Query 007503
Match_columns 601
No_of_seqs 449 out of 3096
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf6_A THRRS, threonyl-tRNA sy 100.0 3E-105 9E-110 907.5 44.5 512 84-600 2-635 (642)
2 1nyr_A Threonyl-tRNA synthetas 100.0 5E-102 2E-106 884.0 41.0 515 82-601 2-643 (645)
3 3uh0_A Threonyl-tRNA synthetas 100.0 2.4E-58 8.2E-63 503.3 20.4 289 312-601 144-460 (460)
4 1tke_A Threonyl-tRNA synthetas 100.0 3.5E-54 1.2E-58 429.0 21.9 218 83-304 1-224 (224)
5 1evl_A Threonyl-tRNA synthetas 100.0 5.3E-49 1.8E-53 424.4 23.3 288 312-600 106-394 (401)
6 3a32_A Probable threonyl-tRNA 100.0 1E-44 3.6E-49 398.2 14.3 287 311-599 124-448 (471)
7 4hvc_A Bifunctional glutamate/ 100.0 1.5E-38 5E-43 349.9 13.1 254 311-599 142-414 (519)
8 1hc7_A Prolyl-tRNA synthetase; 100.0 4.5E-38 1.5E-42 345.0 15.9 250 311-599 125-387 (477)
9 3ial_A Prolyl-tRNA synthetase; 100.0 2.3E-38 7.8E-43 347.5 12.1 242 311-589 136-398 (518)
10 4e51_A Histidine--tRNA ligase; 100.0 1E-36 3.4E-41 334.0 20.7 265 315-597 128-458 (467)
11 2zt5_A Glycyl-tRNA synthetase; 100.0 7E-37 2.4E-41 347.6 17.9 290 307-600 255-659 (693)
12 1nj8_A Proline-tRNA synthetase 100.0 5.8E-37 2E-41 335.0 15.6 250 312-599 120-381 (459)
13 1h4v_B Histidyl-tRNA synthetas 100.0 1.6E-35 5.6E-40 321.0 25.1 266 312-597 96-420 (421)
14 1nj1_A PROR, proline-tRNA synt 100.0 7.2E-37 2.5E-41 337.3 14.6 252 311-599 151-414 (501)
15 2j3l_A Prolyl-tRNA synthetase; 100.0 7.1E-36 2.4E-40 335.9 21.2 281 311-599 123-566 (572)
16 1ati_A Glycyl-tRNA synthetase; 100.0 5.4E-36 1.9E-40 330.6 17.7 275 307-597 198-503 (505)
17 3net_A Histidyl-tRNA synthetas 100.0 7.7E-36 2.7E-40 327.1 17.8 270 313-597 116-464 (465)
18 1htt_A Histidyl-tRNA synthetas 100.0 3.9E-35 1.3E-39 318.2 23.2 267 312-597 96-422 (423)
19 1wu7_A Histidyl-tRNA synthetas 100.0 9.7E-36 3.3E-40 324.0 18.2 261 315-597 97-425 (434)
20 2i4l_A Proline-tRNA ligase; al 100.0 1.4E-36 4.7E-41 332.5 7.8 273 311-593 143-457 (458)
21 3ikl_A DNA polymerase subunit 100.0 2.2E-35 7.4E-40 317.8 16.1 263 303-599 158-449 (459)
22 1g5h_A Mitochondrial DNA polym 100.0 1E-35 3.6E-40 323.7 12.5 262 303-599 148-439 (454)
23 1qe0_A Histidyl-tRNA synthetas 100.0 4.9E-34 1.7E-38 309.2 20.7 264 312-594 95-419 (420)
24 4g85_A Histidine-tRNA ligase, 100.0 9.1E-34 3.1E-38 314.9 15.1 276 312-598 152-514 (517)
25 4g84_A Histidine--tRNA ligase, 100.0 7.3E-33 2.5E-37 303.7 16.1 273 312-598 99-461 (464)
26 3lc0_A Histidyl-tRNA synthetas 100.0 3.4E-32 1.1E-36 296.9 16.8 261 313-589 119-446 (456)
27 1v4p_A Alanyl-tRNA synthetase; 99.9 3.4E-27 1.2E-31 221.6 13.9 128 149-282 2-136 (157)
28 3od1_A ATP phosphoribosyltrans 99.9 1.2E-21 4.2E-26 210.1 11.6 232 313-568 99-396 (400)
29 2ztg_A Alanyl-tRNA synthetase; 99.8 3.7E-20 1.3E-24 208.8 18.1 153 124-283 566-724 (739)
30 3kew_A DHHA1 domain protein; s 99.8 3E-20 1E-24 185.8 13.5 148 123-283 64-216 (241)
31 2zze_A Alanyl-tRNA synthetase; 99.8 3.4E-18 1.2E-22 192.8 16.9 152 124-283 578-738 (752)
32 2e1b_A PH0108, 216AA long hypo 99.8 1.7E-18 5.7E-23 170.5 12.7 130 124-283 64-203 (216)
33 1v95_A Nuclear receptor coacti 99.7 1.4E-17 5E-22 149.0 10.2 98 502-599 6-107 (130)
34 2dq3_A Seryl-tRNA synthetase; 99.7 1.5E-18 5.1E-23 187.3 1.3 161 312-511 246-423 (425)
35 1wwt_A Threonyl-tRNA synthetas 99.7 3.7E-18 1.3E-22 144.3 1.2 82 78-159 6-87 (88)
36 2dq0_A Seryl-tRNA synthetase; 99.6 5.6E-17 1.9E-21 176.1 5.1 156 312-506 267-438 (455)
37 1usy_A ATP phosphoribosyltrans 99.6 8.6E-17 2.9E-21 164.3 2.2 89 313-413 65-158 (275)
38 3rac_A Histidine-tRNA ligase; 99.6 1.5E-15 5.3E-20 161.3 6.6 72 314-388 114-190 (373)
39 1z7m_A ATP phosphoribosyltrans 99.5 5.1E-15 1.7E-19 155.8 6.1 69 313-388 113-183 (344)
40 1ses_A Seryl-tRNA synthetase; 99.5 3.1E-15 1.1E-19 161.1 1.9 158 312-506 240-412 (421)
41 1wle_A Seryl-tRNA synthetase; 99.5 1.1E-14 3.9E-19 159.0 3.0 161 312-510 297-473 (501)
42 3vbb_A Seryl-tRNA synthetase, 99.2 3.4E-12 1.2E-16 139.3 4.3 170 312-515 286-473 (522)
43 3lss_A Seryl-tRNA synthetase; 99.2 1.1E-11 3.7E-16 134.5 6.1 73 312-384 284-361 (484)
44 3err_A Fusion protein of micro 99.2 5.4E-12 1.8E-16 139.3 3.7 73 312-384 349-426 (536)
45 2cja_A Seryl-tRNA synthetase; 99.2 3.2E-12 1.1E-16 140.2 1.2 71 312-384 339-411 (522)
46 3qne_A Seryl-tRNA synthetase, 99.2 8.8E-12 3E-16 135.1 3.5 72 313-384 264-338 (485)
47 2kmm_A Guanosine-3',5'-BIS(dip 99.1 1.7E-10 5.8E-15 93.3 7.7 66 83-149 2-67 (73)
48 3hvz_A Uncharacterized protein 98.9 2.5E-09 8.6E-14 87.5 7.3 67 82-149 6-72 (78)
49 3mf2_A BLL0957 protein; aminoa 98.5 8E-08 2.7E-12 99.3 6.7 70 315-387 166-235 (346)
50 3dsq_A Pyrrolysyl-tRNA synthet 97.9 1.1E-05 3.8E-10 82.4 6.5 64 314-384 146-211 (288)
51 3qtc_A Pyrrolysyl-tRNA synthet 96.8 0.0014 4.8E-08 66.8 6.1 61 314-382 152-212 (290)
52 1nnh_A Asparaginyl-tRNA synthe 95.0 0.018 6E-07 58.7 4.6 53 317-377 88-141 (294)
53 1tyg_B YJBS; alpha beta barrel 94.9 0.039 1.3E-06 45.6 5.6 60 82-145 19-83 (87)
54 2l32_A Small archaeal modifier 94.0 0.042 1.4E-06 44.0 3.9 60 83-147 2-64 (74)
55 1f0z_A THis protein; ubiquitin 93.9 0.091 3.1E-06 40.8 5.5 57 85-145 2-62 (66)
56 1ryj_A Unknown; beta/alpha pro 93.6 0.11 3.8E-06 40.9 5.7 58 84-145 5-66 (70)
57 1x54_A Asparaginyl-tRNA synthe 93.5 0.062 2.1E-06 57.7 5.1 35 317-355 200-235 (434)
58 1n9w_A Aspartyl-tRNA synthetas 93.4 0.056 1.9E-06 57.8 4.6 36 317-356 190-226 (422)
59 2cu3_A Unknown function protei 93.1 0.23 7.9E-06 38.2 6.6 55 86-145 2-60 (64)
60 2k5p_A THis protein, thiamine- 93.1 0.11 3.6E-06 42.1 4.7 59 84-145 1-65 (78)
61 2kl0_A Putative thiamin biosyn 92.9 0.11 3.7E-06 41.5 4.5 57 85-146 2-62 (73)
62 1wyd_A Hypothetical aspartyl-t 92.9 0.084 2.9E-06 56.6 5.1 36 317-356 199-235 (429)
63 1eov_A ASPRS, aspartyl-tRNA sy 92.6 0.075 2.6E-06 57.9 4.3 35 317-355 244-280 (487)
64 3a74_A Lysyl-tRNA synthetase; 91.1 0.17 5.9E-06 55.1 5.1 36 317-356 242-277 (493)
65 1e1o_A Lysyl-tRNA synthetase, 89.5 0.31 1.1E-05 53.2 5.3 35 318-356 252-286 (504)
66 3a5y_A GENX, putative lysyl-tR 88.7 0.36 1.2E-05 50.1 4.8 35 318-356 110-144 (345)
67 3l4g_A Phenylalanyl-tRNA synth 86.0 0.83 2.9E-05 49.7 5.9 64 315-386 345-409 (508)
68 1rws_A Hypothetical protein PF 85.3 0.56 1.9E-05 37.5 3.2 53 90-145 21-73 (77)
69 2du3_A O-phosphoseryl-tRNA syn 83.9 1.3 4.4E-05 48.4 6.3 64 314-385 202-267 (534)
70 2eki_A DRG 1, developmentally- 83.5 3 0.0001 34.6 6.8 53 94-146 29-88 (93)
71 1vjk_A Molybdopterin convertin 80.4 1.5 5.2E-05 36.5 4.1 46 100-145 36-94 (98)
72 2xgt_A Asparaginyl-tRNA synthe 78.5 1.7 5.8E-05 46.5 4.7 35 318-356 198-233 (435)
73 3nem_A Aspartyl-tRNA synthetas 76.5 3 0.0001 44.6 5.9 34 318-355 204-238 (438)
74 4ah6_A Aspartate--tRNA ligase, 75.0 2.3 7.8E-05 47.4 4.7 34 318-355 217-250 (617)
75 1fm0_D Molybdopterin convertin 73.9 9.5 0.00033 30.0 7.0 46 100-145 25-77 (81)
76 1l0w_A Aspartyl-tRNA synthetas 71.1 3.8 0.00013 45.4 5.3 35 318-356 213-247 (580)
77 1c0a_A Aspartyl tRNA synthetas 70.7 3.8 0.00013 45.5 5.1 35 318-356 207-241 (585)
78 2g1e_A Hypothetical protein TA 69.7 7.5 0.00026 31.3 5.6 52 93-145 18-86 (90)
79 3po0_A Small archaeal modifier 69.3 5.6 0.00019 32.2 4.7 45 100-144 27-84 (89)
80 2q5w_D Molybdopterin convertin 68.8 4.1 0.00014 31.9 3.7 46 100-145 25-73 (77)
81 3dwg_C 9.5 kDa culture filtrat 68.5 6.4 0.00022 32.1 4.9 45 100-144 25-88 (93)
82 4ex5_A Lysine--tRNA ligase; st 67.3 4.9 0.00017 43.9 5.0 34 318-355 273-306 (529)
83 3bju_A Lysyl-tRNA synthetase; 66.0 5.3 0.00018 43.6 5.0 34 318-355 245-278 (521)
84 3gk0_A PNP synthase, pyridoxin 64.8 20 0.00067 35.5 8.2 66 484-560 105-182 (278)
85 3m4p_A Ehasnrs, asparaginyl-tR 62.4 6.9 0.00024 42.0 5.0 35 318-356 222-257 (456)
86 1m5w_A Pyridoxal phosphate bio 61.6 25 0.00085 34.2 8.2 66 484-560 77-154 (243)
87 3o6c_A PNP synthase, pyridoxin 58.9 14 0.00049 36.2 6.0 66 484-560 76-151 (260)
88 2hj1_A Hypothetical protein; s 57.9 6.5 0.00022 32.9 3.0 59 94-153 30-93 (97)
89 1b7y_A Phers, protein (phenyla 55.1 22 0.00075 36.7 7.1 58 314-379 190-248 (350)
90 2l52_A Methanosarcina acetivor 54.0 16 0.00054 30.3 4.9 62 82-145 4-95 (99)
91 3i7f_A Aspartyl-tRNA synthetas 51.5 13 0.00043 40.9 4.8 34 318-355 311-346 (548)
92 3rpf_C Molybdopterin convertin 48.4 17 0.0006 28.2 4.0 59 84-144 3-69 (74)
93 1j6x_A Autoinducer-2 productio 43.5 68 0.0023 29.0 7.5 57 153-213 52-109 (160)
94 2du7_A O-phosphoseryl-tRNA syn 42.4 24 0.00083 38.5 5.2 62 314-383 214-277 (549)
95 3pco_A Phenylalanyl-tRNA synth 40.4 48 0.0017 33.7 6.8 62 314-384 181-245 (327)
96 1vje_A Autoinducer-2 productio 38.0 91 0.0031 28.4 7.4 57 153-213 54-111 (166)
97 1wxq_A GTP-binding protein; st 36.1 15 0.00051 38.5 2.3 53 92-145 341-395 (397)
98 2rhq_A Phenylalanyl-tRNA synth 34.7 50 0.0017 32.9 5.9 57 315-379 130-187 (294)
99 3pzy_A MOG; ssgcid, seattle st 34.7 45 0.0015 30.2 5.1 63 502-565 5-77 (164)
100 2odr_B Phosphoseryl-tRNA synth 34.2 53 0.0018 36.4 6.3 64 314-385 221-286 (648)
101 2odr_A Phosphoseryl-tRNA synth 34.0 53 0.0018 36.5 6.3 64 314-385 221-286 (665)
102 2odr_D Phosphoseryl-tRNA synth 33.8 54 0.0018 36.5 6.3 64 314-385 221-286 (685)
103 1wgk_A Riken cDNA 2900073H19 p 33.6 57 0.0019 27.8 5.2 45 100-144 42-103 (114)
104 2odr_C Phosphoseryl-tRNA synth 33.3 56 0.0019 36.5 6.3 64 314-385 221-286 (701)
105 4grd_A N5-CAIR mutase, phospho 31.8 1.6E+02 0.0054 27.1 8.0 59 503-561 11-74 (173)
106 3qay_A Endolysin; amidase A/B 30.3 1.3E+02 0.0045 27.4 7.6 50 516-565 31-88 (180)
107 1v8c_A MOAD related protein; r 29.9 41 0.0014 30.8 3.9 45 101-145 23-83 (168)
108 2qjl_A URM1, ubiquitin-related 29.1 77 0.0026 25.9 5.2 45 100-144 31-94 (99)
109 1jwq_A N-acetylmuramoyl-L-alan 27.8 1.2E+02 0.004 27.8 6.7 49 516-564 30-82 (179)
110 1xmp_A PURE, phosphoribosylami 27.0 2.1E+02 0.0073 26.1 8.0 56 506-561 13-73 (170)
111 1j6w_A Autoinducer-2 productio 26.9 1.5E+02 0.0052 27.2 7.0 57 153-213 51-112 (175)
112 1mkz_A Molybdenum cofactor bio 25.3 1.6E+02 0.0053 26.7 7.0 64 503-566 9-81 (172)
113 3kuu_A Phosphoribosylaminoimid 25.0 2.5E+02 0.0085 25.8 8.1 57 506-562 14-75 (174)
114 3lp6_A Phosphoribosylaminoimid 24.7 2.4E+02 0.0082 25.9 8.0 57 505-561 8-69 (174)
115 1j98_A Autoinducer-2 productio 24.7 2E+02 0.0067 26.0 7.2 57 153-213 51-113 (157)
116 3trh_A Phosphoribosylaminoimid 24.3 2.5E+02 0.0084 25.7 7.9 58 505-562 7-69 (169)
117 3rfq_A Pterin-4-alpha-carbinol 24.0 91 0.0031 28.9 5.2 64 503-566 29-101 (185)
118 1o4v_A Phosphoribosylaminoimid 23.9 2.9E+02 0.0098 25.6 8.4 56 506-561 15-75 (183)
119 3maz_A Signal-transducing adap 21.3 98 0.0034 26.9 4.5 79 219-317 19-100 (125)
120 3oow_A Phosphoribosylaminoimid 21.1 4E+02 0.014 24.2 8.6 58 506-563 7-69 (166)
121 1u11_A PURE (N5-carboxyaminoim 20.9 3.3E+02 0.011 25.1 8.1 57 505-561 22-83 (182)
122 3ne8_A N-acetylmuramoyl-L-alan 20.5 2E+02 0.0069 27.5 7.0 50 516-565 32-85 (234)
123 1y5e_A Molybdenum cofactor bio 20.1 1.9E+02 0.0064 26.0 6.4 63 503-565 12-83 (169)
No 1
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2.6e-105 Score=907.50 Aligned_cols=512 Identities=41% Similarity=0.744 Sum_probs=491.5
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHH
Q 007503 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILG 163 (601)
Q Consensus 84 I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hlL~ 163 (601)
|+||+|||++++++. +|||+|||++|++++++.+++|+|||++|||++||+.||+|++|+|+|++|++++|||++|||+
T Consensus 2 ~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~~~HSa~HlL~ 80 (642)
T 1qf6_A 2 PVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG 80 (642)
T ss_dssp CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHHHHHHHHHHHH
T ss_pred ceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHHHHHHHHHHHH
Confidence 899999999999887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhc--Chhhh
Q 007503 164 QAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFKV 238 (601)
Q Consensus 164 ~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~--~~~K~ 238 (601)
+|++++| ++++++||+++ +||||||++ +.++|++|+++||++|+++| |+||++.++|++||+++|+. ++||+
T Consensus 81 ~Al~~~~~~~~~~~G~~i~--~gfy~Df~~-~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~ 157 (642)
T 1qf6_A 81 HAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKV 157 (642)
T ss_dssp HHHHHHCTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCCCcEEEECCccC--CeeEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchh
Confidence 9999999 67999999999 999999997 56899999999999999999 99999999999999999997 78999
Q ss_pred hhc-ccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhhhh------
Q 007503 239 EII-NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------ 311 (601)
Q Consensus 239 ~li-~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~------ 311 (601)
+|+ +.+|.++.|++|+||+|+|+|+||||||||+|+.|+|++.+++||+++.++..+||+||++||+++.|.+
T Consensus 158 ~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~e 237 (642)
T 1qf6_A 158 SILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLE 237 (642)
T ss_dssp HHHHHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred hhhhcccCCCCceEEEEECCEEEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCchhHHhhhhhhhh
Confidence 999 8776667899999999999999999999999999999999999999999999999999999999987732
Q ss_pred --------------------------------------------------------------------------------
Q 007503 312 -------------------------------------------------------------------------------- 311 (601)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (601)
T Consensus 238 ea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~m 317 (642)
T 1qf6_A 238 EAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAM 317 (642)
T ss_dssp HHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGC
T ss_pred ccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccc
Confidence
Q ss_pred -----------------------------hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHH
Q 007503 312 -----------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEV 362 (601)
Q Consensus 312 -----------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei 362 (601)
+|+++|+|++++|.+||+|.+|...||+|+|||+|+|+|+||+++++++|+
T Consensus 318 y~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~ 397 (642)
T 1qf6_A 318 FTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEV 397 (642)
T ss_dssp EEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHH
T ss_pred eeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHH
Confidence 788999999999999999999888999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHhCcE-EEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhh
Q 007503 363 RGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (601)
Q Consensus 363 ~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~ 441 (601)
..+++++.++|+.|||+ |.+.++++|++++|+.+.|+.++..|+++|+..|++|..++|+++||||++++.+.|++|+.
T Consensus 398 ~~~i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~ 477 (642)
T 1qf6_A 398 NGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRA 477 (642)
T ss_dssp HHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCE
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCce
Confidence 99999999999999995 99999999988999999999999999999999999999999999999999999999999999
Q ss_pred hhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHH
Q 007503 442 FQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYAL 521 (601)
Q Consensus 442 ~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~ 521 (601)
|+|+|+++||++|.+||+.|.+.+ |+..+|+|+|+|++||+||++++|+|+++|.||.|++|.||+|+|++++..++|.
T Consensus 478 ~~~gti~~df~l~~r~~~~y~~~~-g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~ 556 (642)
T 1qf6_A 478 WQCGTVQLDFSLPSRLSASYVGED-NERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVN 556 (642)
T ss_dssp EEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHH
T ss_pred EEeeeEEEeccCCccCCCEEEecC-CCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHH
Confidence 999999999999999999998776 6677899999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 522 QVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 522 ~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
+|++.||++|++|++|+++.++++||++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.+++++++|
T Consensus 557 ~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~ 635 (642)
T 1qf6_A 557 ELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 635 (642)
T ss_dssp HHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988776
No 2
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=4.8e-102 Score=883.96 Aligned_cols=515 Identities=39% Similarity=0.723 Sum_probs=487.6
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHH
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHI 161 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hl 161 (601)
.+|+||+|||++++++. +||++|||+++++.+++.+|+|+|||++|||++||+.||+|+||+++|++|+++||||++||
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~Hl 80 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHL 80 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccchhHHHHHHHHHHHH
Confidence 46899999999988887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhh
Q 007503 162 LGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKV 238 (601)
Q Consensus 162 L~~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~ 238 (601)
|++|++++| +..+++||+++ +||||||.. +.++|++|+++||++|+++| |+||++.+++++||+++|++++||+
T Consensus 81 L~~A~~~~~~~~~~~~g~~~~--~g~~~Df~~-~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~ 157 (645)
T 1nyr_A 81 MAHAIKRLYGNVKFGVGPVIE--GGFYYDFDI-DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKL 157 (645)
T ss_dssp HHHHHHHHSSSCEECCCCEET--TEEEEEEEC-SSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCcEEEECCccC--CceEEEecC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchH
Confidence 999999999 57789999998 999999987 56899999999999999999 9999999999999999999889999
Q ss_pred hhcccCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccccchhhhh-------
Q 007503 239 EIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------- 311 (601)
Q Consensus 239 ~li~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp~~~~l~~------- 311 (601)
+|++.+|.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||++...++.+|||||++||+++.|.+
T Consensus 158 ~li~~~~~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~e 237 (645)
T 1nyr_A 158 ELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEE 237 (645)
T ss_dssp HHHCCCSSSCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCeeEEEEECCEEEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhh
Confidence 9999987666899999999999999999999999999999999999999999999999999999999888743
Q ss_pred --------------------------------------------------------------------------------
Q 007503 312 -------------------------------------------------------------------------------- 311 (601)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (601)
T Consensus 238 a~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~m 317 (645)
T 1nyr_A 238 RKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDM 317 (645)
T ss_dssp HHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSS
T ss_pred hhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCc
Confidence
Q ss_pred -------------------------------hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHH
Q 007503 312 -------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKD 360 (601)
Q Consensus 312 -------------------------------s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~ 360 (601)
+|+++|+|++++|.+||+|.+|...||+|+|||+|+|+|+||+++++..
T Consensus 318 f~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d 397 (645)
T 1nyr_A 318 FPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKE 397 (645)
T ss_dssp CCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHH
T ss_pred ceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHH
Confidence 6889999999999999999999889999999999999999999999666
Q ss_pred HHHHHHHHHHHHHHHhCcE-EEEEEccCC----CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHH
Q 007503 361 EVRGVLEFIDYAYRIFGFT-YELKLSTRP----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVS 435 (601)
Q Consensus 361 Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~----~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~ 435 (601)
|+..++.++.++|+.|||+ |++.+|+++ ++++|+.+.|++++..|+++|+..|.++..++|+++||||++++.+.
T Consensus 398 ~~~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~ 477 (645)
T 1nyr_A 398 EFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVK 477 (645)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehh
Confidence 6667999999999999995 999999998 67899999999999999999999999999999999999999999889
Q ss_pred HHHhhhhhhcceeeccCCCcccceeEeecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecC-C
Q 007503 436 DALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-E 514 (601)
Q Consensus 436 d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~-~ 514 (601)
|++++.|+|+|+++||+++.+|++.|.+.+ |+..+|+|||+|++||+||++++|+|+++|.||.|++|.||+|+|++ +
T Consensus 478 d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~-g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~ 556 (645)
T 1nyr_A 478 TAMGKEETLSTAQLDFLLPERFDLTYIGQD-GEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVD 556 (645)
T ss_dssp CTTSCCEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHH
T ss_pred hhhCchhhcceEEeecccccccceEEECCC-CCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccH
Confidence 999999999999999999999888776555 66789999999999999999999999988999999999999999999 8
Q ss_pred CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHH
Q 007503 515 KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 594 (601)
Q Consensus 515 ~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~ 594 (601)
+..++|.+|++.||++|++|++|+++.++++|+++|++.|+||++|||++|+++|+|+||+|++++|..++++++++.+.
T Consensus 557 ~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~ 636 (645)
T 1nyr_A 557 LHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLV 636 (645)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHH
Confidence 89999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 007503 595 EKLEAFQ 601 (601)
Q Consensus 595 ~~~~~~~ 601 (601)
+++++|.
T Consensus 637 ~~~~~~~ 643 (645)
T 1nyr_A 637 DEIRLKK 643 (645)
T ss_dssp HHHHTTC
T ss_pred HHHhhhc
Confidence 9888763
No 3
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=2.4e-58 Score=503.26 Aligned_cols=289 Identities=45% Similarity=0.895 Sum_probs=279.8
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHH-HHhCcE---------EE
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-RIFGFT---------YE 381 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l-~~lG~~---------~~ 381 (601)
+|+++|+|++++|.+||+|.++...||+|+|||+|+|+|+||+++++++|+..+++++.++| +.|||+ ++
T Consensus 144 s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~ 223 (460)
T 3uh0_A 144 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYF 223 (460)
T ss_dssp BGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCE
T ss_pred cccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceE
Confidence 68999999999999999999998899999999999999999999899999999999999999 999997 99
Q ss_pred EEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeE
Q 007503 382 LKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGY 461 (601)
Q Consensus 382 l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y 461 (601)
+.+++||++++|+.++|+.|+.+|+++|+..|.+|..|||+++||||||++.+.|++|+.|||+|+||||++|.+|++.|
T Consensus 224 ~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y 303 (460)
T 3uh0_A 224 INFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKF 303 (460)
T ss_dssp EEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEEECTTSCEEEEEEEEEESHHHHHTTCCE
T ss_pred EEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEEEccCCCeeeecccccccccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCC---cHHHHHHHHHHHHHc--------
Q 007503 462 SAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK---SQPYALQVRDHIYRA-------- 530 (601)
Q Consensus 462 ~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~---~~~~A~~i~~~Lr~~-------- 530 (601)
.+.+ |+..+|+|+|+|++||+||++++|+|+++|+||+|++|.||+|+|++++ ..++|.+|++.||++
T Consensus 304 ~~~~-g~~~~P~~ih~~~~Gg~eRli~~Lie~~~g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~ 382 (460)
T 3uh0_A 304 KDQD-NSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEP 382 (460)
T ss_dssp ECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCC
T ss_pred ECCC-CCccCcEEEecCcchHHHHHHHHHHHHcCCCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccc
Confidence 9887 7788999999999999999999999998899999999999999999988 899999999999998
Q ss_pred ------CCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCc-eecccHHHHHHHHHHHHHhcC
Q 007503 531 ------GYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGD-HSNMSIEDLLKHFKEKLEAFQ 601 (601)
Q Consensus 531 ------Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~-q~~v~l~el~~~l~~~~~~~~ 601 (601)
|++|++|+++.++|+||++|++.|+||+||||++|+++|+|+||+|++++ |..++++++++.+++++++++
T Consensus 383 ~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~~~~ 460 (460)
T 3uh0_A 383 VPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKNYK 460 (460)
T ss_dssp CCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 999999999999999998864
No 4
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=3.5e-54 Score=429.00 Aligned_cols=218 Identities=36% Similarity=0.650 Sum_probs=209.1
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHH
Q 007503 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (601)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS~~hlL 162 (601)
+|+|++|||+.+++++ ++|+.|+|+.++..+++.+|+|+|||++|||++||+.||+|++|++++++|+++||||++|||
T Consensus 1 ~i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL 79 (224)
T 1tke_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (224)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHHHHHHHHHHH
Confidence 3789999999999998 899999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceEEcCccccCCcEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhc--Chhh
Q 007503 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (601)
Q Consensus 163 ~~A~~~~f-g~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~--~~~K 237 (601)
++|++++| ++++++||+++ +||||||++ +.++|++|+++||++|+++| |+||++.+++++||+++|++ +++|
T Consensus 80 ~~A~~~~~~~~~~~~g~~~~--~g~y~d~~~-~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k 156 (224)
T 1tke_A 80 GHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156 (224)
T ss_dssp HHHHHHHSTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCcEEEECCccC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchH
Confidence 99999999 58899999998 999999987 46899999999999999999 99999999999999999987 6789
Q ss_pred hhhccc-CCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCcceeeccccc
Q 007503 238 VEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYP 304 (601)
Q Consensus 238 ~~li~~-~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l~ri~g~~fp 304 (601)
++|++. +|.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||+|+.++++||||||++||
T Consensus 157 ~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 157 VSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp HHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred HHHhccccCCCCeeEEEEeCCEEEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 999997 7667899999999999999999999999999999999999999999999999999999997
No 5
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=5.3e-49 Score=424.36 Aligned_cols=288 Identities=44% Similarity=0.814 Sum_probs=271.6
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCc-EEEEEEccCCCc
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEK 390 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~-~~~l~ls~r~~~ 390 (601)
+|+++|++++++|.+||+|.++...||+|+|||+|+|+|+||+++++++|+..+++++.++|+.||+ +|++.++++++.
T Consensus 106 s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~~~~~~~~~ 185 (401)
T 1evl_A 106 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEK 185 (401)
T ss_dssp BGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEEEEECCCSS
T ss_pred hhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCcc
Confidence 6789999999999999999996668999999999999999998666999888899999999999999 599999999878
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeecCCCCcc
Q 007503 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE 470 (601)
Q Consensus 391 ~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~ 470 (601)
..|+.+.|+.++..++++|+..|+++++++++++||||++|..+.+++|+.|+++|+++||+++.++|+.|.+.. |+..
T Consensus 186 ~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~-g~~~ 264 (401)
T 1evl_A 186 RIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGED-NERK 264 (401)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTT-SCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccccccccCCEEECCC-CCCc
Confidence 899999999999999999999999999999999999999998888888999999999999998999999998765 6667
Q ss_pred cceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHH
Q 007503 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREA 550 (601)
Q Consensus 471 ~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A 550 (601)
.|+|+|+|++||+||++++|.|++++.||.|++|.||+|+|++++..++|.+|++.||++|++|++|+++.++++|+++|
T Consensus 265 ~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~A 344 (401)
T 1evl_A 265 VPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREH 344 (401)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Confidence 89988889999999999999998888999999999999999999999999999999999999999999989999999999
Q ss_pred HhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHhc
Q 007503 551 QLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 600 (601)
Q Consensus 551 ~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~~ 600 (601)
++.|+||+||||++|+++|+|+||+|++++|..++++++++.++++++++
T Consensus 345 ~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~~~ 394 (401)
T 1evl_A 345 TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 394 (401)
T ss_dssp HHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHHTT
T ss_pred HhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999888765
No 6
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1e-44 Score=398.19 Aligned_cols=287 Identities=33% Similarity=0.555 Sum_probs=256.3
Q ss_pred hhhc---cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHH-hCc----E-EE
Q 007503 311 HAFA---ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRI-FGF----T-YE 381 (601)
Q Consensus 311 ~s~r---elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~-lG~----~-~~ 381 (601)
.+|+ ++|+|++++|.+||+|.++++.||+|+|||+|+|+|+||+++++..|+..++.++.++|+. ||+ + |+
T Consensus 124 ~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~ 203 (471)
T 3a32_A 124 AKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFK 203 (471)
T ss_dssp HHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEE
T ss_pred hhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeE
Confidence 4787 8999999999999999999889999999999999999999998555555599999999999 999 5 99
Q ss_pred EEEccCC-----CccCCChhhHHHHHHHHHHHHHH----cCCCccccCCCCcccccchhhhHHH---HHhhhhhhcceee
Q 007503 382 LKLSTRP-----EKYLGDLATWEKAEAALTEALNE----FGKPWQINEGDGAFYGPKIDISVSD---ALKRKFQCATLQL 449 (601)
Q Consensus 382 l~ls~r~-----~~~lG~~~~~~~~~~~L~~~L~~----~~~~~~~~~g~~af~gpki~~~~~d---~l~~~~~~~ti~l 449 (601)
+.+++++ +.++|..+.|++++..|.+.+.. .+.++.++++.++|+||+++..+.| ++++.++++++++
T Consensus 204 l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~l 283 (471)
T 3a32_A 204 VRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQF 283 (471)
T ss_dssp EEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEE
T ss_pred EEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEeccHHhhhhhheeeeEEe
Confidence 9999998 67889999999998888776654 4888888888899999999887767 7778888889999
Q ss_pred ccCCCcccceeEee--cCCCCcccceEEeccccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecC------CCcHHHHH
Q 007503 450 DFQLPDRFNLGYSA--EDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS------EKSQPYAL 521 (601)
Q Consensus 450 d~~l~~~~~L~Y~t--~~~g~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p~~lsp~qv~Vip~~------~~~~~~A~ 521 (601)
|++++..|++.||| .+ |.. .|+++|++++||+||++++|+|+++|.||.|++|.||+|+|++ ++..++|.
T Consensus 284 D~~l~r~~d~~Yyt~~~~-G~~-e~~~i~~~i~GgieRli~~lie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~ 361 (471)
T 3a32_A 284 DFNLPRRFRLYDVVREEF-GIE-EVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLAS 361 (471)
T ss_dssp ESSHHHHTTHHHHHHHHH-CCS-CEEEEEEEEEEEHHHHHHHHHHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHH
T ss_pred cccccccCCceEeccccC-Cce-eeEEEeccccCcHHHHHHHHHHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHH
Confidence 99988888888999 44 334 7877899999999999988888877899999999999999998 56789999
Q ss_pred HHHHHHHHcCCEEEEeC-CCCcHHHHHHHHH-hcCCcEEEEEcccccccCeEEEEECCCCc--eecccHH-----HHHHH
Q 007503 522 QVRDHIYRAGYYVDVDT-TDRKIQKKVREAQ-LAQYNFILVVGEEEAKSGQVSVRVRDQGD--HSNMSIE-----DLLKH 592 (601)
Q Consensus 522 ~i~~~Lr~~Gi~v~~d~-~~~~l~kki~~A~-~~g~~~iivvG~~E~~~~~V~vr~~~~~~--q~~v~l~-----el~~~ 592 (601)
++++.||++|++|++|+ ++.++++|+++|+ +.|+||+|+||++|+++|+|+||+|++++ +..|+++ ++++.
T Consensus 362 ~i~~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~ 441 (471)
T 3a32_A 362 SIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVEN 441 (471)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccceEEEeecccchhHHHHH
Confidence 99999999999999999 7889999999999 99999999999999999999999999998 6888888 88888
Q ss_pred HHHHHHh
Q 007503 593 FKEKLEA 599 (601)
Q Consensus 593 l~~~~~~ 599 (601)
+.+++++
T Consensus 442 ~~~~~~~ 448 (471)
T 3a32_A 442 LAAVAEE 448 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 7
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=349.89 Aligned_cols=254 Identities=20% Similarity=0.238 Sum_probs=220.7
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEE-EecCchhHHHHHHHHHHHHHHHHHh-CcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~ei-fg~~~~~d~Ei~~~i~~~~~~l~~l-G~~~~l~ls~r~ 388 (601)
.+|+++|+|++++|.+||+|.++. .||+|+|||+|.|+|+ ||+++++++|+..+++++.++|+.| |++|.+..++++
T Consensus 142 ~SyrdLPlrl~q~g~~fR~E~~~~-~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~ 220 (519)
T 4hvc_A 142 QSHRDLPIKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEK 220 (519)
T ss_dssp SSGGGCCEEEEEEEEEECCCCSCC-BTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTT
T ss_pred cccccCCeEEEEEcCeeeCCCCCC-CCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCc
Confidence 489999999999999999998876 8999999999999998 6676779999999999999999997 899877788888
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcce-eeccCCCcccceeEeecC-C
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAED-E 466 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti-~ld~~l~~~~~L~Y~t~~-~ 466 (601)
++++|....|+ +. +|+ ++.|+.+|++|+ +|+++++.+|++.|.+.+ .
T Consensus 221 e~~~Ga~~t~~------------------iE----a~~---------p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~ 269 (519)
T 4hvc_A 221 EKFAGGDYTTT------------------IE----AFI---------SASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIP 269 (519)
T ss_dssp TSCTTSSEEEE------------------EE----EEE---------TTTTEEEEEEEEEEEETHHHHHHTCEEECTTST
T ss_pred cccCCchhhee------------------ee----eee---------ccCCCEEeecccccccchhhhhcCcEEeccccC
Confidence 88888776542 11 232 346788999998 799989999999999753 1
Q ss_pred CCcccceEEeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEecC----------CCcHHHHHHHHHHHHHcCC
Q 007503 467 AKTERPVMIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVS----------EKSQPYALQVRDHIYRAGY 532 (601)
Q Consensus 467 g~~~~P~~i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip~~----------~~~~~~A~~i~~~Lr~~Gi 532 (601)
|.. .++|++++|..+|++++|+|++ ++.||.|++|.||+|+|++ ++..++|.+|++.|+++|+
T Consensus 270 g~~---~~vh~~~~Gi~~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Gi 346 (519)
T 4hvc_A 270 GEK---QFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNI 346 (519)
T ss_dssp TCE---EECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCE---EEEEEccccHHHHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCC
Confidence 322 2467777774499999999975 3589999999999999998 3467899999999999999
Q ss_pred EEEEeCCCC-cHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 533 YVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 533 ~v~~d~~~~-~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
+|++|+++. ++|+||++|++.|+||+|+||++|+++|+|+||+|+++++..|+++++++.+.+++++
T Consensus 347 rv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~ 414 (519)
T 4hvc_A 347 RVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILED 414 (519)
T ss_dssp CEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHH
Confidence 999999974 9999999999999999999999999999999999999999999999999999888764
No 8
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=4.5e-38 Score=344.97 Aligned_cols=250 Identities=20% Similarity=0.290 Sum_probs=213.6
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHH-HHhCcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAY-RIFGFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l-~~lG~~~~l~ls~r~ 388 (601)
.+|+++|++++++|.+||+|.+++ ||+|+|||+|+|+|+|+.+.+ +++|+..++.++.++| +.|||+|.+.+++++
T Consensus 125 ~s~r~LP~rl~qig~vfR~E~~~r--Gl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~ 202 (477)
T 1hc7_A 125 RSWRDLPQLLNQWGNVVRWEMRTR--PFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEK 202 (477)
T ss_dssp CBGGGCCEEEEEEEEEECCCSSCB--TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTT
T ss_pred hccccCCeeeEeecCEEeCCCCCC--CcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 478899999999999999998854 899999999999999877665 9999988899999999 899999999998887
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccceeEeecCCC
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~L~Y~t~~~g 467 (601)
+++.|....|+ ++..+.| ++.++++|++ ++++++.+||+.|.+.+ |
T Consensus 203 e~~~g~~~~~~------------------------------ie~~~~d--gr~~~~gt~~~lg~~~s~~~g~~y~~~~-G 249 (477)
T 1hc7_A 203 EKFAGAVYTTT------------------------------IEALMKD--GKALQAGTSHYLGENFARAFDIKFQDRD-L 249 (477)
T ss_dssp TSCTTSSEEEE------------------------------EEEECTT--SCEEEEEEEEEEETHHHHHTTCEEECTT-S
T ss_pred HhcCCcccceE------------------------------EEEEcCC--CcEEEEeeeEEcccccccccCeEEECCC-C
Confidence 77766554332 1111111 3456778877 88888889999998765 5
Q ss_pred CcccceEEeccccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEecCC-----CcHHHHHHHHHHHHHcCCEEEEeC
Q 007503 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVSE-----KSQPYALQVRDHIYRAGYYVDVDT 538 (601)
Q Consensus 468 ~~~~P~~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv~Vip~~~-----~~~~~A~~i~~~Lr~~Gi~v~~d~ 538 (601)
....|.+.++|+ | ||++++|+|+++ +.||.|++|.||+|+|+++ +..++|.+|++.||++|++|++|+
T Consensus 250 ~~~~~~~~~~Gi--g-eRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~ 326 (477)
T 1hc7_A 250 QVKYVHTTSWGL--S-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDD 326 (477)
T ss_dssp CEEECEEEEEEE--E-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CEEeeeEeeccH--H-HHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 433344466777 8 999999998863 5899999999999999986 578999999999999999999999
Q ss_pred C-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 539 T-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 539 ~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
+ +.++++|+++|++.|+||+|+||++|+++|+|+||+|+ ++|..|+++++++.+.+++++
T Consensus 327 ~~~~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~~ 387 (477)
T 1hc7_A 327 RDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLDA 387 (477)
T ss_dssp CSSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHHH
Confidence 8 89999999999999999999999999999999999999 999999999999998877654
No 9
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.3e-38 Score=347.53 Aligned_cols=242 Identities=20% Similarity=0.331 Sum_probs=211.7
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEe-cCchhHHHHHHHHHHHHHHH-HHhCcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFC-RESQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg-~~~~~d~Ei~~~i~~~~~~l-~~lG~~~~l~ls~r~ 388 (601)
.+|+++|++++++|.+||+|.++. .||+|+|||+|.|+|+|| +++++++|+..+++++.++| +.|||+|.+. .++
T Consensus 136 ~SyrdLPlrl~q~~~~fR~E~~~~-~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~--~~~ 212 (518)
T 3ial_A 136 RSYKDLPLKIHQTCTIFRHETKNT-KPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKL--RRV 212 (518)
T ss_dssp CBGGGCCEEEEEEEEEECTTCCSC-BTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEE--EEC
T ss_pred cccccCCeEEEEEeceecCCCCCC-CCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEee--ecC
Confidence 478999999999999999997776 899999999999999995 55569999999999999999 9999996543 333
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccceeEeecCCC
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~L~Y~t~~~g 467 (601)
. |+ + ..+|+|+++++..+.+ ++.+|++|++ |+++++.+|++.|.+.+ |
T Consensus 213 ~--------~e------------------~--~~gA~yt~~iE~~~pd--gr~ie~gt~~~Lg~~~s~rf~i~y~d~~-g 261 (518)
T 3ial_A 213 C--------WD------------------R--FPGADYSEVSDVVMPC--GRVLQTAGIHNLGQRFSSTFDILYANKA-N 261 (518)
T ss_dssp G--------GG------------------C--CTTCSEEEEEEEECTT--SCEEEEEEEEEEETHHHHHTTCCEECTT-C
T ss_pred h--------hh------------------c--cCCCccceEEEEEcCC--CCEEEEeceecccchhhhhcCcEEECCC-C
Confidence 1 11 1 2357888998887766 7889999998 89888999999999877 5
Q ss_pred CcccceEEeccccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEecC----------CCcHHHHHHHHHHHHHc-CC
Q 007503 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVS----------EKSQPYALQVRDHIYRA-GY 532 (601)
Q Consensus 468 ~~~~P~~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv~Vip~~----------~~~~~~A~~i~~~Lr~~-Gi 532 (601)
....| |++++|..+|++++|+|+++ +.||+|++|+||+|+|++ ++..++|.+|++.|+++ |+
T Consensus 262 ~~~~~---h~~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Gi 338 (518)
T 3ial_A 262 ESVHP---YLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGL 338 (518)
T ss_dssp CEECC---EEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEeee---EEeccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCe
Confidence 44444 66788866999999999884 489999999999999997 34678999999999999 99
Q ss_pred EEEEeCC-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCc--eecccHHHH
Q 007503 533 YVDVDTT-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGD--HSNMSIEDL 589 (601)
Q Consensus 533 ~v~~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~--q~~v~l~el 589 (601)
+|++|++ +.++|+|+++|++.|+||+|+||++|+++|+|+||+|++++ +..|+++++
T Consensus 339 rv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el 398 (518)
T 3ial_A 339 RVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEV 398 (518)
T ss_dssp CEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHH
Confidence 9999998 89999999999999999999999999999999999999999 999999999
No 10
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1e-36 Score=334.03 Aligned_cols=265 Identities=18% Similarity=0.251 Sum_probs=207.5
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCCccC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYL 392 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~~~l 392 (601)
++|+|++++|.+||+|+++. +|+|||+|+|+|+||.+++ +|+| +|.++.++|+.||++ |+|+||| +
T Consensus 128 ~lP~r~~~~g~vfR~E~~~~----gR~ReF~Q~d~ei~g~~~~~adaE---vi~l~~~~l~~lGl~~~~i~in~-----~ 195 (467)
T 4e51_A 128 DGPKRLWYIGPMFRHERPQR----GRYRQFHQVGVEALGFAGPDADAE---IVMMCQRLWEDLGLTGIKLEINS-----L 195 (467)
T ss_dssp TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHHHH---HHHHHHHHHHHHTCCCEEEEEEE-----C
T ss_pred CCCEEEEEEccEEccCCCCC----CCcCceEEEEEEEEeCCChHHHHH---HHHHHHHHHHHcCCCceEEEEeC-----C
Confidence 58999999999999999988 8999999999999999999 9999 899999999999997 9999955 5
Q ss_pred CChhhHHHHHHHHHHHHHHcCCC--------cc---------ccCCCCccc--ccchhhhHHHHHhhhh-------hhcc
Q 007503 393 GDLATWEKAEAALTEALNEFGKP--------WQ---------INEGDGAFY--GPKIDISVSDALKRKF-------QCAT 446 (601)
Q Consensus 393 G~~~~~~~~~~~L~~~L~~~~~~--------~~---------~~~g~~af~--gpki~~~~~d~l~~~~-------~~~t 446 (601)
|..+++..+.+.|.++|..+... .. ++++..... +|++..++.++....+ +...
T Consensus 196 g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~~l~~~L~~~g 275 (467)
T 4e51_A 196 GLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKANN 275 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHcC
Confidence 77788888888888887643110 00 111111111 4555443322222222 2112
Q ss_pred eeeccCCCcccceeEeecC-----------------CC----------CcccceEEeccccccHHHHHHHHHHhcCCCCC
Q 007503 447 LQLDFQLPDRFNLGYSAED-----------------EA----------KTERPVMIHRAILGSVERMFAILLEHYKGKWP 499 (601)
Q Consensus 447 i~ld~~l~~~~~L~Y~t~~-----------------~g----------~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p 499 (601)
+.+.+++...+|++|||+. || +...|+ +|+|+ |+||++++|.++ +.+|
T Consensus 276 i~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~Pa-vGfa~--gleRl~~~l~~~--~~~~ 350 (467)
T 4e51_A 276 VPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAA-CGWAM--GIERILELLKEE--HLVP 350 (467)
T ss_dssp CCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCE-EEEEE--EHHHHHHHHHHT--TCCC
T ss_pred CeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCc-eeehH--HHHHHHHHHHhc--CCcc
Confidence 2233444556889999865 11 246788 68888 999999999886 5666
Q ss_pred CCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC----CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEE
Q 007503 500 FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT----DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRV 575 (601)
Q Consensus 500 ~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~----~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~ 575 (601)
. .+|.||+|+|++++...+|.++++.||++|++|++|.+ +.++++|+++|++.|+||+||||++|+++|+|+||+
T Consensus 351 ~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~~E~~~g~V~vk~ 429 (467)
T 4e51_A 351 E-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKP 429 (467)
T ss_dssp C-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEE
T ss_pred c-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEE
Confidence 5 68899999999988899999999999999999999998 899999999999999999999999999999999999
Q ss_pred CCC-C------ceecccHHHHHHHHHHHH
Q 007503 576 RDQ-G------DHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 576 ~~~-~------~q~~v~l~el~~~l~~~~ 597 (601)
|++ + +|..++++++++.+++.+
T Consensus 430 ~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 430 LRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp C---------CCCEEEEGGGHHHHHHHHH
T ss_pred CCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 999 8 999999999999998876
No 11
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=7e-37 Score=347.59 Aligned_cols=290 Identities=21% Similarity=0.272 Sum_probs=203.3
Q ss_pred hhhhh-hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchh---------------------------
Q 007503 307 KRLKH-AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQI--------------------------- 358 (601)
Q Consensus 307 ~~l~~-s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~--------------------------- 358 (601)
+.+.. +|+++|++++++|.+||+|.+++ .||+|+|||+|+|+|+||.+++.
T Consensus 255 ~r~~~~~~~~LP~~~aqiG~~fRnEisPr-~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~ 333 (693)
T 2zt5_A 255 KRLLEFNQGKLPFAAAQIGNSFRNEISPR-SGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSA 333 (693)
T ss_dssp HHHHHHTTTCSCEEEEEEEEEECCCSSCC-SGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCC
T ss_pred HHHHHHhCcCCCEEEEeecceecCCCCCC-CCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhcccccc
Confidence 34444 47899999999999999998864 99999999999999999988873
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhCcE-EEEEEccC-C-Ccc--------------CCChhhHHHH---HH
Q 007503 359 ---------------KDEVRGVLEFIDYAYRIFGFT-YELKLSTR-P-EKY--------------LGDLATWEKA---EA 403 (601)
Q Consensus 359 ---------------d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r-~-~~~--------------lG~~~~~~~~---~~ 403 (601)
..++..++.++.++|..|||+ ..+.++++ + +.. .|..++|+.+ ..
T Consensus 334 ~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~ 413 (693)
T 2zt5_A 334 RKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCY 413 (693)
T ss_dssp EEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHH
Confidence 245777899999999999997 66666666 2 122 3333444322 23
Q ss_pred HHHHHHHHcCCCcc---------------ccCCCCcccccchhh---hHHHHHhhhhhh--------------cceeec-
Q 007503 404 ALTEALNEFGKPWQ---------------INEGDGAFYGPKIDI---SVSDALKRKFQC--------------ATLQLD- 450 (601)
Q Consensus 404 ~L~~~L~~~~~~~~---------------~~~g~~af~gpki~~---~~~d~l~~~~~~--------------~ti~ld- 450 (601)
.|...++..+.++. .+++++++ ||++.. .+.|.+++.+++ .++++|
T Consensus 414 dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vdG 492 (693)
T 2zt5_A 414 DLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEG 492 (693)
T ss_dssp HHHHHHHHHTCCCCEEEC--------------------------------------------------------------
T ss_pred HHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEECC
Confidence 56666666665443 34566665 555542 223333332221 123334
Q ss_pred --cCCCc-cccee-EeecCCCCcccceEEeccccccHHHHHHHHHHh-c----------CCCCCCCCCCceEEEEecCCC
Q 007503 451 --FQLPD-RFNLG-YSAEDEAKTERPVMIHRAILGSVERMFAILLEH-Y----------KGKWPFWLSPRQAIVCPVSEK 515 (601)
Q Consensus 451 --~~l~~-~~~L~-Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~-~----------~g~~p~~lsp~qv~Vip~~~~ 515 (601)
|.++. .++++ |+....|+..+|+|+|+|+ |++|++++|+|+ + ++.||.|++|.||+|+|++++
T Consensus 493 t~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~--GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~ 570 (693)
T 2zt5_A 493 KTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSF--GLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQN 570 (693)
T ss_dssp -------------------CCEEECCEEEEEEE--EHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEEESCCS
T ss_pred EEEEecccccceeeEEeccCCcEecCcceeCee--hHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEEEecCc
Confidence 55543 23455 4333335566899889999 899999999886 3 358999999999999999865
Q ss_pred --cHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEccccc--ccCeEEEEECCCCceecccHHHHHH
Q 007503 516 --SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEA--KSGQVSVRVRDQGDHSNMSIEDLLK 591 (601)
Q Consensus 516 --~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~--~~~~V~vr~~~~~~q~~v~l~el~~ 591 (601)
...+|.+|++.||++|++|++|+++.++++|+++|++.|+||+||||++|+ ++|+|+||+|++++|..++++++++
T Consensus 571 ~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~ 650 (693)
T 2zt5_A 571 QEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPS 650 (693)
T ss_dssp TTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCEEEEETTTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCceEEEeHHHHHH
Confidence 899999999999999999999999899999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhc
Q 007503 592 HFKEKLEAF 600 (601)
Q Consensus 592 ~l~~~~~~~ 600 (601)
.+.++++.+
T Consensus 651 ~l~~~l~~~ 659 (693)
T 2zt5_A 651 IVQDLANGN 659 (693)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHhCc
Confidence 998877643
No 12
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=5.8e-37 Score=335.03 Aligned_cols=250 Identities=17% Similarity=0.277 Sum_probs=212.0
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeee-ecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCCC
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE 389 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~-Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~ 389 (601)
+|+++|++++++|.+||+|.++ .+||+|+|||+ |+|+|+|+.+.+ +++|+..++.++.++|+.|||++.+.++++++
T Consensus 120 s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~e 198 (459)
T 1nj8_A 120 VHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWD 198 (459)
T ss_dssp BTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTS
T ss_pred hcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEeecCchh
Confidence 7889999999999999999994 46899999999 999999887766 99999999999999999999998888877655
Q ss_pred ccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccceeEeecCCCC
Q 007503 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEAK 468 (601)
Q Consensus 390 ~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~L~Y~t~~~g~ 468 (601)
++.|....|+ ++..+.+ ++.++++|++ |+.+++.+||+.|.+.+ |.
T Consensus 199 k~~ga~~~~~------------------------------ie~~~~d--g~~~e~gt~~~lg~~~s~~~~~~Y~~~~-G~ 245 (459)
T 1nj8_A 199 KFPGAEYTMA------------------------------FDTIFPD--GRTMQIATVHNLGQNFSKTFEIIFETPT-GD 245 (459)
T ss_dssp CCTTCSEEEE------------------------------EEEECTT--SCEEEEEEEEEEETHHHHHTTCEEECTT-SS
T ss_pred hcCCccccee------------------------------EEEEcCC--CcEEEEEEEeecccccccccCeEEECCC-CC
Confidence 5544433321 1111111 5667888886 88888889999999866 54
Q ss_pred cccceEEeccccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEec-C-C---CcHHHHHHHHHHHHHcCCEEEEeCC
Q 007503 469 TERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV-S-E---KSQPYALQVRDHIYRAGYYVDVDTT 539 (601)
Q Consensus 469 ~~~P~~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv~Vip~-~-~---~~~~~A~~i~~~Lr~~Gi~v~~d~~ 539 (601)
...+.++++|+ | ||++++|+|+++ +.||.|++|.||+|+|+ + + +..++|.+|++.||++ ++|++|++
T Consensus 246 ~~~v~~~~~Gi--g-eRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~ 321 (459)
T 1nj8_A 246 KDYAYQTCYGI--S-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDR 321 (459)
T ss_dssp EEECEEEEEEE--C-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCS
T ss_pred EeeeeEeeccH--H-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECC
Confidence 33344466666 8 999999988764 48999999999999999 6 4 5789999999999999 99999999
Q ss_pred CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 540 DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 540 ~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
+.++++|+++|++.|+||+|+||++|+++|+|+||+|++++|..++++++++.+.+++++
T Consensus 322 ~~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~ 381 (459)
T 1nj8_A 322 DIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 381 (459)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999998877654
No 13
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.6e-35 Score=321.00 Aligned_cols=266 Identities=21% Similarity=0.239 Sum_probs=212.9
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCC
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~ 389 (601)
+++++|+|++++|.+||+|+++. +|.|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ |.+.+||
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~~----gR~REf~Q~g~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~~~~i~i~~--- 165 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQK----GRYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLRRLKVKLSS--- 165 (421)
T ss_pred cccCCCeEEEEecCeecCCCCCC----CCcccEEEccEEEECCCChhhhHH---HHHHHHHHHHHcCCCceEEEEcC---
Confidence 44689999999999999998876 7999999999999999998 9999 799999999999998 9999955
Q ss_pred ccCCChhhHHHHHHHHHHHHHHc--CCC------cc---------ccCCCCccc----ccchhhhHHH----HHhhhhhh
Q 007503 390 KYLGDLATWEKAEAALTEALNEF--GKP------WQ---------INEGDGAFY----GPKIDISVSD----ALKRKFQC 444 (601)
Q Consensus 390 ~~lG~~~~~~~~~~~L~~~L~~~--~~~------~~---------~~~g~~af~----gpki~~~~~d----~l~~~~~~ 444 (601)
+|+.+++..+.+.|.+++... ... .. .+++..+++ +|++...+.+ .+++.++.
T Consensus 166 --~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~ 243 (421)
T 1h4v_B 166 --VGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERH 243 (421)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHH
Confidence 567777666655565555432 110 00 011223343 5776654432 23333332
Q ss_pred -----cceeeccCCCcccceeEeecC-----------------CCC----------cccceEEeccccccHHHHHHHHHH
Q 007503 445 -----ATLQLDFQLPDRFNLGYSAED-----------------EAK----------TERPVMIHRAILGSVERMFAILLE 492 (601)
Q Consensus 445 -----~ti~ld~~l~~~~~L~Y~t~~-----------------~g~----------~~~P~~i~~ai~GGveRli~iL~E 492 (601)
.++++|+.++ .+++||||. ||. ...|+ +|+|+ |+||++++|.|
T Consensus 244 l~~~g~~i~~D~~l~--rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa-~Gf~i--gieRl~~~l~e 318 (421)
T 1h4v_B 244 LERLSVPYELEPALV--RGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPG-VGFAF--GVERVALALEA 318 (421)
T ss_pred HHHcCCeEEEecccc--cchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCe-EEEee--cHHHHHHHHHh
Confidence 2567787765 578899864 111 25787 68999 99999999988
Q ss_pred hcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEE
Q 007503 493 HYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVS 572 (601)
Q Consensus 493 ~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~ 572 (601)
+ |.+|+|.+|.+|+|+|++++..++|.++++.||++ ++|++|+++.++++|+++|++.|+||+||||++|.++|+|+
T Consensus 319 ~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~~~~a~~~g~p~~iivG~~e~~~~~v~ 395 (421)
T 1h4v_B 319 E--GFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVT 395 (421)
T ss_pred c--CcCCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHHHHHHHhCCCCEEEEECchHhhcCcEE
Confidence 7 45555789999999999988899999999999999 99999998899999999999999999999999999999999
Q ss_pred EEECCCCceecccHHHHHHHHHHHH
Q 007503 573 VRVRDQGDHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 573 vr~~~~~~q~~v~l~el~~~l~~~~ 597 (601)
||+|++++|..++++++++.+++++
T Consensus 396 vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 396 LKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred EEECCCCCceEECHHHHHHHHHHhh
Confidence 9999999999999999999987754
No 14
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=7.2e-37 Score=337.34 Aligned_cols=252 Identities=18% Similarity=0.305 Sum_probs=212.6
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeee-ecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~-Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
.+|+++|++++++|.+||+|.++ ..||+|+|||+ |.|+|+|+.... +++|+..++.++.++|+.|||+|++.+++++
T Consensus 151 ~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~ 229 (501)
T 1nj1_A 151 RSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPW 229 (501)
T ss_dssp CBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTT
T ss_pred cccccCCEEEEeecCEeeCCCCC-CCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 37889999999999999999984 46999999999 999998766654 9999999999999999999999988887665
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhccee-eccCCCcccceeEeecCCC
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~-ld~~l~~~~~L~Y~t~~~g 467 (601)
+++.|....|+ ++..+.+ ++.+++++++ ++.+.+.+||+.|.+.+ |
T Consensus 230 e~~~~a~~~~d------------------------------ie~~l~~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~-g 276 (501)
T 1nj1_A 230 DKFPGSEYTVA------------------------------FDTLMPD--GKTLQIGTVHNLGQTFARTFEIKFETPE-G 276 (501)
T ss_dssp TSCTTCSEEEE------------------------------EEEECTT--SCEEEEEEEEEEETHHHHHHTCEEECTT-S
T ss_pred hhcCCcccceE------------------------------EEEEcCC--CCEEEEEEEEeccccchhhcCeEEECCC-C
Confidence 55444433221 1111222 5667888875 77777889999998866 5
Q ss_pred CcccceEEeccccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEec-C-C---CcHHHHHHHHHHHHHcCCEEEEeC
Q 007503 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV-S-E---KSQPYALQVRDHIYRAGYYVDVDT 538 (601)
Q Consensus 468 ~~~~P~~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv~Vip~-~-~---~~~~~A~~i~~~Lr~~Gi~v~~d~ 538 (601)
+...|.+.++|+ | +|++++|+|+++ +.||.|++|+||+|+|+ + + +..++|.+|++.||++|++|++|+
T Consensus 277 ~~~~~h~~g~Gi--g-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~ 353 (501)
T 1nj1_A 277 DHEYVHQTCYGL--S-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDD 353 (501)
T ss_dssp CEEECEEEEEEE--C-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred CEEeeeeccccH--H-HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 444444567777 8 999999999864 37999999999999999 5 4 578999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 539 TDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 539 ~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
++.++++|+++|++.|+||+|+||++|+++|+|+||+|++++|..++++++++.+.+++++
T Consensus 354 ~~~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~ 414 (501)
T 1nj1_A 354 RDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKD 414 (501)
T ss_dssp CSSCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHH
Confidence 9899999999999999999999999999999999999999999999999999998887754
No 15
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=7.1e-36 Score=335.87 Aligned_cols=281 Identities=21% Similarity=0.302 Sum_probs=208.0
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE 389 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~ 389 (601)
.+|+++|+|++++|.+||+|.++ ..||+|+|||+|+|+|+||.+.+ +++|+..++.++.++|+.|||+|++.++++.
T Consensus 123 ~s~~~lP~r~~~~g~~fR~E~~~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g- 200 (572)
T 2j3l_A 123 NSYKRLPLNLYQIQTKYRDEKRS-RSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGG- 200 (572)
T ss_dssp CBGGGCCEEEEEEEEEECCCSSC-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG-
T ss_pred cChhhcCHhhheecCeeccCcCc-ccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc-
Confidence 37889999999999999999997 58999999999999999999765 9999999999999999999999999987742
Q ss_pred ccCCCh-----------------------------------------------------hh--HHHHH------------
Q 007503 390 KYLGDL-----------------------------------------------------AT--WEKAE------------ 402 (601)
Q Consensus 390 ~~lG~~-----------------------------------------------------~~--~~~~~------------ 402 (601)
.+|.. +. -+...
T Consensus 201 -~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~~lg~~~~~i~K 279 (572)
T 2j3l_A 201 -AMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIK 279 (572)
T ss_dssp -GGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHHHHTCCGGGBEE
T ss_pred -cCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHHHHhCcCHHHeEE
Confidence 11110 00 00000
Q ss_pred -----------------------HHHHHHHHHcCC------CccccCC-CCccccc-----chhhhHHHH----------
Q 007503 403 -----------------------AALTEALNEFGK------PWQINEG-DGAFYGP-----KIDISVSDA---------- 437 (601)
Q Consensus 403 -----------------------~~L~~~L~~~~~------~~~~~~g-~~af~gp-----ki~~~~~d~---------- 437 (601)
..+.++|..... ++....| ...+++| ++...+...
T Consensus 280 ~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~sl~r~~~~~~g 359 (572)
T 2j3l_A 280 SVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVG 359 (572)
T ss_dssp EEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEETTTTTCCSEEEE
T ss_pred EEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCccccCCccCCCCCcEEEehhhhcCCceEEc
Confidence 011111110000 0000000 0011222 111000000
Q ss_pred ------------Hhhhhh------------------h-cceeec--------cCCC----cccceeEeecCCCCcccceE
Q 007503 438 ------------LKRKFQ------------------C-ATLQLD--------FQLP----DRFNLGYSAEDEAKTERPVM 474 (601)
Q Consensus 438 ------------l~~~~~------------------~-~ti~ld--------~~l~----~~~~L~Y~t~~~g~~~~P~~ 474 (601)
+|+.|+ | ++++++ |+|+ .+|++.|.+.. |....|+|
T Consensus 360 a~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~~~-g~~~~p~~ 438 (572)
T 2j3l_A 360 ANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDEN-GREKSVIM 438 (572)
T ss_dssp CSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEECTT-SCEEECEE
T ss_pred cCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEeccCcccccccCCEEECCC-CcEEeeee
Confidence 122222 1 223333 5554 57788887654 55668887
Q ss_pred EeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEecC---CCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHH
Q 007503 475 IHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKV 547 (601)
Q Consensus 475 i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip~~---~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki 547 (601)
.++|| |+||++++|.|++ ++.||.|++|.||+|+|++ ++...+|.+|++.||++|++|++|+++.++++|+
T Consensus 439 g~~gi--GveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~~~~g~k~ 516 (572)
T 2j3l_A 439 GCYGI--GVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKF 516 (572)
T ss_dssp EEEEE--EHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHH
T ss_pred ecccc--CHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHhHHH
Confidence 67888 9999999998886 4689999999999999998 6678999999999999999999999989999999
Q ss_pred HHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHHh
Q 007503 548 REAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 548 ~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~~ 599 (601)
++|++.|+||+||||++| ++|+|+||+|++++|..++++++++.++ +++.
T Consensus 517 ~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~~ 566 (572)
T 2j3l_A 517 ADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILMN 566 (572)
T ss_dssp HHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHCC
T ss_pred HHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHhc
Confidence 999999999999999999 9999999999999999999999999998 7653
No 16
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=5.4e-36 Score=330.64 Aligned_cols=275 Identities=21% Similarity=0.192 Sum_probs=219.5
Q ss_pred hhhhhhh-ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEE
Q 007503 307 KRLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (601)
Q Consensus 307 ~~l~~s~-relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~l 384 (601)
.....+| +++|++++++|.+||+|.++ ..||+|+|||+|+|+|+||+++++..|+..++.++.++|+.|||+ +.+.+
T Consensus 198 ~~~~~sy~r~LP~rl~qig~~FR~E~~p-r~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~ 276 (505)
T 1ati_A 198 KNVLDATSRKLGFGIAQIGKAFRNEITP-RNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVP 276 (505)
T ss_dssp HHHHHHHTCCSSEEEEEEEEEEBCCSSC-CTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHhcCCCCCEEEEEeeceeeCCCCC-CCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4455688 89999999999999999774 489999999999999999999998888888999999999999998 67888
Q ss_pred ccCCC-ccC-CChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHH-HhhhhhhcceeeccCCCcccceeE
Q 007503 385 STRPE-KYL-GDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDA-LKRKFQCATLQLDFQLPDRFNLGY 461 (601)
Q Consensus 385 s~r~~-~~l-G~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~-l~~~~~~~ti~ld~~l~~~~~L~Y 461 (601)
++++. ... ++..+|+. +++... .|... .+..+++..+...... .+.. .++.+++++.+.++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~d~------E~~~p~--~~~e~--~g~~~~~d~~L~~~~~~~~~~--~~~~~~~~n~~~~~~~~y 344 (505)
T 1ati_A 277 YQQPPESSAHYAKATVDI------LYRFPH--GSLEL--EGIAQRTDFDLGSHTKDQEAL--GITARVLRNEHSTQRLAY 344 (505)
T ss_dssp EECCTTTSCTTCSEEEEE------EEEETT--EEEEE--EEEEECTTHHHHHHCSSTTTT--TCCSCCCCCSCCCSCCCE
T ss_pred CCCChHhhhcccHHHHhH------HhhcCC--CCccc--hhhhcccceecchhhcccccc--ceeeeecccccceeEEEE
Confidence 77753 332 66666642 111111 11111 1233445433111000 0111 146678889999999999
Q ss_pred eecCCCCcccceEEeccccccHHHHHHHHHHhc-------CC------CCCCCCCCceEEEEecCC---CcHHHHHHHHH
Q 007503 462 SAEDEAKTERPVMIHRAILGSVERMFAILLEHY-------KG------KWPFWLSPRQAIVCPVSE---KSQPYALQVRD 525 (601)
Q Consensus 462 ~t~~~g~~~~P~~i~~ai~GGveRli~iL~E~~-------~g------~~p~~lsp~qv~Vip~~~---~~~~~A~~i~~ 525 (601)
.++++++.-.|+++|+|+ |+||++++|.|++ +| .||.|++|+||+|+|+++ +..++|.+|++
T Consensus 345 ~d~~g~~~y~p~vig~s~--GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~ 422 (505)
T 1ati_A 345 RDPETGKWFVPYVIEPSA--GVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKA 422 (505)
T ss_dssp ECSSSCCEECCEEEEEEE--EHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHH
T ss_pred EcCCCCeeecceEEEEee--EHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHH
Confidence 987633333787799999 9999999998774 12 599999999999999987 68899999999
Q ss_pred HHHHcC-CEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccc---------cCeEEEEECCCCceecccHHHHHHHHHH
Q 007503 526 HIYRAG-YYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAK---------SGQVSVRVRDQGDHSNMSIEDLLKHFKE 595 (601)
Q Consensus 526 ~Lr~~G-i~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~---------~~~V~vr~~~~~~q~~v~l~el~~~l~~ 595 (601)
.||++| ++|++|++ .++++|+++|++.|+||+||||++|++ +|+|+||+|++++|..|+++++++.+.+
T Consensus 423 ~Lr~~G~i~v~~D~~-~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~ 501 (505)
T 1ati_A 423 RLLALGLGRVLYEDT-GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRE 501 (505)
T ss_dssp HHHTTCSSCEEECCC-SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHH
T ss_pred HHhccCCEEEEECCC-CCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHHHHHHH
Confidence 999999 99999998 899999999999999999999999999 9999999999999999999999999887
Q ss_pred HH
Q 007503 596 KL 597 (601)
Q Consensus 596 ~~ 597 (601)
++
T Consensus 502 ~l 503 (505)
T 1ati_A 502 RL 503 (505)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 17
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=7.7e-36 Score=327.09 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=203.0
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-h--HHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-I--KDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~--d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
+.+.|+|++|+|++||+++++. +|.|||+|+|+|+||.+++ + |+| +|.++.++|+.||++ |+|+|||+.
T Consensus 116 ~~~~p~r~~y~g~vfR~e~~~~----gr~Ref~Q~g~ei~G~~~~~a~~DaE---vi~l~~~~l~~lgl~~~~i~in~~~ 188 (465)
T 3net_A 116 DLTFPFARYQMDVVFRGERAKD----GRFRQFRQCDIDVVGREKLSLLYDAQ---MPAIITEIFEAVNIGDFVIRINNRK 188 (465)
T ss_dssp GSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHHHH---HHHHHHHHHHHHTCSCEEEEEEEHH
T ss_pred ccCCCeEEEEeccEEecCCCCC----CCcceeEEeeEEEECCCCccchhhHH---HHHHHHHHHHHcCCCceEEEECCHH
Confidence 4568999999999999999987 8999999999999999998 9 999 899999999999997 999999986
Q ss_pred -----CccCCChhhHHHHHHH------------HHHHHHHcCCCccccCCCC---cccccc---hh---h----------
Q 007503 389 -----EKYLGDLATWEKAEAA------------LTEALNEFGKPWQINEGDG---AFYGPK---ID---I---------- 432 (601)
Q Consensus 389 -----~~~lG~~~~~~~~~~~------------L~~~L~~~~~~~~~~~g~~---af~gpk---i~---~---------- 432 (601)
...+|.++.|...... +++.|.+.|++....+... .++|+. ++ .
T Consensus 189 ~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~ 268 (465)
T 3net_A 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQ 268 (465)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccChH
Confidence 2457777654322111 1122333333221111000 112221 10 0
Q ss_pred --hHHHHHhhhh--h-h-cc----eeeccCCCcccceeEeecC-----------------CCCcc----------cceEE
Q 007503 433 --SVSDALKRKF--Q-C-AT----LQLDFQLPDRFNLGYSAED-----------------EAKTE----------RPVMI 475 (601)
Q Consensus 433 --~~~d~l~~~~--~-~-~t----i~ld~~l~~~~~L~Y~t~~-----------------~g~~~----------~P~~i 475 (601)
...+.+.+.+ . + .. +++|+.+ .+|++||||. ||.|+ .|+ +
T Consensus 269 ~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~l--vrgldYYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~g~~~pa-v 345 (465)
T 3net_A 269 FNLGVSELETVITGVRNLGVPDKRFCIDLAI--ARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPG-V 345 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEECTTC--CCCSSSEEEEEEEEEETTCGGGCCSSEEEEESSSSGGGTCSCCCE-E
T ss_pred HHHHHHHHHHHHHHHhcccccCceEEEccCc--cCCCcccCceEEEEEECCCCccceecccccHHHHhhhhcCCCCce-e
Confidence 0112333333 1 1 13 5666655 4789999983 12232 488 8
Q ss_pred eccccccHHHHHHHHHHhcCCCCCC-CCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcC
Q 007503 476 HRAILGSVERMFAILLEHYKGKWPF-WLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQ 554 (601)
Q Consensus 476 ~~ai~GGveRli~iL~E~~~g~~p~-~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g 554 (601)
|+|+ |+||++++|.|+ |.||. |.+|.+|+|+|++++...+|.++++.||++|++|++|+++.++++|+++|++.|
T Consensus 346 Gfai--GieRli~~L~e~--g~~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ve~d~~~~sl~~q~k~A~~~g 421 (465)
T 3net_A 346 GISI--GLTRLISRLLKA--GILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQG 421 (465)
T ss_dssp EEEE--EHHHHHHHHHHT--TSSCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHHT
T ss_pred eeec--cHHHHHHHHHHc--CCCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcC
Confidence 9999 999999999987 67997 899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcccccccC-eEEEEECCCCceecccHHHHHHHHHHHH
Q 007503 555 YNFILVVGEEEAKSG-QVSVRVRDQGDHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 555 ~~~iivvG~~E~~~~-~V~vr~~~~~~q~~v~l~el~~~l~~~~ 597 (601)
+||++|||++ +++| +|+||+|++++|..++++++++.+++.+
T Consensus 422 ~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 422 IRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp CCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred CCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 9999999999 9999 9999999999999999999999887653
No 18
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=3.9e-35 Score=318.20 Aligned_cols=267 Identities=17% Similarity=0.230 Sum_probs=198.7
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCc-E-EEEEEccCC
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGF-T-YELKLSTRP 388 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~-~-~~l~ls~r~ 388 (601)
+|+++|+|++++|.+||+|+++. +|.|||+|+|+|+||.+++ +|+| ++.++.++|+.||+ + |.+.+||
T Consensus 96 ~~~~~P~rl~~~g~vfR~e~p~~----gR~Ref~Q~d~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~~~~~i~i~~-- 166 (423)
T 1htt_A 96 LLYNQEQRLWYIGPMFRHERPQK----GRYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISEHVTLELNS-- 166 (423)
T ss_dssp CSTTCCEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHTCGGGCEEEEEE--
T ss_pred cccCCCeEEEEEcCEecCCCCCC----CccceeEEeeEEEECCCCchhhHH---HHHHHHHHHHHCCCCCCcEEEEcC--
Confidence 35689999999999999998876 7999999999999999998 9999 78999999999999 6 9999966
Q ss_pred CccCCChhhHHHHHHHHHHHHHHc--CC------Ccc---------ccCCCCccc--ccchhhhHH----HHHhhhhhh-
Q 007503 389 EKYLGDLATWEKAEAALTEALNEF--GK------PWQ---------INEGDGAFY--GPKIDISVS----DALKRKFQC- 444 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~--~~------~~~---------~~~g~~af~--gpki~~~~~----d~l~~~~~~- 444 (601)
+|+.+++..+...|.+++... .. .+. .+++..+++ +|++...+. +.+...++.
T Consensus 167 ---~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~~~~~l~~~~~~l 243 (423)
T 1htt_A 167 ---IGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLL 243 (423)
T ss_dssp ---CCCHHHHHHC---------------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred ---CCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHHHHHHHHHHHHHH
Confidence 455555544333343333210 00 000 112334555 677665432 222233332
Q ss_pred ----cceeeccCCCcccceeEeecC-----------------CC----------CcccceEEeccccccHHHHHHHHHHh
Q 007503 445 ----ATLQLDFQLPDRFNLGYSAED-----------------EA----------KTERPVMIHRAILGSVERMFAILLEH 493 (601)
Q Consensus 445 ----~ti~ld~~l~~~~~L~Y~t~~-----------------~g----------~~~~P~~i~~ai~GGveRli~iL~E~ 493 (601)
.++++|+.++ .+++||||. || +...|+ +|+|+ |+||++++|.|+
T Consensus 244 ~~~g~~i~~D~~l~--rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pa-vGf~i--gveRl~~~l~e~ 318 (423)
T 1htt_A 244 ESAGIAYTVNQRLV--RGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPA-VGFAM--GLERLVLLVQAV 318 (423)
T ss_dssp HTTTCCCEECTTCC--CSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCE-EEEEE--EHHHHHHHHHHH
T ss_pred HHcCCeEEEccccc--cchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCe-EEEEe--cHHHHHHHHHhc
Confidence 2567777765 578898864 11 134687 68999 999999999987
Q ss_pred cCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHc--CCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeE
Q 007503 494 YKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRA--GYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQV 571 (601)
Q Consensus 494 ~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~--Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V 571 (601)
|.+|+|.+|.||+|+|++++...+|.++++.||++ |++|++|+++.++++|+++|++.|+||+||||++|.++|+|
T Consensus 319 --~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~iiiG~~e~~~~~v 396 (423)
T 1htt_A 319 --NPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTA 396 (423)
T ss_dssp --STTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSEEEEECHHHHHHTEE
T ss_pred --CcCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeE
Confidence 44555679999999999988899999999999999 99999999889999999999999999999999999999999
Q ss_pred EEEECCCCceecccHHHHHHHHHHHH
Q 007503 572 SVRVRDQGDHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 572 ~vr~~~~~~q~~v~l~el~~~l~~~~ 597 (601)
+||+|++++|..++++++++.+++++
T Consensus 397 ~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 397 VVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp EEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred EEEECCCCCceEEcHHHHHHHHHHhh
Confidence 99999999999999999999987754
No 19
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=9.7e-36 Score=324.04 Aligned_cols=261 Identities=18% Similarity=0.288 Sum_probs=211.5
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE--EEEEEccCC--C
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT--YELKLSTRP--E 389 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~--~~l~ls~r~--~ 389 (601)
++|+|++++|.+||+|+++. +|.|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ |.+.+||+. .
T Consensus 97 ~lP~rl~~~g~vfR~erp~~----gR~REF~Q~d~ei~g~~~~~ad~E---~i~~~~~~l~~lgl~~~~~i~l~~~g~~~ 169 (434)
T 1wu7_A 97 QRPLRWYSFPKVWRYEEPQA----GRYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLQDIYEIRINSRKIME 169 (434)
T ss_dssp CSSEEEEECCEEECCCCSCS----SCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTTTTSEEEEEEEHHHHH
T ss_pred CCCeEEEEEcCeecCCCCCC----CCccceEEeeEEEEcCCChHhhHH---HHHHHHHHHHHcCCCCceEEEECChhhHH
Confidence 58999999999999998886 7999999999999999998 9999 799999999999997 999999984 2
Q ss_pred c---cCCChhhHHHHHHHHHHHHHHcC---------------CCccccCCCCccc--ccchhhhHH-------HHHhhhh
Q 007503 390 K---YLGDLATWEKAEAALTEALNEFG---------------KPWQINEGDGAFY--GPKIDISVS-------DALKRKF 442 (601)
Q Consensus 390 ~---~lG~~~~~~~~~~~L~~~L~~~~---------------~~~~~~~g~~af~--gpki~~~~~-------d~l~~~~ 442 (601)
. .+| ++.|. .|.+++++.. .+....++..+++ +|+++. +. +++.+..
T Consensus 170 ~~~~~~g-~~~~~----~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~ 243 (434)
T 1wu7_A 170 EIIGGMT-SSDPF----SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDE-MARITGKSSEEIARMA 243 (434)
T ss_dssp HHHHTTC-SSCHH----HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHH-HHHHTTCCCHHHHHHH
T ss_pred HHHHHhC-cHhHH----HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH-HHHHHhhHHHHHHHHH
Confidence 2 234 45553 4555555432 2222222233455 688765 53 4444433
Q ss_pred hhc---------ceeeccCCCcccceeEeecC----------------CCC----------cccceEEeccccccHHHHH
Q 007503 443 QCA---------TLQLDFQLPDRFNLGYSAED----------------EAK----------TERPVMIHRAILGSVERMF 487 (601)
Q Consensus 443 ~~~---------ti~ld~~l~~~~~L~Y~t~~----------------~g~----------~~~P~~i~~ai~GGveRli 487 (601)
++. ++++|+.++ .+++||||. ||. ...|+ +|+|+ |+||++
T Consensus 244 ~~~~~l~~~g~~~i~~D~~l~--rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa-~Gf~i--gveRl~ 318 (434)
T 1wu7_A 244 AVEDLLASYGVKNVRYDFSIV--RGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPA-VGFGM--GDAVIS 318 (434)
T ss_dssp HHHHHHHHTTCCCCEECTTCC--TTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCE-EEEEE--EHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCcc--cCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCe-EEEEE--cHHHHH
Confidence 221 377887776 478899763 111 24687 78999 999999
Q ss_pred HHHHHhcCCCC-CCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEccccc
Q 007503 488 AILLEHYKGKW-PFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEA 566 (601)
Q Consensus 488 ~iL~E~~~g~~-p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~ 566 (601)
++|.|+ |.| |. +|.||+|+|++++...+|.++++.||++|++|++|+++.++++|+++|++.|+||+||||++|.
T Consensus 319 ~~l~e~--~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~~~~iiiG~~e~ 394 (434)
T 1wu7_A 319 LLLKRE--NVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDL 394 (434)
T ss_dssp HHHHHT--TCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSEEEEEEHHHH
T ss_pred HHHHhc--CCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCEEEEECchhh
Confidence 999987 578 76 7899999999988899999999999999999999998899999999999999999999999999
Q ss_pred ccCeEEEEECCCCceecccHHHHHHHHHHHH
Q 007503 567 KSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 597 (601)
Q Consensus 567 ~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~ 597 (601)
++|+|+||+|.++++..++++++++.+++++
T Consensus 395 ~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~ 425 (434)
T 1wu7_A 395 ERGVVTIRNMYTGSQENVGLDSVVEHLISQA 425 (434)
T ss_dssp HTTEEEEEETTTCCEEEEEGGGHHHHHHHCC
T ss_pred hcCeEEEEECCCCCeEEEcHHHHHHHHHHHh
Confidence 9999999999999999999999999987765
No 20
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=1.4e-36 Score=332.54 Aligned_cols=273 Identities=17% Similarity=0.239 Sum_probs=201.0
Q ss_pred hhhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcEEEEEEccCCC
Q 007503 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE 389 (601)
Q Consensus 311 ~s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~~ 389 (601)
.+|+++|++++++|.+||+|.++. .||+|+|||+|+|+|+||.+++ +|+|+..++.++.++|+.||++|.+.++++..
T Consensus 143 ~s~~~lP~rl~~ig~~fR~E~~p~-~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~ 221 (458)
T 2i4l_A 143 KSYKSLPLNLYHIQWKFRDEQRPR-FGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGP 221 (458)
T ss_dssp CBGGGCSEEEEEEEEEECCCSSCB-TGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCS
T ss_pred hhccccCeeeEEecCEeeCCCCCC-CCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccc
Confidence 378899999999999999996654 8999999999999999997776 99998888899999999999999999988741
Q ss_pred -c-----------cCCChh----------hHHHHHH----HHHHHHHHcCCCccc----cCCCCc---ccccchhhhHHH
Q 007503 390 -K-----------YLGDLA----------TWEKAEA----ALTEALNEFGKPWQI----NEGDGA---FYGPKIDISVSD 436 (601)
Q Consensus 390 -~-----------~lG~~~----------~~~~~~~----~L~~~L~~~~~~~~~----~~g~~a---f~gpki~~~~~d 436 (601)
+ ..|++. .|+.++. .+.++++..+.-... ..|+.+ ++++++...-..
T Consensus 222 ~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl 301 (458)
T 2i4l_A 222 IGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGI 301 (458)
T ss_dssp SCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEE
T ss_pred cCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeee
Confidence 0 122211 0100000 011222111000000 111111 222222111001
Q ss_pred HHhhhhhhcceeeccCCCcccceeEeecCCCCcccce-EEeccccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEe
Q 007503 437 ALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPV-MIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCP 511 (601)
Q Consensus 437 ~l~~~~~~~ti~ld~~l~~~~~L~Y~t~~~g~~~~P~-~i~~ai~GGveRli~iL~E~~----~g~~p~~lsp~qv~Vip 511 (601)
+.|..|++++ ..+..+|..|.... | ...|+ |+|+|| |+||++++|.|++ ++.||.|++|.||+|+|
T Consensus 302 ~~G~iFelg~-----~~s~~~g~ry~~~~-G-~~~p~~~~gfgi--GveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~ 372 (458)
T 2i4l_A 302 EVGQIFYFGT-----KYSDSMKANVTGPD-G-TDAPIHGGSYGV--GVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILN 372 (458)
T ss_dssp EEEEEEEEET-----HHHHHTTCEEECTT-S-CEEECEEEEEEE--EHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEE
T ss_pred ccCcEEEecc-----cccccCCcEEECCC-C-CEeceEEeeecc--cHHHHHHHHHHhhccccCCcCCcccCCceEEEEe
Confidence 1223333322 22456788886543 3 45564 689999 9999999998986 56899999999999999
Q ss_pred cC---CCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHH
Q 007503 512 VS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIED 588 (601)
Q Consensus 512 ~~---~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~e 588 (601)
++ ++..++|.++++.||++|++|++|+++.++++|+++|++.|+||+||||++|+++|+|+||+|++++|..+++++
T Consensus 373 ~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~ 452 (458)
T 2i4l_A 373 LKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALAD 452 (458)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEETTT
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCCcEEEEeHHH
Confidence 96 567899999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 007503 589 LLKHF 593 (601)
Q Consensus 589 l~~~l 593 (601)
+++.+
T Consensus 453 l~~~l 457 (458)
T 2i4l_A 453 VVARL 457 (458)
T ss_dssp TTCC-
T ss_pred HHHhh
Confidence 87654
No 21
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=317.77 Aligned_cols=263 Identities=13% Similarity=0.079 Sum_probs=202.1
Q ss_pred cccchhhhhhhc-cCceeeeeecccccccc--CCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE
Q 007503 303 YPDKKRLKHAFA-ELPLRLADFGVLHRNEA--SGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (601)
Q Consensus 303 fp~~~~l~~s~r-elplr~~~vg~l~R~e~--~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~ 379 (601)
|..-+....+|+ ++|++++++|.+||+|. ++..+||+|+|||+|+++|+||.++++++|+..++.....+|+.||++
T Consensus 158 ~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~ 237 (459)
T 3ikl_A 158 LEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMS 237 (459)
T ss_dssp HHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333444556887 99999999999999997 577799999999999999999999999999999999999999999997
Q ss_pred -EEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCccccc--chhhhHHHHHhhhhhhcceeeccCCCcc
Q 007503 380 -YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGP--KIDISVSDALKRKFQCATLQLDFQLPDR 456 (601)
Q Consensus 380 -~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gp--ki~~~~~d~l~~~~~~~ti~ld~~l~~~ 456 (601)
..+.+.+.+.+ . +++..++++....|.++++|+ +.|+.+.+ .+ ..
T Consensus 238 ~~~~r~~~~~~e----e------------A~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~----~~------------~~ 285 (459)
T 3ikl_A 238 PSNFSSSDCQDE----E------------GRKGNKLYYNFPWGKELIETLWNLGDHELLH----MY------------PG 285 (459)
T ss_dssp GGGEEEEEECCS----S------------SSCEEEEEEECSSCEEEEEEEEEEETHHHHH----HS------------CS
T ss_pred hhhEEEeecCch----H------------HHhhcCeEEEcCCceEEEeeeeccchhhhhc----cc------------cc
Confidence 33344333211 0 122233344445566677766 55555433 11 24
Q ss_pred cceeEeecCCCCcccceEEeccccccHHHHHHHHHH-hcC----------------CCCCCCCCCceEEEEecC---CCc
Q 007503 457 FNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLE-HYK----------------GKWPFWLSPRQAIVCPVS---EKS 516 (601)
Q Consensus 457 ~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli~iL~E-~~~----------------g~~p~~lsp~qv~Vip~~---~~~ 516 (601)
++++|...++.+...|+|++.++ |++|+++++.| ++. +.||.|++|+||.|++.. ++.
T Consensus 286 ~~~~~~~~dg~~k~~P~vi~~s~--Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~ 363 (459)
T 3ikl_A 286 NVSKLHGRDGRKNVVPCVLSVNG--DLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLEL 363 (459)
T ss_dssp CSSSSCCBSSSCBCCCEEEEEEE--EHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTH
T ss_pred cCceeEccCCCeeeeeEEEEecc--cHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHH
Confidence 45555544523456899898888 99998755544 453 689999999999999442 678
Q ss_pred HHHHHHHHHHHHHcCCEEE--EeCC-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHH
Q 007503 517 QPYALQVRDHIYRAGYYVD--VDTT-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 593 (601)
Q Consensus 517 ~~~A~~i~~~Lr~~Gi~v~--~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l 593 (601)
.++|.+|++.||++|++|+ +|++ +.++|+||++|++.|+||+||||++|+++|+|+||+|++++|..|+++++++.|
T Consensus 364 ~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l 443 (459)
T 3ikl_A 364 RQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFL 443 (459)
T ss_dssp HHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHH
Confidence 9999999999999999999 7777 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007503 594 KEKLEA 599 (601)
Q Consensus 594 ~~~~~~ 599 (601)
.+++++
T Consensus 444 ~~~i~~ 449 (459)
T 3ikl_A 444 IKYISS 449 (459)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 888764
No 22
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=1e-35 Score=323.70 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=202.3
Q ss_pred cccchhhhhhhc-cCceeeeeeccccc---cccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCc
Q 007503 303 YPDKKRLKHAFA-ELPLRLADFGVLHR---NEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF 378 (601)
Q Consensus 303 fp~~~~l~~s~r-elplr~~~vg~l~R---~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~ 378 (601)
|..-+....+|+ +||++++++|.+|| +|.++ ..||+|+|||+|+|+|+||.++++..|+..++.++..+|..||+
T Consensus 148 ~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~-~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi 226 (454)
T 1g5h_A 148 LEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT-PSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAM 226 (454)
T ss_dssp HHTHHHHHHHTTTBSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhhHhhcccCCCEEEEEeeeeccCCcccccC-CCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCC
Confidence 334445556777 99999999999999 69888 59999999999999999999888989999999999999999999
Q ss_pred E-EEEEEccCCCccCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccc--cchhhhHHHHHhhhhhhcceeeccCCCc
Q 007503 379 T-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYG--PKIDISVSDALKRKFQCATLQLDFQLPD 455 (601)
Q Consensus 379 ~-~~l~ls~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~g--pki~~~~~d~l~~~~~~~ti~ld~~l~~ 455 (601)
+ ..+.+.+. |+.. +....++++....|.++++| ++.+..+. .++ .+.
T Consensus 227 ~~~~~r~~~~----------~~~~------a~~~~~ie~~~p~g~~e~~g~~~~td~~l~-----~~~---------~~s 276 (454)
T 1g5h_A 227 SPSNFSSADC----------QDEL------GRKGSKLYYSFPWGKEPIETLWNLGDQELL-----HTY---------PGN 276 (454)
T ss_dssp SGGGEEEEEE----------ECTT------SCEEEEEEEEETTEEEEEEEEEEEESHHHH-----HHS---------TTC
T ss_pred CceeEEecCC----------HHHH------HhcCCCcEEecCCCceEEEEecCCCHHHHH-----hcc---------CCc
Confidence 7 44444221 2211 11222334445556556654 44443332 122 245
Q ss_pred ccceeEeecCCCCcccceEEeccccccHHHHH-HHHHHhcC--------C--------CCCCCCCCceEEEE-ecC--CC
Q 007503 456 RFNLGYSAEDEAKTERPVMIHRAILGSVERMF-AILLEHYK--------G--------KWPFWLSPRQAIVC-PVS--EK 515 (601)
Q Consensus 456 ~~~L~Y~t~~~g~~~~P~~i~~ai~GGveRli-~iL~E~~~--------g--------~~p~~lsp~qv~Vi-p~~--~~ 515 (601)
+|++.|.++ ++..+|+|+|+++ |+||++ ++|++++. | +||+|++|.||+|+ |.+ ++
T Consensus 277 ~~~l~y~d~--~~~~~P~vi~~s~--Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~ 352 (454)
T 1g5h_A 277 VSTIQGRDG--RKNVVPCVLSVSG--DVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVE 352 (454)
T ss_dssp GGGSCEEET--TEEECCEEEEEEE--EHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHH
T ss_pred eeeEEEECC--CCcEeeEEEeCcc--cHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHH
Confidence 789999874 4467899999987 999997 55555543 4 89999999999999 886 66
Q ss_pred cHHHHHHHHHHHHHcCCEEE--EeCC-CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHH
Q 007503 516 SQPYALQVRDHIYRAGYYVD--VDTT-DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKH 592 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~Gi~v~--~d~~-~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~ 592 (601)
..++|.+|++.||++|++|+ +|++ +.++++|+++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.
T Consensus 353 ~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~ 432 (454)
T 1g5h_A 353 LRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDF 432 (454)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHH
Confidence 89999999999999999996 8886 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 007503 593 FKEKLEA 599 (601)
Q Consensus 593 l~~~~~~ 599 (601)
|.++++.
T Consensus 433 l~~~l~~ 439 (454)
T 1g5h_A 433 LVKYLAS 439 (454)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887764
No 23
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=4.9e-34 Score=309.21 Aligned_cols=264 Identities=20% Similarity=0.318 Sum_probs=198.8
Q ss_pred hh-ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 312 AF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 312 s~-relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
+| +++|+|++++|.+||+|+++. +|+|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ |++.+|
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~~----gR~reF~q~~~e~~~~~~~~~d~e---~i~~~~~~l~~lgl~~~~i~l~--- 164 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQK----GRYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGLKHLKLVIN--- 164 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTCCCEEEEEE---
T ss_pred cccCCCCeEEEEecCEeecCCCcC----CCcccEEEeeEEEECCCCchhHHH---HHHHHHHHHHHcCCCceEEEEc---
Confidence 56 789999999999999998887 8999999999999999998 9999 799999999999998 999995
Q ss_pred CccCCChhhHHHHHHHHHHHHHHc--CCC------cccc---------CCCCccc--ccchhhhH----HHHHhhh---h
Q 007503 389 EKYLGDLATWEKAEAALTEALNEF--GKP------WQIN---------EGDGAFY--GPKIDISV----SDALKRK---F 442 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~--~~~------~~~~---------~g~~af~--gpki~~~~----~d~l~~~---~ 442 (601)
.+|..+++..+.+.|.+++... ... ...+ +++.... +|++...+ .+.+... .
T Consensus 165 --~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~~l~~~l 242 (420)
T 1qe0_A 165 --SVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYL 242 (420)
T ss_dssp --ECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHHHHHHHH
T ss_pred --ccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHHHHHHHH
Confidence 4677777777767777776542 110 0001 1111111 34332211 1111111 1
Q ss_pred hhc--ceeeccCCCcccceeEeecC--------C---C-------------------CcccceEEeccccccHHHHHHHH
Q 007503 443 QCA--TLQLDFQLPDRFNLGYSAED--------E---A-------------------KTERPVMIHRAILGSVERMFAIL 490 (601)
Q Consensus 443 ~~~--ti~ld~~l~~~~~L~Y~t~~--------~---g-------------------~~~~P~~i~~ai~GGveRli~iL 490 (601)
... .+.+|. ....+++|||+. . | +...|+ +|+|+ |+||++++|
T Consensus 243 ~~~gi~~~~d~--~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~-vg~~i--gveRl~~~l 317 (420)
T 1qe0_A 243 DDLGIPYTEDP--NLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETG-IGFAL--SIERLLLAL 317 (420)
T ss_dssp HHHTCCCEECT--TCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEE-EEEEE--EHHHHHHHH
T ss_pred HHcCCeEEECc--ccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCE-EEEEe--cHHHHHHHH
Confidence 111 223443 334567777653 1 1 246788 58999 999999998
Q ss_pred HHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccccccCe
Q 007503 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQ 570 (601)
Q Consensus 491 ~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~~~~~ 570 (601)
|+.++.||. .+|.||+|+|++++...+|.++++.||++|++|++|+++.++++|+++|++.|+||+||||++|.++++
T Consensus 318 -e~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~iiig~~e~~~~~ 395 (420)
T 1qe0_A 318 -EEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNK 395 (420)
T ss_dssp -HHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTC
T ss_pred -HhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEECcchhhcCe
Confidence 666778997 899999999998778899999999999999999999988999999999999999999999999999999
Q ss_pred EEEEECCCCceecccHHHHHHHHH
Q 007503 571 VSVRVRDQGDHSNMSIEDLLKHFK 594 (601)
Q Consensus 571 V~vr~~~~~~q~~v~l~el~~~l~ 594 (601)
|+||+|++++|..++++++++.++
T Consensus 396 v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 396 IDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp EEEEETTTCCEEEECTTHHHHHHH
T ss_pred EEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999998875
No 24
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=9.1e-34 Score=314.93 Aligned_cols=276 Identities=18% Similarity=0.259 Sum_probs=195.8
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch--hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~--~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
+++.+|+|++++|.+||+|+++... +|+|||+|+|+|+||+.++ +|+| +|.++.++|+.||++ +.++|||+.
T Consensus 152 ~~~~~p~k~yyig~vfR~Erp~~~~--GR~ReF~Q~g~ei~G~~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~in~~~ 226 (517)
T 4g85_A 152 MNKLTNIKRYHIAKVYRRDNPAMTR--GRYREFYQCDFDIAGNFDPMIPDAE---CLKIMCEILSSLQIGDFLVKVNDRR 226 (517)
T ss_dssp HTTCSCEEEEEEEEEECCCC---------CCEEEEEEEEEESCCCTTHHHHH---HHHHHHHHHHHHCCCCEEEEEEEHH
T ss_pred hCCCCCceeEEEeceEeccCccccc--CccceeeeeceeccCCccchHHHHH---HHHHHHHHHHhhcCCcccccccchh
Confidence 4456799999999999999885433 6999999999999998776 7999 899999999999998 999999874
Q ss_pred -----CccCCChhhHHHHHHHHHHHHHHcCC-Ccc-----------ccC-------------CCCc-----ccccchhh-
Q 007503 389 -----EKYLGDLATWEKAEAALTEALNEFGK-PWQ-----------INE-------------GDGA-----FYGPKIDI- 432 (601)
Q Consensus 389 -----~~~lG~~~~~~~~~~~L~~~L~~~~~-~~~-----------~~~-------------g~~a-----f~gpki~~- 432 (601)
...+|..+.+- ..+...+++... .++ +.+ ++.. ...+++..
T Consensus 227 ~l~~~~~~~~~~~~~~---~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 303 (517)
T 4g85_A 227 ILDGMFAICGVSDSKF---RTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQN 303 (517)
T ss_dssp HHHHHHHHHTCCHHHH---HHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTC
T ss_pred hHHHHHHhhcchHHHH---HHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhccccccc
Confidence 12334433322 223333332211 010 000 0000 00011100
Q ss_pred ----hHHHHHhhhhhhcc-----eeeccCCCcccceeEeecC-------------------------C------------
Q 007503 433 ----SVSDALKRKFQCAT-----LQLDFQLPDRFNLGYSAED-------------------------E------------ 466 (601)
Q Consensus 433 ----~~~d~l~~~~~~~t-----i~ld~~l~~~~~L~Y~t~~-------------------------~------------ 466 (601)
...+.+...++.+. ..+.|++...+|++||||. |
T Consensus 304 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f~~ 383 (517)
T 4g85_A 304 KQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDP 383 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHHHhcc
Confidence 00111222222111 1223344456789999864 0
Q ss_pred CCcccceEEeccccccHHHHHHHHHHhcCC-CCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC-CCcHH
Q 007503 467 AKTERPVMIHRAILGSVERMFAILLEHYKG-KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DRKIQ 544 (601)
Q Consensus 467 g~~~~P~~i~~ai~GGveRli~iL~E~~~g-~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~-~~~l~ 544 (601)
++...|+ ||+|+ |+||++++|.++..+ .+|.|.+|.+|+|++++++...+|.+|++.||++|++|++++. +.+++
T Consensus 384 ~G~~~pa-vGfa~--gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~ 460 (517)
T 4g85_A 384 KGRKVPC-VGLSI--GVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLL 460 (517)
T ss_dssp SCCCCCE-EEEEE--CHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCHH
T ss_pred CCCCCCc-ccccc--hHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHH
Confidence 1245687 89999 999999999776422 3555667899999999999999999999999999999999874 56899
Q ss_pred HHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHH
Q 007503 545 KKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 545 kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~ 598 (601)
+||++|++.|+||+||||++|+++|+|+||||.+|+|.+|+++++++.|++.+.
T Consensus 461 ~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 461 NQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp HHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988753
No 25
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=303.71 Aligned_cols=273 Identities=18% Similarity=0.262 Sum_probs=194.4
Q ss_pred hhccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch--hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~--~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
+++.+|+|++|+|.+||+|+++. +.+|.|||+|+|+|+||+.++ +|+| +|.++.++|+.+|++ +.++|||+.
T Consensus 99 ~~~~~p~k~~y~g~vfR~erp~~--~~gR~Ref~Q~g~ei~G~~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~i~~~~ 173 (464)
T 4g84_A 99 MNKLTNIKRYHIAKVYRRDNPAM--TRGRYREFYQCDFDIAGNFDPMIPDAE---CLKIMCEILSSLQIGDFLVKVNDRR 173 (464)
T ss_dssp HTTCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHHHH---HHHHHHHHHHHHTCCCEEEEEEEHH
T ss_pred hcCCCCceeEEEecceeccCCcc--ccCccceeeecceeccCCccchhhHHH---HHHHHHHHHHHhCCCCcceeecchh
Confidence 44668999999999999998753 338999999999999998765 7999 899999999999998 999998874
Q ss_pred C-----ccCCChhhHHHHHHHHHHHHHHcCC-Ccc-----------ccC-------------CCCc-----ccccchhh-
Q 007503 389 E-----KYLGDLATWEKAEAALTEALNEFGK-PWQ-----------INE-------------GDGA-----FYGPKIDI- 432 (601)
Q Consensus 389 ~-----~~lG~~~~~~~~~~~L~~~L~~~~~-~~~-----------~~~-------------g~~a-----f~gpki~~- 432 (601)
. ..+|..+.+ ...+...+++... .++ +.+ ++.. ...+++..
T Consensus 174 ~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 250 (464)
T 4g84_A 174 ILDGMFAICGVSDSK---FRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQN 250 (464)
T ss_dssp HHHHHHHHHTCCHHH---HHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHHHTTCHHHHTC
T ss_pred hHHHHHHhhcCcHHH---HHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhccccccc
Confidence 1 223333322 1222223322110 000 000 0000 00011100
Q ss_pred ----hHHHHHhhhhhhc-------ceeeccCCCcccceeEeecC-------------------------CC---------
Q 007503 433 ----SVSDALKRKFQCA-------TLQLDFQLPDRFNLGYSAED-------------------------EA--------- 467 (601)
Q Consensus 433 ----~~~d~l~~~~~~~-------ti~ld~~l~~~~~L~Y~t~~-------------------------~g--------- 467 (601)
...+.+...++.+ .+.+| +...+|++||||. ||
T Consensus 251 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~d--~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~~~ 328 (464)
T 4g84_A 251 KQALEGLGDLKLLFEYLTLFGIDDKISFD--LSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMF 328 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGEEEE--TTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCSTGGGT
T ss_pred HHHHHHHHHHHHHHhHHHhhCCCcceeec--ccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhHHHHHh
Confidence 0011122222211 23344 4446789999864 01
Q ss_pred ---CcccceEEeccccccHHHHHHHHHHhcCCCCC--CCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC-CC
Q 007503 468 ---KTERPVMIHRAILGSVERMFAILLEHYKGKWP--FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DR 541 (601)
Q Consensus 468 ---~~~~P~~i~~ai~GGveRli~iL~E~~~g~~p--~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~-~~ 541 (601)
+...|+ +|+|+ |+||++++|.++.. .|| .|.++.+|+|++.+++...+|.++++.||++|++|++|+. +.
T Consensus 329 ~~~g~~~pa-vGfai--gieRl~~~l~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~ 404 (464)
T 4g84_A 329 DPKGRKVPC-VGLSI--GVERIFSIVEQRLE-ALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNP 404 (464)
T ss_dssp STTCCCCCE-EEEEE--CHHHHHHHHHHHHH-TTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSC
T ss_pred ccCCCCCCC-ccccc--cHHHHHHHHHHhcc-ccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 235677 89999 99999999987743 343 3456789999999999999999999999999999999874 56
Q ss_pred cHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCCCceecccHHHHHHHHHHHHH
Q 007503 542 KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 598 (601)
Q Consensus 542 ~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~~~q~~v~l~el~~~l~~~~~ 598 (601)
++++|+++|++.|+||+||||++|+++|+|+||||.+|+|.+|+++++++.|++.+.
T Consensus 405 ~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 405 KLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp CHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999998764
No 26
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.98 E-value=3.4e-32 Score=296.85 Aligned_cols=261 Identities=19% Similarity=0.143 Sum_probs=179.6
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCc--E-EEEEEccCC
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGF--T-YELKLSTRP 388 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~--~-~~l~ls~r~ 388 (601)
++++|+|++++|.+||+|+++. +|.|||+|+|+|+||.+++ +|+| +|.++.++|+.||+ + |++.||||.
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~~----gR~ReF~Q~g~ei~G~~~~~~DaE---vi~l~~~~l~~lgl~~~~~~i~in~~~ 191 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAITR----GRRREHYQWNMDIVGVKSVSAEVE---LVCAACWAMRSLGLSSKDVGIKVNSRK 191 (456)
T ss_dssp TCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHHHH---HHHHHHHHHHHTTCCTTTEEEEEEEHH
T ss_pred ccCCCEEEEEeccEEecCCCCC----CCccceEEEEEEEEcCCChHhhHH---HHHHHHHHHHHcCCCCCceEEEEcCHH
Confidence 4578999999999999999987 8999999999999999998 9999 89999999999999 5 999999985
Q ss_pred C-----ccCCChhhH-HHH-----------HHHHHHHHHHcCCCcccc------CCCCcccccchhhhH------HHHHh
Q 007503 389 E-----KYLGDLATW-EKA-----------EAALTEALNEFGKPWQIN------EGDGAFYGPKIDISV------SDALK 439 (601)
Q Consensus 389 ~-----~~lG~~~~~-~~~-----------~~~L~~~L~~~~~~~~~~------~g~~af~gpki~~~~------~d~l~ 439 (601)
. ..+|.++.. ... ...+++.|...+++-+.. ...+ -.|++...+ .+++.
T Consensus 192 il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~--~~~~l~~~l~~~~~~~~~L~ 269 (456)
T 3lc0_A 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLK--SIDEIAQRVGEEHEAVKELR 269 (456)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCC--SHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccC--CHHHHHHHHhHHHHHHHHHH
Confidence 1 224443221 110 112333343333221000 0000 012221111 23344
Q ss_pred hhhhhc-------ceeeccCCCcccceeEeecC----------------CC----------Cc-ccceEEeccccccHHH
Q 007503 440 RKFQCA-------TLQLDFQLPDRFNLGYSAED----------------EA----------KT-ERPVMIHRAILGSVER 485 (601)
Q Consensus 440 ~~~~~~-------ti~ld~~l~~~~~L~Y~t~~----------------~g----------~~-~~P~~i~~ai~GGveR 485 (601)
..++.+ .+.+| +...+||+||||. || +. ..|+ +|+|+ |+||
T Consensus 270 ~l~~~l~~~gi~~~~~~D--~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~Pa-vGFai--g~eR 344 (456)
T 3lc0_A 270 QFFEQVEAYGYGDWVLFD--ASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPC-AGFGF--GDCV 344 (456)
T ss_dssp HHHHHHHHHTCGGGEEEC--TTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCCE-EEEEE--ESSH
T ss_pred HHHHHHHHcCCCceEEEe--cCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCCE-EEEEe--EHHH
Confidence 333321 13444 4456799999975 11 12 4788 89999 9999
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEcccc
Q 007503 486 MFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEE 565 (601)
Q Consensus 486 li~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E 565 (601)
|+.+|.+. +..|....+.+++|++.+++...+|.++++.||++|++|+++..+.++++++++|++.|++|++|||++|
T Consensus 345 l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ga~~vviiGe~E 422 (456)
T 3lc0_A 345 IVELLQEK--RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEE 422 (456)
T ss_dssp HHHHHHHT--TCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTTEEEEEEECHHH
T ss_pred HHHHHHhc--CCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcCCCEEEEECCch
Confidence 99999765 4444323457899999999888999999999999999999999889999999999999999999999999
Q ss_pred cccCeEEEEECCCCceecccHHHH
Q 007503 566 AKSGQVSVRVRDQGDHSNMSIEDL 589 (601)
Q Consensus 566 ~~~~~V~vr~~~~~~q~~v~l~el 589 (601)
+++|+|+|||+.+++|..+++++.
T Consensus 423 ~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 423 WERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp HHTTEEEEEECC------------
T ss_pred hcCCeEEEEECCCCCeEEeccccc
Confidence 999999999999999999988764
No 27
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=3.4e-27 Score=221.62 Aligned_cols=128 Identities=18% Similarity=0.259 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC--CceEEcCccccCC-cEEEEEEcCCCCCCHhHHHHHHHHHHHHh--CCCeEEEEeC
Q 007503 149 EGRDTFWHSSAHILGQAIEQQYG--CKLCIGPCTTRGE-GFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVT 223 (601)
Q Consensus 149 eG~~vy~hS~~hlL~~A~~~~fg--~~l~ig~~i~~~~-Gfy~d~~~~~~~~t~edl~~Ie~~m~~ii--~~pi~r~~v~ 223 (601)
+|.+++|||++|||++|++++|| +.++++++++ + |+||||++ +.++|++|+.+||++|+++| |+||++.+++
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~--~~~~~~~~d~-~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~ 78 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVK--GNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELP 78 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEE--TTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEE
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceec--CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 58999999999999999999998 7788898887 5 89999987 56899999999999999999 9999999999
Q ss_pred HHHHHHhhhcChhhhhhcccCCCC-CcEEEEEeCCe-eeeccCCCCCCCCCcceEEEeeec
Q 007503 224 RDQALEMFSDNNFKVEIINDLPAD-KTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKAS 282 (601)
Q Consensus 224 ~eeA~~~F~~~~~K~~li~~~~~~-~~v~vy~~g~~-~D~c~Gphvp~Tg~i~~f~l~~~~ 282 (601)
++||+++|+.+.++.+. +|++ +.|++|+||+| +|+|+||||||||+|+.|+|+++.
T Consensus 79 ~~eA~~~f~~~~~~~~~---~~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~ 136 (157)
T 1v4p_A 79 REEAEKMFGEDMYDLFP---VPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVR 136 (157)
T ss_dssp HHHHHHHHGGGGSCSSC---CCTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEE
T ss_pred HHHHHHhhCcccccccc---CCCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEE
Confidence 99999999876555432 2322 58999999999 999999999999999999999543
No 28
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.85 E-value=1.2e-21 Score=210.12 Aligned_cols=232 Identities=12% Similarity=0.090 Sum_probs=151.2
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCCC-
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE- 389 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~~- 389 (601)
++++|+|++++|++||+|+++. +|.|||+|+|+|+||.+++ +|+| +|.++.++|+.||++ ++++|||+..
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~----gR~Ref~Q~g~ei~G~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~l~~~~i~ 171 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEG----GKPAEFEQLGVELIGDGTASADGE---VIALMIAALKRAGLSEFKVAIGHVGYV 171 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC-------CCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTCCSEEEEEEEHHHH
T ss_pred cCCCCeEEEEEcCEEeCCCCCC----CCCCccEEeEEEEECCCChHhHHH---HHHHHHHHHHHCCCCceEEEecCHHHH
Confidence 3578999999999999999987 8999999999999999998 9999 899999999999997 9999999851
Q ss_pred ----ccCCChhhHHHHHHHHHHHHHHc------------CCC------ccccC---CCCccc--ccchh-----hhHHHH
Q 007503 390 ----KYLGDLATWEKAEAALTEALNEF------------GKP------WQINE---GDGAFY--GPKID-----ISVSDA 437 (601)
Q Consensus 390 ----~~lG~~~~~~~~~~~L~~~L~~~------------~~~------~~~~~---g~~af~--gpki~-----~~~~d~ 437 (601)
..+|..+. ....+.++|++. ++. +..++ |+.... .|++. ....+.
T Consensus 172 ~~ll~~~~~~~~---~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~~~~~~~l~~ 248 (400)
T 3od1_A 172 NALLMDVVGNEQ---RADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEKGKTALAE 248 (400)
T ss_dssp HHHHHHHHCCHH---HHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHHHHHcCCCHH---HHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcChhhHHHHHH
Confidence 12232222 233444444443 221 01111 111110 12221 011122
Q ss_pred Hhhhhhhc-------ceeeccCCCcccceeEeecC---------------CCC---------cccceEEeccccccHHHH
Q 007503 438 LKRKFQCA-------TLQLDFQLPDRFNLGYSAED---------------EAK---------TERPVMIHRAILGSVERM 486 (601)
Q Consensus 438 l~~~~~~~-------ti~ld~~l~~~~~L~Y~t~~---------------~g~---------~~~P~~i~~ai~GGveRl 486 (601)
+...++.+ .+.+| +...+|++||||. ||. ...|+ +|+|+ |+|||
T Consensus 249 l~~l~~~L~~~gi~~~~~~D--~~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~~pa-vGfai--glerL 323 (400)
T 3od1_A 249 MTKLYEVLESYGASEYVKFD--LTLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHRPAQA-TGFGV--RIDLL 323 (400)
T ss_dssp HHHHHHHHHHTTCGGGEEEE--TTCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTCCCCE-EEEEE--EHHHH
T ss_pred HHHHHHHHHHcCCCceEEEe--CCccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCCCCCE-EEEEe--eHHHH
Confidence 22222211 13445 4446799999975 122 24788 89999 99999
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhcCCcEEEEEccccc
Q 007503 487 FAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEA 566 (601)
Q Consensus 487 i~iL~E~~~g~~p~~lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~g~~~iivvG~~E~ 566 (601)
+.+|.+. +..+. ..+|+| +.+++....|.+++++||++|++|+++..+.. ... +|...|+..++++.+++-
T Consensus 324 ~~~l~~~--~~~~~---~~~v~v-~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 324 VEALNGE--IISNG---HEQTCI-LFSNERRFEAIELARKKRANGEAVVLQDLAGV-TDV--DAMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp HHHHCC-----------CCCEEE-EECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC-SCH--HHHHTTSSEEEEECSCC-
T ss_pred HHHHHhc--CCCCC---CCeEEE-EECcHHHHHHHHHHHHHHHCCCEEEEEecCCh-hHH--HHHHcCCCEEEEEecCCC
Confidence 9998554 23321 123665 47777889999999999999999999875322 111 889999999999987765
Q ss_pred cc
Q 007503 567 KS 568 (601)
Q Consensus 567 ~~ 568 (601)
..
T Consensus 395 ~~ 396 (400)
T 3od1_A 395 RG 396 (400)
T ss_dssp --
T ss_pred CC
Confidence 43
No 29
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.83 E-value=3.7e-20 Score=208.76 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=123.8
Q ss_pred cCEEeec-cccc-cCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHh
Q 007503 124 NGVLWDM-TRPL-EADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPD 200 (601)
Q Consensus 124 ng~l~dL-~~~l-~~d~~le-~l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~e 200 (601)
+|.++.. ..++ ..+..|+ -||++.+ -..++|||++|||++|++++||.++.+.++.-.++|+||||.. ...+|++
T Consensus 566 ~g~ivH~~~~~~~~~Gd~V~~~VD~~rR-~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~-~~~lT~e 643 (739)
T 2ztg_A 566 DGVVLHVVKGAKPEVGTKVKGVIDSDVR-WRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH-FRRPSEE 643 (739)
T ss_dssp TTEEEEECCSSCCCTTCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC-SSCCCHH
T ss_pred CCEEEEEEcccCCCCCCEEEEEEcHHHH-HHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeC-CCCCCHH
Confidence 6666543 2233 2333444 3665544 2458899999999999999999888777766213899999986 5689999
Q ss_pred HHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcc-cCCCCCcEEEEEeCCeeeeccCCCCCCCCCcceEE
Q 007503 201 HFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIN-DLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFG 277 (601)
Q Consensus 201 dl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~-~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~ 277 (601)
++++||++||++| |+||++.+++++||.++| +..++. ..+.++.|+||+||+++|+|+||||+|||+|+.|+
T Consensus 644 dL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~-----~l~L~~~~~~~~d~VRVV~IGd~~elCGGTHV~nTgeIg~fk 718 (739)
T 2ztg_A 644 EIKEIEMLANREILANKPIKWEWMDRIEAERKF-----GFRLYQGGVPPGRKIRVVQVGDDVQACGGTHCRSTGEIGMLK 718 (739)
T ss_dssp HHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHH-----CGGGGTTCCCCSSEEEEEEETTEEEECCSCCCSBGGGGCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhC-----CHhhhcCCCCCCCeEEEEEECCeeeCcCCcCcccHhHcCcEE
Confidence 9999999999999 999999999999999986 456664 23356789999999999999999999999999999
Q ss_pred Eeeecc
Q 007503 278 CLKASS 283 (601)
Q Consensus 278 l~~~~~ 283 (601)
|+++++
T Consensus 719 Ils~s~ 724 (739)
T 2ztg_A 719 ILKVES 724 (739)
T ss_dssp EEEEEE
T ss_pred EEEEeE
Confidence 999874
No 30
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.83 E-value=3e-20 Score=185.85 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=121.4
Q ss_pred EcCEEee-ccccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHh
Q 007503 123 VNGVLWD-MTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPD 200 (601)
Q Consensus 123 Vng~l~d-L~~~l~~d~~le~-l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~e 200 (601)
.+|.++. +..++..+..++. |||+.+ -.-+.|||++|||++|++++||.+ ..|+.++ .++|||||. .++|++
T Consensus 64 ~~g~i~H~~~~~l~~g~~V~~~vD~~rR-~~~~~~HTa~HLL~~al~~~~g~~-~~G~~v~-~~~~r~Df~---~~lt~e 137 (241)
T 3kew_A 64 EEGKVYHVLEKEPKKLKNLQCELDWERR-FDGMQQHLGQHLLSGCFYDLFGAN-TCGFHLG-KEISTVDIV---GFLDEK 137 (241)
T ss_dssp ETTEEEEEESSCCCCCSSEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEC-SSCEEEEEE---SCCCHH
T ss_pred eCCEEEEEECCcCCCCCEEEEEECHHHh-hhHHHHHHHHHHHHHHHHHHCCCC-eEecccc-CCeEEEEEC---CCCCHH
Confidence 4777664 4466766667774 776644 345779999999999999999876 4777774 279999997 579999
Q ss_pred HHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCe-eeeccCCCCCCCCCcceEE
Q 007503 201 HFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFG 277 (601)
Q Consensus 201 dl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i~~f~ 277 (601)
++++||++||++| |+||++.+++++||.+++.. + +.+. .++.|++|++|+| +++|+||||+|||+|+.|+
T Consensus 138 ~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~---~--~~e~--~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fk 210 (241)
T 3kew_A 138 TIREAEKEANRLIFENLEVKSYAPSKKELKKVKTR---R--ALPK--TDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIK 210 (241)
T ss_dssp HHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCS---S--CCCC--CSSCCCEEEETTTEEEECCSCCCSBSGGGCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChh---h--cCCc--cCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEE
Confidence 9999999999999 99999999999999987521 1 2221 3578999999998 8999999999999999999
Q ss_pred Eeeecc
Q 007503 278 CLKASS 283 (601)
Q Consensus 278 l~~~~~ 283 (601)
|++.++
T Consensus 211 I~~~~~ 216 (241)
T 3kew_A 211 IRRWEK 216 (241)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999875
No 31
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.77 E-value=3.4e-18 Score=192.83 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=119.7
Q ss_pred cCEEeecc---ccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCCce-EEcCccccCCcEEEEEEcCCCCCC
Q 007503 124 NGVLWDMT---RPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKL-CIGPCTTRGEGFYYDAFYGDLGLN 198 (601)
Q Consensus 124 ng~l~dL~---~~l~~d~~le~-l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~~l-~ig~~i~~~~Gfy~d~~~~~~~~t 198 (601)
+|.++..- -++..+..|+. ||++.+ -..+.|||++|||++|++++||.++ ..|+.+. .+++||||.. ...+|
T Consensus 578 ~g~ivH~~~~~~~l~vGd~V~~~VD~~rR-~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~-~d~~rfDFs~-~~~lt 654 (752)
T 2zze_A 578 GXVIIHXVEDPGAFXEGMIVHGXIDWXRR-IQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLT-TDWARLDISH-YXRIS 654 (752)
T ss_dssp TTEEEEEESCGGGCCTTCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEC-SSCEEEEEEC-SSCCC
T ss_pred CcEEEEeccccCccCcCCeEEEEEeHHHH-HHHHHHhHHHHHHHHHHHHHcCCceeeecCccc-CCceEEEEeC-CCCCC
Confidence 55555432 22333444553 665544 2347899999999999999998765 6677763 2799999986 56899
Q ss_pred HhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcc-cCCCCCcEEEEEeCCe-eeeccCCCCCCCCCcc
Q 007503 199 PDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIN-DLPADKTITVYRCGPL-VDLCRGPHIPNTSFVK 274 (601)
Q Consensus 199 ~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~-~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i~ 274 (601)
++++++||++||++| |+||++.+++++||.+++... +.. ..+.++.|+||++|+| +++|+||||+|||+|+
T Consensus 655 ~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~-----lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG 729 (752)
T 2zze_A 655 EEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFR-----LYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVG 729 (752)
T ss_dssp HHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGG-----GCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGC
T ss_pred HHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhh-----hhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHcc
Confidence 999999999999999 999999999999999987532 221 1224578999999998 8999999999999999
Q ss_pred eEEEeeecc
Q 007503 275 GFGCLKASS 283 (601)
Q Consensus 275 ~f~l~~~~~ 283 (601)
.|+|++.++
T Consensus 730 ~fKIls~s~ 738 (752)
T 2zze_A 730 PIXILRTER 738 (752)
T ss_dssp CEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999998864
No 32
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.77 E-value=1.7e-18 Score=170.52 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=105.3
Q ss_pred cCEEeec---cccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCC---ceEEcCccccCCcEEEEEEcCCCC
Q 007503 124 NGVLWDM---TRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGC---KLCIGPCTTRGEGFYYDAFYGDLG 196 (601)
Q Consensus 124 ng~l~dL---~~~l~~d~~le~-l~~~~~eG~~vy~hS~~hlL~~A~~~~fg~---~l~ig~~i~~~~Gfy~d~~~~~~~ 196 (601)
+|.++.. ..++..+..++. ||++.+ ...+.|||++|||++|++++||. +.. |+.+. .+++||||.. +.+
T Consensus 64 ~~~i~H~~~~~~~l~~g~~v~~~vD~~rR-~~~~~~HTA~HlL~~Al~~~~g~~~~~~~-g~~v~-~~~~r~Df~~-~~~ 139 (216)
T 2e1b_A 64 EGNVWHVVKEPEKFKVGDEVELKIDWDYR-YKLMRIHTGLHLLEHVLNEVLGEGNWQLV-GSGMS-VEKGRYDIAY-PEN 139 (216)
T ss_dssp TCCCEEEESCGGGCCSSSCEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHTTTSCEEE-ECCBC-SSEEEEEEEC-SSC
T ss_pred CCEEEEEEccCCCcCCCCEEEEEECHHHH-HHHHHHhHHHHHHHHHHHHHcCCccceee-eeeEc-CCcEEEEEeC-CCC
Confidence 5555432 224555556664 666544 56688999999999999999987 655 55553 2899999986 456
Q ss_pred CCHhHHHHHHHHHHHHh--CCCeEEEEeCHHHHHHhhhcChhhhhhcccCCCCCcEEEEEeCCe-eeeccCCCCCCCCCc
Q 007503 197 LNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFV 273 (601)
Q Consensus 197 ~t~edl~~Ie~~m~~ii--~~pi~r~~v~~eeA~~~F~~~~~K~~li~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~i 273 (601)
+|++ +++||++||++| |+||++.++++ +++|+||+| +++|+||||+|||+|
T Consensus 140 lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~-------------------------vRvv~ig~~~~~~CgGtHV~~TgeI 193 (216)
T 2e1b_A 140 LNKY-KEQIISLFNKYVDEGGEVKIWWEGD-------------------------RRYTQIRDFEVIPCGGTHVKDIKEI 193 (216)
T ss_dssp GGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------------------------CEEEEETTSCEECCCSCCCSBGGGT
T ss_pred CCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------------------------EEEEEECCEEEECCCCCCcccHhhC
Confidence 8886 999999999999 99999998875 789999998 899999999999999
Q ss_pred ceEEEeeecc
Q 007503 274 KGFGCLKASS 283 (601)
Q Consensus 274 ~~f~l~~~~~ 283 (601)
+.|+|++.++
T Consensus 194 g~fkI~~~~~ 203 (216)
T 2e1b_A 194 GHIKKLKRSS 203 (216)
T ss_dssp CCEEEEEEEE
T ss_pred ceEEEEEEeE
Confidence 9999998764
No 33
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.72 E-value=1.4e-17 Score=148.97 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=92.1
Q ss_pred CCCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHHhcCCcEEEEEcccccccCeEEEEECCC-
Q 007503 502 LSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQ- 578 (601)
Q Consensus 502 lsp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~~~g~~~iivvG~~E~~~~~V~vr~~~~- 578 (601)
--|.||.|+|+++++.+||.+|++.|+++|++|++|.+ +.+|+++|++|++.++||++|||++|.++++|+||.+..
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~ 85 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCC
Confidence 35899999999999999999999999999999999997 899999999999999999999999999999999999987
Q ss_pred -CceecccHHHHHHHHHHHHHh
Q 007503 579 -GDHSNMSIEDLLKHFKEKLEA 599 (601)
Q Consensus 579 -~~q~~v~l~el~~~l~~~~~~ 599 (601)
+++..++++++++.|.....+
T Consensus 86 ~~e~~~m~lde~i~~l~~~~~~ 107 (130)
T 1v95_A 86 PQEHRNMPQADAMVLVARNYER 107 (130)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHH
T ss_pred CCccCccCHHHHHHHHHHHHHH
Confidence 888999999999998766554
No 34
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.70 E-value=1.5e-18 Score=187.26 Aligned_cols=161 Identities=22% Similarity=0.364 Sum_probs=121.6
Q ss_pred hhccCceeeeeeccccccccCC---CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEE-EEEccC
Q 007503 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYE-LKLSTR 387 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g---~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~-l~ls~r 387 (601)
+|+++|+|++++|.+||+|.++ ...||+|+|||+|.|+|+||+++++++|+..++.++.++|+.|||+|+ +.++++
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~g 325 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTG 325 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCC
Confidence 5789999999999999999986 678999999999999999999998888888899999999999999977 667665
Q ss_pred CCc----cCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEee
Q 007503 388 PEK----YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSA 463 (601)
Q Consensus 388 ~~~----~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t 463 (601)
+.+ ..++.+.|. |+.+ .+++..+|.+. .||+ +.+|++.|.+
T Consensus 326 dlg~~a~~~~diE~w~--------------------p~~~-------------~~~ei~s~sn~-~Dfq-a~r~~i~y~~ 370 (425)
T 2dq3_A 326 DLGFSAAKTYDIEVWF--------------------PSQN-------------KYREISSCSNC-EDFQ-ARRMNTRFKD 370 (425)
T ss_dssp TCCTTCSEEEEEEEEE--------------------GGGT-------------EEEEEEEEEEC-TTHH-HHHHTEEEEC
T ss_pred cCCChHHhccchhhcc--------------------chhH-------------HHHHHHHcCCc-cccC-cccCCeEEEC
Confidence 311 112222221 1110 11222344442 5776 7899999997
Q ss_pred cCCCCcccceEEecccccc---HHHHHHHHHHhcC---C--CCCCCCCCce-EEEEe
Q 007503 464 EDEAKTERPVMIHRAILGS---VERMFAILLEHYK---G--KWPFWLSPRQ-AIVCP 511 (601)
Q Consensus 464 ~~~g~~~~P~~i~~ai~GG---veRli~iL~E~~~---g--~~p~~lsp~q-v~Vip 511 (601)
.+ |+.. .++| ++.|+ ++|++++|+|+++ | .||.|++|++ +-+|+
T Consensus 371 ~~-~~k~--~~vH-tl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 371 SK-TGKN--RFVH-TLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp TT-TCSE--EECE-EEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred CC-CCee--EEEE-EEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 66 3222 2578 88885 9999999999986 6 8999999998 65554
No 35
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-18 Score=144.29 Aligned_cols=82 Identities=45% Similarity=0.847 Sum_probs=77.6
Q ss_pred CCCCCCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHH
Q 007503 78 SLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHS 157 (601)
Q Consensus 78 ~~~~~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~vy~hS 157 (601)
++++.+|+|++|||+.+++..|++|+.|+|+.++..+++.+++|+|||++|||++||+.||+|+||++++++|+++||||
T Consensus 6 ~~~~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg~~i~rHS 85 (88)
T 1wwt_A 6 SGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYSGP 85 (88)
T ss_dssp CCSCCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCCSCSCCCC
T ss_pred cCCCCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHHhhheecc
Confidence 45678899999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 007503 158 SA 159 (601)
Q Consensus 158 ~~ 159 (601)
++
T Consensus 86 ~~ 87 (88)
T 1wwt_A 86 SS 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 36
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.64 E-value=5.6e-17 Score=176.05 Aligned_cols=156 Identities=19% Similarity=0.290 Sum_probs=115.5
Q ss_pred hhccCceeeeeeccccccccC---CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccCC
Q 007503 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~---g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r~ 388 (601)
+|+++|++++++|.+||+|.+ +...||+|+|||+|.|+|+||+++++++|+..++.++.++|+.|||+|++...+.+
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~g 346 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTG 346 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCceEEEECCCc
Confidence 688999999999999999998 45799999999999999999999889999999999999999999999887775543
Q ss_pred CccCCChhhHHHHHHHHHHHHHHcCCCcc-ccCCCCcccccchhhhHHHHHhhhhhhccee--eccCCCcccceeEeec-
Q 007503 389 EKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQ--LDFQLPDRFNLGYSAE- 464 (601)
Q Consensus 389 ~~~lG~~~~~~~~~~~L~~~L~~~~~~~~-~~~g~~af~gpki~~~~~d~l~~~~~~~ti~--ld~~l~~~~~L~Y~t~- 464 (601)
+...|....|+ .+ ..|+.+ +..++.+.. .||+ +.+|++.|.+.
T Consensus 347 dlg~~a~~~~d----------------iE~w~p~~~----------------~~~ei~s~s~c~Dfq-arR~~iry~~~~ 393 (455)
T 2dq0_A 347 DLGYVAAKKYD----------------IEAWMPGQG----------------KFREVVSASNCTDWQ-ARRLNIRFRDRT 393 (455)
T ss_dssp GSCSSCSEEEE----------------EEEEETTTT----------------EEEEEEEEEECTTTT-HHHHTEEEESST
T ss_pred cccChhhceee----------------eeeecCcCC----------------cccEEEeeccchhhH-hhccCcEEecCC
Confidence 22222111110 00 012222 222333222 3565 67999999876
Q ss_pred CCCCcccceEEe----ccccccHHHHHHHHHHhcC---C--CCCCCCCCce
Q 007503 465 DEAKTERPVMIH----RAILGSVERMFAILLEHYK---G--KWPFWLSPRQ 506 (601)
Q Consensus 465 ~~g~~~~P~~i~----~ai~GGveRli~iL~E~~~---g--~~p~~lsp~q 506 (601)
+ |.. .++| .++ |++|++++|+|+++ | .||.|++|++
T Consensus 394 ~-g~~---~~vHtlngs~l--av~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 394 D-EKP---RYVHTLNSTAI--ATSRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp T-SCC---EECEEEEEEEE--EHHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred C-CcE---EEEEEEechHh--HHHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 4 432 3445 334 89999999999986 6 8999999998
No 37
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.61 E-value=8.6e-17 Score=164.28 Aligned_cols=89 Identities=15% Similarity=0.017 Sum_probs=77.7
Q ss_pred hcc-CceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC-
Q 007503 313 FAE-LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP- 388 (601)
Q Consensus 313 ~re-lplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~- 388 (601)
+++ +|+|++++|++||+|++|. |||+|+|+|+||.+++ +|+| +|.++.++|+.||++ ++|+|||++
T Consensus 65 ~~~~~p~R~~y~g~vfR~e~~~~-------Ref~Q~g~ei~g~~~~~~DaE---vi~l~~~~l~~lgl~~~~i~l~~~~~ 134 (275)
T 1usy_A 65 YSPDSQIKVWYADFVYRYSGSDL-------VAEYQLGLEKVPRNSLDDSLE---VLEIIVESASEFFEGPVIVEIGHTGV 134 (275)
T ss_dssp CTTCCCEEEECCEEEEEEETTEE-------EEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHCCSCEEEEEEETTH
T ss_pred cCCCCceEEEEeceEEecCCCCC-------CeeeEeCEEEecCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCCHHH
Confidence 557 8999999999999999875 9999999999999999 9999 899999999999997 999999997
Q ss_pred -CccCCChhhHHHHHHHHHHHHHHcC
Q 007503 389 -EKYLGDLATWEKAEAALTEALNEFG 413 (601)
Q Consensus 389 -~~~lG~~~~~~~~~~~L~~~L~~~~ 413 (601)
+..++. .|+.++..|.++|++.+
T Consensus 135 ~~~~~~~--~~~~~~~~l~~~l~~~~ 158 (275)
T 1usy_A 135 YEDLLKE--IPKDLHEKVLNLIDTKN 158 (275)
T ss_dssp HHHHHTT--SCGGGHHHHHHHHHTTC
T ss_pred HHHHHHh--CCHHHHHHHHHHHHccC
Confidence 445554 67777778888877654
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.57 E-value=1.5e-15 Score=161.30 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=58.8
Q ss_pred ccCceeeeeeccccccccCCCCC--CceeeeeeeecCeEEEecC-ch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 314 AELPLRLADFGVLHRNEASGALT--GLTRVRRFQQDDAHIFCRE-SQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~--gliR~ReF~Q~d~eifg~~-~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
+++|+|++++|.+||+|++|.+. +.+|.|||+|+|+|+||.+ ++ +|+| +|.++.++|+.||++ |+++|||+.
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaE---vi~l~~~~l~~lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMD---VLRLLHEASAAAGVRHHRIVVSHAR 190 (373)
T ss_dssp TCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHH---HHHHHHHHHHHHTCCSCEEEEEETT
T ss_pred CCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHH---HHHHHHHHHHHcCCCceEEEecCHH
Confidence 57899999999999999995444 4589999999999999999 66 8999 899999999999997 999999986
No 39
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.52 E-value=5.1e-15 Score=155.77 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred hccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEEccCC
Q 007503 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~r~ 388 (601)
++++|+|++++|.+||+|+++. +|.|||+|+|+|+||.+++ +|+| +|.++.++|+.||++ |++.|||+.
T Consensus 113 ~~~~P~rl~y~g~vfR~e~p~~----gR~REF~Q~g~ei~g~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~l~~~g 183 (344)
T 1z7m_A 113 KDSTSARYSYFGKIFRKEKRHK----GRSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLNKTVFEIGSAK 183 (344)
T ss_dssp CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHH---HHHHHHHHHHHHTCSSEEEEEEEHH
T ss_pred CCCCCeEEEEECcEEccCCCCC----CCcceeEEEEEEEEcCCCcHHHHH---HHHHHHHHHHHCCCCcEEEEECCHH
Confidence 5678999999999999999887 8999999999999999998 9999 899999999999998 999999874
No 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.50 E-value=3.1e-15 Score=161.09 Aligned_cols=158 Identities=25% Similarity=0.418 Sum_probs=112.9
Q ss_pred hhccCceeeeeeccccccccCCC---CCCceeeeeeeecCeEEEecC--chhHHHHHHHHHHHHHHHHHhCcEEE-EEEc
Q 007503 312 AFAELPLRLADFGVLHRNEASGA---LTGLTRVRRFQQDDAHIFCRE--SQIKDEVRGVLEFIDYAYRIFGFTYE-LKLS 385 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~g~---l~gliR~ReF~Q~d~eifg~~--~~~d~Ei~~~i~~~~~~l~~lG~~~~-l~ls 385 (601)
+|+++|++++++|.+||+|.++. ..||+|+|||+|.|+++||.+ +++++|+..++.++.++|+.|||+|+ +.+.
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~ 319 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVA 319 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 68899999999999999998543 589999999999999999999 67999888899999999999999976 4553
Q ss_pred cCCCccCCChhhHHHHHHHHHHHHHHcCCCcc-ccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeec
Q 007503 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAE 464 (601)
Q Consensus 386 ~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~-~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~ 464 (601)
++ .+|..+.. ..+.+ ..|+.+. ..+.++|.+. .||+ +.++++.|.+.
T Consensus 320 t~---dlg~~a~~--------------~~DiE~w~p~~~~-------------~~ei~s~s~~-~Dfq-arr~~i~y~~~ 367 (421)
T 1ses_A 320 TG---DMGPGKWR--------------QVDIEVYLPSEGR-------------YRETHSCSAL-LDWQ-ARRANLRYRDP 367 (421)
T ss_dssp HH---HHCTTCSE--------------EEEEEEEETTTTE-------------EEEEEEEEEE-ETHH-HHHHTCEEECT
T ss_pred Cc---cCCchhhh--------------cccHhheechhcc-------------chheeecccc-chhh-hhhhcCEeECC
Confidence 32 12221110 00000 0111111 1233555554 6776 67899999876
Q ss_pred CCCCcccceEEeccccc---cHHHHHHHHHHhcC---C--CCCCCCCCce
Q 007503 465 DEAKTERPVMIHRAILG---SVERMFAILLEHYK---G--KWPFWLSPRQ 506 (601)
Q Consensus 465 ~~g~~~~P~~i~~ai~G---GveRli~iL~E~~~---g--~~p~~lsp~q 506 (601)
+ | .|.++| ++.| |++|++++|+|++. | .||.+++|+.
T Consensus 368 ~-~---~~~~vh-tlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 368 E-G---RVRYAY-TLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp T-S---CEEECE-EEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred C-C---CEEEEE-ecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 4 3 455566 5555 59999999999973 3 6898888864
No 41
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.46 E-value=1.1e-14 Score=159.03 Aligned_cols=161 Identities=22% Similarity=0.300 Sum_probs=113.1
Q ss_pred hhccCceeeeeeccccccccC--CCCCCceeeeeeeecCeEEEecCc--hhHHHHHHHHHHHHHHHHHhCcEEEE-EEcc
Q 007503 312 AFAELPLRLADFGVLHRNEAS--GALTGLTRVRRFQQDDAHIFCRES--QIKDEVRGVLEFIDYAYRIFGFTYEL-KLST 386 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~--g~l~gliR~ReF~Q~d~eifg~~~--~~d~Ei~~~i~~~~~~l~~lG~~~~l-~ls~ 386 (601)
+|++||++++++|.+||+|.+ ....||+|+|||.|.|+|+||.++ ++++|+..++.++.++|+.|||+|++ .+++
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~t 376 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPT 376 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 789999999999999999988 137899999999999999999995 69999999999999999999999775 5544
Q ss_pred CCCc----cCCChhhHHHHHHHHHHHHHHcCCCccccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEe
Q 007503 387 RPEK----YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYS 462 (601)
Q Consensus 387 r~~~----~lG~~~~~~~~~~~L~~~L~~~~~~~~~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~ 462 (601)
+..+ ..++.+.| .|+.+.+ ++...|. ...||+ +.+|++.|.
T Consensus 377 gdlg~~a~~~~DiE~w--------------------~p~~~~~-------------~Ei~s~s-n~~Dfq-arR~~iry~ 421 (501)
T 1wle_A 377 QELGLPAYRKFDIEAW--------------------MPGRGRF-------------GEVTSAS-NCTDFQ-SRRLHIMFQ 421 (501)
T ss_dssp GGSTTTCSEEEEEEEE--------------------ETTTTEE-------------EEEEEEE-ECTTHH-HHHHTCEEE
T ss_pred cccCCchhheecHhhc--------------------ccccccc-------------eeEEecc-ccccch-hhhcCcEEE
Confidence 4211 01111222 1221111 1112222 245665 678999999
Q ss_pred ecCCCCcccceE-EeccccccHHHHHHHHHHhcC---C--CCCCCCCCce-EEEE
Q 007503 463 AEDEAKTERPVM-IHRAILGSVERMFAILLEHYK---G--KWPFWLSPRQ-AIVC 510 (601)
Q Consensus 463 t~~~g~~~~P~~-i~~ai~GGveRli~iL~E~~~---g--~~p~~lsp~q-v~Vi 510 (601)
+.+ |....+.+ -|.++ +++|++++|+|++. | .||.|++|+. .-+|
T Consensus 422 ~~~-gk~~~vHtlngSgl--av~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 422 TEA-GELQFAHTVNATGC--AVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp CSS-SCEEECEEEEEEEE--EHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred CCC-CCEEEEEEECCccc--hHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 765 43332221 12334 79999999999984 5 7999999986 3344
No 42
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.22 E-value=3.4e-12 Score=139.27 Aligned_cols=170 Identities=19% Similarity=0.305 Sum_probs=110.2
Q ss_pred hhccCceeeeeeccccccccC---CCCCCceeeeeeeecCeEEEecCch--hHHHHHHHHHHHHHHHHHhCcEEEEE-Ec
Q 007503 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELK-LS 385 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~---g~l~gliR~ReF~Q~d~eifg~~~~--~d~Ei~~~i~~~~~~l~~lG~~~~l~-ls 385 (601)
+|++||++++++|.+||+|.+ +...||+|+|||+|.|+++||.+++ +++|+..++.++.++|+.|||+|++. +.
T Consensus 286 s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~ 365 (522)
T 3vbb_A 286 RPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365 (522)
T ss_dssp CTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC
Confidence 789999999999999999997 3679999999999999999999987 99999999999999999999997654 42
Q ss_pred cCCCccCCChhhHHHHHHHHHHHHHHcCCCcc-ccCCCCcccccchhhhHHHHHhhhhhhcceeeccCCCcccceeEeec
Q 007503 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAE 464 (601)
Q Consensus 386 ~r~~~~lG~~~~~~~~~~~L~~~L~~~~~~~~-~~~g~~af~gpki~~~~~d~l~~~~~~~ti~ld~~l~~~~~L~Y~t~ 464 (601)
+. -+|..... ..+.+ ..|+.+.+ ++...|. ..-||+. .++++.|.+.
T Consensus 366 tg---dlg~~ask--------------tyDiE~w~P~~~~y-------------~EIsScS-nc~DyqA-rr~~iry~~~ 413 (522)
T 3vbb_A 366 SG---SLNHAASK--------------KLDLEAWFPGSGAF-------------RELVSCS-NCTDYQA-RRLRIRYGQT 413 (522)
T ss_dssp GG---GCCTTCSE--------------EEEEEEEETTTTEE-------------EEEEEEE-ECTTHHH-HHHTCEESCC
T ss_pred Cc---cCCCchhh--------------eeceeEecCCCCce-------------eEEEEec-CCCCCcc-ceeeeEEccc
Confidence 22 12211100 00000 01211110 0000010 0113332 3678888753
Q ss_pred C--CCCcccce-EEeccccccHHHHHHHHHHhcC----CCCCCCCCCceE----EEEecCCC
Q 007503 465 D--EAKTERPV-MIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQA----IVCPVSEK 515 (601)
Q Consensus 465 ~--~g~~~~P~-~i~~ai~GGveRli~iL~E~~~----g~~p~~lsp~qv----~Vip~~~~ 515 (601)
. .|....+. +.|.++ ++.|++.++.|+|. ..+|..+.|+.. .|+|+...
T Consensus 414 ~~~~~k~~~vhtlNgs~l--av~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 414 KKMMDKVEFVHMLNATMC--ATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKP 473 (522)
T ss_dssp ---CCCCCBCEEEEEEEE--EHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCSC
T ss_pred cccCCCeeeceEEeccch--HHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCCC
Confidence 1 13322222 234567 89999988889873 257777778766 68888753
No 43
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.19 E-value=1.1e-11 Score=134.46 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=67.6
Q ss_pred hhccCceeeeeeccccccccC--C-CCCCceeeeeeeecCeEEEecCch--hHHHHHHHHHHHHHHHHHhCcEEEEEE
Q 007503 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELKL 384 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~--g-~l~gliR~ReF~Q~d~eifg~~~~--~d~Ei~~~i~~~~~~l~~lG~~~~l~l 384 (601)
+|++||++++++|.+||+|.. | ...||+|+|||+|.|+++||.+++ +++|+..++.++.++|+.|||+|++..
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~ 361 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVN 361 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 789999999999999999984 3 579999999999999999999998 999999999999999999999977643
No 44
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.19 E-value=5.4e-12 Score=139.28 Aligned_cols=73 Identities=27% Similarity=0.491 Sum_probs=67.6
Q ss_pred hhccCceeeeeeccccccccC--C-CCCCceeeeeeeecCeEEEecCc--hhHHHHHHHHHHHHHHHHHhCcEEEEEE
Q 007503 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRES--QIKDEVRGVLEFIDYAYRIFGFTYELKL 384 (601)
Q Consensus 312 s~relplr~~~vg~l~R~e~~--g-~l~gliR~ReF~Q~d~eifg~~~--~~d~Ei~~~i~~~~~~l~~lG~~~~l~l 384 (601)
+|+++|++++++|.+||+|.. | ...||+|+|||+|.|+++||.++ ++++|+..++.++.++|+.|||+|++..
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~ 426 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVE 426 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 789999999999999999984 4 57999999999999999999999 7999999999999999999999977644
No 45
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.18 E-value=3.2e-12 Score=140.24 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=65.4
Q ss_pred hhccCceeeee-eccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHH-HHHHHHHHHhCcEEEEEE
Q 007503 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVL-EFIDYAYRIFGFTYELKL 384 (601)
Q Consensus 312 s~relplr~~~-vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i-~~~~~~l~~lG~~~~l~l 384 (601)
+|+++|+++++ +|.+||+| +|...|++|+|||+|.|+|+||+++++++|+..++ ..+..+|+.|||+ .+.+
T Consensus 339 s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~~ 411 (522)
T 2cja_A 339 PNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WRKA 411 (522)
T ss_dssp CGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEEE
T ss_pred ccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EEee
Confidence 67899999999 99999999 88889999999999999999999988888888899 9999999999999 5555
No 46
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.16 E-value=8.8e-12 Score=135.06 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=66.3
Q ss_pred hccCceeeeeeccccccccCC---CCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEE
Q 007503 313 FAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKL 384 (601)
Q Consensus 313 ~relplr~~~vg~l~R~e~~g---~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~l 384 (601)
|++||+++++++.+||+|.++ ...||+|+|||+|.|+|+||+++++++|+..++.++.++|+.|||+|++..
T Consensus 264 y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~ 338 (485)
T 3qne_A 264 AEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVG 338 (485)
T ss_dssp HHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999987 679999999999999999999999999999999999999999999977544
No 47
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.10 E-value=1.7e-10 Score=93.32 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=61.3
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChh
Q 007503 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDE 149 (601)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~e 149 (601)
.|+|++|||+.++++. ++|+.|+|+.++..++..+++|+|||++|||+++|+.||.|+++++++.+
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 5899999999999888 99999999999888888999999999999999999999999999998753
No 48
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.90 E-value=2.5e-09 Score=87.53 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCChh
Q 007503 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDE 149 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~e 149 (601)
+.|.|+.|+|..+++++ |+|+.|+|..|+...+..+++|+|||++++|++||..++.|++++++.-+
T Consensus 6 ~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC---
T ss_pred ceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCccc
Confidence 56999999999999999 99999999999999999999999999999999999999999999998754
No 49
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=98.53 E-value=8e-08 Score=99.30 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=64.6
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEEEEccC
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTR 387 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l~ls~r 387 (601)
+.|+++..+|.|||+|.+ .||+|+|||+|.|+++||+++++.+|+..++..+.++|+.|||+|++.+.+.
T Consensus 166 ~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~LgLpyrv~~~~D 235 (346)
T 3mf2_A 166 KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASD 235 (346)
T ss_dssp TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEccC
Confidence 448999999999999995 5999999999999999999999999999999999999999999999888643
No 50
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=97.91 E-value=1.1e-05 Score=82.40 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=56.8
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCch-hHHHHHHHHHHHHHHHHHhCcE-EEEEE
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~-~d~Ei~~~i~~~~~~l~~lG~~-~~l~l 384 (601)
+++|++++++|.+||+|.++. +|+|||+|.+++++|.+++ ..+| ++.++..+++.||++ |.+.-
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~~----~r~~EF~qle~~i~g~~~~~~f~e---lkg~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQGA----QHLNEFTMLNLTELGTPLEERHQR---LEDMARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSSS----CCCSEEEEEEEEEETCCGGGHHHH---HHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCEEEEEEeeEEecCCCCC----CcCccEEEEEEEEEcCCchhhHHH---HHHHHHHHHHHcCCCCcEEec
Confidence 578999999999999999887 8999999999999999877 6777 789999999999995 76654
No 51
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=96.77 E-value=0.0014 Score=66.78 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=51.2
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcEEEE
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL 382 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~~~l 382 (601)
...|+|++++|.+||+|..+. .+.+||+|.|++++|.+. ...| +..++..+++.+|++|.+
T Consensus 152 ~~~p~rlfeiG~vFR~E~~~~----~~~~Ef~ql~~~~~g~~~-~f~e---lkg~le~ll~~lGl~~~~ 212 (290)
T 3qtc_A 152 LPDPIKIFEIGPCYRKESDGK----EHLEEFTMLVFWQMGSGC-TREN---LESIITDFLNHLGIDFKI 212 (290)
T ss_dssp SCSSEEEEEEEEEECCCSCSS----SCCSEEEEEEEEEESTTC-CHHH---HHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEEcCEEecCCCCC----cCcchheEEEEEEEcCCh-HHHH---HHHHHHHHHHHcCCCcEE
Confidence 467899999999999997665 789999999999999764 3556 678888999999997554
No 52
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=94.95 E-value=0.018 Score=58.74 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=38.3
Q ss_pred ceeeeeeccccccccCCCCCCceeee-eeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhC
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG 377 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~R-eF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG 377 (601)
+.|++++|++||+|.++.-+ .|-+ ||+|.|+|+.+.+ .+| +++++.++++.++
T Consensus 88 ~~rvf~ig~~FR~E~pq~~~--~RH~~EFtqle~e~~~~~---~~~---l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESRQKDD--GRHAYEFTQLDFEVERAK---MED---IMRLIERLVYGLF 141 (294)
T ss_dssp CCEEEEEEEEECCCCGGGCS--SSCCSEEEEEEEEEETCC---HHH---HHHHHHHHHHHHH
T ss_pred ccceEEEEccEeCCCCCCCC--CccccceeEEEEEecCCC---HHH---HHHHHHHHHHHHH
Confidence 67999999999999944200 3777 9999999999986 344 4555555554443
No 53
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=94.87 E-value=0.039 Score=45.64 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=45.9
Q ss_pred CCeEEEeCCCcEEEeecCC-CCHHHHHHhhhcccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 007503 82 DPIKITLPDGSVKEGKRWE-TSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (601)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~-tt~~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~le~l~~ 145 (601)
..++|++ +|+.++... + +|+.|+.+.+.. ....+++.|||++++- +++|..+.+|+++.+
T Consensus 19 ~~M~I~v-NGe~~el~~-~~~Tv~dLL~~L~~--~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 19 GRHMLQL-NGKDVKWKK-DTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp ---CEEE-TTEEECCSS-SCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred cceEEEE-CCEEEECCC-CCCcHHHHHHHhCC--CCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 4567777 788888776 5 999999999853 3455678899999976 578999899999875
No 54
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.05 E-value=0.042 Score=44.00 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=46.5
Q ss_pred CeEEEeCCCcE---EEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 007503 83 PIKITLPDGSV---KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (601)
Q Consensus 83 ~I~v~l~dg~~---~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 147 (601)
+|+|++- |.. ++.+. ++|+.|+.+.+.-. ..-+++.|||+..+.+.+++ +.+|+++.|=+
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~-g~Tv~dLL~~Lgl~--~~~VvV~vNG~~v~~d~~l~-GD~VeIv~~V~ 64 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDD-DGTYADLVRAVDLS--PHEVTVLVDGRPVPEDQSVE-VDRVKVLRLIK 64 (74)
T ss_dssp EEEEECS-SSSEEEEECST-TCSHHHHHHTTCCC--SSCCCEECCCCCCCTTSSSC-CCCEEECSSCS
T ss_pred EEEEEEe-CccceeEEcCC-CCcHHHHHHHcCCC--cceEEEEECCEECCHHHCCC-CCEEEEEEeec
Confidence 4788885 443 56666 89999999998643 33457899999999999997 55999988754
No 55
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=93.88 E-value=0.091 Score=40.80 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=45.5
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 007503 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (601)
Q Consensus 85 ~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~le~l~~ 145 (601)
+|++ +|+.++... ++|+.++.+.+.. ....++..|||++.+- +++|..+.+|+++.+
T Consensus 2 ~i~v-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 2 QILF-NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CEEE-SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 4566 678887776 8999999999863 3455678899999875 789999889999875
No 56
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.65 E-value=0.11 Score=40.89 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=45.5
Q ss_pred eEEEeCCCcE----EEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 84 IKITLPDGSV----KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~----~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|++ +|+. ++... ++|+.++.+.+... ...+++.|||++.+.+.+|..+.+|+++.+
T Consensus 5 m~i~v-Ng~~~~~~~~~~~-~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 5 MKFTV-ITDDGKKILESGA-PRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEE-EETTEEEEEEESS-CCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred EEEEE-eCccCceeEECCC-CCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 67777 4444 66666 79999999988533 344677899999999999999999999875
No 57
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=93.46 E-value=0.062 Score=57.72 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=31.9
Q ss_pred ceeeeeeccccccccCCCCCCceeee-eeeecCeEEEecC
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRE 355 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~R-eF~Q~d~eifg~~ 355 (601)
+-|++++|.+||+|.+.. .|-+ ||+|.|+|..+.+
T Consensus 200 ~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 200 LEKVWSLTPSFRAEKSRT----RRHLTEFWHLELEAAWMD 235 (434)
T ss_dssp HSEEEEEEEEECCCCCCC----SSCCSEEEEEEEEEETCC
T ss_pred ccceEEEecceecCCCCC----cccccEEEEeeEEEcCCC
Confidence 679999999999998876 6888 9999999999986
No 58
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=93.39 E-value=0.056 Score=57.85 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=21.5
Q ss_pred ceeeeeeccccccccCCCCCCceeee-eeeecCeEEEecCc
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRES 356 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~R-eF~Q~d~eifg~~~ 356 (601)
.-|++++|++||+|.+.. .|-+ ||+|.|+|..+.++
T Consensus 190 ~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~d 226 (422)
T 1n9w_A 190 FERVYEVAPVWRMEEHHT----SRHLNEYLSLDVEMGFIAD 226 (422)
T ss_dssp HSEEEEEEEC-----------------CCEEEEEEEESCSS
T ss_pred CCceeEEeCceECCCCCC----CcccceeEEeeeeeeCCCC
Confidence 369999999999999876 7888 99999999999844
No 59
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.09 E-value=0.23 Score=38.22 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=43.9
Q ss_pred EEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeecc----ccccCCCCeEEeeC
Q 007503 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (601)
Q Consensus 86 v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~le~l~~ 145 (601)
|++ +|+.++. . ++|+.++.+.+.. ....++..|||++.+.. ++|..+.+|+++.+
T Consensus 2 i~v-Ng~~~~~-~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 2 VWL-NGEPRPL-E-GKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEE-TTEEECC-T-TCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 455 7788877 5 7999999999864 34456778999999865 89999999999875
No 60
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=93.06 E-value=0.11 Score=42.07 Aligned_cols=59 Identities=10% Similarity=0.234 Sum_probs=45.8
Q ss_pred eEEEeCCCcEEEee--cCCCCHHHHHHhhhcccccceEEEEEcCEEeecc----ccccCCCCeEEeeC
Q 007503 84 IKITLPDGSVKEGK--RWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (601)
Q Consensus 84 I~v~l~dg~~~~~~--~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~le~l~~ 145 (601)
++|++ +|+.++.. . ++|+.++...+.-.. ..-++..|||++++-. ++|..+.+|+++.+
T Consensus 1 M~I~v-NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 1 MNLTV-NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp CEEEE-TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred CEEEE-CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 36777 67888776 5 799999999876320 3456788999998765 78999999999886
No 61
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=92.94 E-value=0.11 Score=41.46 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=44.7
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeec----cccccCCCCeEEeeCC
Q 007503 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTFD 146 (601)
Q Consensus 85 ~v~l~dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~le~l~~~ 146 (601)
+|++ +|+.++. . ++|+.++...+.- ...-+++.|||++++- +++|..+.+|+++.+=
T Consensus 2 ~I~v-NG~~~e~-~-~~Tl~~LL~~l~~--~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 2 LVTI-NGEQREV-Q-SASVAALMTELDC--TGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp CEEE-TTEEECC-C-CSBHHHHHHHTTC--CSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred EEEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 4666 6777777 5 7999999998753 3445678899999876 4789998999999873
No 62
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=92.92 E-value=0.084 Score=56.58 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=32.2
Q ss_pred ceeeeeeccccccccCCCCCCceeee-eeeecCeEEEecCc
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRES 356 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~R-eF~Q~d~eifg~~~ 356 (601)
+-|++++|++||+|.+.. .|-+ ||+|.|+|..+.+.
T Consensus 199 ~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~~ 235 (429)
T 1wyd_A 199 VERVFEVAPAWRAEESDT----PFHLAEFISMDVEMAFADY 235 (429)
T ss_dssp HSEEEEEEEEECCCCCCS----SSCCSEEEEEEEEEETCCH
T ss_pred cCceEEEcccccccCCcc----ccccceeeEeeeeecCCCH
Confidence 569999999999999876 6888 99999999999863
No 63
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=92.60 E-value=0.075 Score=57.89 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.0
Q ss_pred ceeeeeeccccccccCCCCCCceeee-eeeecCeEE-EecC
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHI-FCRE 355 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~R-eF~Q~d~ei-fg~~ 355 (601)
+-|++++|.+||+|.++. .|-+ ||+|.|+|+ |+.+
T Consensus 244 ~~rvy~ig~~FR~E~~~~----~Rh~pEFt~le~e~af~~~ 280 (487)
T 1eov_A 244 FERVYEIGPVFRAENSNT----HRHMTEFTGLDMEMAFEEH 280 (487)
T ss_dssp CCEEEEEEEEECCCCCCC----TTCCSEEEEEEEEEECSSC
T ss_pred CCceEEEeccEecCCCCC----CccchhhhhhhhhhhhhcC
Confidence 469999999999999976 7888 999999998 8864
No 64
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=91.14 E-value=0.17 Score=55.07 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=32.4
Q ss_pred ceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 317 plr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
.-|++++|.+||+|.++. .+..||+|.|+|..+.+-
T Consensus 242 ~~rVyeig~~FR~E~~~~----rH~pEFT~lE~e~af~d~ 277 (493)
T 3a74_A 242 LEKVYEIGRVFRNEGIST----RHNPEFTMLELYEAYADF 277 (493)
T ss_dssp CCEEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCCH
T ss_pred cCceEEECccccCCCCCc----ccCCceeEEEEEecCCCH
Confidence 358999999999999987 899999999999998763
No 65
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=89.50 E-value=0.31 Score=53.21 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=30.9
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
=|+|++|.+||+|.+.. .+..||+|.|+|....+-
T Consensus 252 ~rVyeIg~~FR~E~~~~----rH~pEFt~lE~e~af~d~ 286 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADY 286 (504)
T ss_dssp CEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCH
T ss_pred CcEEEEcccccCCCCCc----cccCceeeeeeeecCCCH
Confidence 48999999999999986 899999999999998763
No 66
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=88.68 E-value=0.36 Score=50.14 Aligned_cols=35 Identities=14% Similarity=-0.050 Sum_probs=31.4
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
=|++++|.+||+|.+.. -+..||+|.|+|.-+.+-
T Consensus 110 ~rvyqIg~~FR~E~~~~----rH~pEFt~lE~e~af~d~ 144 (345)
T 3a5y_A 110 GPVFQLCRSFRNEEMGR----YHNPEFTMLEWYRPHYDM 144 (345)
T ss_dssp CSEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCCH
T ss_pred CcEEEEEcceeCCCCcc----cccchhheeeeeeeCCCH
Confidence 38999999999999977 799999999999988753
No 67
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=85.98 E-value=0.83 Score=49.67 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=49.1
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEcc
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLST 386 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls~ 386 (601)
..|++++++|.+||++.... .++.+|+|.+.-+.+.+ ....+ +..++..+++.||+. ++++-+.
T Consensus 345 ~~PiriFeiGrVFR~d~~Da----tHlpeFhQlegl~~~~~-v~f~d---LKg~Le~~l~~lG~~~~rfrps~ 409 (508)
T 3l4g_A 345 FTPVKYFSIDRVFRNETLDA----THLAEFHQIEGVVADHG-LTLGH---LMGVLREFFTKLGITQLRFKPAY 409 (508)
T ss_dssp CCCEEEEEEEEEECCSCCCS----SSCSEEEEEEEEEEEES-CCHHH---HHHHHHHHHHTTTCCCCEEEECC
T ss_pred CCCceEEEEccEEecCCCCC----CcCCeEEEEEEEEECCC-CCHHH---HHHHHHHHHHHcCCcceEeeccC
Confidence 47899999999999998766 78899999998776532 24555 566777789999985 6655543
No 68
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=85.32 E-value=0.56 Score=37.48 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=41.3
Q ss_pred CCcEEEeecCCCCHHHHHHhhhcccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 90 DGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 90 dg~~~~~~~~~tt~~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++..++... ++|+.|+.+.+... ...+++.|||++.+.+.+|..+.+|+++..
T Consensus 21 n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSCC
T ss_pred CCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEcc
Confidence 455555555 78999999988632 344577899999999999999999998764
No 69
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=83.90 E-value=1.3 Score=48.42 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=49.2
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
+..|++++++|.+||.+.. +. .+.+||+|.++-+.|.+.. -.+ +..++..+++.||+. +++.-+
T Consensus 202 ~~~pvrLFEIG~VFr~d~~~d~----th~~Ef~qLagli~G~~vd-f~d---LKgilE~LL~~LGi~~~r~~~~ 267 (534)
T 2du3_A 202 LPLPIKLFSIDRCFRREQGEDA----TRLYTYFSASCVLVDEELS-VDD---GKAVAEALLRQFGFENFRFRKD 267 (534)
T ss_dssp SCSSEEEEEEEEEECCCTTCSS----SCCSEEEEEEEEEECSSCC-HHH---HHHHHHHHHGGGTCCEEEEEEC
T ss_pred CCCCeeEEEEeeEEecCccccc----cccceeeEEEEEEECCCCC-HHH---HHHHHHHHHHHcCCCeEEEEEC
Confidence 4678999999999998665 54 5679999999999997433 234 566778889999985 666544
No 70
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=83.49 E-value=3 Score=34.61 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=44.4
Q ss_pred EEeecCCCCHHHHHHhhhcccccceEEEEE-------cCEEeeccccccCCCCeEEeeCC
Q 007503 94 KEGKRWETSPMDIAQGISKSLAANALISMV-------NGVLWDMTRPLEADCDLKLFTFD 146 (601)
Q Consensus 94 ~~~~~~~tt~~dia~~i~~~~~~~~v~a~V-------ng~l~dL~~~l~~d~~le~l~~~ 146 (601)
+.....++|+.|+|..|.....+....|.| |++-+.+++.|++...|++++-.
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCC
Confidence 555234999999999999999998888776 89999999999987778888754
No 71
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=80.42 E-value=1.5 Score=36.53 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=37.1
Q ss_pred CCCHHHHHHhhhcccc-------------cceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 100 ETSPMDIAQGISKSLA-------------ANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~-------------~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|+.++...+...++ .+.++..|||+.++++++|..+.+|.++..
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEESC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEECC
Confidence 6899999888764321 245778899999999999999999998753
No 72
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=78.50 E-value=1.7 Score=46.48 Aligned_cols=35 Identities=14% Similarity=-0.037 Sum_probs=29.4
Q ss_pred eeeeeeccccccccCCCCCCceeee-eeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~R-eF~Q~d~eifg~~~ 356 (601)
=|++++|.+||+|.+.. -|-. ||+|.|+|.-+.+-
T Consensus 198 ~rvfeIg~~FR~E~~~t----~RH~~EFT~lE~e~af~d~ 233 (435)
T 2xgt_A 198 GDVFCIAQSYRAEKSRT----RRHLAEYAHVEAECPFITL 233 (435)
T ss_dssp CSEEEEEEEECCCSSCC----TTCCSEEEEEEEEEESCCH
T ss_pred CceEEEecceecCCCCc----cccccceeEEEEEEecCCH
Confidence 38999999999998754 4666 99999999988763
No 73
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=76.53 E-value=3 Score=44.61 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=29.5
Q ss_pred eeeeeeccccccccCCCCCCceee-eeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRV-RRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~-ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. .|- -||+|.|+|.-..+
T Consensus 204 ~rvf~i~~~FR~E~~~t----~RH~pEFt~le~e~a~~~ 238 (438)
T 3nem_A 204 DRVYEIAPIFRAEEHNT----TRHLNEAWSIDSEMAFIE 238 (438)
T ss_dssp CEEEEEEEEECCCSSCC----TTCCSEEEEEEEEEESCS
T ss_pred CceEEEcceEECCCCCC----cccccceeeeeeeeccCc
Confidence 48999999999998874 454 59999999998887
No 74
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=75.00 E-value=2.3 Score=47.41 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=30.4
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=++|++|.+||+|.+.. -|.-||+|.|+|.-..+
T Consensus 217 ~rvfqi~~~FR~E~~~t----~r~pEFt~lE~e~af~d 250 (617)
T 4ah6_A 217 DRYFQVARCYRDEGSRP----DRQPEFTQIDIEMSFVD 250 (617)
T ss_dssp SEEEEEEEEECCCSSCS----SSCSEEEEEEEEEESCC
T ss_pred CcEEEEEhheecccCCC----CcCcceecceeeecCCC
Confidence 38999999999999887 78899999999997765
No 75
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=73.86 E-value=9.5 Score=30.01 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCCHHHHHHhhhccc-------ccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 007503 100 ETSPMDIAQGISKSL-------AANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 100 ~tt~~dia~~i~~~~-------~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|+.++...+...+ ...-++..|||+..+++.+|..+.+|.++..
T Consensus 25 ~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeCC
Confidence 679999988876432 1223567899999999999999999998753
No 76
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=71.11 E-value=3.8 Score=45.41 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=30.6
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
=|+|++|.+||+|.... -|-=||+|.|+|.-..+-
T Consensus 213 ~rvfqI~~~FR~E~~~~----~r~pEFT~lE~e~af~d~ 247 (580)
T 1l0w_A 213 DRYFQIARCFRDEDLRA----DRQPDFTQLDLEMSFVEV 247 (580)
T ss_dssp SEEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCCH
T ss_pred CCeEEEeceeeCCCCCC----CcCCCccceeeeecCCCH
Confidence 38999999999999987 676699999999988763
No 77
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=70.70 E-value=3.8 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=30.6
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~ 356 (601)
=|+|++|.+||+|.+.. -|-=||+|.|+|.-..+-
T Consensus 207 ~rvfqI~~~FR~E~~~t----~r~pEFT~lE~e~af~d~ 241 (585)
T 1c0a_A 207 DRYYQIVKCFRDEDLRA----DRQPEFTQIDVETSFMTA 241 (585)
T ss_dssp CEEEEEEEEECCCCCBT----TBCSEEEEEEEEEESCCH
T ss_pred CceEEEeceeecCCCCC----CcCcccceeeeeecCCCH
Confidence 38999999999999987 676699999999988763
No 78
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=69.71 E-value=7.5 Score=31.27 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.2
Q ss_pred EEEeecCCCCHHHHHHhhhcccc-------------cceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 007503 93 VKEGKRWETSPMDIAQGISKSLA-------------ANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (601)
Q Consensus 93 ~~~~~~~~tt~~dia~~i~~~~~-------------~~~v~a~Vng~l~d----L~~~l~~d~~le~l~~ 145 (601)
..+... ++|+.++...+...++ .+.+++.|||+.++ ++++|..+.+|.++..
T Consensus 18 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNG-ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESS-CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCC-CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 334443 6899999888765431 14467889999986 7999999889998764
No 79
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=69.26 E-value=5.6 Score=32.15 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCHHHHHHhhhccccc-------------ceEEEEEcCEEeeccccccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSLAA-------------NALISMVNGVLWDMTRPLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~~-------------~~v~a~Vng~l~dL~~~l~~d~~le~l~ 144 (601)
++|+.++...+...++. +.+...|||+.++++++|..+.+|.++.
T Consensus 27 ~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 27 DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 67889988887654321 2267779999999999999998998874
No 80
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=68.77 E-value=4.1 Score=31.92 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhhccccc-ceE--EEEEcCEEeeccccccCCCCeEEeeC
Q 007503 100 ETSPMDIAQGISKSLAA-NAL--ISMVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~~-~~v--~a~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
++|..|+...+...++. .-+ +..|||+..+.+.+|..+.+|+++..
T Consensus 25 ~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 25 ALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp CEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEECS
T ss_pred CCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEECC
Confidence 56888988887654321 223 67799999999999999999998764
No 81
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=68.53 E-value=6.4 Score=32.13 Aligned_cols=45 Identities=4% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhhcccc-------c--------ceEEEEEcCEEee----ccccccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSLA-------A--------NALISMVNGVLWD----MTRPLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~-------~--------~~v~a~Vng~l~d----L~~~l~~d~~le~l~ 144 (601)
++|+.++...+...++ . +.+...|||+.++ ++++|..+.+|.++.
T Consensus 25 ~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 25 GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 7899999888765432 1 1477889999997 799999988998875
No 82
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=67.30 E-value=4.9 Score=43.93 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=30.2
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|+|++|.+||+|.+.. -+.-||+|.|+|.-..+
T Consensus 273 ~rVyeIg~~FR~E~~~~----rH~pEFtmlE~e~af~d 306 (529)
T 4ex5_A 273 ERVFEINRNFRNEGVSP----RHNPEFTMMEFYAAYTD 306 (529)
T ss_dssp SEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCC
T ss_pred CcEEEeehheecCCCCC----CcccHhHhhhhhhhcCC
Confidence 48999999999998876 68999999999997765
No 83
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=66.05 E-value=5.3 Score=43.61 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=30.2
Q ss_pred eeeeeeccccccccCCCCCCceeeeeeeecCeEEEecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~ 355 (601)
=|++++|.+||+|.+.. -..-||+|.|+|.-..+
T Consensus 245 ~rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 245 DRVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYAD 278 (521)
T ss_dssp CEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCC
T ss_pred CceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCC
Confidence 38999999999998876 68899999999998865
No 84
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=64.81 E-value=20 Score=35.49 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHH
Q 007503 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQ 551 (601)
Q Consensus 484 eRli~iL~E~~~g~~p~~lsp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~ 551 (601)
+-|+.+..+. .|.+|.++|-.. ...+....+.++|+++|++|.+... .-..++..|.
T Consensus 105 ~emi~ial~~---------kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID--pd~~qI~aA~ 173 (278)
T 3gk0_A 105 PEMLDIACEI---------RPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID--PDEAQIRAAH 173 (278)
T ss_dssp HHHHHHHHHH---------CCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHH
T ss_pred HHHHHHHHHc---------CCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHH
Confidence 4566665553 577999999752 3567778899999999999998774 2356899999
Q ss_pred hcCCcEEEE
Q 007503 552 LAQYNFILV 560 (601)
Q Consensus 552 ~~g~~~iiv 560 (601)
+.|+++|=+
T Consensus 174 ~~GAd~IEL 182 (278)
T 3gk0_A 174 ETGAPVIEL 182 (278)
T ss_dssp HHTCSEEEE
T ss_pred HhCcCEEEE
Confidence 999998743
No 85
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=62.35 E-value=6.9 Score=41.99 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=28.5
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEEEecCc
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRES 356 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~eifg~~~ 356 (601)
=++|++|.+||+|.+.. -| .-||+|.|+|.-..+-
T Consensus 222 ~rVyeig~~FR~E~~~t----~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 222 GKSFCMLSSYRAEQSRT----VRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp SSEEEEEEEECCCSCCC----SSCCSEEEEEEEEEESCCH
T ss_pred CcEEEEEhheecCCCCC----CcchHHHHHhHHHHhcCCH
Confidence 47999999999998653 24 4599999999988763
No 86
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=61.62 E-value=25 Score=34.16 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHH
Q 007503 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQ 551 (601)
Q Consensus 484 eRli~iL~E~~~g~~p~~lsp~qv~Vip~~~------------~~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~ 551 (601)
+-|+.+..+. .|.+|.++|-.. ...+....+.+.|+++|++|.+... .-..++..|.
T Consensus 77 ~emi~ia~~~---------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID--pd~~qi~aA~ 145 (243)
T 1m5w_A 77 EEMLAIAVET---------KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID--ADEEQIKAAA 145 (243)
T ss_dssp HHHHHHHHHH---------CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHH
T ss_pred HHHHHHHHHc---------CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHH
Confidence 4566665553 577999999742 2567778899999999999999774 2347999999
Q ss_pred hcCCcEEEE
Q 007503 552 LAQYNFILV 560 (601)
Q Consensus 552 ~~g~~~iiv 560 (601)
+.|+++|=+
T Consensus 146 ~~GA~~IEL 154 (243)
T 1m5w_A 146 EVGAPFIEI 154 (243)
T ss_dssp HTTCSEEEE
T ss_pred HhCcCEEEE
Confidence 999998754
No 87
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=58.91 E-value=14 Score=36.19 Aligned_cols=66 Identities=12% Similarity=0.248 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEecCCC----------cHHHHHHHHHHHHHcCCEEEEeCCCCcHHHHHHHHHhc
Q 007503 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK----------SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLA 553 (601)
Q Consensus 484 eRli~iL~E~~~g~~p~~lsp~qv~Vip~~~~----------~~~~A~~i~~~Lr~~Gi~v~~d~~~~~l~kki~~A~~~ 553 (601)
+-|+.+..+. .|.+|.++|-..+ ..+....+.+.|+++|++|.+... .-..++..|.+.
T Consensus 76 ~emi~ial~~---------kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~~ 144 (260)
T 3o6c_A 76 DEILNLALKL---------KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN--PSLEDIEKSKIL 144 (260)
T ss_dssp HHHHHHHHHH---------CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHT
T ss_pred HHHHHHHHHc---------CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHh
Confidence 4566666553 5779999997532 345567788899999999998774 235689999999
Q ss_pred CCcEEEE
Q 007503 554 QYNFILV 560 (601)
Q Consensus 554 g~~~iiv 560 (601)
|+++|=+
T Consensus 145 GAd~IEL 151 (260)
T 3o6c_A 145 KAQFIEL 151 (260)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998744
No 88
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=57.86 E-value=6.5 Score=32.87 Aligned_cols=59 Identities=3% Similarity=-0.117 Sum_probs=40.1
Q ss_pred EEeecCCCCHHHHHHhhhccccc-----ceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHH
Q 007503 94 KEGKRWETSPMDIAQGISKSLAA-----NALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDT 153 (601)
Q Consensus 94 ~~~~~~~tt~~dia~~i~~~~~~-----~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eG~~v 153 (601)
.+... ++|..|+....+-.... ..++.-|||+..+++++|.....||++.+=..|.+.+
T Consensus 30 ~~v~~-g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~~DPk~~ 93 (97)
T 2hj1_A 30 FQVDE-GITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADPKEI 93 (97)
T ss_dssp EEEET-TCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC------
T ss_pred EEcCC-CCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEecccCCHHHH
Confidence 34455 99999999887642221 1366779999999999999999999877655444443
No 89
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=55.09 E-value=22 Score=36.66 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=42.2
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHh-CcE
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~l-G~~ 379 (601)
...|++++++|.+||.+.... ....||+|.+.-+.|.+-. -.+ +...+..+++.+ |.+
T Consensus 190 ~~~piriFEiGrVFR~d~~d~----tH~pEF~qlegl~~g~~v~-f~d---LKg~le~ll~~lfG~~ 248 (350)
T 1b7y_A 190 HTPPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIA-MAH---LKGAIYELAQALFGPD 248 (350)
T ss_dssp CCSSEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEEETTCC-HHH---HHHHHHHHHHHHSCSS
T ss_pred cCCCeeEEEeeeEEECCCCCC----CCCChhHEEEEEEECCCCC-HHH---HHHHHHHHHHhhcCCC
Confidence 367899999999999865333 4568999999999986322 223 455677777776 864
No 90
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=54.04 E-value=16 Score=30.27 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=42.4
Q ss_pred CCeEEEeCC------C-cEEEeecCCCCHHHHHHhhhcccc---cc---------eE-------EEEEcCEEe----ecc
Q 007503 82 DPIKITLPD------G-SVKEGKRWETSPMDIAQGISKSLA---AN---------AL-------ISMVNGVLW----DMT 131 (601)
Q Consensus 82 ~~I~v~l~d------g-~~~~~~~~~tt~~dia~~i~~~~~---~~---------~v-------~a~Vng~l~----dL~ 131 (601)
.+|+|.+.. | ...+.. ++|+.|+...+...++ .. -+ +..|||+.+ +++
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~--~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~ 81 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS--GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLE 81 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE--CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe--CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCC
Confidence 346666643 2 234443 6899999888764421 11 24 778999998 789
Q ss_pred ccccCCCCeEEeeC
Q 007503 132 RPLEADCDLKLFTF 145 (601)
Q Consensus 132 ~~l~~d~~le~l~~ 145 (601)
++|..+.+|.++..
T Consensus 82 ~~L~~gD~V~i~pp 95 (99)
T 2l52_A 82 TLLKDSDEIGILPP 95 (99)
T ss_dssp SCCCTTEEEEEECC
T ss_pred CCCCCCCEEEEECC
Confidence 99999889998753
No 91
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=51.50 E-value=13 Score=40.85 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.3
Q ss_pred eeeeeeccccccccCCCCCCcee-eeeeeecCeEE-EecC
Q 007503 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHI-FCRE 355 (601)
Q Consensus 318 lr~~~vg~l~R~e~~g~l~gliR-~ReF~Q~d~ei-fg~~ 355 (601)
=++|++|.+||+|.+.. -| .-||+|.|+|. |+.+
T Consensus 311 ~rVfeI~~~FR~E~~~t----~RHl~EFtmlE~e~af~~d 346 (548)
T 3i7f_A 311 RKVFEVGPVFRAENSNT----RRHLTEFEGLDIEMEIVEN 346 (548)
T ss_dssp CEEEEEEEECCCSCCCS----SSCCSCEEEEEEEEECSSC
T ss_pred CcEEEEeeeEecCCCCC----CCcchhhhchhhhhhhhcC
Confidence 58999999999998753 23 56999999996 6643
No 92
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=48.37 E-value=17 Score=28.16 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=41.1
Q ss_pred eEEEeCCC---cEEEeecCCCCHHHHHHhhhcccc--c--ceEEEEEcCEE-eeccccccCCCCeEEee
Q 007503 84 IKITLPDG---SVKEGKRWETSPMDIAQGISKSLA--A--NALISMVNGVL-WDMTRPLEADCDLKLFT 144 (601)
Q Consensus 84 I~v~l~dg---~~~~~~~~~tt~~dia~~i~~~~~--~--~~v~a~Vng~l-~dL~~~l~~d~~le~l~ 144 (601)
|+|.+... ..++. . ++|+.++...+..... . ..++.-|||+. .+.+++|..+.+|.++.
T Consensus 3 v~V~~fa~l~~~~~e~-~-~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 3 VEVRFFGPIKEENFFI-K-ANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp EEEEECTTCCCCCEEE-E-CSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred EEEEEEeecceeEEee-C-CCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 55554321 23444 3 7899999988875321 1 45777799998 67999999988999875
No 93
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=43.53 E-value=68 Score=29.03 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 007503 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (601)
Q Consensus 153 vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~ii 213 (601)
.=-||+-|+++.-+++....-+-+||-=- --|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 52 ~~iHTlEHL~A~~lRnh~~~iId~sPMGC-rTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 109 (160)
T 1j6x_A 52 PSLHSLEHLVAEIIRNHANYVVDWSPMGC-QTGFYLTVL--N-HDNYTEILEVLEKTMQDVL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCSCEEEEEECTT-SSEEEEEEE--S-CCCHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHhhCCCCeEEECCcCc-chhcEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 34799999999999998754455665321 158988664 3 355555 566777777775
No 94
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=42.36 E-value=24 Score=38.53 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=44.7
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEE
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELK 383 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ 383 (601)
+..|++++++|.+||.+.. .. ...+||+|.+.-+.|.+- ...+ +...+..+++.||+. ++++
T Consensus 214 ~~~pvrlFEiGrVFr~D~~~d~----th~~ef~qLaglv~G~~v-dF~D---LKG~Le~ll~~LGi~~~rfr 277 (549)
T 2du7_A 214 RKLPLKLFSIDRCFRREQREDR----SHLMSYHSASCVVVGEDV-SVDD---GKVVAEGLLAQFGFTKFKFK 277 (549)
T ss_dssp SCSSEEEEEEEEECCCCSSCSS----SCCSCEEEEEEEEECTTC-CHHH---HHHHHHHHHGGGTCCCCCCE
T ss_pred CCCCeEEEEEeeEEecCCcccC----cCCCcceEEEEEEECCCC-CHHH---HHHHHHHHHHHcCCCeEEEE
Confidence 3678999999999997542 22 356999999999998632 3344 566777788888874 4443
No 95
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=40.40 E-value=48 Score=33.73 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=38.5
Q ss_pred ccCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHh-C--cEEEEEE
Q 007503 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-G--FTYELKL 384 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~l-G--~~~~l~l 384 (601)
...|++++.+|.+||.+ ... ...-+|+|.+.-+.+. +..-.++++++. .+++.| | ++++++-
T Consensus 181 ~~~pirifeiGrVyR~d-~d~----th~p~fhqlegl~v~~-~v~f~dLKg~Le---~~l~~lfg~~~~vr~rp 245 (327)
T 3pco_A 181 QQPPIRIIAPGRVYRND-YDQ----THTPMFHQMEGLIVDT-NISFTNLKGTLH---DFLRNFFEEDLQIRFRP 245 (327)
T ss_dssp CCSSCCBCCEECCBCSC-CBT----TBCSBCCEEEEEEEET-TCCHHHHHHHHH---HHHHHHHCSCSEEEEEE
T ss_pred CCCCeeEEeeccEEecC-CCc----ccCCcccEEEEEEECC-CCCHHHHHHHHH---HHHHHHhCCCceEEEec
Confidence 46789999999999987 232 5667899986555542 224455444444 444444 4 4555443
No 96
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=38.01 E-value=91 Score=28.39 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCccccCCcEEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 007503 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (601)
Q Consensus 153 vy~hS~~hlL~~A~~~~fg~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~ii 213 (601)
.=-||+-|+++.-+++....-+-+||-=- --|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 54 ~~iHTlEHL~A~~lRnh~~~iId~sPMGC-rTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 111 (166)
T 1vje_A 54 AAIHTLEHLLAGYMRDHLEGVVDVSPMGA-RTGMYMAVI--G-EPDEQGVMKAFEAALKDTA 111 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEECTT-SSEEEEEEE--S-SCCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCCCeEEECCccc-ccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 34799999999999998764455665321 149987664 2 355555 556777777775
No 97
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=36.07 E-value=15 Score=38.52 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=43.7
Q ss_pred cEEEeecCCCCHHHHHHhhhcccccceEEE--EEcCEEeeccccccCCCCeEEeeC
Q 007503 92 SVKEGKRWETSPMDIAQGISKSLAANALIS--MVNGVLWDMTRPLEADCDLKLFTF 145 (601)
Q Consensus 92 ~~~~~~~~~tt~~dia~~i~~~~~~~~v~a--~Vng~l~dL~~~l~~d~~le~l~~ 145 (601)
.....++ |+|+.|+|..|.....+..+.| .+|+....++++|+....|++++-
T Consensus 341 ~~~~l~~-G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 341 HVFLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CCEEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC
T ss_pred eeEEeCC-CCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeC
Confidence 3444555 9999999999988888888888 679988899999998777888863
No 98
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=34.74 E-value=50 Score=32.91 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=39.2
Q ss_pred cCceeeeeeccccccccCCCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHh-CcE
Q 007503 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (601)
Q Consensus 315 elplr~~~vg~l~R~e~~g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~l-G~~ 379 (601)
..|++++++|.+||.+.... ....||+|.+.-+.|.+-. -.+ +...+..+++.+ |++
T Consensus 130 ~~~~riFEiG~Vfr~d~~d~----~h~~Ef~~Le~~~~g~~~d-f~d---lKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 130 QGPVKIICPGKVYRRDSDDA----THSHQFTQIEGLVVDKNIK-MSD---LKGTLELVAKKLFGAD 187 (294)
T ss_dssp CSCEEEEEEEEEECCCCCBT----TBCSEEEEEEEEEEESSCC-HHH---HHHHHHHHHHHHHCTT
T ss_pred CCCccEEEEcCEEecCCCCC----CCCChhhEEEEEEECCCCC-HHH---HHHHHHHHHHHHhCCC
Confidence 56899999999999754222 2446999999888885322 222 455666677776 863
No 99
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=34.72 E-value=45 Score=30.21 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=44.8
Q ss_pred CCCceEEEEecCCCc------HHHHHHHHHHHHHcCCEEE----EeCCCCcHHHHHHHHHhcCCcEEEEEcccc
Q 007503 502 LSPRQAIVCPVSEKS------QPYALQVRDHIYRAGYYVD----VDTTDRKIQKKVREAQLAQYNFILVVGEEE 565 (601)
Q Consensus 502 lsp~qv~Vip~~~~~------~~~A~~i~~~Lr~~Gi~v~----~d~~~~~l~kki~~A~~~g~~~iivvG~~E 565 (601)
..+..|.|+..+++. ..-...+++.|++.|+.+. +.+. ..+.+.++.|-..++..+|+-|---
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 345578888888643 2234678899999998653 3445 7788999988766899999987643
No 100
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=34.22 E-value=53 Score=36.45 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=45.6
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
+..|++++++|.+||.+.. .. ....||+|.+.=+.|.+- .-.+ +...+..+++.||+. ++++-+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~lDa----th~~Ef~qLeGlv~G~~v-dF~D---LKGvLE~LL~~LGi~~vrfrps 286 (648)
T 2odr_B 221 KPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGV-DIND---GKAIAEGLLSQFGFTNFKFIPD 286 (648)
T ss_dssp SCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTC-CHHH---HHHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCeEEEEEeeEEecCccccc----cCCCcceEEEEEEECCCC-CHHH---HHHHHHHHHHHcCCCeEEEEEC
Confidence 4678999999999996543 32 345899999988888632 2233 566777788888984 666543
No 101
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=34.03 E-value=53 Score=36.49 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=45.6
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
+..|++++++|.+||.+.. .. ....||+|.+.=+.|.+- .-.+ +...+..+++.||+. ++++-+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~lDa----th~~Ef~qLeGlv~G~~v-dF~D---LKGvLE~LL~~LGi~~vrfrps 286 (665)
T 2odr_A 221 KPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGV-DIND---GKAIAEGLLSQFGFTNFKFIPD 286 (665)
T ss_dssp SCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTC-CHHH---HHHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCeEEEEEeeEEecCccccc----cCCCcceEEEEEEECCCC-CHHH---HHHHHHHHHHHcCCCeEEEEEC
Confidence 4678999999999996543 32 345899999988888632 2233 566777788888984 666543
No 102
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=33.83 E-value=54 Score=36.55 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=45.9
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
+..|++++++|.+||.+.. .. ....||+|.+.=+.|.+- .-.+ +...+..+++.||+. ++++-+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~lDa----th~~Ef~qLeGlv~G~~v-DF~D---LKGvLE~LL~~LGi~~vrfrps 286 (685)
T 2odr_D 221 KPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGV-DIND---GKAIAEGLLSQFGFTNFKFIPD 286 (685)
T ss_dssp SCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTC-CHHH---HHHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCeEEEEeccEEecCccccc----cCCCcceEEEEEEECCCC-CHHH---HHHHHHHHHHHcCCCeEEEEEC
Confidence 4678999999999996543 32 345899999988888632 2233 566777788888984 666554
No 103
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=33.60 E-value=57 Score=27.80 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCHHHHHHhhhccc-------------ccceEEEEEcCEEe----eccccccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSL-------------AANALISMVNGVLW----DMTRPLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~-------------~~~~v~a~Vng~l~----dL~~~l~~d~~le~l~ 144 (601)
++|..++...+...+ -.+-+...||++-| .++++|..+.+|.|+.
T Consensus 42 ~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 42 PWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp CCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred CCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 379999988876543 23457889999876 4889999888888865
No 104
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=33.30 E-value=56 Score=36.55 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=45.8
Q ss_pred ccCceeeeeeccccccccC-CCCCCceeeeeeeecCeEEEecCchhHHHHHHHHHHHHHHHHHhCcE-EEEEEc
Q 007503 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (601)
Q Consensus 314 relplr~~~vg~l~R~e~~-g~l~gliR~ReF~Q~d~eifg~~~~~d~Ei~~~i~~~~~~l~~lG~~-~~l~ls 385 (601)
+..|++++++|.+||.+.. .. ....||+|.+.=+.|.+- .-.+ +...+..+++.||+. ++++-+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~lDa----th~~EfhqLeGlv~G~~v-DF~D---LKGvLE~LL~~LGi~~vrfrps 286 (701)
T 2odr_C 221 KPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGV-DIND---GKAIAEGLLSQFGFTNFKFIPD 286 (701)
T ss_dssp SCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTC-CHHH---HHHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCeEEEEEeeEEccCccccc----cCCCcceEEEEEEECCCC-CHHH---HHHHHHHHHHHcCCCeEEEEEC
Confidence 4678999999999996543 32 345899999988888632 2233 566777788888984 666544
No 105
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=31.75 E-value=1.6e+02 Score=27.05 Aligned_cols=59 Identities=12% Similarity=-0.063 Sum_probs=43.9
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHH---hcCCcEEEEE
Q 007503 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQ---LAQYNFILVV 561 (601)
Q Consensus 503 sp~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~---~~g~~~iivv 561 (601)
+.+.|.|+--+......+.+.+..|...|+..++... .++..+-.++++ ..|++.+|.+
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEE
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEe
Confidence 3456888877777888999999999999998887763 577776655554 4688855544
No 106
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=30.30 E-value=1.3e+02 Score=27.43 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeC-CC---C----cHHHHHHHHHhcCCcEEEEEcccc
Q 007503 516 SQPYALQVRDHIYRAGYYVDVDT-TD---R----KIQKKVREAQLAQYNFILVVGEEE 565 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~Gi~v~~d~-~~---~----~l~kki~~A~~~g~~~iivvG~~E 565 (601)
..+-|.++.+.|++.|+.|++-. ++ . .+.++.+.|+..++.+.|-+--+-
T Consensus 31 ~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na 88 (180)
T 3qay_A 31 NKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNA 88 (180)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCC
Confidence 45678889999999999975432 21 1 399999999999999998875543
No 107
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=29.91 E-value=41 Score=30.80 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCHHHHHHhhhcccc------------cceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 007503 101 TSPMDIAQGISKSLA------------ANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (601)
Q Consensus 101 tt~~dia~~i~~~~~------------~~~v~a~Vng~l~dL----~~~l~~d~~le~l~~ 145 (601)
+|+.++...+...++ .+.++..|||+.++. +++|..+.+|.++..
T Consensus 23 ~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 23 ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 689999888764421 244678899999987 889988877777654
No 108
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=29.06 E-value=77 Score=25.91 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=33.1
Q ss_pred CCCHHHHHHhhhcccc---c------------ceEEEEEcCEEee----ccccccCCCCeEEee
Q 007503 100 ETSPMDIAQGISKSLA---A------------NALISMVNGVLWD----MTRPLEADCDLKLFT 144 (601)
Q Consensus 100 ~tt~~dia~~i~~~~~---~------------~~v~a~Vng~l~d----L~~~l~~d~~le~l~ 144 (601)
++|..++...+...+. . +-+...||++.|+ ++++|..+.+|.|+-
T Consensus 31 ~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 31 PVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred CCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 6899998888764331 1 1246889999885 789999988888864
No 109
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=27.78 E-value=1.2e+02 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHc-CCEEEEeC---CCCcHHHHHHHHHhcCCcEEEEEccc
Q 007503 516 SQPYALQVRDHIYRA-GYYVDVDT---TDRKIQKKVREAQLAQYNFILVVGEE 564 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~-Gi~v~~d~---~~~~l~kki~~A~~~g~~~iivvG~~ 564 (601)
..+.|.++.+.|++. |+.|.+.- ..-++.++.+.|+..++.+.|-|--+
T Consensus 30 ~l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~N 82 (179)
T 1jwq_A 30 NLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHAN 82 (179)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccC
Confidence 356678888899999 99998853 24579999999999999998887443
No 110
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=26.96 E-value=2.1e+02 Score=26.11 Aligned_cols=56 Identities=11% Similarity=-0.094 Sum_probs=43.7
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHHh---cCCcEEEEE
Q 007503 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQL---AQYNFILVV 561 (601)
Q Consensus 506 qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~~---~g~~~iivv 561 (601)
.|.|+.-+....+.+.+.+..|+..|+..++-.. .++..+-.++++. .|++.+|.+
T Consensus 13 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 73 (170)
T 1xmp_A 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 73 (170)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5888877777899999999999999999888763 5788877777654 578855544
No 111
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=26.90 E-value=1.5e+02 Score=27.19 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC---c-eEEcCccccCCcEEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 007503 153 TFWHSSAHILGQAIEQQYGC---K-LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (601)
Q Consensus 153 vy~hS~~hlL~~A~~~~fg~---~-l~ig~~i~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~ii 213 (601)
.=-||+-|+++.-+++.... + +-+|| .+=--|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 112 (175)
T 1j6w_A 51 KGIHTLEHLFAGFMRDHLNGDSIEIIDISP-MGCRTGFYMSLI--G-TPNEQKVSEAWLASMQDVL 112 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHCBTTBEEEEEEE-CTTSSEEEEEEE--S-CCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhCccCCCCeEEEeCC-cCcccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 34799999999999998732 2 34454 331149988664 2 455555 555777776664
No 112
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=25.33 E-value=1.6e+02 Score=26.69 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCceEEEEecCCCc----HHHHHHHHHHHHHcCCEEEE----eCCCCcHHHHHHHHHhc-CCcEEEEEccccc
Q 007503 503 SPRQAIVCPVSEKS----QPYALQVRDHIYRAGYYVDV----DTTDRKIQKKVREAQLA-QYNFILVVGEEEA 566 (601)
Q Consensus 503 sp~qv~Vip~~~~~----~~~A~~i~~~Lr~~Gi~v~~----d~~~~~l~kki~~A~~~-g~~~iivvG~~E~ 566 (601)
.+..|.|+.++++. ..-+..+++.|++.|+.+.. .+....+.+.++.|-.. ++..+|+-|.--.
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 34578899988752 33456799999999987653 22335788999998776 6999999886543
No 113
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=24.96 E-value=2.5e+02 Score=25.76 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=44.1
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHH---hcCCcEEEEEc
Q 007503 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQ---LAQYNFILVVG 562 (601)
Q Consensus 506 qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~---~~g~~~iivvG 562 (601)
.|.|+.-+......+.+.+..|+..|+..++-.. .++..+-.++++ ..|++.+|.+.
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 14 KIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp CEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5888877777889999999999999999888763 577777777765 46888555543
No 114
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=24.74 E-value=2.4e+02 Score=25.88 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=42.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHH---HHhcCCcEEEEE
Q 007503 505 RQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVRE---AQLAQYNFILVV 561 (601)
Q Consensus 505 ~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~---A~~~g~~~iivv 561 (601)
..|.|+.-+......+.+.+..|...|+..++-.. .++..+-.++ |...|++.+|.+
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 69 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAG 69 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 35888877777789999999999999998888653 4666665555 566789855544
No 115
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=24.73 E-value=2e+02 Score=25.99 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhC-C---c-eEEcCccccCCcEEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 007503 153 TFWHSSAHILGQAIEQQYG-C---K-LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (601)
Q Consensus 153 vy~hS~~hlL~~A~~~~fg-~---~-l~ig~~i~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~ii 213 (601)
.=-||+-|+++.-+++... . . +-+|| .+=--|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~~iId~sP-MGCrTGFYl~l~--G-~~~~~~v~~~~~~~l~~il 113 (157)
T 1j98_A 51 DTIHTLEHLLAFTIRSHAEKYDHFDIIDISP-MGCQTGYYLVVS--G-ETTSAEIVDLLEDTMKEAV 113 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEEEEEEE-CTTSSEEEEEEE--E-CCCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcCccccCCCCEEEeCC-cCcccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 3479999999999999883 2 3 34454 331149998664 2 355555 455777777664
No 116
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=24.29 E-value=2.5e+02 Score=25.67 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=43.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHH---HhcCCcEEEEEc
Q 007503 505 RQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREA---QLAQYNFILVVG 562 (601)
Q Consensus 505 ~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A---~~~g~~~iivvG 562 (601)
..|.|+.-+......+.+.+..|...|+..++-.. .++..+-.+++ ...|++.+|.+.
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36888877777789999999999999999888763 57777666664 457888555543
No 117
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.97 E-value=91 Score=28.88 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=46.6
Q ss_pred CCceEEEEecCCCc-----HHHHHHHHHHHHHcCCEEEE----eCCCCcHHHHHHHHHhcCCcEEEEEccccc
Q 007503 503 SPRQAIVCPVSEKS-----QPYALQVRDHIYRAGYYVDV----DTTDRKIQKKVREAQLAQYNFILVVGEEEA 566 (601)
Q Consensus 503 sp~qv~Vip~~~~~-----~~~A~~i~~~Lr~~Gi~v~~----d~~~~~l~kki~~A~~~g~~~iivvG~~E~ 566 (601)
.+..|.|++.+++. ..-...+++.|++.|+.+.. .+....+.+.++.|-..++..+|+-|---.
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 45678999888643 23466789999999987653 233356888998886578999999886543
No 118
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=23.86 E-value=2.9e+02 Score=25.55 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=43.5
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHH---hcCCcEEEEE
Q 007503 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQ---LAQYNFILVV 561 (601)
Q Consensus 506 qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~---~~g~~~iivv 561 (601)
.|.|+.-+....+.+.+.+..|...|+..++-.. .++..+-.++++ ..|++.+|.+
T Consensus 15 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 75 (183)
T 1o4v_A 15 RVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAG 75 (183)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 6888877778899999999999999999888763 477777666665 4578855544
No 119
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}
Probab=21.31 E-value=98 Score=26.87 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=47.1
Q ss_pred EEEeCHHHHHHhhhcCh-hhhhhcccCCCCC--cEEEEEeCCeeeeccCCCCCCCCCcceEEEeeeccceeccCCCCCCc
Q 007503 219 RIEVTRDQALEMFSDNN-FKVEIINDLPADK--TITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESL 295 (601)
Q Consensus 219 r~~v~~eeA~~~F~~~~-~K~~li~~~~~~~--~v~vy~~g~~~D~c~Gphvp~Tg~i~~f~l~~~~~g~~l~~~~~~~l 295 (601)
-..++|.+|.++...++ .=.-||..-.... .++|. |. .+ .+.|+.|+|.+..++|++....+
T Consensus 19 f~~isR~eAE~lL~~~~~~GaFLVR~Se~~~~ySLSVR------~~-----~~-~~~VKHYkI~~~~G~y~I~~~~~--- 83 (125)
T 3maz_A 19 FYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIR------QE-----ID-IPRIKHYKVMSVGQNYTIELEKP--- 83 (125)
T ss_dssp BCCCCHHHHHHHHHHCGGGCSEEEEECTTSSSEEEEEE------EC-----SS-SCEEEEEEEEEETTEEEECSSSC---
T ss_pred cCCCCHHHHHHHHhccCCCCcEEEEeCCCCCCEEEEEE------ec-----CC-CCCEeeeEEEEeCCEEEEecCCC---
Confidence 34578999998775433 2233444321111 12221 11 11 56799999999887888764221
Q ss_pred ceeeccccccchhhhhhhccCc
Q 007503 296 QRVYGISYPDKKRLKHAFAELP 317 (601)
Q Consensus 296 ~ri~g~~fp~~~~l~~s~relp 317 (601)
..||+-..|-+.|+.-+
T Consensus 84 -----~~F~SL~eLV~yY~~~a 100 (125)
T 3maz_A 84 -----VTLPNLFSVIDYFVKET 100 (125)
T ss_dssp -----EEESSHHHHHHHHHHHT
T ss_pred -----cCcCCHHHHHHHHHhCC
Confidence 46888888888887543
No 120
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=21.15 E-value=4e+02 Score=24.19 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=44.0
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHHh---cCCcEEEEEcc
Q 007503 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQL---AQYNFILVVGE 563 (601)
Q Consensus 506 qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~~---~g~~~iivvG~ 563 (601)
.|.|+.-+......+.+.+..|...|+..++-.. .++..+-+++++. .|+..+|.+..
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 69 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAG 69 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEC
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 5888877777789999999999999998888763 5777777777654 56776555533
No 121
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=20.89 E-value=3.3e+02 Score=25.11 Aligned_cols=57 Identities=9% Similarity=-0.078 Sum_probs=44.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeCC--CCcHHHHHHHHHh---cCCcEEEEE
Q 007503 505 RQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVREAQL---AQYNFILVV 561 (601)
Q Consensus 505 ~qv~Vip~~~~~~~~A~~i~~~Lr~~Gi~v~~d~~--~~~l~kki~~A~~---~g~~~iivv 561 (601)
..|.|+.-+......+.+.+..|...|+..++-.. .++..+-.++++. .|++.+|.+
T Consensus 22 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 83 (182)
T 1u11_A 22 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAG 83 (182)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 35888877778899999999999999999888763 5788887777654 578855544
No 122
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=20.48 E-value=2e+02 Score=27.49 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHHcC-CEEEEe---CCCCcHHHHHHHHHhcCCcEEEEEcccc
Q 007503 516 SQPYALQVRDHIYRAG-YYVDVD---TTDRKIQKKVREAQLAQYNFILVVGEEE 565 (601)
Q Consensus 516 ~~~~A~~i~~~Lr~~G-i~v~~d---~~~~~l~kki~~A~~~g~~~iivvG~~E 565 (601)
..+.|.++.+.|++.| +.|.+. +...++..+.+.|+..++.+.|-|--+-
T Consensus 32 ~l~ia~~l~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na 85 (234)
T 3ne8_A 32 TLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADT 85 (234)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCC
Confidence 3566788888898888 988884 2345799999999999999999886553
No 123
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.08 E-value=1.9e+02 Score=25.96 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCceEEEEecCCCc----HHHHHHHHHHHHHcCCEEEE----eCCCCcHHHHHHHHHh-cCCcEEEEEcccc
Q 007503 503 SPRQAIVCPVSEKS----QPYALQVRDHIYRAGYYVDV----DTTDRKIQKKVREAQL-AQYNFILVVGEEE 565 (601)
Q Consensus 503 sp~qv~Vip~~~~~----~~~A~~i~~~Lr~~Gi~v~~----d~~~~~l~kki~~A~~-~g~~~iivvG~~E 565 (601)
.+..|.|+.++++. ..-+..+++.|++.|+.+.. .+....+.+.++.|-. .++..+|+-|.--
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 34578899888754 33456789999999987643 2233578889998875 3799999988653
Done!