Query 007504
Match_columns 601
No_of_seqs 384 out of 2548
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ddh_A Acyl-COA oxidase; beta 100.0 1.9E-96 7E-101 826.7 62.0 592 1-599 1-602 (661)
2 1w07_A Acyl-COA oxidase; oxido 100.0 7.5E-96 3E-100 823.3 66.2 597 1-599 1-599 (659)
3 2z1q_A Acyl-COA dehydrogenase; 100.0 4.2E-59 1.4E-63 518.3 42.3 472 27-567 28-524 (577)
4 3owa_A Acyl-COA dehydrogenase; 100.0 2.9E-58 1E-62 511.3 43.9 501 27-589 33-567 (597)
5 2jif_A Short/branched chain sp 100.0 4.7E-55 1.6E-59 466.7 30.6 358 25-441 27-403 (404)
6 2uxw_A VERY-long-chain specifi 100.0 1.2E-53 4E-58 475.7 42.6 488 33-581 56-584 (607)
7 3pfd_A Acyl-COA dehydrogenase; 100.0 2E-55 6.8E-60 468.4 25.3 364 17-440 11-393 (393)
8 2d29_A Acyl-COA dehydrogenase; 100.0 2.1E-54 7.3E-59 459.6 31.3 356 27-440 7-385 (387)
9 1ukw_A Acyl-COA dehydrogenase; 100.0 1.7E-54 5.9E-59 459.1 30.1 355 27-440 5-378 (379)
10 1buc_A Butyryl-COA dehydrogena 100.0 3.1E-54 1.1E-58 457.8 31.4 356 27-439 5-382 (383)
11 2vig_A Short-chain specific ac 100.0 2.9E-54 9.9E-59 459.1 30.8 360 27-444 6-384 (391)
12 1ivh_A Isovaleryl-COA dehydrog 100.0 1.8E-54 6.2E-59 461.1 28.5 359 26-442 12-393 (394)
13 1egd_A Medium chain acyl-COA d 100.0 3E-54 1E-58 459.8 29.2 358 27-442 16-394 (396)
14 3p4t_A Putative acyl-COA dehyd 100.0 2.6E-54 8.8E-59 461.2 28.6 362 17-438 18-399 (403)
15 3r7k_A Probable acyl COA dehyd 100.0 3.1E-54 1.1E-58 460.5 28.7 353 27-438 29-401 (403)
16 2dvl_A Acyl-COA dehydrogenase; 100.0 3.8E-54 1.3E-58 455.3 28.6 350 28-440 4-372 (372)
17 2pg0_A Acyl-COA dehydrogenase; 100.0 1.2E-53 4E-58 453.6 31.9 354 27-438 10-383 (385)
18 1rx0_A Acyl-COA dehydrogenase 100.0 1.4E-53 4.7E-58 454.1 30.7 356 26-440 18-392 (393)
19 4hr3_A Putative acyl-COA dehyd 100.0 1.5E-53 5.2E-58 457.2 29.6 365 21-443 5-413 (415)
20 3ii9_A Glutaryl-COA dehydrogen 100.0 3.2E-54 1.1E-58 459.5 23.4 355 26-440 18-391 (396)
21 3nf4_A Acyl-COA dehydrogenase; 100.0 7.3E-54 2.5E-58 455.6 26.1 353 27-440 16-387 (387)
22 2ix5_A Acyl-coenzyme A oxidase 100.0 2.2E-53 7.4E-58 457.4 27.4 353 26-440 54-424 (436)
23 2eba_A Putative glutaryl-COA d 100.0 2.8E-53 9.4E-58 450.7 27.7 351 27-440 11-381 (385)
24 3sf6_A Glutaryl-COA dehydrogen 100.0 5.6E-53 1.9E-57 450.9 29.7 351 26-440 29-398 (403)
25 3swo_A Glutaryl-COA dehydrogen 100.0 5E-53 1.7E-57 450.8 27.8 364 13-440 11-393 (399)
26 2wbi_A Acyl-COA dehydrogenase 100.0 3.1E-52 1E-56 448.5 32.9 377 16-444 14-422 (428)
27 3mpi_A Glutaryl-COA dehydrogen 100.0 1.6E-52 5.6E-57 446.7 25.5 354 26-438 4-382 (397)
28 1siq_A GCD, glutaryl-COA dehyd 100.0 7.8E-52 2.7E-56 440.6 27.7 354 26-440 13-384 (392)
29 1r2j_A Protein FKBI; polyketid 100.0 3.7E-52 1.3E-56 438.9 23.9 318 69-440 26-363 (366)
30 3mkh_A Nitroalkane oxidase; ox 100.0 2.4E-50 8.1E-55 435.4 31.2 369 27-441 7-417 (438)
31 2c12_A Nitroalkane oxidase; ox 100.0 2.6E-48 8.8E-53 419.5 31.0 364 27-439 6-418 (439)
32 3mxl_A Nitrososynthase; flavin 100.0 6.3E-48 2.2E-52 411.1 21.2 359 26-440 8-393 (395)
33 3m9v_A FAD-dependent oxidoredu 100.0 9.2E-47 3.1E-51 407.5 21.4 366 17-440 12-404 (439)
34 2or0_A Hydroxylase; APC7385, r 100.0 3.7E-46 1.3E-50 399.7 21.9 352 28-440 19-401 (414)
35 2rfq_A 3-HSA hydroxylase, oxyg 100.0 7E-45 2.4E-49 387.4 24.9 351 33-440 11-386 (394)
36 3djl_A Protein AIDB; alpha hel 100.0 1E-44 3.5E-49 397.7 26.6 324 70-441 89-442 (541)
37 2jbr_A P-hydroxyphenylacetate 100.0 3.9E-45 1.3E-49 392.7 21.4 352 33-440 39-414 (422)
38 2yyk_A 4-hydroxyphenylacetate- 100.0 1.2E-33 3.9E-38 306.1 23.7 272 115-438 122-422 (481)
39 1u8v_A Gamma-aminobutyrate met 100.0 1.1E-33 3.7E-38 306.7 21.6 275 109-433 119-421 (490)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 5.5E-29 1.9E-33 269.1 25.1 281 113-439 127-431 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.9 1.6E-21 5.4E-26 211.2 26.7 253 117-416 134-400 (517)
42 3owa_A Acyl-COA dehydrogenase; 87.9 3.4 0.00011 45.3 12.3 122 298-440 469-591 (597)
43 2uxw_A VERY-long-chain specifi 51.0 1.1E+02 0.0039 33.1 12.5 88 323-441 509-596 (607)
No 1
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=1.9e-96 Score=826.68 Aligned_cols=592 Identities=43% Similarity=0.735 Sum_probs=510.2
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcc
Q 007504 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (601)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (601)
|+| ||++||++++||+++|+.+|+|++++.++|+++++++.++|.|.......+++++.++....+...+.+.+.++|
T Consensus 1 ~~~--~l~~er~~~~f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 78 (661)
T 2ddh_A 1 MNP--DLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYG 78 (661)
T ss_dssp CCH--HHHHHHHHCSSCHHHHHHHHHTSHHHHHHHHHHHHHHHTCGGGCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCh--HHHHHHhhCCCCHHHHHHHHCCChhHHHHHHHHHHHHhcCcccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 556 999999999999999999999999999999999999999998876555568998998888888777777667788
Q ss_pred CCHHH-HHHHhhhcCC--chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeC
Q 007504 81 LSEEE-ASMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (601)
Q Consensus 81 ~~~~~-gg~~~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~ 157 (601)
+.... ......+++. +.|+.+|+++++++|..+||++|+++|||++.+|++++|||+|||+||||+.+++|+|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~ 158 (661)
T 2ddh_A 79 ISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDP 158 (661)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred CCCchHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcC
Confidence 75322 1112222222 57788998899999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCc
Q 007504 158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 237 (601)
Q Consensus 158 ~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~ 237 (601)
++|+|+||||+++|+|+||+|++.+||+++|+|++..+++++|+++|+||+||+++|.+.|||+|+++|+|+| ++++
T Consensus 159 ~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~G---l~g~ 235 (661)
T 2ddh_A 159 KTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEM 235 (661)
T ss_dssp TTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSS---CTTC
T ss_pred CCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCccccc---CCCC
Confidence 8899999999999999999986789999999999987666789999999999999999999999999999999 9999
Q ss_pred cceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007504 238 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 317 (601)
Q Consensus 238 ~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~ 317 (601)
++++|.||||+||++++|++++.|.++|.+..+.... ..+..|..+|+.+++.++|+++++++++++|+++|+|||+++
T Consensus 236 ~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~ 314 (661)
T 2ddh_A 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQ 314 (661)
T ss_dssp CCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSST
T ss_pred cceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCC
Confidence 9999999999999999999888887788876533233 567788899999999999999999999999999999999977
Q ss_pred CCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007504 318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 397 (601)
Q Consensus 318 ~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q 397 (601)
+.+|.||++||.+|++|+++.+.+++++++++++++.+++.......++....++.+..++++|+++++.+.++++.|+|
T Consensus 315 ~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q 394 (661)
T 2ddh_A 315 SEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRM 394 (661)
T ss_dssp TSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999998888643322222332233467888999999999999999999999
Q ss_pred HhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchh-HhhhhcC--Ccccc
Q 007504 398 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHC--GVQKA 474 (601)
Q Consensus 398 ~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~ 474 (601)
+|||+||+.++++++++||++..++++|+|+++++++|+.+|+.+.+..++....++..||.+.. .....++ ...+.
T Consensus 395 ~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 474 (661)
T 2ddh_A 395 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTM 474 (661)
T ss_dssp HTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCCCGGGGGGGGCCC--------------
T ss_pred HhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHhhhhhhccccccccccch
Confidence 99999999999999999999999999999999999999999999988777766667899997643 2111111 11245
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHH
Q 007504 475 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 550 (601)
Q Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~ 550 (601)
.++.||++++++|++|+++++..+++++++ +++.+++||+++++++++|+||+++++++.|++.|++ +++++++.
T Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~a~~~~~~~~~f~~~~~~-~~~~~~~~ 553 (661)
T 2ddh_A 475 VDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPK-IQDKAVQA 553 (661)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHGGG-CSSHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhHHH
Confidence 778999999999999999999988888743 4567899999999999999999999999999999987 88899999
Q ss_pred HHHHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 551 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 551 vL~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
+|.+||.||+|+.|+++++||+++||||++|++.|++.+.+||.+|||+
T Consensus 554 ~L~~l~~L~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~ 602 (661)
T 2ddh_A 554 VLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPN 602 (661)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997
No 2
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=7.5e-96 Score=823.30 Aligned_cols=597 Identities=81% Similarity=1.262 Sum_probs=513.9
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcc
Q 007504 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (601)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (601)
|.|++||++||++++||+++|..++++++|+.++|+++++|+.++|.+........+..+.+.........+.....++|
T Consensus 1 ~~~~~~l~~er~~~~f~~~~l~~~~~~~~e~~~lr~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G 80 (659)
T 1w07_A 1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIELR 80 (659)
T ss_dssp -CCCCTTHHHHTTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHccCCCCHHHHHHHHCCChHHHHHHHHHHHHHhcCcccccCCccCCChHHHHHHHHHHHHHHHHhHHHhC
Confidence 77889999999999999999999999889999999999999999988753222334444443333322222222223445
Q ss_pred CCHHHHHHHhhhcCCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007504 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (601)
Q Consensus 81 ~~~~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~ 160 (601)
+...........++.+.++.+|+++++++|..+||++|+++|||++++|++++|+|+|||+||||+.+++|+|++|+++|
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~ 160 (659)
T 1w07_A 81 LNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTD 160 (659)
T ss_dssp CCHHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTT
T ss_pred CCchHHHHHHHHhccchhhhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCC
Confidence 43222222223345555577888899999999999999999999999999999999999999999999999999998779
Q ss_pred eEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccce
Q 007504 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (601)
Q Consensus 161 ~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~ 240 (601)
+|+||||+++|+|+||+|++..||+++|+|++..+++++|+++|+||+|++++|.+.|||+|+++|+++|.+++++++++
T Consensus 161 g~vLntP~~~G~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~ 240 (659)
T 1w07_A 161 EFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240 (659)
T ss_dssp EEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCE
T ss_pred EEEEcCCCCCeEEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCce
Confidence 99999999999999999856899999999999876667799999999999899999999999999999996667899999
Q ss_pred EEEecccccCcCccccccccccCCCceecc-CcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 007504 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQS-NVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGG 319 (601)
Q Consensus 241 ~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~-~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~ 319 (601)
.|.||||+||++++|++++.|.++|.++.. ..++ ..+..|..+|+.+++.++|+++++++++++|+++|+|||++++.
T Consensus 241 ~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~~-~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 319 (659)
T 1w07_A 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQ-LVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGG 319 (659)
T ss_dssp EEEESSEEEEGGGBCCSSEEECTTCCEEECSSCGG-GCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---C
T ss_pred EEEeccEEECHHHhcCCcCccCCCCceecCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 999999999999999998888888888763 2222 45677889999999999999999999999999999999987777
Q ss_pred CcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 007504 320 PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 399 (601)
Q Consensus 320 ~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~ 399 (601)
+|.||++||.+|++|+++.+.+++++++++++++.+++.......++.....+.+..++++|+++++.+.+++++|+|+|
T Consensus 320 ~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~ 399 (659)
T 1w07_A 320 IETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLC 399 (659)
T ss_dssp CCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999988876655444444333346788899999999999999999999999
Q ss_pred ccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHhhhhcCCccccCCCCC
Q 007504 400 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLN 479 (601)
Q Consensus 400 GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 479 (601)
||+||++++++++++||++..++++|+|+++++++++.+|+.+++..++.++.++..||.+.......+....+..++.|
T Consensus 400 GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 479 (659)
T 1w07_A 400 GGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLN 479 (659)
T ss_dssp GGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHTTTTTSCCCCGGGGGGGGHHHHTSCCCCCCSGGGGGC
T ss_pred cCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhhhhhccccccCchhhcCC
Confidence 99999999999999999999999999999999999999999998877777777899999876554333233223467899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHH
Q 007504 480 PSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIP-GKGVKPILEILCHI 558 (601)
Q Consensus 480 ~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~-~~~~~~vL~~l~~L 558 (601)
|++++++|++|+++++..+.+++++.++.+++||+++++++++|+||+++++++.|++.|++ ++ +++++.+|.+||.|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~a~a~~~~~~~~~f~~~~~~-~~~~~~~~~~l~~l~~l 558 (659)
T 1w07_A 480 PDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKFIAKLEQ-DIGGKGVKKQLNNLCYI 558 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Confidence 99999999999999999999999877777899999999999999999999999999999987 77 89999999999999
Q ss_pred HhHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007504 559 YALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 599 (601)
Q Consensus 559 ~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~~~l~~~lr~~ 599 (601)
|+|+.|+++++||+++||||++|++.|++.+.+||.+|||+
T Consensus 559 ~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~ 599 (659)
T 1w07_A 559 YALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQVRPN 599 (659)
T ss_dssp HHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997
No 3
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-59 Score=518.29 Aligned_cols=472 Identities=18% Similarity=0.198 Sum_probs=367.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhh---------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS--------- 92 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~--------- 92 (601)
-++|+.++++.+++|+.++.... .++...........+|+.+.+.|| |+++||.+.+.
T Consensus 28 ~~~e~~~l~~~~~~~~~~~~~p~--------~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~ee 99 (577)
T 2z1q_A 28 FDESVKEIARTTRTFVEREVLPL--------LERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEE 99 (577)
T ss_dssp CCHHHHHHHHHHHHHHHTTTHHH--------HHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCchh--------HHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHH
Confidence 35788999999999997632100 011100001234678999999997 67888765332
Q ss_pred cCC--c--hhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 93 VDE--P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 93 ~~~--~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
+.. + ..+.+|.+++..+|..+||++||++|||++++|++++|+++|||++|||+.+++|+|++++++++|+||
T Consensus 100 l~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLn--- 176 (577)
T 2z1q_A 100 LSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILN--- 176 (577)
T ss_dssp HTTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE---
T ss_pred HhhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEE---
Confidence 111 1 224556666677899999999999999999999999999999999999999999999997768899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+|||| +..||+++|+|+++ + .|+++|+|| .+.|||++++.++++| +++++++.|.||||+
T Consensus 177 --G~K~~it~-a~~Ad~~~V~Ar~~--g--~gis~flVp-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~ 239 (577)
T 2z1q_A 177 --GVKQWISN-AGFAHLFTVFAKVD--G--EHFTAFLVE-------RDTPGLSFGPEEKKMG---IKASSTRQVILEDVK 239 (577)
T ss_dssp --EEEEEEET-TTTCSEEEEEEEET--T--TEEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEE
T ss_pred --EEeeCCCC-CCccCEEEEEEEeC--C--CeeEEEEEe-------CCCCCeEecCCCCCCC---CCCCceeEEEeccee
Confidence 99999999 88999999999974 2 689999999 7799999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 240 VP~~~llg~------~g~g~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~-------pi~~~q 300 (577)
T 2z1q_A 240 VPVENVLGE------IGKGHK------IAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGR-------PIGRFG 300 (577)
T ss_dssp EEGGGEESC------TTCTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSS-------BGGGSH
T ss_pred ccHHHccCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------chhhhH
Confidence 999999984 565554 5667788899999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC------hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST------LPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~ 402 (601)
.+|++|++|.+.+++++++++++++.++.... .+... ..+.+..++++|+++++.+.+++++|+|+|||+
T Consensus 301 ~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~----~~~~~~~~~~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~ 376 (577)
T 2z1q_A 301 LIQQKLGEMASRIYAAESAVYRTVGLIDEALL----GKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGY 376 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccccchhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 99999999999999999999999888765321 01000 124567789999999999999999999999999
Q ss_pred cccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchh-HhhhhcCCccccCCCCCHH
Q 007504 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHCGVQKAEDWLNPS 481 (601)
Q Consensus 403 G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 481 (601)
||+++++++++|||++...+++|+|++++.++++.+++...+ +. .....|+.+.. .+.+ + .. ...+.+..
T Consensus 377 G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~~~~---~~--l~~~~~~~~~~~~~~~-~--~~-~~~l~~~~ 447 (577)
T 2z1q_A 377 GYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRRALK---GQ--LPLMQAAQRLQKELLE-P--SF-EEPEDLEL 447 (577)
T ss_dssp GGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC------------------------------------CCHHH
T ss_pred eecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHHHhh---cC--CcHHHHHHHHHHHHcC-C--CC-ChhHHHHH
Confidence 999999999999999999999999999999999999865332 11 11123444332 1111 0 00 11233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhH
Q 007504 482 AILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYAL 561 (601)
Q Consensus 482 ~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~~~~~~~~~vL~~l~~L~al 561 (601)
.+++.+..+....+..+..++..... ..+..+.++|++|++.|++..++.++++. .+. +..|.+++..+++
T Consensus 448 ~~l~~~~~~~~~~~~~~~~~~~~~l~------~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~-~~~l~~~~~~~~~ 518 (577)
T 2z1q_A 448 HQVQNLKKLALMVAGLAVQKYGQGVE------EEQEVLGAVADILIDAYAAESALLRARRL--GGL-APVLARIYLAQAL 518 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGG------GCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc-HHHHHHHHHHHHH
Confidence 56777777777777666666543211 12578899999999999999999999874 233 6677777777888
Q ss_pred HHHHhh
Q 007504 562 HLVHKH 567 (601)
Q Consensus 562 ~~i~~~ 567 (601)
..|+..
T Consensus 519 ~~~~~~ 524 (577)
T 2z1q_A 519 DRAQAG 524 (577)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888888
No 4
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=2.9e-58 Score=511.27 Aligned_cols=501 Identities=18% Similarity=0.228 Sum_probs=376.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHH-HHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKN-TLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------ 94 (601)
-++||.++++++++|+.++.. +. .+..+. .......+|+.+.++|| |+++||.+.+...
T Consensus 33 lt~eq~~l~~~vr~f~~~~~~-p~--------~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~E 103 (597)
T 3owa_A 33 FSSEHKMIAKTTEDFIVNEVL-PE--------LEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAE 103 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHTG-GG--------HHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCc-hh--------HHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence 357899999999999987432 10 011111 12345678999999997 6888886644321
Q ss_pred ---C----chhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 95 ---E----PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 95 ---~----~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
. ..++..|..+....|..+|+++||++|||++++|++++|+++|||++|||+.+++|+|++++++++|+||
T Consensus 104 el~~~~~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLn-- 181 (597)
T 3owa_A 104 KFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLN-- 181 (597)
T ss_dssp HHGGGTHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE--
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEe--
Confidence 1 1234456556666788999999999999999999999999999999999999999999998778899999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+||+| +..||+++|+|+++. .|+++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 182 ---G~K~~is~-a~~Ad~~lV~Art~~----~g~s~flV~-------~~~pGv~v~~~~~~~G---lrgs~t~~v~fddV 243 (597)
T 3owa_A 182 ---GEKQWITN-SAFADVFIVYAKIDG----EHFSAFIVE-------KDYAGVSTSPEEKKMG---IKCSSTRTLILEDA 243 (597)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEEETT----TEEEEEEEE-------TTSTTEEECCCCCBSS---CTTSCEEEEEEEEE
T ss_pred ---eEEEEeCC-CccCCEEEEEEEeCC----CceEEEEEe-------CCCCCeEEeccccccc---CCCCCceEEEEece
Confidence 99999999 899999999999742 479999999 7889999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 244 ~VP~~~lLG~------~g~G~~------~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~-------pi~~~ 304 (597)
T 3owa_A 244 LVPKENLLGE------IGKGHI------IAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQ-------PIARF 304 (597)
T ss_dssp EEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred eecHHHhcCc------ccchHH------HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------ccccc
Confidence 9999999984 455443 5677888999999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-----CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND--F-----STLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~G 400 (601)
|.+|++|++|.+.+++++++++++++.+++........+ . ....+....++++|+++++.+.+++++|+|+||
T Consensus 305 q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~G 384 (597)
T 3owa_A 305 PLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHG 384 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999998876431100000 0 000134667899999999999999999999999
Q ss_pred cccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHhhhhcCC-cccc--CCC
Q 007504 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCG-VQKA--EDW 477 (601)
Q Consensus 401 G~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~--~~~ 477 (601)
|+||+++++++++|||++...+++|+|++++..|++.+|+.+.+ +..| ++.......+.... .+.. ...
T Consensus 385 G~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~~~k---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 456 (597)
T 3owa_A 385 GYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMK---GELP-----LLQKAQKLQEELMMMMPEEVGDEP 456 (597)
T ss_dssp GGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHT---TSSC-----HHHHHHHHHHHHTTC---CCCSST
T ss_pred CccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHHHhc---CCcc-----hhHHHHHHHHHHhhcCCCcccccc
Confidence 99999999999999999999999999999999999999987643 2222 12222211111000 0101 111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C----CCCChHHHH
Q 007504 478 LNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD-I----PGKGVKPIL 552 (601)
Q Consensus 478 ~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~-~----~~~~~~~vL 552 (601)
+.. -...++.. .++...+...+.. +.+..+.+.+..|.++|+.-++.|++++.+.+.+++ | +..+.+..|
T Consensus 457 l~~--~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3owa_A 457 LAL--QKYLVNNA-KKIGLMVAGLAAQ--KYGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLY 531 (597)
T ss_dssp THH--HHHHHHHH-HHHHHHHHHHHHH--HHGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHH--HHHHHHHH-HHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHH
Confidence 111 11111111 1122212211111 134566667888999999999999999999998764 2 233456678
Q ss_pred HHHHHHHhHHHHHhhhhHHHhcCCCCHHHHHHHHHHH
Q 007504 553 EILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQL 589 (601)
Q Consensus 553 ~~l~~L~al~~i~~~~~~fl~~~~ls~~~~~~l~~~~ 589 (601)
.++++.-|..+|+......+ ..+-.++..+.+...+
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 567 (597)
T 3owa_A 532 TEVFCQEAFNEIEAHAKETL-IAVENGDMLRMMLSSL 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhccchHHHHHHHHH
Confidence 88888889999998755544 3344444444433333
No 5
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=4.7e-55 Score=466.72 Aligned_cols=358 Identities=19% Similarity=0.258 Sum_probs=304.5
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-----
Q 007504 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD----- 94 (601)
Q Consensus 25 ~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~----- 94 (601)
+.-++||.++++++++|+++.... .....+.......++|+.+.+.|| |+++||.+.++..
T Consensus 27 ~~~~~e~~~l~~~~r~~~~~~~~p---------~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~ 97 (404)
T 2jif_A 27 QTFTDEEMMIKSSVKKFAQEQIAP---------LVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVI 97 (404)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTGG---------GHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcc---------cHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHH
Confidence 345689999999999999874321 011122222234578999999997 6788876543321
Q ss_pred -------Cchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 007504 95 -------EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (601)
Q Consensus 95 -------~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLn 165 (601)
.+.+ +.+|..++..+|..+|+++||++|||++.+|+ ++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 98 eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~--g~g~vln 174 (404)
T 2jif_A 98 EELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKE--GDYYVLN 174 (404)
T ss_dssp HHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEe--CCEEEEE
Confidence 1222 23455577788999999999999999999985 7999999999999999999999998 8999999
Q ss_pred cCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEec
Q 007504 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 245 (601)
Q Consensus 166 tp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd 245 (601)
|+|+||+| +..||+++|+|++..+++..|+++|+|| .+.|||++.+.|+++| +++++++.|.||
T Consensus 175 -----G~K~~is~-a~~Ad~~~v~ar~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd 238 (404)
T 2jif_A 175 -----GSKMWISS-AEHAGLFLVMANVDPTIGYKGITSFLVD-------RDTPGLHIGKPENKLG---LRASSTCPLTFE 238 (404)
T ss_dssp -----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEE
T ss_pred -----eEEEeecC-CcccCEEEEEEEeCCCCCCCceEEEEEe-------cCCCCeEeccCccccc---CCCCceEEEEEc
Confidence 99999999 8999999999998655455789999999 7889999999999999 999999999999
Q ss_pred ccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccccc
Q 007504 246 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (601)
Q Consensus 246 ~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~ 325 (601)
||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+
T Consensus 239 ~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~ 299 (404)
T 2jif_A 239 NVKVPEANILGQ------IGHGYK------YAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGK-------RLF 299 (404)
T ss_dssp EEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGG
T ss_pred cEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------ccc
Confidence 999999999984 454443 4556778899999999999999999999999999999999 999
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007504 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (601)
Q Consensus 326 ~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~ 405 (601)
+||.+|++|++|.+.+++++.+++++++.++. +. +....++++|+++++.+.++++.|+|+|||+||+
T Consensus 300 ~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~ 367 (404)
T 2jif_A 300 DFQGLQHQVAHVATQLEAARLLTYNAARLLEA-------GK-----PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYT 367 (404)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGB
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----ccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceec
Confidence 99999999999999999999999998876642 11 1234578999999999999999999999999999
Q ss_pred ccCChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 406 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 406 ~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
++++++++|||++...+++|++++++..|++.+++.
T Consensus 368 ~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~ 403 (404)
T 2jif_A 368 KDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAE 403 (404)
T ss_dssp TTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999864
No 6
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=1.2e-53 Score=475.69 Aligned_cols=488 Identities=17% Similarity=0.193 Sum_probs=355.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC------------C
Q 007504 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------------E 95 (601)
Q Consensus 33 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------------~ 95 (601)
++++.+++|+.+... + ...+........+|+.+.+.|| |+++||.+.+... .
T Consensus 56 ~l~~~~~~~~~~~~~----~-------~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~ 124 (607)
T 2uxw_A 56 ELVEPVSRFFEEVND----P-------AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDL 124 (607)
T ss_dssp HHHHHHHHHHHHTCC----H-------HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhcC----H-------HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHccc
Confidence 378999999977421 0 1111122233578999999997 6788886543311 1
Q ss_pred c--hhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCcee
Q 007504 96 P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173 (601)
Q Consensus 96 ~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K 173 (601)
+ ..+..|..+++.+|..+|+++||++|||++++|++++|+++|||++|||+.+++|+|++++++++|+|| |+|
T Consensus 125 s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~Ln-----G~K 199 (607)
T 2uxw_A 125 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLN-----GSK 199 (607)
T ss_dssp HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEE-----EEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEE-----eEE
Confidence 1 123345445567888999999999999999999999999999999999999999999998667799999 999
Q ss_pred eccCCCCCCCcEEEEEEEEccCC---C--CCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 174 WWPGGLGKVSTHAVVYARLITDG---Q--DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 174 ~~v~~~~~~Ad~~lV~A~~~~~~---~--~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
+|||| +..||+++|+|++...+ + ..|+++|+|| .+.|||++.+.++|+| +++++++.|.|+||+
T Consensus 200 ~~is~-~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp-------~~~~Gv~v~~~~~~~G---~rg~~t~~v~fddv~ 268 (607)
T 2uxw_A 200 LWISN-GGLADIFTVFAKTPVTDPATGAVKEKITAFVVE-------RGFGGITHGPPEKKMG---IKASNTAEVFFDGVR 268 (607)
T ss_dssp EEEET-TTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEE-------GGGSSEEECCCCCCSS---CTTSCEEEEEEEEEE
T ss_pred EeecC-CcccCEEEEEEEecCCCcccCCCCCceEEEEEe-------CCCCCeEEecCccccC---CCCCCeeEEEeccEE
Confidence 99999 89999999999986421 1 4689999999 7789999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++||. .|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 269 VP~~~llG~------~g~G~~------~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~~ 329 (607)
T 2uxw_A 269 VPSENVLGE------VGSGFK------VAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGE-------KIHNFG 329 (607)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred ecHHHhcCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhcH
Confidence 999999984 565554 5667788899999999999999999999999999999998 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|++|++|.+.+++++++++.+++.++. +. ++....++++|+++++.+.+++++|+|+|||+||++++
T Consensus 330 ~vq~~La~~~~~~eaaral~~~aa~~~d~-------~~----~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~ 398 (607)
T 2uxw_A 330 LIQEKLARMVMLQYVTESMAYMVSANMDQ-------GA----TDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEP 398 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999999999998876652 11 23456789999999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHHHHHHHHhh-----cCCCCCcccccc-----ccchhHhhhhcCCccccCCCC
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQL-----GYGNMPVGTTTY-----MGRAEQLMQCHCGVQKAEDWL 478 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~-----~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~ 478 (601)
+++++|||++...+++|+|++++..++...++...+. .+-.+|.....+ +............. ...+..
T Consensus 399 ~l~r~~Rda~~~~i~eGt~~i~~~~ia~~glq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 477 (607)
T 2uxw_A 399 GVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGL-SLSGLV 477 (607)
T ss_dssp SHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHGGGCSCCCTTC--------------------CCC-CCBTTB
T ss_pred HHHHHHHhcccceeeCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhhcccc-cccccC
Confidence 9999999999999999999999999987766544311 121223222111 11111111100000 001111
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCChHHHH
Q 007504 479 NP--SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD----IPGKGVKPIL 552 (601)
Q Consensus 479 ~~--~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~~~~~~~~f~~~v~~~----~~~~~~~~vL 552 (601)
++ +...+.+......+...+..-+.. .+......+..+.+++...++.|.+...+.+.+++ .+..+....|
T Consensus 478 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~ 554 (607)
T 2uxw_A 478 HPELSRSGELAVRALEQFATVVEAKLIK---HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKML 554 (607)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHH---HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 22 222232333322222221111211 11122223445667777777777666666555532 2223344667
Q ss_pred HHHHHHHhHHHHHhhhhHHHhc-CCCCHHH
Q 007504 553 EILCHIYALHLVHKHLGDFVST-GCITAKQ 581 (601)
Q Consensus 553 ~~l~~L~al~~i~~~~~~fl~~-~~ls~~~ 581 (601)
.+.+.-.++.+|++....+.++ ...+.+.
T Consensus 555 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (607)
T 2uxw_A 555 CDTWCIEAAARIREGMAALQSDPWQQELYR 584 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 7888888999999999888776 5554444
No 7
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=2e-55 Score=468.36 Aligned_cols=364 Identities=22% Similarity=0.234 Sum_probs=301.7
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhh
Q 007504 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRS 91 (601)
Q Consensus 17 ~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~ 91 (601)
++.-|++.+ ++||.++++++++|++++... .....+....+..++|+.+.+.|| |+++||.+.+
T Consensus 11 ~p~~m~~~~--~~e~~~l~~~~r~~~~~~~~~---------~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~ 79 (393)
T 3pfd_A 11 NPSFELFQL--PEEHIALREAIRALAEKEIAP---------YAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGAD 79 (393)
T ss_dssp -------------CHHHHHHHHHHHHHHHTGG---------GHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCC
T ss_pred CCcccCCCC--CHHHHHHHHHHHHHHHHhCch---------HHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCC
Confidence 444566644 478999999999999764211 011122222344678999999987 6788886544
Q ss_pred hcC------------Cchhh--HhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeC
Q 007504 92 SVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (601)
Q Consensus 92 ~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~ 157 (601)
+.. .+.++ ..| .++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~- 157 (393)
T 3pfd_A 80 SVATCIVIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVAD- 157 (393)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEE-
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEc-
Confidence 321 12332 223 35566788999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCc
Q 007504 158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 237 (601)
Q Consensus 158 ~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~ 237 (601)
+|+|+|| |+|.|++| +..||+++|+|++..+++..|+++|+|| .+.|||++.+.|+++| ++++
T Consensus 158 -~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~ 220 (393)
T 3pfd_A 158 -GDDWILN-----GSKCWITN-GGKSTWYTVMAVTDPDKGANGISAFMVH-------KDDEGFTVGPKERKLG---IKGS 220 (393)
T ss_dssp -TTEEEEE-----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-------TTSTTEEEEEECCBSS---CTTS
T ss_pred -CCEEEEe-----eEEEEecC-CcccCEEEEEEEeCCCCCCCceEEEEEE-------CCCCCeEecCCCCccc---CCCC
Confidence 7999999 99999999 8999999999998765556789999999 7889999999999999 9999
Q ss_pred cceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007504 238 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 317 (601)
Q Consensus 238 ~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~ 317 (601)
+++.|.||||+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 221 ~~~~v~fddv~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-- 286 (393)
T 3pfd_A 221 PTTELYFENCRIPGDRIIGE------PGTGFK------TALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGR-- 286 (393)
T ss_dssp CEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE--
T ss_pred CceEEEEccEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCc--
Confidence 99999999999999999984 454443 5566778899999999999999999999999999999999
Q ss_pred CCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007504 318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 397 (601)
Q Consensus 318 ~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q 397 (601)
||++||.+|++|++|.+.+++++.+++++++.+++ +. ++....++++|+++++.+.++++.|+|
T Consensus 287 -----~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~----~~~~~~~~~aK~~a~~~a~~~~~~a~q 350 (393)
T 3pfd_A 287 -----PVSDNQGVQFMLADMAMKIEAARLMVYSAAARAER-------GE----GDLGFISAASKCFASDVAMEVTTDAVQ 350 (393)
T ss_dssp -----EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------C--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887763 11 123445789999999999999999999
Q ss_pred HhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 398 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 398 ~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+|||+||+++++++++|||++...+++|++++++..|++.+|+
T Consensus 351 ~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999863
No 8
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=2.1e-54 Score=459.60 Aligned_cols=356 Identities=21% Similarity=0.200 Sum_probs=304.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc--------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~-------- 93 (601)
-++|+.++++.+++|+.+... + .....+........+|+.+.+.|| |+++||.+.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~--~-------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 77 (387)
T 2d29_A 7 EGAEERQVLGPFREFLKAEVA--P-------GAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTG--G-------GHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcc--h-------hHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 458899999999999965321 0 011122222234578999999887 678887654332
Q ss_pred ----CCchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 94 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 94 ----~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
+.+.+ +..|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 153 (387)
T 2d29_A 78 IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKV--EGGWRLN-- 153 (387)
T ss_dssp HHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEe--CCEEEEE--
Confidence 11233 2345457788899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCC----CCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEE
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~----~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~ 243 (601)
|+|+|++| +..||+++|+|++..++ +..|+++|+|| .+.|||++.+.|+++| +++++++.|.
T Consensus 154 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~ 219 (387)
T 2d29_A 154 ---GTKQFITQ-GSVAGVYVVMARTDPPPSPERKHQGISAFAFF-------RPERGLKVGRKEEKLG---LTASDTAQLI 219 (387)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEE-------CCSSSEEECCCCCCSS---CTTSCEEEEE
T ss_pred ---eEEeccCC-CCcCCEEEEEEEeCCccccCCCCCCeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEE
Confidence 99999999 89999999999986443 45689999999 7789999999999999 9999999999
Q ss_pred ecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccc
Q 007504 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (601)
Q Consensus 244 fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~ 323 (601)
||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 220 f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~ 280 (387)
T 2d29_A 220 LEDLFVPEEALLGE------RGKGFY------DVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGR-------P 280 (387)
T ss_dssp EEEEEEEGGGEESS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------E
T ss_pred EeeEEECHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCc-------c
Confidence 99999999999984 454443 4566778899999999999999999999999999999999 9
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007504 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (601)
Q Consensus 324 i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G 403 (601)
|++||.+||+|++|.+.+++++.+++++++.++. +. +....++++|+++++.+.++++.|+|+|||+|
T Consensus 281 i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g 348 (387)
T 2d29_A 281 IAEFEGVSFKLAEAATELEAARLLYLKAAELKDA-------GR-----PFTLEAAQAKLFASEAAVKACDEAIQILGGYG 348 (387)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 9999999999999999999999999999887652 11 23456889999999999999999999999999
Q ss_pred ccccCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 404 ~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
|+++++++++|||++...+++|++++++..+++.+++
T Consensus 349 ~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~ 385 (387)
T 2d29_A 349 YVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385 (387)
T ss_dssp GSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999886
No 9
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.7e-54 Score=459.05 Aligned_cols=355 Identities=21% Similarity=0.288 Sum_probs=303.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc--------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~-------- 93 (601)
-++|+.++++.+++|+.+... + .....+........+|+.+.+.|| |+++||.+.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~--~-------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~ee 75 (379)
T 1ukw_A 5 LTEEQRQLQALARRFAKEVIL--P-------VAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEE 75 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHTTG--G-------GHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCc--h-------hHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHH
Confidence 358899999999999966422 1 011122222234678999999997 677887654332
Q ss_pred ----CCchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 94 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 94 ----~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
+.+.+ +.+| .++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 76 l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 150 (379)
T 1ukw_A 76 LAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQ--GDHYVLN-- 150 (379)
T ss_dssp HHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEe--CCEEEEE--
Confidence 11223 2344 46778899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+|++| +..||+++|+|++..+++..|+++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 151 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~~Gv~v~~~~~~~G---~~~~~~~~v~fd~v 216 (379)
T 1ukw_A 151 ---GTKMWISN-GGEAEWVVVFATVNPELRHKGVVALVVE-------RGTPGFKAIKIHGKMG---QRASGTYELVFEDV 216 (379)
T ss_dssp ---EEEEEEET-TTTEEEEEEEEESCGGGGGGGEEEEEEE-------TTCTTEEEEECCCCSS---CTTSCEEEEEEEEE
T ss_pred ---EEEecccC-CCcCCEEEEEEEcCCCCCCCceEEEEEe-------CCCCCeEecCcccccc---CCCCCeeEEEEeeE
Confidence 99999999 8999999999998654455689999999 7789999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 217 ~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~i~~~ 277 (379)
T 1ukw_A 217 KVPVENRLGE------EGEGFK------IAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGE-------PIANF 277 (379)
T ss_dssp EEEGGGEESC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGGS
T ss_pred EecHHhcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhh
Confidence 9999999984 444433 4556777899999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 278 q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~ 345 (379)
T 1ukw_A 278 QAIQFKLVDMLIGIETARMYTYYAAWLADQ-------GL-----PHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVRE 345 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhhCCeecCCC
Confidence 999999999999999999999999887753 11 234568999999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
++++++|||++...+++|++++++..|++.+|+
T Consensus 346 ~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 346 FPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp SSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999874
No 10
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.1e-54 Score=457.82 Aligned_cols=356 Identities=20% Similarity=0.192 Sum_probs=304.8
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHH---hhhcC----
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASML---RSSVD---- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~---~~~~~---- 94 (601)
-++|+.++++.+++|+.+..... ....+........+|+.+.+.|| |+++||.+ .++..
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v 75 (383)
T 1buc_A 5 LTDIQQDFLKLAHDFGEKKLAPT---------VTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILA 75 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTT---------HHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchh---------HHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHH
Confidence 35889999999999997642210 11122222234568999999886 67888876 44321
Q ss_pred --------Cchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEE
Q 007504 95 --------EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164 (601)
Q Consensus 95 --------~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vL 164 (601)
.+.+ +.+|..+++.+|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++ +|+|+|
T Consensus 76 ~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~-~~g~~l 154 (383)
T 1buc_A 76 VEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKND-DGTYTL 154 (383)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEE
T ss_pred HHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcC-CCEEEE
Confidence 1222 34455577888999999999999999999999999999999999999999999999864 678999
Q ss_pred ecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEe
Q 007504 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRF 244 (601)
Q Consensus 165 ntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f 244 (601)
| |+|+|++| +..||+++|+|++..+++..|+++|+|| .+.|||++.+.|+++| +++++++.|.|
T Consensus 155 n-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~~Gv~v~~~~~~~g---~~~~~~~~v~f 218 (383)
T 1buc_A 155 N-----GSKIFITN-GGAADIYIVFAMTDKSKGNHGITAFILE-------DGTPGFTYGKKEDKMG---IHTSQTMELVF 218 (383)
T ss_dssp E-----EEEEEEET-TTTCSEEEEEEESCSSSSTTSEEEEEEE-------TTCTTEEEEEECCCSS---CTTSCEEEEEE
T ss_pred E-----EEEeccCC-CCcCCEEEEEEEeCCCCCCCceEEEEEE-------CCCCCeEecCcccccc---ccCCceeEEEE
Confidence 9 99999999 8999999999998655455789999999 7789999999999999 99999999999
Q ss_pred cccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccc
Q 007504 245 EHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 324 (601)
Q Consensus 245 d~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i 324 (601)
|||+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||
T Consensus 219 ~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~-------~i 279 (383)
T 1buc_A 219 QDVKVPAENMLGE------EGKGFK------IAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGK-------PL 279 (383)
T ss_dssp EEEEECGGGEESC------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EG
T ss_pred ccEEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------ch
Confidence 9999999999984 455443 4556778899999999999999999999999999999999 99
Q ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Q 007504 325 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 404 (601)
Q Consensus 325 ~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~ 404 (601)
++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||
T Consensus 280 ~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~ 347 (383)
T 1buc_A 280 CKFQSISFKLADMKMQIEAARNLVYKAACKKQE-------GK-----PFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGY 347 (383)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCeec
Confidence 999999999999999999999999999887753 11 235668899999999999999999999999999
Q ss_pred cccCChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 405 LCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 405 ~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
+++++++++|||++...+++|++++++..+++.++
T Consensus 348 ~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l 382 (383)
T 1buc_A 348 SEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382 (383)
T ss_dssp STTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999875
No 11
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=2.9e-54 Score=459.08 Aligned_cols=360 Identities=21% Similarity=0.256 Sum_probs=307.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++|+.++++++++|+.+..... ....+........+|+.+.+.|| |+++||.+.++..
T Consensus 6 ~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 76 (391)
T 2vig_A 6 LPETHQMLLQTCRDFAEKELFPI---------AAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEE 76 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccc---------HHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHH
Confidence 35899999999999997532100 11122222234568999999887 6788876543321
Q ss_pred -----Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 95 -----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 95 -----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
.+. .+..|..++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 152 (391)
T 2vig_A 77 ISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAE--GDSWVLN-- 152 (391)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEe--CCEEEEe--
Confidence 111 23445447788899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+|++| +..||+++|+|++..+++..|+++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 153 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~r~~~~~~v~fd~v 218 (391)
T 2vig_A 153 ---GTKAWITN-AWEASAAVVFASTDRALQNKSISAFLVP-------MPTPGLTLGKKEDKLG---IRGSSTANLIFEDC 218 (391)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECCSSSTTSCEEEEEEE-------SSCTTEEECCCCCBSS---CTTSCEEEEEEEEE
T ss_pred ---eEEEeecC-CCcCCEEEEEEEeCCCCCCCceEEEEEe-------CCCCCeEecCcccccc---CCCCCeeEEEECcE
Confidence 99999999 8999999999998644345689999999 7789999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 219 ~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~ 279 (391)
T 2vig_A 219 RIPKDSILGE------PGMGFK------IAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGA-------PLTKL 279 (391)
T ss_dssp EEEGGGEESS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------cchhh
Confidence 9999999984 455443 4556778899999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+|++|++|.+.+++++.+++++++.++. +. .....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 280 q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~ 347 (391)
T 2vig_A 280 QVIQFKLADMALALESARLLTWRAAMLKDN-------KK-----PFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTE 347 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhCCeEecCC
Confidence 999999999999999999999999887642 11 134568999999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHHHHHh
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 444 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~ 444 (601)
++++++|||++...+++|++++++..+++.+++.++.
T Consensus 348 ~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 384 (391)
T 2vig_A 348 MPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 384 (391)
T ss_dssp SSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999987753
No 12
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.8e-54 Score=461.11 Aligned_cols=359 Identities=18% Similarity=0.240 Sum_probs=304.2
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHH--HHHHHHHHccC-----CHHHHHHHhhhcC----
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAA--YAWKRIIELRL-----SEEEASMLRSSVD---- 94 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~-----~~~~gg~~~~~~~---- 94 (601)
.-++|+.++++.+++|+.+..... ....+....... .+|+.+.+.|| |+++||.+.++..
T Consensus 12 ~~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 82 (394)
T 1ivh_A 12 GLSEEQRQLRQTMAKFLQEHLAPK---------AQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLV 82 (394)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 346899999999999997632210 111111111223 78999999887 6788876543311
Q ss_pred --------Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEE
Q 007504 95 --------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164 (601)
Q Consensus 95 --------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vL 164 (601)
.+. .+.+|..+++..|..+|+++||++|||++.+|++++|+++|||++|||+..++|+|+++ +|+|+|
T Consensus 83 ~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l 160 (394)
T 1ivh_A 83 MEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK--GNHYIL 160 (394)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEE
T ss_pred HHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEc--CCEEEE
Confidence 122 23445557888999999999999999999999999999999999999999999999998 789999
Q ss_pred ecCCCCceeeccCCCCCCCcEEEEEEEEccC--CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEE
Q 007504 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 242 (601)
Q Consensus 165 ntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~--~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v 242 (601)
| |+|+|++| +..||+++|+|++..+ ++..|+++|+|| .+.|||++.+.|+++| +++++++.|
T Consensus 161 n-----G~K~~vs~-~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v 224 (394)
T 1ivh_A 161 N-----GNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-------KGMPGFSTSKKLDKLG---MRGSNTCEL 224 (394)
T ss_dssp E-----EEEEEEET-GGGCSEEEEEEESCTTCSSGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEE
T ss_pred E-----eEEEeeCC-CCcCCEEEEEEEeCCcccCCCCCeEEEEEe-------CCCCCeEecccccccc---CCCCCeeEE
Confidence 9 99999999 8999999999998644 344689999999 7889999999999999 999999999
Q ss_pred EecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcc
Q 007504 243 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 322 (601)
Q Consensus 243 ~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~ 322 (601)
.||||+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 225 ~fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~------- 285 (394)
T 1ivh_A 225 IFEDCKIPAANILGH------ENKGVY------VLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQ------- 285 (394)
T ss_dssp EEEEEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTE-------
T ss_pred EECcEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------
Confidence 999999999999984 444443 4566777899999999999999999999999999999999
Q ss_pred cccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007504 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (601)
Q Consensus 323 ~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~ 402 (601)
||++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+
T Consensus 286 ~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~ 353 (394)
T 1ivh_A 286 KIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDE-------GH-----CTAKDCAGVILYSAECATQVALDGIQCFGGN 353 (394)
T ss_dssp EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999887642 11 2245678999999999999999999999999
Q ss_pred cccccCChhhhccccccccccCcchHHHHHHHHHHHHHHH
Q 007504 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (601)
Q Consensus 403 G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 442 (601)
||+++++++++|||++...+++|++++++..+++.+++.+
T Consensus 354 g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~~ 393 (394)
T 1ivh_A 354 GYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 393 (394)
T ss_dssp GGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC-
T ss_pred cccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998643
No 13
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=3e-54 Score=459.77 Aligned_cols=358 Identities=21% Similarity=0.269 Sum_probs=303.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc--------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~-------- 93 (601)
-++|+.++++.+++|+.+... + .....+........+|+.+.+.|| |+++||.+.++.
T Consensus 16 ~~~~~~~l~~~~r~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 86 (396)
T 1egd_A 16 FTEQQKEFQATARKFAREEII----P-----VAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEE 86 (396)
T ss_dssp CCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCc----h-----hHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHH
Confidence 468999999999999965321 0 011111111233568999999887 678887654331
Q ss_pred ----CCchhhH-hhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 94 ----DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 94 ----~~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
+.+.++. .|..++..+|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 161 (396)
T 1egd_A 87 LAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN--- 161 (396)
T ss_dssp HHHHCHHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEEE---
T ss_pred HHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEe--CCEEEEE---
Confidence 1122332 45556666788999999999999999999999999999999999999999999988 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCC---CceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEec
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQD---HGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 245 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~---~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd 245 (601)
|+|+|++| +..||+++|+|++..+++. .|+++|+|| .+.|||++.+.|+++| +++++++.|.||
T Consensus 162 --G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd 228 (396)
T 1egd_A 162 --GQKMWITN-GGKANWYFLLARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG---QRCSDTRGIVFE 228 (396)
T ss_dssp --EEEEEEET-TTTCSEEEEEEECCCCTTSCGGGTEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEE
T ss_pred --EEEEcccC-CcccCEEEEEEEeCCCCCCCCCCCeEEEEEe-------CCCCCeeeCCcccccc---ccCCCeeEEEEC
Confidence 99999999 8999999999998654333 689999999 7889999999999999 999999999999
Q ss_pred ccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCccccc
Q 007504 246 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (601)
Q Consensus 246 ~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~ 325 (601)
||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+
T Consensus 229 ~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~ 289 (396)
T 1egd_A 229 DVKVPKENVLIG------DGAGFK------VAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGK-------LLV 289 (396)
T ss_dssp EEEEEGGGBSSS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTE-------EGG
T ss_pred cEEECHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCc-------chh
Confidence 999999999984 454443 4556777899999999999999999999999999999999 999
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007504 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (601)
Q Consensus 326 ~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~ 405 (601)
+||.+|++|++|.+.+++++.+++++++.++. +. +....++++|+++++.+.++++.|+|+|||+||+
T Consensus 290 ~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~ 357 (396)
T 1egd_A 290 EHQAISFMLAEMAMKVELARMSYQRAAWEVDS-------GR-----RNTYYASIAKAFAGDIANQLATDAVQILGGNGFN 357 (396)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TS-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTB
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999999887652 11 2244578999999999999999999999999999
Q ss_pred ccCChhhhccccccccccCcchHHHHHHHHHHHHHHH
Q 007504 406 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (601)
Q Consensus 406 ~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 442 (601)
++++++++|||++...+++|++++++..|++.+++.+
T Consensus 358 ~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~ 394 (396)
T 1egd_A 358 TEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKY 394 (396)
T ss_dssp TTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998754
No 14
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=2.6e-54 Score=461.19 Aligned_cols=362 Identities=20% Similarity=0.218 Sum_probs=306.9
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhh
Q 007504 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRS 91 (601)
Q Consensus 17 ~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~ 91 (601)
++.-|++ .-++||.++++.+++|+.+..... ....+.......++|+.+.+.|| |+++||.+.+
T Consensus 18 ~~~~M~~--~~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~ 86 (403)
T 3p4t_A 18 GPGSMSI--WTTAEREALRKTVRAFAEREVLPH---------AHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGD 86 (403)
T ss_dssp -----CT--TSSHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCC
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHhCchh---------HHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCC
Confidence 4455654 345899999999999998643211 11122222345678999999997 6788886644
Q ss_pred hc------------CCch---hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEe
Q 007504 92 SV------------DEPA---FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFD 156 (601)
Q Consensus 92 ~~------------~~~~---~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d 156 (601)
+. +.+. ++.+|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 87 ~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~ 166 (403)
T 3p4t_A 87 GADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLD 166 (403)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEe
Confidence 31 2233 34456557778899999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCC
Q 007504 157 PQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT 236 (601)
Q Consensus 157 ~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~ 236 (601)
+|+|+|| |+|.|++| +..||+++|+|++..+ +..|+++|+|| .+.|||++.+.|+++| +++
T Consensus 167 --~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~ 227 (403)
T 3p4t_A 167 --GDHYVIN-----GAKTYITS-GVRADYVVTAARTGGP-GAGGVSLIVVD-------KGTPGFEVTRKLDKMG---WRS 227 (403)
T ss_dssp --TTEEEEE-----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE-------TTCTTEEEEEECCBSS---CTT
T ss_pred --CCEEEEE-----EEEEEecC-CcccCEEEEEEEeCCC-CCCceEEEEEe-------CCCCCeEecCCCCccc---CCC
Confidence 8999999 99999999 8999999999998654 45789999999 7789999999999999 999
Q ss_pred ccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007504 237 MDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSK 316 (601)
Q Consensus 237 ~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~ 316 (601)
++++.|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 228 ~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~- 294 (403)
T 3p4t_A 228 SDTAELSYTDVRVPVANLVGS------ENTGFA------QIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGR- 294 (403)
T ss_dssp SCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-
T ss_pred CCeeEEEEcceEecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-
Confidence 999999999999999999984 454443 5567788899999999999999999999999999999999
Q ss_pred CCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 007504 317 NGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECR 396 (601)
Q Consensus 317 ~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~ 396 (601)
||++||.+|++|++|.+.+++++.+++++++.++. +.. .....++++|+++++.+.++++.|+
T Consensus 295 ------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~~----~~~~~~~~aK~~a~~~a~~v~~~a~ 357 (403)
T 3p4t_A 295 ------PLISRQAVQNTLAGMARRIDVARVYTRHVVERQLA-------GET----NLIAEVCFAKNTAVEAGEWVANQAV 357 (403)
T ss_dssp ------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887652 111 1155688999999999999999999
Q ss_pred HHhccccccccCChhhhccccccccccCcchHHHHHHHHHHH
Q 007504 397 KLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (601)
Q Consensus 397 q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 438 (601)
|+|||+||+++++++++|||++...+++|++++++..+++.+
T Consensus 358 q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 358 QLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp HHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987
No 15
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=3.1e-54 Score=460.52 Aligned_cols=353 Identities=18% Similarity=0.212 Sum_probs=304.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc--------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~-------- 93 (601)
-++||.++++.+++|+.++.... ....+....+..++|+.+.+.|| |+++||.+.++.
T Consensus 29 ~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 99 (403)
T 3r7k_A 29 TTPERRALSQMARSFVEREIAPK---------LAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEA 99 (403)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHH
Confidence 35899999999999998642210 11122222344678999999997 678887654331
Q ss_pred -----CCch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007504 94 -----DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (601)
Q Consensus 94 -----~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 166 (601)
+... ++.+|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 la~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln- 176 (403)
T 3r7k_A 100 ILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVRE--GDTYVVN- 176 (403)
T ss_dssp HHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEC--SSEEEEE-
T ss_pred HHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEE--CCEEEEE-
Confidence 1112 34445567788899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 167 p~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|+|++| +..||+++|+|++..+ +..|+++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 177 ----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~ 240 (403)
T 3r7k_A 177 ----GAKTFITS-GVRADFVTTAVRTGGP-GYGGVSLLVID-------KNSPGFEVSRRLDKMG---WRCSDTAELSFVD 240 (403)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE-------TTCTTEEEEEECCBSS---CTTSCEEEEEEEE
T ss_pred ----EEEEcccC-CccCCEEEEEEEcCCC-CCCceEEEEEe-------CCCCCeEecCcccccC---CCCCCceEEEEee
Confidence 99999999 8999999999998654 55789999999 7789999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 241 v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 301 (403)
T 3r7k_A 241 VRVPADNLVGA------ENSGFL------QIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGR-------PLTG 301 (403)
T ss_dssp EEEEGGGEESS------TTCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCC-------chhh
Confidence 99999999984 454443 5566788899999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+||+|++|.+.+++++.+++++++.+++ +. +....++++|.++++.+.++++.|+|+|||+||++
T Consensus 302 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~ 369 (403)
T 3r7k_A 302 RQIIRHKLAEMARQVDVACTYTRAVMQRWLA-------GE-----DVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMR 369 (403)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEecC
Confidence 9999999999999999999999999887752 11 12445889999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 438 (601)
+++++++|||++...+++|++++++..|++.+
T Consensus 370 ~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 370 ESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp TSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 16
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-54 Score=455.28 Aligned_cols=350 Identities=21% Similarity=0.246 Sum_probs=299.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC--------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~-------- 94 (601)
++||.++++.+++|+.+... + .....+........+|+.+.+.|| |+++||.+.++..
T Consensus 4 ~~e~~~l~~~~r~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 74 (372)
T 2dvl_A 4 TQEQRLVLDAVRRVAREVLY----P-----LAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEEL 74 (372)
T ss_dssp CHHHHHHHHHHHHHHHHTHH----H-----HHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc----h-----hHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 58899999999999975321 0 011111112234568999999886 6788876543321
Q ss_pred ----Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 95 ----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 95 ----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
.+. .+.+|..+++.+|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 149 (372)
T 2dvl_A 75 AAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRV--KGGFVLN--- 149 (372)
T ss_dssp HHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE---
Confidence 122 23445446778899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (601)
|+|+|++| +..||+++|+|++.. |+++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 150 --G~K~~~s~-~~~Ad~~~v~a~~~~-----g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~ 211 (372)
T 2dvl_A 150 --GVKSWITS-AGHAHLYVVMARTEK-----GISAFLVE-------KGTPGLSFGRPEEKMG---LHAAHTAEVRLEEVF 211 (372)
T ss_dssp --EEEEEEET-TTTCSEEEEEEEETT-----EEEEEEEE-------TTCTTEEECCCCCCSS---CTTSCEEEEEEEEEE
T ss_pred --eEEEeecC-CCcCCEEEEEEEeCC-----CcEEEEEe-------CCCCCeEecCcccccc---cCcCCeeEEEECcEE
Confidence 99999999 899999999999742 79999999 7899999999999999 999999999999999
Q ss_pred cCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchH
Q 007504 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (601)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q 328 (601)
||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 212 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q 272 (372)
T 2dvl_A 212 VPEENLLGE------EGRGLA------YALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGK-------KLKEHQ 272 (372)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred eCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------chhhhH
Confidence 999999984 454443 4566778899999999999999999999999999999999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++++
T Consensus 273 ~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 340 (372)
T 2dvl_A 273 AIAFKIADMHVKIAAARALVLEAARKKDR-------GE-----RFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDY 340 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCeecCCCC
Confidence 99999999999999999999999877642 11 2345689999999999999999999999999999999
Q ss_pred ChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++|||++...+++|++++++..|++.+++
T Consensus 341 ~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 341 RVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp SHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998863
No 17
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.2e-53 Score=453.59 Aligned_cols=354 Identities=22% Similarity=0.263 Sum_probs=303.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhh---------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS--------- 92 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~--------- 92 (601)
-++||.++++++++|+.++.... ....+........+|+.+.+.|| |+++||.+.++
T Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 80 (385)
T 2pg0_A 10 LREEHHMFRAAFRKFLEKEAYPH---------YNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEE 80 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchh---------HHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHH
Confidence 45899999999999997643210 11122222234578999999997 67787755332
Q ss_pred ---cC-CchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 93 ---VD-EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 93 ---~~-~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
.+ .+.++.+|..+++..|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 81 la~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 155 (385)
T 2pg0_A 81 LEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD--GDYYIVN--- 155 (385)
T ss_dssp HHHHCGGGHHHHHHHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HHhhCCchHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEc--CCEEEEE---
Confidence 12 23333346667888899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccC--CCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~--~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|+|++| +..||+++|+|++..+ ++..|+++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 156 --G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~ 222 (385)
T 2pg0_A 156 --GQKTFITN-GIHADLIVVACKTDPQAKPPHRGISLLVVE-------RDTPGFTRGRKLEKVG---LHAQDTAELFFQD 222 (385)
T ss_dssp --EEEEEETT-TTTCSEEEEEEESCTTCSSGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCCEEEEEEE
T ss_pred --eEEecccC-CcccCEEEEEEEeCCccCCCCCceEEEEEe-------CCCCCeEecCCccccc---cCCCceEEEEEcc
Confidence 99999999 8999999999997644 345689999999 7789999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 223 v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 283 (385)
T 2pg0_A 223 AKVPAYNLLGE------EGKGFY------YLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGK-------RVSE 283 (385)
T ss_dssp EEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred eEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC-------ccch
Confidence 99999999984 455443 4556778899999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+|++|++|.+.+++++.+++++++.+++ +. +....++++|.++++.+.++++.|+|+|||+||++
T Consensus 284 ~q~v~~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~ 351 (385)
T 2pg0_A 284 FQTVQFRLAEMATEIALGRTFVDRVIEEHMA-------GK-----QIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYME 351 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 9999999999999999999999999887652 11 23566889999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 438 (601)
+++++++|||++...+++|++++++..+++.+
T Consensus 352 ~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 352 EYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp TSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred CCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864
No 18
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.4e-53 Score=454.08 Aligned_cols=356 Identities=21% Similarity=0.239 Sum_probs=302.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC------
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------ 94 (601)
.-++||.++++++++|+.++.. + .....+........+|+.+.+.|| |+++||.+.+...
T Consensus 18 ~~~~e~~~~~~~~r~~~~~~~~----~-----~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~e 88 (393)
T 1rx0_A 18 GLNEEQKEFQKVAFDFAAREMA----P-----NMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFE 88 (393)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC----c-----cHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence 3468999999999999976421 0 011122222234568999999997 6788876543311
Q ss_pred ------Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007504 95 ------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (601)
Q Consensus 95 ------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 166 (601)
.+. .+..| .+++..|..+|+++||++|||++++|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 89 ela~~~~~~~~~~~~~-~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln- 164 (393)
T 1rx0_A 89 ALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQ--GDHYILN- 164 (393)
T ss_dssp HHHTTCHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-
T ss_pred HHHHhCcchhHHHHHh-HHHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEc--CCEEEEE-
Confidence 111 12334 36677889999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 167 p~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|.|++| +..||+++|+|++.. +++.|+++|+|| .+.|||++.+.++++| +++.+++.|.|||
T Consensus 165 ----G~K~~is~-a~~Ad~~~v~a~~~~-~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~ 228 (393)
T 1rx0_A 165 ----GSKAFISG-AGESDIYVVMCRTGG-PGPKGISCIVVE-------KGTPGLSFGKKEKKVG---WNSQPTRAVIFED 228 (393)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEESSS-SSGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEE
T ss_pred ----eEEEeecC-CccCCEEEEEEEcCC-CCCCceEEEEEe-------CCCCCeEecCcccccc---cCCCCceEEEEcC
Confidence 99999999 899999999999753 345689999999 7889999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 229 v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~ 289 (393)
T 1rx0_A 229 CAVPVANRIGS------EGQGFL------IAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGE-------PLAS 289 (393)
T ss_dssp EEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred eEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------chhh
Confidence 99999999984 454443 4556677899999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+|++|++|.+.+++++.+++++++.++. ++ ++....++++|+++++.+.++++.|+|+|||+||++
T Consensus 290 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 358 (393)
T 1rx0_A 290 NQYLQFTLADMATRLVAARLMVRNAAVALQE-------ER----KDAVALCSMAKLFATDECFAICNQALQMHGGYGYLK 358 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 9999999999999999999999999887652 11 234567899999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++++|||++...+++|++++++..|++.+|+
T Consensus 359 ~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 359 DYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp TSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999885
No 19
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.5e-53 Score=457.22 Aligned_cols=365 Identities=18% Similarity=0.221 Sum_probs=303.6
Q ss_pred HHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHH------------------HHHHHHHHHHHHccC-
Q 007504 21 MKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTL------------------RKAAYAWKRIIELRL- 81 (601)
Q Consensus 21 ~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~- 81 (601)
|++ .-++||.++++++++|+.++.. + .....+... .....+|+.+.+.||
T Consensus 5 M~~--~~~~~~~~l~~~~r~~~~~~~~----p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~ 73 (415)
T 4hr3_A 5 MDF--APSARAAELIAAVREFIDAEVM----P-----VERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLW 73 (415)
T ss_dssp --C--CCCHHHHHHHHHHHHHHHHTHH----H-----HHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCS
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHhCC----c-----cHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCc
Confidence 544 3468999999999999987411 0 011111111 134678999999997
Q ss_pred ----CHHHHHHHhhhc---------CC----chhhHhh--hhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCC-
Q 007504 82 ----SEEEASMLRSSV---------DE----PAFTDLH--WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG- 141 (601)
Q Consensus 82 ----~~~~gg~~~~~~---------~~----~~~~~~~--~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~- 141 (601)
|+++||.+.++. .. +.++..+ ...+...|..+|+++||++|||++.+|++++|+++|||+
T Consensus 74 ~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~ 153 (415)
T 4hr3_A 74 NLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDV 153 (415)
T ss_dssp STTCCCTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTS
T ss_pred CcCCCHHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCC
Confidence 677887654432 11 1111111 112336789999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCC--CcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCC
Q 007504 142 HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLP 218 (601)
Q Consensus 142 ~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~--Ad~~lV~A~~~~~~-~~~G~~~flV~~r~~~~~~~~p 218 (601)
+|||+..++|+|+++ +|+|+|| |+|+||+| +.+ ||+++|+|++..++ +..|+++|+|| .+.|
T Consensus 154 ~gsd~~~~~t~A~~~--g~g~~ln-----G~K~~is~-a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~-------~~~p 218 (415)
T 4hr3_A 154 ASSDATNMAATAVVE--GDEVVIN-----GRKWWSTG-VGHPDCKVIIFMGLTDPNAHRYARHSMVLVP-------MDTP 218 (415)
T ss_dssp CTTSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCTTSCTTSSEEEEEEE-------TTST
T ss_pred CCCchhhCeeEEEEE--CCEEEEe-----eEEeeECC-CCCCCCCEEEEEEEeCCCCCCCCceEEEEEE-------cCCC
Confidence 999999999999998 8999999 99999999 866 99999999986543 34689999999 7889
Q ss_pred CeEEeeCCCcCCCCCCCCcc--ceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHH
Q 007504 219 GITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCAL 296 (601)
Q Consensus 219 Gv~i~~~~~~~G~~~~~~~~--~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~ 296 (601)
||++.+.|+++| +++++ ++.|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|++
T Consensus 219 Gv~v~~~~~~~g---~r~~~~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a 283 (415)
T 4hr3_A 219 GITVERMLPTMG---FYDEPGGHGVVSFDNVRLPADAFIAG------PGKGFE------IAQGRLGPGRVHHAMRLIGLA 283 (415)
T ss_dssp TEEEEEECCBTT---BCCTTTCEEEEEEEEEEEEGGGBSSC------TTCHHH------HHHHHCSHHHHHHHHHHHHHH
T ss_pred ceEecCCCCccc---cCCCCCCeeEEEEccEEECHHHcCCC------CCchHH------HHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999 99887 9999999999999999984 454443 455667789999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 007504 297 SRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHAC 376 (601)
Q Consensus 297 ~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (601)
+++++.+++|+++|+|||+ ||++||.+|++|++|.+.+++++.+++++++.+++. . ..+....
T Consensus 284 ~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-------~---~~~~~~~ 346 (415)
T 4hr3_A 284 EVALEHACRRGLDRTAFGK-------PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTV-------G---IMGALSA 346 (415)
T ss_dssp HHHHHHHHHHHHHCEETTE-------EGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------C---GGGCHHH
T ss_pred HHHHHHHHHHHhcCccCCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c---CCchHHH
Confidence 9999999999999999999 999999999999999999999999999998877631 0 1234566
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHH
Q 007504 377 TAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 443 (601)
Q Consensus 377 ~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~ 443 (601)
++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..+++.+|+.++
T Consensus 347 ~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l~~~~ 413 (415)
T 4hr3_A 347 VSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKYA 413 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999999999999999999998653
No 20
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=3.2e-54 Score=459.50 Aligned_cols=355 Identities=21% Similarity=0.209 Sum_probs=297.3
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC------
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------ 94 (601)
.-++||.++++++++|+.++.. + .....+.......++|+.+.+.|| |+++||.+.++..
T Consensus 18 ~~~~e~~~l~~~~r~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e 88 (396)
T 3ii9_A 18 QLADDERMVRDAAHAYAQGKLA--P-------RVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAR 88 (396)
T ss_dssp GSCHHHHHHHHHHHHHCCCCCH--H-------HHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC--h-------hHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 3458999999999999865321 0 111122222334578999999997 6788876644321
Q ss_pred ------Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007504 95 ------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (601)
Q Consensus 95 ------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 166 (601)
.+. .+.+|..++..+|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 89 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln- 165 (396)
T 3ii9_A 89 EVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKV--PGGYSLS- 165 (396)
T ss_dssp HHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEE--TTEEEEE-
T ss_pred HHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEe--CCEEEEE-
Confidence 121 23445556677899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 167 p~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|.|++| +..||+++|+|++.. ++..|+++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 166 ----G~K~~vs~-a~~Ad~~~v~a~~~~-~g~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fdd 229 (396)
T 3ii9_A 166 ----GSKMWITN-SPIADVFVVWAKLDE-DGRDEIRGFILE-------KGCKGLSAPAIHGKVG---LRASITGEIVLDE 229 (396)
T ss_dssp ----EEEEEEET-GGGCSEEEEEEEEEE-TTEEEEEEEEEE-------TTCTTEECCBCCCCSS---CTTSCEEEEEEEE
T ss_pred ----EEEEeECC-CccCCEEEEEEEecC-CCCCceEEEEEe-------cCCCCeEecccccccc---CCcCCeeEEEEcc
Confidence 99999999 899999999999863 334689999999 7789999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++|+. +.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 230 v~Vp~~~~l~~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 289 (396)
T 3ii9_A 230 AFVPEENILPH-------VKGLR------GPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGR-------PLAA 289 (396)
T ss_dssp EEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEECHHHccCC-------ChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCC-------chhh
Confidence 99999999962 33332 4566778899999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+||+|++|.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.|+|+|||+||++
T Consensus 290 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~ 357 (396)
T 3ii9_A 290 NQLIQKKLADMQTEITLGLQGVLRLGRMKDE-------GT-----AAVEITSIMKRNSCGKALDIARLARDMLGGNGISD 357 (396)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSCSG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccC
Confidence 9999999999999999999999999887763 11 23456789999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++++|||++...+++|++++++..+++.+++
T Consensus 358 ~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llg 391 (396)
T 3ii9_A 358 EFGVARHLVNLEVVNTYEGTHDIHALILGRAQTG 391 (396)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHS
T ss_pred CCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999985
No 21
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=7.3e-54 Score=455.57 Aligned_cols=353 Identities=21% Similarity=0.221 Sum_probs=294.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++|+.++++.+++|+.+..... ....+.......++|+.+.+.|| |+++||.+.++..
T Consensus 16 ~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~ee 86 (387)
T 3nf4_A 16 PSQEAAELIELTREIADKVLDPI---------VDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEE 86 (387)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCcc---------HHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHH
Confidence 45889999999999997642210 11122222344568999999997 6788876543311
Q ss_pred -----Cchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 95 -----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 95 -----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
.+.+ +..|. +++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 87 l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-- 161 (387)
T 3nf4_A 87 IAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPT--DGGYVIN-- 161 (387)
T ss_dssp HHTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEe--CCEEEEE--
Confidence 1222 23343 6677899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+|++| +..||+++|+|++. ++..|+++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 162 ---G~K~~~s~-~~~Ad~~~v~a~~~--~~~~g~~~flV~-------~~~pGv~~~~~~~~~G---~~~~~~~~v~fd~v 225 (387)
T 3nf4_A 162 ---GSKSWITH-GGKADFYTLFARTG--EGSRGVSCFLVP-------ADQPGLSFGKPEEKMG---LHAVPTTSAFYDNA 225 (387)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECC----CCCEEEEEEE-------TTCTTEEECCCCCBSS---CCSSCEEEEEEEEE
T ss_pred ---eEEecccC-CcccCEEEEEEEeC--CCCCceEEEEEE-------CCCCCeEecCcccccc---cCCCCeeEEEEeeE
Confidence 99999999 89999999999975 345689999999 7889999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++++. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 226 ~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~ 286 (387)
T 3nf4_A 226 RIDADRRIGE------EGQGLQ------IAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGR-------KIIDH 286 (387)
T ss_dssp EEEGGGEESS------TTCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CTTTC
T ss_pred EecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCC-------chhhh
Confidence 9999999984 454443 5566778899999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+||+|+++.+.+++++.+++++++.+++ + .+....++++|+++++.+.++++.|+|+|||+||+++
T Consensus 287 q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------~-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~ 354 (387)
T 3nf4_A 287 QGLGFLLADMAAAVATARATYLDAARRRDQ-------G-----RPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRD 354 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcHhhcCC
Confidence 999999999999999999999999877652 1 1234567899999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
++++++|||++...+++|++++++..|++.++|
T Consensus 355 ~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 355 YRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp SSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred CcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998764
No 22
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=2.2e-53 Score=457.42 Aligned_cols=353 Identities=21% Similarity=0.277 Sum_probs=298.6
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHHHHHHhhhc--------
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRSSV-------- 93 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~gg~~~~~~-------- 93 (601)
.-++||.++++++++|++++.. + ..........+...+|+.+.+.||. +++||.+.++.
T Consensus 54 ~l~~e~~~l~~~~r~f~~~~~~----p-----~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~~~~~~~v~ee 124 (436)
T 2ix5_A 54 LLTPEEQAIRKKVRECMEKEVA----P-----IMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAE 124 (436)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCC----h-----hhHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCCHHHHHHHHHH
Confidence 3468999999999999976321 0 0011111112334689999999972 27777553321
Q ss_pred ----CCchh--hHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 94 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 94 ----~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
+.+.+ +.+|..+++.+|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 125 la~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~--gdg~vLn-- 200 (436)
T 2ix5_A 125 IARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKV--EGGWKIN-- 200 (436)
T ss_dssp HHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEe--CCEEEEe--
Confidence 11222 3456667788899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+||+| +..||+++|+|++..+ .++++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 201 ---G~K~~is~-a~~Ad~~lv~Ar~~~~---~~~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fddv 263 (436)
T 2ix5_A 201 ---GQKRWIGN-STFADLLIIFARNTTT---NQINGFIVK-------KDAPGLKATKIPNKIG---LRMVQNGDILLQNV 263 (436)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEEETTT---SSEEEEEEE-------TTCTTEEEEECCCBSS---STTSCEEEEEEEEE
T ss_pred ---eeccCCCC-CcccCEEEEEEEECCC---CcEEEEEEE-------CCCCCeEeeccccccC---CCcCCceeEEeccE
Confidence 99999999 8999999999997532 368999999 7889999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++|+. ..| +. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 264 ~VP~~~~lg~-----~~g--~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~ 323 (436)
T 2ix5_A 264 FVPDEDRLPG-----VNS--FQ------DTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGA-------PLAAF 323 (436)
T ss_dssp EEEGGGBCTT-----CSS--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCc-----ccc--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhc
Confidence 9999999974 112 22 4556778899999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+||+|++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++
T Consensus 324 q~vq~~la~~~~~~~aar~l~~~aa~~~d~-------g~-----~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e 391 (436)
T 2ix5_A 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYET-------GQ-----MTPGQASLGKAWISSKARETASLGRELLGGNGILAD 391 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999887652 11 123457899999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
++++++|||++...+++|++++++..+++.+++
T Consensus 392 ~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llg 424 (436)
T 2ix5_A 392 FLVAKAFCDLEPIYTYEGTYDINTLVTGREVTG 424 (436)
T ss_dssp GSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHhhcceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 23
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-53 Score=450.74 Aligned_cols=351 Identities=21% Similarity=0.248 Sum_probs=294.6
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------- 94 (601)
-++||.++++++++|+.+... + .....+........+|+.+.+.|| |+++||.+.++..
T Consensus 11 ~~~~~~~l~~~~r~~~~~~~~--~-------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 81 (385)
T 2eba_A 11 LTPEEKEVQKAARRFLEKEAL--P-------HIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYE 81 (385)
T ss_dssp SCHHHHHHHHHHHHHHHHHTH--H-------HHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC--c-------cHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHH
Confidence 358899999999999975321 0 001111111123468999999887 6788876543321
Q ss_pred -----Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCC-CCCceEEEEeCCCCeEEEec
Q 007504 95 -----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNV-QGLETTATFDPQTDEFVIHS 166 (601)
Q Consensus 95 -----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~-~~~~TtA~~d~~~~~~vLnt 166 (601)
.+. .+.+|..++..+|..+|+++||++|||++.+|++++|+++|||++|||+ .+++|+|+++ +|+|+||
T Consensus 82 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~--~~g~~ln- 158 (385)
T 2eba_A 82 LERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARRE--GDTWVLN- 158 (385)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC----CEEEEE-
T ss_pred HHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEe--CCEEEEE-
Confidence 122 2345556777889999999999999999999999999999999999999 9999999988 8899999
Q ss_pred CCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 167 p~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|+|++| +..||+++|+|++. ++ . +++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 159 ----G~K~~~s~-~~~Ad~~~v~a~~~-~g--~-~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~f~~ 219 (385)
T 2eba_A 159 ----GTKMWITN-GNLAHLAVIWAKDE-GG--E-VLGFLVP-------TDTPGFQAREVKRKMS---LRASVTSELVLEE 219 (385)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEECC-------EEEEEEE-------TTSTTEEEEECCSBSS---SCSSCEEEEEEEE
T ss_pred ----eeeeccCC-CcccCEEEEEEEeC-CC--c-EEEEEEe-------CCCCCeEecccccccc---cccCceeEEEEcc
Confidence 99999999 89999999999975 22 2 8899999 7789999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++| . .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 220 v~Vp~~~~l-~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 279 (385)
T 2eba_A 220 VRVPESLRL-P------KALGLK------APLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGE-------PLAK 279 (385)
T ss_dssp EEEEGGGBC-T------TCCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGG
T ss_pred EEEcHHHcc-C------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCe-------eHHh
Confidence 999999999 3 343333 4556677899999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+||+|+++.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.|+|+|||+||++
T Consensus 280 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 347 (385)
T 2eba_A 280 KQLVQAKLAEMLAWHTEGLLLAWRLARLKDE-------GK-----LTPAQVSLAKRQNVWKALQAARMARDILGGSGITL 347 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 9999999999999999999999999887652 11 23455789999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++++|||++...+++|++++++..+++.+++
T Consensus 348 ~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 348 EYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp TSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred cChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 24
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.6e-53 Score=450.87 Aligned_cols=351 Identities=22% Similarity=0.235 Sum_probs=301.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHH-HHHHHHHHHccCC----HHHHHHHhhhcC------
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRLS----EEEASMLRSSVD------ 94 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~----~~~gg~~~~~~~------ 94 (601)
.-++||.++++++++|+.++.... ....+...... .++|+.+.+.||. +++||.+.++..
T Consensus 29 ~l~~e~~~l~~~~r~~~~~~~~~~---------~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~e 99 (403)
T 3sf6_A 29 VLSAEEREIRDTVRSVVQRRIKPH---------IASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACL 99 (403)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcChh---------HHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHHHHHHHHH
Confidence 346899999999999997742110 11122222234 6789999999873 556665543211
Q ss_pred ------Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007504 95 ------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (601)
Q Consensus 95 ------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 166 (601)
.+. .+.+|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 ela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln- 176 (403)
T 3sf6_A 100 ELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRS--GDDWILT- 176 (403)
T ss_dssp HHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-
T ss_pred HHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEE--CCEEEEE-
Confidence 121 23456667788899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecc
Q 007504 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (601)
Q Consensus 167 p~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~ 246 (601)
|+|.||+| +..||+++|+|++. .|+++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 177 ----G~K~~is~-a~~Ad~~~v~ar~~-----~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fd~ 236 (403)
T 3sf6_A 177 ----GTKMWITN-GSVADVAVVWARTD-----EGIRGFVVP-------TDTPGFTANTIKSKMS---LRASVTSELVLDG 236 (403)
T ss_dssp ----EEEEEEET-GGGCSEEEEEEEET-----TEEEEEEEE-------TTSTTEEEEECCSCSS---CTTSCEEEEEEEE
T ss_pred ----EEEEeecC-CcccCEEEEEEEeC-----CceEEEEEE-------CCCCCeEecCCCCccC---CCCCceeEEEEcc
Confidence 99999999 89999999999974 479999999 7889999999999999 9999999999999
Q ss_pred cccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 007504 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (601)
Q Consensus 247 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~ 326 (601)
|+||.+++|+. +.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 237 v~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------pi~~ 296 (403)
T 3sf6_A 237 VRLPDSARLPG-------ATSLG------APLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDR-------PIGG 296 (403)
T ss_dssp EEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEEcHHHccCC-------ChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------cchh
Confidence 99999999973 33332 5567788899999999999999999999999999999999 9999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007504 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (601)
Q Consensus 327 ~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 406 (601)
||.+||+|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++
T Consensus 297 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 364 (403)
T 3sf6_A 297 FQLTQQKLADMTLEYGKGFLLALHLGRQKDA-------GE-----LAPEQVSLGKLNNVREAIEIARTARTVLGASGITG 364 (403)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCeEccc
Confidence 9999999999999999999999999887763 11 12456789999999999999999999999999999
Q ss_pred cCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 407 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
+++++++|||++...+++|++++++..+++.+++
T Consensus 365 ~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 398 (403)
T 3sf6_A 365 EYPVMRHANNLESVLTYEGTSEMHTLIIGQALTG 398 (403)
T ss_dssp TSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred cCcHHHHHhhcccceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999985
No 25
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=5e-53 Score=450.79 Aligned_cols=364 Identities=20% Similarity=0.259 Sum_probs=305.7
Q ss_pred cCCCCHHHH-HHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHHHH
Q 007504 13 KAQFDVDEM-KIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEAS 87 (601)
Q Consensus 13 ~~~f~~~~~-~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~gg 87 (601)
+..++...+ .-.+.-++||.++++++++|+.++.. + .....+.......++|+.+.+.||. +++||
T Consensus 11 ~~~~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG 81 (399)
T 3swo_A 11 KSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLK----P-----NVEGWFESATLPSELAKEFGNLGVLGMHLQGYGC 81 (399)
T ss_dssp CCCCCHHHHHTGGGGSCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTC
T ss_pred CccccccccccCCCCCCHHHHHHHHHHHHHHHHhCC----h-----hHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCC
Confidence 444554333 22234568999999999999976321 0 0111122222335689999988873 55676
Q ss_pred HHhhhcC------------Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEE
Q 007504 88 MLRSSVD------------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153 (601)
Q Consensus 88 ~~~~~~~------------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA 153 (601)
.+.++.. .+. .+.+|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|
T Consensus 82 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A 161 (399)
T 3swo_A 82 AGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRA 161 (399)
T ss_dssp CCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEE
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEE
Confidence 5543311 122 23456567788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCC
Q 007504 154 TFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233 (601)
Q Consensus 154 ~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~ 233 (601)
+++ +|+|+|| |+|+|++| +..||+++|+|++. .|+++|+|| .+.|||++.+.|+++|
T Consensus 162 ~~~--~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~-----~g~~~flV~-------~~~pGv~v~~~~~~~G--- 218 (399)
T 3swo_A 162 RRD--GSDWILN-----GTKMWITN-GNLADVATVWAQTD-----DGIRGFLVP-------TDTPGFTANEIHRKLS--- 218 (399)
T ss_dssp EEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEBCT-----TSCEEEEEE-------TTSTTEEEEECCCBSS---
T ss_pred EEe--CCEEEEE-----EEEEeECC-CCccCEEEEEEEeC-----CceEEEEEe-------CCCCCeEeecCcCccc---
Confidence 998 8999999 99999999 89999999999964 468999999 7889999999999999
Q ss_pred CCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007504 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313 (601)
Q Consensus 234 ~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qf 313 (601)
+++++++.|.||||+||.+++|+. |.++. .....+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus 219 ~r~~~~~~v~fd~v~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~f 285 (399)
T 3swo_A 219 LRASVTSELVLDNVRLPASAQLPL-------AEGLS------APLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVF 285 (399)
T ss_dssp CCSSCEEEEEEEEEEECGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred CCCCceeEEEEccEEEcHHHcCCC-------ChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeC
Confidence 999999999999999999999973 33332 55677888999999999999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHH
Q 007504 314 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 393 (601)
Q Consensus 314 g~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~ 393 (601)
|+ ||++||.+||+|+++.+.+++++.+++++++.++. + .+....++++|.++++.+.++++
T Consensus 286 G~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~-----~~~~~~~~~aK~~a~~~a~~v~~ 346 (399)
T 3swo_A 286 DK-------PLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDA-------E-----GVRPEQISLGKLNNVREAIAIAR 346 (399)
T ss_dssp TE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCchHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999887652 1 12345688999999999999999
Q ss_pred HHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 394 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 394 ~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
.|+|+|||+||+++++++++|||++...+++|++++++..+++.+++
T Consensus 347 ~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 393 (399)
T 3swo_A 347 ECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTG 393 (399)
T ss_dssp HHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred HHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999985
No 26
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-52 Score=448.48 Aligned_cols=377 Identities=17% Similarity=0.205 Sum_probs=299.7
Q ss_pred CCHHHHHHHHcCChhhHHHHHHHHHHHhcCCC-CCC---CcccCCC-HHHHHHHHHHHHHHHHHHHHHccCC----HHHH
Q 007504 16 FDVDEMKIVWAGSRHAFQVSDRIARLVASDPA-FRK---DNRAMLS-RKELFKNTLRKAAYAWKRIIELRLS----EEEA 86 (601)
Q Consensus 16 f~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~-~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~----~~~g 86 (601)
|+...|.+. -++|+.++++++++|++++.. ... ....... ....+. .......+|+.+.+.||. ++
T Consensus 14 ~~~~~m~~~--~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gl~~l~~P~-- 88 (428)
T 2wbi_A 14 IDTTGQLFV--QTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWG-KPLVIDKLKEMAKVEGLWNLFLPA-- 88 (428)
T ss_dssp --------C--CCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCS-CCHHHHHHHHHHHHTTCCSTTCHH--
T ss_pred CCCccCCCC--CCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccC-CcccHHHHHHHHHHCCCCeecCCC--
Confidence 667778753 458999999999999987521 000 0000000 000000 002346789999999983 44
Q ss_pred HHHhhh---------cCC----chhhHhhh--hchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCC-CCCCCCCCc
Q 007504 87 SMLRSS---------VDE----PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLE 150 (601)
Q Consensus 87 g~~~~~---------~~~----~~~~~~~~--~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~ 150 (601)
|.+.+. ++. +.++..+. .++...|..+|+++||++|||++++|++++|+++|||+ +|||+.+++
T Consensus 89 G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~ 168 (428)
T 2wbi_A 89 VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIE 168 (428)
T ss_dssp HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCC
T ss_pred CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccce
Confidence 332221 111 11222221 24556788899999999999999999999999999999 999999999
Q ss_pred eEEEEeCCCCeEEEecCCCCceeeccCCCCCC--CcEEEEEEEEccCC--CCCceEEEEEeeccCCCCCCCCCeEEeeCC
Q 007504 151 TTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIG 226 (601)
Q Consensus 151 TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~--Ad~~lV~A~~~~~~--~~~G~~~flV~~r~~~~~~~~pGv~i~~~~ 226 (601)
|+|+++ +|+|+|| |+|+||+| +.. ||+++|+|++..++ +..|+++|+|| .+.|||++.+.|
T Consensus 169 t~A~~~--~~g~~ln-----G~K~~is~-a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~ 233 (428)
T 2wbi_A 169 CSIQRD--EDSYVIN-----GKKWWSSG-AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVP-------MNTPGVKIIRPL 233 (428)
T ss_dssp CEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCCTTSCGGGCEEEEEEE-------TTSTTEEEEEEC
T ss_pred EEEEEe--CCEEEEE-----eEEeccCC-CCCCcCCEEEEEEEeCCccCCCCCceEEEEEE-------CCCCcEEecCCC
Confidence 999998 8999999 99999999 777 99999999986442 34689999999 788999999999
Q ss_pred CcCCCCCCCCcc---ceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 007504 227 MKFGNGAYNTMD---NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIA 303 (601)
Q Consensus 227 ~~~G~~~~~~~~---~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a 303 (601)
+++| +++++ +++|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+
T Consensus 234 ~~~G---~~~~~~~~~~~v~fddv~VP~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a 298 (428)
T 2wbi_A 234 SVFG---YTDNFHGGHFEIHFNQVRVPATNLILG------EGRGFE------ISQGRLGPGRIHHCMRTVGLAERALQIM 298 (428)
T ss_dssp CBTT---BCCGGGCCEEEEEEEEEEEEGGGBCSC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc---cCCCCCCCeEEEEeCceEECHHHhcCC------ccchHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99985 8999999999999999984 454443 4556677899999999999999999999
Q ss_pred HHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHH
Q 007504 304 TRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSL 383 (601)
Q Consensus 304 ~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~ 383 (601)
++|+++|+|||+ ||++||.+|++|++|.+.+++++.+++++++.+++.- ..+....++++|++
T Consensus 299 ~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~g----------~~~~~~~~~~aK~~ 361 (428)
T 2wbi_A 299 CERATQRIAFKK-------KLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG----------SAGAKKEIAMIKVA 361 (428)
T ss_dssp HHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHTHHHHHHHHHH
T ss_pred HHHHhhCcccCC-------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CcchHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999988876410 02345668999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHHHHHh
Q 007504 384 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 444 (601)
Q Consensus 384 ~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~ 444 (601)
+++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..+++.+|+.+++
T Consensus 362 a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 422 (428)
T 2wbi_A 362 APRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQAK 422 (428)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999988754
No 27
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=1.6e-52 Score=446.68 Aligned_cols=354 Identities=18% Similarity=0.242 Sum_probs=302.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHH-HHHHHHHHHccC-----CHHHHHHHh--hhcCC--
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRL-----SEEEASMLR--SSVDE-- 95 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~-----~~~~gg~~~--~~~~~-- 95 (601)
.-++||.++++++++|+.+... + .....+....+. .++|+.+.+.|| |+++||.+. +....
T Consensus 4 ~~~~~~~~l~~~~r~~~~~~~~--~-------~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~ 74 (397)
T 3mpi_A 4 NLSKELQMLQKEVRNFVNKKIV--P-------FADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMI 74 (397)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTT--T-------THHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC--h-------hHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHH
Confidence 3468999999999999986431 1 011222222234 578999999997 678888766 43211
Q ss_pred ----------chh--hHhhhhchHH-HHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeE
Q 007504 96 ----------PAF--TDLHWGMFVP-AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEF 162 (601)
Q Consensus 96 ----------~~~--~~~~~~l~~~-~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~ 162 (601)
+.+ +.+| .+++. .|..+|+++|+++|||++.+|++++|+++|||++|||+.++.|+|+++ +|+|
T Consensus 75 v~eela~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~ 151 (397)
T 3mpi_A 75 VTEEIARGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDK--GDHW 151 (397)
T ss_dssp HHHHHHHHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEEC--SSEE
T ss_pred HHHHHHhhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEe--CCEE
Confidence 222 2334 45666 889999999999999999999999999999999999999999999998 8899
Q ss_pred EEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEE-eeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceE
Q 007504 163 VIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIV-QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (601)
Q Consensus 163 vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV-~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~ 241 (601)
+|| |+|.|++| +..||+++|+|++..+++..|+++|+| | .+.|||++ +.|+++| +++++++.
T Consensus 152 ~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~~-------~~~~Gv~v-~~~~~~G---~~~~~~~~ 214 (397)
T 3mpi_A 152 LLN-----GSKTWISN-AAQADVLIYYAYTDKAAGSRGLSAFVIEP-------RNFPGIKT-SNLEKLG---SHASPTGE 214 (397)
T ss_dssp EEE-----EEEEEEET-TTTCSSEEEEEESCGGGGGGSEEEEEECT-------TTSTTEEE-EECCCSS---CTTSCEEE
T ss_pred EEE-----EEEEeeCC-CcccCEEEEEEEcCCCCCCCceEEEEEEc-------CCCCCeEe-ccCcccc---CcCCceeE
Confidence 999 99999999 899999999999876555678999999 8 77899999 8899999 99999999
Q ss_pred EEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCc
Q 007504 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (601)
Q Consensus 242 v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e 321 (601)
|.||||+||.+++++. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 215 v~fddv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~------ 276 (397)
T 3mpi_A 215 LFLDNVKVPKENILGK------PGDGAR------IVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGK------ 276 (397)
T ss_dssp EEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE------
T ss_pred EEEeeEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC------
Confidence 9999999999999984 454443 5567788899999999999999999999999999999999
Q ss_pred ccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007504 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (601)
Q Consensus 322 ~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG 401 (601)
||++||.+|++|++|.+.+++++.+++++++.+++ +. .+....++++|.++++.+.++++.|+|+|||
T Consensus 277 -~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg 344 (397)
T 3mpi_A 277 -PIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDE-------GR----LNNGLDVAMAKYAAGEAVSKCANYAMRILGA 344 (397)
T ss_dssp -EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----TEEHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred -chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CccHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999887652 11 2345668899999999999999999999999
Q ss_pred ccccccCChhhhccccccccccCcchHHHHHHHH-HHH
Q 007504 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA-RFL 438 (601)
Q Consensus 402 ~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia-~~l 438 (601)
+||+++++++++|||++...+++|++++++..|+ +.+
T Consensus 345 ~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 345 YGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp GGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 776
No 28
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=7.8e-52 Score=440.64 Aligned_cols=354 Identities=20% Similarity=0.241 Sum_probs=296.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHHHHHHhhhcC-------
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRSSVD------- 94 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~gg~~~~~~~------- 94 (601)
.-++||.++++++++|+.+... + .....+........+|+.+.+.||. +++||.+.++..
T Consensus 13 ~~~~e~~~l~~~~r~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~ee 83 (392)
T 1siq_A 13 QLTTDEILIRDTFRTYCQERLM----P-----RILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARE 83 (392)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----c-----chHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHH
Confidence 3458999999999999975321 0 0011111112335689999999974 556665433211
Q ss_pred -----Cch--hhHhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007504 95 -----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (601)
Q Consensus 95 -----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 167 (601)
.+. .+.+|..+++.+|..+|+++||++|+|++.+|++++|+++|||++|||+.+++|+|++++++|+|+||
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~ln-- 161 (392)
T 1siq_A 84 LERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN-- 161 (392)
T ss_dssp HHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEE--
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEE--
Confidence 121 22345556677888999999999999999999999999999999999999999999998667899999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEeccc
Q 007504 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (601)
Q Consensus 168 ~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v 247 (601)
|+|+|++| +..||+++|+|++.. .++++|+|| .+.|||++.++|+++| +++++++.|.||||
T Consensus 162 ---G~K~~vs~-~~~Ad~~~v~a~~~~----g~~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v 223 (392)
T 1siq_A 162 ---GTKTWITN-SPMADLFVVWARCED----GCIRGFLLE-------KGMRGLSAPRIQGKFS---LRASATGMIIMDGV 223 (392)
T ss_dssp ---EEEEEEET-GGGCSEEEEEEEETT----SCEEEEEEE-------TTCTTEECCBCCCCSS---STTSCEEEEEEEEE
T ss_pred ---EEEEeecC-CcccCEEEEEEEECC----CCEEEEEEe-------CCCCCeEecccccccc---ccCCceEEEEEccE
Confidence 99999999 899999999999742 248899999 7789999999999999 99999999999999
Q ss_pred ccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 007504 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (601)
Q Consensus 248 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~ 327 (601)
+||.+++++. ..| +. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 224 ~Vp~~~~lg~-----~~g--~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~ 283 (392)
T 1siq_A 224 EVPEENVLPG-----ASS--LG------GPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGV-------PLARN 283 (392)
T ss_dssp EEEGGGBCTT-----CCS--SH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCc-----ccC--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCc-------chhhh
Confidence 9999999974 112 22 3456677889999999999999999999999999999999 99999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007504 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (601)
Q Consensus 328 q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 407 (601)
|.+||+|++|.+.+++++.+++++++.++. +. .....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 284 q~vq~~la~~~~~~~~ar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~~~~ 351 (392)
T 1siq_A 284 QLIQKKLADMLTEITLGLHACLQLGRLKDQ-------DK-----AAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDE 351 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC
Confidence 999999999999999999999999877652 11 124457899999999999999999999999999999
Q ss_pred CChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 408 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
++++++|||++...+++|++++++..+++.+++
T Consensus 352 ~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg 384 (392)
T 1siq_A 352 YHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 384 (392)
T ss_dssp GSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred CcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 29
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.7e-52 Score=438.93 Aligned_cols=318 Identities=16% Similarity=0.188 Sum_probs=274.0
Q ss_pred HHHHHHHHHHccC-----CHHHHHHHhhhcC------------Cchhh--HhhhhchHHHHccCCCHHHHHhhHHHHhcc
Q 007504 69 AAYAWKRIIELRL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 129 (601)
Q Consensus 69 ~~~~~~~~~~~g~-----~~~~gg~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g 129 (601)
...+|+.+.+.|| |+++||.+.++.. .+.++ .+|..+++..|. +|+++||++|||++.+|
T Consensus 26 ~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~~G 104 (366)
T 1r2j_A 26 PRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELTSG 104 (366)
T ss_dssp CHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHhCC
Confidence 4568999999997 6788876543321 12232 344446777888 99999999999999999
Q ss_pred cceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeec
Q 007504 130 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 209 (601)
Q Consensus 130 ~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r 209 (601)
+ ++|+++|||++|||+.+++|+|+++ +|+|+|| |+|.|++| +..||+++|+|++.. . |+++|+||
T Consensus 105 ~-~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~---~-g~~~flV~-- 169 (366)
T 1r2j_A 105 K-LAAVGFSERQAGSDLSAMRTRVRLD--GDTAVVD-----GHKVWTTA-AAYADHLVVFGLQED---G-SGAVVVVP-- 169 (366)
T ss_dssp --CEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEETT-TTTCSEEEEEEBCSS---S-CCEEEEEE--
T ss_pred C-eeEEEeCCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEecccC-CcccCEEEEEEEeCC---C-ceEEEEEE--
Confidence 9 9999999999999999999999998 7899999 99999999 899999999998742 1 78999999
Q ss_pred cCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhH-HhHHHHHHHHh
Q 007504 210 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLL-YGTMVYVRQTI 288 (601)
Q Consensus 210 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~-~~~l~~~r~~~ 288 (601)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .. ...+..+|+.+
T Consensus 170 -----~~~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~~l~~~r~~~ 229 (366)
T 1r2j_A 170 -----ADTPGVRVERVPKPSG---CRAAGHADLHLDQVRVPAGAVLAG------SGASLP------MLVAASLAYGRKSV 229 (366)
T ss_dssp -----TTSTTEEEEECSSCSS---STTSCCEEEEEEEEEEEGGGBCTT------TTSCTT------TTTHHHHHHHHHHH
T ss_pred -----CCCCCeEecCCcCCcc---CCCCCeeEEEEeeEEEcHHHcCCC------CCccHH------HHHHHHhhHHHHHH
Confidence 7789999999999999 999999999999999999999984 444443 34 55677899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 007504 289 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 368 (601)
Q Consensus 289 ~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (601)
++.++|+++++++.+++|+++|+|||+ ||++||.+||+|++|.+.+++++.+++++++.+++ +.
T Consensus 230 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~-------g~-- 293 (366)
T 1r2j_A 230 AWGCVGILRACRTAAVAHARTREQFGR-------PLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDE-------GS-- 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC--
Confidence 999999999999999999999999999 99999999999999999999999999999876652 10
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHHH
Q 007504 369 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 369 ~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 440 (601)
.+....++++|.++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..+++.+++
T Consensus 294 --~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg 363 (366)
T 1r2j_A 294 --PEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA 363 (366)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence 1234568899999999999999999999999999999999999999999999999999999999998874
No 30
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=2.4e-50 Score=435.41 Aligned_cols=369 Identities=15% Similarity=0.140 Sum_probs=297.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcc-cCCCHHHHHHHHHHHH--HHHHHHHHHccC-----CHHHHHHHhhhcC----
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKA--AYAWKRIIELRL-----SEEEASMLRSSVD---- 94 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~g~-----~~~~gg~~~~~~~---- 94 (601)
-++||.++++++|+|++++........ ...+... ..+. ..+|+.+.+.|| |+++||.+.++..
T Consensus 7 ~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 7 LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSP-----LRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCH-----HHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcHHHHHhhcccccc-----CcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 468999999999999987532100000 0000111 0222 578999999997 6788886544321
Q ss_pred --------Cchhh-HhhhhchHHHHccCCCHHHHHhhHHHHhcc--cceeEEeccCCCCCC-----CCCCCceEEEEeCC
Q 007504 95 --------EPAFT-DLHWGMFVPAIKGQGTDEQHQKWLPLAYKM--EIIGCYAQTELGHGS-----NVQGLETTATFDPQ 158 (601)
Q Consensus 95 --------~~~~~-~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g--~~~~~~a~tE~~~Gs-----d~~~~~TtA~~d~~ 158 (601)
.+.++ .....++...|..+|+++ +++|||++++| +.++|+++|||++|| |+.+++|+|+++
T Consensus 82 ~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~-- 158 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFATGLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLE-- 158 (438)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEE--
T ss_pred HHHHHhhChhHHHHHHHhhHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEe--
Confidence 11221 112235566788899999 89999999996 589999999999998 588999999998
Q ss_pred CCeEEEecCCCCceeeccCCCCC-----CCcEEEEEEEEcc------CCCCCceEEEEEeeccCCCCCCCCC-eEEeeCC
Q 007504 159 TDEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARLIT------DGQDHGVNGFIVQLRSLEDHSPLPG-ITIGDIG 226 (601)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~~~~-----~Ad~~lV~A~~~~------~~~~~G~~~flV~~r~~~~~~~~pG-v~i~~~~ 226 (601)
+|+|+|| |+|+||+| +. .||+++|+|++.. .++..|+++|+||..+.+ ...|| |++.+.|
T Consensus 159 g~g~~ln-----G~K~~is~-a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~--~~~pG~v~v~~~~ 230 (438)
T 3mkh_A 159 GDEWVIN-----GEKMWATN-CAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLD--RNGEGSFEVLRHV 230 (438)
T ss_dssp TTEEEEE-----EEECSCTT-TTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHH--HHCTTSEEEEECC
T ss_pred CCEEEEE-----eEEEEecC-CCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccc--cCCCCcEEecCcC
Confidence 8999999 99999999 65 7999999999853 123468999999932100 01388 9999999
Q ss_pred CcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007504 227 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 306 (601)
Q Consensus 227 ~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Y 306 (601)
+++| +++++++.|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|
T Consensus 231 ~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~y 295 (438)
T 3mkh_A 231 ATPG---HTSVSGPHVRYTNVRVPTKNVLCP------AGQGAK------VAFGAFDGSAVLVGAMGVGLMRAAFDAALKF 295 (438)
T ss_dssp CCSS---CTTCCCCEEEEEEEEEEGGGEEEC------TTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcC---CcCCCceEEEECcEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999984 455443 5667788899999999999999999999999
Q ss_pred hhhccccC-CCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHH
Q 007504 307 SAVRRQFG-SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 385 (601)
Q Consensus 307 a~~R~qfg-~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t 385 (601)
+++|+||| + ||++||.+|++|++|.+.+++++.+++++++.+++ +. .........++++|++++
T Consensus 296 a~~R~~~g~~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-~~~~~~~~~~~~aK~~a~ 360 (438)
T 3mkh_A 296 AKEDNRGGAV-------PLLERQAFADLLSGVKIQTEAARALTWKAAHAMEN-------GP-GDYDARRELALAAKVFCS 360 (438)
T ss_dssp HHHCCTTCSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CS-SCHHHHHHHHHHHHHHHH
T ss_pred HhhcEeCCCe-------eccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-CcchhHHHHHHHHHHHHH
Confidence 99999999 7 99999999999999999999999999999887763 11 111223344678999999
Q ss_pred HHHHHHHHHHHHHhccccccccCChhhhccccccccccCcch-HHHHHHHHHHHHHH
Q 007504 386 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMKT 441 (601)
Q Consensus 386 ~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~~ 441 (601)
+.+.++++.|+|+|||+||+++++++++|||++...+++|++ ++++.++++.+|+.
T Consensus 361 e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 361 EAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP 417 (438)
T ss_dssp HHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 99999999999974
No 31
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=2.6e-48 Score=419.51 Aligned_cols=364 Identities=15% Similarity=0.110 Sum_probs=291.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhc-------
Q 007504 27 GSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV------- 93 (601)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~------- 93 (601)
-++|+.++++++++|++++........ ......+.++ ....+|+.+.+.|| |+++||.+.++.
T Consensus 6 ~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~----~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 6 LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQ----ATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHH----TTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCC----ChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 358899999999999987532110000 0000111111 12578999999997 577777653321
Q ss_pred -----CCchh--hHhhhhchHHHHccCCCHHHHHhhHHHHh--cccceeEEeccCCCCCC-----CCCCCceEEEEeCCC
Q 007504 94 -----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAY--KMEIIGCYAQTELGHGS-----NVQGLETTATFDPQT 159 (601)
Q Consensus 94 -----~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~--~g~~~~~~a~tE~~~Gs-----d~~~~~TtA~~d~~~ 159 (601)
+.+.+ +..| .++...|..+|+++||++|||++. +|++++|+++|||++|| |+.+++|+|+++ +
T Consensus 82 ela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~--~ 158 (439)
T 2c12_A 82 ELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKV--G 158 (439)
T ss_dssp HHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEE--T
T ss_pred HHHhhChHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEc--C
Confidence 11222 2233 356667889999999999999999 69999999999999998 588899999998 8
Q ss_pred CeEEEecCCCCceeeccCCCCC-----CCcEEEEEEEE-c----cC----CCCCceEEEEEeeccCCCCCCCC------C
Q 007504 160 DEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARL-I----TD----GQDHGVNGFIVQLRSLEDHSPLP------G 219 (601)
Q Consensus 160 ~~~vLntp~~~G~K~~v~~~~~-----~Ad~~lV~A~~-~----~~----~~~~G~~~flV~~r~~~~~~~~p------G 219 (601)
|+|+|| |+|+||+| +. .||+++|+|++ . .+ ++..|+++|+||. +.| |
T Consensus 159 ~g~~ln-----G~K~~is~-~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~-------~~pGv~~~~G 225 (439)
T 2c12_A 159 NEWVIS-----GEKLWPSN-SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTR-------ETIANNKKDA 225 (439)
T ss_dssp TEEEEE-----EEEECCTT-TTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECH-------HHHHTSCGGG
T ss_pred CEEEEE-----eEEEeecC-CCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEEC-------CCCcccCCCc
Confidence 999999 99999999 65 89999999998 5 22 3446899999994 455 8
Q ss_pred eEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHH
Q 007504 220 ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRA 299 (601)
Q Consensus 220 v~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~a 299 (601)
|++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. . .....+...|+.+++.++|+++++
T Consensus 226 v~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~----~-~~~~~l~~~r~~~aa~~~G~a~~a 291 (439)
T 2c12_A 226 YQILGEPELAG---HITTSGPHTRFTEFHVPHENLLCT------PGLKAQ----G-LVETAFAMSAALVGAMAIGTARAA 291 (439)
T ss_dssp EEEEECCCBSS---CTTCCCCEEEEEEEEEEGGGBCSC------TTHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeCCcccccc---cCCCCceEEEEccEEecHHHcCCC------CCccHH----H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999984 343321 0 234567789999999999999999
Q ss_pred HHHHHHHhhh-ccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 007504 300 VCIATRYSAV-RRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTA 378 (601)
Q Consensus 300 l~~a~~Ya~~-R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (601)
++.+++|+++ |+|||+ ||++||.+|++|++|.+.+++++.+++++++.++. +.. ........++
T Consensus 292 l~~a~~ya~~rr~~~G~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~~-~~~~~~~~~~ 356 (439)
T 2c12_A 292 FEEALVFAKSDTRGGSK-------HIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLED-------EAL-EWKVKLEMAM 356 (439)
T ss_dssp HHHHHHHHHHCCTTSSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TTS-CHHHHHHHHH
T ss_pred HHHHHHHHhhceeeCCe-------ehhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCc-cchhhHHHHH
Confidence 9999999996 789998 99999999999999999999999999999876641 111 1111344578
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcch-HHHHHHHHHHHH
Q 007504 379 GLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLM 439 (601)
Q Consensus 379 ~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll 439 (601)
++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++ ++++.++++.+.
T Consensus 357 ~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~~~~~~~~i~~~l~ 418 (439)
T 2c12_A 357 QTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 418 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeecCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988 799999987553
No 32
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=6.3e-48 Score=411.06 Aligned_cols=359 Identities=14% Similarity=0.066 Sum_probs=283.9
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHH-hhhcC-----
Q 007504 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASML-RSSVD----- 94 (601)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~-~~~~~----- 94 (601)
.-++||.++++.+++|+.. +.+ +....+....+..++|+.+.+.|| |+++||.+ .++..
T Consensus 8 ~lt~e~~~~~~~~r~~~~~---~~~-------~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~ 77 (395)
T 3mxl_A 8 PLTPAGRTVVDLLAGVIPR---ISA-------EAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATAL 77 (395)
T ss_dssp CCSHHHHHHHHHHTTTHHH---HHH-------HHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---Hhh-------chHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHH
Confidence 3468999999999999853 111 112222222344678999999887 67888776 44321
Q ss_pred -------Cchh--hHhhhhchHHHH--ccCCCHHHH---HhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007504 95 -------EPAF--TDLHWGMFVPAI--KGQGTDEQH---QKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (601)
Q Consensus 95 -------~~~~--~~~~~~l~~~~i--~~~Gt~eq~---~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~ 160 (601)
.+.+ +.+|..+....+ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..++|+ + +|
T Consensus 78 eel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t~---~--~~ 150 (395)
T 3mxl_A 78 MRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHSD---G--AG 150 (395)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEEC---S--SS
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEEe---c--CC
Confidence 1222 234444444433 356999999 9999999999999999999998763 333332 3 78
Q ss_pred eEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccce
Q 007504 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (601)
Q Consensus 161 ~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~ 240 (601)
+|+|| |+|+|||| +..||+++|+|++..+++..|+++|+|| .+.|||++.+.|+++| +++++++
T Consensus 151 g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~ 214 (395)
T 3mxl_A 151 GWLLS-----GRKVLVSM-APIATHFFVHAQRRDDDGSVFLAVPVVH-------RDAPGLTVLDNWDGLG---MRASGTL 214 (395)
T ss_dssp CEEEE-----EEEEEETT-GGGCSEECCCEEEECTTSCEEEECCCEE-------TTCTTEEEECCCCBSS---CTTSCCE
T ss_pred EEEEe-----eEEEEecC-ccccCEEEEEEEeCCCCCCCceEEEEEE-------CCCCceEeCCCchhcC---CCCCCcc
Confidence 99999 99999999 8999999999998766666789999999 7789999999999999 9999999
Q ss_pred EEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007504 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (601)
Q Consensus 241 ~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~ 320 (601)
+|.||||+||.+++|+.. +.|.++. .....+..+|+.+++.++|+++++++.+++|++ |+
T Consensus 215 ~v~f~~v~Vp~~~~lg~~----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r----- 274 (395)
T 3mxl_A 215 EVVFDRCPVRADELLERG----PVGARRD------AVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GR----- 274 (395)
T ss_dssp EEEEEEEEECGGGCCEEE----ESSCCCT------THHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TT-----
T ss_pred eEEEcceEcCHHHhcCCC----CCCccHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC-----
Confidence 999999999999999731 1343332 233334558999999999999999999999998 45
Q ss_pred cccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-hhhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 007504 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTTTATADGIEECRKLC 399 (601)
Q Consensus 321 e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~ 399 (601)
||++||.+|++|++|.+.+++++.+++++++.++....... .+... .......++++|.++++.+.++++.|+|+|
T Consensus 275 --~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~ 351 (395)
T 3mxl_A 275 --GGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDLS-GDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLV 351 (395)
T ss_dssp --CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999888775332111 11110 112345678899999999999999999999
Q ss_pred ccccccccCChhhhcccccccc-ccCcchHHHHHHHHHHHHH
Q 007504 400 GGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 400 GG~G~~~~~~l~~~~rd~~~~~-~~~G~~~vl~~~ia~~ll~ 440 (601)
||+||+++++++++|||++... +++|++++++.++++.+|+
T Consensus 352 Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg 393 (395)
T 3mxl_A 352 GGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG 393 (395)
T ss_dssp CGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred ChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999 9999999999999999874
No 33
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=9.2e-47 Score=407.48 Aligned_cols=366 Identities=13% Similarity=0.074 Sum_probs=285.0
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHH-h
Q 007504 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASML-R 90 (601)
Q Consensus 17 ~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~-~ 90 (601)
++.+|.+ .-++|+.++++.+++|+.. +.. +....+.......++|+.+.+.|| |+++||.+ .
T Consensus 12 ~~~~m~~--~lt~e~~~l~~~~r~~~~~---~~~-------~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~ 79 (439)
T 3m9v_A 12 STTGLYA--PVTPAGRVLLDRLAAHLPR---IRS-------TAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVD 79 (439)
T ss_dssp CCSTTSS--CSSHHHHHHHHHHHTTHHH---HHH-------HHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCC
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHH---Hhh-------hHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCC
Confidence 5666765 3458999999999999853 110 112222222344578999999887 68888766 4
Q ss_pred hhcC------------Cchh--hHhhhhchHHHH--ccCCCHHH---HHhhHHHHhcccceeEEeccCCCCCCCCCCCce
Q 007504 91 SSVD------------EPAF--TDLHWGMFVPAI--KGQGTDEQ---HQKWLPLAYKMEIIGCYAQTELGHGSNVQGLET 151 (601)
Q Consensus 91 ~~~~------------~~~~--~~~~~~l~~~~i--~~~Gt~eq---~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~T 151 (601)
+... .+.+ +.+|..++...+ ..+||++| |++|||++.+|++++|+++|||+++ +..++|
T Consensus 80 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~~~t 157 (439)
T 3m9v_A 80 RLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTTLRP 157 (439)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCEEEE
T ss_pred CHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCceee
Confidence 3311 1222 234443444433 35699999 9999999999999999999999854 444444
Q ss_pred EEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCC
Q 007504 152 TATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 231 (601)
Q Consensus 152 tA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~ 231 (601)
+ + +|+|+|| |+|+|+|| +.+||+++|+|++..+++.+|+++|+|| .+.|||+|.+.|+++|
T Consensus 158 ~---~--~~g~vln-----G~K~~~s~-a~~Ad~~~v~art~~~~~~~g~~~flVp-------~~~pGv~i~~~~~~~G- 218 (439)
T 3m9v_A 158 D---G--AGGWLLS-----GRKTLVSM-APVGTHFVINARTDGTDGPPRLASPVVT-------RDTPGFTVLDNWDGLG- 218 (439)
T ss_dssp C---S--SSCEEEE-----EEEEEETT-GGGCSEEEECEEECC--CCCCEEEEEEE-------TTCTTEEECCCCCCSS-
T ss_pred c---c--CCEEEEE-----eEEEeecC-ccccCEEEEEEEecCCCCCceeEEEEEE-------CCCCCeEECCCcccCC-
Confidence 3 3 7899999 99999999 8999999999999766666789999999 7789999999999999
Q ss_pred CCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q 007504 232 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR 311 (601)
Q Consensus 232 ~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~ 311 (601)
++++++++|.||||+||.+++|+.. +.|.++. .....+..+|+.+++.++|+++++++.+++|++
T Consensus 219 --~~~~~~~~v~fddv~VP~~~~lg~~----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~--- 283 (439)
T 3m9v_A 219 --MRASGTVDIVFDDCPIPADHVLMRD----PVGARND------AVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE--- 283 (439)
T ss_dssp --CTTSCCEEEEEEEEEECGGGEEECC----C--CCCG------GGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH---
T ss_pred --cCCCCceeEEEeeeEcCHHHccCCC----CCCchHH------HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 9999999999999999999999831 1343332 222334458899999999999999999999998
Q ss_pred ccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHhHHHHHHHHHHH
Q 007504 312 QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS-TLPEAHACTAGLKSLTTTATAD 390 (601)
Q Consensus 312 qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aK~~~t~~a~~ 390 (601)
|+ ||++||.+|++|+++.+.+++++.+++++++.++....... .+.. ........++++|.++++.+.+
T Consensus 284 --~r-------~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~a~~~a~~ 353 (439)
T 3m9v_A 284 --RR-------PEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLS-GDMDERGRQMMRHFQCAKLAVNRLAPE 353 (439)
T ss_dssp --TC-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 45 89999999999999999999999999998887765332110 0000 0112345677899999999999
Q ss_pred HHHHHHHHhccccccccCChhhhcccccccc-ccCcchHHHHHHHHHHHHH
Q 007504 391 GIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 440 (601)
Q Consensus 391 ~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~-~~~G~~~vl~~~ia~~ll~ 440 (601)
+++.|+|+|||+||+++++++++|||++... +++|++++++..+++.+|+
T Consensus 354 v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~lg 404 (439)
T 3m9v_A 354 IVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALG 404 (439)
T ss_dssp HHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 9999999999999999985
No 34
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=3.7e-46 Score=399.68 Aligned_cols=352 Identities=11% Similarity=-0.048 Sum_probs=278.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC--------
Q 007504 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (601)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~-------- 94 (601)
++|+.++++.+++|+.+ +.+ .....+........+|+.+.+.|| |+++||.+.++..
T Consensus 19 ~~~~~~l~~~~r~~~~~---~~~-------~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 88 (414)
T 2or0_A 19 FQGMGRVLDRIEVVAEE---IRG-------QAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGV 88 (414)
T ss_dssp ----CHHHHHHHHTHHH---HHH-------HHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH---HHH-------hHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999863 111 011112222234568999998887 6788876543321
Q ss_pred ----Cchhh--HhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007504 95 ----EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (601)
Q Consensus 95 ----~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 168 (601)
.+.++ ..| .++...|..+|+++||++|+| +|+.++|+++| | +|+|+++ +|+|+||
T Consensus 89 a~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~--~~g~~ln--- 149 (414)
T 2or0_A 89 AALDGASGWVTGIV-GVHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPV--DGGYVLK--- 149 (414)
T ss_dssp HHHCHHHHHHHHHH-TTHHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEE--TTEEEEE---
T ss_pred HhhChHHHHHHHHH-HHHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEE--CCeEEEE---
Confidence 12222 334 467788999999999999999 79999999998 4 6899998 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEccCCCCC---ceEEEEEeeccCCCCCCCCCeEEe-eCCCcCCCCCCCCccceEEEe
Q 007504 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDH---GVNGFIVQLRSLEDHSPLPGITIG-DIGMKFGNGAYNTMDNGVLRF 244 (601)
Q Consensus 169 ~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~---G~~~flV~~r~~~~~~~~pGv~i~-~~~~~~G~~~~~~~~~~~v~f 244 (601)
|+|+|++| +..||+++|+|++..+++.. |+++|+|| .+ ||++. +.|+++| +++++++.|.|
T Consensus 150 --G~K~~is~-a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~-------~~--gv~v~~~~~~~~G---~r~~~~~~v~f 214 (414)
T 2or0_A 150 --GRWSFSSG-TDHCQWAFLGAMVGDGEGGIATPSSLHVILP-------RT--DYQIVEDTWDVIG---LRGTGSKDLIV 214 (414)
T ss_dssp --EEEEEETT-GGGCSEEEEEEEECC-----CCCSEEEEEEE-------GG--GCEEETTCCCBSS---CGGGCCEEEEE
T ss_pred --eeEeccCC-CchhhEEEEEEEecCCCCCcccceeEEEEEE-------hh--hcEEecCCCcccc---CcccCCCcEEE
Confidence 99999999 89999999999986432333 89999999 33 89999 9999999 99999999999
Q ss_pred cccccCcCccccccccccC--CC----ceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc-CCCC
Q 007504 245 EHVRIPRNQMLMRVSQVTR--EG----KYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF-GSKN 317 (601)
Q Consensus 245 d~v~VP~~~lL~~~~~v~~--~g----~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qf-g~~~ 317 (601)
|||+||.+++|+....+.. .| .+.. .....+...|+.+++.++|+++++++.+++|+++|+|| |+
T Consensus 215 d~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~-- 286 (414)
T 2or0_A 215 DGAFVPGYRTLNAAKVMDGRAQKEAGRPEPL------FNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQ-- 286 (414)
T ss_dssp EEEEEEGGGEEEHHHHHHSHHHHHHTCSCSG------GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSC--
T ss_pred ccEEecHHHeeccccccccCCCccccCCCcc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Confidence 9999999999974211000 11 0111 22345667899999999999999999999999999999 98
Q ss_pred CCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007504 318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 397 (601)
Q Consensus 318 ~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q 397 (601)
||++||.+|++|++|.+.+++++.+++++++.+++... .+.. ...+....++++|+++++.+.++++.|+|
T Consensus 287 -----~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q 357 (414)
T 2or0_A 287 -----KIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVD---AGKE-ITFEERAIGRRTQIAAAWRAVRAADEIFA 357 (414)
T ss_dssp -----BGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764322 1221 11245667899999999999999999999
Q ss_pred HhccccccccCChhhhccccccccccCc-chHHHHHHHHHHHHH
Q 007504 398 LCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 440 (601)
Q Consensus 398 ~~GG~G~~~~~~l~~~~rd~~~~~~~~G-~~~vl~~~ia~~ll~ 440 (601)
+|||+||+++++++++|||++...+++| ++++++..+++.+|+
T Consensus 358 ~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~~~lg 401 (414)
T 2or0_A 358 RAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASALTQLG 401 (414)
T ss_dssp TSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHHHHTT
T ss_pred hhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHHHHhC
Confidence 9999999999999999999999999999 999999999999874
No 35
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=7e-45 Score=387.42 Aligned_cols=351 Identities=13% Similarity=0.038 Sum_probs=277.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC------------C
Q 007504 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------------E 95 (601)
Q Consensus 33 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------------~ 95 (601)
++++.+++|+.. +.+. ....+........+|+.+.+.|| |+++||.+.++.. .
T Consensus 11 ~l~~~~~~~~~~---~~~~-------~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~ 80 (394)
T 2rfq_A 11 EVMQRLDALLPT---LRER-------AQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACG 80 (394)
T ss_dssp HHHHHHHHHHHH---HHHT-------HHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---HHHh-------HHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence 588888888853 1110 01122222234578999998887 6788876543311 1
Q ss_pred chhh--HhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCcee
Q 007504 96 PAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173 (601)
Q Consensus 96 ~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K 173 (601)
+.++ ..| .++...|..+|+++|+++|+| +|+.++|+++| | .|+|+++ +|+|+|| |+|
T Consensus 81 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~--~~g~~ln-----G~K 139 (394)
T 2rfq_A 81 STGWVSSII-GVHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVV--DGGYTVN-----GAW 139 (394)
T ss_dssp HHHHHHHHH-HHHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEE--TTEEEEE-----EEE
T ss_pred hHHHHHHHH-HHHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEe--CCeEEEe-----eeE
Confidence 2222 233 366778899999999999998 79999999998 3 5899998 7899999 999
Q ss_pred eccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCc
Q 007504 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 253 (601)
Q Consensus 174 ~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~ 253 (601)
+|+|| +.+||+++|+|++..+++.+|+++|+|| .+ ||++.+.|+++| +++++++.|.||||+||.++
T Consensus 140 ~~is~-a~~Ad~~~v~a~~~~~g~~~~~~~flV~-------~~--gv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~ 206 (394)
T 2rfq_A 140 AWSSG-CDHASWAVLGGPVIKDGRPVDFVSFLIP-------RE--DYRIDDVWNVVG---LRGTGSNTVVVEDVFVPTHR 206 (394)
T ss_dssp EEETT-GGGCSEEEEEEEEEETTEEEEEEEEEEE-------GG--GCEEECCCCBSS---CGGGCCEEEEEEEEEEEGGG
T ss_pred eccCC-CcccceEEEeeeecCCCCCCceeEEEEE-------hh--hcEEeCCccccc---cccCCCCceEEcceEcChHH
Confidence 99999 8999999999998544434589999999 33 899999999999 99999999999999999999
Q ss_pred cccccccccC--CCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc---ccCCCCCCCcccccchH
Q 007504 254 MLMRVSQVTR--EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR---QFGSKNGGPETQVIDYK 328 (601)
Q Consensus 254 lL~~~~~v~~--~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~---qfg~~~~~~e~~i~~~q 328 (601)
+|+....... .|...... .. .....+...|+.+++.++|+++++++.+++|+++|+ |||+ ||++||
T Consensus 207 ~lg~~~~~~g~~~g~~~~~g-~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~-------~i~~~q 277 (394)
T 2rfq_A 207 VLSFKAMSNLTAPGLERNTA-PV-YKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGE-------KAKDDP 277 (394)
T ss_dssp EEEHHHHHTTCCGGGTTCCC-GG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC-------GGGSCH
T ss_pred hcccccccccCCCCcccCCC-cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCc-------ccccCH
Confidence 9974210000 11000000 00 223446678999999999999999999999999999 9999 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007504 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (601)
Q Consensus 329 ~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 408 (601)
.+|++|++|.+.+++++.+++++++.++.... .+.. ...+....++++|.++++.+.++++.|+|+|||+||++++
T Consensus 278 ~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~---~g~~-~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 353 (394)
T 2rfq_A 278 FAKVRIAEASSDIDAAWRQLSGNVADEYALLV---AGEE-VPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGT 353 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCC
Confidence 99999999999999999999999988764321 1221 1124566789999999999999999999999999999999
Q ss_pred ChhhhccccccccccCc-chHHHHHHHHHHHHH
Q 007504 409 GLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 440 (601)
Q Consensus 409 ~l~~~~rd~~~~~~~~G-~~~vl~~~ia~~ll~ 440 (601)
+++++|||++...+++| ++++++..+++.+|+
T Consensus 354 ~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg 386 (394)
T 2rfq_A 354 PLQRFWRDAHAGRVHAANDPERAYVMYGTGEFG 386 (394)
T ss_dssp HHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcccccCchhHHHHHHHHHhC
Confidence 99999999999999999 999999999999875
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1e-44 Score=397.71 Aligned_cols=324 Identities=18% Similarity=0.173 Sum_probs=272.5
Q ss_pred HHHHHHHHHccC-------CHHHHHHHhhh----------cCCchhhHhhhhchHHHHccCCCHHHHHhhHHHHhcccc-
Q 007504 70 AYAWKRIIELRL-------SEEEASMLRSS----------VDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI- 131 (601)
Q Consensus 70 ~~~~~~~~~~g~-------~~~~gg~~~~~----------~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~- 131 (601)
.++++.+.+.|| |+++|+..... .....|+.++. .++++|..+| ++|+++|+|++.+|++
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge~~ 166 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDRYD 166 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSCCC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCCcc
Confidence 346667777776 24556553322 12244555554 4677888889 9999999999999998
Q ss_pred ------------eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEccCCCCC
Q 007504 132 ------------IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDH 199 (601)
Q Consensus 132 ------------~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A~~~~~~~~~ 199 (601)
++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+| +..||+++|+|++. .
T Consensus 167 p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~-~g~y~Ln-----G~K~f~S--a~~Ad~~lVlArt~-----~ 233 (541)
T 3djl_A 167 SHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLE-DGSYRLV-----GHKWFFS--VPQSDAHLVLAQTA-----G 233 (541)
T ss_dssp CCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEEE-----EEEEEEE--CTTSSEEEEEEEET-----T
T ss_pred cccccccccccceeEEEeccCCcCCCcccceeEEEEcC-CCeEEEE-----EEEEeec--ccccCEEEEEEEEC-----C
Confidence 88999999999999999999999874 4789999 9999998 57999999999973 5
Q ss_pred ceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCccccccccccCCCceeccCcchhhHHh
Q 007504 200 GVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 279 (601)
Q Consensus 200 G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~ 279 (601)
|+++|+||.+.++ ...+||+|.++|+++| ++++++++|.|+||+ ++++|. .|.++. .+..
T Consensus 234 Gis~flVp~~~p~--~~~~Gv~i~~~~~~~G---~rgt~s~~v~fddv~---~~llG~------~g~G~~------~~~~ 293 (541)
T 3djl_A 234 GLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASCEVEFQDAI---GWLLGL------EGEGIR------LILK 293 (541)
T ss_dssp EEEEEEEESBCTT--SCBCSEEEEEECCCSS---CTTSCEEEEEEEEEE---EEEESS------TTCHHH------HTHH
T ss_pred ceEEEEEecCCCC--CCcCCeEEeeccccCC---CcCCceeEEEEccce---eeeeec------CCchHH------HHHH
Confidence 8999999944322 1234999999999999 999999999999995 788874 555554 5567
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007504 280 TMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT 359 (601)
Q Consensus 280 ~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~ 359 (601)
.+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||.+|++|+++.+.+++++.+++++++.++..
T Consensus 294 ~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~- 365 (541)
T 3djl_A 294 MGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGN-------PLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRR- 365 (541)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 788999999999999999999999999999999999 999999999999999999999999999998877631
Q ss_pred HHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 360 QRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
.+.......+..++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..++|.++
T Consensus 366 -----~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~ 440 (541)
T 3djl_A 366 -----ADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLN 440 (541)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred -----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHH
Confidence 010001225667899999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 007504 440 KT 441 (601)
Q Consensus 440 ~~ 441 (601)
+.
T Consensus 441 ~~ 442 (541)
T 3djl_A 441 KQ 442 (541)
T ss_dssp HC
T ss_pred hC
Confidence 53
No 37
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=3.9e-45 Score=392.69 Aligned_cols=352 Identities=13% Similarity=0.026 Sum_probs=278.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHhhhcC------------C
Q 007504 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------------E 95 (601)
Q Consensus 33 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~gg~~~~~~~------------~ 95 (601)
++++.+++|+.. +... ....+........+|+.+.+.|| |+++||.+.++.. .
T Consensus 39 ~l~~~~r~~~~~---~~~~-------a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~ 108 (422)
T 2jbr_A 39 SMLEKIQQILPQ---IAKN-------AESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACA 108 (422)
T ss_dssp CHHHHHHHHHHH---HHHT-------HHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH---HHHh-------hHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCc
Confidence 477888888752 1110 01112222234568999999887 6788876543321 1
Q ss_pred chhh--HhhhhchHHHHccCCCHHHHHhhHHHHhcccceeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCcee
Q 007504 96 PAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173 (601)
Q Consensus 96 ~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K 173 (601)
+.++ ..| .+++..|..+|+++||++|+|. |+.++|+++| | +|+|+++ +|+|+|| |+|
T Consensus 109 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~--~~g~~ln-----G~K 167 (422)
T 2jbr_A 109 GTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEV--EGGIILN-----GDY 167 (422)
T ss_dssp HHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEE--TTEEEEE-----EEE
T ss_pred CHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEe--CCEEEEe-----eeE
Confidence 2232 233 4677789999999999999996 8999999988 3 5899998 7899999 999
Q ss_pred eccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCCCCCccceEEEecccccCcCc
Q 007504 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 253 (601)
Q Consensus 174 ~~v~~~~~~Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~ 253 (601)
+|+|| +..||+++|+|++..+++..|+++|+|| .+ ||++.+.|+++| +++++++.|.||||+||.++
T Consensus 168 ~~is~-a~~Ad~~~v~a~~~~~~g~~g~~~flV~-------~~--gv~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~ 234 (422)
T 2jbr_A 168 GWSSG-CDHAEYAIVGFNRFDADGNKIYSFGVIP-------RS--DYEIVDNWYAQA---IKSSGSKMLKLVNVFIPEYR 234 (422)
T ss_dssp EEETT-GGGCSEEEEEEEEECTTSCEEEEEEEEE-------GG--GCEEECCCCBSS---SGGGCCEEEEEEEEEEEGGG
T ss_pred eeecC-CccccEEEEEEEecCCCCCceeEEEEEE-------cC--ceEEeCCccccC---cCCCCCCcEEEeeEEecHHH
Confidence 99999 8999999999998654345689999999 33 899999999999 99999999999999999999
Q ss_pred ccccccccc--CCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCcccccchHH
Q 007504 254 MLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR--QFGSKNGGPETQVIDYKT 329 (601)
Q Consensus 254 lL~~~~~v~--~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~--qfg~~~~~~e~~i~~~q~ 329 (601)
+|+....+. ..|.+....... .....+...|+.+++.++|+++++++.+++|+++|+ |||+ ||++||.
T Consensus 235 ~lg~~~~~~g~~~g~g~~~~~~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~-------~i~~~q~ 306 (422)
T 2jbr_A 235 ISKAKDMMEGKSAGFGLYPDSKI-FYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGA-------NVGLATP 306 (422)
T ss_dssp EEEHHHHHHTCSTTTTSCTTCSS-SSSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCC-------BCTTCHH
T ss_pred eecccccccCCCCcccccCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------ccccCHH
Confidence 998521110 013220000000 233456778999999999999999999999999998 9999 9999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007504 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (601)
Q Consensus 330 ~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 409 (601)
+|++|++|.+.+++++++++++++.+++... .+.. ...+....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 307 vq~~la~~~~~~~aar~~~~~aa~~~d~~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~ 382 (422)
T 2jbr_A 307 ALMRIAESTHQVAAARALLEKTWEDHRIHGL---NHQY-PNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSE 382 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCc
Confidence 9999999999999999999999988764321 1221 11235567899999999999999999999999999999999
Q ss_pred hhhhccccccccccCcch-HHHHHHHHHHHHH
Q 007504 410 LPELFAVYVPACTYEGDN-IVLLLQVARFLMK 440 (601)
Q Consensus 410 l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~ 440 (601)
++++|||++...+++|++ ++++..+++.+|+
T Consensus 383 l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg 414 (422)
T 2jbr_A 383 LQRLFRDAHMTGAHAYTDYDVCAQILGRELMG 414 (422)
T ss_dssp HHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHHhC
Confidence 999999999999999999 9999999999875
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=1.2e-33 Score=306.06 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=214.1
Q ss_pred CHHHHHhhHHHHhcccceeEEeccCCCCC--------CCCCCCceEEE-EeCCCCeEEEecCCCCceeeccCCCCCCCcE
Q 007504 115 TDEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNVQGLETTAT-FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTH 185 (601)
Q Consensus 115 t~eq~~~~l~~l~~g~~~~~~a~tE~~~G--------sd~~~~~TtA~-~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~ 185 (601)
.+|||++|||++.+|++++|+|+|||+.| ||+. +.|+++ ++ +|+|||| |.|+|+|| ..||+
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~--gdg~Vln-----G~K~~iT~--~~Ad~ 191 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQT--EKGIVVR-----GARMTATF--PLADE 191 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEEC--SSEEEEE-----EEEEEEEC--CCSSE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEE--CCEEEEE-----eEEEEecc--ccccE
Confidence 47999999999999999999999999876 6765 777775 45 8999999 99999998 78999
Q ss_pred EEEEEEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEe--eCCCc--------CCCCCCCC-ccceEEEecccccCcCc
Q 007504 186 AVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG--DIGMK--------FGNGAYNT-MDNGVLRFEHVRIPRNQ 253 (601)
Q Consensus 186 ~lV~A~~~~~-~~~~G~~~flV~~r~~~~~~~~pGv~i~--~~~~~--------~G~~~~~~-~~~~~v~fd~v~VP~~~ 253 (601)
++|+|++..+ +...++++|+|| .+.|||++. +.+.+ +| .+. .+++.|.||||+||.++
T Consensus 192 ~iV~art~~~~~~~~~~s~flVp-------~dtpGv~v~~r~~~~~~~s~~d~~lg---~r~~~~~~~v~FddV~VP~e~ 261 (481)
T 2yyk_A 192 VLIFPSILLQAGSEKYALAFALP-------TSTPGLHFVCREALVGGDSPFDHPLS---SRVEEMDCLVIFDDVLVPWER 261 (481)
T ss_dssp EEECCCSCCCTTCGGGCEEEEEE-------TTCTTEEEEECCCCCCCSCTTTCTTT---TTCCCCEEEEEEEEEEEEGGG
T ss_pred EEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEeccccccCCcccccccc---ccCCCCeEEEEEccEEECHHH
Confidence 9999998532 233468999999 889999995 33322 34 453 67789999999999999
Q ss_pred cccccccccCCCceeccCcchhhH--HhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHH
Q 007504 254 MLMRVSQVTREGKYVQSNVPRQLL--YGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (601)
Q Consensus 254 lL~~~~~v~~~g~~~~~~~~~~~~--~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q 331 (601)
+|+- + +.|.... .. ...+..+|+..++.++|.++.++.++.+|+.. | +|.+||.+|
T Consensus 262 vl~~-G---~~~~g~~------~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~---------gi~~~q~vq 319 (481)
T 2yyk_A 262 VFIL-G---NVELCNN------AYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---I---------GADVYGHVQ 319 (481)
T ss_dssp EEEE-S---CHHHHHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T---------TGGGSHHHH
T ss_pred ccCC-C---CccHHHH------HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---c---------ChhhhHHHH
Confidence 9831 0 1222111 11 35567889999999999999999999988864 2 588999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChh
Q 007504 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411 (601)
Q Consensus 332 ~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~ 411 (601)
++|++|.+.+++++++++++++..+. .+..........++++|.++++.+.++++.|+|+|||.|++ .|++
T Consensus 320 ~~laem~~~leaar~l~~~aa~~~d~-------~~~G~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e 390 (481)
T 2yyk_A 320 EKIAEIIVYLEAMRAFWTRAEEEAKE-------NAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSE 390 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEE-------CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc-------cccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccH
Confidence 99999999999999999999775421 01111012245689999999999999999999999998888 8888
Q ss_pred hhcccccccc------ccCcchHHHHHHHHHHH
Q 007504 412 ELFAVYVPAC------TYEGDNIVLLLQVARFL 438 (601)
Q Consensus 412 ~~~rd~~~~~------~~~G~~~vl~~~ia~~l 438 (601)
++| +.+... ...|.+++++.+++|.+
T Consensus 391 ~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 391 KDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 888 774322 33599999999999855
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.1e-33 Score=306.70 Aligned_cols=275 Identities=12% Similarity=0.001 Sum_probs=208.8
Q ss_pred HHccCCC--HHHHHhhHHHHhcccceeEEeccCCCCC--------CCC-CCCceEEEEeCCCCeEEEecCCCCceeeccC
Q 007504 109 AIKGQGT--DEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNV-QGLETTATFDPQTDEFVIHSPTLTSSKWWPG 177 (601)
Q Consensus 109 ~i~~~Gt--~eq~~~~l~~l~~g~~~~~~a~tE~~~G--------sd~-~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~ 177 (601)
.+..+|| +|||++|||++++|++++|+|+|||+.| ||+ ..+. +|+++ +|+|||| |+|+|+|
T Consensus 119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~--gdg~vln-----G~K~~iT 190 (490)
T 1u8v_A 119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKR--EDGIVVR-----GAKAHQT 190 (490)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEEC--SSEEEEE-----EEECSCT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEE--CCEEEEE-----eEEEEee
Confidence 3458999 9999999999999999999999999874 775 3444 78877 8999999 9999999
Q ss_pred CCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEe---eCCCc----------CCCCCC-CC-ccceE
Q 007504 178 GLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG---DIGMK----------FGNGAY-NT-MDNGV 241 (601)
Q Consensus 178 ~~~~~Ad~~lV~A~~~~~-~~~~G~~~flV~~r~~~~~~~~pGv~i~---~~~~~----------~G~~~~-~~-~~~~~ 241 (601)
| +..||+++|+|++..+ +...++++|+|| .+.|||++. +.+.+ +| . +. .+++.
T Consensus 191 ~-a~~Ad~~iV~art~~~~~~~~~~s~flVp-------~d~pGv~v~~~r~~~~~~~~~~~~d~~lg---~~r~~~~~~~ 259 (490)
T 1u8v_A 191 G-SINSHEHIIMPTIAMTEADKDYAVSFACP-------SDADGLFMIYGRQSCDTRKMEEGADIDLG---NKQFGGQEAL 259 (490)
T ss_dssp T-CTTCSEEEECCSSCCCGGGGGGCEEEEEE-------TTCTTEEEEECCCTTGGGGGSTTCCGGGS---SSSCCCCCEE
T ss_pred C-CcccCEEEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEecccccccccccccccCCcc---ccccCCceEE
Confidence 9 8999999999997532 223458899999 889999995 34443 55 4 42 56789
Q ss_pred EEecccccCcCccccccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCc
Q 007504 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (601)
Q Consensus 242 v~fd~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e 321 (601)
|.||||+||.+++|+. + ..|..+. .....+...|+.+++.++|.+..++.++..... .|
T Consensus 260 v~FddV~VP~e~vl~~-g---~~~~g~~------~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~---~~-------- 318 (490)
T 1u8v_A 260 VVFDNVFIPNDRIFLC-Q---EYDFAGM------MVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD---YN-------- 318 (490)
T ss_dssp EEEEEEEEEGGGEEEE-S---CGGGHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--------
T ss_pred EEECceEeCHHHccCC-C---ChhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--------
Confidence 9999999999999831 0 1232222 233444567766666666666666555544332 12
Q ss_pred ccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007504 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (601)
Q Consensus 322 ~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG 401 (601)
+|.++|.+|++|++|.+.+++++++++++++..+. .+..........++++|.++++.+.++++.|+|+|||
T Consensus 319 -gi~~~q~vq~~laem~~~leaar~l~~~aa~~~d~-------~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg 390 (490)
T 1u8v_A 319 -GAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYP-------TAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGG 390 (490)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-------CTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCT
T ss_pred -CchhcHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------cccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 47899999999999999999999999998775421 0111101224568899999999999999999999999
Q ss_pred ccccccCChhhhcccc-ccccccCcchHHHHHH
Q 007504 402 HGYLCSSGLPELFAVY-VPACTYEGDNIVLLLQ 433 (601)
Q Consensus 402 ~G~~~~~~l~~~~rd~-~~~~~~~G~~~vl~~~ 433 (601)
.||+ +|++++|||. +++.++|.....++..
T Consensus 391 ~g~~--~p~er~~rd~~~~~~~~~~~~~~l~~~ 421 (490)
T 1u8v_A 391 LMVT--MPSEADFKSETVVGRDGETIGDFCNKF 421 (490)
T ss_dssp HHHH--CCCHHHHTCCCBCSTTSCBHHHHHHHH
T ss_pred chhc--ChHHHHHhCchhccccchhHHHHHHHH
Confidence 9998 8999999998 8888888766555543
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.97 E-value=5.5e-29 Score=269.07 Aligned_cols=281 Identities=12% Similarity=-0.002 Sum_probs=189.1
Q ss_pred CCC--HHHHHhhHHHHhcccceeEEeccCCCC--------CCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCC
Q 007504 113 QGT--DEQHQKWLPLAYKMEIIGCYAQTELGH--------GSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV 182 (601)
Q Consensus 113 ~Gt--~eq~~~~l~~l~~g~~~~~~a~tE~~~--------Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~~~~ 182 (601)
+|+ .+|+++|||++++|++++|+|+|||+. |||+ .+.|++ .+ +|+|||| |.|+|++| +..
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~~-~~--gdg~Vln-----G~K~~iT~-a~~ 196 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIVE-KT--DDGIIVN-----GVKAVGTG-IAF 196 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEEE-EC--SSEEEEE-----EEEEEEES-GGG
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEEE-EE--CCEEEEE-----EEEEEECC-ccc
Confidence 554 468899999999999999999999986 5787 555543 34 7899999 99999999 899
Q ss_pred CcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCC--CC-----CccceEEEecccccCcCccc
Q 007504 183 STHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA--YN-----TMDNGVLRFEHVRIPRNQML 255 (601)
Q Consensus 183 Ad~~lV~A~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~--~~-----~~~~~~v~fd~v~VP~~~lL 255 (601)
||+++|+|++..+...+++++|+|| .+.|||++...+.++|... .+ +..++.|.||||+||.+++|
T Consensus 197 Ad~~lV~a~t~~~~~~~~~s~FlVp-------~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl 269 (515)
T 3hwc_A 197 GDYMHIGCLYRPGIPGEQVIFAAIP-------TNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVF 269 (515)
T ss_dssp CSEEEECCCCCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEE
T ss_pred cCEEEEEEEecCCCCCCeEEEEEEE-------CCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHcc
Confidence 9999999987332222238999999 8899999987776665100 11 23478999999999999999
Q ss_pred cccccccCCCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHH
Q 007504 256 MRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 335 (601)
Q Consensus 256 ~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la 335 (601)
+. + +.|.++. .+...+...+....+..++.+..++..+..++. +| +|++||.+|++|+
T Consensus 270 ~~-G---e~g~g~~------~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~---------gI~~fQ~Vq~kLA 327 (515)
T 3hwc_A 270 HI-G---NPEHAKL------YPQRIFDWVHYHILIRQVLRAELIVGLAILITE---HI---------GTSKLPTVSARVA 327 (515)
T ss_dssp EE-S---CTTGGGT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---------TCTTSHHHHHHHH
T ss_pred CC-C---CccHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc---------CCcccHHHHHHHH
Confidence 31 0 1333322 221122222111112334444444444444432 23 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC------
Q 007504 336 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG------ 409 (601)
Q Consensus 336 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~------ 409 (601)
+|.+.+++++++++++++..+ ..+..........++++|.++++.+.++++.|+|+|||.+++..+.
T Consensus 328 em~~~lEaaR~l~~~Aa~~~d-------~~~~G~~~p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~Ps~~d~~~p 400 (515)
T 3hwc_A 328 KLVAFHLAMQAHLIASEETGF-------HTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIPSEGQWDDS 400 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTCE-------ECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCCCHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCHHHhcCc
Confidence 999999999999998876432 1111111123456899999999999999999999999999986433
Q ss_pred -hhhhccccccccccCcchHHHHHHHHHHHH
Q 007504 410 -LPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (601)
Q Consensus 410 -l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 439 (601)
+..++..............+-..+++..+.
T Consensus 401 e~~~~l~ky~~g~~~~a~~R~kl~rl~~d~~ 431 (515)
T 3hwc_A 401 QSGQWFVKLNNGPKGNPRERVQIGRVIRDLY 431 (515)
T ss_dssp TTHHHHHHHTCCTTCCTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 222333222222234444455555555553
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.89 E-value=1.6e-21 Score=211.19 Aligned_cols=253 Identities=11% Similarity=-0.013 Sum_probs=180.1
Q ss_pred HHHHhhHHHHhcccceeEEeccCCCCCCCC-----CCCceE-EEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEE
Q 007504 117 EQHQKWLPLAYKMEIIGCYAQTELGHGSNV-----QGLETT-ATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYA 190 (601)
Q Consensus 117 eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~-----~~~~Tt-A~~d~~~~~~vLntp~~~G~K~~v~~~~~~Ad~~lV~A 190 (601)
+...+|+..+.+.++..+.++|.|-..-.. ...-.. .+++ ++||||| |.|.|+|| +..||+++|++
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~--~dGiVVn-----GaK~~~T~-a~~Ad~i~V~a 205 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKN--DKGIVVS-----GVKAIGTG-VAFADWIHIGV 205 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEEC--SSEEEEE-----EEEEEEES-GGGCSEEEECC
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEc--CCeEEEe-----eEehhhcC-ccccCEEEEEe
Confidence 445789999999999999999999532111 111122 2333 6899999 99999999 89999999999
Q ss_pred EEccCCCCCceEEEEEeeccCCCCCCCCCeEEeeCCCcCCCCC------CCCc-cceEEEecccccCcCccccccccccC
Q 007504 191 RLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA------YNTM-DNGVLRFEHVRIPRNQMLMRVSQVTR 263 (601)
Q Consensus 191 ~~~~~~~~~G~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~------~~~~-~~~~v~fd~v~VP~~~lL~~~~~v~~ 263 (601)
++....+.++...|+|| .+.|||++.......+.+. .++. ..+.|.||||+||.++++.- + +
T Consensus 206 ~t~~~~~~d~~~~F~VP-------~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~-G---e 274 (517)
T 4g5e_A 206 FFRPGIPGDQIIFAATP-------VNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHL-G---N 274 (517)
T ss_dssp CCCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEE-S---C
T ss_pred ecCCCCCccceEEEEEe-------cCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHcccc-C---C
Confidence 98766556778899999 8999999865444433100 1111 23789999999999998731 0 1
Q ss_pred CCceeccCcchhhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHH
Q 007504 264 EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYA 343 (601)
Q Consensus 264 ~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a 343 (601)
.+.... .....+...|...++..++.+..++..+..++.. +| |.+||.+|++|++|.+.+++
T Consensus 275 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae~---~G---------i~~fq~Vq~kLaEm~~~~E~ 336 (517)
T 4g5e_A 275 PEHAKL------YPQRVFDWLHYHALIRQSVRAELMAGLAILITEH---IG---------TNKIPAVQTRVAKLIGFHQA 336 (517)
T ss_dssp TTHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT---------CTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC---------CcccHHHHHHHHHHHHHHHH
Confidence 222221 3344566677777777888888888888888753 33 67899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC-hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccc
Q 007504 344 FRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAV 416 (601)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd 416 (601)
++++++.+.... ...+... .++ ...++++|.++++.+.+++.+++|++||.|++. |-+..+++
T Consensus 337 ~ral~~aaa~~a-------~~~~~G~~~P~-~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~--Pse~d~~~ 400 (517)
T 4g5e_A 337 MLAHIVASEELG-------FHTPGGAYKPN-ILIYDFGRALYLENFSQMIYELVDLSGRSALIF--ASEDQWND 400 (517)
T ss_dssp HHHHHHHHHHTC-------EECTTCCEECC-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC--CCHHHHHC
T ss_pred HHHHHHHHHHhc-------ccCCCCCcCcC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--CCHHHhcC
Confidence 998887653311 1111111 122 345788999999999999999999999999984 43444444
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=87.94 E-value=3.4 Score=45.29 Aligned_cols=122 Identities=8% Similarity=-0.024 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 007504 298 RAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACT 377 (601)
Q Consensus 298 ~al~~a~~Ya~~R~qfg~~~~~~e~~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (601)
..+..++.++.+|. |. .|.+-|.+..+|+++.+.+|++.+.+.++...+... + .+......
T Consensus 469 ~~~~~~~~~~~~~~--~~-------~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~------~----~~~~~~~~ 529 (597)
T 3owa_A 469 KIGLMVAGLAAQKY--GK-------ALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTT------G----LEKNKQKV 529 (597)
T ss_dssp HHHHHHHHHHHHHH--GG-------GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C----SGGGHHHH
T ss_pred HHHHHHHHHHHHHh--CC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------C----ccchHHHH
Confidence 33445556655553 45 688899999999999999999999988886655320 1 12334456
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccccCcch-HHHHHHHHHHHHH
Q 007504 378 AGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 440 (601)
Q Consensus 378 ~~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~ 440 (601)
.++++||.+...++-..+.++. ..+...-.+..++...+-+.-+...| ..++.+||+.++.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 591 (597)
T 3owa_A 530 LYTEVFCQEAFNEIEAHAKETL--IAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILE 591 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 7899999999999999888887 33333322333333333333333323 4445556655553
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=51.03 E-value=1.1e+02 Score=33.10 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=59.3
Q ss_pred cccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007504 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (601)
Q Consensus 323 ~i~~~q~~q~~la~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~t~~a~~~~~~~~q~~GG~ 402 (601)
.+..-|.+..||++++..+|++..+..++.+.+.. +. +.......+++.|+.+...++-..+.++..+.
T Consensus 509 ~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~-------g~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 577 (607)
T 2uxw_A 509 GIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSE-------GH----PTAQHEKMLCDTWCIEAAARIREGMAALQSDP 577 (607)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67788999999999999999988887777554421 11 12222356788898888888877777744330
Q ss_pred cccccCChhhhccccccccccCcchHHHHHHHHHHHHHH
Q 007504 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (601)
Q Consensus 403 G~~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 441 (601)
. ..+++..+.+||+.++..
T Consensus 578 ~--------------------~~~~~~~~~~ia~~~~~~ 596 (607)
T 2uxw_A 578 W--------------------QQELYRNFKSISKALVER 596 (607)
T ss_dssp T--------------------HHHHHHHHHHHHHHHHHH
T ss_pred C--------------------CCChHHHHHHHHHHHHHc
Confidence 0 024456677777777654
Done!