Query 007504
Match_columns 601
No_of_seqs 384 out of 2548
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 11:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0136 Acyl-CoA oxidase [Lipi 100.0 3E-109 7E-114 863.1 50.1 588 1-599 9-607 (670)
2 PLN02443 acyl-coenzyme A oxida 100.0 4E-107 9E-112 901.0 64.1 600 1-600 1-600 (664)
3 PTZ00460 acyl-CoA dehydrogenas 100.0 4E-102 9E-107 860.1 60.8 576 5-600 2-586 (646)
4 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 2.6E-99 6E-104 770.3 46.4 582 5-599 19-626 (661)
5 PLN02312 acyl-CoA oxidase 100.0 1.2E-97 3E-102 827.6 58.6 567 11-599 46-647 (680)
6 PLN02636 acyl-coenzyme A oxida 100.0 1.7E-97 4E-102 828.2 59.0 574 12-600 48-652 (686)
7 cd01150 AXO Peroxisomal acyl-C 100.0 5E-97 1E-101 821.3 60.8 558 6-599 2-574 (610)
8 KOG0141 Isovaleryl-CoA dehydro 100.0 2.6E-61 5.6E-66 460.2 21.6 359 27-441 41-420 (421)
9 KOG0139 Short-chain acyl-CoA d 100.0 1.9E-61 4.2E-66 469.2 18.5 342 28-428 38-398 (398)
10 KOG0140 Medium-chain acyl-CoA 100.0 8E-60 1.7E-64 449.9 21.0 359 26-443 27-407 (408)
11 TIGR03203 pimD_small pimeloyl- 100.0 2.9E-53 6.4E-58 449.3 29.2 353 27-436 4-374 (378)
12 PRK09463 fadE acyl-CoA dehydro 100.0 1.7E-50 3.6E-55 451.5 44.8 503 10-572 60-622 (777)
13 cd01161 VLCAD Very long chain 100.0 3.3E-50 7.1E-55 431.3 30.1 366 18-441 20-407 (409)
14 cd01162 IBD Isobutyryl-CoA deh 100.0 8E-50 1.7E-54 423.9 31.9 354 28-440 2-374 (375)
15 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.3E-49 2.9E-54 423.8 31.8 352 27-440 13-382 (386)
16 PRK13026 acyl-CoA dehydrogenas 100.0 1.6E-48 3.4E-53 433.9 41.1 319 68-434 109-465 (774)
17 KOG0137 Very-long-chain acyl-C 100.0 5.9E-49 1.3E-53 405.9 34.5 470 70-591 112-621 (634)
18 cd01160 LCAD Long chain acyl-C 100.0 1.9E-49 4.1E-54 420.9 31.2 352 29-438 1-371 (372)
19 PRK03354 crotonobetainyl-CoA d 100.0 3.3E-49 7.2E-54 419.6 31.7 358 27-442 5-379 (380)
20 cd01157 MCAD Medium chain acyl 100.0 2.8E-49 6.1E-54 420.4 30.9 355 28-440 2-377 (378)
21 PLN02526 acyl-coenzyme A oxida 100.0 5E-49 1.1E-53 421.9 31.3 365 15-441 14-399 (412)
22 PRK12341 putative acyl-CoA deh 100.0 1.2E-48 2.6E-53 415.7 31.9 356 27-441 5-379 (381)
23 cd01156 IVD Isovaleryl-CoA deh 100.0 1E-48 2.2E-53 415.9 31.2 355 28-440 3-376 (376)
24 PLN02519 isovaleryl-CoA dehydr 100.0 1.3E-48 2.7E-53 418.2 31.8 357 28-440 27-402 (404)
25 PTZ00461 isovaleryl-CoA dehydr 100.0 1.2E-48 2.6E-53 419.2 30.9 353 27-441 37-408 (410)
26 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.3E-48 4.9E-53 412.3 30.5 350 28-437 2-370 (372)
27 TIGR03204 pimC_large pimeloyl- 100.0 2.7E-48 5.8E-53 414.1 29.6 358 27-439 4-393 (395)
28 KOG0138 Glutaryl-CoA dehydroge 100.0 6.7E-48 1.5E-52 367.0 24.3 362 17-440 47-426 (432)
29 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 3.6E-47 7.8E-52 406.0 31.8 359 31-439 3-393 (394)
30 cd01158 SCAD_SBCAD Short chain 100.0 8.7E-47 1.9E-51 400.7 29.9 354 29-440 1-373 (373)
31 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.8E-46 3.9E-51 400.9 28.1 359 29-442 7-390 (393)
32 PTZ00456 acyl-CoA dehydrogenas 100.0 1.3E-45 2.7E-50 408.4 28.9 340 71-439 103-479 (622)
33 PLN02876 acyl-CoA dehydrogenas 100.0 2.1E-45 4.5E-50 424.1 31.6 289 106-441 525-819 (822)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.2E-44 2.6E-49 377.3 30.4 326 29-436 1-327 (327)
35 cd01154 AidB Proteins involved 100.0 2.7E-44 5.8E-49 385.6 32.2 303 96-439 110-417 (418)
36 cd01152 ACAD_fadE6_17_26 Putat 100.0 1E-44 2.2E-49 385.4 27.7 352 29-439 1-379 (380)
37 PRK11561 isovaleryl CoA dehydr 100.0 6.9E-44 1.5E-48 386.1 29.0 290 105-440 139-441 (538)
38 cd01153 ACAD_fadE5 Putative ac 100.0 2.5E-43 5.5E-48 377.6 29.1 340 70-436 39-404 (407)
39 cd01163 DszC Dibenzothiophene 100.0 6.7E-41 1.5E-45 355.9 27.3 328 70-439 25-372 (377)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 1.5E-38 3.4E-43 342.1 41.5 421 70-590 53-515 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 1.9E-36 4E-41 320.9 23.3 326 70-439 25-369 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 2.2E-35 4.7E-40 277.6 19.4 287 109-441 91-383 (392)
43 PF01756 ACOX: Acyl-CoA oxidas 99.9 4E-22 8.7E-27 190.0 15.8 124 476-599 1-128 (187)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.9 3.6E-20 7.9E-25 199.4 22.0 248 111-406 119-391 (477)
45 PF00441 Acyl-CoA_dh_1: Acyl-C 99.8 6.4E-20 1.4E-24 168.7 16.6 145 276-439 6-150 (150)
46 PF14749 Acyl-CoA_ox_N: Acyl-c 99.6 1.2E-14 2.5E-19 129.3 11.1 116 17-132 1-125 (125)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 2.8E-13 6E-18 100.3 5.8 51 134-192 1-51 (52)
48 PF08028 Acyl-CoA_dh_2: Acyl-C 99.3 2E-11 4.3E-16 110.0 12.1 130 286-426 1-132 (134)
49 TIGR02310 HpaB-2 4-hydroxyphen 98.5 1.4E-05 3E-10 86.7 21.1 239 118-401 137-398 (519)
50 COG2368 Aromatic ring hydroxyl 98.4 1.6E-05 3.5E-10 83.3 19.1 254 113-408 125-401 (493)
51 PF02771 Acyl-CoA_dh_N: Acyl-C 98.3 3E-07 6.6E-12 79.9 2.6 94 28-130 1-113 (113)
52 PF11794 HpaB_N: 4-hydroxyphen 97.4 0.00092 2E-08 66.5 10.3 125 117-255 123-263 (264)
53 PF03241 HpaB: 4-hydroxyphenyl 82.8 7.6 0.00016 37.4 8.9 76 324-406 44-119 (205)
54 PTZ00457 acyl-CoA dehydrogenas 80.5 13 0.00028 41.2 10.7 85 300-405 418-502 (520)
55 KOG0137 Very-long-chain acyl-C 72.2 48 0.001 36.7 11.8 68 323-401 536-603 (634)
56 PF02607 B12-binding_2: B12 bi 25.7 1.9E+02 0.0041 22.5 5.4 35 564-598 45-79 (79)
57 COG1902 NemA NADH:flavin oxido 24.1 41 0.00089 35.5 1.5 60 384-448 154-215 (363)
No 1
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-109 Score=863.10 Aligned_cols=588 Identities=51% Similarity=0.792 Sum_probs=548.3
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCC-CCcccCCCHHHHHHHHHHHHHHHHHHHHHc
Q 007504 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIEL 79 (601)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (601)
+|| ||++||.+++||+++|..+|+|++|...+++++++.+.++|.|. ..+...++++|.+....++...+++.+.++
T Consensus 9 ~Np--dl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el 86 (670)
T KOG0136|consen 9 DNP--DLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMREL 86 (670)
T ss_pred CCh--HHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355 99999999999999999999999999999999999999999998 445578999999999999999888888888
Q ss_pred cCCHH-----HHHHHhhhcCCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEE
Q 007504 80 RLSEE-----EASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTAT 154 (601)
Q Consensus 80 g~~~~-----~gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~ 154 (601)
.+... .+.....+...+.|+.+|++||.++|...||+||.++||++..+.+++||||+||.|||+|+++++|||+
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~At 166 (670)
T KOG0136|consen 87 QDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTAT 166 (670)
T ss_pred HhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeee
Confidence 77422 1222233344578999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCC
Q 007504 155 FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 234 (601)
Q Consensus 155 ~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~ 234 (601)
||+.+++||||||+.++.|||++++|+.|+|++|+|+++++|+++|+|.|+||+||.+||.++|||+|+|+++|+| +
T Consensus 167 yD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~ 243 (670)
T KOG0136|consen 167 YDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---F 243 (670)
T ss_pred ecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccC
Q 007504 235 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (601)
Q Consensus 235 ~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg 314 (601)
++.|||++.|||||||+++||+++++|.++|.|..++.+. ..|++|...|..++....-.+.+|++||+||+..|+||.
T Consensus 244 ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~ 322 (670)
T KOG0136|consen 244 NGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSE 322 (670)
T ss_pred cCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999988775 899999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 007504 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (601)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~ 394 (601)
..+++||++|+|||++|+||+|.+|..||.+++..++.++|.+..+.+..++.+.++++|++++++|+.+|+.+.+.++.
T Consensus 323 i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~ 402 (670)
T KOG0136|consen 323 IRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQ 402 (670)
T ss_pred CCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHhhhhcCCcccc
Q 007504 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 474 (601)
Q Consensus 395 ~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 474 (601)
||+.||||||++.++++.+|-.+.+.|||||+|.||+.|+||+|+|.+.++.+|+++.++..|+....... ......
T Consensus 403 ~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~~---~~~~~~ 479 (670)
T KOG0136|consen 403 CRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALKP---QLISGA 479 (670)
T ss_pred HHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccCc---cccccc
Confidence 99999999999999999999999999999999999999999999999999999998888999997554321 122234
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH----HhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHH
Q 007504 475 EDWLNPSAILEAFEARAIRMSVACAQNL----SKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 550 (601)
Q Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l----~~~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~ 550 (601)
.++.+ + ++++|++++.+++..+.++| +.+.+.+.+||.++++|+++|++|+++++++.|++.|++...++.+++
T Consensus 480 ~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk~f~~kv~~~~~~~~vk~ 557 (670)
T KOG0136|consen 480 GDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVKTFLEKVEKHISDPAVKE 557 (670)
T ss_pred cchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 56666 5 99999999999999988885 445678899999999999999999999999999999997567889999
Q ss_pred HHHHHHHHHhHHHHHhhhhHHHhc-CCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 551 ILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 551 vL~~l~~L~al~~i~~~~~~fl~~-~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
||.+||.||+++.|.+++|+|+.. +|+|+.|++.++.++.+++++||||
T Consensus 558 vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpn 607 (670)
T KOG0136|consen 558 VLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPN 607 (670)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999 9999999999999999999999997
No 2
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.1e-107 Score=901.02 Aligned_cols=600 Identities=87% Similarity=1.359 Sum_probs=545.1
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcc
Q 007504 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (601)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (601)
|.|+.+|++||++++||+++|+.+|+|+++..+.++.+++++.++|+|...+..+++|+++++...++..++.+.+.++|
T Consensus 1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~ 80 (664)
T PLN02443 1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR 80 (664)
T ss_pred CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67888999999999999999999999999999999999999999999998767789999999999999888998888999
Q ss_pred CCHHHHHHHhhhcCCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007504 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (601)
Q Consensus 81 ~~~~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~ 160 (601)
|...........++.+.++.+|+++|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++|||++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~ 160 (664)
T PLN02443 81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160 (664)
T ss_pred CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence 87654444444556666788999999999999999999999999999999999999999999999999999999999899
Q ss_pred eEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccce
Q 007504 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (601)
Q Consensus 161 ~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~ 240 (601)
+||||||+++|+||||+|++..||+++|+||++++++++|+++|+||+||+++|.+.|||+++++++|+|.+++++.|||
T Consensus 161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng 240 (664)
T PLN02443 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240 (664)
T ss_pred EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence 99999999999999999955899999999999888888999999999999999999999999999999993223568999
Q ss_pred EEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007504 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (601)
Q Consensus 241 ~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~ 320 (601)
+|.|||||||++++|+++++|+++|.+..+..+.++.++.|..+|+.+++.++|++++|+++|++|+++|+|||.+++.+
T Consensus 241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~ 320 (664)
T PLN02443 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP 320 (664)
T ss_pred EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence 99999999999999999999999999987554434788999999999999999999999999999999999999977777
Q ss_pred cccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007504 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (601)
Q Consensus 321 e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~G 400 (601)
|.|+++||++|++|+|+++.+++++++.+++++.+++.......++.+..++.|..++++|+++++.+.+++++|+|+||
T Consensus 321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cG 400 (664)
T PLN02443 321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCG 400 (664)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998865544444444445678899999999999999999999999999
Q ss_pred cccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHhhhhcCCccccCCCCCH
Q 007504 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480 (601)
Q Consensus 401 G~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (601)
|+||+++++++++++|++..+|+||+|+++++++|+++++.+.+..+++++.++..||.+............+..+++|+
T Consensus 401 G~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 480 (664)
T PLN02443 401 GHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTAEDWLNP 480 (664)
T ss_pred CccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhhhhcccccccccccccCH
Confidence 99999999999999999999999999999999999999999988878888888889997665444333333455688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh
Q 007504 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYA 560 (601)
Q Consensus 481 ~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~vL~~l~~L~a 560 (601)
++++++|++|+++++..++++++.+.+..++||+++++++++|+||++++++++|+++|++..++++++++|.+||.||+
T Consensus 481 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~f~~~~~~~~~~~~~~~~L~~l~~L~~ 560 (664)
T PLN02443 481 SVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKKQLQNLCYIYA 560 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999998777778999999999999999999999999999999863458899999999999999
Q ss_pred HHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007504 561 LHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 600 (601)
Q Consensus 561 l~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~~ 600 (601)
|+.|+++++||+++||+|++|++.|++.|.+||.+|||+.
T Consensus 561 l~~i~~~~~~fl~~~~ls~~~~~~i~~~i~~l~~~lrp~a 600 (664)
T PLN02443 561 LYLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNA 600 (664)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 9999999999999999999999999999999999999973
No 3
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4e-102 Score=860.14 Aligned_cols=576 Identities=33% Similarity=0.552 Sum_probs=510.3
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHccCCH
Q 007504 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (601)
Q Consensus 5 ~~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 83 (601)
.+|++||++++||+++|+.+|+|++|+.+.+..+++++.++|.|..... .+++|+++++....+..++.+.+ +. +
T Consensus 2 ~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~---~~-~ 77 (646)
T PTZ00460 2 QMLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHL---NL-A 77 (646)
T ss_pred hhHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHc---Cc-h
Confidence 4799999999999999999999999999999999999999999987633 56899999999888877776653 22 2
Q ss_pred HHHHHHhhhc--CCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCe
Q 007504 84 EEASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (601)
Q Consensus 84 ~~gg~~~~~~--~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~ 161 (601)
+.......++ +.+.++.+|+++|+++|..+||++|+++|||++.+|++++|||+|||+||||+++++|||++|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~de 157 (646)
T PTZ00460 78 NPNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNE 157 (646)
T ss_pred hhhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCE
Confidence 2111112233 34567889999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceE
Q 007504 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (601)
Q Consensus 162 ~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~ 241 (601)
||||||+++|+|+||+|+|..||+++|+||+..+++++|+++|+||+||.++|.+.|||+++++++|+| +++.+||.
T Consensus 158 fvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G---~~~~dng~ 234 (646)
T PTZ00460 158 FVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMG---YAVKDNGF 234 (646)
T ss_pred EEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccC---cCCCCceE
Confidence 999999999999999986789999999999988778899999999999999999999999999999999 99999999
Q ss_pred EEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCc
Q 007504 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (601)
Q Consensus 242 v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e 321 (601)
|.|||||||++++|+++++|+++|.|..++..+ ..+..|..+|+.+++.++|++++|+++|++|+++|+|||+ ++++|
T Consensus 235 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~-~~~~E 312 (646)
T PTZ00460 235 LSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTN-DNKQE 312 (646)
T ss_pred EEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC-CCCCC
Confidence 999999999999999999999899876544344 7788999999999999999999999999999999999997 45669
Q ss_pred ccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007504 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (601)
Q Consensus 322 ~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG 401 (601)
.||++||++|++|+||++.+++++++++++++++++........+....++.|..++++|+++++.+.+++++|+|+|||
T Consensus 313 ~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG 392 (646)
T PTZ00460 313 NSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGG 392 (646)
T ss_pred CcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998765444333333345678999999999999999999999999999
Q ss_pred ccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCC-CCCccccccccchhHhhhhcCCccccCCCCCH
Q 007504 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480 (601)
Q Consensus 402 ~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (601)
+||++++++++++||++..+|+||+|+++++++|+.+++.+.+..++ +.+.++..||.+.... ..++.++
T Consensus 393 ~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~ 463 (646)
T PTZ00460 393 HGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHITEK---------LADQTTI 463 (646)
T ss_pred ccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhhhh---------ccccCCh
Confidence 99999999999999999999999999999999999999998876554 3455577788654211 1235567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHH
Q 007504 481 SAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAE-LAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEIL 555 (601)
Q Consensus 481 ~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~-~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~vL~~l 555 (601)
+++.++|++|+.+++..+++++++ +.+.+++||+ ++++++++|+||++++++++|++.|++ + +++++++|++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah~~~~~~~~f~~~i~~-~-~~~~~~vL~~l 541 (646)
T PTZ00460 464 ESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRFIEYFNYLCFLDTINN-A-NKSTKEILTQL 541 (646)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHH
Confidence 889999999999998888777653 4566789999 789999999999999999999999986 4 88999999999
Q ss_pred HHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007504 556 CHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 600 (601)
Q Consensus 556 ~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~~ 600 (601)
|.||+|+.|++++|+|+++||+|++|++.|++.+.+||.+|||+.
T Consensus 542 ~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 586 (646)
T PTZ00460 542 ADLYGITMLLNNPQGLIEKGQITVEQIKLLQETREQLYPIIKPNA 586 (646)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 999999999999999999999999999999999999999999973
No 4
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-99 Score=770.30 Aligned_cols=582 Identities=34% Similarity=0.532 Sum_probs=500.9
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCCH-
Q 007504 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE- 83 (601)
Q Consensus 5 ~~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 83 (601)
.+|..+|+.++|||++|+.+++|-.+..+++..+.+.++++|.+-..+....+++++++... .++|+ +.+.|..+
T Consensus 19 ~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~---~r~~~-l~~~gv~~~ 94 (661)
T KOG0135|consen 19 SPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCM---KRIKR-LVELGVFKF 94 (661)
T ss_pred CCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHH---HHHHH-HHHhccCcc
Confidence 37899999999999999999998334889999999999999955555556778888876543 33343 34446531
Q ss_pred -------H---HH---HHHhhhcCC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCC
Q 007504 84 -------E---EA---SMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG 148 (601)
Q Consensus 84 -------~---~g---g~~~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~ 148 (601)
+ .- -...++.+. +.-+.+|+.+|+.++..+||+.+++ |+..+.+.+++|||||||++||||+++
T Consensus 95 ~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~ 173 (661)
T KOG0135|consen 95 WLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKG 173 (661)
T ss_pred eeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccc
Confidence 1 11 111233333 4567899999999999999998777 999999999999999999999999999
Q ss_pred CceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCc
Q 007504 149 LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228 (601)
Q Consensus 149 ~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~ 228 (601)
|+|||||||.+++||||||+.++.|+||+|+|.+|+|++|+|++..+|.++|+|.|||||||++|+...|||+|+|++.|
T Consensus 174 I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K 253 (661)
T KOG0135|consen 174 IQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHK 253 (661)
T ss_pred eeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCc-c--hh-hHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007504 229 FGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-P--RQ-LLYGTMVYVRQTIVADASCALSRAVCIAT 304 (601)
Q Consensus 229 ~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~-~--~~-~~~~~l~~~r~~~~a~~~g~~~~al~~a~ 304 (601)
.| ++|.|||.++|+|||||++|||+++++|.++|.|.++.. + ++ +..+.+..+|++++..++|+++-+++||+
T Consensus 254 ~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAI 330 (661)
T KOG0135|consen 254 IG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAI 330 (661)
T ss_pred cc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhh
Confidence 99 999999999999999999999999999999999988432 2 22 46788889999999999999999999999
Q ss_pred HHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHH
Q 007504 305 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 384 (601)
Q Consensus 305 ~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~ 384 (601)
||+..|+|||++.++||+||.+||++|+||.|+++.+++++++..++...|.+...+...+.. ..++|++++++|.++
T Consensus 331 RYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~~~ 408 (661)
T KOG0135|consen 331 RYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKPVA 408 (661)
T ss_pred hhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccchhh
Confidence 999999999998888999999999999999999999999999999999999887766554332 478999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHh
Q 007504 385 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL 464 (601)
Q Consensus 385 t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (601)
||...+++++|+++||||||..++.++.+-.|..+++||||||+|+.||++++||+++..- ...+|.++..|+......
T Consensus 409 TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~-~~e~p~~~~~~ln~~~s~ 487 (661)
T KOG0135|consen 409 TWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQ-KKETPLSFVGFLNEYPSS 487 (661)
T ss_pred hHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHh-hccCCchHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999873 334455566666544433
Q ss_pred hhhcCCccccCCCC-CHHHHHHHHHHHHHHHHHH-HHHH---HHhcCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 007504 465 MQCHCGVQKAEDWL-NPSAILEAFEARAIRMSVA-CAQN---LSKFTNQEEGFAELAADLV-EAAVAHCQLIVVSKFIEK 538 (601)
Q Consensus 465 ~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~-~~~~---l~~~~~~~~~~n~~~~~l~-~la~a~~~~~~~~~f~~~ 538 (601)
...........+.+ ++++++ ++.|..++++.+ .+.+ ++.+...+++||.++++.. .+|.||+|+.++..|+++
T Consensus 488 ~~~~~~s~~~~d~l~~~~f~~-~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~~~l~h 566 (661)
T KOG0135|consen 488 PDPVLASQLVSDTLRSSQFQL-CYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQRFLDH 566 (661)
T ss_pred CCccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222222233444 467776 666666665444 3333 4556778899999987665 499999999999999999
Q ss_pred HhccCCCCChHHHHHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 539 LQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 539 v~~~~~~~~~~~vL~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
+.+ +++++++.||..++++|||++|++|++.|+..||++++++..|++.++.+|.+|||+
T Consensus 567 ~~k-~~~~s~k~vL~l~~dlyal~lLek~~~ll~~~gy~s~~~a~~vr~~~l~lc~elr~~ 626 (661)
T KOG0135|consen 567 VHK-LPDPSVKAVLGLVRDLYALWLLEKHPALLYITGYVSGEFAGDVREKVLKLCAELRPV 626 (661)
T ss_pred Hhc-CCChhHHHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHHHHHHhccHH
Confidence 999 999999999999999999999999999999999999999999999999999999985
No 5
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1.2e-97 Score=827.57 Aligned_cols=567 Identities=29% Similarity=0.468 Sum_probs=488.7
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC---------cccCCCHHHHHHHHHHHHHHHHHHHHHccC
Q 007504 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD---------NRAMLSRKELFKNTLRKAAYAWKRIIELRL 81 (601)
Q Consensus 11 r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (601)
..+++||+++|+.+|+| ++.++|+++++++.++|.|... +...+++++.++.+. +.|+.+.+.|+
T Consensus 46 ~~~~sf~~~~l~~~l~g--~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~~----~~~~~l~~~g~ 119 (680)
T PLN02312 46 NESYAFDVKEMRKLLDG--HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREITM----KRILYLLERGV 119 (680)
T ss_pred cccCCCCHHHHHHHhCC--ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhHH----HHHHHHHHhhh
Confidence 78999999999999998 5588999999999999999753 345678888876654 44555555553
Q ss_pred -----CHHH-HHHH--------hhhcCC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCC
Q 007504 82 -----SEEE-ASML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145 (601)
Q Consensus 82 -----~~~~-gg~~--------~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd 145 (601)
+++. ++.. .+..+. +.++.+|+++|+++|..+||++||++|||++.+|++++|||+|||+||||
T Consensus 120 ~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSd 199 (680)
T PLN02312 120 FRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSN 199 (680)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcc
Confidence 2221 1111 111222 23577888899999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeC
Q 007504 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDI 225 (601)
Q Consensus 146 ~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~ 225 (601)
+++++|||++|+++|+||||||+++|+|+||+|++..||+++|+||+..+++++|+++|+||+||.++ .+.|||+|+++
T Consensus 200 v~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~-~~~PGV~ig~~ 278 (680)
T PLN02312 200 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDG-NICPNIRIADC 278 (680)
T ss_pred hhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCC-CCCCCEEeccC
Confidence 99999999999888999999999999999999944899999999999887788999999999999754 78999999999
Q ss_pred CCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCc---chh-hHHhHHHHHHHHhHHHHHHHHHHHHH
Q 007504 226 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PRQ-LLYGTMVYVRQTIVADASCALSRAVC 301 (601)
Q Consensus 226 ~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~---~~~-~~~~~l~~~r~~~~a~~~g~~~~al~ 301 (601)
++|+| +++.+|++|.|||||||++++|+++++|+++|.|.++.. .++ .++..|..+|+.+++.++|++++|++
T Consensus 279 ~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 279 GHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred CCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999987422 221 34688999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHH
Q 007504 302 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381 (601)
Q Consensus 302 ~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK 381 (601)
+|++|+++|+|||.++++||+||++||++|++|+||++.+|++++.+.++.+.+++. ......+.|..++++|
T Consensus 356 iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------~~~~~~~~~~~as~aK 428 (680)
T PLN02312 356 IAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------TPESNKAIHVVSSGFK 428 (680)
T ss_pred HHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccchhHHHHHHHH
Confidence 999999999999987788899999999999999999999999999888887766531 1112246788999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccc--ccccc
Q 007504 382 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGT--TTYMG 459 (601)
Q Consensus 382 ~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~--~~~l~ 459 (601)
++++|.+.+++++|+|+|||+||+.++++++++||+++.+|+||+|+++++++|+++++.+.+.++++++.+. .+|+.
T Consensus 429 a~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~ 508 (680)
T PLN02312 429 AVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMN 508 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999887777765542 45653
Q ss_pred chhHhhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc----CChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007504 460 RAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF----TNQEEGFAELAADLVEAAVAHCQLIVVSKF 535 (601)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~----~~~~~~~n~~~~~l~~la~a~~~~~~~~~f 535 (601)
.... ......+..++.|+++++++|++|+.+++..++++|++. .+...+||.+...++++|+||++++++++|
T Consensus 509 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~i~~~F 585 (680)
T PLN02312 509 GPRP---VIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAFLLSYQLAEDLGRAFSERAILQTF 585 (680)
T ss_pred cccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2100 000111346789999999999999999999998887643 345789999999999999999999999999
Q ss_pred HHHHhccCCCCChHHHHHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 536 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 536 ~~~v~~~~~~~~~~~vL~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
+++|++ +.+++++++|++||+||+|+.|+++ ++|+++||||++|++.|++.+.+||.+|||+
T Consensus 586 ~~~i~~-~~~~~~~~vL~~L~~Lyal~~i~~~-~~fl~~~~ls~~~~~~i~~~i~~L~~~lrp~ 647 (680)
T PLN02312 586 LDAEAN-LPTGSLKDVLGLLRSLYVLISLDED-PSFLRYGYLSPDNVALVRKEVAKLCGELRPH 647 (680)
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHHhHHHHHhh-HHHHhcCCCCHHHHHHHHHHHHHHHHHHhHh
Confidence 999997 7899999999999999999999766 7999999999999999999999999999997
No 6
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.7e-97 Score=828.20 Aligned_cols=574 Identities=32% Similarity=0.502 Sum_probs=488.1
Q ss_pred ccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHH-
Q 007504 12 KKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEE- 85 (601)
Q Consensus 12 ~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~- 85 (601)
++++||+++|+.++++ ++.++++.+++|+.++|.|..+. ..+.++..+.. ..++|+.+.++|+ +++.
T Consensus 48 ~~~~f~~~~l~~~l~~--~~~~~r~~v~~~~~~~~~~~~~~--~~~~~~~~e~~---~~~l~~~~~~~g~~~~~~~~~~~ 120 (686)
T PLN02636 48 IKLSVNTEKLSLYMRG--KHRDIQEKIYEFFNSRPDLQTPV--EISKDEHRELC---MRQLTGLVREAGIRPMKYLVEDP 120 (686)
T ss_pred ccCCCCHHHHHhhcCC--cHHHHHHHHHHHHHhCccccCCc--hhhHHHhhhhH---HHHHHHHHHhcCccccccccCCH
Confidence 5899999999999986 45679999999999998774322 12222222211 1456777888887 2111
Q ss_pred --HHHH---hhhcCC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCC
Q 007504 86 --ASML---RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (601)
Q Consensus 86 --gg~~---~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~ 158 (601)
.... .+..+. +.++.+|+++|+++|..+||+|||++|||++.+|++++|||+|||+||||+++++|||++|++
T Consensus 121 ~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~ 200 (686)
T PLN02636 121 AKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPL 200 (686)
T ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCC
Confidence 1111 111122 345678989999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccC------CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCC
Q 007504 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD------GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232 (601)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~------~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~ 232 (601)
+|+||||||+++|+||||+|++..||+++|+||++.+ ++++|+++||||+|++++|.+.|||+|+++++|+|
T Consensus 201 ~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G-- 278 (686)
T PLN02636 201 TDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVG-- 278 (686)
T ss_pred CCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccC--
Confidence 8999999999999999999944569999999999743 24689999999999999999999999999999999
Q ss_pred CCCCccceEEEecccccCcCccccccccccCCCceeccCc--c-h-hhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 007504 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV--P-R-QLLYGTMVYVRQTIVADASCALSRAVCIATRYSA 308 (601)
Q Consensus 233 ~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~--~-~-~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~ 308 (601)
+++.+||.|.|||||||+++||+++++|+++|.|.+... . . ..+++.|..+|+.+++.++|++++|+++|++|+.
T Consensus 279 -~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~ 357 (686)
T PLN02636 279 -LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSL 357 (686)
T ss_pred -CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987321 1 1 2578899999999999999999999999999999
Q ss_pred hccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHH
Q 007504 309 VRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTAT 388 (601)
Q Consensus 309 ~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a 388 (601)
+|+|||+ ++.+|+||++||++|++|+||++.+++++++...+...+..... .++.....+.|..++++|+++++.+
T Consensus 358 ~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~as~aK~~~t~~a 433 (686)
T PLN02636 358 LRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK---THDDQLVADVHALSAGLKAYITSYT 433 (686)
T ss_pred cCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999997 55679999999999999999999999998887777665543321 2232233568999999999999999
Q ss_pred HHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHh-hhh
Q 007504 389 ADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL-MQC 467 (601)
Q Consensus 389 ~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 467 (601)
.+++++|+|+|||+||+.++++++++||+++.+|+||+|+++++++|+++++.+.+..++..+.++..||.+.... ...
T Consensus 434 ~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 513 (686)
T PLN02636 434 AKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVTWNYLRESMNTYLSQ 513 (686)
T ss_pred HHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999988776676666778898654321 111
Q ss_pred cCC----ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007504 468 HCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF---TNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQ 540 (601)
Q Consensus 468 ~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~---~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~ 540 (601)
+.. ..+..++.|+++++++|++|+.+++..++.++++. .+.+++||+++++++++|+||++++++++|++.|+
T Consensus 514 ~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~~~~~l~~~a~ah~~~~~~~~f~~~v~ 593 (686)
T PLN02636 514 PNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVE 593 (686)
T ss_pred cccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 12335689999999999999999999998888642 34578999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007504 541 QDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 600 (601)
Q Consensus 541 ~~~~~~~~~~vL~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~~ 600 (601)
+ +++++++++|++||.||+|+.|+++++||+++||+|++|++.|++.+.+||.+|||+.
T Consensus 594 ~-~~~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 652 (686)
T PLN02636 594 R-CPDRSTRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNVA 652 (686)
T ss_pred h-cCCHHHHHHHHHHHHHHhHHHHHHhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 7 7899999999999999999999999999999999999999999999999999999973
No 7
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=5e-97 Score=821.25 Aligned_cols=558 Identities=44% Similarity=0.700 Sum_probs=496.1
Q ss_pred chHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC-cccCCCHHHHHHHHHHHHHHHHHHHHHccCC-H
Q 007504 6 QLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD-NRAMLSRKELFKNTLRKAAYAWKRIIELRLS-E 83 (601)
Q Consensus 6 ~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 83 (601)
+|++||++++||+++|+.+|+|+++..+.++.+.+++.++|.|... .....+|++.++...+...+....+.++++. +
T Consensus 2 ~l~~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (610)
T cd01150 2 DLDKERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRELPSKHLSREELYEELKRKAKTDVERMGELMADDP 81 (610)
T ss_pred hhHHhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 8999999999999999999999898889999999999999999875 2346788888887777666666666777773 2
Q ss_pred HHHHHHh---hhcCC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCC
Q 007504 84 EEASMLR---SSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (601)
Q Consensus 84 ~~gg~~~---~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~ 158 (601)
....... ...+. +.++.+|+++|+++|..+||+||+++|||++.+|+++||||+|||+||||+.+++|||++|++
T Consensus 82 ~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~ 161 (610)
T cd01150 82 EKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPL 161 (610)
T ss_pred HHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCC
Confidence 2222111 11222 346788999999999999999999999999999999999999999999999999999999977
Q ss_pred CCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCcc
Q 007504 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD 238 (601)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~ 238 (601)
+++||||||+++|+||||+|++..|++++|+||+..+++++|+++|+||+||+++|.+.|||+++++++|+| +++.|
T Consensus 162 t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G---~~g~d 238 (610)
T cd01150 162 TQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMG---LNGVD 238 (610)
T ss_pred CCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccC---CCCCC
Confidence 799999999999999999995567999999999988788899999999999999999999999999999999 99999
Q ss_pred ceEEEecccccCcCccccccccccCCCceeccCc-chh---hHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccC
Q 007504 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PRQ---LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (601)
Q Consensus 239 ~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~-~~~---~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg 314 (601)
||.|.|||||||++++|+++++|+++|.|..+.. +.. .+...+..+|+.+++.++|++++|+++|++|+++|+|||
T Consensus 239 ng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg 318 (610)
T cd01150 239 NGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFG 318 (610)
T ss_pred eEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecC
Confidence 9999999999999999999999999999987544 321 345667788999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 007504 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (601)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~ 394 (601)
++++++|.||++||++|++|+|+++.+++++++..++...+.......+.++....++.|..++++|+++++.+.+++++
T Consensus 319 ~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~ 398 (610)
T cd01150 319 PKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQE 398 (610)
T ss_pred CCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98788999999999999999999999999999888887776655544444444445678999999999999999999999
Q ss_pred HHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHhhhhcCCcccc
Q 007504 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 474 (601)
Q Consensus 395 ~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 474 (601)
|+|+|||+||+.+++++++++|++..+|+||+|+++++++|+++++.+.+..+
T Consensus 399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~--------------------------- 451 (610)
T cd01150 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS--------------------------- 451 (610)
T ss_pred HHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC---------------------------
Confidence 99999999999999999999999999999999999999999999987754211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHH
Q 007504 475 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 550 (601)
Q Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~ 550 (601)
+++++++|++|+.+++..+++++.+ +.+..++||+++++++++|+||+++++++.|++.|++ +++++++.
T Consensus 452 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~~~a~Ah~~~~~~~~f~~~~~~-~~~~~~~~ 525 (610)
T cd01150 452 -----LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLRCAAKAHTEYTVLQRFHESVEE-IVDPSVRA 525 (610)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHH
Confidence 4567889999999999888877653 4567799999999999999999999999999999997 78999999
Q ss_pred HHHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 551 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 551 vL~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
||.+||.||+|+.|+++++||++++|+|++|++.|++.+.+||.+|||+
T Consensus 526 vL~~L~~Ly~l~~i~~~~g~fl~~~~ls~~~~~~~~~~~~~l~~~lrp~ 574 (610)
T cd01150 526 VLKRLCDLYALWLLEEHIADFLEGGFLGGQDVKAVREALLALLPQLRPD 574 (610)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997
No 8
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-61 Score=460.25 Aligned_cols=359 Identities=21% Similarity=0.285 Sum_probs=313.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcCC------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------ 95 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~~------ 95 (601)
.++||..+|++++.|+.++-.... ..+++...++ ..+.+|+.++++|+ |+++||.+.++++.
T Consensus 41 ~~~e~~~~r~sv~kF~qeelaP~a---~eidk~n~~~----~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE 113 (421)
T KOG0141|consen 41 LSDEQDQLRESVRKFFQEELAPHA---SEIDKANEFK----DLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEE 113 (421)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCcc----hHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHH
Confidence 468999999999999987543221 1122222221 24679999999887 57788877665321
Q ss_pred --------chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 96 --------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 96 --------~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
+..++.|.+++..-|.+.|++||+++|||++.+|+-+|+.|||||++|||+.++++.|+++ ++.||||
T Consensus 114 ~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yiLN-- 189 (421)
T KOG0141|consen 114 ISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYILN-- 189 (421)
T ss_pred HHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceec--CCcEEec--
Confidence 3457899999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccC--CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEec
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 245 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~--~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd 245 (601)
|.|+||+| |+.||.+||+|+++.. ...+|+++|||. +..||++..+.-+|+| |++++++++.|+
T Consensus 190 ---GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE-------kgm~GFs~~~KLdKlG---mrgsdTcELvFe 255 (421)
T KOG0141|consen 190 ---GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFE 255 (421)
T ss_pred ---CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc-------CCCcccccchhhHhhc---CCCCcchheehh
Confidence 99999999 9999999999999876 456999999999 8999999999999999 999999999999
Q ss_pred ccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccccc
Q 007504 246 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (601)
Q Consensus 246 ~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~ 325 (601)
|++||++++||. ++.++- .++..+...|+.+++..+|.++.+++.+..|+++|++||+ +|+
T Consensus 256 d~~vpas~ilg~------enkGvY------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk-------~ig 316 (421)
T KOG0141|consen 256 DCKVPASNILGE------ENKGVY------VLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGK-------KIG 316 (421)
T ss_pred hccCcHHHhcCc------CCceEE------EEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCC-------chh
Confidence 999999999995 444332 4456677899999999999999999999999999999999 999
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007504 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (601)
Q Consensus 326 ~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~ 405 (601)
+||.+|+++++|...+.+.|+.++.++..-+. +.. -...+++++.|+++.+..++-+|+|++||.||.
T Consensus 317 ~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-------g~~-----~~kdcag~il~aaE~~tqVald~iQ~~GGnGYi 384 (421)
T KOG0141|consen 317 HFQLLQGKLADMYTTLCASRSYVYNVARACDA-------GNV-----DPKDCAGVILYAAEKATQVALDAIQCLGGNGYI 384 (421)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC-----ChhhhhhhhhhHhhhhHHHHHHHHhhccCcccc
Confidence 99999999999999999999999988765542 221 123378999999999999999999999999999
Q ss_pred ccCChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 406 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 406 ~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
+++|.++++||++...|+.|++++.+..|+|.+.+.
T Consensus 385 neyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 385 NEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred cccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998753
No 9
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=469.21 Aligned_cols=342 Identities=23% Similarity=0.304 Sum_probs=300.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC--------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~-------- 94 (601)
+|++.++.+++++|..+. +.+.. ..++++..+ .+.+.+.+.++|+ |+++||.+..++.
T Consensus 38 ~E~e~~l~~tvrkfa~~~-i~Plv--~~mD~~~~~------~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEi 108 (398)
T KOG0139|consen 38 SETEQMLQKTVRKFAQEE-IKPLV--REMDRESRY------PASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEI 108 (398)
T ss_pred CcHHHHHHHHHHHHHHHh-cchHH--HhhhhhccC------CHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHH
Confidence 467889999999987653 21111 123333333 3446677788886 7899998776532
Q ss_pred ----C--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 95 ----E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 95 ----~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
. ++.+.+|+.|..++|..+||+|||++|+|.+ .|+.++|||++||+.|||+..+.|+|++| ||.|+||
T Consensus 109 sk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN--- 182 (398)
T KOG0139|consen 109 SKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN--- 182 (398)
T ss_pred hccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe---
Confidence 2 4456788889999999999999999888876 67889999999999999999999999988 8999999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+||+| +..|++++|||.++...+.+|+++|+|| ++.||++++...+|+| +|+++++.+.|+|||
T Consensus 183 --GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~-------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedVr 249 (398)
T KOG0139|consen 183 --GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP-------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDVR 249 (398)
T ss_pred --cceeeecC-CcccceEEEEEecChhhccCceeEEEee-------CCCCCcccCCcccccc---ccccceeeEEecccc
Confidence 99999999 8999999999999777788999999999 8899999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++||. .|.++. .....++.+|+.++|+++|.++.|++.++.|+++|.|||+ +|.+||
T Consensus 250 Vpks~IlGe------~G~Gyk------yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~Q 310 (398)
T KOG0139|consen 250 VPKSSILGE------YGKGYK------YAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDFQ 310 (398)
T ss_pred ccchhhccc------CCcchH------HHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhHH
Confidence 999999995 677776 6778899999999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+||++|++.+++|++|.++|+++++-++ + .....+++|+|.++++.|..++..|+|+.||.||+.++
T Consensus 311 ~iQhqiA~~~teiEaaRlL~ynaAr~k~~-------G-----~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~ 378 (398)
T KOG0139|consen 311 GLQHQIADMATEIEAARLLVYNAARMKDQ-------G-----LPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDF 378 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------C-----CchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999987653 1 23456689999999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchH
Q 007504 409 GLPELFAVYVPACTYEGDNI 428 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~ 428 (601)
|.+++|||++...||||+++
T Consensus 379 paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 379 PAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred cHHHHhhhceeeeeecCCCC
Confidence 99999999999999999863
No 10
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=8e-60 Score=449.87 Aligned_cols=359 Identities=21% Similarity=0.297 Sum_probs=309.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcCC-----
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~~----- 95 (601)
..+++|.++++.+++|..+.-+ +... .++....++ -.+.+.-.++|+ |+.+||.+.+.++.
T Consensus 27 ~L~e~qke~q~~A~kFa~~e~~-P~aa--e~Dk~ge~P------~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E 97 (408)
T KOG0140|consen 27 GLTEDQKEFQEAARKFAKDEMI-PNAA--EYDKSGEFP------WEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFE 97 (408)
T ss_pred CcchHHHHHHHHHHHHHHHhhc-cchh--hhcccCCCc------HHHHHHHHHcccCcccCccccCCCCchhHHHHHHHH
Confidence 4568999999999999866422 1111 112222222 122233346665 67778877655432
Q ss_pred ---------chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007504 96 ---------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (601)
Q Consensus 96 ---------~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 166 (601)
...+..| +|+.++|..+|++|||++||++++...++++||+||||+|||+.++.|+|++. ||+||||
T Consensus 98 ~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN- 173 (408)
T KOG0140|consen 98 ALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN- 173 (408)
T ss_pred HHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc-
Confidence 2223344 58999999999999999999999999999999999999999999999999987 9999999
Q ss_pred CCCCceeeccCCCCCCCcEEEEEEEEccC---CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEE
Q 007504 167 PTLTSSKWWPGGLGKVSTHAVVYARLITD---GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243 (601)
Q Consensus 167 p~~~G~K~~v~~~~~~Ad~~lV~A~~~~~---~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~ 243 (601)
|.|.||+| +.+|+|++|+||++++ +..+++..|+|+ .+.||++.+....++| .|..|+..|+
T Consensus 174 ----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe-------~dTpGlt~GkKE~nmG---qr~sdTR~it 238 (408)
T KOG0140|consen 174 ----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFIVE-------GDTPGLTRGKKEKNMG---QRCSDTRGIT 238 (408)
T ss_pred ----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEEEe-------CCCCCcCcChhhhccc---ccCCCCceee
Confidence 99999999 8999999999999886 345789999999 8999999999999999 9999999999
Q ss_pred ecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccc
Q 007504 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (601)
Q Consensus 244 fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~ 323 (601)
|+||+||.+|+|+. +|.++. +.++.++.+|..+++.++|.+.++++.+++|+.+|+|||. |
T Consensus 239 FEDvrVP~~Nvlg~------~G~GFk------vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~-------~ 299 (408)
T KOG0140|consen 239 FEDVRVPKENVLGA------PGAGFK------VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT-------P 299 (408)
T ss_pred eeecccchhccccC------CCccce------ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------C
Confidence 99999999999995 888877 7788999999999999999999999999999999999999 9
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007504 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (601)
Q Consensus 324 i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G 403 (601)
|.++|.+|..|++|...++.+|.+.+.+++.+|+ ++ ++ ...++++|.++++.+..++..++|++||.|
T Consensus 300 iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~-------~r----~~-sy~aSiAK~fA~D~an~~at~AvQifGG~G 367 (408)
T KOG0140|consen 300 IANHQAVQFMLADMAINLELARLMTRNAAWEVDN-------GR----RN-SYYASIAKLFATDTANQAATNAVQIFGGNG 367 (408)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----cc-hHHHHHHHHHhhhhHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999887752 11 23 667899999999999999999999999999
Q ss_pred ccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHH
Q 007504 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 443 (601)
Q Consensus 404 ~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~ 443 (601)
|..++|++.++||+++..||||+|+++|..|+|.||..+.
T Consensus 368 fn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 368 FNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred ccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998753
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.9e-53 Score=449.33 Aligned_cols=353 Identities=18% Similarity=0.175 Sum_probs=293.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++||.++++++++|+.++..... .+...+....+...+|+.+.++|| |+++||.+.++.+
T Consensus 4 ~~~eq~~l~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~ee 76 (378)
T TIGR03203 4 LSEEQRLLKESVEGLLKTSYDFDS-------RKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEA 76 (378)
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-------HHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHH
Confidence 357899999999999987533110 111111122244678999999998 5778876654321
Q ss_pred --C---chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007504 95 --E---PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (601)
Q Consensus 95 --~---~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 169 (601)
. +.|+..+..++...|..+|+++||++|||++++|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 77 l~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~---- 150 (378)
T TIGR03203 77 LGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID---- 150 (378)
T ss_pred HhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE----
Confidence 1 2343333334556788999999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 170 ~G~K~~v~~~~~~Ad~~lV~A~~~~~~-~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+||++ +..||+++|+|++..+. +..|+++|+|| .+.|||++.+.+.++| + ..+.|.||||+
T Consensus 151 -G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v~ 215 (378)
T TIGR03203 151 -GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-------AGAKGVTIKGYPTQDG---L---HAADITFTGVV 215 (378)
T ss_pred -eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE-------CCCCCceeccccccCC---C---ceeeEEECCCc
Confidence 99999999 89999999999975432 34689999999 7789999988777666 4 45899999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++|+. .|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 216 vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~Q 276 (378)
T TIGR03203 216 VGADAAIGD------PENALP------LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSFQ 276 (378)
T ss_pred ccHHhhcCC------cchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc-------cchhhH
Confidence 999999984 454443 5667788999999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+||+|++|.+.+++++++++.+++..+. + ...+....++++|+++++.+.++++.|+|+|||+||++++
T Consensus 277 ~vq~~lAdm~~~~e~ar~l~~~aa~~~~~--------~--~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~ 346 (378)
T TIGR03203 277 VLQHRAADMFVAVEQARSMAMFATMASDF--------D--DAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEA 346 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccc
Confidence 99999999999999999999998776531 0 0112345688999999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVAR 436 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~ 436 (601)
+++++|||++...+++|++++++.+++.
T Consensus 347 ~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 347 KIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999987
No 12
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-50 Score=451.53 Aligned_cols=503 Identities=15% Similarity=0.139 Sum_probs=353.0
Q ss_pred HhccCCCCHHHHHHHHc--CChhhHHHHHH-HHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----
Q 007504 10 ERKKAQFDVDEMKIVWA--GSRHAFQVSDR-IARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL----- 81 (601)
Q Consensus 10 ~r~~~~f~~~~~~~~~~--~~~e~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----- 81 (601)
+=-.-.+|++.+-.+-+ -++|+.++++. +++++..-..+.. . ........++|+.+.+.||
T Consensus 60 ~lF~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~~~~~~--------~---~~~~~~P~e~w~~L~e~G~~gl~I 128 (777)
T PRK09463 60 ELFSGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMVNDWQI--------T---HELADLPPEVWQFIKEHGFFGMII 128 (777)
T ss_pred hhcCCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------h---ccccCCCHHHHHHHHHCCCCcCCC
Confidence 33455678887743333 26788888886 6666542111000 0 0001233568999999997
Q ss_pred CHHHHHHHhhhcC------------Cc--hhhHhhhhchH-HHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCC
Q 007504 82 SEEEASMLRSSVD------------EP--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNV 146 (601)
Q Consensus 82 ~~~~gg~~~~~~~------------~~--~~~~~~~~l~~-~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~ 146 (601)
|+++||.+.+... .+ ..+.+|.++.. ..|..+||+|||++|||++++|+.++||++|||++|||+
T Consensus 129 PeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDa 208 (777)
T PRK09463 129 PKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDA 208 (777)
T ss_pred chhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCc
Confidence 6788887644321 11 12345554553 478899999999999999999999999999999999999
Q ss_pred CCCceEEEE---eCCCC---eEEEecCCCCceeeccCCCCCCCcEEEEEEEEcc-C-----CCCCceEEEEEeeccCCCC
Q 007504 147 QGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT-D-----GQDHGVNGFIVQLRSLEDH 214 (601)
Q Consensus 147 ~~~~TtA~~---d~~~~---~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~-~-----~~~~G~~~flV~~r~~~~~ 214 (601)
.++.|+++. +.+++ +|+|| |+|.||++ +..||+++|++++.. + +++.|+++|+||
T Consensus 209 a~i~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp------- 275 (777)
T PRK09463 209 GSIPDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIP------- 275 (777)
T ss_pred ccccccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEE-------
Confidence 999876542 12255 69999 99999999 899999999998632 2 235789999999
Q ss_pred CCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHH-HHhHHHHH
Q 007504 215 SPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADAS 293 (601)
Q Consensus 215 ~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r-~~~~a~~~ 293 (601)
.+.|||++++.+.++| ++ ..++.+.|+||+||.+++||.. ...|.++. .+...+..+| +.+++.++
T Consensus 276 ~d~pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG~~---~~~G~G~~------~l~~~L~~gR~i~laA~av 342 (777)
T PRK09463 276 TDTPGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIGGP---KMAGQGWR------MLMECLSVGRGISLPSNST 342 (777)
T ss_pred CCCCCeEecccccccC---cc-cccceEEeeeeecCHHHhcccc---cccChHHH------HHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999 87 5689999999999999999841 01255554 6678889999 89999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhH
Q 007504 294 CALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEA 373 (601)
Q Consensus 294 g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (601)
|++++|++.+++|+++|+|||+ ||++||.+|++|++|.+.+|+++++.+.+++.++. +. ..
T Consensus 343 G~ar~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~-------G~-----~~ 403 (777)
T PRK09463 343 GGAKLAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDL-------GE-----KP 403 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----Cc
Confidence 9999999999999999999999 99999999999999999999888888777655531 11 12
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhhhccccccccccCcchHHHHHHH--H-------HHHHHHH
Q 007504 374 HACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV--A-------RFLMKTV 442 (601)
Q Consensus 374 ~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~--~~l~~~~rd~~~~~~~~G~~~vl~~~i--a-------~~ll~~~ 442 (601)
...++++|+++++.+.+++++|+|+|||+||+.+ ++++++|||++...|+||+|++++..+ + -++++..
T Consensus 404 ~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~iifgqga~r~hp~~~~~~ 483 (777)
T PRK09463 404 SVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLMIFGQGAIRCHPYVLKEM 483 (777)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHHHcCCcchhcCHHHHHHH
Confidence 4568899999999999999999999999999997 899999999999999999999999987 0 1233333
Q ss_pred HhhcCC---------CCCccccccccc-hhHhhhhcCCccc-cCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHhcCChh
Q 007504 443 SQLGYG---------NMPVGTTTYMGR-AEQLMQCHCGVQK-AEDWLNPS--AILEAFEARAIRMSVACAQNLSKFTNQE 509 (601)
Q Consensus 443 ~~~~~~---------~~~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~r~~~~~~~~~~~l~~~~~~~ 509 (601)
..+... ++|.+...|+-+ ...-......... .....++. -..+.+.+.+..+...+-.-|. ..+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~d~~l~---~~g 560 (777)
T PRK09463 484 EAAQNNDKQALKAFDKALFGHIGFVVSNAVRSFWLGLTGGRLSAAPVDDATKRYYRQLNRLSANLALLADVSML---VLG 560 (777)
T ss_pred HHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 222111 122222222211 0000000000000 00112332 1112122222221111111111 123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhHHHHHhhhhHHH
Q 007504 510 EGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFV 572 (601)
Q Consensus 510 ~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~vL~~l~~L~al~~i~~~~~~fl 572 (601)
......+..+.+++++.+++|++.+-+.+.+. ...+.-...|...+.-++++++++....++
T Consensus 561 ~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 622 (777)
T PRK09463 561 GSLKRRERLSARLGDILSQLYLASAVLKRYED-EGRPEADLPLVHWAVQDALYQAEQALDGLL 622 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788999999999999998888875 333333357888889999999999775544
No 13
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=3.3e-50 Score=431.32 Aligned_cols=366 Identities=20% Similarity=0.243 Sum_probs=304.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhh
Q 007504 18 VDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS 92 (601)
Q Consensus 18 ~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~ 92 (601)
|+.|+. +.++++.++++.+++|+++...... .++. .....++|+.+.+.|| |+++||.+.+.
T Consensus 20 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~-----~d~~------~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~ 86 (409)
T cd01161 20 PSVLTE--EQTEELNMLVGPVEKFFEEVNDPAK-----NDQL------EKIPRKTLTQLKELGLFGLQVPEEYGGLGLNN 86 (409)
T ss_pred ccccCc--cCCHHHHHHHHHHHHHHHHhCCchh-----hccc------cCCCHHHHHHHHhCCCCCCCCChhhCCCCCCH
Confidence 344444 3357889999999999987533211 0111 1133568999999997 67777765432
Q ss_pred c---------C--Cc--hhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCC
Q 007504 93 V---------D--EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQT 159 (601)
Q Consensus 93 ~---------~--~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~ 159 (601)
. + .+ .++.+|..+....+..+|+++|+++|+|++.+|+.++|+++|||++|||...++|+|++++++
T Consensus 87 ~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g 166 (409)
T cd01161 87 TQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDG 166 (409)
T ss_pred HHHHHHHHHHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCC
Confidence 1 1 11 123456555555678899999999999999999999999999999999999999999997667
Q ss_pred CeEEEecCCCCceeeccCCCCCCCcEEEEEEEEcc---CC-CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCC
Q 007504 160 DEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT---DG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 235 (601)
Q Consensus 160 ~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~---~~-~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~ 235 (601)
++|+|| |+|+|++| +..||+++|.|++.. ++ ...++++|+|| .+.|||++.+.|+++| ++
T Consensus 167 ~g~~l~-----G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp-------~~~~gv~~~~~~~~~G---~~ 230 (409)
T cd01161 167 KHYVLN-----GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVE-------RSFGGVTNGPPEKKMG---IK 230 (409)
T ss_pred CEEEEE-----eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEe-------CCCCCcccCCcccccC---CC
Confidence 789999 99999999 889999999999752 22 13578899999 7789999999999999 99
Q ss_pred CccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007504 236 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 315 (601)
Q Consensus 236 ~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~ 315 (601)
+++++.|.|+||+||++++++. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 231 g~~s~~v~~~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~ 298 (409)
T cd01161 231 GSNTAEVYFEDVKIPVENVLGE------VGDGFK------VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK 298 (409)
T ss_pred CCCceEEEeccEEECHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc
Confidence 9999999999999999999984 454433 4556778899999999999999999999999999999999
Q ss_pred CCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHH
Q 007504 316 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 395 (601)
Q Consensus 316 ~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~ 395 (601)
||.+||.+|++|+++.+.+++++.+++.+++.+++ .. ..+....++++|+++++.+.++++.|
T Consensus 299 -------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~-------~~---~~~~~~~~~~aK~~a~~~a~~v~~~a 361 (409)
T cd01161 299 -------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDR-------GL---KAEYQIEAAISKVFASEAAWLVVDEA 361 (409)
T ss_pred -------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC---CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876652 11 11345568999999999999999999
Q ss_pred HHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 396 RKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 396 ~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
+|+|||+||+.++++++++||++...+++|++++++.+|++.+|++
T Consensus 362 ~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 362 IQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999864
No 14
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=8e-50 Score=423.93 Aligned_cols=354 Identities=24% Similarity=0.308 Sum_probs=297.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc---------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~--------- 93 (601)
+|+|.++++.+++|+.++..... ..++...++..++|+.+.+.|| |+++||.+.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 72 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHA---------ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEAL 72 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---------hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHH
Confidence 46788999999999977432111 0111122234668999999997 677887654331
Q ss_pred ---CCch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 94 ---DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 94 ---~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
+.+. .+.+|. +++..+..+|+++|+++|+|++.+|+.++++++|||++|||...+.|+|+++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~--- 146 (375)
T cd01162 73 STGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN--- 146 (375)
T ss_pred HhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE---
Confidence 1122 233443 5666788899999999999999999999999999999999999999999998 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+||+| +..||+++|+|++..+ ...++++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 147 --G~k~~vs~-~~~ad~~~v~a~~~~~-~~~~~~~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~ 212 (375)
T cd01162 147 --GSKAFISG-AGDSDVYVVMARTGGE-GPKGISCFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCR 212 (375)
T ss_pred --EEEEEecC-CCCCCEEEEEEEecCC-CCCceEEEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceE
Confidence 99999999 8999999999997543 23578999999 7789999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++|+. +|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||. ||++||
T Consensus 213 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~ 273 (375)
T cd01162 213 VPVENRLGG------EGQGFG------IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQ 273 (375)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhH
Confidence 999999984 454443 3445677889999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|+++++|.+.+++++.+++.+++.+++ +. ++....++++|+++++.+.++++.++|+|||+||+.++
T Consensus 274 ~vq~~la~~~~~l~~a~~~~~~a~~~~~~-------~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~ 342 (375)
T cd01162 274 ALQFKLADMATELVASRLMVRRAASALDR-------GD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDY 342 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 99999999999999999999998876652 11 12234578899999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
++++++||++...+++|++++++.++++.+++
T Consensus 343 ~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 343 PVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred hHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998875
No 15
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.3e-49 Score=423.76 Aligned_cols=352 Identities=22% Similarity=0.250 Sum_probs=296.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHhhhcC--------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~gg~~~~~~~-------- 94 (601)
-++||.++++.+++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l 83 (386)
T cd01151 13 LTEEERAIRDTAREFCQEELAPRV---------LEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREV 83 (386)
T ss_pred CCHHHHHHHHHHHHHHHHhcCccH---------HHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHH
Confidence 357899999999999977422110 0111111234578999998886 6777776543321
Q ss_pred ----Cc--hhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 95 ----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 95 ----~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
.+ .++.+|..++..+|..+|+++|+++|+|++.+|++++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 158 (386)
T cd01151 84 ERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN--- 158 (386)
T ss_pred HhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE---
Confidence 12 234455556666788999999999999999999999999999999999999999999998 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|.|+++ +..||+++|+|++.. +.++++|+|| ...|||++.+.|+++| +++++++.+.|+||+
T Consensus 159 --G~K~~is~-~~~Ad~~lv~ar~~~---~~~~~~flVp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v~ 222 (386)
T cd01151 159 --GSKTWITN-SPIADVFVVWARNDE---TGKIRGFILE-------RGMKGLSAPKIQGKFS---LRASITGEIVMDNVF 222 (386)
T ss_pred --EEEEeecC-CCcCCEEEEEEEECC---CCcEEEEEEc-------CCCCCeecCCCCCCcC---CCCCceeEEEEccEE
Confidence 99999999 899999999999753 2468899999 7789999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++++. +.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|
T Consensus 223 Vp~~~~l~~-------~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q 282 (386)
T cd01151 223 VPEENLLPG-------AEGLR------GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-------PLAAFQ 282 (386)
T ss_pred eCHHHcCCc-------cccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC-------chhhhH
Confidence 999999973 22222 3455677889999999999999999999999999999998 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|++|++|.+.+++++.+++.+++.+++ +. .....++++|.++++.+.++++.++|+|||+||+.++
T Consensus 283 ~vq~~la~~~~~~eaar~l~~~a~~~~d~-------~~-----~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 350 (386)
T cd01151 283 LVQKKLADMLTEIALGLLACLRVGRLKDQ-------GK-----ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEY 350 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence 99999999999999999999998776652 11 1123468899999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++|||++...+++|++++++..+++.+|+
T Consensus 351 ~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 351 HIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999875
No 16
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-48 Score=433.88 Aligned_cols=319 Identities=20% Similarity=0.183 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHccC-----CHHHHHHHhhhcC------------C--chhhHhhhhch-HHHHccCCCHHHHHhhHHHHh
Q 007504 68 KAAYAWKRIIELRL-----SEEEASMLRSSVD------------E--PAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLAY 127 (601)
Q Consensus 68 ~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------------~--~~~~~~~~~l~-~~~i~~~Gt~eq~~~~l~~l~ 127 (601)
+..++|+.+++.|| |+++||.+.+... . +..+.+|.++. +.+|..+||+|||++|||+++
T Consensus 109 ~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LA 188 (774)
T PRK13026 109 LPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLA 188 (774)
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHh
Confidence 34578999999997 6888887644321 1 12234454454 357889999999999999999
Q ss_pred cccceeEEeccCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCceeeccCCCCCCCcEEEEEEEEc-cC-----
Q 007504 128 KMEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI-TD----- 195 (601)
Q Consensus 128 ~g~~~~~~a~tE~~~Gsd~~~~~TtA~~---d~~~~---~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~-~~----- 195 (601)
+|+.++||++|||++|||+.++.|+|+. +.+++ +|+|| |+|.||++ +..||+++|++++. .+
T Consensus 189 sGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 189 DGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred CCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCccccccC
Confidence 9999999999999999999999987653 12355 69999 99999999 89999998888753 22
Q ss_pred CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchh
Q 007504 196 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQ 275 (601)
Q Consensus 196 ~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~ 275 (601)
+++.|+++|+|| .+.|||++++.++++| +++ .++.+.||||+||.+++||.. +..|.++.
T Consensus 263 ~~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~-~~g~v~fdDV~VP~d~lLG~~---~~~G~G~~------ 322 (774)
T PRK13026 263 KKELGITCALIP-------TDHPGVEIGRRHNPLG---MAF-MNGTTRGKDVFIPLDWIIGGP---DYAGRGWR------ 322 (774)
T ss_pred CCCCceEEEEEE-------CCCCCeEeeccccccc---cCc-ccceEEEeeeEccHHHhcCCc---ccCChHHH------
Confidence 235789999999 7889999999999999 876 468999999999999999851 01366665
Q ss_pred hHHhHHHHHH-HHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHH---HHHHHHHHHHHH
Q 007504 276 LLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEWL 351 (601)
Q Consensus 276 ~~~~~l~~~r-~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a---~~~a~~~~~~~~ 351 (601)
.+...+..+| +.+++.++|++++|++.+++|+++|+|||+ ||++||.+||+|++|.+ .+++++.+++.+
T Consensus 323 ~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a 395 (774)
T PRK13026 323 MLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTG 395 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999 899999999999999999999999999999 99999999999999998 567777776654
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhhhccccccccccCcchHH
Q 007504 352 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIV 429 (601)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~--~~l~~~~rd~~~~~~~~G~~~v 429 (601)
. + .+. .....++++|+++++.+.+++++|+|+|||.||+++ ++++++|||++...|++|+|++
T Consensus 396 ~---D-------~G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei 460 (774)
T PRK13026 396 L---D-------LGV-----KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANIL 460 (774)
T ss_pred H---H-------CCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHH
Confidence 2 1 111 124568999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHH
Q 007504 430 LLLQV 434 (601)
Q Consensus 430 l~~~i 434 (601)
++..+
T Consensus 461 ~R~l~ 465 (774)
T PRK13026 461 TRNLM 465 (774)
T ss_pred HHHHH
Confidence 99743
No 17
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-49 Score=405.92 Aligned_cols=470 Identities=21% Similarity=0.243 Sum_probs=356.7
Q ss_pred HHHHHHHHHccC-----CHHHHHHHhhh-----c-------CC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhccc
Q 007504 70 AYAWKRIIELRL-----SEEEASMLRSS-----V-------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (601)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~gg~~~~~-----~-------~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (601)
...|+.++++|+ |++++|.+... + +. +..+..|.++....|..+||++||++|||.+++|+
T Consensus 112 ~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~ 191 (634)
T KOG0137|consen 112 ETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGK 191 (634)
T ss_pred hhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCC
Confidence 345667777775 56666655332 1 11 22334565567778999999999999999999999
Q ss_pred ceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCC----CCCceEEEEE
Q 007504 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFIV 206 (601)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~----~~~G~~~flV 206 (601)
.+++||+|||..|||..++.|+|+..++++.|+|| |.|.||+| +..||+++|||++..++ ..+++++|||
T Consensus 192 ~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Flv 265 (634)
T KOG0137|consen 192 LIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFLV 265 (634)
T ss_pred ccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEEE
Confidence 99999999999999999999999999999999999 99999999 89999999999987543 2378999999
Q ss_pred eeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHH
Q 007504 207 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 286 (601)
Q Consensus 207 ~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~ 286 (601)
+ .+.-||+-++...|+| .++++++.|.|++|.||.+|+||. +|.+.. .....++.+|+
T Consensus 266 e-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG~------~G~G~k------va~nilnsgR~ 323 (634)
T KOG0137|consen 266 E-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLGK------PGDGFK------VAMNILNSGRF 323 (634)
T ss_pred e-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcCC------CCcchH------HHHHHHccCCc
Confidence 9 6788999999999999 999999999999999999999995 788776 77788889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007504 287 TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (601)
Q Consensus 287 ~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (601)
.+++..+|.+++++..+.+|+..|.|||. ++.+|..+|.+++.|...+|+++++.+..+..+|+
T Consensus 324 ~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~--------- 387 (634)
T KOG0137|consen 324 GMAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE--------- 387 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc---------
Confidence 99999999999999999999999999999 99999999999999999999999999987766543
Q ss_pred CCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhc
Q 007504 367 FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLG 446 (601)
Q Consensus 367 ~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~ 446 (601)
....+.+..+++.|.|+++.++.++++++|++||+||+.+.++++.+||++.++|+||+|++++..||..-+...++..
T Consensus 388 -~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q~ag~~l 466 (634)
T KOG0137|consen 388 -VGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQHAGKHL 466 (634)
T ss_pred -ccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHHhhhHHH
Confidence 1235678889999999999999999999999999999999999999999999999999999999999986655443211
Q ss_pred -------CCCCC--cc-ccccccchhHhhhhcCCccccCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHhcCChhhhHHH
Q 007504 447 -------YGNMP--VG-TTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEA--FEARAIRMSVACAQNLSKFTNQEEGFAE 514 (601)
Q Consensus 447 -------~~~~~--~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~l~~~~~~~~~~n~ 514 (601)
+..+| .+ +..-+. ...... .........||+....+ ++.-.. +...+.+++-. +++....+
T Consensus 467 ~~~~r~~kn~n~gli~~~~~~~~---~~~g~~-~~~~ls~hvhpsL~~saq~~e~~~~-~~~~~Ve~ll~--k~~k~iv~ 539 (634)
T KOG0137|consen 467 ATGVRALKNANPGLIGGKVSRLR---SLRGPG-TGLYLSEHVHPSLQDSAQKLESSLA-RFQQVVEKLLT--KHGKGIVE 539 (634)
T ss_pred HHHHHHhhcCCcchhcchhhhhh---hccCCC-cccccccccCHHHHHHHHHHHHHHH-HHHHHHHHHHH--HhccchhH
Confidence 10111 00 000011 111000 00123345677765542 222211 12222222211 23344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCChHHHHHHHHHHHhHHHHHhhhhHHHhcCCCC-HHHHHHHHHHH
Q 007504 515 LAADLVEAAVAHCQLIVVSKFIEKLQQDI----PGKGVKPILEILCHIYALHLVHKHLGDFVSTGCIT-AKQASLANEQL 589 (601)
Q Consensus 515 ~~~~l~~la~a~~~~~~~~~f~~~v~~~~----~~~~~~~vL~~l~~L~al~~i~~~~~~fl~~~~ls-~~~~~~l~~~~ 589 (601)
.+..+.++|.+-+..|.+..-+++.+++. +..+....+....+.-+-.+..+........+..+ ..++..+.+++
T Consensus 540 ~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~~~~~~d~~i~~~sk~v 619 (634)
T KOG0137|consen 540 EQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSGHVVNLDRNIVSLSKTV 619 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcHHHHHHHHHH
Confidence 67778999999999999999999988752 34444445554455555555555554444443445 34466666666
Q ss_pred HH
Q 007504 590 RS 591 (601)
Q Consensus 590 ~~ 591 (601)
.+
T Consensus 620 ~e 621 (634)
T KOG0137|consen 620 LE 621 (634)
T ss_pred Hh
Confidence 54
No 18
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.9e-49 Score=420.85 Aligned_cols=352 Identities=23% Similarity=0.294 Sum_probs=295.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC---------
Q 007504 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (601)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~--------- 94 (601)
+||.++++.+++|+.+... .. ....+....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~--~~-------~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la 71 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVA--PF-------HHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELA 71 (372)
T ss_pred ChHHHHHHHHHHHHHHhCc--hh-------HHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
Confidence 4678999999999987421 10 11112222244668999999998 6778876543321
Q ss_pred ---Cch-hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 007504 95 ---EPA-FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (601)
Q Consensus 95 ---~~~-~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~ 170 (601)
.+. .+.+|..++...+..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++ +++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~----- 144 (372)
T cd01160 72 RAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN----- 144 (372)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----
Confidence 122 23456556777889999999999999999999999999999999999999999999998 7899999
Q ss_pred ceeeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccccc
Q 007504 171 SSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (601)
Q Consensus 171 G~K~~v~~~~~~Ad~~lV~A~~~~~-~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~V 249 (601)
|+|.||+| +..||+++|+|++..+ +.+.++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 145 G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~V 213 (372)
T cd01160 145 GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE-------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRV 213 (372)
T ss_pred eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeecCCcccccc---CCCCCeEEEEecceEc
Confidence 99999999 8999999999998654 234689999999 6789999999999999 9999999999999999
Q ss_pred CcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHH
Q 007504 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (601)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (601)
|.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~ 274 (372)
T cd01160 214 PAENLLGE------ENKGFY------YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQV 274 (372)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHH
Confidence 99999985 443332 3445677889999999999999999999999999999998 9999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007504 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (601)
Q Consensus 330 ~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 409 (601)
+|++|+++.+.+++++.+++.+++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 275 vq~~la~~~~~~~~a~~~~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~ 342 (372)
T cd01160 275 VRHKIAELATKVAVTRAFLDNCAWRHEQ-------GR-----LDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYP 342 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCH
Confidence 9999999999999999999888765541 11 11345778999999999999999999999999999999
Q ss_pred hhhhccccccccccCcchHHHHHHHHHHH
Q 007504 410 LPELFAVYVPACTYEGDNIVLLLQVARFL 438 (601)
Q Consensus 410 l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 438 (601)
++++|||++...+++|++++++.+|++.+
T Consensus 343 l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 343 IARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999875
No 19
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.3e-49 Score=419.64 Aligned_cols=358 Identities=18% Similarity=0.151 Sum_probs=294.8
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++||.++++++++|++++..-+. ....+....+..++|+.+.+.|| |+++||.+.++..
T Consensus 5 ~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~ 76 (380)
T PRK03354 5 LNDEQELFVAGIRELMASENWEAY--------FAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWME 76 (380)
T ss_pred CCHHHHHHHHHHHHHHHhccCChh--------HHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHH
Confidence 457899999999999987532110 01122222244678999999998 6778886644321
Q ss_pred -----CchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007504 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (601)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 169 (601)
.+.++..+.......|..+|+++|+++|||++.+|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 77 la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln---- 150 (380)
T PRK03354 77 LGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN---- 150 (380)
T ss_pred HHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe----
Confidence 12222222212345788899999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccccc
Q 007504 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (601)
Q Consensus 170 ~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~V 249 (601)
|+|+|+++ +.+||+++|+|++..+.+..++.+|+|| .+.|||++. .|+++| +++++++.|.||||+|
T Consensus 151 -G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~V 217 (380)
T PRK03354 151 -GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-------MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVEL 217 (380)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE-------CCCCceEec-cccccC---CCCCCeEEEEEccEEe
Confidence 99999999 8999999999997533333567889999 678999997 589999 9999999999999999
Q ss_pred CcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHH
Q 007504 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (601)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (601)
|.+++++. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.
T Consensus 218 p~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~ 278 (380)
T PRK03354 218 DEKDMFGR------EGNGFN------RVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQL 278 (380)
T ss_pred cHHHcCCC------CChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhHH
Confidence 99999984 454432 2334556788899999999999999999999999999999 9999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007504 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (601)
Q Consensus 330 ~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 409 (601)
+|++|++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 279 vq~~la~~~~~~~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 346 (380)
T PRK03354 279 IQEKFAHMAIKLNSMKNMLYEAAWKADN-------GT-----ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHR 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCh
Confidence 9999999999999999999988765541 11 11234678999999999999999999999999999999
Q ss_pred hhhhccccccccccCcchHHHHHHHHHHHHHHH
Q 007504 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (601)
Q Consensus 410 l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 442 (601)
++++|||++...+++|++++++..+++.+++.+
T Consensus 347 l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 347 ISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998764
No 20
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.8e-49 Score=420.39 Aligned_cols=355 Identities=21% Similarity=0.295 Sum_probs=294.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC--------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~-------- 94 (601)
++||.++++++++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.+..+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~---------~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l 72 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVA---------AEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEEL 72 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccch---------HHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987532111 0111111234578999999998 6788886544321
Q ss_pred ----CchhhHhh-hhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007504 95 ----EPAFTDLH-WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (601)
Q Consensus 95 ----~~~~~~~~-~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 169 (601)
.+.++.++ ..+....+..+|+++||++|||++.+|++++++++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~---- 146 (378)
T cd01157 73 AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN---- 146 (378)
T ss_pred HhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe----
Confidence 12222222 134444566789999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEccCCC---CCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 170 TSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 170 ~G~K~~v~~~~~~Ad~~lV~A~~~~~~~---~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|+|+++ +..||+++|+|++..++. ..++.+|+|| .+.|||++.+.|.++| +++++++.+.|||
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~ 214 (378)
T cd01157 147 -GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFIVE-------ADTPGIQPGRKELNMG---QRCSDTRGITFED 214 (378)
T ss_pred -eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEEEc-------CCCCCeeccCcccccC---CCCCCceEEEecc
Confidence 99999999 899999999999764321 3578899999 7789999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 215 v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~ 275 (378)
T cd01157 215 VRVPKENVLIG------EGAGFK------IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAE 275 (378)
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHH
Confidence 99999999984 444433 4455667789999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+||++++|.+.+++++.+++.+++.++. +. .....++++|+++++.+.++++.|+|+|||+||++
T Consensus 276 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 343 (378)
T cd01157 276 HQAVSFMLADMAMKVELARLAYQRAAWEVDS-------GR-----RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNS 343 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 9999999999999999999999998776541 11 12335678999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++++|||++...+++|++++++..|++.++.
T Consensus 344 ~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 344 EYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred CCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998864
No 21
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=5e-49 Score=421.94 Aligned_cols=365 Identities=22% Similarity=0.290 Sum_probs=300.9
Q ss_pred CCCHHHHHHH-HcC--ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHHHH
Q 007504 15 QFDVDEMKIV-WAG--SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEAS 87 (601)
Q Consensus 15 ~f~~~~~~~~-~~~--~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~gg 87 (601)
-|.+.-|+.. ++. ++||.++++.+++|+.++..... + +. .....+..++|+.+.++||. +++||
T Consensus 14 ~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~-------~-~~-~~~~~~p~~~~~~l~~~G~~~~~v~~~GG 84 (412)
T PLN02526 14 IFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIM-------T-EY-WEKAEFPFHIIPKLGSLGIAGGTIKGYGC 84 (412)
T ss_pred CCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccch-------H-HH-HHhCCCCHHHHHHHHHCCCCcCcccccCC
Confidence 3556555444 433 58899999999999987432110 0 11 11122345789999999985 45676
Q ss_pred HHhhhcC------------Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEE
Q 007504 88 MLRSSVD------------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153 (601)
Q Consensus 88 ~~~~~~~------------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA 153 (601)
.+.++.+ .+. .+..|..++...|..+|+++|+++|+|++++|++++|+++|||++|||+.++.|+|
T Consensus 85 ~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a 164 (412)
T PLN02526 85 PGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTA 164 (412)
T ss_pred CCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEE
Confidence 5543311 121 23446556666799999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCC
Q 007504 154 TFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233 (601)
Q Consensus 154 ~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~ 233 (601)
+++ +|+|+|| |+|+||+| +..||+++|+|++.. +.++++|+|| .+.|||++.+.|+++|
T Consensus 165 ~~~--~gg~~ln-----G~K~~vs~-~~~Ad~~lv~a~~~~---~~~~~~flV~-------~~~~Gv~~~~~~~~~G--- 223 (412)
T PLN02526 165 TKV--EGGWILN-----GQKRWIGN-STFADVLVIFARNTT---TNQINGFIVK-------KGAPGLKATKIENKIG--- 223 (412)
T ss_pred EEE--CCEEEEE-----EEEeeecC-CCccCEEEEEEEeCC---CCCeEEEEEc-------CCCCCeEcCCCCCccC---
Confidence 998 7899999 99999999 899999999999753 2368899999 7789999999999999
Q ss_pred CCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007504 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313 (601)
Q Consensus 234 ~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qf 313 (601)
+++++++.|.|+||+||++++|+. .+ .+. .....+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus 224 ~r~t~s~~v~f~~v~Vp~~~~l~~------~~-~~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~f 290 (412)
T PLN02526 224 LRMVQNGDIVLKDVFVPDEDRLPG------VN-SFQ------DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 290 (412)
T ss_pred cCCCCeeEEEEeeEEECHHHhCCC------cc-cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeC
Confidence 999999999999999999999963 21 111 33456778999999999999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHH
Q 007504 314 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 393 (601)
Q Consensus 314 g~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~ 393 (601)
|+ ||++||.+||++++|.+.+++++.+++++++.++. +.. ....++++|+++++.+.++++
T Consensus 291 g~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-------~~~-----~~~~~~~aK~~a~~~a~~v~~ 351 (412)
T PLN02526 291 GA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYES-------GKM-----TPGHASLGKAWITKKARETVA 351 (412)
T ss_pred CC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC-----ChHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999998876652 111 123477899999999999999
Q ss_pred HHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 394 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 394 ~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
.|+|+|||+||+++++++++|||++...+++|++++++..+++.+++.
T Consensus 352 ~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 352 LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999763
No 22
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-48 Score=415.67 Aligned_cols=356 Identities=17% Similarity=0.152 Sum_probs=295.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++|+.+++++++.|+.+...-+ .....+....+..++|+.+.+.|| |+++||.+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~ 76 (381)
T PRK12341 5 LTEEQELLLASIRELITRNFPEE--------YFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEE 76 (381)
T ss_pred CCHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHH
Confidence 35788899999999997642100 011122222344678999999997 6778877654321
Q ss_pred -----CchhhHhhhhchHHHHccCCCHHHHHhhHHHH-hcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l-~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
.+. ..++..+....|..+|+++||++|+|++ .+|+.++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 77 la~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln--- 150 (381)
T PRK12341 77 VSKCGAPA-FLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN--- 150 (381)
T ss_pred HhhcChhH-HHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE---
Confidence 122 2223335566788899999999999998 599999999999999999999999999987 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCC-CCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~-~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+|+|| +..||+++|+|++..++. ..++.+|+|| .+.|||++. .|+++| +++++++.|.|+||
T Consensus 151 --G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~v 216 (381)
T PRK12341 151 --GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDNV 216 (381)
T ss_pred --eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEe-------CCCCceeec-cccccc---CCCCCceEEEECcE
Confidence 99999999 899999999999764432 3578999999 778999995 589999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||.++
T Consensus 217 ~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~ 277 (381)
T PRK12341 217 EVEESDLVGE------EGMGFL------NVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGHN 277 (381)
T ss_pred EecHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHHh
Confidence 9999999984 444432 3344677889999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+|++|+++.+.+++++.+++.+++.+++ +. .....++++|+++++.+.++++.++|+|||+||..+
T Consensus 278 ~~v~~~la~~~~~~~aar~~~~~a~~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~ 345 (381)
T PRK12341 278 QLIQEKLTLMAIKIENMRNMVYKVAWQADN-------GQ-----SLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDE 345 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999999999988765542 11 123457889999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
++++++|||++...+++|++++++..+++.+++.
T Consensus 346 ~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 346 ARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred CHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999864
No 23
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1e-48 Score=415.86 Aligned_cols=355 Identities=21% Similarity=0.267 Sum_probs=298.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc---------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~--------- 93 (601)
++|+.++++++++|+.+...... ...+........+|+.+.+.|| |+++||.+.++.
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l 73 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLA---------AKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEI 73 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987432110 1111111234568999999998 577887654331
Q ss_pred ---CCchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 94 ---DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 94 ---~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
+.+.+ +..|..++...|..+|+++|+++|+|++.+|++++++++|||++|||+..++|+|+++ +++|+||
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~--- 148 (376)
T cd01156 74 SRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN--- 148 (376)
T ss_pred hccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE---
Confidence 11222 3345556667889999999999999999999999999999999999999999999988 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+|++| +..||+++|+|++..+++..++.+|+|| ...|||++.+.|+++| +++++++.|.|+||+
T Consensus 149 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~ 215 (376)
T cd01156 149 --GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE-------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCE 215 (376)
T ss_pred --EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---CCCCCceEEEeCceE
Confidence 99999999 8999999999997655445678999999 7789999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||++++|+. .+.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 216 Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~ 276 (376)
T cd01156 216 VPEENILGG------ENKGVY------VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQ 276 (376)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhH
Confidence 999999984 344332 4456777899999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|+++++|.+.+++++.+++.+++.+++ +. . ....++.+|.++++.+.++++.++|+|||+||+.++
T Consensus 277 ~v~~~la~~~~~l~aar~~~~~aa~~~d~-------~~-~----~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 344 (376)
T cd01156 277 LVQGKLADMYTRLNASRSYLYTVAKACDR-------GN-M----DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDY 344 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 99999999999999999999998876642 11 1 123466789999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++|||++...+++|++++++..|++.++|
T Consensus 345 ~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 345 PTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998864
No 24
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.3e-48 Score=418.21 Aligned_cols=357 Identities=20% Similarity=0.272 Sum_probs=297.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc---------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~--------- 93 (601)
++++.++++.+++|+.+...... . ..++...+ .....+|+.+.+.|| |+++||.+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~a-~--~~d~~~~~----p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~l 99 (404)
T PLN02519 27 DDTQLQFKESVQQFAQENIAPHA-A--AIDATNSF----PKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEI 99 (404)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch-H--HHHhcCCC----CchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987422110 0 00111111 112237999999997 677787654331
Q ss_pred ---CCchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 94 ---DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 94 ---~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
+.+.+ +.+|..++...|..+|+++|+++|||.+.+|+.++|+++|||++|||+.+++|+|+++ +|||+||
T Consensus 100 a~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln--- 174 (404)
T PLN02519 100 SRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN--- 174 (404)
T ss_pred hhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE---
Confidence 11222 3456556667889999999999999999999999999999999999999999999988 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+|++| +..||+++|+|+++.++++.|+.+|+|| ...|||++.+.|+++| +++++++.|.|+||+
T Consensus 175 --G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~~v~ 241 (404)
T PLN02519 175 --GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFENCF 241 (404)
T ss_pred --eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEEeCeEE
Confidence 99999999 8999999999998654455689999999 7789999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++++. .|.++. .....+...|+.+++.++|+++++++.+++|+++|.|||. ||.++|
T Consensus 242 Vp~~~~lg~------~~~G~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------pl~~~~ 302 (404)
T PLN02519 242 VPEENVLGQ------EGKGVY------VMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-------PIGEFQ 302 (404)
T ss_pred ecHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHHHhH
Confidence 999999984 343332 3445677889999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|+++++|.+.+++++.+++.++..++. +. . ....++.+|.++++.+.++++.++|+|||+||+.++
T Consensus 303 ~v~~~la~~~~~l~aar~~~~~aa~~~~~-------~~-~----~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~ 370 (404)
T PLN02519 303 FIQGKLADMYTSLQSSRSYVYSVARDCDN-------GK-V----DRKDCAGVILCAAERATQVALQAIQCLGGNGYINEY 370 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCC
Confidence 99999999999999999999998776542 11 1 123466789999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++|||++...+++|++++++..+++.+|+
T Consensus 371 ~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~ 402 (404)
T PLN02519 371 PTGRLLRDAKLYEIGAGTSEIRRMLIGRELFK 402 (404)
T ss_pred hHHHHHHhhhcceeeCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999986
No 25
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-48 Score=419.23 Aligned_cols=353 Identities=20% Similarity=0.238 Sum_probs=295.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc--------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~-------- 93 (601)
-++++.++++.+++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.++.
T Consensus 37 ~~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~ 107 (410)
T PTZ00461 37 PTPEHAALRETVAKFSREVVDKHA---------REDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHE 107 (410)
T ss_pred CCHHHHHHHHHHHHHHHHhCCccH---------HHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHH
Confidence 457888999999999977422110 1111122344678999999998 677887654331
Q ss_pred ----CC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 94 ----DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 94 ----~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
+. +.++..|..++..++..+|+++||++|||.+.+|++++|+++|||++|||+.++.|+|+++. +|+|+||
T Consensus 108 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg~~L~-- 184 (410)
T PTZ00461 108 LSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGNYVLN-- 184 (410)
T ss_pred HHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCeEEEE--
Confidence 11 12334455456677888999999999999999999999999999999999999999999872 3479999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+||+| +..||+++|+|++. .++++|+|| .+.|||++.+.|+++| +++++++.+.|+||
T Consensus 185 ---G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp-------~~~~Gv~v~~~~~~~G---~r~~~~~~l~f~~v 245 (410)
T PTZ00461 185 ---GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE-------RGTKGFTQGPKIDKCG---MRASHMCQLFFEDV 245 (410)
T ss_pred ---eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe-------CCCCCeecCCCCcccC---CCCCceEEEEEcce
Confidence 99999999 89999999999853 247899999 7789999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 246 ~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~ 306 (410)
T PTZ00461 246 VVPAENLLGE------EGKGMV------GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK-------PISNF 306 (410)
T ss_pred ecCHHHhCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc-------CHHhh
Confidence 9999999985 444433 4456677899999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+|++++++.+.+++++.+++.+++.++. .+ .....++++|.++++.+.++++.++|+|||+||+.+
T Consensus 307 q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~ 374 (410)
T PTZ00461 307 GQIQRYIAEGYADTEAAKALVYSVSHNVHP-------GN-----KNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRD 374 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999999999988765431 11 122456789999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
++++++|||++...+++|++++++..+++.+++.
T Consensus 375 ~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 375 MPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred CHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
No 26
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.3e-48 Score=412.35 Aligned_cols=350 Identities=21% Similarity=0.197 Sum_probs=289.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC--------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~-------- 94 (601)
++|+.++++.+++|+.+...... ...+....+...+|+.+.+.|| |+++||.+.++.+
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~---------~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l 72 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGF---------KERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQI 72 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHH
Confidence 36788999999999987532111 0111112344678999999998 6778876654321
Q ss_pred ----CchhhH-hhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007504 95 ----EPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (601)
Q Consensus 95 ----~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 169 (601)
.+.++. ....+++..+..+|+++|+++|||++.+|+.++++++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 a~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln---- 146 (372)
T TIGR03207 73 ARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN---- 146 (372)
T ss_pred HhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE----
Confidence 122222 11234556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 170 ~G~K~~v~~~~~~Ad~~lV~A~~~~~~-~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+||+| +..||+++|+|++..++ ...|+.+|+|| .+.|||++. .|+++| +++++++.|.|+||+
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 213 (372)
T TIGR03207 147 -GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP-------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVR 213 (372)
T ss_pred -EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc-------CCCCCeecC-cchhcc---CCCCCeeEEEECcee
Confidence 99999999 88999999999975422 23578899999 778999985 589999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++++. .+.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 214 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q 274 (372)
T TIGR03207 214 VPADHMLGN------EGQGFV------QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQ 274 (372)
T ss_pred ccHHHcCCC------CChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhH
Confidence 999999984 444432 3445678899999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+||++++|.+.+++++.+++++++.++. +. .....++++|.++++.+.++++.|+|+|||.||+++
T Consensus 275 ~v~~~la~~~~~~~~ar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~- 341 (372)
T TIGR03207 275 GVSHPLADAETQVEAARLLCLQTLWLKDH-------GL-----PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG- 341 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-
Confidence 99999999999999999999998776542 11 112347889999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARF 437 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ 437 (601)
+++++|||++...+++|++++++..|++.
T Consensus 342 ~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 342 DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999873
No 27
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.7e-48 Score=414.05 Aligned_cols=358 Identities=16% Similarity=0.167 Sum_probs=284.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++||.++++++++|+.++........ ......+.. .....+|+.+.++|| |+++||.+.++.+
T Consensus 4 lteeq~~l~~~~r~f~~~~~~~~~~~~--~~~~~~~~~--~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~ee 79 (395)
T TIGR03204 4 FSKEEQAFRDEVRSFFKDNVPADTRQK--LVEGRHLTK--DEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEE 79 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhCChhhhhh--hhccCCCCh--HHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 458899999999999987543211100 000000000 111368999999998 5778876544321
Q ss_pred -----CchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007504 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (601)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 169 (601)
.+.|+..+..+.+..|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 80 lg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln---- 153 (395)
T TIGR03204 80 LQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN---- 153 (395)
T ss_pred HHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe----
Confidence 24444334335556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 170 ~G~K~~v~~~~~~Ad~~lV~A~~~~~~-~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+||++ +..||+++|+|++..++ +..|+++|+|| .+.|||++.+...+.| +.+++.|.|+||+
T Consensus 154 -G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~~-----~~~~~~v~f~~v~ 219 (395)
T TIGR03204 154 -GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD-------MKSKGITVRPIQTIDG-----GVEVNEVFFDDVE 219 (395)
T ss_pred -eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-------CCCCCeEecChhhccC-----CCceeEEEEcceE
Confidence 99999999 89999999999975322 34678999999 7789999987655543 5678999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++|+. .+.++. .....+...|+.+++ +|.++++++.+++|+++|+|||+ ||++||
T Consensus 220 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-------~i~~~q 278 (395)
T TIGR03204 220 VPYENLVGE------ENKGWD------YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-------PVIEDA 278 (395)
T ss_pred EcHHHcCCC------CCchHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-------ccccCH
Confidence 999999984 344443 455667778887765 79999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH----------
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL---------- 398 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~---------- 398 (601)
.+||+|++|.+.+++++.++++++..... .+.. .....++++|.++++.+.++++.|+|+
T Consensus 279 ~vq~~la~~~~~~~aar~l~~~aa~~~~~------~~~~----~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~ 348 (395)
T TIGR03204 279 KFREKLAAVEIELKALELTQLRVVADEGK------HGKG----KPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDV 348 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999999999999999999998632110 0110 112358899999999999999999985
Q ss_pred hcccccccc----CChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 399 CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 399 ~GG~G~~~~----~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
|||+||+.+ +++.++|||.+...+++|++++++..|++.+|
T Consensus 349 ~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 349 HGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred cccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 889999955 57999999999999999999999999999876
No 28
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-48 Score=367.03 Aligned_cols=362 Identities=22% Similarity=0.264 Sum_probs=299.0
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHH---
Q 007504 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----EEASML--- 89 (601)
Q Consensus 17 ~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~gg~~--- 89 (601)
|+-.+...| ++|+..+|+++|.+..+.-... .....|.+ .++..+..+++.+|+.. -+|=.+
T Consensus 47 D~~~l~dqL--T~dE~air~~~Reycq~~l~Pr---vtea~r~e------~F~~~i~pemGsmGvlG~tikGYGCaG~S~ 115 (432)
T KOG0138|consen 47 DPLVLEDQL--TEDEIAIRDTFREYCQERLMPR---VTEANRNE------VFDREIIPEMGSMGVLGPTIKGYGCAGVSS 115 (432)
T ss_pred chhhhhhhc--CHHHHHHHHHHHHHHHHHhhhH---HHHHhhhc------cCChhhhhhhhccccccCcccCcCCCchHH
Confidence 333444433 4788899999999987632110 01112222 23456667777777631 111111
Q ss_pred --hhh-------cCC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCC
Q 007504 90 --RSS-------VDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (601)
Q Consensus 90 --~~~-------~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~ 158 (601)
+++ ++. ...+.+|.++...+|..+|+++||++|||.+++|+.++||++|||+||||+.+++|+|+||..
T Consensus 116 vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~ 195 (432)
T KOG0138|consen 116 VAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDES 195 (432)
T ss_pred HHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccC
Confidence 111 111 345688999999999999999999999999999999999999999999999999999999977
Q ss_pred CCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCcc
Q 007504 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD 238 (601)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~ 238 (601)
+..|.|| |+|.||+| .+.||++||+||...+++ +.-|||+ ++++|++...+..|++ ++.+.
T Consensus 196 ~ktyklN-----GsKtWI~n-sp~aDl~vvwAr~~t~n~---I~GFi~~-------k~~~GL~apkI~gK~s---LRas~ 256 (432)
T KOG0138|consen 196 NKTYKLN-----GSKTWITN-SPMADLFVVWARCETDNK---IRGFILE-------KGMRGLSAPKIEGKFS---LRASA 256 (432)
T ss_pred CceEEEC-----CeeeeecC-CcccceEEEEEecccCCc---eeeEEEe-------cCCCCCcCCCcCCeee---eeecc
Confidence 7779999 99999999 899999999999875543 6779999 8999999999999999 99999
Q ss_pred ceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007504 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 318 (601)
Q Consensus 239 ~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~ 318 (601)
+|.|.+|+|+||++++|.. -..+. -.++.++.+|..++...+|++..+++++.+|...|+|||+
T Consensus 257 tG~Ilmd~V~VPeE~~LPg-------~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~--- 320 (432)
T KOG0138|consen 257 TGMILMDGVEVPEENLLPG-------ASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR--- 320 (432)
T ss_pred cCceeecCCcCChhhcCCC-------ccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC---
Confidence 9999999999999999953 11121 2357888899999999999999999999999999999999
Q ss_pred CCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007504 319 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL 398 (601)
Q Consensus 319 ~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~ 398 (601)
|++.+|.+|.+|++|+..+.+.-.+++++..++++. ......++..|.+.+-.+.++++.++++
T Consensus 321 ----PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g------------~~tp~qiSl~Krn~~gKaleiAr~~Rdm 384 (432)
T KOG0138|consen 321 ----PLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQG------------KATPEQISLLKRNNCGKALEIARQARDM 384 (432)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc------------cCChhhhHHHhhccchhHHHHHHHHHHH
Confidence 999999999999999999999988999988877631 1123347889999999999999999999
Q ss_pred hccccccccCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 399 CGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 399 ~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
.||.|.+.++-+-+.+-+....-||||+-+++...++|.+-+
T Consensus 385 LGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 385 LGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred hcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999998754
No 29
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.6e-47 Score=405.99 Aligned_cols=359 Identities=18% Similarity=0.222 Sum_probs=288.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcccCCCHH----H-HHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcCC-----
Q 007504 31 AFQVSDRIARLVASDPAFRKDNRAMLSRK----E-LFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (601)
Q Consensus 31 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~~----- 95 (601)
..++++++++|++++..... . .+++. + ....+......+|+.+.++|| |+++||.+.++.+.
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e 79 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAE-Q--EFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAE 79 (394)
T ss_pred HHHHHHHHHHHHHHhcCccH-H--HHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHH
Confidence 35789999999987532100 0 00100 0 000011233578999999998 67888865443211
Q ss_pred --------chhhHhhh--hchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEE
Q 007504 96 --------PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVI 164 (601)
Q Consensus 96 --------~~~~~~~~--~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~TtA~~d~~~~~~vL 164 (601)
+.++..+. ......|..+|+++|+++|||++.+|++++|+++|||+ .|||+..+.|+|+++ +|+|+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~L 157 (394)
T cd01155 80 ETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVI 157 (394)
T ss_pred HHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEE
Confidence 12222221 12334688999999999999999999999999999997 579999999999998 789999
Q ss_pred ecCCCCceeeccCCCCCC--CcEEEEEEEEccCC--CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCC--cc
Q 007504 165 HSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MD 238 (601)
Q Consensus 165 ntp~~~G~K~~v~~~~~~--Ad~~lV~A~~~~~~--~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~--~~ 238 (601)
| |+|+|++| +.+ ||+++|+|++..++ ++.++.+|+|| .+.|||++.+.|+++| +++ ++
T Consensus 158 n-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~ 221 (394)
T cd01155 158 N-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP-------MDTPGVTIIRPLSVFG---YDDAPHG 221 (394)
T ss_pred E-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEe-------CCCCCeEeeccccccC---CCCCCCC
Confidence 9 99999999 644 78999999986432 23578999999 7789999999999999 997 56
Q ss_pred ceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007504 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 318 (601)
Q Consensus 239 ~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~ 318 (601)
++.|.|+||+||.+++|+. .|.++. .....+...|+..++.++|+++++++.+++|+++|+|||+
T Consensus 222 s~~v~f~dv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~--- 286 (394)
T cd01155 222 HAEITFDNVRVPASNLILG------EGRGFE------IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK--- 286 (394)
T ss_pred eeEEEEccEEecHHHcCCC------CChHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC---
Confidence 8899999999999999984 444433 4556677889999999999999999999999999999999
Q ss_pred CCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007504 319 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL 398 (601)
Q Consensus 319 ~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~ 398 (601)
||+++|.+|++|++|.+.+++++.+++.+++.+++ .. ..+....++++|+++++.+.++++.|+|+
T Consensus 287 ----~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~---~~~~~~~~~~aK~~~~~~a~~~~~~a~~~ 352 (394)
T cd01155 287 ----KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDT-------VG---NKAARKEIAMIKVAAPRMALKIIDRAIQV 352 (394)
T ss_pred ----cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876642 11 01234567899999999999999999999
Q ss_pred hccccccccCChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 399 CGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 399 ~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
|||+||+++++++++|||++...+++|++++++..+++.++
T Consensus 353 ~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 353 HGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred hcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999885
No 30
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=8.7e-47 Score=400.69 Aligned_cols=354 Identities=25% Similarity=0.308 Sum_probs=295.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc----------
Q 007504 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (601)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~---------- 93 (601)
+|+.++++.+++|+.+...... ...+....+....|+.+.+.|| |+++||.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~ 71 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLA---------AEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELA 71 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccch---------HHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHH
Confidence 3678899999999975322111 0111111234568999999887 577777543321
Q ss_pred --CCch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007504 94 --DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (601)
Q Consensus 94 --~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 169 (601)
+.+. .+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++||++..++|+|+++ +++|+||
T Consensus 72 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~---- 145 (373)
T cd01158 72 KVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN---- 145 (373)
T ss_pred hhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe----
Confidence 1122 23456556667888999999999999999999999999999999999999999999998 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccccc
Q 007504 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (601)
Q Consensus 170 ~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~V 249 (601)
|+|.|++| +..||+++|+|++..+++..++.+|+|| ...|||++.+.|+++| +++++++.|.|+||+|
T Consensus 146 -G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE-------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRV 213 (373)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---cCCCCceEEEeCcEEe
Confidence 99999999 8999999999987544345678999999 6789999999999999 9999999999999999
Q ss_pred CcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHH
Q 007504 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (601)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (601)
|.+++++. .+.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||. |+.+||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~ 274 (373)
T cd01158 214 PKENILGE------EGEGFK------IAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQG 274 (373)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHH
Confidence 99999985 343332 3445677789999999999999999999999999999998 8999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007504 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (601)
Q Consensus 330 ~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 409 (601)
+|++++++.+.+++++.+++.+++.++. . .+....++.+|+++++.+.++++.|+++|||.||+.+++
T Consensus 275 v~~~la~~~~~l~aa~~~~~~aa~~~~~-------~-----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~ 342 (373)
T cd01158 275 IQFKLADMATEIEAARLLTYKAARLKDN-------G-----EPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYP 342 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCCh
Confidence 9999999999999999999988776541 1 122345778999999999999999999999999999999
Q ss_pred hhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 410 l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++||++...+++|++++++.++++.+||
T Consensus 343 l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 343 VERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999985
No 31
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.8e-46 Score=400.94 Aligned_cols=359 Identities=26% Similarity=0.341 Sum_probs=292.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhh-----------
Q 007504 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS----------- 92 (601)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~----------- 92 (601)
+++.++++.+++|+.+...... . ...+.. . .......+|+.+.+.|+ |+++||.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~--~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEA-A--EIDRRI-E--DERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcch-h--hhhhhc-c--cccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 5677889999999987543110 0 000000 0 11112467788888886 67787743222
Q ss_pred -cCCc--hhhHhhhh---chHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCc-eEEEEeCCCCeEEEe
Q 007504 93 -VDEP--AFTDLHWG---MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIH 165 (601)
Q Consensus 93 -~~~~--~~~~~~~~---l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~-TtA~~d~~~~~~vLn 165 (601)
.+.+ ..+.++.. .....+..+|+++|+++|||++.+|+.++|+++|||++|||+.++. |+++.+ +++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln 158 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN 158 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE
Confidence 1111 12222221 3344677899999999999999999999999999999999999998 666664 3449999
Q ss_pred cCCCCceeeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCC-CCCeEEeeCCCcCCCCCCCCccceEEE
Q 007504 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLR 243 (601)
Q Consensus 166 tp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~-~~~~G~~~flV~~r~~~~~~~-~pGv~i~~~~~~~G~~~~~~~~~~~v~ 243 (601)
|+|+|||| +..||+++|+|++..+ .+.+|+++|+|| .+ .|||++.+.+.+.| +++++++.|.
T Consensus 159 -----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~ 222 (393)
T COG1960 159 -----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVP-------KDLTPGVSVGPILKKMG---LRGSATGEVF 222 (393)
T ss_pred -----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEe-------CCCCCCeeeccccCcCC---cCCCCeeEEE
Confidence 99999999 8999999999998765 456799999999 66 59999999976547 8999999999
Q ss_pred ecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccc
Q 007504 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (601)
Q Consensus 244 fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~ 323 (601)
|+||+||.+++++. .|.++. .....+..+|+.+++.++|.+++|++.+++|+++|+|||+ |
T Consensus 223 f~~v~vp~~~lig~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~ 283 (393)
T COG1960 223 FDDVRVPAENLLGE------EGDGFK------IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-------P 283 (393)
T ss_pred ECCeeccHHHcCCc------CCchHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------c
Confidence 99999999999983 566655 6678888999999999999999999999999999999997 9
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007504 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (601)
Q Consensus 324 i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G 403 (601)
|++||.+|++|+++.+.+++++.+++++++..+. .. .....++++|.++++.+.++++.++|+|||.|
T Consensus 284 i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g 351 (393)
T COG1960 284 IADFQLVQFKLADMAAELEAARLLVLRAAELADA-------GD-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYG 351 (393)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999987766542 11 12267899999999999999999999999999
Q ss_pred ccccCChhhhccccccccccCcchHHHHHHHHHHHHHHH
Q 007504 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (601)
Q Consensus 404 ~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 442 (601)
|+.+++++++|||++...+++|++++++..+++.+++..
T Consensus 352 ~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 352 YTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred cccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999998753
No 32
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-45 Score=408.44 Aligned_cols=340 Identities=19% Similarity=0.186 Sum_probs=275.5
Q ss_pred HHHHHHHHccC-----CHHHHHHHhhhcC---------C-chhhHhh--hh-chHHHHccCCCHHHHHhhHHHHhcccce
Q 007504 71 YAWKRIIELRL-----SEEEASMLRSSVD---------E-PAFTDLH--WG-MFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (601)
Q Consensus 71 ~~~~~~~~~g~-----~~~~gg~~~~~~~---------~-~~~~~~~--~~-l~~~~i~~~Gt~eq~~~~l~~l~~g~~~ 132 (601)
++|+.+.+.|| |+++||.+.+... . ..++.++ .. ..+.+|..+||++||++|||++.+|+++
T Consensus 103 e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~ 182 (622)
T PTZ00456 103 EAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWS 182 (622)
T ss_pred HHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChh
Confidence 58999999998 5777776543210 0 1122111 11 2345788999999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCC-eEEEecCCCCceeeccCCCCCCC----cEEEEEEEEccC-CCCCceEEEEE
Q 007504 133 GCYAQTELGHGSNVQGLETTATFDPQTD-EFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFIV 206 (601)
Q Consensus 133 ~~~a~tE~~~Gsd~~~~~TtA~~d~~~~-~~vLntp~~~G~K~~v~~~~~~A----d~~lV~A~~~~~-~~~~G~~~flV 206 (601)
+|+++|||++|||+..++|+|+++ +| +|+|| |+|+||++ +.++ ++.+|+||+..+ ++..|+++|+|
T Consensus 183 ~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlV 254 (622)
T PTZ00456 183 GTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFLV 254 (622)
T ss_pred hhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEEE
Confidence 999999999999999999999987 44 69999 99999998 7663 578999998653 34578999999
Q ss_pred eeccCCC---CCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHH
Q 007504 207 QLRSLED---HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283 (601)
Q Consensus 207 ~~r~~~~---~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~ 283 (601)
|...++. ....+||++..+.+|+| +++++++.|.||| |.+++||. .+.++. .++..|+.
T Consensus 255 p~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~---~~~~llG~------~~~Gl~------~~~~~mn~ 316 (622)
T PTZ00456 255 PRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFEN---SVGYLIGE------PNAGMK------QMFTFMNT 316 (622)
T ss_pred eCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeC---hhHhhcCC------CChHHH------HHHHHHHH
Confidence 9543221 12347899999999999 9999999999999 46788884 455554 56788889
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCC-----CCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007504 284 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV 358 (601)
Q Consensus 284 ~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~-----~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~ 358 (601)
+|+.+++.++|+++++++.+++|+++|+||+.+.+ .+..||+++|.+|++|++|.+.++++|.+++++++.++..
T Consensus 317 aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 317 ARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999855322 2356999999999999999999999999999998877642
Q ss_pred HHHhhcCCCCC----hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHH-HH
Q 007504 359 TQRLQANDFST----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL-LQ 433 (601)
Q Consensus 359 ~~~~~~~~~~~----~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~-~~ 433 (601)
... .+... .......++++|+++++.+.++++.|+|+|||+||++++++++++||++...+++|+|++++ ..
T Consensus 397 ~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dl 473 (622)
T PTZ00456 397 AAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDF 473 (622)
T ss_pred ccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHH
Confidence 100 01000 01234578899999999999999999999999999999999999999999999999999997 58
Q ss_pred HHHHHH
Q 007504 434 VARFLM 439 (601)
Q Consensus 434 ia~~ll 439 (601)
|+|.++
T Consensus 474 i~rkll 479 (622)
T PTZ00456 474 IGRKVL 479 (622)
T ss_pred HHHHhh
Confidence 899887
No 33
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=2.1e-45 Score=424.09 Aligned_cols=289 Identities=19% Similarity=0.262 Sum_probs=256.3
Q ss_pred hHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCC--CC
Q 007504 106 FVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KV 182 (601)
Q Consensus 106 ~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~--~~ 182 (601)
.+.+|..+|+++||++|||++++|++++|+++|||+ +|||+.++.|+|+++ +|+|+|| |+|+||+| + ..
T Consensus 525 ~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~~ 596 (822)
T PLN02876 525 NMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDPR 596 (822)
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCCC
Confidence 345788999999999999999999999999999997 689999999999987 8899999 99999998 6 47
Q ss_pred CcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCc--cceEEEecccccCcCccccccc
Q 007504 183 STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVS 259 (601)
Q Consensus 183 Ad~~lV~A~~~~~~-~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~--~~~~v~fd~v~VP~~~lL~~~~ 259 (601)
||+++|+|++..++ +..++++|+|| .+.|||++.+.|.++| +++. +++.|.||||+||.+++|+.
T Consensus 597 ad~~lv~ar~~~~~~~~~~~s~flV~-------~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~-- 664 (822)
T PLN02876 597 CRVLIVMGKTDFNAPKHKQQSMILVD-------IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILLG-- 664 (822)
T ss_pred CCEEEEEEecCCCCCCCCcceEEEEe-------CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheecC--
Confidence 99999999975432 23578899999 6789999999999999 9874 57899999999999999974
Q ss_pred cccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHH
Q 007504 260 QVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA 339 (601)
Q Consensus 260 ~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a 339 (601)
.|.++. .+...+..+|+..++.++|++++|++.+++|+++|+|||+ ||++||.+|++|++|.+
T Consensus 665 ----~g~g~~------~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~ 727 (822)
T PLN02876 665 ----EGRGFE------IAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCRV 727 (822)
T ss_pred ----CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHHH
Confidence 444433 4556777899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccc
Q 007504 340 SAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVP 419 (601)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~ 419 (601)
.+++++++++.+++.+++. .. .+....++++|+++++.+.+++++|+|+|||+||+++++++++|||++.
T Consensus 728 ~leaar~l~~~aa~~~d~~------~~----~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~ 797 (822)
T PLN02876 728 ELEQTRLLVLEAADQLDRL------GN----KKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATART 797 (822)
T ss_pred HHHHHHHHHHHHHHHHHcc------CC----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhh
Confidence 9999999999998776521 00 1234568899999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHHHHHHH
Q 007504 420 ACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 420 ~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
..+++|++++++..+++.+|+.
T Consensus 798 ~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 798 LRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred cccccChHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.2e-44 Score=377.33 Aligned_cols=326 Identities=27% Similarity=0.361 Sum_probs=280.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhhhcCCchhhHhhhhchHH
Q 007504 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVP 108 (601)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gg~~~~~~~~~~~~~~~~~l~~~ 108 (601)
+++.++++.+++++.++...... .........|+.+.++||. +++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~----------------------~~~~ 46 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYAR------------ERRETPEEPWELLAELGLL----------------------LGAA 46 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHH------------hHHhhCCCCHHHHHHHHHH----------------------hchH
Confidence 36778999999999875332111 0011224467778777775 5666
Q ss_pred HHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEE
Q 007504 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV 188 (601)
Q Consensus 109 ~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV 188 (601)
+|..+|+++|+++||+.+.+|++++|+++|||++|||+..+.|+++++ ++||+|| |+|+|+++ +..||+++|
T Consensus 47 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad~~lv 118 (327)
T cd00567 47 LLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDADLFIV 118 (327)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCCEEEE
Confidence 788899999999999999999999999999999999999999999988 7899999 99999999 899999999
Q ss_pred EEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCce
Q 007504 189 YARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKY 267 (601)
Q Consensus 189 ~A~~~~~~-~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~ 267 (601)
+|++..++ +..++.+|+|| .+.|||++.+.|.++| +++++++.+.|+||+||.+++++. .+.+
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~~------~~~g 182 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLGE------EGGG 182 (327)
T ss_pred EEEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCCC------CCch
Confidence 99976533 34578899999 6779999999999999 999999999999999999999974 3333
Q ss_pred eccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHH
Q 007504 268 VQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 347 (601)
Q Consensus 268 ~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~ 347 (601)
.. .....+...|+.+++.++|+++++++.+++|+++|+|||. ||.+||.+|++|+++.+.+++++.+
T Consensus 183 ~~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~ 249 (327)
T cd00567 183 FE------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLL 249 (327)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHHHHHH
Confidence 22 3456677899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcch
Q 007504 348 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN 427 (601)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~ 427 (601)
++.+++.+++ .. ......++++|+++++.+.++++.|+++|||+||+++++++++|||++...+++|++
T Consensus 250 ~~~a~~~~~~-------~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~ 318 (327)
T cd00567 250 LYRAAWLLDQ-------GP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTA 318 (327)
T ss_pred HHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHH
Confidence 9988776642 11 114566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007504 428 IVLLLQVAR 436 (601)
Q Consensus 428 ~vl~~~ia~ 436 (601)
++++.++++
T Consensus 319 ~~~~~~~~~ 327 (327)
T cd00567 319 EIQRLIIAR 327 (327)
T ss_pred HHHHHHhcC
Confidence 999988864
No 35
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.7e-44 Score=385.64 Aligned_cols=303 Identities=21% Similarity=0.243 Sum_probs=258.6
Q ss_pred chhhHhhhhchHHHHccCCCHHHHHhhHHHHhccc----ceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCc
Q 007504 96 PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME----IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 171 (601)
Q Consensus 96 ~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~----~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G 171 (601)
..|+.+|. +++.+|..+|+++| ++|||++.+|+ +++|+++|||++|||+.+++|+|+++. +|+|+|| |
T Consensus 110 ~~p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G 181 (418)
T cd01154 110 LCPLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----G 181 (418)
T ss_pred cCcHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----E
Confidence 34544443 57889999999886 47999999997 899999999999999999999999874 6789999 9
Q ss_pred eeeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccC
Q 007504 172 SKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIP 250 (601)
Q Consensus 172 ~K~~v~~~~~~Ad~~lV~A~~~~~-~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP 250 (601)
+|+|+|+ + .||+++|+|++..+ ++..|+++|+||.+.++ ...|||+|.++++++| +++++++.|.|+||
T Consensus 182 ~K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv--- 251 (418)
T cd01154 182 HKWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPRLLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA--- 251 (418)
T ss_pred EEEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---
Confidence 9999999 7 99999999998653 34579999999954322 1236999999999999 99999999999998
Q ss_pred cCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHH
Q 007504 251 RNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQ 330 (601)
Q Consensus 251 ~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~ 330 (601)
+++++|. .|.++. .+...+...|+.+++.++|.++++++.+++|+++|++||+ ||+++|.+
T Consensus 252 ~~~~lG~------~g~G~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v 312 (418)
T cd01154 252 EAYLIGD------EGKGIY------YILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLM 312 (418)
T ss_pred CccccCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHH
Confidence 3788874 565554 5667888999999999999999999999999999999999 99999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCCh
Q 007504 331 QNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGL 410 (601)
Q Consensus 331 q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l 410 (601)
|++|+++.+.+++++.+++++++.++... .............++++|+++++.+.+++++|+|+|||.||+.++++
T Consensus 313 ~~~La~~~~~~eaar~l~~~aa~~~~~~~----~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l 388 (418)
T cd01154 313 RRDLAEMEVDVEAATALTFRAARAFDRAA----ADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPV 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChH
Confidence 99999999999999999999987765310 00000001123457889999999999999999999999999999999
Q ss_pred hhhccccccccccCcchHHHHHHHHHHHH
Q 007504 411 PELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 411 ~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
+++|||++...+++|++++++..++|.|.
T Consensus 389 ~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 389 ARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
No 36
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1e-44 Score=385.43 Aligned_cols=352 Identities=19% Similarity=0.187 Sum_probs=278.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc----------
Q 007504 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (601)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~---------- 93 (601)
+||.++++.+++|+.++........ ... + ..........+|+.+.+.|| |+++||.+.+..
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~ 76 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREE-SAL--G-YREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMA 76 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCcccccc-ccc--c-ccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHH
Confidence 3677999999999988643221110 000 0 00011123456788888887 677877654331
Q ss_pred --CCchhhH-hhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 007504 94 --DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (601)
Q Consensus 94 --~~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~ 170 (601)
+.+.++. ....+++..|..+|+++|+++||+++.+|+.++++++|||++|||+..+.|+|+++ +++|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~----- 149 (380)
T cd01152 77 AAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN----- 149 (380)
T ss_pred hcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe-----
Confidence 1233332 22234566788999999999999999999999999999999999999999999987 7899999
Q ss_pred ceeeccCCCCCCCcEEEEEEEEccCCC-CCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccccc
Q 007504 171 SSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (601)
Q Consensus 171 G~K~~v~~~~~~Ad~~lV~A~~~~~~~-~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~V 249 (601)
|.|+||++ +..||+++|+|++..++. ..++.+|+|| ...|||++.+.+.++| +++++.+.|+||+|
T Consensus 150 G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v~V 216 (380)
T cd01152 150 GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD-------MDSPGVTVRPIRSING-----GEFFNEVFLDDVRV 216 (380)
T ss_pred cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe-------CCCCceEeeehhhccC-----CCCcceEEecCcCc
Confidence 99999999 899999999999764332 3578999999 6789999999988876 46789999999999
Q ss_pred CcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHH
Q 007504 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (601)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (601)
|.+++|+. .|.++. .+...+...|+.+++ .+..+++.+++|+++|.+||+ ||.+||.
T Consensus 217 p~~~~lg~------~~~g~~------~~~~~l~~~r~~~~~----~~~~~~~~a~~~a~~r~~~g~-------~l~~~~~ 273 (380)
T cd01152 217 PDANRVGE------VNDGWK------VAMTTLNFERVSIGG----SAATFFELLLARLLLLTRDGR-------PLIDDPL 273 (380)
T ss_pred chhcccCC------CCchHH------HHHHHHHhcccccch----hhhHHHHHHHHHHHHHHhcCC-------CcccCHH
Confidence 99999984 454433 444556666766544 444555677889999999998 9999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--
Q 007504 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS-- 407 (601)
Q Consensus 330 ~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~-- 407 (601)
+|++|++|.+.+++++.+++.+++.+++ +. .....++++|+++++.+.++++.|+|++||.||+.+
T Consensus 274 vq~~la~~~~~l~~a~~l~~~aa~~~~~-------~~-----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~ 341 (380)
T cd01152 274 VRQRLARLEAEAEALRLLVFRLASALAA-------GK-----PPGAEASIAKLFGSELAQELAELALELLGTAALLRDPA 341 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-----CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 9999999999999999999999887652 11 112346899999999999999999999999999988
Q ss_pred ------CChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 408 ------SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 408 ------~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
+++++++||++...+++|++++++..+++.++
T Consensus 342 ~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 342 PGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred cccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999876
No 37
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.9e-44 Score=386.13 Aligned_cols=290 Identities=20% Similarity=0.191 Sum_probs=251.7
Q ss_pred chHHHHccCCCHHHHHhhHHHHhccc-------------ceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCc
Q 007504 105 MFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 171 (601)
Q Consensus 105 l~~~~i~~~Gt~eq~~~~l~~l~~g~-------------~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G 171 (601)
..+..+..+|+++|+++|+|++.+|+ +++++++|||++|||+..++|+|+++. +|+|+|| |
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G 212 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----G 212 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----E
Confidence 45566777799999999999999997 566999999999999999999999852 6789999 9
Q ss_pred eeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCc
Q 007504 172 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (601)
Q Consensus 172 ~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~ 251 (601)
.|+|+++ ..||+++|+||+. .|+++|+||...++ ...+||++...++|+| ++++++++|.|+|| .
T Consensus 213 ~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp~~~p~--g~~nGv~i~rl~~klG---~r~~~t~ev~f~dv---~ 277 (538)
T PRK11561 213 HKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASSEVEFQDA---I 277 (538)
T ss_pred EEEEEEc--hhhCEEEEEEEEC-----CceEEEEEECCCCC--CCCCceEEeccccccc---CCCCceeEEEECCH---H
Confidence 9999994 6799999999974 47999999932111 1134899999999999 99999999999999 4
Q ss_pred CccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHH
Q 007504 252 NQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (601)
Q Consensus 252 ~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q 331 (601)
+++||. .|.++. .+...+...|+.+++.++|.+++|++.+++|+++|+|||+ ||+++|.+|
T Consensus 278 ~~llG~------~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~~q~vq 338 (538)
T PRK11561 278 GWLLGE------EGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIEQPLMR 338 (538)
T ss_pred HHHCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------ccccCHHHH
Confidence 788884 666665 6677888999999999999999999999999999999999 999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChh
Q 007504 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411 (601)
Q Consensus 332 ~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~ 411 (601)
++|++|.+.+++++.+++++++.+++. .+..........++++|.++++.+.+++.+|+|+|||+||+++++++
T Consensus 339 ~~LAdm~~~ieaar~l~~~aa~~~d~~------~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~le 412 (538)
T PRK11561 339 QVLSRMALQLEGQTALLFRLARAWDRR------ADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELP 412 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHH
Confidence 999999999999999999999887631 01001111345678899999999999999999999999999999999
Q ss_pred hhccccccccccCcchHHHHHHHHHHHHH
Q 007504 412 ELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 412 ~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
++|||++...++||++++++..++|.+.+
T Consensus 413 rl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 413 RLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999875
No 38
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.5e-43 Score=377.63 Aligned_cols=340 Identities=19% Similarity=0.214 Sum_probs=267.0
Q ss_pred HHHHHHHHHccC-----CHHHHHHHhhhc------------CCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccce
Q 007504 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (601)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~gg~~~~~~------------~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~ 132 (601)
.++|+.+.+.|| |+++||.+.++. +.+.++..........|..+|+++|+++|+|++.+|+.+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~ 118 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWT 118 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 467899999887 567776554321 112222111123445688889999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCC----cEEEEEEEEccCC-CCCceEEEEEe
Q 007504 133 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFIVQ 207 (601)
Q Consensus 133 ~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~A----d~~lV~A~~~~~~-~~~G~~~flV~ 207 (601)
+|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|++| +.+| ++++|+|++..++ +..++++|+||
T Consensus 119 ~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp 191 (407)
T cd01153 119 GTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVP 191 (407)
T ss_pred EEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEe
Confidence 9999999999999999999999873 3589999 99999999 7776 5788999875322 33578999999
Q ss_pred eccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHH
Q 007504 208 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 287 (601)
Q Consensus 208 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~ 287 (601)
.+.++ ...|||++.+.|+++| +++++++.|.|+||+|| +|+. +|.++. .....+...|+.
T Consensus 192 ~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg~------~~~g~~------~~~~~l~~~r~~ 251 (407)
T cd01153 192 KFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIGE------EGMGLA------QMFAMMNGARLG 251 (407)
T ss_pred ccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeCC------CCccHH------HHHHHHHHHHHH
Confidence 43211 1138999999999999 99999999999999999 6763 454443 456677888999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccCCCCC-CCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007504 288 IVADASCALSRAVCIATRYSAVRRQFGSKNG-GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (601)
Q Consensus 288 ~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~-~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (601)
+++.++|+++++++.+++|+++|+|||++.. .+..++.++|.+|++|+++.+.+++++.+++++++.+++........+
T Consensus 252 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~ 331 (407)
T cd01153 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGE 331 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 9999999999999999999999999999422 122348999999999999999999999999998887764210000000
Q ss_pred CCC--hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHH-HHHH
Q 007504 367 FST--LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL-QVAR 436 (601)
Q Consensus 367 ~~~--~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~-~ia~ 436 (601)
... .......++++|+++++.+.++++.++++|||.||+++++++++|||++...+++|++++++. .+++
T Consensus 332 ~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 332 DRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 000 001245578899999999999999999999999999999999999999999999999998887 4443
No 39
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=6.7e-41 Score=355.90 Aligned_cols=328 Identities=18% Similarity=0.092 Sum_probs=259.4
Q ss_pred HHHHHHHHHccC-----CHHHHHHHhhhc------------CCchhh--HhhhhchHHHHccCCCHHHHHhhHHHHhccc
Q 007504 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (601)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~gg~~~~~~------------~~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (601)
.+.|+.+.+.|| |+++||.+.++. +.+.++ .+|. .....|..+|+++|+++|++++.+|+
T Consensus 25 ~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 25 YEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCC
Confidence 467888998887 677887654431 112222 3443 33467888999999999999999999
Q ss_pred ceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeecc
Q 007504 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 210 (601)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~ 210 (601)
+++ .++|||++|+ +..+.|+++.+ +++|+|| |+|.||++ +..||+++|+|++.. .++.+|+||
T Consensus 104 ~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~~~~lV~--- 166 (377)
T cd01163 104 IFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKLVFAAVP--- 166 (377)
T ss_pred eEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcEEEEEEe---
Confidence 765 5999999886 66677777766 7899999 99999999 899999999998532 357789999
Q ss_pred CCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHH
Q 007504 211 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290 (601)
Q Consensus 211 ~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a 290 (601)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .+.+.. ....+...|+.+++
T Consensus 167 ----~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~------~~~g~~-------~~~~~~~~~l~~aa 226 (377)
T cd01163 167 ----TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLPR------PNAPDR-------GTLLTAIYQLVLAA 226 (377)
T ss_pred ----CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccCC------Cccccc-------cccccHHHHHHHHH
Confidence 7789999999999999 999999999999999999999985 333321 01123456788999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-ccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007504 291 DASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 369 (601)
Q Consensus 291 ~~~g~~~~al~~a~~Ya~~R~-qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (601)
.++|+++++++.+++|+++|+ +||.+... ++.++|.+|++|++|.+.+++++++++.+++.+++........+...
T Consensus 227 ~~lG~a~~al~~~~~~~~~R~~~~g~~~~~---~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~ 303 (377)
T cd01163 227 VLAGIARAALDDAVAYVRSRTRPWIHSGAE---SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEA 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCcc---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 999999999999999999995 88873221 58899999999999999999999999999988875321100000111
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 370 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 370 ~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
..+....++++|.++++.+.++++.|+|+|||+||+++++++++|||++...++... +.....++.+++
T Consensus 304 ~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~-~~~~~~~~~~~~ 372 (377)
T cd01163 304 RGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPV-IYKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHH-HHHHHHhchhhc
Confidence 123456688999999999999999999999999999999999999999998766666 455556666655
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-38 Score=342.11 Aligned_cols=421 Identities=14% Similarity=0.051 Sum_probs=305.4
Q ss_pred HHHHHHHHHc-cC-----CHHHHHHHhhhcC------------Cchhh--HhhhhchHHHHccCCCHHHHHhhHHHHhcc
Q 007504 70 AYAWKRIIEL-RL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 129 (601)
Q Consensus 70 ~~~~~~~~~~-g~-----~~~~gg~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g 129 (601)
..+.+.+.++ || |+++||.+.+... .+.++ ..|..+....|..+|+++||++|||++++|
T Consensus 53 ~~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasG 132 (520)
T PTZ00457 53 EQIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDG 132 (520)
T ss_pred HHHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 3444456677 66 7888887654321 12222 245556667888899999999999999999
Q ss_pred cceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEcc----C-C--CCCceE
Q 007504 130 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT----D-G--QDHGVN 202 (601)
Q Consensus 130 ~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~----~-~--~~~G~~ 202 (601)
+.++++|+|| +.|||+.++.|+|+++. +|+|+|| |+|.|+ + |..||+++|+|++.. + + ...|++
T Consensus 133 e~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~git 203 (520)
T PTZ00457 133 TIMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVSRNS 203 (520)
T ss_pred CcEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-CchhcEEEEEeecCCcccccccccCcCceE
Confidence 9999999999 99999999999999863 4579999 999977 6 789999999999753 1 1 135799
Q ss_pred EEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHH
Q 007504 203 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 282 (601)
Q Consensus 203 ~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~ 282 (601)
+|+|| .+.|||++++ +.|.|||| |.+++||. .|.++. .....+.
T Consensus 204 ~FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~vLG~------~g~G~~------~a~~~L~ 247 (520)
T PTZ00457 204 FFICA-------KDAKGVSVNG---------------DSVVFENT--PAADVVGV------VGEGFK------DAMITLF 247 (520)
T ss_pred EEEEE-------CCCCceEEec---------------CEEEECCC--CHHHhCCC------CCchHH------HHHHHHH
Confidence 99999 7889999863 47999997 99999984 565554 5667788
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007504 283 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 362 (601)
Q Consensus 283 ~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~ 362 (601)
.+|+.+++.++|+++++++.+++|++ +|.+||+|++|.+.+++++++++.+++.+|+
T Consensus 248 ~~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~----- 304 (520)
T PTZ00457 248 TEQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDL----- 304 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 89999999999999999999999984 3789999999999999999999999998863
Q ss_pred hcCCCCChhhHHHHHHhHHHHHH---HHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 363 QANDFSTLPEAHACTAGLKSLTT---TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 363 ~~~~~~~~~~~~~~~~~aK~~~t---~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
+ ..+.+..++++|+|++ +.++.++++++| .++|+++++||++.+.|+||+|++++ +.-+
T Consensus 305 --g----~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~----~~~~ 366 (520)
T PTZ00457 305 --P----TEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY----SSAV 366 (520)
T ss_pred --C----CcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH----HHHH
Confidence 1 1346788999999999 888888888877 79999999999999999999999999 1111
Q ss_pred HHHHhhcCCCCCcccccc---ccchhHhhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChhhh
Q 007504 440 KTVSQLGYGNMPVGTTTY---MGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF-----TNQEEG 511 (601)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~-----~~~~~~ 511 (601)
. .+ ..++-..... |...+.-........ ..+|..+.+ .+++++.+..++... .+++..
T Consensus 367 ~-ag----~~~~g~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~l~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~ 432 (520)
T PTZ00457 367 C-CG----VEDYGLFFQRASTLQMMQARTLRSLGVR----DRVPIKNLP-----DCSLIDEAVVAFGNAVEATFVRSGSQ 432 (520)
T ss_pred h-hc----ccchHHHHHHhhhhhhHHHHHHHhcCCC----CCCCcchhH-----HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1 00 1111000000 111110000000000 013332221 223333333333221 134566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCChHHHHHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHH
Q 007504 512 FAELAADLVEAAVAHCQLIVVSKFIEKLQQD----IPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANE 587 (601)
Q Consensus 512 ~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~----~~~~~~~~vL~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~ 587 (601)
..+.+..|.+++++-+++|.+..-.++.++. .++.+....|.+.++.-|-.++..+...+..+++.+.+..+.|-+
T Consensus 433 i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~~~~~~~~~~~~a~ 512 (520)
T PTZ00457 433 VPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNVGKTADDSYKRIAL 512 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Confidence 6778889999999999999999977777542 234445556888888889999999998888887777555555555
Q ss_pred HHH
Q 007504 588 QLR 590 (601)
Q Consensus 588 ~~~ 590 (601)
.+.
T Consensus 513 ~~~ 515 (520)
T PTZ00457 513 EMC 515 (520)
T ss_pred HHH
Confidence 443
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.9e-36 Score=320.94 Aligned_cols=326 Identities=13% Similarity=0.028 Sum_probs=249.4
Q ss_pred HHHHHHHHHccC-----CHHHHHHHhhhc------------CCchhhH-hhhhchHHHHccCCCHHHHHhhHHHHhcccc
Q 007504 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 131 (601)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~gg~~~~~~------------~~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~ 131 (601)
.++|+.+.+.|| |+++||.+.+.. +.+.++. ....+....+..+++++|++.|++.. .+.+
T Consensus 25 ~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 103 (370)
T cd01159 25 DEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGP-DTLL 103 (370)
T ss_pred HHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCC-CceE
Confidence 457888888887 677777654431 1122221 11235556777889999998887642 1111
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccC
Q 007504 132 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL 211 (601)
Q Consensus 132 ~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~ 211 (601)
.++ ..+.|+|+++ +|+|+|| |+|.|||+ +..||+++|.|++..+++..++++|+||
T Consensus 104 ~g~------------~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~---- 159 (370)
T cd01159 104 AGS------------YAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFVVP---- 159 (370)
T ss_pred Eee------------ecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEEEE----
Confidence 111 2356889887 7899999 99999999 8999999999997543345679999999
Q ss_pred CCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHH
Q 007504 212 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291 (601)
Q Consensus 212 ~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~ 291 (601)
.+ ||++.+.|+++| +++++++.|.|+||+||.+++|+........+.+... +. .........|+.+++.
T Consensus 160 ---~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~~aa~ 228 (370)
T cd01159 160 ---RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGST--PV-YRMPLRQVFPLSFAAV 228 (370)
T ss_pred ---hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCC--cc-ccCchHHHHHHHHHHH
Confidence 44 999999999999 9999999999999999999999742100000111000 00 0112345678899999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChh
Q 007504 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 371 (601)
Q Consensus 292 ~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (601)
++|+++++++.+++|+++|.||+.. + .||+++|.+|+++++|.+.+++++.+++.+++.+++.... .+. ...
T Consensus 229 ~lG~a~~~l~~~~~~~~~R~~~~~~-g---~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~---~~~-~~~ 300 (370)
T cd01159 229 SLGAAEGALAEFLELAGKRVRQYGA-A---VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALA---GGP-IDV 300 (370)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCC-c---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-CCH
Confidence 9999999999999999999998421 0 1899999999999999999999999999999988754211 111 112
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcch-HHHHHHHHHHHH
Q 007504 372 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLM 439 (601)
Q Consensus 372 ~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll 439 (601)
+....++++|+++++.+.++++.++|+|||.||+.+++++++|||++...+++|++ ++++..++|.+|
T Consensus 301 ~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l 369 (370)
T cd01159 301 EERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALL 369 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhc
Confidence 34456788999999999999999999999999999999999999999999999999 999999999886
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=277.64 Aligned_cols=287 Identities=21% Similarity=0.307 Sum_probs=252.8
Q ss_pred HHccCCCHHHHHhhHHHHhcccceeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCC-CCCcEE
Q 007504 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG-KVSTHA 186 (601)
Q Consensus 109 ~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~-~~Ad~~ 186 (601)
.|.++|++|||.+||-++.+|++..|||||||. +.||..+++...+++ ++.|||| |.|||++|.+ +.|.++
T Consensus 91 vl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv~ 163 (392)
T KOG1469|consen 91 VLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRIA 163 (392)
T ss_pred ehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEEE
Confidence 478999999999999999999999999999998 668999999999988 8999999 9999999832 457899
Q ss_pred EEEEEEccC--CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCcc--ceEEEecccccCcCcccccccccc
Q 007504 187 VVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVT 262 (601)
Q Consensus 187 lV~A~~~~~--~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~--~~~v~fd~v~VP~~~lL~~~~~v~ 262 (601)
+++.+++.. .++..-++.||| .+.|||.|...-...| +...+ ..+|.|+|||||..|+|-.
T Consensus 164 i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlLG----- 228 (392)
T KOG1469|consen 164 IFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLLG----- 228 (392)
T ss_pred EEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceeec-----
Confidence 999998764 234556899999 6789999999888888 54433 5799999999999999864
Q ss_pred CCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHH
Q 007504 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAY 342 (601)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~ 342 (601)
+|.++. +..+.+..+|+..|.-.+|.+++++++..+-+.+|..||+ ++..+.++.+-++..-..++
T Consensus 229 -eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRveiE 294 (392)
T KOG1469|consen 229 -EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVEIE 294 (392)
T ss_pred -CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhHhh
Confidence 677765 4556677899999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccc
Q 007504 343 AFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACT 422 (601)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~ 422 (601)
.+|.++.+++..+|.. ++ ..+....+|.|..+-..+..+++.++|.|||.|.+.+.++.++|.-++..++
T Consensus 295 qaRLLvLkAAh~mD~~------G~----k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lri 364 (392)
T KOG1469|consen 295 QARLLVLKAAHSMDTL------GN----KGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRI 364 (392)
T ss_pred hhhhhhhhhhhhhhhh------cc----hhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEe
Confidence 9999999999888742 11 3445567899999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHH
Q 007504 423 YEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 423 ~~G~~~vl~~~ia~~ll~~ 441 (601)
..|..++++..+++.-++.
T Consensus 365 adgPd~vhL~ai~~le~~~ 383 (392)
T KOG1469|consen 365 ADGPDEVHLSAIAKLELRD 383 (392)
T ss_pred ccCCCccchhhhhhhhHHH
Confidence 9999999999999876654
No 43
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=99.88 E-value=4e-22 Score=190.00 Aligned_cols=124 Identities=31% Similarity=0.532 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHH
Q 007504 476 DWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPI 551 (601)
Q Consensus 476 ~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~v 551 (601)
|+.||++++++|++|+++++..++++++. +.+.+++||+++++++++|+||+++++++.|+++|+..+.+++++.|
T Consensus 1 d~~~~~~l~~a~~~r~~~ll~~~~~~l~~~~~~g~~~~~awn~~~~~l~~~a~Ah~e~~i~~~f~~~i~~~~~~~~~~~v 80 (187)
T PF01756_consen 1 DLLDPEFLLQAFEHRAARLLQRAAQKLQKLMKSGKSPFEAWNDCSVQLVRAAKAHAERYILEQFIEAIQSSCADPEVRQV 80 (187)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSG-SSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 57899999999999999999999999755 57789999999999999999999999999999999933899999999
Q ss_pred HHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 552 LEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 552 L~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
|.+||.||||+.|++++|+|+++||+|++|++.|++++.+||.+|||+
T Consensus 81 L~~L~~Lyal~~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~ 128 (187)
T PF01756_consen 81 LRQLCQLYALSIIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPN 128 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999997
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.85 E-value=3.6e-20 Score=199.42 Aligned_cols=248 Identities=8% Similarity=0.064 Sum_probs=186.6
Q ss_pred ccCCCHH--HHHhhHHHHhcccceeEEeccCCCCC-C----CCCC--CceEEEEeCCCCeEEEecCCCCceeeccCCCCC
Q 007504 111 KGQGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQG--LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181 (601)
Q Consensus 111 ~~~Gt~e--q~~~~l~~l~~g~~~~~~a~tE~~~G-s----d~~~--~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~ 181 (601)
...|++- --.+|+..+.+..+..+.++|.|-.- | .... +-...+. .+++||||| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve-~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVE-QTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEE-EcCCCEEEe-----CHHHhhhh-c-
Confidence 4455432 34689999999999999999988421 2 1111 1112222 237899999 99999999 7
Q ss_pred CCcEEEEEEEEccCCCC-Cc--eEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCc-----------cceEEEeccc
Q 007504 182 VSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEHV 247 (601)
Q Consensus 182 ~Ad~~lV~A~~~~~~~~-~G--~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~-----------~~~~v~fd~v 247 (601)
.||.++|++++...+++ .+ ..+|+|| .++|||++....+++| .++. ..+.|.||||
T Consensus 191 ~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDdV 260 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDDV 260 (477)
T ss_pred ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCce
Confidence 99999999987654332 34 6899999 8899999999888888 6655 6699999999
Q ss_pred ccCcCcc--ccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccccc
Q 007504 248 RIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (601)
Q Consensus 248 ~VP~~~l--L~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~ 325 (601)
+||.+++ +|.... .|.++. .+ ..++..+..++|.+..+++.++.|+.. .+||. ++.
T Consensus 261 ~VPwe~VF~~g~~e~---a~~~f~---------~~--~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi~ 318 (477)
T TIGR02309 261 LVPWERIFILGDVEL---CNNAYA---------AT--GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GAD 318 (477)
T ss_pred eccHHHhhhcCCHHH---HHHHHH---------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Ccc
Confidence 9999999 663100 022221 11 123556788889999999999999999 99999 899
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007504 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (601)
Q Consensus 326 ~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~ 405 (601)
++|.+|++|++|++.+++++++.+.+.+..+. +...........++++|.++++...++. +|+|.+||.|+.
T Consensus 319 ~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~-------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 319 GFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE-------NAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------CCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 99999999999999999999999988665431 1111110124568999999999999995 999999999997
Q ss_pred c
Q 007504 406 C 406 (601)
Q Consensus 406 ~ 406 (601)
.
T Consensus 391 ~ 391 (477)
T TIGR02309 391 T 391 (477)
T ss_pred e
Confidence 4
No 45
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.84 E-value=6.4e-20 Score=168.66 Aligned_cols=145 Identities=27% Similarity=0.225 Sum_probs=134.6
Q ss_pred hHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007504 276 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355 (601)
Q Consensus 276 ~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~ 355 (601)
.+...+..+|+.+++.++|.++.+++.+++|++.|++||+ |+.++|.++++++++.+.+++++++++++...+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 6677889999999999999999999999999999999998 999999999999999999999999999998876
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHH
Q 007504 356 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA 435 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia 435 (601)
++ +. .....++++|.++++.+.++++.|++++||.||+.++++++++||++.+.+++|++++++..||
T Consensus 79 ~~-------~~-----~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia 146 (150)
T PF00441_consen 79 DA-------GQ-----NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIA 146 (150)
T ss_dssp HT-------TS-----STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHH
T ss_pred cc-------cc-----ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHH
Confidence 52 11 1256688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007504 436 RFLM 439 (601)
Q Consensus 436 ~~ll 439 (601)
+.+|
T Consensus 147 ~~~l 150 (150)
T PF00441_consen 147 RRLL 150 (150)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 46
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.58 E-value=1.2e-14 Score=129.30 Aligned_cols=116 Identities=39% Similarity=0.629 Sum_probs=93.8
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCC-CcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHH----HH
Q 007504 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRK-DNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEE----AS 87 (601)
Q Consensus 17 ~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~----gg 87 (601)
|+++|+.+|+|++++.+.|+.+.+++.++|.|.. ....+++|++.+..+.++..++++.+..++|. +.+ +.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGL 80 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 7999999999999999999999999999999998 66689999999999999999999999999984 332 22
Q ss_pred HHhhhcCCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccce
Q 007504 88 MLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (601)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~ 132 (601)
....+++.+.|+.+|++||.++|..+||+||+++|||++.+.+||
T Consensus 81 ~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 81 LMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 346677888999999999999999999999999999999999875
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.42 E-value=2.8e-13 Score=100.29 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.2
Q ss_pred EEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEE
Q 007504 134 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 192 (601)
Q Consensus 134 ~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~ 192 (601)
|||+|||++|+|+..++|+|+++ +++|+|| |.|+||++ +..||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 78999999999999999999999 7889999 99999999 8999999999997
No 48
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.31 E-value=2e-11 Score=110.01 Aligned_cols=130 Identities=17% Similarity=0.049 Sum_probs=108.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhccc--cCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007504 286 QTIVADASCALSRAVCIATRYSAVRRQ--FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363 (601)
Q Consensus 286 ~~~~a~~~g~~~~al~~a~~Ya~~R~q--fg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 363 (601)
+.+++.++|+++++++.+++|++.|.. .+. ++.+.+.+|.+++++.+.+++++...+.++..+++....
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~-- 71 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADA-- 71 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 357899999999999999999998887 233 899999999999999999999999999998877654332
Q ss_pred cCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcc
Q 007504 364 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGD 426 (601)
Q Consensus 364 ~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~ 426 (601)
++.. .++........|.++++.+.++++.+++.+||.|+...+|++|+|||++....+...
T Consensus 72 -g~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 72 -GEEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp -T-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred -cCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 2221 245566778889999999999999999999999999999999999999987766543
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.49 E-value=1.4e-05 Score=86.70 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=136.3
Q ss_pred HHHhhHHHHhcccceeEEeccCCCCC-C----CCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEE-EEE
Q 007504 118 QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YAR 191 (601)
Q Consensus 118 q~~~~l~~l~~g~~~~~~a~tE~~~G-s----d~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV-~A~ 191 (601)
--.+|+..+.+..+..+.++|.|-.- | .....-...+. ..++|.||+ |.|...|+ +..+|.++| ...
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCc
Confidence 35689999999999999999987421 1 11112222222 226899999 99999998 889998888 444
Q ss_pred Ec--cCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcC----C-CCCCC-------CccceEEEecccccCcCccccc
Q 007504 192 LI--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF----G-NGAYN-------TMDNGVLRFEHVRIPRNQMLMR 257 (601)
Q Consensus 192 ~~--~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~----G-~~~~~-------~~~~~~v~fd~v~VP~~~lL~~ 257 (601)
.. .+.++.. ..|.|| .++|||++--....- + ...+. +-.-+-|.||||+||-++++.
T Consensus 210 ~~~~~~d~dyA-vaFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~- 280 (519)
T TIGR02310 210 AQIIGDNDDFA-LMFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI- 280 (519)
T ss_pred ccccCCCCCeE-EEEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee-
Confidence 31 1222232 479999 889999887432211 0 00011 112368999999999999985
Q ss_pred cccccCCCcee-ccCcchhhHHhHHHHHHH-HhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHH
Q 007504 258 VSQVTREGKYV-QSNVPRQLLYGTMVYVRQ-TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 335 (601)
Q Consensus 258 ~~~v~~~g~~~-~~~~~~~~~~~~l~~~r~-~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la 335 (601)
++++.....+. ..... ..+..-...|. ..+-..+|++..+ +++ -| +..|+.+|.+|+
T Consensus 281 ~gd~e~~~~~~~~~~~~--~~~~~q~~~r~~~k~dfl~G~a~~~----ae~------~G---------~~~~~hVqekl~ 339 (519)
T TIGR02310 281 YRDFERCRTWAQYGGFA--RLFPMQACTRLAVKLDFITGLLHKA----LQC------TG---------VLEFRGVQAQMG 339 (519)
T ss_pred cCCHHHHHhHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHH------hC---------cccchHHHHHHH
Confidence 11111001011 00000 00000001111 1111222222222 121 12 457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007504 336 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS-TLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (601)
Q Consensus 336 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG 401 (601)
++++..+.+++....+...- ...... -.++ ...+..+|.+..+..-++.+.+.+.+||
T Consensus 340 Eli~~~E~~~a~~~Aa~~~~-------~~~~~G~~~P~-~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 340 EVVAWRNLFWTLTDAMAGSA-------YQWKNGAQLPS-AQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeeC-HHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 99999999887765542211 111111 1122 3345678999999999999999876664
No 50
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.43 E-value=1.6e-05 Score=83.33 Aligned_cols=254 Identities=16% Similarity=0.163 Sum_probs=144.8
Q ss_pred CCCHH--HHHhhHHHHhcccceeEEeccCCCCC-C----CCC--CCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCC
Q 007504 113 QGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183 (601)
Q Consensus 113 ~Gt~e--q~~~~l~~l~~g~~~~~~a~tE~~~G-s----d~~--~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~A 183 (601)
+|++= --.+|+..+.+.....+-|+|.|-.- | -.. .+-...+. ...+|.|++ |.|..+|+ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 55543 34689999999999999999987421 1 111 22223322 226899999 99999999 8899
Q ss_pred cEEEEE-EEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCc-CCC----CCCCC-------ccceEEEeccccc
Q 007504 184 THAVVY-ARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK-FGN----GAYNT-------MDNGVLRFEHVRI 249 (601)
Q Consensus 184 d~~lV~-A~~~~~-~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~-~G~----~~~~~-------~~~~~v~fd~v~V 249 (601)
|..+|+ .+.-.. .++. -..|.|| .+.|||.+--.... .+. +.... ..-+.|.||||+|
T Consensus 198 dei~V~Pt~~~~~~d~df-Av~FaiP-------~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfV 269 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDF-AVAFAIP-------MDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFV 269 (493)
T ss_pred ceEEEeeccccCCCCCce-EEEEEcc-------cCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEeccccc
Confidence 999988 433222 2223 3489999 88999876543211 110 00000 1235699999999
Q ss_pred CcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHH
Q 007504 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (601)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (601)
|-++++- |.++..--... .......+.|...+..-.+-+.- -+...|...+. - =+.+|+.
T Consensus 270 PWERVf~-y~d~~~~~~~~-------~~~~Fa~~~~~q~~~~k~~k~d~--i~G~~~~~~~~-~---------Gv~~~~h 329 (493)
T COG2368 270 PWERVFI-YRDLERAYAWY-------AVSGFARLHRQQAVGRKAVKLDF--ILGAAYLIAET-N---------GVEEFRH 329 (493)
T ss_pred chhheee-eccHHHHHHHH-------HHHHHHHHhhhhhhhhhHHHHHH--HHHHHHHHHHh-h---------Cccchhh
Confidence 9999884 21111000000 00011111222111111111111 11111211111 1 2568999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 330 ~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
+|.+|.+|++..+.+.++...++..-. .......-.....+...|.++...-.++.+.+.++.||.-.+..+
T Consensus 330 Iq~kl~Emi~~~e~~~al~~Aa~~~a~-------~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS 401 (493)
T COG2368 330 IQEKLGEMIALLELMWALSDAAAEEAQ-------KNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLPS 401 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecCc
Confidence 999999999999988877665533211 111111112345567889999999999999999999886555444
No 51
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.31 E-value=3e-07 Score=79.86 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC--------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~-------- 94 (601)
|+++.++++++++|+.++-. + .....+....+...+|+.+.+.|| |+++||.+.+...
T Consensus 1 t~~~~~l~~~~~~~~~~~~~--~-------~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l 71 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIA--P-------HAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEEL 71 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTH--H-------HHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHch--H-------HHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhh
Confidence 57889999999999976321 0 011121112344668999999997 5677775543211
Q ss_pred ----Cc--hhhHhhhhchHHHHccCCCHHHHHhhHHHHhccc
Q 007504 95 ----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (601)
Q Consensus 95 ----~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (601)
.+ ..+.+|.++++.+|..+|++|||++|||++.+||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 72 ARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 12 2345676778889999999999999999999986
No 52
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.43 E-value=0.00092 Score=66.47 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=74.6
Q ss_pred HHHHhhHHHHhcccceeEEeccCCCC--CCCC----CCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEE
Q 007504 117 EQHQKWLPLAYKMEIIGCYAQTELGH--GSNV----QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYA 190 (601)
Q Consensus 117 eq~~~~l~~l~~g~~~~~~a~tE~~~--Gsd~----~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A 190 (601)
+--.+|+..+.+..+..+.+++.|-. +... ..+-...+.. ..+|.||+ |.|...|+ +..||.++|+-
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p 195 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFP 195 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEee
Confidence 34568999999999999999999852 1111 1122333322 26899999 99999998 89999999975
Q ss_pred EEccC-CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCC--CCC--C-----ccceEEEecccccCcCccc
Q 007504 191 RLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG--AYN--T-----MDNGVLRFEHVRIPRNQML 255 (601)
Q Consensus 191 ~~~~~-~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~--~~~--~-----~~~~~v~fd~v~VP~~~lL 255 (601)
-..-. +...=-.+|.|| .++|||++--........ .+. . -.-+.|.||||+||.++++
T Consensus 196 ~~~~~~~d~dyAv~FavP-------~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 196 TRAMRPGDEDYAVAFAVP-------MNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSSTTCCGGG-EEEEEE-------TT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred ccCCCCCCCceEEEEEcc-------CCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 43212 122224589999 889999877543322200 011 0 1136899999999999875
No 53
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=82.81 E-value=7.6 Score=37.45 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=53.4
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007504 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (601)
Q Consensus 324 i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G 403 (601)
+..|+.||.+|++++...+.++++...+... ...........-......+|.+..+...++++.+.+++||.=
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~-------a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAE-------AEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhc-------CccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 4679999999999999999998877654221 111111111122345678899999999999999999999865
Q ss_pred ccc
Q 007504 404 YLC 406 (601)
Q Consensus 404 ~~~ 406 (601)
.+.
T Consensus 117 i~~ 119 (205)
T PF03241_consen 117 ITL 119 (205)
T ss_dssp TC-
T ss_pred eeC
Confidence 553
No 54
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=80.48 E-value=13 Score=41.25 Aligned_cols=85 Identities=22% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHh
Q 007504 300 VCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAG 379 (601)
Q Consensus 300 l~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (601)
+-.+++|.-.|. |+ .|.+-|.+..||+++.+.+||+...+.++.....+ + .+........
T Consensus 418 ~~~~v~~~~~~~--~~-------~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-------~----~~~~~~e~~l 477 (520)
T PTZ00457 418 FGNAVEATFVRS--GS-------QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-------G----LPSAKVEGEL 477 (520)
T ss_pred HHHHHHHHHHHH--Hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------C----CCchHHHHHH
Confidence 444555555443 34 78899999999999999999998877777554431 1 1222223457
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Q 007504 380 LKSLTTTATADGIEECRKLCGGHGYL 405 (601)
Q Consensus 380 aK~~~t~~a~~~~~~~~q~~GG~G~~ 405 (601)
+++||.+...++-..+-+++.. ++.
T Consensus 478 a~~fc~~a~~rv~~~~~~~~~~-~~~ 502 (520)
T PTZ00457 478 ASAFIAMAVSRARQLSEESCNV-GKT 502 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-Ccc
Confidence 8999999999998888888876 554
No 55
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=72.20 E-value=48 Score=36.67 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=54.8
Q ss_pred cccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007504 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (601)
Q Consensus 323 ~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG 401 (601)
-|.+-|.+-+|||+.+..+|++.+...++.+.+.. .++....+...++++|++....+...+-++-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-----------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-----------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999999999999999999888888766542 224455667788999999998888887777666
No 56
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.67 E-value=1.9e+02 Score=22.52 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=27.7
Q ss_pred HHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 007504 564 VHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 598 (601)
Q Consensus 564 i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~ 598 (601)
.-...|...+.|-++..|.-...+.+.+.+..|+|
T Consensus 45 ~m~~iG~~w~~~~~~v~~e~~as~~~~~~l~~l~p 79 (79)
T PF02607_consen 45 AMEEIGELWEEGEISVAQEHLASEAMRAALSILKP 79 (79)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhCC
Confidence 33567888899999999988888888888888776
No 57
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=24.08 E-value=41 Score=35.50 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhccccccccCChhhhcccccccc--ccCcchHHHHHHHHHHHHHHHHhhcCC
Q 007504 384 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYG 448 (601)
Q Consensus 384 ~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~--~~~G~~~vl~~~ia~~ll~~~~~~~~~ 448 (601)
++..|.++.-+.+++||+|||+- ++|+....--+ -|.|+ -.-|.++...+++..+++-..
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYLi----~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYLL----SQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchHH----HHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCC
Confidence 34555566667889999999984 44444332222 46776 677888889999888765443
Done!