+||++..+
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~--~g~~~d~~~-~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v 77 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIE--DGFYYDFDV-PEPFTPEDLKKIEKKMKKIIKRGLPFEREEV 77 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcC--CeEEEEeeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 5789999999999999999999999 57899999998 999999986 46799999999999999999 999999999
Q ss_pred CHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccc
Q 007503 223 TRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGIS 302 (601)
Q Consensus 223 ~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~ 302 (601)
+++||.++|+++++|.+|++..+ .+.|++|+||+|+|+|+||||||||+|+.|+|+++++|||+++++++.+|||||++
T Consensus 78 ~~eeA~~~f~~~~~k~~l~~~~~-~~~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~ 156 (575)
T PRK12305 78 SREEAREEFANEPYKLELIDDIP-EEGITIYDNGDFEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTA 156 (575)
T ss_pred cHHHHHHhCCcChhHHHhhhhcC-CCeEEEEEECCEEEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEe
Confidence 99999999999999999999874 45899999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhh-----------------------------------------------------------------------
Q 007503 303 YPDKKRLKH----------------------------------------------------------------------- 311 (601)
Q Consensus 303 fp~~~~l~~----------------------------------------------------------------------- 311 (601)
||++++|.+
T Consensus 157 ~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~ 236 (575)
T PRK12305 157 WETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236 (575)
T ss_pred cCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 999999954
Q ss_pred ----------------------------------------------hhccCceeeeeeccccccccCCCCCCceeeeeee
Q 007503 312 ----------------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ 345 (601)
Q Consensus 312 ----------------------------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~ 345 (601)
+|+++|+|++++|.+||+|.++.+.|++|+|||+
T Consensus 237 ~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~ 316 (575)
T PRK12305 237 DLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFT 316 (575)
T ss_pred HHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeE
Confidence 6778999999999999999999999999999999
Q ss_pred ecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC-CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCC
Q 007503 346 QDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP-EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDG 423 (601)
Q Consensus 346 Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~-~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~ 423 (601)
|+|+|+||+++++..|+..++.++.++|+.||++ +++.+|+|+ .+++|+.+.|+.+++.++++|+..|++|..+++++
T Consensus 317 q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 396 (575)
T PRK12305 317 QDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGA 396 (575)
T ss_pred EcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCc
Confidence 9999999999985555556999999999999998 999999998 78899999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCC
Q 007503 424 AFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLS 503 (601)
Q Consensus 424 af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~ls 503 (601)
+||+|++++.+.|++++.|+++|+++||++|.+||+.|.+.+ |+...|+|||+|++||+||++++|.|+++|.||.|++
T Consensus 397 ~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~-~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~ 475 (575)
T PRK12305 397 AFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAED-GKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLA 475 (575)
T ss_pred ccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCC-CCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCC
Confidence 999999998899999999999999999999999999997766 6678999999999999999999999998899999999
Q ss_pred CceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceec
Q 007503 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSN 583 (601)
Q Consensus 504 p~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~ 583 (601)
|.||+|+|++++..++|.+|++.||++|++|++|+++.+++|||++|++.|+||+||||++|+++|+|+||+|++++|..
T Consensus 476 p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~ 555 (575)
T PRK12305 476 PVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNG 555 (575)
T ss_pred CccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcC
Q 007503 584 MSIEDLLKHFKEKLEAFQ 601 (601)
Q Consensus 584 v~l~el~~~l~~~~~~~~ 601 (601)
++++++++.+++++++|.
T Consensus 556 v~~~~l~~~l~~~~~~~~ 573 (575)
T PRK12305 556 MPLDEFIELIKEKIAERE 573 (575)
T ss_pred eeHHHHHHHHHHHHhccc
Confidence 999999999999988763
No 8
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=1.4e-78 Score=683.16 Aligned_cols=437 Identities=48% Similarity=0.874 Sum_probs=412.8
Q ss_pred HHHHHHHHHHHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhh
Q 007503 155 WHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMF 231 (601)
Q Consensus 155 ~hS~~hlL~~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F 231 (601)
|||++|||+.|++++| +..+.++++++ +||||||.. +.++|++++.+||++|+++| |+||++..+++++|.++|
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~--~g~~~df~~-~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f 77 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVE--DGFYYDFEL-DRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAF 77 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcC--CCceecccC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHH
Confidence 8999999999999999 56799999998 999999975 56899999999999999999 999999999999999999
Q ss_pred h-cChhhhhhcccCCCCCcEEEEEeCC-eeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhh
Q 007503 232 S-DNNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRL 309 (601)
Q Consensus 232 ~-~~~~K~~li~~~~~~~~v~vy~~g~-~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l 309 (601)
+ .+++|.+|+++++....|++|+||+ |+|+|+||||||||+|+.|+|.++++|||++++++..+|||||++||+++.|
T Consensus 78 ~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l 157 (563)
T TIGR00418 78 KVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQL 157 (563)
T ss_pred hccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCHHHH
Confidence 8 5568999999864467899999999 9999999999999999999999999999999999999999999999999998
Q ss_pred hh------------------------------------------------------------------------------
Q 007503 310 KH------------------------------------------------------------------------------ 311 (601)
Q Consensus 310 ~~------------------------------------------------------------------------------ 311 (601)
.+
T Consensus 158 ~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg 237 (563)
T TIGR00418 158 AAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISG 237 (563)
T ss_pred HHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcC
Confidence 54
Q ss_pred ---------------------------------------hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEE
Q 007503 312 ---------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF 352 (601)
Q Consensus 312 ---------------------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eif 352 (601)
+|+++|+|++++|.+||+|.+|.+.||+|+|||+|.|+|+|
T Consensus 238 ~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~ 317 (563)
T TIGR00418 238 HWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIF 317 (563)
T ss_pred CcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEE
Confidence 67789999999999999999998999999999999999999
Q ss_pred ecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccC-CCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccch
Q 007503 353 CRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430 (601)
Q Consensus 353 g~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r-~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki 430 (601)
|.++++++|+..++.++.++|+.||++ +.+.++++ |.+++|+...|+.+...|.++|+..|++|+.+++.|++|+|++
T Consensus 318 ~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~ 397 (563)
T TIGR00418 318 CTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKI 397 (563)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceE
Confidence 997669999999999999999999999 88999988 5578999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEE
Q 007503 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVC 510 (601)
Q Consensus 431 ~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vi 510 (601)
++.+.|++|+.||++|+|+|+..+.+||+.|.... |+...|+|+|.+++||+||++++|.|++++.||.|++|.||+|+
T Consensus 398 ~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~-g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi 476 (563)
T TIGR00418 398 DFAFKDALGREWQCATVQLDFELPERFDLTYVDED-NEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVI 476 (563)
T ss_pred EEEeecCCCCceeeceeeeccCCHhhcCCEEECCC-CCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEE
Confidence 99889999999999999999999999999998887 67889999999999999999999988877889999999999999
Q ss_pred ecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHH
Q 007503 511 PVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLL 590 (601)
Q Consensus 511 p~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~ 590 (601)
|++++...+|.+|++.||++|++|++|++++++++|+++|++.|+||++|||++|+++|+|+||+|++++|..+++++++
T Consensus 477 ~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~ 556 (563)
T TIGR00418 477 PVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFL 556 (563)
T ss_pred EccchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 007503 591 KHFKE 595 (601)
Q Consensus 591 ~~l~~ 595 (601)
+.+++
T Consensus 557 ~~i~~ 561 (563)
T TIGR00418 557 EKLRK 561 (563)
T ss_pred HHHHh
Confidence 88765
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-74 Score=636.63 Aligned_cols=369 Identities=37% Similarity=0.623 Sum_probs=352.2
Q ss_pred eCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCeeeeccC-CCCCCCCCcceEEEeeeccceeccCCCCCCcceeec
Q 007503 222 VTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRG-PHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYG 300 (601)
Q Consensus 222 v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~~D~c~G-phvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g 300 (601)
+|++||+++|++|+||.++|+ + ..++ | ||+++|+|+| |||||||.|++|+|++.++. |+.++++||||||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~-~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~---g~~~~~~l~Riyg 116 (545)
T PRK14799 46 ITLDEVKKAINENVLANVSIE---N-NQIV-Y-KGNKVSIIEDKVSISTNLNPKYFEILNISTH---HPNPNEQYVRIRG 116 (545)
T ss_pred ccHHHHHHHHhcCcceeeEee---c-CcEE-E-ccCceeecCCCCCCCCCCCcceEEEEEeccC---CCccCceeEEEEE
Confidence 578899999999999999987 2 3444 4 9999999999 99999999999999999987 8899999999999
Q ss_pred cccccchhhhh---------------------------------------------------------------------
Q 007503 301 ISYPDKKRLKH--------------------------------------------------------------------- 311 (601)
Q Consensus 301 ~~fp~~~~l~~--------------------------------------------------------------------- 311 (601)
++||++++|.+
T Consensus 117 ~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~ 196 (545)
T PRK14799 117 VAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVF 196 (545)
T ss_pred eecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccc
Confidence 99999999964
Q ss_pred -----------------------------------------------hhccCceeeeeeccccccccCCCCCCceeeeee
Q 007503 312 -----------------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRF 344 (601)
Q Consensus 312 -----------------------------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF 344 (601)
|||++|+|++++|.+||+|.+|.+.||+|+|||
T Consensus 197 ~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF 276 (545)
T PRK14799 197 KTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGF 276 (545)
T ss_pred hHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeE
Confidence 899999999999999999999999999999999
Q ss_pred eecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE---EEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCC
Q 007503 345 QQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT---YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421 (601)
Q Consensus 345 ~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~---~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g 421 (601)
+|+|+||||+++|+.+|+..+++++.++|+.|||+ |.+.+|+||++++|+.+.|++++..|+++|++.|+++..+++
T Consensus 277 ~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g 356 (545)
T PRK14799 277 VQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEK 356 (545)
T ss_pred EEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecc
Confidence 99999999999998899999999999999999995 999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCC
Q 007503 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFW 501 (601)
Q Consensus 422 ~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~ 501 (601)
+++|||||+++.+.|++++.||++|+|+||++|.+|+|.|.+.+ |...+|+|||+|++||+||++++|.|+++|.||.|
T Consensus 357 ~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~-~~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~w 435 (545)
T PRK14799 357 EGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKD-GIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW 435 (545)
T ss_pred eeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCC-CCCcccEEEEccCCCCHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999998876 66779999999999999999999999888899999
Q ss_pred CCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCce
Q 007503 502 LSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDH 581 (601)
Q Consensus 502 lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q 581 (601)
++|.||+|+|++++..++|.+|++.||++|++|++|.+++++++|+++|++.|+||++|||++|+++++|+||+|++++|
T Consensus 436 laP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq 515 (545)
T PRK14799 436 LSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEV 515 (545)
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHHHHHhc
Q 007503 582 SNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 582 ~~v~l~el~~~l~~~~~~~ 600 (601)
..++++++++.+.+.+++|
T Consensus 516 ~~v~l~eli~~l~~~i~~~ 534 (545)
T PRK14799 516 RNVKFEKFLELLITEIAQR 534 (545)
T ss_pred EEEcHHHHHHHHHHHHhhc
Confidence 9999999999999888775
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.1e-48 Score=435.84 Aligned_cols=282 Identities=30% Similarity=0.543 Sum_probs=265.6
Q ss_pred hhhccCceeeeeecc-ccccccCCCCCCceeeeeeeecCeEEEecC-chhHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGV-LHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~-l~R~e~~g~l~gliR~ReF~Q~d~eifg~~-~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
.|||++|+|++++|. +||+|.+|.+.||.|+|||+|.|+|+||.+ +++..|+..+++++.++|+.||++|.+.+++.
T Consensus 302 ~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t- 380 (613)
T PRK03991 302 ISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFT- 380 (613)
T ss_pred CchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCH-
Confidence 489999999999999 999999999999999999999999999996 78999999999999999999999998888542
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccc--cCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCC
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQI--NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDE 466 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~--~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~ 466 (601)
.+.|+.++..|+++++..|.++.+ .+|+++|||||+++.+.|++||.||++|+|+|++++++||+.|.+.+
T Consensus 381 ------~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~- 453 (613)
T PRK03991 381 ------EDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDEN- 453 (613)
T ss_pred ------HHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCC-
Confidence 356888889999999999999866 68899999999999999999999999999999999999999999887
Q ss_pred CCcccceEEeccccccHHHHHHHHHHhcCCC--------CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeC
Q 007503 467 AKTERPVMIHRAILGSVERMFAILLEHYKGK--------WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT 538 (601)
Q Consensus 467 g~~~~P~~i~~ai~GGveRli~iL~E~~~g~--------~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~ 538 (601)
|....|+|+|++++||+||++++|+|++++. ||.|++|.||+|+|++++..++|.+|++.||++|++|++|+
T Consensus 454 g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lDd 533 (613)
T PRK03991 454 GEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDD 533 (613)
T ss_pred CCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6667899999999999999999999998776 99999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 539 TDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 539 ~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
++.++++|+++|++.|+||+||||++|+++|+|+||+|+++++..++++++++.+.++++.+
T Consensus 534 r~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~~~ 595 (613)
T PRK03991 534 RDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETKGY 595 (613)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999887654
No 11
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-40 Score=359.77 Aligned_cols=272 Identities=20% Similarity=0.303 Sum_probs=233.1
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
.||+++|++++++|.+||+|.++. .||+|+|||+|.|+|+||.+.. ++.|+..++.++.++|+.|||+ +.+.+++++
T Consensus 123 ~syrdLPlrl~q~~~~fR~E~~~~-~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~ 201 (439)
T PRK12325 123 KSYKDLPLNLYHIQWKFRDEIRPR-FGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGP 201 (439)
T ss_pred hhchhhchHheEecCEecCCCCCC-CCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCC
Confidence 489999999999999999998874 8999999999999999998854 8889999999999999999999 788888876
Q ss_pred Cc-----------cC-----------------CChhhHHHHHHHHHHHHHHcCCCc---cccCCCCccc-ccchhhhHHH
Q 007503 389 EK-----------YL-----------------GDLATWEKAEAALTEALNEFGKPW---QINEGDGAFY-GPKIDISVSD 436 (601)
Q Consensus 389 ~~-----------~l-----------------G~~~~~~~~~~~L~~~L~~~~~~~---~~~~g~~af~-gpki~~~~~d 436 (601)
.+ .+ |....|+. ..|+++|+..+..+ ...++.++|+ +|+++....+
T Consensus 202 ~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (439)
T PRK12325 202 IGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSAR 279 (439)
T ss_pred CCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHHHHhhhcccccchhhhhccCCCCcCCCcceeecc
Confidence 21 12 33345665 78888888766544 3345667888 9998765555
Q ss_pred --HHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccc-cHHHHHHHHHHhc----CCCCCCCCCCceEEE
Q 007503 437 --ALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEHY----KGKWPFWLSPRQAIV 509 (601)
Q Consensus 437 --~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~G-GveRli~iL~E~~----~g~~p~~lsp~qv~V 509 (601)
++|+.|+++|. ++.+||+.|.+.+ |. ++++|++++| |+||++++|+|++ ++.||.|++|.||+|
T Consensus 280 ~ievg~~~~lg~~-----ys~~f~~~y~d~~-g~---~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~I 350 (439)
T PRK12325 280 GIEVGHIFYFGTK-----YSEPMNAKVQGPD-GK---EVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGI 350 (439)
T ss_pred eEEEEeeecCccc-----ccHhcCCEEECCC-CC---EEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEE
Confidence 56777777765 3679999998876 43 2447888888 8999999999997 679999999999999
Q ss_pred Eec---CCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccH
Q 007503 510 CPV---SEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSI 586 (601)
Q Consensus 510 ip~---~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l 586 (601)
+|+ +++..++|.+|++.||++|++|++|+++.++++||++|++.|+||+||||++|+++++|+||+|+++++..+++
T Consensus 351 ipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~ 430 (439)
T PRK12325 351 INLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSV 430 (439)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCceEEEEH
Confidence 999 56678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007503 587 EDLLKHFK 594 (601)
Q Consensus 587 ~el~~~l~ 594 (601)
+++++.++
T Consensus 431 ~el~~~i~ 438 (439)
T PRK12325 431 EAAINRLT 438 (439)
T ss_pred HHHHHHHh
Confidence 99988764
No 12
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.1e-40 Score=342.20 Aligned_cols=192 Identities=64% Similarity=1.160 Sum_probs=186.2
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCc
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK 390 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~ 390 (601)
+|+++|+|++++|.+||+|.++.++||+|+|||+|.|+|+||+++++++|+..+++++.++|+.||++ +.+.+++++++
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~~~ 185 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRPEK 185 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcChhH
Confidence 68899999999999999999998999999999999999999999998888888999999999999998 99999999988
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcc
Q 007503 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE 470 (601)
Q Consensus 391 ~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~ 470 (601)
+.|+.+.|+.+++.+++++...|++|+.+||++||||||||+.+.|++||.|||+|+||||++|.+|||.|.+.+ |...
T Consensus 186 ~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~-~~~~ 264 (298)
T cd00771 186 FIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCSTIQLDFNLPERFDLTYIGED-GEKK 264 (298)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecceeEeeccChhhcCCEEEccC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 7788
Q ss_pred cceEEeccccccHHHHHHHHHHhcCCCCCCCCCC
Q 007503 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSP 504 (601)
Q Consensus 471 ~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp 504 (601)
+|+|||+|++|++||+|++|+|+++|+||+|+||
T Consensus 265 ~pv~ih~~~~Gs~eR~i~~l~e~~~g~~P~wlaP 298 (298)
T cd00771 265 RPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298 (298)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhhCCCCCCccCc
Confidence 9999999999999999999999999999999998
No 13
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.5e-39 Score=348.49 Aligned_cols=260 Identities=23% Similarity=0.327 Sum_probs=218.6
Q ss_pred cccchhhhhhhc-cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-E
Q 007503 303 YPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-Y 380 (601)
Q Consensus 303 fp~~~~l~~s~r-elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~ 380 (601)
|+.-+...+||| +||++++++|.+||+|.++ +.||+|+|||+|+|+|+||+++++.+|+..++.++.++|..||++ +
T Consensus 171 ~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~-~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~ 249 (456)
T PRK04173 171 FVNFKNVLRTARKKLPFGIAQIGKSFRNEITP-RNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPE 249 (456)
T ss_pred HHHHHHHHHhccccCCeeeeEEchhHhCccCC-CCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 555677778999 9999999999999999998 699999999999999999999999999999999999999999998 8
Q ss_pred EEEEccCC--CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCC----
Q 007503 381 ELKLSTRP--EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLP---- 454 (601)
Q Consensus 381 ~l~ls~r~--~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~---- 454 (601)
++++++++ +...|..++|+.. ++...|..|...+|.. .+.|++|+
T Consensus 250 ~~~~s~~~~~e~~~ys~~~wd~e------~~~~~g~~~~e~~g~~-----------------------~~~dydL~~~~~ 300 (456)
T PRK04173 250 NLRFREHLPEELAHYSKATWDIE------YKFPFGRFWGELEGIA-----------------------NRTDYDLSRHSK 300 (456)
T ss_pred ceEEEecCcchhhccHHHHHhHH------HhCCCCCcEEEEeeee-----------------------ccchhhcccchh
Confidence 89999985 3567889999862 2222233343332211 12222232
Q ss_pred -cccceeEee-cCCCCcccceEEeccccccHHHH-HHHHHHhcCC------------CCCCCCCCceEEEEecCCC--cH
Q 007503 455 -DRFNLGYSA-EDEAKTERPVMIHRAILGSVERM-FAILLEHYKG------------KWPFWLSPRQAIVCPVSEK--SQ 517 (601)
Q Consensus 455 -~~~~L~Y~t-~~~g~~~~P~~i~~ai~GGveRl-i~iL~E~~~g------------~~p~~lsp~qv~Vip~~~~--~~ 517 (601)
.+|+|.|.. +.+|.+.+|+|||+|+ |+||+ +++|++++.+ .||.|++|.||+|+|++++ ..
T Consensus 301 ~s~~dl~y~~~~~~~~~~~P~vi~~si--GieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~ 378 (456)
T PRK04173 301 HSGEDLSYFDDETTGEKYIPYVIEPSA--GLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLS 378 (456)
T ss_pred hcCCCeEEEecCCCCceeeeEEEEecc--cHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHH
Confidence 268899983 3225678999999998 89995 5666777665 7999999999999999873 78
Q ss_pred HHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHH
Q 007503 518 PYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 596 (601)
Q Consensus 518 ~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~ 596 (601)
++|.+|++.||++ ++|++|.+ .++++|+++|++.|+||++|||++|+++++|+||+|++++|..++++++++.+.++
T Consensus 379 ~~A~~la~~LR~~-irVelD~~-~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 379 EKAREIYAELRKD-FNVDYDDS-GSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred HHHHHHHHHHHhc-CEEEEeCC-CCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 9999999999999 99999965 69999999999999999999999999999999999999999999999999888754
No 14
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-39 Score=342.07 Aligned_cols=266 Identities=24% Similarity=0.351 Sum_probs=214.6
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYL 392 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~l 392 (601)
..|+|++++|++||+|++|+ +|+|||||+|+|+||++++ +|+| +|.++.++|+.||++ |+|+|||+
T Consensus 99 ~~p~k~yy~g~vfRyErPQ~----GR~RqF~Q~g~E~iG~~~~~~DAE---vi~l~~~~l~~lGi~~~~l~iN~~----- 166 (429)
T COG0124 99 PKPLKLYYFGPVFRYERPQK----GRYRQFYQFGVEVIGSDSPDADAE---VIALAVEILEALGIGGFTLEINSR----- 166 (429)
T ss_pred cCCeeEEEecceecCCCCCC----CCceeeEEcCeEEeCCCCcccCHH---HHHHHHHHHHHcCCCcEEEEEcCc-----
Confidence 36899999999999999999 9999999999999999999 9999 899999999999999 99999554
Q ss_pred CChhhHHHH-----HHHHHHHHHHcC----CC--------ccccC---------CCCccc--ccchhhhHHHHHhhhhhh
Q 007503 393 GDLATWEKA-----EAALTEALNEFG----KP--------WQINE---------GDGAFY--GPKIDISVSDALKRKFQC 444 (601)
Q Consensus 393 G~~~~~~~~-----~~~L~~~L~~~~----~~--------~~~~~---------g~~af~--gpki~~~~~d~l~~~~~~ 444 (601)
|..+.+-++ ...|..+++++. .. ...|| .++.++ +|++..++.++...++..
T Consensus 167 g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~~~~e~~~~~~~ 246 (429)
T COG0124 167 GILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDEESLEHLEE 246 (429)
T ss_pred ccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHhhhhccHHHHHHHHH
Confidence 555555555 666777776654 11 11222 112222 577766665555555443
Q ss_pred ccee-------eccCCCcccceeEeecC-----------------CC----------CcccceEEeccccccHHHHHHHH
Q 007503 445 ATLQ-------LDFQLPDRFNLGYSAED-----------------EA----------KTERPVMIHRAILGSVERMFAIL 490 (601)
Q Consensus 445 ~ti~-------ld~~l~~~~~L~Y~t~~-----------------~g----------~~~~P~~i~~ai~GGveRli~iL 490 (601)
+..+ ..++....+||+|||+. || +..+|+ +|+|+ |+||++.+|
T Consensus 247 v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pa-vGFai--GveRl~~~l 323 (429)
T COG0124 247 LLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPA-VGFAI--GVERLILAL 323 (429)
T ss_pred HHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCc-eeEeh--HHHHHHHHH
Confidence 3222 22344567899999986 22 245898 89999 999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCe
Q 007503 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQ 570 (601)
Q Consensus 491 ~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~ 570 (601)
.+. |......++.+|+|+++++....+|.+++++||++|+.|+++...+++++|+++|++.|++|++|+|++|.++|+
T Consensus 324 ~~~--~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~~~viiGe~E~~~g~ 401 (429)
T COG0124 324 EEE--GKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGARFAVILGEDELANGV 401 (429)
T ss_pred HHc--CCCCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHCCCCEEEEEcchHHhcCC
Confidence 765 321111467899999999988899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceecccHHHHHHHHHHHH
Q 007503 571 VSVRVRDQGDHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 571 V~vr~~~~~~q~~v~l~el~~~l~~~~ 597 (601)
|+|||+.+++|..++++++++.+....
T Consensus 402 v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 402 VTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred EEEeeCCCCccceecHHHHHHHHHhhc
Confidence 999999999999999999999887653
No 15
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=4.8e-36 Score=329.12 Aligned_cols=253 Identities=21% Similarity=0.354 Sum_probs=214.5
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeE-EEecCchhHHHHHHHHHHHHHHHH-HhCcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDEVRGVLEFIDYAYR-IFGFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~e-ifg~~~~~d~Ei~~~i~~~~~~l~-~lG~~~~l~ls~r~ 388 (601)
.||+++|++++++|.+||+|.++. .||+|+|||+|.|+| +|++.++++.|+..+++++.++|. .|||++.+...+..
T Consensus 119 ~S~rdLPlr~~q~~~vfR~E~~~~-~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ 197 (472)
T TIGR00408 119 KSYTDLPLKINQWVNVFRYETKHT-RPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEW 197 (472)
T ss_pred cChhhcCHHHhheeeeecCCCCCC-CCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCch
Confidence 488999999999999999999986 999999999999999 688888899999999999999998 99999665443322
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccceeEeecCCC
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~L~Y~t~~~g 467 (601)
+++.|...+|+ ++..+.| ++.+|++|++ |+++++.+||+.|.+.+ |
T Consensus 198 ek~~ga~~~~~------------------------------~e~~~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~-g 244 (472)
T TIGR00408 198 EKFAGAEYTWA------------------------------FETIMPD--GRTLQIATSHNLGQNFAKTFEIKFETPT-G 244 (472)
T ss_pred hhcCCccceEE------------------------------EeEEEcC--CCEEEEeeeecccccccHhcCCEEECCC-C
Confidence 33334333322 2222233 5778999988 99999999999998776 4
Q ss_pred CcccceEEeccccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEec--C----CCcHHHHHHHHHHHHHcCCEEEEe
Q 007503 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV--S----EKSQPYALQVRDHIYRAGYYVDVD 537 (601)
Q Consensus 468 ~~~~P~~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv~Vip~--~----~~~~~~A~~i~~~Lr~~Gi~v~~d 537 (601)
.+.++|++++|-.||+|++|+|+++ +.||.|++|.||+|+|+ + ++..++|.+|++.||++|++|++|
T Consensus 245 ---~~~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD 321 (472)
T TIGR00408 245 ---DKEYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHID 321 (472)
T ss_pred ---CEEeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 2445677777755999999987753 47999999999999997 3 347889999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 538 TTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 538 ~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
+++.++++|+++|++.|+||+|+||++|+++|+|+||+|++++|..++++++++.+.+++++.
T Consensus 322 ~r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~~~ 384 (472)
T TIGR00408 322 DRDNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLNNI 384 (472)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHHHH
Confidence 988899999999999999999999999999999999999999999999999999998887764
No 16
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.9e-35 Score=320.18 Aligned_cols=252 Identities=22% Similarity=0.368 Sum_probs=213.7
Q ss_pred hhhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEE-ecCchhHHHHHHHHHHHHHHH-HHhCcEEEEEEccC
Q 007503 310 KHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTR 387 (601)
Q Consensus 310 ~~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eif-g~~~~~d~Ei~~~i~~~~~~l-~~lG~~~~l~ls~r 387 (601)
..||++||++++++|.+||+|.+ .+||+|+|||+|.|+|+| ++.++++.|+..+++++.++| +.||+++.+.. +
T Consensus 124 i~SyrdLPlrl~q~~~vfR~E~~--~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~--~ 199 (477)
T PRK08661 124 IQSYRDLPLLYNQWVNVVRWETK--TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGK--K 199 (477)
T ss_pred hcchhhcCHHHhcccceeeCCCC--CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEe--c
Confidence 34899999999999999999998 579999999999999985 666679999999999999999 99999965433 3
Q ss_pred CCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccceeEeecCC
Q 007503 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDE 466 (601)
Q Consensus 388 ~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~L~Y~t~~~ 466 (601)
+ .|++ . .++.+.+.++..+.| ++.++++|++ |+..++.+||+.|.+.+
T Consensus 200 ~--------~~ek------------------f--~ga~~~~~ie~~~~d--gr~~q~gt~~~Lg~~~s~~f~i~y~d~~- 248 (477)
T PRK08661 200 T--------EWEK------------------F--AGADYTYTIEAMMPD--GKALQAGTSHYLGQNFAKAFDIKFQDKD- 248 (477)
T ss_pred C--------hHHh------------------h--CCCcceeEEEEEeCC--CCEEEEEEecccccchhHhcCCEEECCC-
Confidence 2 1221 0 123344445555544 7888999985 99999999999998776
Q ss_pred CCcccceEEeccccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEec------CCCcHHHHHHHHHHHHHcCCEEEE
Q 007503 467 AKTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV------SEKSQPYALQVRDHIYRAGYYVDV 536 (601)
Q Consensus 467 g~~~~P~~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv~Vip~------~~~~~~~A~~i~~~Lr~~Gi~v~~ 536 (601)
|.... +|++++|..+|+|++|+|+++ ..||.|++|.||+|+|+ +++..++|.+|++.||++|++|++
T Consensus 249 g~~~~---v~~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~l 325 (477)
T PRK08661 249 GKLEY---VHQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKL 325 (477)
T ss_pred CCEee---eEEecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 43332 477888877999999999774 47999999999999999 566788999999999999999999
Q ss_pred eC-CCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 537 DT-TDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 537 d~-~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
|+ ++.++++|+++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.+.+++++
T Consensus 326 D~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~~ 389 (477)
T PRK08661 326 DDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEE 389 (477)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHHH
Confidence 99 7899999999999999999999999999999999999999999999999999998887764
No 17
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-33 Score=303.41 Aligned_cols=267 Identities=14% Similarity=0.174 Sum_probs=201.9
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCc
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK 390 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~ 390 (601)
++++|+|++++|++||+++++. +|+|||+|+|+|+||.+++ +|+| +|.++.++|+.+|++ |++.|||+.
T Consensus 98 ~~~~p~R~~y~g~vfR~e~~q~----GR~Ref~Q~g~EiiG~~~~~aD~E---vi~l~~~~l~~lGl~~~~i~l~~~~-- 168 (430)
T CHL00201 98 YHSNLQRLWYSGPMFRYERPQS----GRQRQFHQLGIEFIGSIDARADTE---VIHLAMQIFNELQVKNLILDINSIG-- 168 (430)
T ss_pred ccCCCeEEEEEcceecCCCCcC----CccceeEEeceEEECCCChhhHHH---HHHHHHHHHHHcCCCceEEEECCCC--
Confidence 4568999999999999999998 8999999999999999999 9999 899999999999998 999998763
Q ss_pred cCCChhhHHHHHHHHHHHHHHcC--CC--------------ccc-cCCCCcc--cccchhhhHH----HHHhhhhh---h
Q 007503 391 YLGDLATWEKAEAALTEALNEFG--KP--------------WQI-NEGDGAF--YGPKIDISVS----DALKRKFQ---C 444 (601)
Q Consensus 391 ~lG~~~~~~~~~~~L~~~L~~~~--~~--------------~~~-~~g~~af--~gpki~~~~~----d~l~~~~~---~ 444 (601)
....+......|..++.+.. .. |.. +.++... -+|++...+. +.+.+..+ .
T Consensus 169 ---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~~~~~l~~ 245 (430)
T CHL00201 169 ---KLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYDVCTYLNL 245 (430)
T ss_pred ---chhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22223333334444443321 00 000 1111011 1233322211 12222212 1
Q ss_pred cceeeccCCCcccceeEeecC-----------------CC----------CcccceEEeccccccHHHHHHHHHHhcCCC
Q 007503 445 ATLQLDFQLPDRFNLGYSAED-----------------EA----------KTERPVMIHRAILGSVERMFAILLEHYKGK 497 (601)
Q Consensus 445 ~ti~ld~~l~~~~~L~Y~t~~-----------------~g----------~~~~P~~i~~ai~GGveRli~iL~E~~~g~ 497 (601)
..+.+.+++...+|++||||. || +.+.|+ +|+|+ |+||++.+|.+. ..
T Consensus 246 ~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~Pa-vGfa~--g~erl~~~l~~~--~~ 320 (430)
T CHL00201 246 LNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPA-VGCAI--GLERLLLIAKDN--II 320 (430)
T ss_pred cCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCe-eEEEe--cHHHHHHHHhcc--cc
Confidence 122233445566899999984 12 245788 79999 999999988653 22
Q ss_pred CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECC
Q 007503 498 WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD 577 (601)
Q Consensus 498 ~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~ 577 (601)
. +..+.+|+|+|++++...+|.+++++||++|++|++|....++++++++|++.|++|++|+|++|.++++|+|||+.
T Consensus 321 ~--~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~ 398 (430)
T CHL00201 321 L--PKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLD 398 (430)
T ss_pred C--CCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECC
Confidence 2 34667899999998889999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCceecccHHHHHHHHHHHHH
Q 007503 578 QGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 578 ~~~q~~v~l~el~~~l~~~~~ 598 (601)
+++|..++++++++.+.++.+
T Consensus 399 ~~~q~~i~~~~~~~~~~~~~~ 419 (430)
T CHL00201 399 EQVQENAQYSNFKQEISYLKK 419 (430)
T ss_pred CCCcEEEcHHHHHHHHHHHHH
Confidence 999999999999998887754
No 18
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.2e-32 Score=303.64 Aligned_cols=139 Identities=23% Similarity=0.355 Sum_probs=126.4
Q ss_pred CCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEecC---CCcHHHHHHHHH
Q 007503 453 LPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVS---EKSQPYALQVRD 525 (601)
Q Consensus 453 l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip~~---~~~~~~A~~i~~ 525 (601)
.+..|++.|.+.+ |+...+.|.+++| |++|++++|+|++ |..||.+++|.||+|+|++ ++..++|.+|++
T Consensus 416 ys~~~~~~~~~~~-g~~~~~~m~~~gI--Gv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~ 492 (565)
T PRK09194 416 YSEAMNATVLDEN-GKAQPLIMGCYGI--GVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYA 492 (565)
T ss_pred hhhccCCEEECCC-CCEEeEEEeeEec--hHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHH
Confidence 3457899998877 6666666777888 9999999999985 3489999999999999997 567889999999
Q ss_pred HHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHH
Q 007503 526 HIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 594 (601)
Q Consensus 526 ~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~ 594 (601)
.||++|++|.+|+++.++|+|+++|++.|+||+|+||++|+++|+|+||+|++++|..++++++++.+.
T Consensus 493 ~L~~~gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 493 ELQAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred HHhccCCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876
No 19
>PLN02530 histidine-tRNA ligase
Probab=99.97 E-value=1.4e-30 Score=287.58 Aligned_cols=261 Identities=21% Similarity=0.247 Sum_probs=195.8
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE---EEEEEccCCC-
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT---YELKLSTRPE- 389 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~---~~l~ls~r~~- 389 (601)
.+|+|++|+|++||+++++. +|.|||+|+|+|+||.+++ +|+| +|.++.++|+.||++ |.|+|||+..
T Consensus 162 ~~P~r~~y~g~vfR~e~~q~----gr~REf~Q~giEiiG~~~~~aDaE---vi~l~~~~l~~lgl~~~~~~i~i~~~~i~ 234 (487)
T PLN02530 162 SLPLKWFAIGQCWRYERMTR----GRRREHYQWNMDIIGVPGVEAEAE---LLAAIVTFFKRVGITSSDVGIKVSSRKVL 234 (487)
T ss_pred CCCeEEEEEcCEEcCcCCCC----CCccceEEcCeeEeCCCCcchhHH---HHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 47999999999999999998 8999999999999999998 9999 899999999999994 9999999851
Q ss_pred ----ccCCChh-hHHH-----------HHHHHHHHHHHcCCCccccCCCCcc----cccchhhh------HHHHHhhhhh
Q 007503 390 ----KYLGDLA-TWEK-----------AEAALTEALNEFGKPWQINEGDGAF----YGPKIDIS------VSDALKRKFQ 443 (601)
Q Consensus 390 ----~~lG~~~-~~~~-----------~~~~L~~~L~~~~~~~~~~~g~~af----~gpki~~~------~~d~l~~~~~ 443 (601)
..+|..+ .+.. ....+++.|...+.+......--.. ..+++... ..+.+...++
T Consensus 235 ~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~ 314 (487)
T PLN02530 235 QAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFS 314 (487)
T ss_pred HHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2233211 1111 1122333344333321100000000 00111111 2233333333
Q ss_pred hcc-------eeeccCCCcccceeEeecC----------------CCC----------cccceEEeccccccHHHHHHHH
Q 007503 444 CAT-------LQLDFQLPDRFNLGYSAED----------------EAK----------TERPVMIHRAILGSVERMFAIL 490 (601)
Q Consensus 444 ~~t-------i~ld~~l~~~~~L~Y~t~~----------------~g~----------~~~P~~i~~ai~GGveRli~iL 490 (601)
.+. +.+| +...+||+||||. ||. .+.|+ +|+|+ |++|++.+|
T Consensus 315 ~l~~~g~~~~i~~D--l~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pA-vGFa~--g~~~l~~~l 389 (487)
T PLN02530 315 LAEAYGYQDWLVFD--ASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPA-CGFGF--GDAVIVELL 389 (487)
T ss_pred HHHHcCCCccEEEe--cccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCe-eEEEE--hHHHHHHHH
Confidence 221 3334 4456889999975 221 35688 89999 999999888
Q ss_pred HHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCe
Q 007503 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQ 570 (601)
Q Consensus 491 ~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~ 570 (601)
.+. +.+|.|.+|.+|+|++++++...+|.++++.||++|++|+++..+.++++++++|++.|+++++++|++|.++++
T Consensus 390 ~~~--g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~ 467 (487)
T PLN02530 390 KEK--GLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHAERIGAKRLVLVGASEWERGM 467 (487)
T ss_pred Hhc--CCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCEEEEEchhHHhCCe
Confidence 654 678888899999999999988999999999999999999999988899999999999999999999999999999
Q ss_pred EEEEECCCCceecccHHHH
Q 007503 571 VSVRVRDQGDHSNMSIEDL 589 (601)
Q Consensus 571 V~vr~~~~~~q~~v~l~el 589 (601)
|+|||+.+++|..++++++
T Consensus 468 V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 468 VRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred EEEEECCCCcceEechHHc
Confidence 9999999999999998764
No 20
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.97 E-value=6.1e-30 Score=285.80 Aligned_cols=138 Identities=19% Similarity=0.348 Sum_probs=121.4
Q ss_pred cccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEecCC---CcHHHHHHHHHHH
Q 007503 455 DRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVSE---KSQPYALQVRDHI 527 (601)
Q Consensus 455 ~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip~~~---~~~~~A~~i~~~L 527 (601)
+.|++.|.+.+ |....+.|.+.+| |++|++++++|++ |..||.|++|+||.|+|+.. +..++|.+|++.|
T Consensus 423 ~~~~~~~~d~~-g~~~~~~mgcyGI--GvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~~a~~l~~~L 499 (568)
T TIGR00409 423 EALKATFLDEN-GKNQFMTMGCYGI--GVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSEL 499 (568)
T ss_pred HhcCCEEECCC-CCEEEEEEeCCcc--hHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHHHHHHHHHHH
Confidence 56799998877 5444344544555 9999999999976 45899999999999999863 4677899999999
Q ss_pred HHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHH
Q 007503 528 YRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 595 (601)
Q Consensus 528 r~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~ 595 (601)
.++|++|.+|+++.++|+|+++|++.|+||+|+||++++++++|+||+|+++++..++++++++.+..
T Consensus 500 ~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 500 LAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred HhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987753
No 21
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.1e-29 Score=273.91 Aligned_cols=259 Identities=24% Similarity=0.378 Sum_probs=199.7
Q ss_pred CceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccCC
Q 007503 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLG 393 (601)
Q Consensus 316 lplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG 393 (601)
+|+|++++|.+||++.++. +|.|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ +.+.+++ +|
T Consensus 97 ~p~r~~~~g~vfR~e~~~~----gr~ref~Q~g~ei~g~~~~~~d~E---~i~~~~~~l~~lg~~~~~~~l~~-----~~ 164 (412)
T PRK00037 97 QPFKLYYIGPMFRYERPQK----GRYRQFHQFGVEVIGSDSPLADAE---VIALAADILKALGLKGLKLLINS-----LG 164 (412)
T ss_pred CCeEEEEEcCccccCCCCC----CcccceEEcCeeeeCCCCcchhHH---HHHHHHHHHHHcCCCceeeeecc-----CC
Confidence 8999999999999999987 8999999999999999988 9999 799999999999998 8898844 45
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCc------------------cccCCCCccc--ccchhhhHH----HHHhhhhhhc---c
Q 007503 394 DLATWEKAEAALTEALNEFGKPW------------------QINEGDGAFY--GPKIDISVS----DALKRKFQCA---T 446 (601)
Q Consensus 394 ~~~~~~~~~~~L~~~L~~~~~~~------------------~~~~g~~af~--gpki~~~~~----d~l~~~~~~~---t 446 (601)
....+....+.|+.+|++ +.+- ..+++....+ ++++...+. +++.+..+.+ .
T Consensus 165 ~~~~~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 243 (412)
T PRK00037 165 DFEIRANYRKALVGFLEK-GLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEELKELLDALG 243 (412)
T ss_pred CHHHhHHHHHHHHHHHHh-CchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 555555556666766655 2210 0111111111 233322222 1222222211 1
Q ss_pred eeeccCCCcccceeEeecC-----------------CCC----------cccceEEeccccccHHHHHHHHHHhcCCCCC
Q 007503 447 LQLDFQLPDRFNLGYSAED-----------------EAK----------TERPVMIHRAILGSVERMFAILLEHYKGKWP 499 (601)
Q Consensus 447 i~ld~~l~~~~~L~Y~t~~-----------------~g~----------~~~P~~i~~ai~GGveRli~iL~E~~~g~~p 499 (601)
+.+-|++....+++||||. ||. ...|+ +|+|+ |+||++.+|.++. .
T Consensus 244 ~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pa-vGfs~--~le~l~~~l~~~~--~-- 316 (412)
T PRK00037 244 IPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPA-VGFAI--GVERLLLLLEELG--E-- 316 (412)
T ss_pred CCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCce-EEEEE--cHHHHHHHHHhcC--C--
Confidence 1222344455779999875 121 35687 79999 9999999998763 1
Q ss_pred CCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCC
Q 007503 500 FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQG 579 (601)
Q Consensus 500 ~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~ 579 (601)
+|.+|+|+|++++...+|.++++.||++|++|+++..+.++++++++|++.|+|++++||++|.++++|+||+++++
T Consensus 317 ---~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~ 393 (412)
T PRK00037 317 ---EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTG 393 (412)
T ss_pred ---CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEECCCC
Confidence 68899999998877889999999999999999999887899999999999999999999999999999999999999
Q ss_pred ceecccHHHHHHHHHHHH
Q 007503 580 DHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 580 ~q~~v~l~el~~~l~~~~ 597 (601)
++..++++++++.++++.
T Consensus 394 ~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 394 EQQTVPLDELVEALKELL 411 (412)
T ss_pred ceEEeeHHHHHHHHHHhh
Confidence 999999999999988764
No 22
>PLN02972 Histidyl-tRNA synthetase
Probab=99.96 E-value=5e-28 Score=272.19 Aligned_cols=270 Identities=18% Similarity=0.267 Sum_probs=193.2
Q ss_pred CceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC-ch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCC---
Q 007503 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE--- 389 (601)
Q Consensus 316 lplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~-~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~--- 389 (601)
.|+|+||+|++||+++++. +|.|||+|+|+||||.. .. +|+| +|.++.++|+.||++ |.|+|||+..
T Consensus 416 ~p~KrYyiG~VFR~e~pqk----GR~REF~Q~G~EIIG~~~~~~aDAE---VI~La~E~L~~LGi~df~I~INh~~iL~~ 488 (763)
T PLN02972 416 TSFKRYQIAKVYRRDNPSK----GRYREFYQCDFDIAGVYEPMGPDFE---IIKVLTELLDELDIGTYEVKLNHRKLLDG 488 (763)
T ss_pred CcceEEEeccEEecCCCCC----CCCccceEEeEEEEcCCCcchhhHH---HHHHHHHHHHhCCCCceEEEeCCHHHHHH
Confidence 4899999999999999988 89999999999999974 44 7999 899999999999997 9999999861
Q ss_pred --ccCCChh-hHHHHHHHHH------------HHHHHcCCCccccCCCCc---cccc--chh----------------hh
Q 007503 390 --KYLGDLA-TWEKAEAALT------------EALNEFGKPWQINEGDGA---FYGP--KID----------------IS 433 (601)
Q Consensus 390 --~~lG~~~-~~~~~~~~L~------------~~L~~~~~~~~~~~g~~a---f~gp--ki~----------------~~ 433 (601)
..+|.+. .+......+. +.++..|++-+....-.. +.|+ .+. ..
T Consensus 489 ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~ 568 (763)
T PLN02972 489 MLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRA 568 (763)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHH
Confidence 3344432 2222111110 111111211000000000 0011 000 01
Q ss_pred HHHHHhhhhhhcc---e--eeccCCCcccceeEeecC----------------CCC----------cccceEEecccccc
Q 007503 434 VSDALKRKFQCAT---L--QLDFQLPDRFNLGYSAED----------------EAK----------TERPVMIHRAILGS 482 (601)
Q Consensus 434 ~~d~l~~~~~~~t---i--~ld~~l~~~~~L~Y~t~~----------------~g~----------~~~P~~i~~ai~GG 482 (601)
..+++...++.+. + .+.|++...+|++||||. ||. ...|+ +|+|+ |
T Consensus 569 aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~FgG~~vPA-VGFSi--G 645 (763)
T PLN02972 569 ALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGMFSGKQVPA-VGVSL--G 645 (763)
T ss_pred HHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHHHhcCCCCCCE-EEEEe--c
Confidence 1223333333221 1 122344456799999975 222 35687 89999 9
Q ss_pred HHHHHHHHHHhcCCCCCC---CCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEE
Q 007503 483 VERMFAILLEHYKGKWPF---WLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFIL 559 (601)
Q Consensus 483 veRli~iL~E~~~g~~p~---~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~ii 559 (601)
+|||+.+|.+. +..+. ..++.+|+|++.+++...+++++++.||++|++|+++. ..++++++++|++.|+++++
T Consensus 646 IERL~~~L~~~--~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~-~~kl~kq~~~A~k~gi~~vV 722 (763)
T PLN02972 646 IERVFAIMEQQ--EEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKV-STRKAKHLKRAKESGIPWMV 722 (763)
T ss_pred HHHHHHHHHHc--ccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHHCCCCEEE
Confidence 99999998664 22221 12457999999988888999999999999999999876 67899999999999999999
Q ss_pred EEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHH
Q 007503 560 VVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 560 vvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~ 598 (601)
|+|++|.++++|+|||+.+++|..++++++++.+++.+.
T Consensus 723 IIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 723 LVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred EECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987764
No 23
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.96 E-value=2.5e-28 Score=260.52 Aligned_cols=276 Identities=20% Similarity=0.229 Sum_probs=199.1
Q ss_pred cccchhhhhhh-ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-E
Q 007503 303 YPDKKRLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-Y 380 (601)
Q Consensus 303 fp~~~~l~~s~-relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~ 380 (601)
|-.-+.+.+.. +.+|++++++|..||+|.+++ ++|+|+|||+|+++|.|+.++.....+.-.+.....+|..+|++ -
T Consensus 150 FvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr-~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~ 228 (539)
T PRK14894 150 FVNFANVLATSARKLPFGIAQVGKAFRNEINPR-NFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRS 228 (539)
T ss_pred HHHHHHHHHhcCCCCCeeEEeeeccccCccCCC-CceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33445555555 489999999999999999998 99999999999999999999875555666888889999999997 5
Q ss_pred EEEEccCCC--ccCCChhhHHHHHHHHHHHHHHcC-CCccccCCCCcccccchhhhHHHHHhhhhh-----hcceeeccC
Q 007503 381 ELKLSTRPE--KYLGDLATWEKAEAALTEALNEFG-KPWQINEGDGAFYGPKIDISVSDALKRKFQ-----CATLQLDFQ 452 (601)
Q Consensus 381 ~l~ls~r~~--~~lG~~~~~~~~~~~L~~~L~~~~-~~~~~~~g~~af~gpki~~~~~d~l~~~~~-----~~ti~ld~~ 452 (601)
++++.+.+. -..-...+||. ++ .+. ..|..-.|. +.+-+..+ +.+-+ .++....++
T Consensus 229 ~lrfr~h~~~ElAHYa~~~~D~------e~--~~p~~Gw~E~~Gi----a~RtdyDL----~~H~~~s~~~~l~~~~~~~ 292 (539)
T PRK14894 229 RITIYDVPPDELAHYSKRTFDL------MY--DYPNIGVQEIEGI----ANRTDYDL----GSHSKDQEQLNLTARVNPN 292 (539)
T ss_pred HeeeeecCcHHhhhhhhccEEE------EE--ECCCCCeEEEEEe----ecccccCH----HHHhhhcccCCceeeeccc
Confidence 555533221 11111222221 00 000 011111110 11122222 22111 111122233
Q ss_pred CCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHh---------------------------------------
Q 007503 453 LPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEH--------------------------------------- 493 (601)
Q Consensus 453 l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~--------------------------------------- 493 (601)
.....+|.|.+...++.-.|.+|..+. |++|++.++.++
T Consensus 293 ~~s~~~l~~~~~~~~~~~iP~ViEpS~--G~dR~~~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (539)
T PRK14894 293 EDSTARLTYFDQASGRHVVPYVIEPSA--GVGRCMLAVMCEGYAEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEA 370 (539)
T ss_pred cCCCceEEEEeccCCcccCCceeecCc--chhHHHHHHHHHHHhhhhhcccccccccccccchhhhcccccccccccccc
Confidence 334456788765445566798899999 999999876432
Q ss_pred ---------------------------------------------------cCC--CCCCCCCCceEEEEecCCC---cH
Q 007503 494 ---------------------------------------------------YKG--KWPFWLSPRQAIVCPVSEK---SQ 517 (601)
Q Consensus 494 ---------------------------------------------------~~g--~~p~~lsp~qv~Vip~~~~---~~ 517 (601)
+.| .||+|+||.||.|+|+.++ ..
T Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~ 450 (539)
T PRK14894 371 RDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLV 450 (539)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCcccceecCCCcCCCCceEEEEeccccccchH
Confidence 223 3669999999999999974 34
Q ss_pred HHHHHHHHHHHHcCC-EEEEeCCCCcHHHHHHHHHhcCCcEEEEE-------cccccccCeEEEEECCCCceecccHHHH
Q 007503 518 PYALQVRDHIYRAGY-YVDVDTTDRKIQKKVREAQLAQYNFILVV-------GEEEAKSGQVSVRVRDQGDHSNMSIEDL 589 (601)
Q Consensus 518 ~~A~~i~~~Lr~~Gi-~v~~d~~~~~l~kki~~A~~~g~~~iivv-------G~~E~~~~~V~vr~~~~~~q~~v~l~el 589 (601)
+||.+|++.|+++|+ +|++|+ +.++|||+|+|+..|+||+|+| |++|.++++|+||+|++++|..++++++
T Consensus 451 eyAkeI~~~L~~~Gi~rv~~Dd-sesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~idel 529 (539)
T PRK14894 451 ATAKAVRRQLQVGGRMRTVYDD-TGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISEL 529 (539)
T ss_pred HHHHHHHHHHHHCCCceEEEcC-CCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHH
Confidence 999999999999998 999999 5699999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007503 590 LKHFKEKLE 598 (601)
Q Consensus 590 ~~~l~~~~~ 598 (601)
++.|.+.+.
T Consensus 530 i~~L~~~~~ 538 (539)
T PRK14894 530 EAYLRDRVS 538 (539)
T ss_pred HHHHHHHhc
Confidence 999987653
No 24
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.95 E-value=1.1e-27 Score=262.69 Aligned_cols=296 Identities=23% Similarity=0.321 Sum_probs=194.2
Q ss_pred CCCcceeeccccccchhhhhhhc-cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHH--------
Q 007503 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDE-------- 361 (601)
Q Consensus 292 ~~~l~ri~g~~fp~~~~l~~s~r-elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~E-------- 361 (601)
|+.-|-| |-.-+.|.+..+ .+|++++++|..||+|.+++ +||+|+|||+|+++|.|+.++. ...-
T Consensus 161 PETAQGi----FvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr-~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~ 235 (551)
T TIGR00389 161 PETAQGI----FINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDI 235 (551)
T ss_pred cccchhh----HHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc-cceEEeehhhhchhheecCcccccchhhHHHHHHH
Confidence 4445544 445566666665 89999999999999999998 9999999999999999999852 1110
Q ss_pred --------------------------HHHHHHHHHHHHHHhCcE-EEEEEccC-C-CccCCChhhHHH------------
Q 007503 362 --------------------------VRGVLEFIDYAYRIFGFT-YELKLSTR-P-EKYLGDLATWEK------------ 400 (601)
Q Consensus 362 --------------------------i~~~i~~~~~~l~~lG~~-~~l~ls~r-~-~~~lG~~~~~~~------------ 400 (601)
+.-.+.....+|..+||+ -++++.+- + +...-..++||.
T Consensus 236 ~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E~~ 315 (551)
T TIGR00389 236 LPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIECV 315 (551)
T ss_pred HhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCCcEEEE
Confidence 111244457788889986 33444222 1 111222333431
Q ss_pred --HH---HHHHHHHHHcCCCcccc-----CC---------CCcccccch-------hhhHHHHHhhhhhh-cceeeccCC
Q 007503 401 --AE---AALTEALNEFGKPWQIN-----EG---------DGAFYGPKI-------DISVSDALKRKFQC-ATLQLDFQL 453 (601)
Q Consensus 401 --~~---~~L~~~L~~~~~~~~~~-----~g---------~~af~gpki-------~~~~~d~l~~~~~~-~ti~ld~~l 453 (601)
|- -.|..--+..|.++... |- +....||+. ...+.++....++. +... +|.+
T Consensus 316 G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 394 (551)
T TIGR00389 316 GIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKN-EVEL 394 (551)
T ss_pred EeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhcc-ceec
Confidence 00 00111111111111000 00 000112211 11111111111110 0000 1222
Q ss_pred C-cccceeEeecC-CCCcccceEEeccccccHHHHHHHHHHhcCC------------CCCCCCCCceEEEEecCCC--cH
Q 007503 454 P-DRFNLGYSAED-EAKTERPVMIHRAILGSVERMFAILLEHYKG------------KWPFWLSPRQAIVCPVSEK--SQ 517 (601)
Q Consensus 454 ~-~~~~L~Y~t~~-~g~~~~P~~i~~ai~GGveRli~iL~E~~~g------------~~p~~lsp~qv~Vip~~~~--~~ 517 (601)
+ ..+.+..++.. .|+..+|.||+.|+ |+||++++|.++... .||+|++|.+|+|+|++++ ..
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~P~VIepS~--GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~ 472 (551)
T TIGR00389 395 DKDLVEIEMVTEVVHGEKYIPHVIEPSF--GIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELK 472 (551)
T ss_pred chhhhhheeeeeccCCcEecceEEEccc--CHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHH
Confidence 2 12233333332 25577899999999 999999988875422 6899999999999999854 78
Q ss_pred HHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHH
Q 007503 518 PYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 596 (601)
Q Consensus 518 ~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~ 596 (601)
.+|.+|++.||++|++|++|.++ +++||+++|++.|+||+|+||++|+++++|+||+|++++|..++++++.+.+.++
T Consensus 473 ~~A~eIa~~LR~~GI~VeiD~s~-sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 473 EIAKEIFQALRKTGIRIKYDDSG-TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 89999999999999999999976 4999999999999999999999999999999999999999999999998888764
No 25
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.5e-27 Score=260.00 Aligned_cols=255 Identities=18% Similarity=0.277 Sum_probs=187.3
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCC-----
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRP----- 388 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~----- 388 (601)
..|+|++++|++||++.++. +|.|||+|+|+|+||.+++ +|+| +|.++.++|+.||+++.|.|||+.
T Consensus 97 ~~p~r~~y~g~vfR~~~~~~----gr~rE~~Q~g~EiiG~~~~~adaE---vi~la~~~l~~lg~~~~i~l~~~~l~~~i 169 (423)
T PRK12420 97 RLPFKRYEIGKVFRDGPIKQ----GRFREFIQCDVDIVGVESVMAEAE---LMSMAFELFRRLNLEVTIQYNNRKLLNGI 169 (423)
T ss_pred CCCeeEEEEcceECCCCCCC----CccceeEECCeeeECCCCCcccHH---HHHHHHHHHHHCCCCEEEEEcCHHHHHHH
Confidence 46999999999999999887 8999999999999999998 9999 899999999999999999999975
Q ss_pred CccCCChhhHHHHH------------HHHHHHHHHcCCCccc--------cCCCC-c-------ccccchhhhHHHHHhh
Q 007503 389 EKYLGDLATWEKAE------------AALTEALNEFGKPWQI--------NEGDG-A-------FYGPKIDISVSDALKR 440 (601)
Q Consensus 389 ~~~lG~~~~~~~~~------------~~L~~~L~~~~~~~~~--------~~g~~-a-------f~gpki~~~~~d~l~~ 440 (601)
...+|.++.+.... ..+.+.|...+.+... .-+.. . +..+.+ ....+++.+
T Consensus 170 l~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~ 248 (423)
T PRK12420 170 LQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLV-AEGVNELQQ 248 (423)
T ss_pred HHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhccCHHH-HHHHHHHHH
Confidence 12344333221111 1223334333332100 00100 0 001111 112233333
Q ss_pred hhhhcc-------eeeccCCCcccceeEeecC-----------------CCCc------------ccceEEeccccccHH
Q 007503 441 KFQCAT-------LQLDFQLPDRFNLGYSAED-----------------EAKT------------ERPVMIHRAILGSVE 484 (601)
Q Consensus 441 ~~~~~t-------i~ld~~l~~~~~L~Y~t~~-----------------~g~~------------~~P~~i~~ai~GGve 484 (601)
.+..+. +.+| +....+++||||. ||.| ..|+ +|+|+ |+|
T Consensus 249 l~~~l~~~g~~~~i~~D--l~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pA-vGfa~--~~~ 323 (423)
T PRK12420 249 LQQYLIALGINENCIFN--PFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPT-VGISF--GLD 323 (423)
T ss_pred HHHHHHHhCCCCcEEEe--ccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCCc-eeEEE--cHH
Confidence 332221 3344 4455789999975 2222 3487 89999 999
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHH-cCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcc
Q 007503 485 RMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYR-AGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGE 563 (601)
Q Consensus 485 Rli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~-~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~ 563 (601)
|++.+|... +. + .+|.||+|+|+++. ..|.++++.||+ +|++|+++..+.++++++++|++.|++|++|+|+
T Consensus 324 ~l~~~l~~~--~~-~--~~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~~g~~~iviig~ 396 (423)
T PRK12420 324 VIYTALSQK--ET-I--SSTADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELAGRKLKKALNYANKENIPYVLIIGE 396 (423)
T ss_pred HHHHHHHhc--CC-C--CCCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecCCcCHHHHHHHHHHcCCCEEEEECh
Confidence 999988654 22 2 25789999998753 469999999999 9999999999999999999999999999999999
Q ss_pred cccccCeEEEEECCCCceecccHHHH
Q 007503 564 EEAKSGQVSVRVRDQGDHSNMSIEDL 589 (601)
Q Consensus 564 ~E~~~~~V~vr~~~~~~q~~v~l~el 589 (601)
+|.++++|+||++.++++..++++++
T Consensus 397 ~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 397 EEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred hHHhcCeEEEEECCCCceeeeeHHHc
Confidence 99999999999999999999998875
No 26
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.94 E-value=3.6e-26 Score=247.34 Aligned_cols=250 Identities=22% Similarity=0.310 Sum_probs=186.4
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCc
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK 390 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~ 390 (601)
++.+|+|++++|.+||++.++. +|.|||+|+|+|+||.+++ +|+| +|.++.++|+.||++ +.+.|||+..
T Consensus 93 ~~~~p~r~~y~g~vfR~e~~~~----gr~ref~Q~g~eiig~~~~~~d~E---~i~l~~e~l~~lg~~~~~i~i~~~~i- 164 (397)
T TIGR00442 93 LLPKPFKLYYIGPMFRYERPQK----GRYRQFHQFGVEVIGSDSPLADAE---IIALAAEILKELGIKDFTLEINSLGI- 164 (397)
T ss_pred ccCCCeEEEEEcCeecCCCCCC----CcccceEEcCeeeeCCCCHHHHHH---HHHHHHHHHHHcCCCceEEEecCccc-
Confidence 3467999999999999999887 8999999999999999998 9999 899999999999998 9999998851
Q ss_pred cCCChhhHHHHHHHHHHHHHHc-C-CC------cccc-----CC----CCccc--ccchhhhH----HHHHhhhhhhc--
Q 007503 391 YLGDLATWEKAEAALTEALNEF-G-KP------WQIN-----EG----DGAFY--GPKIDISV----SDALKRKFQCA-- 445 (601)
Q Consensus 391 ~lG~~~~~~~~~~~L~~~L~~~-~-~~------~~~~-----~g----~~af~--gpki~~~~----~d~l~~~~~~~-- 445 (601)
...+-...+.+.++|++. . .. +..+ +. ...+. +|++...+ .+++...++.+
T Consensus 165 ----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 240 (397)
T TIGR00442 165 ----LEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFEELKELLDA 240 (397)
T ss_pred ----HHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111112344555555541 1 11 1111 10 01111 34332211 22222222211
Q ss_pred -ceeeccCCCcccceeEeecC-----------------CCC----------cccceEEeccccccHHHHHHHHHHhcCCC
Q 007503 446 -TLQLDFQLPDRFNLGYSAED-----------------EAK----------TERPVMIHRAILGSVERMFAILLEHYKGK 497 (601)
Q Consensus 446 -ti~ld~~l~~~~~L~Y~t~~-----------------~g~----------~~~P~~i~~ai~GGveRli~iL~E~~~g~ 497 (601)
.+.+.|++....+++||||. ||. ...|+ +|+|+ |+||++.+|.+. +.
T Consensus 241 ~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~a-vGfs~--~~~~l~~~l~~~--~~ 315 (397)
T TIGR00442 241 LGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPA-VGFAI--GIERLLLLLEEL--GL 315 (397)
T ss_pred cCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCce-EEeee--cHHHHHHHHHhc--CC
Confidence 11122334445689999875 222 24577 79999 999999999765 56
Q ss_pred CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECC
Q 007503 498 WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD 577 (601)
Q Consensus 498 ~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~ 577 (601)
+|.|.+|.+|+|++++++...++.++++.||++|++|+++....++++++++|++.|++++++||++|.++++|+|||+.
T Consensus 316 ~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~ 395 (397)
T TIGR00442 316 EPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLE 395 (397)
T ss_pred CCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEeCC
Confidence 77777889999999988888899999999999999999999888999999999999999999999999999999999998
Q ss_pred CC
Q 007503 578 QG 579 (601)
Q Consensus 578 ~~ 579 (601)
+|
T Consensus 396 ~~ 397 (397)
T TIGR00442 396 TG 397 (397)
T ss_pred CC
Confidence 75
No 27
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1e-25 Score=232.24 Aligned_cols=271 Identities=20% Similarity=0.252 Sum_probs=195.5
Q ss_pred ceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch--hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC-----
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP----- 388 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~--~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~----- 388 (601)
.++.++|+.+||...+.-.+ +|+|||+|||++|.|.-+| .|+| |+..+.++|+.|||. |.+++|||.
T Consensus 150 sikRy~iAkVyRRd~P~mtr--GR~REFYQcDFDIAG~~d~M~pdaE---~lkiv~e~L~~l~Igd~~iKvNhRkiLdgm 224 (518)
T KOG1936|consen 150 SIKRYHIAKVYRRDQPAMTR--GRYREFYQCDFDIAGQFDPMIPDAE---CLKIVVEILSRLGIGDYGIKVNHRKILDGM 224 (518)
T ss_pred cceeeeEEEEEeccCchhhc--hhhhhhhccCccccccCCCCCchHH---HHHHHHHHHhhcCccceEEEecHHHHHHHH
Confidence 37899999999999884222 8999999999999998877 9999 999999999999998 999999995
Q ss_pred CccCCCh----------------hhHHHHHHHHHHHHHHcCCCc-------------------cccCCCCcccccchhhh
Q 007503 389 EKYLGDL----------------ATWEKAEAALTEALNEFGKPW-------------------QINEGDGAFYGPKIDIS 433 (601)
Q Consensus 389 ~~~lG~~----------------~~~~~~~~~L~~~L~~~~~~~-------------------~~~~g~~af~gpki~~~ 433 (601)
....|.+ .-|+...+++ ..+.|+.- +.-.++..+++.+-...
T Consensus 225 f~v~GVp~~~frtICSsIDKLdK~pwedVkkEm---v~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~e 301 (518)
T KOG1936|consen 225 FAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEM---VFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKE 301 (518)
T ss_pred HHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHH---HHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHH
Confidence 1122332 2244333222 11122110 00001111111111111
Q ss_pred HHHHHhhhhhhcce-----eeccCCCcccceeEeecC----------------------------------CCC------
Q 007503 434 VSDALKRKFQCATL-----QLDFQLPDRFNLGYSAED----------------------------------EAK------ 468 (601)
Q Consensus 434 ~~d~l~~~~~~~ti-----~ld~~l~~~~~L~Y~t~~----------------------------------~g~------ 468 (601)
..+.++..|...++ .+.|.++..+||+||||. +|.
T Consensus 302 al~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~ 381 (518)
T KOG1936|consen 302 ALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVG 381 (518)
T ss_pred HHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCcchhhHHH
Confidence 22333443433221 123445567999999974 010
Q ss_pred ------cccceEEeccccccHHHHHHHHHHhcCCC-CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC-C
Q 007503 469 ------TERPVMIHRAILGSVERMFAILLEHYKGK-WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-D 540 (601)
Q Consensus 469 ------~~~P~~i~~ai~GGveRli~iL~E~~~g~-~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~-~ 540 (601)
...|+ +|.++ ||||++.+|.+...-. -....+..||+|...+........++.+.||++||.+++-+. +
T Consensus 382 mf~~k~~~vPc-vG~S~--GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~yk~~ 458 (518)
T KOG1936|consen 382 MFDKKGDKVPC-VGQSV--GVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLYKAN 458 (518)
T ss_pred HhccccCcCCc-cceee--hHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhhhhcC
Confidence 13676 67788 9999999997764211 111235679999999988899999999999999999998774 6
Q ss_pred CcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHH
Q 007503 541 RKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 541 ~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~ 598 (601)
.++-+|+.+|++.|+|+++|+|++|++.|.|+||+..+++...++.++++..++++++
T Consensus 459 ~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~ 516 (518)
T KOG1936|consen 459 PKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLS 516 (518)
T ss_pred ccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999988765
No 28
>PLN02734 glycyl-tRNA synthetase
Probab=99.93 E-value=2.2e-24 Score=240.03 Aligned_cols=298 Identities=18% Similarity=0.268 Sum_probs=193.9
Q ss_pred CCCcceeeccccccchhhhhhhc-cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchh------------
Q 007503 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQI------------ 358 (601)
Q Consensus 292 ~~~l~ri~g~~fp~~~~l~~s~r-elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~------------ 358 (601)
|+.-|-| |-.-+.|.+..+ .+|+.+++||..||||.+++ +||+|+|||+|+++|.|+.++.-
T Consensus 253 PETAQGi----FvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR-~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~ 327 (684)
T PLN02734 253 PETAQGI----FVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR-QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLE 327 (684)
T ss_pred ccccchh----eeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc-cceeeechhhhhhhheecCcccccccchhhhhhhh
Confidence 4455544 445567777666 89999999999999999999 99999999999999999988621
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHHhCcE-EEEEEccC-C-CccCCChhhHHHH----
Q 007503 359 ------------------------------KDEVRGVLEFIDYAYRIFGFT-YELKLSTR-P-EKYLGDLATWEKA---- 401 (601)
Q Consensus 359 ------------------------------d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r-~-~~~lG~~~~~~~~---- 401 (601)
..-+.-.+.-...+|..+||+ -+++..+- + +..+-..+|||.-
T Consensus 328 l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~ 407 (684)
T PLN02734 328 FLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECS 407 (684)
T ss_pred hhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecC
Confidence 011222466666677788886 34444222 1 1112223344420
Q ss_pred -------------HHHHHHHHHHcCCCccc-----cCC---------CCcccccchhh---hHHHHHhh-------hhh-
Q 007503 402 -------------EAALTEALNEFGKPWQI-----NEG---------DGAFYGPKIDI---SVSDALKR-------KFQ- 443 (601)
Q Consensus 402 -------------~~~L~~~L~~~~~~~~~-----~~g---------~~af~gpki~~---~~~d~l~~-------~~~- 443 (601)
--.|..-.+.-|.++.. .|- +....||+... .+.+++.. .++
T Consensus 408 ~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~ 487 (684)
T PLN02734 408 YGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKA 487 (684)
T ss_pred CCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 00011111111111110 000 00011221110 00111100 000
Q ss_pred ----hcceeec-------cCCCc-ccceeEeecC-CCCcccceEEeccccccHHHHHHHHHHhcC-----------CCCC
Q 007503 444 ----CATLQLD-------FQLPD-RFNLGYSAED-EAKTERPVMIHRAILGSVERMFAILLEHYK-----------GKWP 499 (601)
Q Consensus 444 ----~~ti~ld-------~~l~~-~~~L~Y~t~~-~g~~~~P~~i~~ai~GGveRli~iL~E~~~-----------g~~p 499 (601)
...+.++ +.++. .+.+.-++.. .++.-.|.+|..+. |++|+++++.|+.. ..||
T Consensus 488 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~--GIgRIl~AilE~s~~~~~~De~R~~L~~P 565 (684)
T PLN02734 488 KLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSF--GIGRIIYCLFEHSFYTRPGDEQLNVFRFP 565 (684)
T ss_pred hhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCc--cHHHHHHHHHHHHhccccCCCcceEEecC
Confidence 0111111 11110 1112222211 13455798899999 99999999988743 2599
Q ss_pred CCCCCceEEEEecCC--CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECC
Q 007503 500 FWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD 577 (601)
Q Consensus 500 ~~lsp~qv~Vip~~~--~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~ 577 (601)
.|++|+||.|+|+.. +..++|.+|++.||++|++|.+|+++.++++|+++|++.|+||+|+||. +++|+||+|+
T Consensus 566 p~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRd 641 (684)
T PLN02734 566 PLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDS----DGSVTIRERD 641 (684)
T ss_pred cccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECC
Confidence 999999999999975 3678999999999999999999999899999999999999999999996 8999999999
Q ss_pred CCceecccHHHHHHHHHHHHHhc
Q 007503 578 QGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 578 ~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
+++|..++++++++.+.++++.+
T Consensus 642 sgeQ~rV~ldeLv~~I~~li~~~ 664 (684)
T PLN02734 642 SKDQVRVPVEEVASVVKDLTDGR 664 (684)
T ss_pred CCceEEeeHHHHHHHHHHHHcCC
Confidence 99999999999999998887653
No 29
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.9e-25 Score=231.86 Aligned_cols=320 Identities=23% Similarity=0.346 Sum_probs=205.8
Q ss_pred ccCCCCCCCCCcceEEEeeec--------cceeccCCCCCCcceeeccccccchhhhhhhc-cCceeeeeeccccccccC
Q 007503 262 CRGPHIPNTSFVKGFGCLKAS--------SAYWRGNKDRESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEAS 332 (601)
Q Consensus 262 c~Gphvp~Tg~i~~f~l~~~~--------~g~~l~~~~~~~l~ri~g~~fp~~~~l~~s~r-elplr~~~vg~l~R~e~~ 332 (601)
|+|++- .+..|.|+.-. .||+ .|+.-|-+ |-.-+.|.+..| .+|+++++||..||||.+
T Consensus 135 ~g~~l~----~v~~FNLMF~T~IGp~~~~~~YL----RPETAQGi----FvnFk~l~~~~r~klPFgiaQIGKsfRNEIS 202 (558)
T COG0423 135 CGGELN----EVREFNLMFKTTIGPVEDSLGYL----RPETAQGI----FVNFKNLLEFARNKLPFGIAQIGKSFRNEIS 202 (558)
T ss_pred cCCccC----CcceeeeEEEeeecCCCCcceee----cccccchh----hhhhHHHHHHhccCCCeEEEeechhhccccC
Confidence 455543 67777777432 1232 24445444 455577777665 899999999999999999
Q ss_pred CCCCCceeeeeeeecCeEEEecCch-------------------h-HHH----------------HHHHHHHHHHHHHHh
Q 007503 333 GALTGLTRVRRFQQDDAHIFCRESQ-------------------I-KDE----------------VRGVLEFIDYAYRIF 376 (601)
Q Consensus 333 g~l~gliR~ReF~Q~d~eifg~~~~-------------------~-d~E----------------i~~~i~~~~~~l~~l 376 (601)
++ +||+|+|||.|+++|.|+.++. . ..+ +.-.+..+..++..+
T Consensus 203 Pr-~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~l 281 (558)
T COG0423 203 PR-NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDL 281 (558)
T ss_pred cc-cceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHc
Confidence 99 9999999999999999998865 2 011 112455666677788
Q ss_pred CcE-EEEEEccCC--CccCCChhhHHHHH------------------HHHHHHHHHcCCCccc-----cC---------C
Q 007503 377 GFT-YELKLSTRP--EKYLGDLATWEKAE------------------AALTEALNEFGKPWQI-----NE---------G 421 (601)
Q Consensus 377 G~~-~~l~ls~r~--~~~lG~~~~~~~~~------------------~~L~~~L~~~~~~~~~-----~~---------g 421 (601)
|++ =+++...-+ +-..-..++||.-- -.|..-.+..|.++.. .| -
T Consensus 282 GI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~ 361 (558)
T COG0423 282 GIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKV 361 (558)
T ss_pred CCCHHHhhhhhcChHHHhhhhhcceeEEEecCCCceEEEEEeecccccchhhhhhhccccceeeeccCCcceeeeeeccc
Confidence 886 333332211 11122233343100 0000000000000000 00 0
Q ss_pred CCcccccchhhh---HHHHHhhhhhhcceeec-cCCCc-ccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhc--
Q 007503 422 DGAFYGPKIDIS---VSDALKRKFQCATLQLD-FQLPD-RFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY-- 494 (601)
Q Consensus 422 ~~af~gpki~~~---~~d~l~~~~~~~ti~ld-~~l~~-~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~-- 494 (601)
+..++||+.... +.+++. ........++ +.++. ...+.-.....|+.-.|.+|..|. |++|++.++.++.
T Consensus 362 ~~~~~gp~~k~~a~~v~~~~s-e~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPSf--GidRi~y~~l~~ay~ 438 (558)
T COG0423 362 DLKFLGPEFKKDAKKVAEALS-ELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPSF--GIDRIFYALLEHAYT 438 (558)
T ss_pred chhhcChhhhhhHHHHhhhhh-hhhhhhhccCccccccchhheeeeeeccCceecCceeccCC--CchHHHHHHHHHhhc
Confidence 112234433111 111111 0100001111 00000 000111111114456788899999 9999999887763
Q ss_pred --C-------CCCCCCCCCceEEEEecCCC--cHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcc
Q 007503 495 --K-------GKWPFWLSPRQAIVCPVSEK--SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGE 563 (601)
Q Consensus 495 --~-------g~~p~~lsp~qv~Vip~~~~--~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~ 563 (601)
. .++|++++|.+|+|+|+... ..+.|.+|.+.|++.|+.|.+|+++ ++|++++.++..|.||+|.|..
T Consensus 439 ~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~ 517 (558)
T COG0423 439 EEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG-SIGRRYRRQDEIGTPFCVTVDF 517 (558)
T ss_pred ccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHHHHhcCceEEecCCC-cHhhhhhhccccCCceEEEecC
Confidence 1 15899999999999999764 8999999999999999999999986 9999999999999999999999
Q ss_pred cccccCeEEEEECCCCceecccHHHHHHHHHHHHH
Q 007503 564 EEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 564 ~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~ 598 (601)
+.+++++||||+|||.+|..++++++...|.+++.
T Consensus 518 eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 518 ETLEDNTVTIRERDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred CcccCCcEEEeecCchheeeeeHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988765
No 30
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.5e-20 Score=190.29 Aligned_cols=349 Identities=18% Similarity=0.272 Sum_probs=222.3
Q ss_pred CcEEEEEEcCCCCCCHhHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCe--eee
Q 007503 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL--VDL 261 (601)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~--~D~ 261 (601)
.|+|--+.+ +..+-+.-.+.|..+|+..=.+.|.--.++..+..+-=.. . +...-.+||+-|- -.+
T Consensus 42 ~G~yq~LPl-g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgR----------w-~~~gsEl~rl~Dr~gkq~ 109 (457)
T KOG2324|consen 42 PGLYQLLPL-GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGR----------W-DAMGSELFRLHDRKGKQM 109 (457)
T ss_pred CCceeeccc-hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCc----------c-cccchhheEeeccCCCEe
Confidence 788876655 3334455677888888883377787777787766552111 1 1111223333332 234
Q ss_pred ccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhhhh-hhccCceeeeeeccccccccCCCCCCcee
Q 007503 262 CRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-AFAELPLRLADFGVLHRNEASGALTGLTR 340 (601)
Q Consensus 262 c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~-s~relplr~~~vg~l~R~e~~g~l~gliR 340 (601)
|-+|- -.+..+++- ..... +|+++|+++|++|..||.|..++ .||+|
T Consensus 110 cL~pT------------------------hEE~iT~lm-------at~~~lsykqlPi~vYQigrKfRDElrpR-fGLlR 157 (457)
T KOG2324|consen 110 CLTPT------------------------HEEDITALM-------ATYIPLSYKQLPIRVYQIGRKFRDELRPR-FGLLR 157 (457)
T ss_pred ccCCc------------------------hHHHHHHHH-------HhcCccccccCcEEeeeechhhhhccCcc-ccchh
Confidence 54441 111222210 00112 89999999999999999999999 99999
Q ss_pred eeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccCCChhhHHHHHHHHHH-----HHHHc-
Q 007503 341 VRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTE-----ALNEF- 412 (601)
Q Consensus 341 ~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG~~~~~~~~~~~L~~-----~L~~~- 412 (601)
-|||.|.|++.|.++.. +.+-+..+.+....+++.+|++ +++.-.+- .+|..-..+ -.|.. .|...
T Consensus 158 gREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG---~iGG~vShE---fhl~~~vgED~l~~C~ 231 (457)
T KOG2324|consen 158 GREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSG---DIGGEVSHE---FHLIHPVGEDTLMSCP 231 (457)
T ss_pred hHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeccc---ccCceeeee---EeccCccCccceeecC
Confidence 99999999999999987 8888888999999999999999 66655332 222211100 00000 00000
Q ss_pred CCCccccCCCCcccccch------hh-----hHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccc
Q 007503 413 GKPWQINEGDGAFYGPKI------DI-----SVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG 481 (601)
Q Consensus 413 ~~~~~~~~g~~af~gpki------~~-----~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~G 481 (601)
.-.+..|.. .+-+|++ .. .-.-++++.|-+++.+. ..||..|..-. | .|-++|++++|
T Consensus 232 ~C~~s~n~e--~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS-----~~lna~f~~~~-g---Kpe~l~MgCyG 300 (457)
T KOG2324|consen 232 SCGYSKNSE--DLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYS-----KPLNAKFVNVE-G---KPEFLHMGCYG 300 (457)
T ss_pred cCCccCchh--hhcCCccccCCcccCCCcccccceEEEEEEEeccccc-----cccCceeeeec-C---CcceEEeccee
Confidence 000111110 0111221 00 00113444555555443 36788876554 3 23346777777
Q ss_pred -cHHHHHHHHHHhc----CCCCCCCCCCceE-EEEecCCCcHHHHHHHHHHHHHc------CCEEEEeCC-CCcHHHHHH
Q 007503 482 -SVERMFAILLEHY----KGKWPFWLSPRQA-IVCPVSEKSQPYALQVRDHIYRA------GYYVDVDTT-DRKIQKKVR 548 (601)
Q Consensus 482 -GveRli~iL~E~~----~g~~p~~lsp~qv-~Vip~~~~~~~~A~~i~~~Lr~~------Gi~v~~d~~-~~~l~kki~ 548 (601)
||.|++++.+|.. +.+||..++|++| +|.|-.......+.++..+|-.. .=.+..|++ ..++|++|+
T Consensus 301 IGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~ 380 (457)
T KOG2324|consen 301 IGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIK 380 (457)
T ss_pred ccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHhhh
Confidence 9999999988864 4589999999999 55555555566677777766432 123456665 689999999
Q ss_pred HHHhcCCcEEEEEc-ccccccCeEEEEECCCCceecccHHHHHHHH
Q 007503 549 EAQLAQYNFILVVG-EEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 593 (601)
Q Consensus 549 ~A~~~g~~~iivvG-~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l 593 (601)
+|++.|+||+|||| ..-..+..++|+....|+..+...+.+...+
T Consensus 381 dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 381 DANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLL 426 (457)
T ss_pred hHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHh
Confidence 99999999999999 6777788999999999988887777765544
No 31
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.82 E-value=1.1e-19 Score=196.21 Aligned_cols=221 Identities=19% Similarity=0.248 Sum_probs=153.1
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC----
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP---- 388 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~---- 388 (601)
..|+|++|+|++||+++++. +|.|||+|+|+|+||.+++ +|+| +|.++.++++.+|++ +.|+|||+.
T Consensus 96 ~~p~r~~y~g~vfR~~~~~~----gr~ref~Q~g~EiiG~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~i~~~~i~~~ 168 (391)
T PRK12292 96 PGPLRLCYAGNVFRAQERGL----GRSREFLQSGVELIGDAGLEADAE---VILLLLEALKALGLPNFTLDLGHVGLFRA 168 (391)
T ss_pred CCCeEEEeeceeeecCCCcC----CCccchhccceEEeCCCCchHHHH---HHHHHHHHHHHcCCCCeEEEeccHHHHHH
Confidence 56899999999999999998 9999999999999999998 9999 899999999999997 999999986
Q ss_pred -CccCCChhhHHHHHHHHHHHHHHcCCC----cc--cc-------------CCCCccc--ccchh-----hhHHHHHhhh
Q 007503 389 -EKYLGDLATWEKAEAALTEALNEFGKP----WQ--IN-------------EGDGAFY--GPKID-----ISVSDALKRK 441 (601)
Q Consensus 389 -~~~lG~~~~~~~~~~~L~~~L~~~~~~----~~--~~-------------~g~~af~--gpki~-----~~~~d~l~~~ 441 (601)
...+|-++.+ .+.+..+|++++.. +. +. .|+.... .+++. ....+++...
T Consensus 169 il~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~~~l~~L~~l 245 (391)
T PRK12292 169 LLEAAGLSEEL---EEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLPSLPIKRALDELEAL 245 (391)
T ss_pred HHHHcCCCHHH---HHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 1334433222 22333444333210 00 00 0100000 00000 0112233333
Q ss_pred hhhcc-----eeeccCCCcccceeEeecC---------------CCCc---------ccceEEeccccccHHHHHHHHHH
Q 007503 442 FQCAT-----LQLDFQLPDRFNLGYSAED---------------EAKT---------ERPVMIHRAILGSVERMFAILLE 492 (601)
Q Consensus 442 ~~~~t-----i~ld~~l~~~~~L~Y~t~~---------------~g~~---------~~P~~i~~ai~GGveRli~iL~E 492 (601)
++.+. ..+.|++....+++||||. ||.| ..|+ +|+|+ |+||++.+
T Consensus 246 ~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pA-vGfai--~ldrl~~~--- 319 (391)
T PRK12292 246 AEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFGRARPA-TGFSL--DLDRLLEL--- 319 (391)
T ss_pred HHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcCCCCCC-ceEEe--eHHHHHhh---
Confidence 32211 1123334455789999986 2323 4688 89999 99999974
Q ss_pred hcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCC
Q 007503 493 HYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQY 555 (601)
Q Consensus 493 ~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~ 555 (601)
. ..+. ..+.+++|++.+++....|.++++.||++|++|+++....++++++++|++.|+
T Consensus 320 ~--~~~~--~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 320 Q--LELP--VEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred c--cccc--cccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 1 1121 245678899888888889999999999999999999988889999999999998
No 32
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.76 E-value=4.6e-18 Score=167.07 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=98.7
Q ss_pred CCCCCCCCCceEEEEecCCC------cHHHHHHHHHHHHHcCCEEEEeCCCC-cHHHHHHHHHhcCCcEEEEEccccccc
Q 007503 496 GKWPFWLSPRQAIVCPVSEK------SQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKS 568 (601)
Q Consensus 496 g~~p~~lsp~qv~Vip~~~~------~~~~A~~i~~~Lr~~Gi~v~~d~~~~-~l~kki~~A~~~g~~~iivvG~~E~~~ 568 (601)
..||+|++|.||+|+|++.. ..++|.+|++.|+++|++|++|+++. ++++|+++|++.|+||+|+||++|+++
T Consensus 2 LvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~ 81 (202)
T cd00862 2 LVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEK 81 (202)
T ss_pred CcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhhC
Confidence 47999999999999999765 78899999999999999999999877 999999999999999999999999999
Q ss_pred CeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 569 GQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 569 ~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
|+|+|++|+++++..++++++++.+.+++++-
T Consensus 82 g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i 113 (202)
T cd00862 82 NTVVIVRRDTGEKKTVPLAELVEKVPELLDEI 113 (202)
T ss_pred CEEEEEEecCCcceEEEHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877653
No 33
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.76 E-value=5.7e-18 Score=153.11 Aligned_cols=100 Identities=21% Similarity=0.348 Sum_probs=95.8
Q ss_pred CCCCCCCCceEEEEecC--CCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEE
Q 007503 497 KWPFWLSPRQAIVCPVS--EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVR 574 (601)
Q Consensus 497 ~~p~~lsp~qv~Vip~~--~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr 574 (601)
.||+|++|.+|+|+|.+ ++...+|.++++.||++|++|++|++ .++++|+++|++.|+||++|+|++|.++++|+||
T Consensus 19 ~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk 97 (121)
T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIR 97 (121)
T ss_pred EcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEE
Confidence 69999999999999999 78889999999999999999999999 9999999999999999999999999999999999
Q ss_pred ECCCCceecccHHHHHHHHHHHH
Q 007503 575 VRDQGDHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 575 ~~~~~~q~~v~l~el~~~l~~~~ 597 (601)
+++++++..++++++.+.+.+++
T Consensus 98 ~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 98 ERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred ECCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999998887764
No 34
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.5e-18 Score=179.50 Aligned_cols=128 Identities=21% Similarity=0.301 Sum_probs=116.4
Q ss_pred cceEEeccccccHHHHHHHHHHhcC----------CCCCCCCCCceEEEEecCC--CcHHHHHHHHHHHHHcCCEEEEeC
Q 007503 471 RPVMIHRAILGSVERMFAILLEHYK----------GKWPFWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYYVDVDT 538 (601)
Q Consensus 471 ~P~~i~~ai~GGveRli~iL~E~~~----------g~~p~~lsp~qv~Vip~~~--~~~~~A~~i~~~Lr~~Gi~v~~d~ 538 (601)
.|-+|..+. |+-|++..|.||.- -.+|+.++|.++.|.|++. +....+..|.+.|++.|+.+.+|+
T Consensus 456 ~P~VIEPSf--GiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdd 533 (599)
T KOG2298|consen 456 NPDVIEPSF--GIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDD 533 (599)
T ss_pred cCCcccccc--hhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecC
Confidence 455677788 99999999999851 1478889999999999975 578889999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 539 TDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 539 ~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
++.++|+++..-+..|+||-|.|..+.+++++||+|+|++..|..++++++...+.++...+
T Consensus 534 s~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s~v~~~~~g~ 595 (599)
T KOG2298|consen 534 SSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKSFLIKYISGA 595 (599)
T ss_pred CCCcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999887654
No 35
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.1e-17 Score=182.04 Aligned_cols=276 Identities=23% Similarity=0.306 Sum_probs=185.5
Q ss_pred hhhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 310 KHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 310 ~~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
-.||++||+++|++..+||+|..++ .||+|.|||++.|+|.|..+.. +++++..+++...++|..+|+.|.....+-
T Consensus 122 i~SYkdLPl~lYQi~~kfRdE~rpr-~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~- 199 (500)
T COG0442 122 IRSYKDLPLKLYQIQSKFRDEKRPR-FGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADE- 199 (500)
T ss_pred hhhhhhCCcceeeeeeEEeccccCC-CCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEeecccC-
Confidence 3599999999999999999999998 9999999999999999999987 999999999999999999998866655433
Q ss_pred CccCCChhhHH-----------------HHHHHHHHHH-HHcC-----CC--------cccc----------CCC-Cccc
Q 007503 389 EKYLGDLATWE-----------------KAEAALTEAL-NEFG-----KP--------WQIN----------EGD-GAFY 426 (601)
Q Consensus 389 ~~~lG~~~~~~-----------------~~~~~L~~~L-~~~~-----~~--------~~~~----------~g~-~af~ 426 (601)
+++|...+++ .+-+.+..+. +... .+ |... .|| ..+.
T Consensus 200 -g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v 278 (500)
T COG0442 200 -GFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLV 278 (500)
T ss_pred -CCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEeeeeeEEEEEecCCCCcc
Confidence 3344321110 0112222222 1100 00 0000 121 1122
Q ss_pred ccchh-----------------hhHHHHHhhhhhh------cceeecc----------------CCCc----------cc
Q 007503 427 GPKID-----------------ISVSDALKRKFQC------ATLQLDF----------------QLPD----------RF 457 (601)
Q Consensus 427 gpki~-----------------~~~~d~l~~~~~~------~ti~ld~----------------~l~~----------~~ 457 (601)
+|+.- ....-+.++.+.. .....|- ..|. .+
T Consensus 279 ~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~ 358 (500)
T COG0442 279 LPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAM 358 (500)
T ss_pred CCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhhhhC
Confidence 33211 0001111222211 0011120 1111 12
Q ss_pred ceeEeecCCCCcccc-eEEeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEecCCC---cHHHHHHHHHHHHH
Q 007503 458 NLGYSAEDEAKTERP-VMIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVSEK---SQPYALQVRDHIYR 529 (601)
Q Consensus 458 ~L~Y~t~~~g~~~~P-~~i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip~~~~---~~~~A~~i~~~Lr~ 529 (601)
+..+...+ | ...| .|...++ |++|+++++.|+. +..||...+|.++.|++++.. ....+.++...|..
T Consensus 359 ~a~v~~r~-g-~~~~~~mg~ygi--gvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~ 434 (500)
T COG0442 359 NATVLDRD-G-KEQPKTMGCYGI--GVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPW 434 (500)
T ss_pred eeEEEecC-C-CccceEEEehhh--hhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchhHHHHHHhhhHHHHHHh
Confidence 23333333 2 2223 3556677 9999777776664 347997789999999999863 23345667888888
Q ss_pred cC-CEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHH
Q 007503 530 AG-YYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 593 (601)
Q Consensus 530 ~G-i~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l 593 (601)
.| ..|.+|+++.+.|.++..|+..|+||.+++|++ .+++.|.+|.+.+|+...++.+.+++.+
T Consensus 435 ~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 435 CGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred CCchhhhhhhhccccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchhhccHHHHHHHh
Confidence 99 999999999999999999999999999999999 8889999999999999999888887764
No 36
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.73 E-value=3e-17 Score=176.92 Aligned_cols=217 Identities=17% Similarity=0.131 Sum_probs=145.6
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC----
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP---- 388 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~---- 388 (601)
..|+|++|+|++||++.++. +|.|||+|+|+|+||.+++ +|+| +|.++.++++.||++ +.+.|||+.
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~----gr~rEf~Q~GvEiiG~~~~~aDaE---vi~l~~e~l~~lgi~~~~l~ig~~~i~~~ 171 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGL----FGSRTPLQLGAELYGHAGIEADLE---IIRLMLGLLRNAGVPALHLDLGHVGIFRR 171 (392)
T ss_pred CCceEEEEeeeEEEcCCCcC----CCcCccceeceEEeCCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCCHHHHHH
Confidence 46899999999999999988 8999999999999999998 9999 899999999999998 999999986
Q ss_pred -CccCCChhhHHHHHHHHHHHHHHcCC------------Ccc---------ccCCCCcc----------cccchhhhHHH
Q 007503 389 -EKYLGDLATWEKAEAALTEALNEFGK------------PWQ---------INEGDGAF----------YGPKIDISVSD 436 (601)
Q Consensus 389 -~~~lG~~~~~~~~~~~L~~~L~~~~~------------~~~---------~~~g~~af----------~gpki~~~~~d 436 (601)
.+.+|-++.+ .+.|.+++++... +-. ...|+... ..+++.. ..+
T Consensus 172 il~~l~l~~~~---~~~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~~~~~~~~-~l~ 247 (392)
T PRK12421 172 LAELAGLSPEE---EEELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLALQDAAIRQ-ALD 247 (392)
T ss_pred HHHHcCCCHHH---HHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHH-HHH
Confidence 1345554433 2234445543321 100 00011000 0111111 122
Q ss_pred HHhhhhhhc-------ceeeccCCCcccceeEeecC---------------CCCc---------ccceEEeccccccHHH
Q 007503 437 ALKRKFQCA-------TLQLDFQLPDRFNLGYSAED---------------EAKT---------ERPVMIHRAILGSVER 485 (601)
Q Consensus 437 ~l~~~~~~~-------ti~ld~~l~~~~~L~Y~t~~---------------~g~~---------~~P~~i~~ai~GGveR 485 (601)
.+.+.++.+ .+.+| +....+++||||. ||.| ..|+ +|+|+ |+||
T Consensus 248 ~L~~l~~~l~~~~~~~~~~~D--lslvrgldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pA-vGfai--~ler 322 (392)
T PRK12421 248 ELKTLAAHLKNRWPELPVSID--LAELRGYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGRARPA-TGFSM--DLKE 322 (392)
T ss_pred HHHHHHHHHHhhCCCceEEEe--eccccCCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCCCCCC-ceEEe--eHHH
Confidence 333333322 23344 4446889999986 2323 3688 89999 9999
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEccc
Q 007503 486 MFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEE 564 (601)
Q Consensus 486 li~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~ 564 (601)
++.++.+. + . .+++|++.++. ..+.+++++||++|++|+++..+.. .+| ..++.-.+++|++
T Consensus 323 L~~~l~~~-----~---~-~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~ 384 (392)
T PRK12421 323 LLALQFLE-----E---E-AGAILAPWGDD--PDLLAAIAELRQQGERVVQLLPGDD-----GSS-EPGCDHRLVLQDG 384 (392)
T ss_pred HHhhcccc-----c---C-CceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCCCcc-----hhH-HhCCCeEEEEECC
Confidence 99876321 1 1 26788877754 4578999999999999999875422 224 4577777777743
No 37
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.73 E-value=4.5e-17 Score=180.59 Aligned_cols=136 Identities=20% Similarity=0.317 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCce-EEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHH
Q 007503 151 RDTFWHSSAHILGQAIEQQYGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQA 227 (601)
Q Consensus 151 ~~vy~hS~~hlL~~A~~~~fg~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA 227 (601)
.-+.|||++|||.+|++++||.++ ..|..+. .+++||||.. ..++|++++++||++|+++| |+||+..+++++||
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~-~d~~r~DF~~-~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA 529 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVRQKGSNIT-AERLRFDFSH-PEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEA 529 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccceeecCCcC-CCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHH
Confidence 557799999999999999998764 4564453 2799999986 46899999999999999999 99999999999999
Q ss_pred HHhhhcChhhhhhcccCCCCCcEEEEEeCCe-eeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeecc
Q 007503 228 LEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGI 301 (601)
Q Consensus 228 ~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~ 301 (601)
++++.. .++... .++.|+||++|++ +++|+||||+|||+|+.|+|++.++ ......||.++
T Consensus 530 ~~~~~~-----~lf~e~-y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s-------~g~GvrRI~av 591 (594)
T PRK01584 530 REKGAM-----ALFGEK-YEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQS-------SSSGVRRIRAI 591 (594)
T ss_pred Hhcchh-----hhcccc-CCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEeccc-------ccCCeEEEEEE
Confidence 986432 233322 2578999999998 8999999999999999999999775 23456677543
No 38
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.2e-18 Score=176.82 Aligned_cols=263 Identities=22% Similarity=0.320 Sum_probs=188.2
Q ss_pred ccccchhhhhhhccCceeeeeeccccccccCCCCCCceeeeeee-ecCeEEEecCchhHHHHHHHHHHHHHHHHHh-CcE
Q 007503 302 SYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (601)
Q Consensus 302 ~fp~~~~l~~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~-Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~l-G~~ 379 (601)
-+|.-.+--+|||+|||++.++.++-|.|.++. ..++|.|||. |-|-..|-+.+.++.|+..+|++...+|..+ -++
T Consensus 170 myp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p-~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiP 248 (551)
T KOG4163|consen 170 MYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIP 248 (551)
T ss_pred ecHHHHHHHHhhccCchhhhhhhhheeeeccCC-CcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 456667778899999999999999999999987 7889999997 7777778888889999999999999999755 333
Q ss_pred EEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccc
Q 007503 380 YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFN 458 (601)
Q Consensus 380 ~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~ 458 (601)
+ +.-|. + ..++| . |+-|...++.++. ..||-.|.+|.+ |.-+++..|+
T Consensus 249 V---vkGrK--s----------------e~EkF-------a--Ggd~TttvEa~i~-~~GrgiQgaTSH~LGQNFSkmF~ 297 (551)
T KOG4163|consen 249 V---VKGRK--S----------------EKEKF-------A--GGDYTTTVEAFIP-CSGRGIQGATSHHLGQNFSKMFE 297 (551)
T ss_pred c---ccCcc--c----------------hhhhc-------c--CCcceEEEeeeec-cccccccccchhhhhHHHHHhhc
Confidence 1 11111 0 01111 0 1111111222221 234444545432 4444455677
Q ss_pred eeEeecCCCCcccceEEeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEecCC----------CcHHHHHHHH
Q 007503 459 LGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVSE----------KSQPYALQVR 524 (601)
Q Consensus 459 L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip~~~----------~~~~~A~~i~ 524 (601)
+.|.+...|... ++-.-.+|=-.|.|.+++..+ |..+|+.+++.||+|||++- ...+++..+.
T Consensus 298 i~~ed~~~g~~~---fv~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~ 374 (551)
T KOG4163|consen 298 IVFEDPGEGEKE---FVWQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVE 374 (551)
T ss_pred eeecCCCccchh---heeecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHH
Confidence 777665212111 011111121234444433222 44789999999999999862 2466788999
Q ss_pred HHHHHcCCEEEEeCC-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 525 DHIYRAGYYVDVDTT-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 525 ~~Lr~~Gi~v~~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
..|..+|++|+.|++ +.+.|.|+...+..|+|..|-+|.+++++++|.+-.|+++++..|++++|...+++++++
T Consensus 375 ~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe~ 450 (551)
T KOG4163|consen 375 SRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLEK 450 (551)
T ss_pred HHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHHH
Confidence 999999999999997 689999999999999999999999999999999999999999999999999999988875
No 39
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.71 E-value=2.9e-17 Score=141.47 Aligned_cols=91 Identities=31% Similarity=0.623 Sum_probs=87.9
Q ss_pred eEEEEecCC---CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCcee
Q 007503 506 QAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHS 582 (601)
Q Consensus 506 qv~Vip~~~---~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~ 582 (601)
||+|+|++. +..++|.++++.||++|++|++|+++.++++||++|++.|+||++|||++|.++++|+||+|+++++.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~ 80 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQE 80 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEE
Confidence 689999999 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHH
Q 007503 583 NMSIEDLLKHFKEK 596 (601)
Q Consensus 583 ~v~l~el~~~l~~~ 596 (601)
.++++++++.|+++
T Consensus 81 ~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 81 TVSLEELIEYLKEN 94 (94)
T ss_dssp EEECCHHHHHHHHH
T ss_pred EEEHHHHHHHHhhC
Confidence 99999999998763
No 40
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.69 E-value=1.6e-16 Score=165.89 Aligned_cols=114 Identities=27% Similarity=0.530 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHh-c---CCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcE
Q 007503 482 SVERMFAILLEH-Y---KGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNF 557 (601)
Q Consensus 482 GveRli~iL~E~-~---~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~ 557 (601)
-++|++.++..+ + -|.||+|++|.+|+|+|++++...+|.++++.||++|++|++|+++.++++|+++|++.|+||
T Consensus 248 ~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~GaPf 327 (387)
T PRK14938 248 DVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPF 327 (387)
T ss_pred EecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCE
Confidence 567777654332 2 479999999999999999988889999999999999999999998899999999999999999
Q ss_pred EEEEcccccccCeEEEEECCCCceecccHHHHHHHHHH
Q 007503 558 ILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 595 (601)
Q Consensus 558 iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~ 595 (601)
+++||++|+++|+|+||+|++++|..++++++.+.+++
T Consensus 328 vIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk 365 (387)
T PRK14938 328 VIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKR 365 (387)
T ss_pred EEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHh
Confidence 99999999999999999999999999999999887764
No 41
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.68 E-value=2e-16 Score=136.02 Aligned_cols=90 Identities=27% Similarity=0.459 Sum_probs=85.4
Q ss_pred CceEEEEecCC---CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCc
Q 007503 504 PRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGD 580 (601)
Q Consensus 504 p~qv~Vip~~~---~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~ 580 (601)
|+||.|+|++. +...+|.++++.||++|++|++|+++.++++++++|++.|+||++|||++|.++++|+||+|++++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCc
Confidence 78999999987 578899999999999999999999989999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHH
Q 007503 581 HSNMSIEDLLKHF 593 (601)
Q Consensus 581 q~~v~l~el~~~l 593 (601)
+..++++++++.+
T Consensus 81 ~~~~~~~~~~~~l 93 (94)
T cd00861 81 KEEISIDELLEFL 93 (94)
T ss_pred ceEEeHHHHHHhh
Confidence 9999999997765
No 42
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.67 E-value=1.1e-16 Score=160.60 Aligned_cols=151 Identities=25% Similarity=0.253 Sum_probs=123.2
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCCCcc
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKY 391 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~~~ 391 (601)
+|+++|++++++|.+||+|.++. .|++|+|||+|.|+|+||.++++.++...+++++.++|+.||+++++.+++++...
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~-~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~~~ 161 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFG 161 (235)
T ss_pred cchhcCeeeeeecccccCCCCCC-CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChhhc
Confidence 56789999999999999999987 88999999999999999999654444444999999999999999999998876432
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHH-hhhhhhcceeeccCCCcccceeEeecCCCCcc
Q 007503 392 LGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDAL-KRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE 470 (601)
Q Consensus 392 lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l-~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~ 470 (601)
.|.. +|.++++++++++.+.+.. ++.+++++.+.+++++.++...|.+.+ ++..
T Consensus 162 ~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (235)
T cd00670 162 RGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDED-GGGR 216 (235)
T ss_pred cCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccC-CCce
Confidence 2222 3444566889988887777 788899999999888877777776655 4556
Q ss_pred cceEEeccccccHHHHHHHH
Q 007503 471 RPVMIHRAILGSVERMFAIL 490 (601)
Q Consensus 471 ~P~~i~~ai~GGveRli~iL 490 (601)
.|.+++++. |+||++++|
T Consensus 217 ~~~~~~~~~--~~eR~l~al 234 (235)
T cd00670 217 AHTGCGGAG--GEERLVLAL 234 (235)
T ss_pred eeEEEeCcc--HHHHHHHHH
Confidence 788899995 999999987
No 43
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.66 E-value=6.1e-16 Score=140.93 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred CCCCCCCCCceEEEEecC---CCcHHHHHHHHHHHHHcCCEEEEeCCCC---cHHHHHHHHHhcCCcEEEEEcccccccC
Q 007503 496 GKWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDR---KIQKKVREAQLAQYNFILVVGEEEAKSG 569 (601)
Q Consensus 496 g~~p~~lsp~qv~Vip~~---~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~---~l~kki~~A~~~g~~~iivvG~~E~~~~ 569 (601)
..||..++|+||.|+|+. ++..++|.+|++.|+++|++|.+|++.. ++|+|+++|++.|+||.|+||++.+++|
T Consensus 19 l~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG~~~l~~g 98 (128)
T cd02426 19 LKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLENG 98 (128)
T ss_pred EECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEECCCcccCC
Confidence 479999999999999994 3467889999999999999999999765 8999999999999999999999999999
Q ss_pred eEEEEECCCCceecccHHHHHHHHHHHHH
Q 007503 570 QVSVRVRDQGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 570 ~V~vr~~~~~~q~~v~l~el~~~l~~~~~ 598 (601)
+|++++|+|+++..++++++.+.+.++++
T Consensus 99 ~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 99 LLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 99999999999999999999999987764
No 44
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.65 E-value=8.9e-17 Score=164.34 Aligned_cols=144 Identities=22% Similarity=0.359 Sum_probs=116.0
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEE-EecCchhHHHHHHHHHHHHHHHHHh-CcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~ei-fg~~~~~d~Ei~~~i~~~~~~l~~l-G~~~~l~ls~r~ 388 (601)
.+|+++|++++++|.+||+|.++. .||+|+|||+|.|+|+ ||++++++.|+..+++++.++|+.| ||+|.+......
T Consensus 113 ~s~r~LPlr~~~~~~~fR~E~~~~-~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~ 191 (261)
T cd00778 113 RSYRDLPLKINQWVNVFRWETKTT-RPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEW 191 (261)
T ss_pred cchhhcCHHHHhhhhhccCCCCCC-CceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcc
Confidence 378999999999999999999998 8999999999999995 7888889999999999999999999 999765542211
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcce-eeccCCCcccceeEeecCCC
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti-~ld~~l~~~~~L~Y~t~~~g 467 (601)
+.+.|...+ .+++..+. .++.++++++ ++++.++.+|++.|.+.+ |
T Consensus 192 d~~~~a~~~------------------------------~~ie~~~p--~~~~~ev~s~~~l~~~~s~r~~i~y~~~~-g 238 (261)
T cd00778 192 EKFAGADYT------------------------------YTIEAMMP--DGRALQSGTSHNLGQNFSKAFDIKYQDKD-G 238 (261)
T ss_pred ccCCCCccc------------------------------eEEEEEee--CCCEEEEEeccccccccchhcCCEEECCC-C
Confidence 333333333 33444444 5788899888 799999999999999776 5
Q ss_pred CcccceEEeccccccHHHHHHHHH
Q 007503 468 KTERPVMIHRAILGSVERMFAILL 491 (601)
Q Consensus 468 ~~~~P~~i~~ai~GGveRli~iL~ 491 (601)
+... +|++++|..+|++++|+
T Consensus 239 ~~~~---~h~~~~g~~~R~i~ali 259 (261)
T cd00778 239 QKEY---VHQTSWGISTRLIGAII 259 (261)
T ss_pred CCcC---cEEecccHHHHHHHHHH
Confidence 4433 47899998899999986
No 45
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.62 E-value=7.1e-15 Score=171.11 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=124.5
Q ss_pred EcCEEeec---c-ccccCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEE-cCccccCCcEEEEEEcCCCC
Q 007503 123 VNGVLWDM---T-RPLEADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLG 196 (601)
Q Consensus 123 Vng~l~dL---~-~~l~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~i-g~~i~~~~Gfy~d~~~~~~~ 196 (601)
.+|.++.. . .++.....|+ -|||+.+ -.-+.+||++|||.+|++++||.++.. |..++ .+++|+||.. ..+
T Consensus 523 ~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR-~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~-~d~~r~Df~~-~~~ 599 (851)
T TIGR00344 523 PNGVVFHFGEVEGGSLKVGDKVIAVIDEKRR-LRIMRNHSATHLLHAALQKVLGNHVWQAGSLVS-VKKLRFDFSH-YRA 599 (851)
T ss_pred ECCEEEEEEEeccCCCCCCCEEEEEEcHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEeccCccc-CCcEEEEecC-CCC
Confidence 47777765 2 2555555565 3776654 233679999999999999999987754 43332 3799999986 468
Q ss_pred CCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCe-eeeccCCCCCCCCCc
Q 007503 197 LNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFV 273 (601)
Q Consensus 197 ~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i 273 (601)
+|++++.+||++||++| |+||+..+++++||.+++.. .++... -++.|+||++|++ ++.|+||||+|||+|
T Consensus 600 lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~-----~~~~e~-y~~~VRVV~Ig~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 600 LTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAF-----ALFGEK-YGEKVRVVSVGDVSVELCGGTHVRNTGEI 673 (851)
T ss_pred CCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchh-----hhcCCC-CCCeEEEEEECCeeccCCCCCccCChhhC
Confidence 99999999999999999 99999999999999987642 222221 1467999999995 688999999999999
Q ss_pred ceEEEeeeccceeccCCCCCCcceeec
Q 007503 274 KGFGCLKASSAYWRGNKDRESLQRVYG 300 (601)
Q Consensus 274 ~~f~l~~~~~g~~l~~~~~~~l~ri~g 300 (601)
+.|+|++.++. .....||+.
T Consensus 674 g~~kI~~~~~~-------~~G~~RIe~ 693 (851)
T TIGR00344 674 GLFKIVKESGI-------AAGVRRIEA 693 (851)
T ss_pred eEEEEEEEeEe-------cCCeEEEEE
Confidence 99999987741 234667753
No 46
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=7.1e-15 Score=171.78 Aligned_cols=161 Identities=19% Similarity=0.304 Sum_probs=124.1
Q ss_pred cCEEeecc----ccccCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceE-EcCccccCCcEEEEEEcCCCCC
Q 007503 124 NGVLWDMT----RPLEADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLC-IGPCTTRGEGFYYDAFYGDLGL 197 (601)
Q Consensus 124 ng~l~dL~----~~l~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~-ig~~i~~~~Gfy~d~~~~~~~~ 197 (601)
+|.+|..- .++..+..|+ -|||+.+. .-+.+||++|||.+|++++||.++. .|..+. .+++++||.. ..++
T Consensus 517 ~g~i~H~~~~~~~~l~~G~~V~~~ID~~rR~-~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~-~~~~r~Df~~-~~~l 593 (865)
T PRK00252 517 NGLIVHRGKVEEGELKVGDEVTAEVDEERRR-AIARNHSATHLLHAALREVLGEHVTQAGSLVA-PDRLRFDFSH-FEAL 593 (865)
T ss_pred CCEEEEEEEeccCCCCCCCEEEEEEcHHHHH-HHHHHHHHHHHHHHHHHHHhhhheEeccCccc-CCeEEEEeec-CCCC
Confidence 78877643 3565555566 47777652 3367999999999999999987764 344443 3799999986 4689
Q ss_pred CHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCC-eeeeccCCCCCCCCCcc
Q 007503 198 NPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFVK 274 (601)
Q Consensus 198 t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~-~~D~c~Gphvp~Tg~i~ 274 (601)
|++++.+||++||++| ++||...+++++||.++.. ..++... ..+.|+|+.+|+ .++.|+||||+|||+|+
T Consensus 594 t~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~-----~~~~~~~-y~~~VRVV~Ig~~d~~~CgGTHV~nTgeIg 667 (865)
T PRK00252 594 TPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGA-----MALFGEK-YGDEVRVVSIGDFSIELCGGTHVSNTGDIG 667 (865)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhCCc-----hhhcccc-CCCeEEEEEECCceeeCCCCCccCCcccCe
Confidence 9999999999999999 9999999999999997421 1233322 257899999999 57899999999999999
Q ss_pred eEEEeeeccceeccCCCCCCcceeec
Q 007503 275 GFGCLKASSAYWRGNKDRESLQRVYG 300 (601)
Q Consensus 275 ~f~l~~~~~g~~l~~~~~~~l~ri~g 300 (601)
.|+|++.++. .....||+.
T Consensus 668 ~~kI~~~~~~-------~~g~~RI~~ 686 (865)
T PRK00252 668 LFKIVSESGV-------AAGVRRIEA 686 (865)
T ss_pred EEEEEEEeee-------cCCeEEEEE
Confidence 9999987741 334567753
No 47
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.61 E-value=5.5e-15 Score=125.93 Aligned_cols=90 Identities=42% Similarity=0.722 Sum_probs=85.8
Q ss_pred CceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceec
Q 007503 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSN 583 (601)
Q Consensus 504 p~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~ 583 (601)
|.+|+|++.+++...+|.++++.||++|++|++|+++.++++++++|++.|+|++++||++|.++++++++++.++++..
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 67999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHH
Q 007503 584 MSIEDLLKHF 593 (601)
Q Consensus 584 v~l~el~~~l 593 (601)
++++++++.+
T Consensus 81 ~~~~~~~~~~ 90 (91)
T cd00860 81 MSLDEFIEKL 90 (91)
T ss_pred EcHHHHHHHh
Confidence 9999987654
No 48
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.58 E-value=2.2e-14 Score=167.54 Aligned_cols=162 Identities=19% Similarity=0.285 Sum_probs=124.1
Q ss_pred EcCEEeecc-cc-ccCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEE-cCccccCCcEEEEEEcCCCCCC
Q 007503 123 VNGVLWDMT-RP-LEADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLN 198 (601)
Q Consensus 123 Vng~l~dL~-~~-l~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~i-g~~i~~~~Gfy~d~~~~~~~~t 198 (601)
.+|.++..- .+ +..+..|+ -|||+.+ -.-+.+||++|||.+|++++||.++.. |..++ .+.+++||.. ...+|
T Consensus 562 ~~g~i~H~~~~~~l~~G~~V~~~VD~~rR-~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~lt 638 (902)
T TIGR03683 562 VGGVIVHKVDGEGIKEGDEVKGEIDWERR-LRLMRHHTATHVLLAAARRVLGRHVWQAGAQKD-TDKARLDITH-YKRIS 638 (902)
T ss_pred ECCEEEEEeCCCCCCCCCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeecCcccc-CCcEEEEEeC-CCCCC
Confidence 577777543 22 44444555 4777655 234669999999999999999988754 54443 2688999975 46899
Q ss_pred HhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhccc-CCCCCcEEEEEeCCe-eeeccCCCCCCCCCcc
Q 007503 199 PDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIND-LPADKTITVYRCGPL-VDLCRGPHIPNTSFVK 274 (601)
Q Consensus 199 ~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~-~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i~ 274 (601)
++++.+||+.+|++| |+|++..+++++||.+++. ..+... .+.++.|+|+++|++ +..|+||||+|||+|+
T Consensus 639 ~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG 713 (902)
T TIGR03683 639 EEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYG-----FRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIG 713 (902)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCc
Confidence 999999999999999 9999999999999998654 223321 234678999999997 6889999999999999
Q ss_pred eEEEeeeccceeccCCCCCCcceee
Q 007503 275 GFGCLKASSAYWRGNKDRESLQRVY 299 (601)
Q Consensus 275 ~f~l~~~~~g~~l~~~~~~~l~ri~ 299 (601)
.|+|++.++- .+...||+
T Consensus 714 ~~kI~~~~~i-------~~Gv~RIe 731 (902)
T TIGR03683 714 PIKILKTERI-------QDGVERIE 731 (902)
T ss_pred eEEEEEEEEe-------cCCeEEEE
Confidence 9999987641 23455774
No 49
>PLN02900 alanyl-tRNA synthetase
Probab=99.58 E-value=4.1e-14 Score=165.33 Aligned_cols=165 Identities=17% Similarity=0.317 Sum_probs=124.3
Q ss_pred EcCEEeec----cccccCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEE-cCccccCCcEEEEEEcCCCC
Q 007503 123 VNGVLWDM----TRPLEADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLG 196 (601)
Q Consensus 123 Vng~l~dL----~~~l~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~i-g~~i~~~~Gfy~d~~~~~~~ 196 (601)
.+|.++.. ..++..+..|+ -|||+.+ -.-+.+||++|||.+|++++||.++.. |..++ .+.+++||.. ..+
T Consensus 561 ~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR-~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~ 637 (936)
T PLN02900 561 AGGFVLHIGTVTEGSVSVGDAVTCKVDYDRR-RRIAPNHTATHLLNSALKEVLGDHVDQKGSLVA-FEKLRFDFSH-GKP 637 (936)
T ss_pred ECCEEEEEEEeccCCCCCCCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHcCCcEEecccccc-CCeEEEEeeC-CCC
Confidence 47887764 33565555566 4777655 234669999999999999999887653 44343 2789999986 568
Q ss_pred CCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCe--eeeccCCCCCCCCC
Q 007503 197 LNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL--VDLCRGPHIPNTSF 272 (601)
Q Consensus 197 ~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~--~D~c~Gphvp~Tg~ 272 (601)
+|++++.+||++||++| |.||+..+++++||.++... . .++... ..+.|+|+.+|++ +++|+||||+|||+
T Consensus 638 lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~---~-~~f~e~-y~~~VRVV~Ig~~~d~elCGGTHV~nTge 712 (936)
T PLN02900 638 MTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGL---R-AVFGEK-YPDPVRVVSVGGVYSMELCGGTHVSNTAE 712 (936)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccCh---H-hhcCCC-CCCcEEEEEECCccceeCCCCCcCCcccc
Confidence 99999999999999999 99999999999999984221 1 111221 1357999999996 57899999999999
Q ss_pred cceEEEeeeccceeccCCCCCCcceeeccc
Q 007503 273 VKGFGCLKASSAYWRGNKDRESLQRVYGIS 302 (601)
Q Consensus 273 i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~ 302 (601)
|+.|+|++.++- .....||+.++
T Consensus 713 IG~fkIls~~~~-------~~G~rRIe~v~ 735 (936)
T PLN02900 713 AEAFKLLSEEGI-------AKGIRRITAVT 735 (936)
T ss_pred CceEEEEEEeee-------cCCeEEEEEEE
Confidence 999999987641 23466886443
No 50
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.56 E-value=8.7e-14 Score=162.51 Aligned_cols=162 Identities=20% Similarity=0.309 Sum_probs=122.2
Q ss_pred EcCEEeec-cccc-cCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEE-cCccccCCcEEEEEEcCCCCCC
Q 007503 123 VNGVLWDM-TRPL-EADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLN 198 (601)
Q Consensus 123 Vng~l~dL-~~~l-~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~i-g~~i~~~~Gfy~d~~~~~~~~t 198 (601)
++|.++.. ..+. ..+..|+ -||++.+. .-+-+||++|||.+|++++||.++.. |..++ .+.+++||.. ...+|
T Consensus 558 ~~g~i~H~~~~~~~~~G~~V~~~VD~~rR~-~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~lt 634 (900)
T PRK13902 558 VGGVIVHVLEGEPPKKGDEVRGEIDWERRY-RLMRHHTATHIILAAARKVLGDHVWQAGAQKT-VDKARLDITH-YKRIT 634 (900)
T ss_pred ECCEEEEEeCCCCCCCCCEEEEEECHHHHH-HHHHHHHHHHHHHHHHHHHhCCceeecCcccc-CCCEEEEEeC-CCCCC
Confidence 57777753 2222 2233455 36666552 23458999999999999999988754 44443 2788999986 46899
Q ss_pred HhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhccc-CCCCCcEEEEEeCCe-eeeccCCCCCCCCCcc
Q 007503 199 PDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIND-LPADKTITVYRCGPL-VDLCRGPHIPNTSFVK 274 (601)
Q Consensus 199 ~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~-~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i~ 274 (601)
++++.+||+.+|++| |+||+..+++++||.+++. ..+... .+.++.|+|+++|++ +..|+||||+|||+|+
T Consensus 635 ~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG 709 (900)
T PRK13902 635 REEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYG-----FRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIG 709 (900)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCe
Confidence 999999999999999 9999999999999998653 233321 234678999999997 6889999999999999
Q ss_pred eEEEeeeccceeccCCCCCCcceee
Q 007503 275 GFGCLKASSAYWRGNKDRESLQRVY 299 (601)
Q Consensus 275 ~f~l~~~~~g~~l~~~~~~~l~ri~ 299 (601)
.|+|++.++. .+...||+
T Consensus 710 ~~kI~~~e~i-------~~Gv~RIe 727 (900)
T PRK13902 710 PIKILKTERI-------QDGVERLE 727 (900)
T ss_pred eEEEEEEEEe-------cCCeEEEE
Confidence 9999987641 23456774
No 51
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.55 E-value=3e-14 Score=122.01 Aligned_cols=90 Identities=32% Similarity=0.603 Sum_probs=84.9
Q ss_pred CceEEEEecCC---CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCc
Q 007503 504 PRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGD 580 (601)
Q Consensus 504 p~qv~Vip~~~---~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~ 580 (601)
|++++|+|.++ ....+|.++++.||++|++|++|+++.++++++++|++.|++|++++|++|++++++++|++++++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~ 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCc
Confidence 67899999988 788999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHH
Q 007503 581 HSNMSIEDLLKHF 593 (601)
Q Consensus 581 q~~v~l~el~~~l 593 (601)
+..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~i 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred eeEEEHHHHHhhc
Confidence 9999999987654
No 52
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-13 Score=156.55 Aligned_cols=132 Identities=19% Similarity=0.306 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHh
Q 007503 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (601)
Q Consensus 153 vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~ 230 (601)
+-.||++|||.+|+++++|.|+....|.-..+-..+||.. .+.+|+|++++||..+|++| |.|+...+|++++|.++
T Consensus 564 ~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH-~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~ 642 (879)
T COG0013 564 MRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSH-YKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK 642 (879)
T ss_pred HhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecC-CCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh
Confidence 4489999999999999999999886666434678899986 68999999999999999999 99999999999999986
Q ss_pred hhcChhhhhhcccCCCCCcEEEEEeCCe-eeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCccee
Q 007503 231 FSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRV 298 (601)
Q Consensus 231 F~~~~~K~~li~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri 298 (601)
+. ..|.... .++.|+|+.+|+| +.+|+|+||+|||.|+.|+|++.++. .....||
T Consensus 643 ----Ga-~alfGek-Y~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~i-------~aGVrRI 698 (879)
T COG0013 643 ----GA-MALFGEK-YGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEGI-------AAGVRRI 698 (879)
T ss_pred ----Ch-HhhcCCc-CCCeEEEEEECCceeeccCCcccCCccceeeEEEEEeccc-------ccCeEEE
Confidence 22 1234444 3489999999998 79999999999999999999998752 3456666
No 53
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.49 E-value=1.3e-13 Score=140.98 Aligned_cols=143 Identities=24% Similarity=0.355 Sum_probs=104.4
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC--Cc
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP--EK 390 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~--~~ 390 (601)
.+|+|++++|.+||++.++. +|.|||+|+|+|+||.+++ +|+| +|.++.++++.+|++ +.+.|||+. ..
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~----g~~re~~Q~g~Eiig~~~~~~daE---~i~l~~~~l~~lg~~~~~i~l~~~~i~~~ 152 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQK----GRYREFYQVGVEIIGSDSPLADAE---VIALAVEILEALGLKDFQIKINHRGILDG 152 (261)
T ss_pred CCCeEEEEEcCEEecCCCCC----CCccceEEeceeeeCCCChHHHHH---HHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 58999999999999999886 8999999999999999988 9999 899999999999998 999999986 22
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhh-------cceeeccCCCcccceeEee
Q 007503 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQC-------ATLQLDFQLPDRFNLGYSA 463 (601)
Q Consensus 391 ~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~-------~ti~ld~~l~~~~~L~Y~t 463 (601)
.+...+.++.....|.+.+++ ...+++...+.. ..+.+|+.+ ..+++|||
T Consensus 153 l~~~~~~~~~~~~~l~~~l~~---------------------~~l~~l~~l~~~l~~~~~~~~i~~d~~~--~r~~~YYt 209 (261)
T cd00773 153 IAGLLEDREEYIERLIDKLDK---------------------EALAHLEKLLDYLEALGVDIKYSIDLSL--VRGLDYYT 209 (261)
T ss_pred HhhccCCCHHHHHHHHHHhhH---------------------HHHHHHHHHHHHHHHcCCCceEEEcCcc--ccCCcccC
Confidence 233334445555666666654 111222222211 124555444 46789998
Q ss_pred cC-----------------CCCc----------ccceEEeccccccHHHHHHHH
Q 007503 464 ED-----------------EAKT----------ERPVMIHRAILGSVERMFAIL 490 (601)
Q Consensus 464 ~~-----------------~g~~----------~~P~~i~~ai~GGveRli~iL 490 (601)
|. ||.| ..|+ +|+|+ |+||++.+|
T Consensus 210 G~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~a-vGfa~--~~d~l~~~~ 260 (261)
T cd00773 210 GIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPA-VGFAI--GLERLLLAL 260 (261)
T ss_pred ceEEEEEECCCCccCeEeeccCHHHHHHHhCCCCCCe-EEEEE--cHHHHHHhh
Confidence 75 2222 4577 88999 999998765
No 54
>PLN02961 alanine-tRNA ligase
Probab=99.46 E-value=8.5e-13 Score=131.79 Aligned_cols=186 Identities=15% Similarity=0.190 Sum_probs=124.1
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhccc--ccceE-EEEEcCEEeecc----------ccccCCCCeE-EeeCCChh
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSL--AANAL-ISMVNGVLWDMT----------RPLEADCDLK-LFTFDSDE 149 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~--~~~~v-~a~Vng~l~dL~----------~~l~~d~~le-~l~~~~~e 149 (601)
+.|.|. ++..++.+|-.|.|.-.-..... .-.++ +-+.+|.+|..- .+|..+..++ -|||+.+
T Consensus 3 ~~viLd--~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR- 79 (223)
T PLN02961 3 IALVLD--RTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRR- 79 (223)
T ss_pred eEEEeC--CceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHH-
Confidence 345552 34456666777777654322110 11122 224588888652 2454445555 3777654
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hCCce-EEcCccccCCcEEEEEEcCCCCCCHhH----HHHHHHHHHHHh--CCCeEEEE
Q 007503 150 GRDTFWHSSAHILGQAIEQQ-YGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDH----FKSIDSEADKAA--KQPFERIE 221 (601)
Q Consensus 150 G~~vy~hS~~hlL~~A~~~~-fg~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~ed----l~~Ie~~m~~ii--~~pi~r~~ 221 (601)
-.-+-.||++|||.+|++++ +|... ..|.... ++-|.|+. ..++.++ +.+||+++|++| ++|++..+
T Consensus 80 ~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~--~~~~v~~~---~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~ 154 (223)
T PLN02961 80 KLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFP--DGPFVEYK---GKIPQGELDSKQDELEAEANELIAEGGKVSAAV 154 (223)
T ss_pred hhhhccCcHHHHHHHHHHHcCCCccccccccccC--Cccceeec---ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEE
Confidence 23355999999999999997 56432 3454455 66677764 3466544 479999999999 99999999
Q ss_pred eCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCeeee-ccCCCCCCCCCcceEEEeeec
Q 007503 222 VTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDL-CRGPHIPNTSFVKGFGCLKAS 282 (601)
Q Consensus 222 v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~~D~-c~Gphvp~Tg~i~~f~l~~~~ 282 (601)
+++++|.++... + +-...+..+.++++++|++... |+|+||.|||+|+.|+|++.+
T Consensus 155 ~~~~ea~~~~~~---~--~~~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~ 211 (223)
T PLN02961 155 LPYDEAAELCGG---S--LPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIR 211 (223)
T ss_pred eCHHHHHHhcCC---c--CCCcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEEE
Confidence 999999886431 1 1111223468999999997655 999999999999999999865
No 55
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.42 E-value=8.3e-14 Score=142.01 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=100.9
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCCCc
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~~ 390 (601)
+|+++|++++++|++||+|.++. .||+|+|||+|.|+|+||.+++ +++|+..++.++.++|+.||++|.+..+++ +
T Consensus 108 s~~~LPlr~~~~~~~FR~E~~~~-~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~--~ 184 (255)
T cd00779 108 SYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADS--G 184 (255)
T ss_pred cHhhCCHHHHhCcceecCCCCCC-CceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecC--C
Confidence 67899999999999999996554 8899999999999999999875 999888899999999999999977776544 4
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCccc---cCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCC
Q 007503 391 YLGDLATWEKAEAALTEALNEFGKPWQI---NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 391 ~lG~~~~~~~~~~~L~~~L~~~~~~~~~---~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g 467 (601)
.+|..... .+.+ .|+.+. -+++..+.|++.| +.++++.|.+.+ |
T Consensus 185 ~~gg~~s~----------------~~~~e~~~~~~~~-----------~e~~s~~~lg~~~-----sr~~~i~~~~~~-~ 231 (255)
T cd00779 185 AIGGSLSH----------------EFHVLSPLKITKG-----------IEVGHIFQLGTKY-----SKALGATFLDEN-G 231 (255)
T ss_pred CCCCcccE----------------EEEEEEecCCCCe-----------EEEEeeeecchhH-----HHhcCcEEECCC-C
Confidence 44443220 0111 111110 0122233333333 348899998765 4
Q ss_pred CcccceEEeccccccHHHHHHHHHHh
Q 007503 468 KTERPVMIHRAILGSVERMFAILLEH 493 (601)
Q Consensus 468 ~~~~P~~i~~ai~GGveRli~iL~E~ 493 (601)
+...+.+.+.|+ |+.|++++++|+
T Consensus 232 ~~~~~~~~~~gi--~~~R~l~ai~e~ 255 (255)
T cd00779 232 KPKPLEMGCYGI--GVSRLLAAIIEQ 255 (255)
T ss_pred CEEeeEecCccc--hHHHHHHHHHcC
Confidence 443333444566 999999999874
No 56
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.41 E-value=4.4e-13 Score=139.64 Aligned_cols=150 Identities=24% Similarity=0.414 Sum_probs=100.9
Q ss_pred hhccCceeeeeeccccccccC---CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEE-EccC
Q 007503 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK-LSTR 387 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~---g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~-ls~r 387 (601)
+|+++|++++++|.+||+|.+ +.+.||.|+|||.|.|+++||+++++++|+..+++++.++|+.|||++++. .++.
T Consensus 126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~ 205 (297)
T cd00770 126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTG 205 (297)
T ss_pred CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCc
Confidence 789999999999999999988 458999999999999999999998899999999999999999999995544 4332
Q ss_pred CCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCC
Q 007503 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 388 ~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g 467 (601)
. +|..... ++.++. -.|+++.+ ++...|.. ..|++. .++++.|.+.++|
T Consensus 206 d---l~~~~~~------------~~d~e~-~~p~~~~~-------------~e~~s~s~-~~d~~s-~r~~i~y~~~~~~ 254 (297)
T cd00770 206 D---LGFAAAK------------KYDIEA-WMPGQGKY-------------REISSCSN-CTDFQA-RRLNIRYRDKKDG 254 (297)
T ss_pred c---ccCchhh------------heeehe-ecCCCCCe-------------EEEEEccC-ccChhh-hhcCcEEecCCCC
Confidence 1 2222110 000000 01211110 00000111 234443 5889999877423
Q ss_pred CcccceE-EeccccccHHHHHHHHHHhc
Q 007503 468 KTERPVM-IHRAILGSVERMFAILLEHY 494 (601)
Q Consensus 468 ~~~~P~~-i~~ai~GGveRli~iL~E~~ 494 (601)
+...+.+ .+.++ |++|++++|+|++
T Consensus 255 ~~~~~~~~~~~~~--~~~R~l~alle~~ 280 (297)
T cd00770 255 KKQYVHTLNGTAL--ATPRTIVAILENY 280 (297)
T ss_pred CeeeeeEecccch--HHHHHHHHHHHhC
Confidence 3222222 44566 9999999999986
No 57
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.40 E-value=8.7e-13 Score=138.61 Aligned_cols=68 Identities=28% Similarity=0.460 Sum_probs=64.2
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
.+.|+|++++|.+||++.++. +|.|||+|+|+|+||.+++ +|+| +|.++.++++.+|++ +.+.|||+.
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~~----gr~re~~Q~g~Eiig~~~~~adaE---vi~l~~~~l~~lg~~~~~i~l~~~~ 153 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESGA----GRSREFTQAGVELIGAGGPAADAE---VIALLIEALKALGLKDFKIELGHVG 153 (314)
T ss_pred CCCCeEEEEeceEeecCCCcC----CCcccccccceEEeCCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCcHH
Confidence 367999999999999999987 8999999999999999998 9999 899999999999997 999999986
No 58
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.39 E-value=2.9e-12 Score=127.69 Aligned_cols=191 Identities=18% Similarity=0.169 Sum_probs=136.2
Q ss_pred EEEeecCCCCHHHHHHhhhcccccceEEEEEcCE-Eeecccc---ccCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHH
Q 007503 93 VKEGKRWETSPMDIAQGISKSLAANALISMVNGV-LWDMTRP---LEADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIE 167 (601)
Q Consensus 93 ~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~-l~dL~~~---l~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~ 167 (601)
+..++..|-.|.|--.-+.....+.++.+.++|. +|..-.. +....+++ .+||+-.. .-+-.||+.|||++++.
T Consensus 32 T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~~~~~vG~~V~~~IDW~rRy-~~mr~HTa~Hlls~~~~ 110 (241)
T COG2872 32 TIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEHAKLKVGDKVKLKIDWERRY-RHMRMHTALHLLSAVLY 110 (241)
T ss_pred ccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCcccCCCCCEEEEEECcHHHH-HHHhhhHHHHHHHHHhh
Confidence 4445555668888776666666666666666765 5542222 33344666 48888662 34569999999999999
Q ss_pred HHhCCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCC
Q 007503 168 QQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLP 245 (601)
Q Consensus 168 ~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~ 245 (601)
+.|+. ++.|..+.. +--+.||+. +.+++++..+++..+++| |.|+....+++|||.+++.-...+... .+
T Consensus 111 ~~~~~-~~~g~~i~~-d~~~iD~~~---e~~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~---~~ 182 (241)
T COG2872 111 KVYGA-LTTGFEIGE-DYARIDFDG---EDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKV---PP 182 (241)
T ss_pred ccccc-eeecceecc-ccccccccc---ccchhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccC---Cc
Confidence 99985 444444431 333557654 238999999999999999 999999999999999987654444322 22
Q ss_pred CCC-cEEEEEeCCeee-eccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceee
Q 007503 246 ADK-TITVYRCGPLVD-LCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (601)
Q Consensus 246 ~~~-~v~vy~~g~~~D-~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~ 299 (601)
... .+++++||++.. -|+|+||++||+|+.+++.+.+. ..+...|||
T Consensus 183 ~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e~-------k~k~~~Rv~ 231 (241)
T COG2872 183 DVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEK-------KGKGNRRVY 231 (241)
T ss_pred cccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEEE-------ecCceEEEE
Confidence 333 899999999532 39999999999999999998854 244666775
No 59
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.35 E-value=1.6e-12 Score=141.48 Aligned_cols=161 Identities=25% Similarity=0.392 Sum_probs=108.3
Q ss_pred hhccCceeeeeeccccccccCC---CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEE-EEccC
Q 007503 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTR 387 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g---~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l-~ls~r 387 (601)
+|++||+++++++.+||+|..+ ...||+|+|||+|.|+|+||+++++++|+..++.++.++|+.||++|++ .++++
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~ 324 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCTG 324 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 7889999999999999999976 4799999999999999999999889999999999999999999999776 55443
Q ss_pred CCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCC
Q 007503 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 388 ~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g 467 (601)
. +|..+.... .+.. | .|+.+.+. ++.....| .|++ +.++++.|.+...|
T Consensus 325 d---lg~~a~~~~---DiE~--------w--~p~~~~~~----------ev~s~snc----~d~q-srr~~i~~~~~~~~ 373 (425)
T PRK05431 325 D---LGFSAAKTY---DLEV--------W--LPSQNTYR----------EISSCSNC----TDFQ-ARRANIRYRDEGDG 373 (425)
T ss_pred c---cCCchHhee---cHHH--------h--CcccCCee----------EEEEecCc----cchh-hhhcCcEEecCCCC
Confidence 2 222211100 0000 1 12222110 00000111 2333 23778999876214
Q ss_pred Ccccce-EEeccccccHHHHHHHHHHhcC---C--CCCCCCCCc
Q 007503 468 KTERPV-MIHRAILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (601)
Q Consensus 468 ~~~~P~-~i~~ai~GGveRli~iL~E~~~---g--~~p~~lsp~ 505 (601)
....+. +-|.|+ +++|+++++.|++. | .||..++|+
T Consensus 374 ~~~~~htln~t~~--a~~R~l~ailE~~q~~~g~i~iP~~l~py 415 (425)
T PRK05431 374 KPELVHTLNGSGL--AVGRTLVAILENYQQADGSVTIPEVLRPY 415 (425)
T ss_pred ceeEEEEeCCchh--hHHHHHHHHHHHCCCCCCcEECChhhhcc
Confidence 333233 234567 99999999999872 3 688777765
No 60
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.34 E-value=1.8e-12 Score=132.83 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=74.3
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC-chhHHHHHHHHHHHHHHHHHhC-cEEEEEEccCCC
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFG-FTYELKLSTRPE 389 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~-~~~d~Ei~~~i~~~~~~l~~lG-~~~~l~ls~r~~ 389 (601)
+|+++|++++++|.+||+|.++. .||+|+|||+|.|+|+||.+ +++++|+..+++++.++|+.|| ++|++...++++
T Consensus 114 s~~~LPlrl~~~~~~fR~E~r~~-~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d 192 (264)
T cd00772 114 SWKDLPQHLNQIGNKFRDEIRPR-FGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGA 192 (264)
T ss_pred hhhccCeeEEEEeCeEeCcCCCC-CCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCc
Confidence 68899999999999999997764 89999999999999999655 4599999999999999999999 889999888877
Q ss_pred ccCCChh
Q 007503 390 KYLGDLA 396 (601)
Q Consensus 390 ~~lG~~~ 396 (601)
+++|...
T Consensus 193 ~~~g~~~ 199 (264)
T cd00772 193 KFAGASK 199 (264)
T ss_pred cccCCcC
Confidence 6666643
No 61
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.32 E-value=3.5e-12 Score=138.54 Aligned_cols=161 Identities=24% Similarity=0.421 Sum_probs=106.5
Q ss_pred hhccCceeeeeeccccccccCC---CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEE-EEccC
Q 007503 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTR 387 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g---~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l-~ls~r 387 (601)
+|++||++++++|.+||+|..+ ...||+|+|||+|.|+++||+++++.+|+..++.++.++|+.|||+|++ .+.+.
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~ 326 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCSG 326 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCcc
Confidence 7889999999999999999974 3689999999999999999999999999999999999999999999664 45443
Q ss_pred CCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCC
Q 007503 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 388 ~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g 467 (601)
. +|...... + .+.. | .|+.+.+. ++.....| .||+. .++++.|.+..++
T Consensus 327 d---lg~~a~~~-y--diE~--------w--~p~~~~~~----------ev~s~sn~----~d~qs-rr~~i~y~~~~~~ 375 (418)
T TIGR00414 327 D---LGFSAAKK-Y--DLEV--------W--MPGQNTYR----------EISSCSNC----TDFQA-RRLNIRYKDKNKG 375 (418)
T ss_pred c---cccCHhhh-h--hHHH--------h--CCCcCceE----------EEEEEcCc----chHhH-HhCCcEEECCCCC
Confidence 2 22211100 0 0000 0 12211110 00000111 23432 4789999976523
Q ss_pred Ccccce-EEeccccccHHHHHHHHHHhcC---C--CCCCCCCCc
Q 007503 468 KTERPV-MIHRAILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (601)
Q Consensus 468 ~~~~P~-~i~~ai~GGveRli~iL~E~~~---g--~~p~~lsp~ 505 (601)
+...+. +.+.++ |++|+++++.|++. | .||..+.|+
T Consensus 376 ~~~~vh~ln~~~~--ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 376 KNKYVHTLNGTAL--AIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred ceEEEEeecCcch--HHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 222122 235566 99999999999862 3 478766664
No 62
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.30 E-value=1.4e-11 Score=104.03 Aligned_cols=88 Identities=24% Similarity=0.499 Sum_probs=82.2
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceeccc
Q 007503 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMS 585 (601)
Q Consensus 506 qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~ 585 (601)
+|+|++.+++...+|.++++.||++|++|+++....++++++++|++.|+++++++|+++..+++++++++.++++..++
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~~ 82 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETVA 82 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEEe
Confidence 78999999888899999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007503 586 IEDLLKHF 593 (601)
Q Consensus 586 l~el~~~l 593 (601)
++++++.+
T Consensus 83 ~~~~~~~~ 90 (91)
T cd00859 83 LDELVEEL 90 (91)
T ss_pred HHHHHHHh
Confidence 98887655
No 63
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.27 E-value=8.8e-12 Score=98.29 Aligned_cols=60 Identities=40% Similarity=0.589 Sum_probs=56.7
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
|+|++|||+.++++. |+|++|+|+.|++++++.+++|+|||++|||++||+.||.|++++
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999998 899999999999999999999999999999999999999999986
No 64
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.20 E-value=3.8e-11 Score=124.01 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=54.2
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
..|+|++|+|++||++. |||+|+|+|++|.++. +| +|.++.++++.+|+++.|+|||+.
T Consensus 93 ~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~--~E---vi~la~~~l~~lgl~~~i~ig~~~ 151 (281)
T PRK12293 93 TEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL--SE---ILNIAAEIFEELELEPILQISNIK 151 (281)
T ss_pred CCceeEEEeccEEecCC----------CcccccCeEeeCCCCH--HH---HHHHHHHHHHHcCCCCEEEECCHH
Confidence 56899999999999973 8999999999999987 58 899999999999999789999986
No 65
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.16 E-value=4.1e-11 Score=115.02 Aligned_cols=76 Identities=37% Similarity=0.662 Sum_probs=69.7
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCc-EEEEEEccCCC
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPE 389 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~-~~~l~ls~r~~ 389 (601)
|+++|++++++|.+||+|. +...|+.|+|||+|.|+|+||.++++..++..+++++.++|+.||| +|++.++++++
T Consensus 79 ~~~LP~~~~~~g~~fR~E~-~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~ 155 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEA-RPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGE 155 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSS-SSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCT
T ss_pred cccCCeEEeeccccccccc-ccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCc
Confidence 8899999999999999998 6669999999999999999999977888888999999999999999 79999988853
No 66
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.16 E-value=8e-11 Score=126.16 Aligned_cols=64 Identities=27% Similarity=0.313 Sum_probs=58.4
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc-h-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-Q-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~-~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
..|.|++|+|++||++ . +|.|||+|+|+|+||..+ + +|+| +|.++.++|+.+|++ +.|.|||+.
T Consensus 80 ~~p~R~~Y~g~VfR~~---~----gr~rEf~Q~GvEiiG~~~~~~aDaE---vi~l~~~~L~~lgl~~~~i~ig~~~ 146 (373)
T PRK12295 80 GEPARYAYLGEVFRQR---R----DRASEFLQAGIESFGRADPAAADAE---VLALALEALAALGPGDLEVRLGDVG 146 (373)
T ss_pred CCCeEEEEEccEEECC---C----CCCCcceEeeEEeeCCCCCccchHH---HHHHHHHHHHHcCCCceEEEeCCHH
Confidence 5689999999999999 2 589999999999999754 5 8999 899999999999998 999999986
No 67
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.12 E-value=1e-10 Score=119.28 Aligned_cols=106 Identities=24% Similarity=0.145 Sum_probs=79.6
Q ss_pred hhhhhh-ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 308 RLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 308 ~l~~s~-relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
....++ +++|++++++|.+||+|.+++ .||+|+|||+|+|+|+||+++++..++..++++..++|..+|++ -.+++.
T Consensus 97 ~~~~~~~~~lP~~~~qig~~fR~E~~~~-~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~ 175 (254)
T cd00774 97 NLLEFNRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSPENLRLT 175 (254)
T ss_pred HHHHHhCCCCCchhhhhchhhccccCcc-cceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 334444 599999999999999999999 99999999999999999999999999999999999999999986 334443
Q ss_pred cCC--CccCCChhhHHHHHHHHHHHHHHcCC
Q 007503 386 TRP--EKYLGDLATWEKAEAALTEALNEFGK 414 (601)
Q Consensus 386 ~r~--~~~lG~~~~~~~~~~~L~~~L~~~~~ 414 (601)
..+ +..+=..+.|+.....-...++..|+
T Consensus 176 ~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi 206 (254)
T cd00774 176 DHEKEELAHYANETLDYFYAFPHGFLELEGI 206 (254)
T ss_pred ecccHhhhhhhHHHHHHHHHHhhhHHHHcCC
Confidence 332 22222344555444443445554444
No 68
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.11 E-value=4.5e-11 Score=131.36 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=67.8
Q ss_pred hhccCceeeee-eccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 312 s~relplr~~~-vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
+|++||+++++ .|.+||+| +|.+.||.|+|||+|.++|+||+++++.+|+..++.++..+++.|||+|...+.+-|
T Consensus 330 s~rdLPLrl~e~sG~cFR~E-sGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DP 406 (517)
T PRK00960 330 DVDELPIKFFDRSGWTYRWE-GGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDDP 406 (517)
T ss_pred ChhhCCHHHhhccCCceeCC-CCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEecccc
Confidence 78899999998 77999999 688999999999999999999999999999999999999999999999444444333
No 69
>PLN02320 seryl-tRNA synthetase
Probab=99.06 E-value=1.7e-10 Score=126.06 Aligned_cols=76 Identities=25% Similarity=0.456 Sum_probs=70.7
Q ss_pred hhccCceeeeeeccccccccC--C-CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccC
Q 007503 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~--g-~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r 387 (601)
+|++||+|+..+|.+||.|.+ | .+.||+|+|+|+|.|+++||.+++++.|+..++.++.++|+.|||+ ..+.+++.
T Consensus 308 s~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tg 387 (502)
T PLN02320 308 LESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATA 387 (502)
T ss_pred CHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 588999999999999999999 7 8899999999999999999999999999999999999999999999 55667654
No 70
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.00 E-value=4e-10 Score=118.22 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=63.7
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHH-HhCcE-EEEEEccCC
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYR-IFGFT-YELKLSTRP 388 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~-~lG~~-~~l~ls~r~ 388 (601)
...|.|++|+|.+||++.++. ++.|||+|+|+|+||.++. +|+| +|.++.++++ .+|++ +.|.|||+.
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~~----g~~re~~Q~g~Eiig~~~~~~daE---vi~l~~e~l~~~l~~~~~~i~i~h~~ 155 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPGK----GRPREFYQCGFEIIGSSSLEADAE---VIKLADEILDRELGLENFTIRINHTG 155 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTTT----TBESEEEEEEEEEESSSSHHHHHH---HHHHHHHHHHHHHTTTSEEEEEEEHH
T ss_pred cCCCceEEEEcceeeccccCC----CCCceeEEEEEEEECCCCHHHHHH---HHHHHHHHHHhhcCCCCcEEEEcCch
Confidence 467899999999999999987 8999999999999999998 9999 8999999997 99997 999999985
No 71
>PLN02678 seryl-tRNA synthetase
Probab=98.95 E-value=9.8e-10 Score=119.54 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=67.6
Q ss_pred hhccCceeeeeeccccccccC--C-CCCCceeeeeeeecCeEEEecCch--hHHHHHHHHHHHHHHHHHhCcEEEEEE
Q 007503 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELKL 384 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~--g-~l~gliR~ReF~Q~d~eifg~~~~--~d~Ei~~~i~~~~~~l~~lG~~~~l~l 384 (601)
+|+++|+|++.++.+||.|.+ | .+.||+|+|||+|.+.-.||.+++ +++++..++..+.++|+.||++|++..
T Consensus 250 s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~ 327 (448)
T PLN02678 250 DPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVS 327 (448)
T ss_pred CHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 578999999999999999998 3 789999999999999999999997 899999999999999999999988743
No 72
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.87 E-value=1.6e-09 Score=79.84 Aligned_cols=43 Identities=44% Similarity=0.753 Sum_probs=33.3
Q ss_pred EEEEEeCC-eeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceee
Q 007503 250 ITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (601)
Q Consensus 250 v~vy~~g~-~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~ 299 (601)
|++|++|+ ++|.|.||||+|||+|+.|+|++.++ .++.++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~-------~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGES-------KGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEE-------EETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEE-------EcCCcEEeC
Confidence 68999999 78999999999999999999995543 356788886
No 73
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.7e-08 Score=108.04 Aligned_cols=136 Identities=17% Similarity=0.305 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHh
Q 007503 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (601)
Q Consensus 153 vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~ 230 (601)
+-.||++|||..|+++++...=-.|..+. .+-+.+||.. ...+|.+++.++|..|+++| +.|+...+++..+|.++
T Consensus 568 m~nHTaTHlLN~aLr~~l~~t~QkGSlV~-pdklRfDf~~-k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i 645 (895)
T KOG0188|consen 568 MRNHTATHLLNFALRQVLKGTDQKGSLVA-PDKLRFDFST-KGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKI 645 (895)
T ss_pred hhcchHHHHHHHHHHHhcccccccccccC-hhHeeeeccc-CCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcC
Confidence 44899999999999999922122344443 3788999975 45699999999999999999 99999999999999875
Q ss_pred hhcChhhhhhcccCCCCCcEEEEEeCCe----eeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccc
Q 007503 231 FSDNNFKVEIINDLPADKTITVYRCGPL----VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGIS 302 (601)
Q Consensus 231 F~~~~~K~~li~~~~~~~~v~vy~~g~~----~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~ 302 (601)
++- .....+. ..+.|+|+.+|.. +.+|+|+|+.+||.|+.|-|+.-.+ -.....||-++.
T Consensus 646 ---~gl-r~v~~E~-YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~-------iakgirRivavT 709 (895)
T KOG0188|consen 646 ---PGL-RAVFDEV-YPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEG-------IAKGIRRIVAVT 709 (895)
T ss_pred ---CCc-ccccCCc-cCCceEEEEeccccccceeecCCcccccccccceEEEechhh-------hhhceeEEEEec
Confidence 111 1122222 2367999999964 6789999999999999999997654 245678885443
No 74
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=98.71 E-value=2.6e-08 Score=105.83 Aligned_cols=129 Identities=20% Similarity=0.249 Sum_probs=90.7
Q ss_pred CCCCCCCCCc---ceEEEeeeccceeccCCCCC-CcceeeccccccchhhhhhhccCceeeeeeccccccccCCCCCCce
Q 007503 264 GPHIPNTSFV---KGFGCLKASSAYWRGNKDRE-SLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLT 339 (601)
Q Consensus 264 Gphvp~Tg~i---~~f~l~~~~~g~~l~~~~~~-~l~ri~g~~fp~~~~l~~s~relplr~~~vg~l~R~e~~g~l~gli 339 (601)
.|....+|.+ +.|++....++-+-.-|+-. .+-|++. +.....|.|++|.|++||..+.-. +
T Consensus 48 d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~----------~~~~~~P~Rl~Y~G~Vfr~~~~~~----g 113 (390)
T COG3705 48 DPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHA----------TLLAGTPLRLSYAGKVFRAREGRH----G 113 (390)
T ss_pred hhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHHH----------HhcCCCCceeeecchhhhcchhcc----C
Confidence 4666776776 67888876665433333321 2333321 122347999999999999993333 6
Q ss_pred eeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCC-----ccCCChhhHHHHHHHHHHHHHHc
Q 007503 340 RVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE-----KYLGDLATWEKAEAALTEALNEF 412 (601)
Q Consensus 340 R~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~-----~~lG~~~~~~~~~~~L~~~L~~~ 412 (601)
|.+||+|.|+|++|.++. +|+| +|.++..+++.+|+. ++|.|+|... ..+|-++.|. +.|..++.+.
T Consensus 114 ~~~Ef~QaGiEllG~~~~~ADaE---vi~la~~~L~~~gl~~~~l~LG~~gif~all~~~~l~~~~~---~~L~~a~~~k 187 (390)
T COG3705 114 RRAEFLQAGIELLGDDSAAADAE---VIALALAALKALGLADLKLELGHAGIFRALLAAAGLPGGWR---ARLRRAFGDK 187 (390)
T ss_pred cccchhhhhhHHhCCCcchhhHH---HHHHHHHHHHHcCCcCeEEEeccHHHHHHHHHHcCCChhHH---HHHHHHHhcc
Confidence 777999999999999887 9999 899999999999998 9999998751 3345555553 4555555443
No 75
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.67 E-value=6e-08 Score=105.67 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=68.8
Q ss_pred hhccCceeeee-eccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 312 s~relplr~~~-vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
+++++|+++++ .+.+||+|..+. .|++|++||.+.+.+.+|+++++.++...++..+.++++.||++|++..++-|
T Consensus 330 s~~dLPlk~~~~s~~CFR~EaGst-rGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDP 406 (520)
T TIGR00415 330 DAEDKPIKFFDRSGWTYRWEAGGA-KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDP 406 (520)
T ss_pred ChhhCCeeEEEEecCeEeCCCCCC-CCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCc
Confidence 56789999998 668999999765 99999999999999999999998888889999999999999999999876644
No 76
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.66 E-value=6.4e-08 Score=75.19 Aligned_cols=61 Identities=59% Similarity=0.917 Sum_probs=55.4
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|++++|+...++. ++|+.++++.++....+.+++|++||+++||++++..|++++|++|
T Consensus 1 ~~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 1 IKITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIITF 61 (61)
T ss_pred CEEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEeC
Confidence 367889998888887 9999999999987777889999999999999999999999999986
No 77
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.65 E-value=2.6e-08 Score=73.37 Aligned_cols=38 Identities=42% Similarity=0.843 Sum_probs=35.1
Q ss_pred EEEEEeCCe-eeeccCCCCCCCCCcceEEEeeeccceec
Q 007503 250 ITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWR 287 (601)
Q Consensus 250 v~vy~~g~~-~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l 287 (601)
+++|.+|++ .+.|.|||++||++|+.|+|++.++.+|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecC
Confidence 579999998 89999999999999999999999987775
No 78
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.49 E-value=1.4e-07 Score=92.34 Aligned_cols=137 Identities=26% Similarity=0.350 Sum_probs=89.1
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE--EEEEEccCCCcc
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT--YELKLSTRPEKY 391 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~--~~l~ls~r~~~~ 391 (601)
+..|++++++|.+||.+.++. ++.|++||+|.+++++|...+...++..+..++.++++.+|++ +.+...+.+.
T Consensus 72 ~~~~~~lfeig~vfr~e~~~~--~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~-- 147 (211)
T cd00768 72 RKLPLRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGE-- 147 (211)
T ss_pred ccCCEEEEEEcceeecCCCcc--ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCchh--
Confidence 468999999999999987643 2578899999999999987652233445899999999999973 5443321110
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeec-cCCCcccceeEeecCCCCcc
Q 007503 392 LGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLD-FQLPDRFNLGYSAEDEAKTE 470 (601)
Q Consensus 392 lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld-~~l~~~~~L~Y~t~~~g~~~ 470 (601)
.|. +..|+..++.+.+..++..+++++... .....++++.|+.+. +...
T Consensus 148 -----~~~------------------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~-~~~~ 197 (211)
T cd00768 148 -----FSP------------------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEA-LEYR 197 (211)
T ss_pred -----hcc------------------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheeccc-cccc
Confidence 000 011233333333333333344444322 233346889998776 6677
Q ss_pred cceEEeccccccHHHH
Q 007503 471 RPVMIHRAILGSVERM 486 (601)
Q Consensus 471 ~P~~i~~ai~GGveRl 486 (601)
.|.++|+++ |+||+
T Consensus 198 ~p~~~~~~~--~~~R~ 211 (211)
T cd00768 198 YPPTIGFGL--GLERL 211 (211)
T ss_pred CceeecCcc--CccCC
Confidence 888899996 99995
No 79
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=98.28 E-value=7.4e-06 Score=84.11 Aligned_cols=98 Identities=12% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCceEEEEecCCCcH-HHHHHHHHHHHHcCCEEEEeC-CCCcHHHHHHHHHhcCCcEEEEEcccc------cccCeEEEE
Q 007503 503 SPRQAIVCPVSEKSQ-PYALQVRDHIYRAGYYVDVDT-TDRKIQKKVREAQLAQYNFILVVGEEE------AKSGQVSVR 574 (601)
Q Consensus 503 sp~qv~Vip~~~~~~-~~A~~i~~~Lr~~Gi~v~~d~-~~~~l~kki~~A~~~g~~~iivvG~~E------~~~~~V~vr 574 (601)
+..+|+|+.++...+ ....+|++.|+++||++|+-. ...++...+.+|...|++++++|-+.+ -..+.|.||
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 457999999998776 889999999999999999944 346999999999999999999997765 233469999
Q ss_pred ECCCCceecccHHHHHHHHHHHHHhc
Q 007503 575 VRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 575 ~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
++.+++...++.+||+.+|.+.+.+|
T Consensus 84 ~l~~~~e~dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 84 SLEKKKETDVDRDELVDWLQQEIRER 109 (273)
T ss_pred ccCCCcccccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999988776
No 80
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.17 E-value=4.2e-06 Score=64.41 Aligned_cols=59 Identities=31% Similarity=0.396 Sum_probs=53.0
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 85 ~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
++.+++|..+++++ ++|+.|+++.++......++++++||+++||++++..|+.|+|++
T Consensus 2 ~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 56777888888887 999999999998777788999999999999999999999999985
No 81
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=98.02 E-value=3.5e-05 Score=77.30 Aligned_cols=142 Identities=14% Similarity=0.199 Sum_probs=102.4
Q ss_pred eccccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHH
Q 007503 129 DMTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDS 207 (601)
Q Consensus 129 dL~~~l~~d~~le~-l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~ 207 (601)
..+.||+...+++. +||..+- --+.+||..|++.+.++++|..+-+ .-++ +||.--+.+.-.++|.+++..||+
T Consensus 85 ~~~~~iePGt~V~V~VD~qkR~-D~MQQHsGQHLitAvad~~fKlkTt-SWel---G~~~sa~e~~~~~mTaeqvaaieq 159 (415)
T KOG2105|consen 85 HVNDYIEPGTTVEVAVDEQKRM-DYMQQHSGQHLITAVADHLFKLKTT-SWEL---GRFRSAIELDTPSMTAEQVAAIEQ 159 (415)
T ss_pred ccCCCCCCCCeEEEEecHHHHh-HHHHHhcchhHHHHHHHhhhcccee-eeec---cceeeccccCCCCccHHHHHHHHH
Confidence 47889998888885 7776441 2267999999999999999964321 2222 466666665446799999999999
Q ss_pred HHHHHh--CCCeEEEEeCHH--HHHHhhhcChhhhhhcccCC--CCCcEEEEEeCCee-eeccCCCCCCCCCcceEEEee
Q 007503 208 EADKAA--KQPFERIEVTRD--QALEMFSDNNFKVEIINDLP--ADKTITVYRCGPLV-DLCRGPHIPNTSFVKGFGCLK 280 (601)
Q Consensus 208 ~m~~ii--~~pi~r~~v~~e--eA~~~F~~~~~K~~li~~~~--~~~~v~vy~~g~~~-D~c~Gphvp~Tg~i~~f~l~~ 280 (601)
.+|+.| .+|....+++.+ +..+.-. ...| ....++++.+|+.. ..|.|+||.+|+.|+.++|+.
T Consensus 160 svNe~I~d~~~~~v~E~sl~d~eVeqVS~---------~~~~D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILg 230 (415)
T KOG2105|consen 160 SVNEKIRDRLPVNVRELSLDDPEVEQVSG---------RGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILG 230 (415)
T ss_pred HHHHHHHhccchheeecccCCcchhhccC---------CCCcccccCceEEEeecCccCCccccccccchhhcceEEEee
Confidence 999999 566655555443 2222211 1112 24579999999964 569999999999999999998
Q ss_pred eccc
Q 007503 281 ASSA 284 (601)
Q Consensus 281 ~~~g 284 (601)
...|
T Consensus 231 tekg 234 (415)
T KOG2105|consen 231 TEKG 234 (415)
T ss_pred cccc
Confidence 7765
No 82
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.94 E-value=2.3e-05 Score=61.17 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=53.0
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
|-|.+|+|+.+++.. ++|+.++++.++......++++.+||+++|+++++..++++++++
T Consensus 1 ~~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 346788999888887 999999999888777778899999999999999999999999874
No 83
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=97.56 E-value=0.0001 Score=79.48 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=52.9
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEE
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELK 383 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ 383 (601)
.+|.|++++|++||++..+. +++|||+|+|++++|.+.. .|.| .++.++|+.||++|++.
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~----thlREF~QL~~eIaG~~atfaDle-----alL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGK----EHLEEFTMLNFCQMGSGCTRENLE-----AIIKDFLDHLEIDFEIV 376 (453)
T ss_pred cCCeeEEEEcCeEecCCCCC----CCcCeEEEEEEEEECCCCCHHHHH-----HHHHHHHHHCCCceEEe
Confidence 67999999999999999888 8999999999999998777 6544 58999999999987663
No 84
>PRK07080 hypothetical protein; Validated
Probab=97.52 E-value=0.00031 Score=72.52 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=56.9
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
..+.-.|.+||+|.+ .++-|+.+|+|-++=.+|+++++.+=-...+.....+.+.||+++++.+.+-|
T Consensus 153 ~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDP 220 (317)
T PRK07080 153 RLVDVASYCFRHEPS---LDPARMQLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEIDLANDP 220 (317)
T ss_pred cEEEeeeeeeccCCC---CCcHHHhheeeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCceeEeecCCc
Confidence 456677999999986 47899999999999999999885332345788899999999999999998877
No 85
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00023 Score=75.64 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=65.0
Q ss_pred ccCceeeeeeccccccccCC---CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCCCc
Q 007503 314 AELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g---~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~~ 390 (601)
.++|+++..++.+||.|... .-.||.|+.||.-.+.-++|.++...+++..++.+..++|+.|||+|++. +.|.+
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl--~m~S~ 340 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVL--NMPSG 340 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEe--cCCch
Confidence 57899999999999999832 44789999999998888888888877777789999999999999998763 12334
Q ss_pred cCCCh
Q 007503 391 YLGDL 395 (601)
Q Consensus 391 ~lG~~ 395 (601)
.+|.+
T Consensus 341 eLg~a 345 (455)
T KOG2509|consen 341 ELGAA 345 (455)
T ss_pred hhCcH
Confidence 45554
No 86
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.001 Score=73.65 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=87.1
Q ss_pred CCCCCCCCCceEEEEecCC-------CcHHHHHHHHHHHHHcCCEEEEeC-CCCcHHHHHHHHHhcCCcEEEEEcccccc
Q 007503 496 GKWPFWLSPRQAIVCPVSE-------KSQPYALQVRDHIYRAGYYVDVDT-TDRKIQKKVREAQLAQYNFILVVGEEEAK 567 (601)
Q Consensus 496 g~~p~~lsp~qv~Vip~~~-------~~~~~A~~i~~~Lr~~Gi~v~~d~-~~~~l~kki~~A~~~g~~~iivvG~~E~~ 567 (601)
-..|+.++|.||.++|..- ....++..++..|...+++++.|. +..+.|.|+..++.+|+|.++-+|.++.+
T Consensus 277 ~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse 356 (500)
T COG0442 277 LVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSE 356 (500)
T ss_pred ccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhhh
Confidence 4678889999999998742 156788899999999999999995 57899999999999999999999999999
Q ss_pred cCeEEEEECCCCc--eecccHHHHHHH-HHHHHH
Q 007503 568 SGQVSVRVRDQGD--HSNMSIEDLLKH-FKEKLE 598 (601)
Q Consensus 568 ~~~V~vr~~~~~~--q~~v~l~el~~~-l~~~~~ 598 (601)
+.++++-++++++ ...++....+.. +...++
T Consensus 357 ~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ie 390 (500)
T COG0442 357 AMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLE 390 (500)
T ss_pred hCeeEEEecCCCccceEEEehhhhhhhHHHHHHH
Confidence 9999999999988 566677777666 554444
No 87
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=97.05 E-value=0.00087 Score=72.46 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=53.1
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEE
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK 383 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ 383 (601)
+.++|+|++++|.+||++..+. .++|||+|.++.++|.+.. -+| +..++.++|+.||++|++.
T Consensus 278 ~~~~P~RIFEIG~VFR~E~~g~----~hlrEf~Ql~~~iiGs~~~-f~d---L~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 278 ILPDPIKIFEIGPCYRKESDGK----EHLEEFTMVNFCQMGSGCT-REN---LENIIDDFLKHLGIDYEII 340 (417)
T ss_pred cccCCeeEEEEeceEecCCCCC----CCcceEEEEEEEEeCCchH-HHH---HHHHHHHHHHHCCCCcEEe
Confidence 4578999999999999998887 7999999999999985544 334 6789999999999987655
No 88
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.00 E-value=0.001 Score=68.58 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=48.9
Q ss_pred CceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EE-EEEccCC
Q 007503 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YE-LKLSTRP 388 (601)
Q Consensus 316 lplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~-l~ls~r~ 388 (601)
.|.|++|+|++||+++ +|+|+|+|++|....++.| ++.++.+++..+|.. +. +.|+|..
T Consensus 83 ~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~~e---~l~la~~~l~~~g~~~~~~i~lGh~~ 143 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANVQQ---SFKLFIQFIQQQLRDNVHFVVLGHYQ 143 (272)
T ss_pred CCceEEEeccEeccCC-----------CcceeceEEECCCchhHHH---HHHHHHHHHHHhCCCCCcEEEeccHH
Confidence 3579999999999874 3899999999966458888 789999999999765 54 7898875
No 89
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=96.97 E-value=0.0011 Score=73.05 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=52.1
Q ss_pred ceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEE
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELK 383 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ 383 (601)
|+|++++|.+||++...+ ++++||||+|..+++.+. ++++ ++.++.++|+.+|+. ++++
T Consensus 357 P~k~fsigrVfR~d~~Da----tH~~eFhQ~Eg~vi~~~~-s~~~---L~~~l~~f~~~lG~~~~Rfr 416 (494)
T PTZ00326 357 PKKYFSIDRVFRNETLDA----THLAEFHQVEGFVIDRNL-TLGD---LIGTIREFFRRIGITKLRFK 416 (494)
T ss_pred CceEEecCCEecCCCCCC----CcCceeEEEEEEEEeCCC-CHHH---HHHHHHHHHHhcCCCceEEe
Confidence 899999999999999888 999999999999998765 5677 789999999999984 4444
No 90
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0056 Score=66.31 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=63.3
Q ss_pred ccCceeeeeeccccccccCC---CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEE
Q 007503 314 AELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKL 384 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g---~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~l 384 (601)
.++|+++.-++.+||.|... ..+||+|+.||+..+.-.||.++++..+...++..+.++++.|+++|++..
T Consensus 250 ~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~ 323 (429)
T COG0172 250 EDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVN 323 (429)
T ss_pred ccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEee
Confidence 36899999999999999876 358999999999999999999999887778899999999999999966544
No 91
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.036 Score=66.17 Aligned_cols=90 Identities=11% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCC--C
Q 007503 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQ--G 579 (601)
Q Consensus 503 sp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~--~ 579 (601)
+..+|.|+..+......+.+|+++||..||++++-.. ...+...-.+|+..-+.++++|- ++...+|...- .
T Consensus 1258 ~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~~s~~~~e~~e~~~~~~i~~iliv~-----n~~~~vks~~~e~~ 1332 (1351)
T KOG1035|consen 1258 SSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPDPSPSLEELTEYANEHEITCILIVT-----NQKEKVKSFELERK 1332 (1351)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeCCCcchHHHHHHHhcCceEEEEEEe-----cceeeechhHHhhh
Confidence 4679999999988889999999999999999999654 57788888888888888888875 66667765542 2
Q ss_pred ceecccHHHHHHHHHHHH
Q 007503 580 DHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 580 ~q~~v~l~el~~~l~~~~ 597 (601)
....+-..+|++++.+.+
T Consensus 1333 se~~~~~~elv~f~~~~~ 1350 (1351)
T KOG1035|consen 1333 SEKVVGRTELVEFLLQAL 1350 (1351)
T ss_pred hhhhhhHHHHHHHHHHhh
Confidence 334456677888776543
No 92
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.11 E-value=0.0086 Score=69.46 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=60.5
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 147 (601)
+.|-|.-|.|..+..+. |+||.|.|=.+.......++.|+|||++++|+++|.++..||.+|-+.
T Consensus 386 d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT~~~ 450 (702)
T PRK11092 386 DEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG 450 (702)
T ss_pred ceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCCCEEEEEeCCC
Confidence 66888889999999999 999999999999999999999999999999999999999999998654
No 93
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.83 E-value=0.019 Score=65.84 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=60.4
Q ss_pred CCCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 007503 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (601)
Q Consensus 81 ~~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 147 (601)
.+.|-|.-|.|.++..+. |+||.|+|=.+.......++.|+|||++++|+++|+....||+++-+.
T Consensus 386 ~d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 386 PDRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEIITSKH 451 (701)
T ss_pred CceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEEeCCC
Confidence 356777779999999888 999999999999888999999999999999999999999999999877
No 94
>PRK07440 hypothetical protein; Provisional
Probab=95.62 E-value=0.059 Score=43.79 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=50.2
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
..|+|++ +|+.++... ++|+.++.+.+. +....+++.+||++.+ -+++|..+.+||+++|
T Consensus 3 ~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 3 NPITLQV-NGETRTCSS-GTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred CceEEEE-CCEEEEcCC-CCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 3588888 678888777 899999998774 3457788899999998 8889999999999886
No 95
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=95.58 E-value=0.02 Score=64.06 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=52.2
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEE
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELK 383 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ 383 (601)
....|++++++|.+||++..+. .++|||+|.++.++|.+- ...| ++.++.+++..+|++ ++++
T Consensus 346 ~~~~p~rlFeiGrVFR~e~~d~----~~l~Ef~ql~~~i~G~~~-~f~e---lkg~l~~ll~~lGi~~~~~~ 409 (489)
T PRK04172 346 RPEPPQKYFSIGRVFRPDTIDA----THLPEFYQLEGIVMGEDV-SFRD---LLGILKEFYKRLGFEEVKFR 409 (489)
T ss_pred cCCCCeEEEEecceEcCCCCCc----ccCCchheEEEEEEeCCC-CHHH---HHHHHHHHHHHhCCceEEEc
Confidence 3467999999999999998776 678999999999999742 3566 788999999999996 5543
No 96
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=95.41 E-value=0.06 Score=42.93 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=46.5
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++..+ ++|+.++...+.- ....++..+||++++ .+.+|..+.+||++.+
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 1 MNIQL-NGEPRELPD-GESVAALLAREGL--AGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHhcCC--CCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 35677 788888887 8999999988653 334555669999987 8999999999999876
No 97
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=95.23 E-value=0.084 Score=42.64 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=49.5
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
+|+|.+ +|+..+... ++|..|+..++. +....+++.+||++++ .+..+.....|+.+.+
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 578888 588888777 699999998875 4567889999999999 9999999789998875
No 98
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.05 E-value=0.037 Score=64.36 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=60.0
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 147 (601)
+.|-|.-|+|..+..+. |+||.|+|-.+........+.|+|||+.++|+++|.++..||+++-+.
T Consensus 404 d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 404 DRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred CeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEeCCC
Confidence 56888889999999998 999999999999888999999999999999999999999999998655
No 99
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.97 E-value=0.044 Score=63.70 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=60.8
Q ss_pred CCCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 007503 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (601)
Q Consensus 81 ~~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 147 (601)
.+.|-|.-|+|..+..+. |+||.|+|-.+........+.|+|||+.++|+++|+++..||+++-+.
T Consensus 359 ~~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~ 424 (683)
T TIGR00691 359 NEEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKN 424 (683)
T ss_pred cCceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCC
Confidence 367888889999999998 999999999999888999999999999999999999999999998765
No 100
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.58 E-value=0.11 Score=42.06 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=47.1
Q ss_pred CeEEEeCCCc----EEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 83 PIKITLPDGS----VKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 83 ~I~v~l~dg~----~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
.|+|++ +|+ .++... ++|+.|+++++.- ....++..+||++...+++|..+.+|+++.+
T Consensus 4 mm~v~v-ng~~~~~~~~~~~-~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKV-IGRGIEKEIEWRK-GMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEE-eccccceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 378888 454 555555 8999999998854 3466888899999989999999999999875
No 101
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.84 E-value=0.16 Score=40.43 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=45.0
Q ss_pred EEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeecc----ccccCCCCeEEeeCC
Q 007503 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTFD 146 (601)
Q Consensus 86 v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~le~l~~~ 146 (601)
|++ +|+.++... ++|+.++...+.- ....++..|||++.+.+ .+|..+.+|+++.+-
T Consensus 2 i~i-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 2 ITV-NGEPREVEE-GATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred EEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 445 678888877 8899999998863 33445666999999888 899999999998763
No 102
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=93.84 E-value=0.22 Score=39.63 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=45.3
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++. . .+|+.++...+.- ....+++.+|+++++- +++|..+.+|+++.+
T Consensus 1 m~i~~-Ng~~~~~-~-~~tl~~Ll~~l~~--~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV-NGETLQT-E-ATTLALLLAELDY--EGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE-CCeEEEc-C-cCcHHHHHHHcCC--CCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 46777 6777776 3 5799999988753 3466888899999986 789999999999876
No 103
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=93.82 E-value=0.21 Score=40.11 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=46.3
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeecc----ccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++.....+|+.|+.+.+.- ....+++.+|+++.+-+ ++|..+.+||+++|
T Consensus 1 m~I~v-NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CEEEE-CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 46677 67777777633789999988753 45678888999999765 88999999999986
No 104
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=93.75 E-value=0.21 Score=39.54 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=45.0
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++... ++|+.++...+... +-++..|||++++- ..+|..+.+|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 1 MDIQL-NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CEEEE-CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 35677 788888777 88999999887542 44677899999864 678999889999875
No 105
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=93.62 E-value=0.28 Score=39.18 Aligned_cols=58 Identities=7% Similarity=0.133 Sum_probs=45.3
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++... ++|+.++.+++.. ..+.++..||+++.+ -.++|..+.+|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 45677 788888877 8899999988754 345688889999975 4457888889999876
No 106
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=92.30 E-value=0.69 Score=39.01 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 81 ~~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
+..|+|++ +|+.++... ++|+.++...+. +....++..+||++.+ -+..|..+.+||++.|
T Consensus 16 ~~~m~I~V-NG~~~~~~~-~~tl~~LL~~l~--~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 16 MVLITISI-NDQSIQVDI-SSSLAQIIAQLS--LPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CceEEEEE-CCeEEEcCC-CCcHHHHHHHcC--CCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 45788888 788888877 889999998874 4556777789999884 4556788889999876
No 107
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=90.56 E-value=0.35 Score=49.87 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=28.9
Q ss_pred eeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 319 r~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
+++++|++||+|..+. .+++||+|.|+|.-..+
T Consensus 71 ~vf~i~~~fR~e~~~~----~hl~EF~~le~e~~~~~ 103 (269)
T cd00669 71 RVFEINRNFRNEDLRA----RHQPEFTMMDLEMAFAD 103 (269)
T ss_pred cEEEEecceeCCCCCC----CcccceeEEEEEEecCC
Confidence 8999999999996666 89999999999976553
No 108
>PRK06437 hypothetical protein; Provisional
Probab=90.19 E-value=1 Score=36.15 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=40.6
Q ss_pred cEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCC
Q 007503 92 SVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFD 146 (601)
Q Consensus 92 ~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~ 146 (601)
+.++... ++|..|+++.+.-. ..-+++.+||++.+.+++|..+.+|+++.+-
T Consensus 13 ~~~~i~~-~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 13 KTIEIDH-ELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEVF 64 (67)
T ss_pred eEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEecc
Confidence 3455555 78999999988643 3344556999999999999998899998864
No 109
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=90.16 E-value=0.38 Score=49.93 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=30.5
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.++. .|.+||+|.|+|.-..+
T Consensus 70 ~~v~~i~~~fR~e~~~~----~r~~Ef~~~e~e~~~~~ 103 (280)
T cd00777 70 DRYFQIARCFRDEDLRA----DRQPEFTQIDIEMSFVD 103 (280)
T ss_pred CcEEEeccceeCCCCCC----CccceeEEeEeeeccCC
Confidence 37999999999999988 78889999999987664
No 110
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=90.05 E-value=0.76 Score=36.63 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=42.8
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEe---eccccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLW---DMTRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~---dL~~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++... ++|+.++...+. +....++..+|+++. +..+.|..+.+|+++.+
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~ll~~l~--~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV-NEEQVEVDE-QTTVAALLDSLG--FPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CEEEE-CCEEEEcCC-CCcHHHHHHHcC--CCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 46777 788888877 899999998874 345667777888733 22345888889999875
No 111
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=89.63 E-value=1 Score=35.59 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=42.0
Q ss_pred CCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 90 DGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 90 dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
+|+.++.+. ++|+.|+.+.+... ...++..|||++.+ -+++|..+.+|+++.+
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 678888877 88999999988643 46677789999874 3458888889999875
No 112
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=87.58 E-value=1.4 Score=44.86 Aligned_cols=65 Identities=12% Similarity=0.296 Sum_probs=49.6
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHh-CcEEEEEE
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~l-G~~~~l~l 384 (601)
..+..|+++.++|.+||.+.... ....+|+|.+.=+.+.+- .-.+ +..++..+++.| |.+.++++
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~D~----th~~~f~Qleg~~~~~~~-~f~~---Lk~~l~~l~~~lfG~~~~~r~ 162 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEIDA----THLPEFHQLEGLVVDKNV-TFED---LKGTLEELLKELFGIDVKVRF 162 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCSBS----SBESEEEEEEEEEEETTE--HHH---HHHHHHHHHHHHHTTTEEEEE
T ss_pred HhcCCCeEEEecCceEecCCccc----ccCccceeEeeEEEeccc-chhH---HHHHHHHHHHHHhhcccceEe
Confidence 44678999999999999998776 789999999887665432 2333 677888888888 98755544
No 113
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=87.33 E-value=1.1 Score=49.19 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=50.0
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
..+|+|++++|.+||++.. .. ...++|+|.+.=+.+.+- .-.+ +..++..+++.||+. ++++-+
T Consensus 204 ~~~PiRIFsIGRVfRrD~~~Da----THl~eFhQlEGLVVdedV-Sf~D---LKgvLe~LLr~LG~~~vRFRPs 269 (533)
T TIGR00470 204 RKLPLKLFSIDRCFRREQREDR----SHLMTYHSASCVVVDEEV-SVDD---GKAVAEGLLAQFGFTKFRFRPD 269 (533)
T ss_pred CCCCeEEEeeeeEEecCCCCCC----ccCceeeeEEEEEECCCC-CHHH---HHHHHHHHHHHhCCceEEeccC
Confidence 4689999999999999963 54 689999998887766533 4444 678888999999986 666654
No 114
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=85.37 E-value=2 Score=45.23 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=46.6
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++... ++|+.|+.+.+.- ....++..|||++++ -+++|.++.+||++.+
T Consensus 1 M~I~V-NGk~~el~e-~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL-NGEPRQVPA-GLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE-CCEEEecCC-CCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 46777 788888777 8999999988754 344556669999998 7779999999999997
No 115
>PRK09350 poxB regulator PoxA; Provisional
Probab=84.78 E-value=0.5 Score=49.66 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=30.6
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
-|++++|++||+|.++. .+.+||+|.|++..+.+
T Consensus 79 ~rvf~i~~~FR~e~~~~----~H~~EFt~lE~y~~~~d 112 (306)
T PRK09350 79 GPIFQICKSFRNEEAGR----YHNPEFTMLEWYRPHYD 112 (306)
T ss_pred cceEEecceeecCCCCC----CCCcHHHhhhhhhhCCC
Confidence 39999999999999977 88999999999988764
No 116
>PRK01777 hypothetical protein; Validated
Probab=84.02 E-value=4.4 Score=35.02 Aligned_cols=56 Identities=7% Similarity=-0.096 Sum_probs=40.1
Q ss_pred EEeecCCCCHHHHHHhhhcccccc-e----EEEEEcCEEeeccccccCCCCeEE---eeCCChhH
Q 007503 94 KEGKRWETSPMDIAQGISKSLAAN-A----LISMVNGVLWDMTRPLEADCDLKL---FTFDSDEG 150 (601)
Q Consensus 94 ~~~~~~~tt~~dia~~i~~~~~~~-~----v~a~Vng~l~dL~~~l~~d~~le~---l~~~~~eG 150 (601)
.+++. |+|..|+++..+-....+ + ...-|||+..+++++|..+..|++ |+.|-.+.
T Consensus 21 l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL~~DPk~~ 84 (95)
T PRK01777 21 LTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPLLADPKEL 84 (95)
T ss_pred EEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCCCCCHHHH
Confidence 44555 999999998876322211 2 355689999999999999999997 44554443
No 117
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=81.35 E-value=3.2 Score=33.93 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.3
Q ss_pred CCCHHHHHHhhhcccc------cceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 100 ETSPMDIAQGISKSLA------ANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~------~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|+.|+.+.+...++ ...+++-|||+.++.+.+|..+.+|.++..
T Consensus 25 ~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 25 GATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 6799999988875432 457788899999999999999999998764
No 118
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=80.97 E-value=2.5 Score=34.79 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=40.9
Q ss_pred EEEeecCCCCHHHHHHhhhcccccceEEEEE-------cCEEeeccccccCCCCeEEee
Q 007503 93 VKEGKRWETSPMDIAQGISKSLAANALISMV-------NGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 93 ~~~~~~~~tt~~dia~~i~~~~~~~~v~a~V-------ng~l~dL~~~l~~d~~le~l~ 144 (601)
.+..+. |+|+.|+|..+.....+....|.| +|+.+.++++|.....|++++
T Consensus 18 ~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 18 PVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 355556 999999999998766666666664 899999999999988888763
No 119
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=79.47 E-value=1.3 Score=46.87 Aligned_cols=170 Identities=21% Similarity=0.303 Sum_probs=92.1
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccCC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLG 393 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG 393 (601)
++|++++++-.|||.|+.-.- .++--++-+-+-+++.+-..|.= -+.+.-+|++|||+ |+++-.....+
T Consensus 205 ~~PlklFSIDRCFRREQ~ED~---shLmtYhSASCVvvde~vtvD~G----KaVAEglL~qfGFe~F~FrpDEK~SK--- 274 (536)
T COG2024 205 DPPLKLFSIDRCFRREQREDA---SHLMTYHSASCVVVDEDVTVDDG----KAVAEGLLRQFGFEKFRFRPDEKKSK--- 274 (536)
T ss_pred CCCceeeehhHHhhhhhhcch---hhhhhhccceEEEEcCccccccc----HHHHHHHHHHhCccceeecccccccc---
Confidence 679999999999999987642 34556666777666655333332 34566789999998 87653110000
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCccccCCCCc-c--cccchhhhHHHHHhhhhh-hcceeeccCCCcccceeEeecCCCCc
Q 007503 394 DLATWEKAEAALTEALNEFGKPWQINEGDGA-F--YGPKIDISVSDALKRKFQ-CATLQLDFQLPDRFNLGYSAEDEAKT 469 (601)
Q Consensus 394 ~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~a-f--~gpki~~~~~d~l~~~~~-~~ti~ld~~l~~~~~L~Y~t~~~g~~ 469 (601)
| --|+.+. . |-||+..... ..+..|- .+| |++-...-|.-| +-
T Consensus 275 ----------------------Y-YvP~TQTEVyAyHPkL~gs~~-kysdgWiEiAT----FGlYSP~ALaeY-----~I 321 (536)
T COG2024 275 ----------------------Y-YVPGTQTEVYAYHPKLVGSIE-KYSDGWIEIAT----FGLYSPIALAEY-----GI 321 (536)
T ss_pred ----------------------c-cCCCccceEEEeccccccccc-ccCCCcEEEEe----ecccChHHHHHc-----CC
Confidence 0 1133221 1 2466543322 1222231 222 222111112222 13
Q ss_pred ccceEEeccccccHHHHHHHHHHhc------CCCCCCC-CCCc------eEEEEecCCCcHHHHHHHHHHHHHc
Q 007503 470 ERPVMIHRAILGSVERMFAILLEHY------KGKWPFW-LSPR------QAIVCPVSEKSQPYALQVRDHIYRA 530 (601)
Q Consensus 470 ~~P~~i~~ai~GGveRli~iL~E~~------~g~~p~~-lsp~------qv~Vip~~~~~~~~A~~i~~~Lr~~ 530 (601)
+.||| ..++ |+||+..+|-..- ....+.| +|-. .|--+|...+-...|.+|.+.+++.
T Consensus 322 d~pVM-NLGl--GVERlaMIl~g~~DVR~mvYpqi~ew~lSD~diA~mi~v~~~P~t~~g~~~a~~vV~~~~~h 392 (536)
T COG2024 322 DYPVM-NLGL--GVERLAMILHGADDVRSMVYPQIYEWRLSDRDIARMIRVDKVPATSEGRRLAREVVRTCEAH 392 (536)
T ss_pred CCcee-ecch--hHHHHHHHHhCchHHhhhhcccccccccchHHHHhhhhhccccCChHHHHHHHHHHHHHHHh
Confidence 46774 5778 9999998883110 0123344 3332 2334566666777788888888764
No 120
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=79.07 E-value=3.7 Score=45.66 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=48.4
Q ss_pred CceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEE
Q 007503 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (601)
Q Consensus 316 lplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~l 384 (601)
-|.+++++|.+||++.--+ ..+-+|||.+.=+++.. ..-.. ++.++.++++.+|+. ++++-
T Consensus 341 ~p~k~fsigrVfR~d~iDa----tH~~eFhQ~EG~vvd~~-~t~~~---L~g~l~~f~~~lg~~~~RfrP 402 (492)
T PLN02853 341 KPKRYFSIDRVFRNEAVDR----THLAEFHQVEGLVCDRG-LTLGD---LIGVLEDFFSRLGMTKLRFKP 402 (492)
T ss_pred CCcEEEeccceecCCCCCc----ccCccceeEEEEEEeCC-CCHHH---HHHHHHHHHHHcCCceEEEec
Confidence 5899999999999998777 88999999998887643 23333 788999999999984 44443
No 121
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=77.49 E-value=4.9 Score=33.20 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=38.3
Q ss_pred EEeecCCCCHHHHHHhhhcccccce---EEEEEcCEEeeccccccCCCCeEEee
Q 007503 94 KEGKRWETSPMDIAQGISKSLAANA---LISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 94 ~~~~~~~tt~~dia~~i~~~~~~~~---v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
...+. |+|+.|+|..+.....+.. +.++ |++...++++|.+...+++++
T Consensus 25 ~~l~~-GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 25 FLLPK-GSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred EEECC-CCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 33444 8999999999877665553 4456 999999999999988888874
No 122
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=77.35 E-value=5.1 Score=32.36 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=39.5
Q ss_pred CCCHHHHHHhhhcccc----cceEEEEEcCEEeec---cccccCCCCeEEeeC
Q 007503 100 ETSPMDIAQGISKSLA----ANALISMVNGVLWDM---TRPLEADCDLKLFTF 145 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~----~~~v~a~Vng~l~dL---~~~l~~d~~le~l~~ 145 (601)
++|+.++.+.+...++ ...++..|||++.+. +.+|..+.+|.++..
T Consensus 21 ~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 21 GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred CCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 8899999999987664 267888899999998 999999999998864
No 123
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=76.20 E-value=2.9 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=30.3
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. .|--||+|.|+|.-..+
T Consensus 207 ervfqI~~~FR~E~~~t----~r~pEFT~le~E~af~d 240 (583)
T TIGR00459 207 DRYYQIARCFRDEDLRA----DRQPEFTQIDMEMSFMT 240 (583)
T ss_pred CcEEEEcceeeCCCCCC----CCCcccCcceeeecCCC
Confidence 38999999999999988 78899999999977664
No 124
>PLN02903 aminoacyl-tRNA ligase
Probab=75.75 E-value=3.2 Score=47.85 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=30.1
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.++. -|--||+|.|+|.-..+
T Consensus 273 ~RvFqIa~~FR~E~~~t----~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 273 DRYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTP 306 (652)
T ss_pred CcEEEEehhhccCCCCC----CcccceeeeeeeecCCC
Confidence 47999999999999988 68899999999977664
No 125
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.35 E-value=5.4 Score=44.68 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=51.6
Q ss_pred CCCCCcceeeccccccchhhhhhhc--cCceeeeeeccccccccCCCCCCceeeeeeeecCeEE-EecCchhHHHHHHHH
Q 007503 290 KDRESLQRVYGISYPDKKRLKHAFA--ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (601)
Q Consensus 290 ~~~~~l~ri~g~~fp~~~~l~~s~r--elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~ei-fg~~~~~d~Ei~~~i 366 (601)
|+.-.+-.+| +.|.+|+|+.-.- .--=|++++..|||.|...+ =|.=||+|.|+|+ |++.+.+-.- +=
T Consensus 182 PSRv~~G~FY--ALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRa----DRQPEFTQiD~EmSF~~~edv~~~---~E 252 (585)
T COG0173 182 PSRVHPGKFY--ALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRA----DRQPEFTQIDLEMSFVDEEDVMEL---IE 252 (585)
T ss_pred ccccCCCcee--ecCCCHHHHHHHHHHhcccceeeeeeeeccccccc----ccCCcceeEeEEeecCCHHHHHHH---HH
Confidence 3344455566 7888888765221 00137899999999999987 7999999999997 4443332222 22
Q ss_pred HHHHHHHHH-hCcE
Q 007503 367 EFIDYAYRI-FGFT 379 (601)
Q Consensus 367 ~~~~~~l~~-lG~~ 379 (601)
.++..+++. .|++
T Consensus 253 ~l~~~vf~~~~~i~ 266 (585)
T COG0173 253 KLLRYVFKEVKGIE 266 (585)
T ss_pred HHHHHHHHHhcCCc
Confidence 355556653 3443
No 126
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=74.74 E-value=6 Score=32.76 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=35.8
Q ss_pred CCCHHHHHHhhhccc---cc--ceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 100 ETSPMDIAQGISKSL---AA--NALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 100 ~tt~~dia~~i~~~~---~~--~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|+.++.+.+...+ .. ..++.-||++..+.+.+|..+.+|.++..
T Consensus 28 ~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 28 GSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPP 78 (82)
T ss_pred CCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCC
Confidence 788999988875433 11 34566799999999999999999998763
No 127
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=74.29 E-value=4.3 Score=43.14 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=29.6
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=+++++|++||+|.++. -..-||+|.|+|.-..+
T Consensus 77 ~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~ 110 (329)
T cd00775 77 ERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYAD 110 (329)
T ss_pred CcEEEEeccccCCCCCC----CCCCceEEEEEeeecCC
Confidence 48999999999999976 67889999999977654
No 128
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=72.82 E-value=3.9 Score=46.94 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=29.1
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.+.. .|--||+|.|+|.-..+
T Consensus 210 ~rvfqi~~~FR~E~~~~----~r~~EFt~le~e~af~~ 243 (588)
T PRK00476 210 DRYYQIARCFRDEDLRA----DRQPEFTQIDIEMSFVT 243 (588)
T ss_pred CceEEEeceeecCCCCC----CcCcccccceeeecCCC
Confidence 48999999999999776 56669999999987765
No 129
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=72.64 E-value=4.2 Score=43.03 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=29.2
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
=+++++|++||+|.+..- -..-||+|.|+|..+.++
T Consensus 90 ~~vf~i~~~FR~E~~~~~---rHl~EFtmlE~e~~~~~~ 125 (322)
T cd00776 90 ERVYEIGPVFRAEKSNTR---RHLSEFWMLEAEMAFIED 125 (322)
T ss_pred hhhEEeccccccCCCCcC---CCcceeeccceeeeccCC
Confidence 479999999999986430 358999999999988743
No 130
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=72.14 E-value=6.1 Score=43.58 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=28.1
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.+.. .| .-||+|.|+|.-..+
T Consensus 200 ~rVf~i~~~FR~E~~~t----~rHl~EFt~lE~e~a~~~ 234 (428)
T TIGR00458 200 ERVYEIGPIFRAEEHNT----HRHLNEATSIDIEMAFED 234 (428)
T ss_pred CcEEEEecccccCCCCC----ccchheeeEeeeeeccCC
Confidence 48999999999999874 23 579999999977654
No 131
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=72.08 E-value=6.2 Score=41.85 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=35.3
Q ss_pred eeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHH
Q 007503 318 LRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDY 371 (601)
Q Consensus 318 lr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~ 371 (601)
=+++++|.+||+|.+ +. .-.-||+|.|+|.-+.+.. .-..+.+++..+..
T Consensus 94 ~~vf~i~~~FR~E~~~~~----rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~ 145 (335)
T PF00152_consen 94 ERVFEIGPCFRNEESRTR----RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFK 145 (335)
T ss_dssp SEEEEEEEEE-BSSSCBT----TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhheecceeccCcccc----cchhhhhhhhhccccCcHHHhHHHHHHHHHHHHH
Confidence 479999999999998 44 4577999999999876654 44444344444443
No 132
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=68.97 E-value=26 Score=35.32 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHH
Q 007503 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQ 551 (601)
Q Consensus 484 eRli~iL~E~~~g~~p~~lsp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~ 551 (601)
+.|+.+..+ +.|.||.++|-.. ...+....+.+.|+++||+|.+.... -..+++.|.
T Consensus 73 ~emi~ia~~---------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~ 141 (237)
T TIGR00559 73 EEMIRIAEE---------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAAA 141 (237)
T ss_pred HHHHHHHHH---------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHH
Confidence 455665544 3578999999753 24566778999999999999998643 367999999
Q ss_pred hcCCcEEEE
Q 007503 552 LAQYNFILV 560 (601)
Q Consensus 552 ~~g~~~iiv 560 (601)
..|++++=+
T Consensus 142 ~~GAd~VEL 150 (237)
T TIGR00559 142 EVGADRIEI 150 (237)
T ss_pred HhCcCEEEE
Confidence 999997744
No 133
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=67.27 E-value=6.1 Score=46.14 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=29.8
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. -|.-||+|.|+|.-..+
T Consensus 225 ~rvfqI~~~FR~E~~~t----~r~pEFT~LE~E~af~d 258 (706)
T PRK12820 225 ERYFQLARCFRDEDLRP----NRQPEFTQLDIEASFID 258 (706)
T ss_pred CcEEEEechhcCCCCCC----CcCccccccceeeccCC
Confidence 47999999999999988 67899999999976654
No 134
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=64.76 E-value=36 Score=34.27 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEE
Q 007503 502 LSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILV 560 (601)
Q Consensus 502 lsp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iiv 560 (601)
+.|.||.++|-.. ...+....+.+.|+++|++|.+.... -..+++.|.+.|++.+=+
T Consensus 82 ~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VEL 150 (234)
T cd00003 82 VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVEL 150 (234)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEE
Confidence 4678999999753 24567788999999999999987743 367999999999997644
No 135
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=64.14 E-value=24 Score=27.49 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=40.0
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 85 ~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
+|.+ +|+.+.... ++|++++.+.+.+. +=+..+||-...=+.+|..+.+|-|+.
T Consensus 2 ~I~v-N~k~~~~~~-~~tl~~lr~~~k~~----~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 2 KIKV-NEKEIETEE-NTTLFELRKESKPD----ADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred EEEE-CCEEEEcCC-CcCHHHHHHhhCCC----CCEEEEcCcccCCccccCCCCEEEEEe
Confidence 4566 677777665 89999999987653 224468998888888888877777763
No 136
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=62.30 E-value=37 Score=34.27 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=45.4
Q ss_pred CCCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEE
Q 007503 502 LSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILV 560 (601)
Q Consensus 502 lsp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iiv 560 (601)
+.|.||.++|-.. ...+....+.+.|+++||+|.+... .-..+++.|.+.|++.+=+
T Consensus 85 ~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VEL 153 (239)
T PRK05265 85 VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIEL 153 (239)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEE
Confidence 3678999999753 2456677899999999999999773 3456899999999997744
No 137
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=62.25 E-value=38 Score=34.25 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHH
Q 007503 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQ 551 (601)
Q Consensus 484 eRli~iL~E~~~g~~p~~lsp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~ 551 (601)
+.|+.+..+. .|.||.++|-.. ...+....+.++|+++|++|.+.... -..+++.|.
T Consensus 74 ~e~~~ia~~~---------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP--~~~qi~~A~ 142 (239)
T PF03740_consen 74 EEMVDIALKV---------KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP--DPEQIEAAK 142 (239)
T ss_dssp HHHHHHHHHH-----------SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHH
T ss_pred HHHHHHHHhC---------CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC--CHHHHHHHH
Confidence 5566655443 577999999753 24677788999999999999997742 367999999
Q ss_pred hcCCcEEEE
Q 007503 552 LAQYNFILV 560 (601)
Q Consensus 552 ~~g~~~iiv 560 (601)
+.|++++=+
T Consensus 143 ~~Gad~VEL 151 (239)
T PF03740_consen 143 ELGADRVEL 151 (239)
T ss_dssp HTT-SEEEE
T ss_pred HcCCCEEEE
Confidence 999997643
No 138
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=62.17 E-value=11 Score=42.52 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=29.5
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.+.. -..-||+|.|+|.-..+
T Consensus 241 ~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~~d 274 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAYAD 274 (491)
T ss_pred CcEEEEecceecCCCCC----CcCCceEEEEEEEecCC
Confidence 38999999999999986 78899999999976553
No 139
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=60.82 E-value=17 Score=38.68 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=45.1
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHh-CcEEEEEE
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~l-G~~~~l~l 384 (601)
...|+++..+|.+||.+...+ ....+|+|.+.=+++.. ..-++ +...+..+++.+ |=..++++
T Consensus 182 ~~~Pirif~~G~VyR~D~~Da----tH~~~FhQleglvvd~~-vtf~d---LK~~L~~fl~~~fg~~~~~R~ 245 (339)
T PRK00488 182 QKPPIRIIAPGRVYRNDSDDA----THSPMFHQVEGLVVDKN-ISFAD---LKGTLEDFLKAFFGEDVKIRF 245 (339)
T ss_pred cCCCeEEEEeeeEEEcCCCCc----ccCcceeeEEEEEEeCC-CCHHH---HHHHHHHHHHHHcCCCCeEEe
Confidence 568999999999999998666 78999999888777653 24455 455666666665 52234443
No 140
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=57.97 E-value=9.6 Score=41.79 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=30.4
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~eifg~~ 355 (601)
=|++++|+.||.|.+.. -| +-||||.|+|+-..+
T Consensus 200 ~rVf~igP~FRAE~s~T----~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 200 ERVFTIGPTFRAEKSNT----RRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred CceEEecCceecCCCCC----cchhhhHheecceeccCc
Confidence 38999999999999997 56 899999999997766
No 141
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=57.91 E-value=14 Score=39.22 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=45.7
Q ss_pred ceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhC-cEEEEEE
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG-FTYELKL 384 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG-~~~~l~l 384 (601)
|+|+..+|.+||++.... +-.-+|+|.+-=+++ .+..-+. +..++.++++.|+ .+.++++
T Consensus 192 P~k~~~~grvyR~D~~Da----THs~~FhQiEGlvvd-~~~s~~~---Lkg~L~~f~~~~fg~~~~vRf 252 (335)
T COG0016 192 PIKIFSPGRVYRNDTVDA----THSPEFHQIEGLVVD-KNISFAD---LKGTLEEFAKKFFGEDVKVRF 252 (335)
T ss_pred CceEecccceecCCCCCc----ccchheeeeEEEEEe-CCccHHH---HHHHHHHHHHHhcCCCcceEe
Confidence 999999999999998877 889999999884443 3434344 6788888998887 4444444
No 142
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=56.81 E-value=27 Score=28.65 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhhcccc-----cceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSLA-----ANALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~-----~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
++|..++...+...++ ...+..-||++..+.+.+|..+.+|.++-
T Consensus 26 ~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 26 STTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred CcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 4788999888865442 14466779999999999999998998864
No 143
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=54.44 E-value=5.2 Score=42.04 Aligned_cols=34 Identities=12% Similarity=-0.032 Sum_probs=28.9
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.++. -..-||+|.|++..+.+
T Consensus 74 ~rVfeigp~FRaE~~~~----rHl~EFtmLE~e~~~~d 107 (304)
T TIGR00462 74 GPIFQICKVFRNGERGR----RHNPEFTMLEWYRPGFD 107 (304)
T ss_pred CCEEEEcCceeCCCCCC----CcccHHHhHHHHHHcCC
Confidence 48999999999999965 56889999999976654
No 144
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=53.05 E-value=20 Score=37.37 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=40.4
Q ss_pred CceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE
Q 007503 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (601)
Q Consensus 316 lplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~ 379 (601)
.|++++++|.+||.+.... .+..||+|.++-+.+. +..-.+ +...+..++..+|++
T Consensus 149 ~pirlFEiGrVfr~d~~d~----~~~pef~ql~gl~~~~-~~~f~d---LKg~le~ll~~l~~~ 204 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTVDA----THLPEFHQVEGLVIDK-NVSFTN---LKGFLEEFLKKMFGE 204 (294)
T ss_pred CCceEEEecceEEcCCCCC----ccCChhhEEEEEEECC-CCCHHH---HHHHHHHHHHHhCCC
Confidence 6899999999999876433 3455999988776662 223444 566777788888885
No 145
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=52.36 E-value=16 Score=41.12 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.7
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.... -..-||+|.|+|.-..+
T Consensus 253 ~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d 286 (505)
T PRK12445 253 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYAD 286 (505)
T ss_pred CcEEEEehhccCCCCCC----CcCcccceeeeeeecCC
Confidence 37999999999999865 67899999999988664
No 146
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=52.09 E-value=18 Score=40.18 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=27.3
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. . --.-||+|.|+|.-..+
T Consensus 208 ~rVf~i~~~FR~E~~~t-~--rHl~EFt~lE~e~~~~~ 242 (450)
T PRK03932 208 GKVYTFGPTFRAENSNT-R--RHLAEFWMIEPEMAFAD 242 (450)
T ss_pred CCeEEeeeccccCCCCC-c--cccccccccceEEeccC
Confidence 47999999999998732 0 23679999999976554
No 147
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=50.25 E-value=18 Score=41.94 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|+|++|.+||+|.+.. -..-||+|.|+|....+
T Consensus 302 erVyeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d 335 (659)
T PTZ00385 302 ERIYEIGKVFRNEDADR----SHNPEFTSCEFYAAYHT 335 (659)
T ss_pred CCEEEEeceecCCCCCC----CccccccceeeeeecCC
Confidence 37999999999999986 67899999999977664
No 148
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=49.69 E-value=19 Score=39.87 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=38.9
Q ss_pred ceeeccccccchhhhh-hhccCc-eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 296 QRVYGISYPDKKRLKH-AFAELP-LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 296 ~ri~g~~fp~~~~l~~-s~relp-lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
-.+| +.|..++.+. ..-.-- =|+++++.|||.|.... =|.=||+|.|+|.--++.
T Consensus 226 g~FY--aLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~----DRQPEFTQvD~EMsF~~~ 282 (628)
T KOG2411|consen 226 GKFY--ALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRA----DRQPEFTQVDMEMSFTDQ 282 (628)
T ss_pred Ccee--ecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCc----ccCCcceeeeeEEeccCH
Confidence 3455 6777776533 111111 36889999999999887 799999999999855543
No 149
>PRK06462 asparagine synthetase A; Reviewed
Probab=49.35 E-value=18 Score=38.62 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=29.0
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.++.-+ --..-||+|.|+|.-+.+
T Consensus 103 ~rVfeI~p~FR~E~~~~~~-~rHl~EFtmlE~e~~~~d 139 (335)
T PRK06462 103 GKIFYLSPNFRLEPVDKDT-GRHLYEFTQLDIEIEGAD 139 (335)
T ss_pred CcEEEEeccccCCCCCCCC-CCCCCchheeeehhhcCC
Confidence 4799999999999986411 135889999999977754
No 150
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=49.12 E-value=18 Score=40.26 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=27.6
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+..- --.-||+|.|+|.-..+
T Consensus 211 ~rVf~i~~~FR~E~~~t~---rHl~EFt~le~e~~~~~ 245 (453)
T TIGR00457 211 SKVYTFGPTFRAEKSNTS---RHLSEFWMIEPEMAFAN 245 (453)
T ss_pred cCceEeeeccccCCCCCC---cCcchhccceeeeecCC
Confidence 479999999999988740 23579999999976554
No 151
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=48.58 E-value=84 Score=25.88 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.8
Q ss_pred CCCHHHHHHhhhcccc-------cceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSLA-------ANALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~-------~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
++|+.++...+...++ ...+..-||+++.+++.+|..+.+|.++-
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 5788888777754331 23345668999999999999988888763
No 152
>PLN02502 lysyl-tRNA synthetase
Probab=48.15 E-value=16 Score=41.54 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=29.3
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. ...-||+|.|+|.-..+
T Consensus 298 ~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d 331 (553)
T PLN02502 298 ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYAD 331 (553)
T ss_pred CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCC
Confidence 47999999999999876 77899999999966554
No 153
>PLN02850 aspartate-tRNA ligase
Probab=47.41 E-value=14 Score=41.94 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=27.1
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeE-EEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~e-ifg~~ 355 (601)
=|++++|++||+|.+..- --+-||+|.|+| -|+.+
T Consensus 292 ~rVfeIgp~FRaE~s~t~---RHl~EFt~Le~Em~~~~~ 327 (530)
T PLN02850 292 RRVFEIGPVFRAEDSFTH---RHLCEFTGLDLEMEIKEH 327 (530)
T ss_pred CceEEEecccccCCCCCC---ccchhhccchhhhhhhcC
Confidence 379999999999996430 236799999999 56643
No 154
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=46.60 E-value=26 Score=40.18 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|..+. ...=||+|.|++.-..+
T Consensus 322 ~rVfeIgp~FRnE~~~~----rHnpEFTmlE~y~ay~d 355 (585)
T PTZ00417 322 DKVYEIGKVFRNEGIDN----THNPEFTSCEFYWAYAD 355 (585)
T ss_pred CCEEEEcccccCCCCCC----CccceeeeeeeeeecCC
Confidence 37999999999999886 67889999999976654
No 155
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=46.20 E-value=80 Score=29.69 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhCC--c-eEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh
Q 007503 155 WHSSAHILGQAIEQQYGC--K-LCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA 213 (601)
Q Consensus 155 ~hS~~hlL~~A~~~~fg~--~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii 213 (601)
-||+-||++.-++..... + +-++| .+=-.|||.-+. +.+-+++-++.+++.|++++
T Consensus 53 iHTlEHL~A~~iRnh~~g~~~iID~SP-MGCrTGFYm~l~--G~~~~~~i~~~~~~~m~dvl 111 (161)
T COG1854 53 IHTLEHLLAGFIRNHLNGNVEIIDISP-MGCRTGFYMILI--GTPTSQDIADVLEATMKDVL 111 (161)
T ss_pred hhhHHHHHHHHHHhcccCceeEEEecC-cccccceEEEEE--CCCCHHHHHHHHHHHHHHHH
Confidence 699999999999998833 2 33344 331259998774 44445555778888888777
No 156
>PLN02221 asparaginyl-tRNA synthetase
Probab=46.02 E-value=22 Score=40.70 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=26.8
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEe
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFC 353 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg 353 (601)
=|+|++|+.||+|.+..- --+-||+|.|+|+-.
T Consensus 327 ~rVfeIgP~FRAE~s~T~---RHL~EFtmlE~Emaf 359 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTS---RHLAEFWMVEPEIAF 359 (572)
T ss_pred CCeEEEccceecCCCCCC---cccccccceeeeeec
Confidence 489999999999998530 248899999999653
No 157
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=45.75 E-value=24 Score=39.04 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=28.2
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. .| .-||+|.|+|.-+.+
T Consensus 203 ~rVf~i~~~FR~E~~~t----~rHl~EFt~lE~e~a~~~ 237 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNT----SRHLNEYTSIDVEMGFID 237 (437)
T ss_pred CcEEEEeceeeCCCCCC----cccchhhheeeeeeeecc
Confidence 47999999999999974 34 569999999976654
No 158
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=44.84 E-value=19 Score=40.54 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=29.1
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.+.. ...-||+|.|+|.-..+
T Consensus 241 ~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYAD 274 (496)
T ss_pred CceEEEecceecCCCCC----cccchhheeehhhhcCC
Confidence 37999999999999876 67889999999976554
No 159
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=44.38 E-value=64 Score=26.53 Aligned_cols=44 Identities=20% Similarity=0.063 Sum_probs=36.9
Q ss_pred CCCHHHHHHhhhcccccceEEEEEcC-EEeeccccccCCCCeEEe
Q 007503 100 ETSPMDIAQGISKSLAANALISMVNG-VLWDMTRPLEADCDLKLF 143 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~~~~v~a~Vng-~l~dL~~~l~~d~~le~l 143 (601)
++|+.|+|..|.....+...-|.|-| +...+++.|+...-++++
T Consensus 31 g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~ 75 (76)
T cd04938 31 GTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFK 75 (76)
T ss_pred CCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEE
Confidence 89999999999988888888888876 778888888776667665
No 160
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=44.08 E-value=39 Score=33.49 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=40.6
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG 377 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG 377 (601)
..+++++++|.+||.+..+. .+..||+|.++-+.|.+. ...+ +...+..+++.+|
T Consensus 78 ~~~~~lFEiG~Vf~~~~~~~----~~~~E~~~l~~~~~g~~~-df~d---lkg~ve~ll~~l~ 132 (218)
T cd00496 78 KPPIRIFSIGRVYRNDEIDA----THLPEFHQIEGLVVDKGL-TFAD---LKGTLEEFAKELF 132 (218)
T ss_pred CCCeeEEEEcCeEECCCCCC----CcCCccEEEEEEEECCCC-CHHH---HHHHHHHHHHHhc
Confidence 46899999999998875432 235599999999988432 3444 5667777788888
No 161
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=43.70 E-value=17 Score=41.31 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=27.3
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEE-EecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHI-FCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~ei-fg~~ 355 (601)
=|++++|.+||+|.++. -| .-||+|.|+|. |+.+
T Consensus 280 ~rVfeI~p~FRaE~s~T----~RHl~EFt~Le~E~~~~~~ 315 (550)
T PTZ00401 280 PRVFEVGPVFRSENSNT----HRHLTEFVGLDVEMRINEH 315 (550)
T ss_pred CCEEEEeCeEeCCCCCC----CCCccchhhhhhhhHhcCC
Confidence 37999999999999874 24 56999999985 5544
No 162
>PLN02532 asparagine-tRNA synthetase
Probab=41.63 E-value=27 Score=40.34 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=27.9
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|+|+||+.||+|.+..- --+-||||.|+|+-..+
T Consensus 390 ~rVYeIgP~FRAE~s~T~---RHL~EFtmlE~Emaf~d 424 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSA---RHLAEMWMVEVEMAFSE 424 (633)
T ss_pred CceEEEccceecCCCCCC---cccccccceeeeehhcC
Confidence 389999999999999740 23889999999965443
No 163
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=41.31 E-value=34 Score=39.19 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=27.6
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||.|.+.. -| +-||+|.|+|+-..+
T Consensus 344 ~rVf~i~p~FRaE~s~t----~RHL~EFt~lE~E~af~d 378 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHT----SRHLAEFWMIEPEIAFAD 378 (586)
T ss_pred CCEEEEeceEeCCCCCC----CCCCcccceEEEEEecCC
Confidence 47999999999999864 24 579999999975443
No 164
>PLN02603 asparaginyl-tRNA synthetase
Probab=40.01 E-value=37 Score=38.86 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.0
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEEEec
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCR 354 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~eifg~ 354 (601)
=+++++|++||+|.+.. -| +-||||.|+|+-..
T Consensus 322 ~rVy~igp~FRaE~s~T----~RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 322 SDVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFA 355 (565)
T ss_pred cceEEEecceeCCCCCC----ccccccceeeeeeeecC
Confidence 36999999999999964 34 67999999997443
No 165
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=39.52 E-value=97 Score=29.06 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeCCC---CcHHHHHHHHHhcCCcEEEEEccc
Q 007503 516 SQPYALQVRDHIYRAGYYVDVDTTD---RKIQKKVREAQLAQYNFILVVGEE 564 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~Gi~v~~d~~~---~~l~kki~~A~~~g~~~iivvG~~ 564 (601)
..+.|..+.+.|++.|+.|.+.-.+ .++.++.+.|+..++.+.|-+--+
T Consensus 26 ~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~n 77 (175)
T PF01520_consen 26 NLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFN 77 (175)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeec
Confidence 3566888899999999999886543 379999999999999999987544
No 166
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=39.00 E-value=1.3e+02 Score=31.56 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=45.7
Q ss_pred eEEEeCCCcEEEe-ecCCCCHHHHHHhhhccc-------------ccceEEEEEcCEE---eeccccccCCCCeEEeeCC
Q 007503 84 IKITLPDGSVKEG-KRWETSPMDIAQGISKSL-------------AANALISMVNGVL---WDMTRPLEADCDLKLFTFD 146 (601)
Q Consensus 84 I~v~l~dg~~~~~-~~~~tt~~dia~~i~~~~-------------~~~~v~a~Vng~l---~dL~~~l~~d~~le~l~~~ 146 (601)
++|++ ||+.+++ ++ ++|++|.|+..+... +=++.++.|+|.- -.-..|+..+-.|. .+
T Consensus 69 ~~I~I-DGk~VeV~~~-G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~---T~ 143 (297)
T PTZ00305 69 AIMFV-NKRPVEIIPQ-EENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII---TD 143 (297)
T ss_pred eEEEE-CCEEEEecCC-CChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE---eC
Confidence 55565 8999998 66 999999998865321 1134666777742 23455555544333 35
Q ss_pred ChhHHHHHHHHHHHHHH
Q 007503 147 SDEGRDTFWHSSAHILG 163 (601)
Q Consensus 147 ~~eG~~vy~hS~~hlL~ 163 (601)
++.-++.-+..+.+||.
T Consensus 144 Se~v~~~Rk~vLElLLs 160 (297)
T PTZ00305 144 SRLVRDAREGNVELILI 160 (297)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 66555555555555544
No 167
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=36.28 E-value=1.1e+02 Score=25.39 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCHHHHHHhhhccccc-------------ceEEEEEcCEEeeccc--cccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSLAA-------------NALISMVNGVLWDMTR--PLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~~-------------~~v~a~Vng~l~dL~~--~l~~d~~le~l~ 144 (601)
++|..|+.+.+...++. +.+...|||+..+-.. +|..+.+|.++.
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 68999998888654431 2366779999876555 999988888764
No 168
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=32.50 E-value=94 Score=28.41 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=38.3
Q ss_pred eEEEEecCC--CcHHHHHHHHHHHHHc-CCEEEEeCCCC------cHHHHHHHHHhcCCcEEEEEcc
Q 007503 506 QAIVCPVSE--KSQPYALQVRDHIYRA-GYYVDVDTTDR------KIQKKVREAQLAQYNFILVVGE 563 (601)
Q Consensus 506 qv~Vip~~~--~~~~~A~~i~~~Lr~~-Gi~v~~d~~~~------~l~kki~~A~~~g~~~iivvG~ 563 (601)
.|+|+...+ ++.+...++|+.||+. |+.|.+|.-.. ... +.-..+...+.++|||=.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~-~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPP-RWMERQIREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHH-HHHHHHHhcCCEEEEEec
Confidence 466665443 3556689999999999 99999996221 222 233334667888888865
No 169
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=32.22 E-value=1.1e+02 Score=30.49 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEE
Q 007503 503 SPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILV 560 (601)
Q Consensus 503 sp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iiv 560 (601)
.|-+|.++|-.. ...+....+.++|.+.|++|.+... .-..+|..|...|++++=+
T Consensus 84 kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IEL 151 (243)
T COG0854 84 KPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIEL 151 (243)
T ss_pred CCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEE
Confidence 577999999653 1245567788999999999998764 3456899999999998754
No 170
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=31.06 E-value=1.6e+02 Score=25.20 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCEEEEeCC-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCC-CceecccHHHHHHHHHHH
Q 007503 519 YALQVRDHIYRAGYYVDVDTT-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQ-GDHSNMSIEDLLKHFKEK 596 (601)
Q Consensus 519 ~A~~i~~~Lr~~Gi~v~~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~-~~q~~v~l~el~~~l~~~ 596 (601)
.+..+.+.+.+.|+.+.+... ...+...+...+...+.++|++|+.+.+. .|-. ..-...++++.+..-...
T Consensus 17 aa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~------~rf~gk~v~~~~~~~~l~~~~~v 90 (96)
T cd05569 17 AAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD------ERFAGKRVYEVSVAEAIKDAEAV 90 (96)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch------hhhCCCeEEEecHHHHHHHHHHH
Confidence 356777888889999998864 34455666667777899999999887544 2333 344566777777655444
Q ss_pred H
Q 007503 597 L 597 (601)
Q Consensus 597 ~ 597 (601)
+
T Consensus 91 l 91 (96)
T cd05569 91 I 91 (96)
T ss_pred H
Confidence 4
No 171
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.76 E-value=3e+02 Score=25.05 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=35.1
Q ss_pred eEEEEecCC-CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEc
Q 007503 506 QAIVCPVSE-KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVG 562 (601)
Q Consensus 506 qv~Vip~~~-~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG 562 (601)
.+++..++. .+..-+.-++..|+.+||.|...-...+...-++.|.+.++..+.+-+
T Consensus 4 ~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 4 RILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred EEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 455554443 344445556667778888776544456677777777777777666543
No 172
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=30.12 E-value=1.6e+02 Score=27.73 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=39.5
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHH---HHHHHHhcCCcEEEEE
Q 007503 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQK---KVREAQLAQYNFILVV 561 (601)
Q Consensus 506 qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~k---ki~~A~~~g~~~iivv 561 (601)
+|.|+.-+......+.+.+..|++.|+.+++... .++..+ -+++++..|+..+|.+
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEE
Confidence 5788877777889999999999999999888763 356554 4444455577655544
No 173
>PLN03194 putative disease resistance protein; Provisional
Probab=29.50 E-value=2.7e+02 Score=27.17 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=42.7
Q ss_pred CCceEEEEecCCCc-HHHHHHHHHHHHHcCCEEEEeCC----CCcHHHHHHHHHhcCCcE-EEEEcccc
Q 007503 503 SPRQAIVCPVSEKS-QPYALQVRDHIYRAGYYVDVDTT----DRKIQKKVREAQLAQYNF-ILVVGEEE 565 (601)
Q Consensus 503 sp~qv~Vip~~~~~-~~~A~~i~~~Lr~~Gi~v~~d~~----~~~l~kki~~A~~~g~~~-iivvG~~E 565 (601)
.++||+|---+++. ...+..+++.|+.+||+|-+|.. +..+...+..|-.. .++ ++|+.++-
T Consensus 25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIee-Sri~IvVfS~~Y 92 (187)
T PLN03194 25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRN-CKVGVAVFSPRY 92 (187)
T ss_pred CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHh-CeEEEEEECCCc
Confidence 46788887656553 45688999999999999999873 56666666666433 444 44455543
No 174
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=29.30 E-value=2.5e+02 Score=26.15 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=35.6
Q ss_pred CceEEEEecCC-CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEE
Q 007503 504 PRQAIVCPVSE-KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFI 558 (601)
Q Consensus 504 p~qv~Vip~~~-~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~i 558 (601)
.++|+|.+++- .+..-+.-+++.|++.||.|...-.-.+...-++.|....+..+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vI 67 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVI 67 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEE
Confidence 34677877763 45555677888888888888776555566666666644444433
No 175
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=28.62 E-value=97 Score=25.89 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHh
Q 007503 194 DLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (601)
Q Consensus 194 ~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~ 230 (601)
+.++|-+.+..|.++||++. .+-=.|..||.|-..++
T Consensus 42 g~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EY 80 (84)
T PF10752_consen 42 GEPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEY 80 (84)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHH
Confidence 57899999999999999999 44445788888866654
No 176
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=27.60 E-value=7.2e+02 Score=25.90 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=40.2
Q ss_pred CCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHH-hcCCcEEEE-Ec
Q 007503 500 FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQ-LAQYNFILV-VG 562 (601)
Q Consensus 500 ~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~-~~g~~~iiv-vG 562 (601)
.|.-|--+.|+--. ...+.+.+|++.|.+.|+-|-+.- .+..++..+. +.|.+|.+| +|
T Consensus 124 ~G~IPGva~ivG~a-~~~e~~~~I~~e~q~r~~lv~l~G---~i~~q~~E~G~~lg~~~~lvp~G 184 (287)
T cd01917 124 DWTIPGEAVILGRA-KDSKALKKIVDDLMGRGFMLFLCD---EIVEQLLEENVKLGLDYIAYPLG 184 (287)
T ss_pred cCCCCeEEEEEecC-CChHHHHHHHHHHHHCCcEEEEec---HHHHHHHHcCCeeccceeEeecC
Confidence 34445444444333 356788999999999999888754 4777777764 778888765 45
No 177
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.23 E-value=3.4e+02 Score=23.98 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEE
Q 007503 514 EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVV 561 (601)
Q Consensus 514 ~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivv 561 (601)
+.+.--..-++..||.+|+.|..--...+...-+..|...++.++.+-
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS 57 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLS 57 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 333334445555667777766654445556666666666666666553
No 178
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.17 E-value=1.9e+02 Score=27.33 Aligned_cols=94 Identities=12% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEe------CCCCcHHHHHHHHHhcCCcEEEEEcccccc----cCeEE
Q 007503 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVD------TTDRKIQKKVREAQLAQYNFILVVGEEEAK----SGQVS 572 (601)
Q Consensus 503 sp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d------~~~~~l~kki~~A~~~g~~~iivvG~~E~~----~~~V~ 572 (601)
.+..|+|+.-..+.=..++-+++.|...|+.|.+- ........+++.++..|.+++-.....+.. .-.+-
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 45567777655556677899999999999999992 123457788888899987765544333322 23344
Q ss_pred EEECC-CCceecc--cHHHHHHHHHHH
Q 007503 573 VRVRD-QGDHSNM--SIEDLLKHFKEK 596 (601)
Q Consensus 573 vr~~~-~~~q~~v--~l~el~~~l~~~ 596 (601)
|=-+- +|-...+ .+.++++.+.+.
T Consensus 104 IDal~G~G~~~~l~~~~~~~i~~iN~~ 130 (169)
T PF03853_consen 104 IDALFGTGFSGPLRGPIAELIDWINAS 130 (169)
T ss_dssp EEES-STTGGSCGSTCHHHHHHHHHHH
T ss_pred EEecccCCCCCCcCHHHHHHHHHHhcc
Confidence 44332 3433333 356666665543
No 179
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=26.89 E-value=52 Score=40.79 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=29.6
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|++||+|.+.. ...-||+|.|+|.-..+
T Consensus 839 erVFEIg~~FRnE~~~~----rHnpEFTmLE~y~a~~d 872 (1094)
T PRK02983 839 ERVFELGRNFRNEGVDA----THNPEFTLLEAYQAHAD 872 (1094)
T ss_pred CceEEEcceecCCCCCC----CccccccchhhhhhcCC
Confidence 37999999999999976 67889999999987654
No 180
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.25 E-value=4.5e+02 Score=26.81 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEE
Q 007503 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVV 561 (601)
Q Consensus 482 GveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivv 561 (601)
|+||++..+.+. | .+-+++|- ...+++.++.+.+++.|+..-.-....+-..+++.-....-.|+.++
T Consensus 103 G~e~f~~~~~~a--G--------vdgviipD--lp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v 170 (256)
T TIGR00262 103 GVEEFYAKCKEV--G--------VDGVLVAD--LPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLV 170 (256)
T ss_pred hHHHHHHHHHHc--C--------CCEEEECC--CChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 999999888765 2 24455552 23467888999999999987655555554456655444444466666
Q ss_pred c
Q 007503 562 G 562 (601)
Q Consensus 562 G 562 (601)
+
T Consensus 171 s 171 (256)
T TIGR00262 171 S 171 (256)
T ss_pred E
Confidence 5
No 181
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=26.19 E-value=1.3e+02 Score=25.17 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 99 WETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 99 ~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
.++|..|+...++-.. ..+-+..|||+..++++.+..+..|.+.-.
T Consensus 31 ~~~tvkd~IEsLGVP~-tEV~~i~vNG~~v~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 31 GGATVKDVIESLGVPH-TEVGLILVNGRPVDFDYRLKDGDRVAVYPV 76 (81)
T ss_pred CCCcHHHHHHHcCCCh-HHeEEEEECCEECCCcccCCCCCEEEEEec
Confidence 3889999999887543 346677799999999999999888876543
No 182
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=24.67 E-value=2.5e+02 Score=26.21 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeCCC---CcHHHHHHHHHhcCCcEEEEEcccc
Q 007503 516 SQPYALQVRDHIYRAGYYVDVDTTD---RKIQKKVREAQLAQYNFILVVGEEE 565 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~Gi~v~~d~~~---~~l~kki~~A~~~g~~~iivvG~~E 565 (601)
..+.|..+...|.+.|++|.+.-.+ .++..+.+.|+..++...|-+--+-
T Consensus 27 ~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na 79 (172)
T cd02696 27 NLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANA 79 (172)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecC
Confidence 4566888899999999999886543 5899999999999999999885443
No 183
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=24.36 E-value=41 Score=35.93 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=44.8
Q ss_pred ceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~ 379 (601)
|.++++|-.+||+|.-.+ +-+-||+|.+--| |..+..-.. +|-++..++..+|++
T Consensus 333 p~K~FSIDrVFRNEtvDa----THLAEFHQVEGvi-ad~gltLgd---Lig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 333 PAKYFSIDRVFRNETVDA----THLAEFHQVEGVI-ADKGLTLGD---LIGILMEFFTKLGAT 387 (483)
T ss_pred cccccchhhhhhccccch----HHHHHHhhhceee-ecCCCcHHH---HHHHHHHHHhccCCc
Confidence 689999999999999888 8999999988655 444443333 688999999999987
No 184
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=24.22 E-value=74 Score=26.40 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhc
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISK 112 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~ 112 (601)
++|+|++ ||+.+++.+ |.|+.+.+.....
T Consensus 2 ~~v~i~i-dG~~v~~~~-G~til~al~~~gi 30 (82)
T PF13510_consen 2 KMVTITI-DGKPVEVPP-GETILEALLAAGI 30 (82)
T ss_dssp EEEEEEE-TTEEEEEEE-T-BHHHHHHHTT-
T ss_pred CEEEEEE-CCEEEEEcC-CCHHHHHHHHCCC
Confidence 4588998 899999988 9999999987653
No 185
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=23.28 E-value=4e+02 Score=23.72 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCEEEEeCC-CCcHHHHHHHHHhcCCcEEEEEccccc-ccCeEEEEECCC-CceecccHHHHHHHH
Q 007503 521 LQVRDHIYRAGYYVDVDTT-DRKIQKKVREAQLAQYNFILVVGEEEA-KSGQVSVRVRDQ-GDHSNMSIEDLLKHF 593 (601)
Q Consensus 521 ~~i~~~Lr~~Gi~v~~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~-~~~~V~vr~~~~-~~q~~v~l~el~~~l 593 (601)
..+.+.-.+.|+.+.++.. ...+..++...+...+.++|++|+.+. ... |-. ..-..+++++.+..-
T Consensus 23 eaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~~------rF~gk~v~~~s~~~ai~d~ 92 (114)
T PRK10427 23 ERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGAE------RFEHCRYVQCSIYAFLREP 92 (114)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCchh------hhCCCeEEEecHHHHHHHH
Confidence 4444445567998888875 345566676677778899999998864 222 222 234556666665443
No 186
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.59 E-value=4.8e+02 Score=22.59 Aligned_cols=40 Identities=20% Similarity=0.050 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEE
Q 007503 521 LQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILV 560 (601)
Q Consensus 521 ~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iiv 560 (601)
.-++..||..|+.|..-....+...-++.+...+..++.+
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i 56 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL 56 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3455555666666533223344444455555555554443
No 187
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.20 E-value=1.4e+02 Score=26.35 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEe
Q 007503 505 RQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVD 537 (601)
Q Consensus 505 ~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d 537 (601)
.++.|+..+.. ...|++.++.|++.|+++.+-
T Consensus 10 ~di~iia~G~~-~~~al~A~~~L~~~Gi~~~vi 41 (124)
T PF02780_consen 10 ADITIIAYGSM-VEEALEAAEELEEEGIKAGVI 41 (124)
T ss_dssp SSEEEEEETTH-HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeehHH-HHHHHHHHHHHHHcCCceeEE
Confidence 47899988864 688999999999999998874
No 188
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=21.58 E-value=2.7e+02 Score=28.99 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeC---CCCcHHHHHHHHHhcCCcEEEEEcccc
Q 007503 516 SQPYALQVRDHIYRAGYYVDVDT---TDRKIQKKVREAQLAQYNFILVVGEEE 565 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~Gi~v~~d~---~~~~l~kki~~A~~~g~~~iivvG~~E 565 (601)
..+.|.++.+.|++.|+.|.+-- ..-++.++.+.|+..++.+.|-|--+-
T Consensus 84 ~L~IA~~l~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns 136 (287)
T PRK10319 84 VLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADG 136 (287)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCC
Confidence 45667888889988999998853 345799999999999999999886554
No 189
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.06 E-value=3.8e+02 Score=26.96 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEE
Q 007503 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVV 561 (601)
Q Consensus 482 GveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivv 561 (601)
|+++++..+.+. |. +-+++| +...+...++.+.+++.|+..-+-....+-.++++........|+.++
T Consensus 92 G~~~fi~~~~~a--G~--------~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~ 159 (242)
T cd04724 92 GLERFLRDAKEA--GV--------DGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYV 159 (242)
T ss_pred CHHHHHHHHHHC--CC--------cEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEE
Confidence 899999888765 21 334443 223457788999999999988887777777778888887677777776
Q ss_pred cc
Q 007503 562 GE 563 (601)
Q Consensus 562 G~ 563 (601)
+-
T Consensus 160 s~ 161 (242)
T cd04724 160 SR 161 (242)
T ss_pred eC
Confidence 53
No 190
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.54 E-value=3.8e+02 Score=23.66 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEec-CCCcHHHHHHHHHHHHHcCC-EEEEeCCCCcHHHHHHHHHhcCCcEEE
Q 007503 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPV-SEKSQPYALQVRDHIYRAGY-YVDVDTTDRKIQKKVREAQLAQYNFIL 559 (601)
Q Consensus 482 GveRli~iL~E~~~g~~p~~lsp~qv~Vip~-~~~~~~~A~~i~~~Lr~~Gi-~v~~d~~~~~l~kki~~A~~~g~~~ii 559 (601)
..|.++.+..+. .| ++++++. .......+.++.+.|++.|. .+.+-..+......+..+...|+.-.+
T Consensus 38 p~e~~~~~a~~~---------~~-d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 38 TPEEIVEAAIQE---------DV-DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CHHHHHHHHHHc---------CC-CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 456776666543 22 4444444 45567778899999999876 444444544555567777788877655
Q ss_pred EEc
Q 007503 560 VVG 562 (601)
Q Consensus 560 vvG 562 (601)
=.|
T Consensus 108 ~~~ 110 (122)
T cd02071 108 GPG 110 (122)
T ss_pred CCC
Confidence 443
No 191
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=20.53 E-value=3.6e+02 Score=25.56 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhC--Cce-EEcCccccCCcEEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 007503 155 WHSSAHILGQAIEQQYG--CKL-CIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (601)
Q Consensus 155 ~hS~~hlL~~A~~~~fg--~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~ii 213 (601)
-||+-|+++.-+++... .++ -+|| .+=--|||.-+. + ..+.++ ++.+++.++.+.
T Consensus 53 lHTlEHL~At~lRn~~~~~~~iI~~sP-MGCrTGFYli~~--g-~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 53 IHTLEHLLAGFLRNHLDGGVEIIDISP-MGCRTGFYLILI--G-TPDEEDVADALKATLEDVL 111 (158)
T ss_pred hhHHHHHHHHHHhhCccCCceEEEECC-CccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 79999999999999762 333 4454 331259988664 2 345555 566666666553
No 192
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=20.50 E-value=4.1e+02 Score=26.53 Aligned_cols=55 Identities=9% Similarity=0.195 Sum_probs=36.4
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhccccc-------------ceEEEEEcCEE--e-eccccccCCC
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAA-------------NALISMVNGVL--W-DMTRPLEADC 138 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~-------------~~v~a~Vng~l--~-dL~~~l~~d~ 138 (601)
..|+|++ ||+.+...+ |.|+++.|...+...+. ..-.++|||.. . .-..|+..+-
T Consensus 2 ~~v~i~i-dg~~~~~~~-g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm 72 (234)
T PRK07569 2 SVKTLTI-DDQLVSARE-GETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGM 72 (234)
T ss_pred ceEEEEE-CCEEEEeCC-CCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCC
Confidence 4588888 888888888 99999999875432211 33556788742 1 4455555543
No 193
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=20.12 E-value=3.8e+02 Score=32.15 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCCeEEEeCCCcEEEeecCCCCHHHHHHhhhc---cccc----------ceEEEEEcCEEe---eccccccCCCCeEEee
Q 007503 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISK---SLAA----------NALISMVNGVLW---DMTRPLEADCDLKLFT 144 (601)
Q Consensus 81 ~~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~---~~~~----------~~v~a~Vng~l~---dL~~~l~~d~~le~l~ 144 (601)
.+.|+|++ ||+.+++.+ |+|+.+.|+.... .+.+ ....+.|||... .-..|+..+-.|+--
T Consensus 2 ~~~v~~~i-dg~~~~~~~-g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~- 78 (797)
T PRK07860 2 PDLVTLTI-DGVEVSVPK-GTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQ- 78 (797)
T ss_pred CceEEEEE-CCEEEEeCC-CChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeC-
Confidence 35688888 899999998 9999999988552 2221 235566777521 344555544333221
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 007503 145 FDSDEGRDTFWHSSAHILG 163 (601)
Q Consensus 145 ~~~~eG~~vy~hS~~hlL~ 163 (601)
.+++.-++.-+.-+.+||.
T Consensus 79 ~~s~~v~~~r~~~le~ll~ 97 (797)
T PRK07860 79 LTSPVADKAQHGVMELLLI 97 (797)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 2356555555555555554
Done!