Query 007505
Match_columns 601
No_of_seqs 218 out of 1796
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 03:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 1.9E-66 6.5E-71 571.6 35.6 486 14-601 2-503 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 1.6E-55 5.5E-60 481.7 32.8 435 14-601 2-446 (551)
3 2vl7_A XPD; helicase, unknown 100.0 9.5E-50 3.2E-54 434.3 30.5 425 12-601 4-437 (540)
4 1qde_A EIF4A, translation init 99.5 5.8E-14 2E-18 134.7 10.4 75 12-91 32-106 (224)
5 3fe2_A Probable ATP-dependent 99.5 1.8E-13 6.1E-18 133.1 12.3 76 12-92 47-127 (242)
6 1vec_A ATP-dependent RNA helic 99.5 9.7E-14 3.3E-18 131.3 10.2 75 12-91 21-95 (206)
7 3iuy_A Probable ATP-dependent 99.5 1.2E-13 4.2E-18 132.9 10.8 74 12-90 38-117 (228)
8 3ber_A Probable ATP-dependent 99.5 1.8E-13 6.1E-18 133.6 12.0 76 11-91 60-135 (249)
9 3dkp_A Probable ATP-dependent 99.5 7.3E-14 2.5E-18 136.0 8.2 75 12-91 47-122 (245)
10 2oxc_A Probable ATP-dependent 99.4 1.6E-13 5.4E-18 132.3 9.2 75 12-91 42-116 (230)
11 1q0u_A Bstdead; DEAD protein, 99.4 1.3E-13 4.5E-18 131.8 8.2 76 12-92 22-97 (219)
12 1wrb_A DJVLGB; RNA helicase, D 99.4 3.7E-13 1.3E-17 131.7 11.6 75 12-91 41-124 (253)
13 1t6n_A Probable ATP-dependent 99.4 3.4E-13 1.2E-17 129.0 10.6 75 12-91 32-106 (220)
14 2pl3_A Probable ATP-dependent 99.4 3.7E-13 1.3E-17 130.3 10.7 74 12-90 43-120 (236)
15 2gxq_A Heat resistant RNA depe 99.4 6.2E-13 2.1E-17 125.7 11.2 74 12-90 19-95 (207)
16 3bor_A Human initiation factor 99.4 6.4E-13 2.2E-17 128.6 9.6 75 12-91 48-122 (237)
17 3ly5_A ATP-dependent RNA helic 99.4 1.8E-12 6.1E-17 127.5 12.1 75 12-91 72-150 (262)
18 1fuu_A Yeast initiation factor 99.3 1.4E-12 4.8E-17 136.1 9.3 75 12-91 39-113 (394)
19 1s2m_A Putative ATP-dependent 99.3 5.5E-12 1.9E-16 132.0 12.4 75 12-91 39-113 (400)
20 2db3_A ATP-dependent RNA helic 99.3 4.2E-12 1.4E-16 134.4 11.5 75 12-91 74-153 (434)
21 3pey_A ATP-dependent RNA helic 99.3 3.5E-12 1.2E-16 133.0 10.6 76 12-90 23-98 (395)
22 2z0m_A 337AA long hypothetical 99.3 6.2E-12 2.1E-16 128.1 11.9 70 11-91 11-80 (337)
23 2i4i_A ATP-dependent RNA helic 99.3 6.8E-12 2.3E-16 132.0 12.3 75 12-91 33-125 (417)
24 1xti_A Probable ATP-dependent 99.3 2.9E-12 1E-16 133.5 9.0 76 12-92 26-101 (391)
25 1hv8_A Putative ATP-dependent 99.3 3.3E-12 1.1E-16 131.7 9.2 75 12-91 24-98 (367)
26 3fmo_B ATP-dependent RNA helic 99.3 3.5E-12 1.2E-16 127.9 8.4 75 12-91 110-186 (300)
27 2j0s_A ATP-dependent RNA helic 99.3 5.8E-12 2E-16 132.3 9.6 75 12-91 55-129 (410)
28 3eiq_A Eukaryotic initiation f 99.3 8E-12 2.7E-16 131.3 10.2 76 11-91 57-132 (414)
29 3b6e_A Interferon-induced heli 99.3 1.6E-11 5.6E-16 116.6 10.8 73 12-90 30-106 (216)
30 3sqw_A ATP-dependent RNA helic 99.2 1E-11 3.5E-16 136.5 9.9 78 11-91 38-119 (579)
31 3fht_A ATP-dependent RNA helic 99.2 1.3E-11 4.3E-16 129.6 8.7 77 12-91 43-119 (412)
32 3i5x_A ATP-dependent RNA helic 99.2 1.7E-11 5.8E-16 134.4 10.0 78 11-91 89-170 (563)
33 3tbk_A RIG-I helicase domain; 99.2 3.4E-11 1.2E-15 131.4 12.1 73 13-91 2-76 (555)
34 3oiy_A Reverse gyrase helicase 99.2 4.3E-11 1.5E-15 125.9 10.8 71 11-90 17-87 (414)
35 4a2p_A RIG-I, retinoic acid in 99.2 5.1E-11 1.7E-15 130.2 11.4 74 12-91 4-79 (556)
36 2ykg_A Probable ATP-dependent 99.2 7.1E-11 2.4E-15 132.9 12.6 76 11-91 8-85 (696)
37 1gm5_A RECG; helicase, replica 99.2 1.4E-10 4.9E-15 129.7 13.4 76 11-91 364-441 (780)
38 4a2q_A RIG-I, retinoic acid in 99.1 1.1E-10 3.8E-15 132.9 11.5 75 12-91 244-320 (797)
39 3fmp_B ATP-dependent RNA helic 99.1 3.3E-11 1.1E-15 129.3 6.8 77 12-91 110-186 (479)
40 2v1x_A ATP-dependent DNA helic 99.1 1.9E-10 6.5E-15 125.8 12.2 69 11-90 39-107 (591)
41 1oyw_A RECQ helicase, ATP-depe 99.1 1.5E-10 5.2E-15 125.1 10.6 69 10-89 19-87 (523)
42 1wp9_A ATP-dependent RNA helic 99.1 1.6E-10 5.4E-15 123.7 9.0 68 14-90 8-75 (494)
43 4a2w_A RIG-I, retinoic acid in 99.1 1.9E-10 6.4E-15 132.8 10.0 73 14-91 246-320 (936)
44 3fho_A ATP-dependent RNA helic 99.1 4.2E-11 1.4E-15 129.3 3.6 76 12-90 137-212 (508)
45 4gl2_A Interferon-induced heli 99.1 1.1E-10 3.7E-15 131.4 6.7 73 13-91 5-81 (699)
46 2eyq_A TRCF, transcription-rep 99.0 8.4E-10 2.9E-14 129.4 13.7 76 10-90 598-675 (1151)
47 1rif_A DAR protein, DNA helica 99.0 1.1E-09 3.7E-14 108.7 11.0 68 16-90 113-180 (282)
48 2fz4_A DNA repair protein RAD2 99.0 1.6E-09 5.6E-14 104.4 10.4 67 11-89 89-155 (237)
49 2xgj_A ATP-dependent RNA helic 99.0 1.7E-09 5.7E-14 125.0 11.2 73 9-90 80-152 (1010)
50 4a4z_A Antiviral helicase SKI2 99.0 1.5E-09 5.2E-14 125.3 10.9 74 8-90 32-105 (997)
51 2oca_A DAR protein, ATP-depend 98.9 1.7E-09 5.7E-14 117.0 10.2 70 13-90 111-180 (510)
52 2zj8_A DNA helicase, putative 98.9 1.1E-09 3.8E-14 123.3 8.6 73 12-90 19-91 (720)
53 4ddu_A Reverse gyrase; topoiso 98.9 2.9E-09 9.8E-14 124.1 11.9 71 11-90 74-144 (1104)
54 3l9o_A ATP-dependent RNA helic 98.9 2.1E-09 7.3E-14 125.2 10.7 75 7-90 176-250 (1108)
55 2fwr_A DNA repair protein RAD2 98.9 2E-09 7E-14 115.0 9.0 68 10-89 88-155 (472)
56 2va8_A SSO2462, SKI2-type heli 98.9 2.7E-09 9.2E-14 120.2 10.1 73 12-90 26-98 (715)
57 2p6r_A Afuhel308 helicase; pro 98.9 2.3E-09 7.8E-14 120.5 7.8 71 12-90 21-91 (702)
58 1gku_B Reverse gyrase, TOP-RG; 98.8 3.3E-09 1.1E-13 123.5 8.7 71 11-91 53-123 (1054)
59 3h1t_A Type I site-specific re 98.8 8.4E-09 2.9E-13 113.5 10.9 68 16-84 178-252 (590)
60 4f92_B U5 small nuclear ribonu 98.8 1.2E-08 4E-13 123.5 10.8 75 12-90 74-157 (1724)
61 1z63_A Helicase of the SNF2/RA 98.7 4.5E-08 1.6E-12 105.4 12.8 72 16-90 37-108 (500)
62 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 4.1E-08 1.4E-12 112.9 11.4 72 17-90 272-353 (1038)
63 4f92_B U5 small nuclear ribonu 98.7 4.3E-08 1.5E-12 118.6 10.8 71 14-89 924-994 (1724)
64 1tf5_A Preprotein translocase 98.6 1.7E-07 6E-12 103.4 10.7 71 12-93 80-150 (844)
65 3dmq_A RNA polymerase-associat 98.5 1.1E-07 3.6E-12 110.1 8.2 72 13-90 151-222 (968)
66 2fsf_A Preprotein translocase 98.5 1.5E-07 5E-12 103.8 8.8 67 17-93 75-141 (853)
67 3mwy_W Chromo domain-containin 98.5 2.1E-07 7.3E-12 105.7 10.1 73 16-90 236-308 (800)
68 2ipc_A Preprotein translocase 98.5 2.9E-07 9.9E-12 101.4 9.9 70 12-92 76-145 (997)
69 1nkt_A Preprotein translocase 98.4 3.5E-07 1.2E-11 101.0 9.5 71 12-93 108-178 (922)
70 1z3i_X Similar to RAD54-like; 98.4 1.5E-06 5.1E-11 96.2 11.9 74 16-91 55-137 (644)
71 4b3f_X DNA-binding protein smu 98.1 1.6E-05 5.4E-10 88.1 13.7 67 16-89 189-255 (646)
72 2z83_A Helicase/nucleoside tri 97.9 2.7E-06 9.2E-11 90.2 2.9 57 29-88 15-71 (459)
73 2jlq_A Serine protease subunit 97.9 2.7E-06 9.2E-11 90.0 1.0 68 14-88 2-69 (451)
74 1yks_A Genome polyprotein [con 97.8 5.2E-06 1.8E-10 87.5 3.0 56 31-89 4-59 (440)
75 2wv9_A Flavivirin protease NS2 97.8 1.5E-06 5.2E-11 95.9 -1.7 71 16-89 215-292 (673)
76 2gk6_A Regulator of nonsense t 97.8 0.00016 5.4E-09 79.6 14.1 67 16-89 180-246 (624)
77 2v6i_A RNA helicase; membrane, 97.7 1.6E-05 5.6E-10 83.4 4.8 52 34-88 1-52 (431)
78 2whx_A Serine protease/ntpase/ 97.6 2.2E-05 7.6E-10 86.0 3.8 65 17-88 172-236 (618)
79 3llm_A ATP-dependent RNA helic 97.6 0.00015 5.1E-09 69.3 8.6 69 17-89 62-131 (235)
80 2wjy_A Regulator of nonsense t 97.5 0.00077 2.6E-08 75.8 14.3 67 16-89 356-422 (800)
81 3jux_A Protein translocase sub 97.4 0.00023 8E-09 77.2 7.1 67 18-94 77-143 (822)
82 3upu_A ATP-dependent DNA helic 96.9 0.0026 9.1E-08 67.1 10.1 69 12-83 21-90 (459)
83 3rc3_A ATP-dependent RNA helic 96.7 0.00099 3.4E-08 73.4 4.8 69 11-89 124-201 (677)
84 3o8b_A HCV NS3 protease/helica 96.7 0.00079 2.7E-08 73.5 3.9 55 28-89 225-279 (666)
85 2xau_A PRE-mRNA-splicing facto 96.6 0.0036 1.2E-07 70.3 8.0 60 27-89 101-162 (773)
86 1w36_D RECD, exodeoxyribonucle 96.4 0.0049 1.7E-07 67.4 7.7 67 18-90 151-219 (608)
87 2xzl_A ATP-dependent helicase 95.8 0.016 5.5E-07 65.2 8.2 67 16-89 360-426 (802)
88 1c4o_A DNA nucleotide excision 95.6 0.029 9.9E-07 61.9 9.2 70 13-90 6-76 (664)
89 2d7d_A Uvrabc system protein B 94.7 0.076 2.6E-06 58.5 9.3 74 9-90 6-80 (661)
90 3lfu_A DNA helicase II; SF1 he 94.7 0.056 1.9E-06 59.5 8.2 67 16-90 9-77 (647)
91 3e1s_A Exodeoxyribonuclease V, 94.2 0.1 3.5E-06 56.3 8.6 64 13-85 187-250 (574)
92 2w58_A DNAI, primosome compone 93.9 0.15 5E-06 46.7 8.0 34 19-52 32-71 (202)
93 3ec2_A DNA replication protein 93.2 0.1 3.4E-06 46.9 5.4 35 18-52 16-55 (180)
94 3n70_A Transport activator; si 92.8 0.09 3.1E-06 45.4 4.3 30 22-51 11-40 (145)
95 3co5_A Putative two-component 92.7 0.12 4E-06 44.6 4.9 28 23-50 15-42 (143)
96 2o0j_A Terminase, DNA packagin 92.7 0.39 1.3E-05 48.8 9.5 73 12-91 160-232 (385)
97 2qgz_A Helicase loader, putati 92.6 0.22 7.6E-06 49.1 7.3 34 19-52 131-169 (308)
98 3cpe_A Terminase, DNA packagin 92.4 0.4 1.4E-05 52.0 9.7 73 12-91 160-232 (592)
99 1uaa_A REP helicase, protein ( 92.4 0.18 6E-06 55.8 7.0 67 17-90 3-70 (673)
100 2r44_A Uncharacterized protein 92.3 0.068 2.3E-06 53.3 3.2 35 18-52 29-63 (331)
101 3nbx_X ATPase RAVA; AAA+ ATPas 92.1 0.077 2.6E-06 56.1 3.5 33 18-50 24-56 (500)
102 1pjr_A PCRA; DNA repair, DNA r 91.7 0.35 1.2E-05 53.9 8.3 67 16-90 11-79 (724)
103 3hws_A ATP-dependent CLP prote 89.8 0.19 6.4E-06 50.9 3.6 34 19-52 18-68 (363)
104 1ofh_A ATP-dependent HSL prote 89.7 0.2 6.8E-06 49.1 3.7 34 19-52 18-67 (310)
105 1a5t_A Delta prime, HOLB; zinc 89.3 0.38 1.3E-05 48.0 5.4 37 17-53 3-42 (334)
106 2bjv_A PSP operon transcriptio 89.1 0.63 2.2E-05 44.5 6.7 32 20-51 14-45 (265)
107 3u4q_A ATP-dependent helicase/ 89.0 0.51 1.7E-05 55.9 7.0 64 17-88 11-78 (1232)
108 1jbk_A CLPB protein; beta barr 89.0 0.27 9.1E-06 43.9 3.7 34 19-52 25-60 (195)
109 1njg_A DNA polymerase III subu 88.4 0.27 9.1E-06 45.8 3.4 33 19-51 26-61 (250)
110 3te6_A Regulatory protein SIR3 88.4 0.36 1.2E-05 47.7 4.4 36 18-53 25-63 (318)
111 2chg_A Replication factor C sm 88.2 0.32 1.1E-05 44.7 3.7 33 19-51 20-54 (226)
112 4fcw_A Chaperone protein CLPB; 88.0 0.22 7.4E-06 49.0 2.6 35 19-53 20-65 (311)
113 1iqp_A RFCS; clamp loader, ext 87.8 0.29 1E-05 48.3 3.5 35 19-53 28-64 (327)
114 2p65_A Hypothetical protein PF 87.8 0.37 1.3E-05 42.8 3.9 34 19-52 25-60 (187)
115 2b8t_A Thymidine kinase; deoxy 87.8 0.44 1.5E-05 44.4 4.4 41 33-77 10-50 (223)
116 3sqw_A ATP-dependent RNA helic 86.9 6.1 0.00021 42.4 13.6 71 520-599 274-348 (579)
117 3bos_A Putative DNA replicatio 86.2 1.7 5.6E-05 40.4 7.6 34 20-53 35-70 (242)
118 3pfi_A Holliday junction ATP-d 86.1 0.4 1.4E-05 47.8 3.3 35 19-53 32-73 (338)
119 1xti_A Probable ATP-dependent 86.0 4.7 0.00016 40.4 11.5 58 531-599 249-307 (391)
120 1sxj_C Activator 1 40 kDa subu 86.0 0.58 2E-05 46.7 4.5 35 20-54 29-65 (340)
121 1g8p_A Magnesium-chelatase 38 85.6 0.33 1.1E-05 48.5 2.5 40 12-52 21-62 (350)
122 1ojl_A Transcriptional regulat 85.4 0.56 1.9E-05 46.1 3.9 30 22-51 12-41 (304)
123 1hv8_A Putative ATP-dependent 85.1 3.7 0.00012 40.7 10.0 67 522-599 228-295 (367)
124 1sxj_D Activator 1 41 kDa subu 84.8 0.32 1.1E-05 48.7 1.8 35 19-53 40-76 (353)
125 3h4m_A Proteasome-activating n 84.5 0.37 1.3E-05 46.6 2.1 40 12-52 14-68 (285)
126 3pey_A ATP-dependent RNA helic 84.0 5.9 0.0002 39.6 11.2 67 522-599 232-300 (395)
127 3syl_A Protein CBBX; photosynt 83.9 1.5 5E-05 42.8 6.3 18 36-53 68-85 (309)
128 3b9p_A CG5977-PA, isoform A; A 83.9 0.51 1.8E-05 46.0 2.9 18 35-52 54-71 (297)
129 3uk6_A RUVB-like 2; hexameric 83.6 1.3 4.4E-05 44.5 5.8 35 19-53 50-88 (368)
130 2v1x_A ATP-dependent DNA helic 83.4 6.9 0.00023 42.2 11.8 66 522-599 255-324 (591)
131 1l8q_A Chromosomal replication 83.2 2.2 7.5E-05 42.0 7.3 62 10-75 6-73 (324)
132 2zts_A Putative uncharacterize 83.0 0.72 2.5E-05 43.4 3.4 43 32-77 27-69 (251)
133 3pvs_A Replication-associated 82.7 0.61 2.1E-05 48.5 3.0 36 18-53 28-68 (447)
134 1um8_A ATP-dependent CLP prote 82.3 0.79 2.7E-05 46.4 3.6 19 35-53 72-90 (376)
135 3i5x_A ATP-dependent RNA helic 82.2 12 0.00041 39.8 13.2 70 521-599 326-399 (563)
136 3vfd_A Spastin; ATPase, microt 82.1 1.3 4.3E-05 45.2 5.1 35 19-53 118-166 (389)
137 3pxi_A Negative regulator of g 82.1 1.5 5.2E-05 48.9 6.2 35 19-53 494-539 (758)
138 1jr3_A DNA polymerase III subu 82.0 1 3.5E-05 45.3 4.4 35 19-53 19-56 (373)
139 2i4i_A ATP-dependent RNA helic 81.8 7.6 0.00026 39.3 11.0 57 532-599 276-333 (417)
140 1hqc_A RUVB; extended AAA-ATPa 81.8 0.7 2.4E-05 45.5 3.0 35 19-53 15-56 (324)
141 3pxg_A Negative regulator of g 81.6 0.72 2.5E-05 48.4 3.1 35 19-53 183-219 (468)
142 2qz4_A Paraplegin; AAA+, SPG7, 81.4 1.3 4.4E-05 42.0 4.6 34 19-52 12-56 (262)
143 2chq_A Replication factor C sm 81.4 0.69 2.4E-05 45.3 2.7 34 20-53 21-56 (319)
144 3t15_A Ribulose bisphosphate c 81.1 1.8 6.3E-05 42.0 5.6 22 37-60 38-59 (293)
145 1oyw_A RECQ helicase, ATP-depe 81.0 9.2 0.00031 40.5 11.5 56 532-599 236-293 (523)
146 3u61_B DNA polymerase accessor 80.6 3.7 0.00013 40.2 7.8 52 19-77 29-83 (324)
147 3cf0_A Transitional endoplasmi 80.4 1 3.4E-05 44.1 3.5 18 35-52 49-66 (301)
148 1lv7_A FTSH; alpha/beta domain 80.1 1.4 4.9E-05 41.7 4.4 16 36-51 46-61 (257)
149 2va8_A SSO2462, SKI2-type heli 80.1 6.8 0.00023 43.3 10.6 32 522-554 243-274 (715)
150 2c9o_A RUVB-like 1; hexameric 80.0 1.9 6.6E-05 44.9 5.7 34 20-53 41-81 (456)
151 3d8b_A Fidgetin-like protein 1 79.9 0.87 3E-05 45.8 2.9 34 19-52 87-134 (357)
152 2p6n_A ATP-dependent RNA helic 79.9 4.5 0.00015 36.4 7.5 67 522-599 44-111 (191)
153 2r62_A Cell division protease 79.7 0.47 1.6E-05 45.4 0.8 17 36-52 45-61 (268)
154 2gno_A DNA polymerase III, gam 79.7 1.4 4.7E-05 43.3 4.2 35 20-54 1-37 (305)
155 2xau_A PRE-mRNA-splicing facto 79.6 4.8 0.00016 44.9 9.1 84 452-554 241-325 (773)
156 1fnn_A CDC6P, cell division co 79.2 5.3 0.00018 40.1 8.7 35 19-53 20-62 (389)
157 2qby_B CDC6 homolog 3, cell di 79.0 1.1 3.9E-05 45.1 3.5 18 36-53 46-63 (384)
158 2j0s_A ATP-dependent RNA helic 78.9 13 0.00045 37.4 11.7 58 531-599 275-333 (410)
159 3k1j_A LON protease, ATP-depen 78.9 1.4 4.9E-05 47.7 4.4 35 19-53 44-78 (604)
160 1g41_A Heat shock protein HSLU 78.9 1.1 3.8E-05 46.3 3.3 34 19-52 18-67 (444)
161 4b4t_K 26S protease regulatory 78.0 2 6.8E-05 44.2 4.9 21 37-59 208-228 (428)
162 4b4t_L 26S protease subunit RP 77.8 2 6.9E-05 44.3 4.9 22 36-59 216-237 (437)
163 4b4t_M 26S protease regulatory 77.6 2.1 7E-05 44.1 4.9 22 36-59 216-237 (434)
164 4akg_A Glutathione S-transfera 77.5 4 0.00014 51.7 8.2 57 3-61 605-669 (2695)
165 1in4_A RUVB, holliday junction 77.2 1.7 5.7E-05 43.2 4.0 33 20-52 29-68 (334)
166 3eie_A Vacuolar protein sortin 77.0 1.4 4.6E-05 43.6 3.3 39 14-53 17-69 (322)
167 1xx6_A Thymidine kinase; NESG, 76.8 2.2 7.7E-05 38.5 4.4 39 34-76 7-45 (191)
168 4b4t_J 26S protease regulatory 76.7 2.5 8.6E-05 42.9 5.2 22 36-59 183-204 (405)
169 1r6b_X CLPA protein; AAA+, N-t 76.7 0.98 3.4E-05 50.5 2.4 35 19-53 461-506 (758)
170 1tue_A Replication protein E1; 76.1 1.6 5.4E-05 40.0 3.1 18 36-53 59-76 (212)
171 3pxi_A Negative regulator of g 76.1 1.3 4.3E-05 49.6 3.1 35 19-53 183-219 (758)
172 2gza_A Type IV secretion syste 76.0 2.8 9.6E-05 42.1 5.3 26 25-50 165-190 (361)
173 3fht_A ATP-dependent RNA helic 75.8 17 0.00057 36.5 11.3 67 522-599 255-323 (412)
174 3f9v_A Minichromosome maintena 75.8 0.81 2.8E-05 49.5 1.3 31 20-50 299-342 (595)
175 2p6r_A Afuhel308 helicase; pro 75.7 6.3 0.00022 43.4 8.6 40 200-241 113-152 (702)
176 2v1u_A Cell division control p 75.7 1.3 4.5E-05 44.5 2.9 34 19-52 22-61 (387)
177 1sxj_B Activator 1 37 kDa subu 75.4 1.9 6.5E-05 42.2 3.8 34 20-53 25-60 (323)
178 2rb4_A ATP-dependent RNA helic 75.3 8 0.00027 33.9 7.7 67 522-599 23-91 (175)
179 1sxj_A Activator 1 95 kDa subu 75.3 2 6.7E-05 45.6 4.2 50 20-76 43-111 (516)
180 3bh0_A DNAB-like replicative h 75.3 2.1 7.2E-05 42.1 4.1 42 30-75 63-104 (315)
181 3bgw_A DNAB-like replicative h 75.2 2.1 7.1E-05 44.4 4.2 42 31-76 193-234 (444)
182 2orw_A Thymidine kinase; TMTK, 75.1 3.4 0.00012 37.0 5.1 38 35-76 3-40 (184)
183 3llm_A ATP-dependent RNA helic 74.9 1.1 3.8E-05 41.9 1.9 34 200-238 154-187 (235)
184 1fuk_A Eukaryotic initiation f 74.8 8.7 0.0003 33.3 7.7 58 531-599 29-87 (165)
185 1qvr_A CLPB protein; coiled co 74.4 1.2 4.2E-05 50.5 2.4 34 19-52 561-605 (854)
186 2q6t_A DNAB replication FORK h 74.3 2 6.9E-05 44.5 3.9 46 27-75 192-237 (444)
187 2z4s_A Chromosomal replication 74.2 6.6 0.00023 40.5 7.8 17 36-52 131-147 (440)
188 2qen_A Walker-type ATPase; unk 74.1 1.8 6.1E-05 42.8 3.3 31 18-51 17-47 (350)
189 2qp9_X Vacuolar protein sortin 73.9 1.6 5.6E-05 43.7 2.9 34 19-52 54-101 (355)
190 1xwi_A SKD1 protein; VPS4B, AA 73.8 2.1 7.3E-05 42.2 3.7 17 36-52 46-62 (322)
191 4a1f_A DNAB helicase, replicat 73.6 2.5 8.6E-05 41.9 4.2 46 27-76 38-83 (338)
192 1d2n_A N-ethylmaleimide-sensit 73.6 3.1 0.00011 39.7 4.8 18 36-53 65-82 (272)
193 2r6a_A DNAB helicase, replicat 73.5 2.3 7.8E-05 44.3 4.0 47 28-77 196-242 (454)
194 1s2m_A Putative ATP-dependent 73.4 18 0.00061 36.2 10.8 57 531-599 257-315 (400)
195 2oap_1 GSPE-2, type II secreti 72.7 2.4 8.2E-05 44.8 4.0 28 23-50 248-275 (511)
196 2dr3_A UPF0273 protein PH0284; 72.7 3.7 0.00013 38.2 5.0 41 31-75 19-59 (247)
197 3hu3_A Transitional endoplasmi 72.6 1.6 5.5E-05 45.9 2.6 18 36-53 239-256 (489)
198 1e9r_A Conjugal transfer prote 72.3 3.3 0.00011 42.7 4.9 41 35-79 53-93 (437)
199 2kjq_A DNAA-related protein; s 72.1 3.9 0.00013 35.1 4.6 17 34-50 35-51 (149)
200 4b4t_I 26S protease regulatory 71.5 3.8 0.00013 41.9 5.0 39 18-58 187-237 (437)
201 3vkw_A Replicase large subunit 71.4 2.2 7.4E-05 44.0 3.1 43 36-87 162-204 (446)
202 1p9r_A General secretion pathw 71.1 5.1 0.00017 41.1 5.9 31 18-50 152-182 (418)
203 4b4t_H 26S protease regulatory 70.9 3.4 0.00012 42.7 4.5 22 36-59 244-265 (467)
204 2qby_A CDC6 homolog 1, cell di 70.5 4.8 0.00016 40.2 5.6 35 19-53 23-63 (386)
205 2zan_A Vacuolar protein sortin 70.0 2.8 9.6E-05 43.4 3.7 34 19-52 137-184 (444)
206 1q57_A DNA primase/helicase; d 69.8 2.2 7.5E-05 45.1 2.9 43 30-75 237-279 (503)
207 2r2a_A Uncharacterized protein 69.7 3.1 0.00011 37.8 3.5 18 37-54 7-24 (199)
208 1u0j_A DNA replication protein 68.4 2.9 0.0001 39.8 3.1 17 37-53 106-122 (267)
209 2pt7_A CAG-ALFA; ATPase, prote 68.0 3.7 0.00012 40.7 3.9 27 24-50 160-186 (330)
210 1t5i_A C_terminal domain of A 68.0 12 0.00042 32.7 7.1 58 531-599 30-88 (172)
211 1cr0_A DNA primase/helicase; R 67.6 3.8 0.00013 39.7 3.9 48 25-75 25-72 (296)
212 2zpa_A Uncharacterized protein 67.1 3.1 0.00011 45.1 3.4 60 17-85 176-235 (671)
213 1g5t_A COB(I)alamin adenosyltr 66.3 7.2 0.00025 35.2 5.1 41 29-73 22-62 (196)
214 1ixz_A ATP-dependent metallopr 65.9 6 0.00021 37.1 4.9 32 19-50 22-64 (254)
215 3eiq_A Eukaryotic initiation f 65.6 17 0.00059 36.5 8.7 64 524-599 271-337 (414)
216 2ius_A DNA translocase FTSK; n 65.5 7.2 0.00025 41.0 5.7 43 34-76 166-208 (512)
217 3b85_A Phosphate starvation-in 65.4 5.2 0.00018 36.6 4.1 34 14-51 5-38 (208)
218 1ry6_A Internal kinesin; kines 65.2 8.2 0.00028 38.5 5.8 36 18-53 61-103 (360)
219 1sxj_E Activator 1 40 kDa subu 65.0 2.3 8E-05 42.3 1.8 35 19-53 17-54 (354)
220 2r8r_A Sensor protein; KDPD, P 64.4 7.1 0.00024 36.2 4.8 36 37-76 8-44 (228)
221 2bwj_A Adenylate kinase 5; pho 64.1 2.8 9.7E-05 37.5 2.1 21 30-50 7-27 (199)
222 2jgn_A DBX, DDX3, ATP-dependen 63.9 15 0.0005 32.6 6.9 57 532-599 46-103 (185)
223 2j9r_A Thymidine kinase; TK1, 63.7 7.1 0.00024 35.8 4.6 39 35-77 28-66 (214)
224 2ce7_A Cell division protein F 63.5 6.2 0.00021 41.2 4.7 17 36-52 50-66 (476)
225 2fna_A Conserved hypothetical 62.7 1.8 6.1E-05 42.9 0.4 30 18-52 18-47 (357)
226 3vkg_A Dynein heavy chain, cyt 61.8 6.1 0.00021 50.7 5.0 33 18-50 1287-1319(3245)
227 1iy2_A ATP-dependent metallopr 61.7 8 0.00027 36.9 4.9 33 19-51 46-89 (278)
228 2hjv_A ATP-dependent RNA helic 61.3 22 0.00076 30.5 7.4 58 531-599 34-92 (163)
229 2w0m_A SSO2452; RECA, SSPF, un 61.3 9 0.00031 35.0 5.1 23 31-53 19-41 (235)
230 2z43_A DNA repair and recombin 61.0 8.8 0.0003 37.7 5.2 23 34-56 106-128 (324)
231 1kgd_A CASK, peripheral plasma 60.8 3.2 0.00011 36.8 1.8 17 34-50 4-20 (180)
232 2qor_A Guanylate kinase; phosp 60.5 2.7 9.1E-05 38.2 1.2 19 32-50 9-27 (204)
233 2dhr_A FTSH; AAA+ protein, hex 60.5 9.8 0.00033 39.9 5.6 34 19-52 37-81 (499)
234 3tau_A Guanylate kinase, GMP k 59.9 3.4 0.00011 37.7 1.8 17 34-50 7-23 (208)
235 3ney_A 55 kDa erythrocyte memb 59.7 3.5 0.00012 37.4 1.8 17 34-50 18-34 (197)
236 3eaq_A Heat resistant RNA depe 59.7 18 0.0006 32.9 6.7 57 531-599 30-88 (212)
237 1w5s_A Origin recognition comp 59.6 4.8 0.00016 40.8 3.1 36 18-53 27-70 (412)
238 3fho_A ATP-dependent RNA helic 59.6 5.3 0.00018 42.1 3.5 67 522-599 346-414 (508)
239 2zj8_A DNA helicase, putative 59.5 15 0.00051 40.6 7.3 39 200-240 113-151 (720)
240 2cvh_A DNA repair and recombin 59.5 7.3 0.00025 35.4 4.1 24 31-54 16-39 (220)
241 4akg_A Glutathione S-transfera 59.2 17 0.00058 46.2 8.2 37 18-54 906-942 (2695)
242 3lw7_A Adenylate kinase relate 58.8 3.6 0.00012 35.8 1.7 15 36-50 2-16 (179)
243 1n0w_A DNA repair protein RAD5 58.6 7.2 0.00025 36.0 3.9 23 32-54 21-43 (243)
244 1r6b_X CLPA protein; AAA+, N-t 58.3 5.2 0.00018 44.6 3.3 35 19-53 189-225 (758)
245 1yks_A Genome polyprotein [con 58.3 18 0.00062 37.1 7.3 54 532-599 177-230 (440)
246 3tr0_A Guanylate kinase, GMP k 58.1 3.5 0.00012 37.2 1.6 18 33-50 5-22 (205)
247 2j41_A Guanylate kinase; GMP, 58.0 3.5 0.00012 37.2 1.6 19 32-50 3-21 (207)
248 2c95_A Adenylate kinase 1; tra 57.8 5.1 0.00017 35.7 2.6 19 32-50 6-24 (196)
249 2r2a_A Uncharacterized protein 57.7 2.9 0.0001 38.0 0.9 14 227-240 87-100 (199)
250 1kht_A Adenylate kinase; phosp 57.6 3.9 0.00013 36.2 1.8 16 35-50 3-18 (192)
251 3nwj_A ATSK2; P loop, shikimat 57.6 4.5 0.00015 38.2 2.2 30 22-51 32-64 (250)
252 2eyu_A Twitching motility prot 57.0 3.1 0.00011 39.6 1.0 24 25-50 17-40 (261)
253 2v9p_A Replication protein E1; 56.7 2.5 8.4E-05 41.4 0.2 27 24-50 115-141 (305)
254 3vaa_A Shikimate kinase, SK; s 56.7 4.1 0.00014 36.7 1.8 33 19-51 8-41 (199)
255 1nlf_A Regulatory protein REPA 56.6 13 0.00044 35.4 5.4 25 32-56 27-51 (279)
256 2iut_A DNA translocase FTSK; n 56.3 13 0.00045 39.5 5.7 43 35-77 214-256 (574)
257 1w4r_A Thymidine kinase; type 56.1 10 0.00036 34.1 4.3 38 35-76 20-57 (195)
258 3vkg_A Dynein heavy chain, cyt 56.1 26 0.0009 45.1 9.2 57 3-61 564-628 (3245)
259 3hjh_A Transcription-repair-co 56.1 15 0.00051 38.3 6.1 50 34-90 13-62 (483)
260 2px0_A Flagellar biosynthesis 55.9 11 0.00039 36.4 4.9 37 35-74 105-141 (296)
261 2db3_A ATP-dependent RNA helic 55.6 29 0.00099 35.4 8.3 64 524-599 292-357 (434)
262 1u94_A RECA protein, recombina 55.5 9.9 0.00034 37.9 4.5 42 33-78 61-102 (356)
263 2y65_A Kinesin, kinesin heavy 54.9 12 0.00042 37.4 5.0 48 5-53 48-103 (365)
264 2qmh_A HPR kinase/phosphorylas 54.9 5.2 0.00018 36.3 2.0 16 35-50 34-49 (205)
265 3exa_A TRNA delta(2)-isopenten 54.7 4.9 0.00017 39.3 1.9 18 35-52 3-20 (322)
266 3kb2_A SPBC2 prophage-derived 54.6 4.7 0.00016 35.0 1.8 14 37-50 3-16 (173)
267 2x8a_A Nuclear valosin-contain 54.5 6.6 0.00022 37.6 2.9 14 37-50 46-59 (274)
268 1ex7_A Guanylate kinase; subst 54.1 5.2 0.00018 35.9 1.9 15 36-50 2-16 (186)
269 3trf_A Shikimate kinase, SK; a 54.0 5 0.00017 35.5 1.8 16 35-50 5-20 (185)
270 2i1q_A DNA repair and recombin 54.0 9.3 0.00032 37.4 4.0 24 34-57 97-120 (322)
271 3tlx_A Adenylate kinase 2; str 53.7 6.1 0.00021 37.0 2.5 16 35-50 29-44 (243)
272 1qvr_A CLPB protein; coiled co 53.6 6.5 0.00022 44.5 3.1 35 19-53 173-209 (854)
273 1bg2_A Kinesin; motor protein, 53.2 14 0.00047 36.4 5.0 48 5-53 41-96 (325)
274 3a8t_A Adenylate isopentenyltr 53.1 6.3 0.00021 39.0 2.5 18 36-53 41-58 (339)
275 3iij_A Coilin-interacting nucl 53.1 5.6 0.00019 35.0 2.0 18 34-51 10-27 (180)
276 2v54_A DTMP kinase, thymidylat 53.0 5.2 0.00018 36.0 1.8 17 34-50 3-19 (204)
277 1zak_A Adenylate kinase; ATP:A 53.0 5 0.00017 36.8 1.7 17 34-50 4-20 (222)
278 3jvv_A Twitching mobility prot 52.3 8.4 0.00029 38.5 3.3 18 33-50 121-138 (356)
279 3io5_A Recombination and repai 52.2 13 0.00044 36.4 4.5 42 37-80 30-71 (333)
280 1zd8_A GTP:AMP phosphotransfer 52.1 5.2 0.00018 36.9 1.7 18 33-50 5-22 (227)
281 3jux_A Protein translocase sub 52.1 1.4E+02 0.0049 32.7 12.9 98 441-556 399-498 (822)
282 1lvg_A Guanylate kinase, GMP k 52.1 5.8 0.0002 35.8 1.9 17 34-50 3-19 (198)
283 3cm0_A Adenylate kinase; ATP-b 52.0 4.3 0.00015 35.9 1.0 17 34-50 3-19 (186)
284 3dc4_A Kinesin-like protein NO 52.0 14 0.00047 36.7 4.8 47 5-52 58-112 (344)
285 1xp8_A RECA protein, recombina 52.0 12 0.0004 37.6 4.3 40 34-77 73-112 (366)
286 2zr9_A Protein RECA, recombina 51.3 12 0.00041 37.2 4.3 42 32-77 58-99 (349)
287 1v5w_A DMC1, meiotic recombina 51.0 14 0.00046 36.7 4.6 24 34-57 121-144 (343)
288 1svm_A Large T antigen; AAA+ f 51.0 9.3 0.00032 38.5 3.4 20 31-50 165-184 (377)
289 3l9o_A ATP-dependent RNA helic 50.6 86 0.0029 36.4 11.9 35 520-554 429-463 (1108)
290 1f9v_A Kinesin-like protein KA 50.3 11 0.00037 37.5 3.7 36 18-53 63-103 (347)
291 1fuu_A Yeast initiation factor 49.6 6.4 0.00022 39.4 2.0 40 199-240 136-175 (394)
292 3hr8_A Protein RECA; alpha and 49.5 13 0.00044 37.1 4.1 42 34-79 60-101 (356)
293 2jaq_A Deoxyguanosine kinase; 49.0 6.3 0.00022 35.3 1.7 14 37-50 2-15 (205)
294 1htw_A HI0065; nucleotide-bind 48.7 3.2 0.00011 36.2 -0.4 18 33-50 31-48 (158)
295 1nks_A Adenylate kinase; therm 48.6 5.9 0.0002 35.1 1.4 14 37-50 3-16 (194)
296 2wv9_A Flavivirin protease NS2 48.5 36 0.0012 37.2 7.8 55 531-599 409-463 (673)
297 1ly1_A Polynucleotide kinase; 48.5 6.3 0.00022 34.4 1.6 14 37-50 4-17 (181)
298 3u4q_B ATP-dependent helicase/ 48.4 15 0.0005 43.2 5.1 40 38-78 4-43 (1166)
299 1z6g_A Guanylate kinase; struc 48.4 7.3 0.00025 35.8 2.0 25 26-50 14-38 (218)
300 1f2t_A RAD50 ABC-ATPase; DNA d 48.4 11 0.00038 32.1 3.1 25 36-62 24-48 (149)
301 2plr_A DTMP kinase, probable t 48.4 5.7 0.00019 35.9 1.3 16 35-50 4-19 (213)
302 3ice_A Transcription terminati 48.3 14 0.00049 37.2 4.2 49 4-52 135-191 (422)
303 3foz_A TRNA delta(2)-isopenten 47.5 8.5 0.00029 37.5 2.4 17 36-52 11-27 (316)
304 2wwf_A Thymidilate kinase, put 47.5 6.8 0.00023 35.4 1.7 17 34-50 9-25 (212)
305 2rhm_A Putative kinase; P-loop 47.4 5.8 0.0002 35.2 1.1 16 35-50 5-20 (193)
306 1ny5_A Transcriptional regulat 47.3 13 0.00044 37.6 3.8 19 34-52 159-177 (387)
307 3tmk_A Thymidylate kinase; pho 47.0 7.1 0.00024 35.9 1.7 17 34-50 4-20 (216)
308 2rep_A Kinesin-like protein KI 46.7 12 0.00043 37.5 3.5 36 18-53 94-134 (376)
309 1m7g_A Adenylylsulfate kinase; 46.6 8 0.00027 35.1 2.0 19 32-50 22-40 (211)
310 1qhx_A CPT, protein (chloramph 46.6 7.7 0.00026 33.9 1.8 16 35-50 3-18 (178)
311 3t0q_A AGR253WP; kinesin, alph 46.5 12 0.00043 37.1 3.5 36 18-53 64-104 (349)
312 3dm5_A SRP54, signal recogniti 46.4 32 0.0011 35.3 6.6 37 36-76 101-138 (443)
313 4edh_A DTMP kinase, thymidylat 46.2 37 0.0013 30.9 6.5 17 34-50 5-21 (213)
314 1nn5_A Similar to deoxythymidy 46.1 6.9 0.00023 35.4 1.4 17 34-50 8-24 (215)
315 4etp_A Kinesin-like protein KA 46.0 13 0.00045 37.7 3.6 36 18-53 119-159 (403)
316 2z0h_A DTMP kinase, thymidylat 45.9 7.6 0.00026 34.5 1.7 14 37-50 2-15 (197)
317 1aky_A Adenylate kinase; ATP:A 45.9 7.7 0.00026 35.4 1.8 16 35-50 4-19 (220)
318 1w36_B RECB, exodeoxyribonucle 45.8 25 0.00086 41.2 6.5 46 36-82 17-71 (1180)
319 3v9p_A DTMP kinase, thymidylat 45.8 6.3 0.00021 36.6 1.1 18 33-50 23-40 (227)
320 1tev_A UMP-CMP kinase; ploop, 45.8 6.7 0.00023 34.7 1.3 16 35-50 3-18 (196)
321 2z83_A Helicase/nucleoside tri 45.6 16 0.00055 37.8 4.4 55 531-599 189-243 (459)
322 2h58_A Kinesin-like protein KI 45.5 10 0.00035 37.4 2.7 36 18-53 59-99 (330)
323 1kag_A SKI, shikimate kinase I 45.5 8.7 0.0003 33.3 2.0 16 35-50 4-19 (173)
324 3m6a_A ATP-dependent protease 45.3 15 0.00053 38.9 4.2 19 35-53 108-126 (543)
325 1zp6_A Hypothetical protein AT 44.9 5.2 0.00018 35.5 0.4 19 32-50 6-24 (191)
326 3lnc_A Guanylate kinase, GMP k 44.8 5.2 0.00018 37.0 0.4 19 32-50 24-42 (231)
327 1ypw_A Transitional endoplasmi 44.8 7.4 0.00025 43.6 1.7 17 35-51 238-254 (806)
328 3a00_A Guanylate kinase, GMP k 44.6 9.4 0.00032 33.9 2.1 16 35-50 1-16 (186)
329 3e2i_A Thymidine kinase; Zn-bi 44.4 20 0.00069 32.8 4.3 41 33-77 26-66 (219)
330 4tmk_A Protein (thymidylate ki 44.4 37 0.0013 30.9 6.1 17 34-50 2-18 (213)
331 1y63_A LMAJ004144AAA protein; 44.3 8.8 0.0003 34.0 1.8 17 34-50 9-25 (184)
332 1s96_A Guanylate kinase, GMP k 44.1 8.6 0.00029 35.4 1.8 20 31-50 12-31 (219)
333 3cf2_A TER ATPase, transitiona 44.1 11 0.00038 42.0 2.9 15 36-50 239-253 (806)
334 3i32_A Heat resistant RNA depe 44.1 71 0.0024 30.7 8.5 56 532-599 28-85 (300)
335 3crm_A TRNA delta(2)-isopenten 44.0 7.8 0.00027 38.0 1.5 16 37-52 7-22 (323)
336 2jlq_A Serine protease subunit 43.9 7.8 0.00027 40.1 1.6 36 201-239 87-122 (451)
337 2eyq_A TRCF, transcription-rep 43.7 53 0.0018 38.3 8.7 51 33-90 15-65 (1151)
338 2ewv_A Twitching motility prot 43.6 6.3 0.00022 39.7 0.8 19 32-50 133-151 (372)
339 2cdn_A Adenylate kinase; phosp 43.6 9 0.00031 34.4 1.8 15 36-50 21-35 (201)
340 2ze6_A Isopentenyl transferase 43.3 8.3 0.00028 36.3 1.6 14 37-50 3-16 (253)
341 1zuh_A Shikimate kinase; alpha 43.2 9 0.00031 33.1 1.7 15 36-50 8-22 (168)
342 4eaq_A DTMP kinase, thymidylat 42.9 36 0.0012 31.3 5.9 17 34-50 25-41 (229)
343 4ag6_A VIRB4 ATPase, type IV s 42.9 21 0.00073 35.9 4.7 40 34-77 34-73 (392)
344 3fmp_B ATP-dependent RNA helic 42.8 7 0.00024 40.7 1.1 66 524-599 324-390 (479)
345 4eun_A Thermoresistant glucoki 42.8 9.3 0.00032 34.3 1.8 17 34-50 28-44 (200)
346 1rz3_A Hypothetical protein rb 42.8 15 0.00052 32.9 3.3 27 24-50 6-37 (201)
347 1ak2_A Adenylate kinase isoenz 42.8 9.2 0.00032 35.4 1.8 16 35-50 16-31 (233)
348 2pez_A Bifunctional 3'-phospho 42.3 8.1 0.00028 33.9 1.3 17 34-50 4-20 (179)
349 4gp7_A Metallophosphoesterase; 42.1 5.8 0.0002 34.8 0.3 18 33-50 7-24 (171)
350 2vp4_A Deoxynucleoside kinase; 42.1 8.1 0.00028 35.7 1.3 16 35-50 20-35 (230)
351 2ehv_A Hypothetical protein PH 42.1 25 0.00084 32.4 4.7 24 31-54 26-49 (251)
352 3cf2_A TER ATPase, transitiona 42.1 12 0.0004 41.8 2.7 21 36-58 512-532 (806)
353 3auy_A DNA double-strand break 42.0 12 0.00042 37.5 2.7 25 36-62 26-50 (371)
354 2pbr_A DTMP kinase, thymidylat 41.8 9.6 0.00033 33.7 1.7 14 37-50 2-15 (195)
355 3b9q_A Chloroplast SRP recepto 41.7 14 0.00049 35.8 3.0 36 36-75 101-136 (302)
356 3be4_A Adenylate kinase; malar 41.7 10 0.00035 34.6 1.9 16 35-50 5-20 (217)
357 1e6c_A Shikimate kinase; phosp 41.6 11 0.00036 32.7 1.9 15 36-50 3-17 (173)
358 2yvu_A Probable adenylyl-sulfa 41.4 8.5 0.00029 34.0 1.3 16 35-50 13-28 (186)
359 1ukz_A Uridylate kinase; trans 41.3 9.4 0.00032 34.2 1.6 15 36-50 16-30 (203)
360 3c8u_A Fructokinase; YP_612366 41.2 4.9 0.00017 36.5 -0.4 28 23-50 6-37 (208)
361 1gtv_A TMK, thymidylate kinase 41.1 6.1 0.00021 35.8 0.2 14 37-50 2-15 (214)
362 3qks_A DNA double-strand break 41.1 16 0.00055 33.0 3.1 26 36-63 24-49 (203)
363 3lv8_A DTMP kinase, thymidylat 40.9 9.8 0.00034 35.5 1.6 17 34-50 26-42 (236)
364 3fb4_A Adenylate kinase; psych 40.8 9.6 0.00033 34.6 1.6 14 37-50 2-15 (216)
365 3kta_A Chromosome segregation 40.8 17 0.00057 31.8 3.2 24 36-61 27-50 (182)
366 1qf9_A UMP/CMP kinase, protein 40.8 9.4 0.00032 33.7 1.4 15 36-50 7-21 (194)
367 3dl0_A Adenylate kinase; phosp 40.7 9.7 0.00033 34.6 1.6 14 37-50 2-15 (216)
368 1wp9_A ATP-dependent RNA helic 40.6 67 0.0023 32.5 8.3 71 518-599 346-426 (494)
369 3t61_A Gluconokinase; PSI-biol 40.5 11 0.00037 33.8 1.9 15 36-50 19-33 (202)
370 3eph_A TRNA isopentenyltransfe 40.3 11 0.00037 38.3 1.9 17 36-52 3-19 (409)
371 2xb4_A Adenylate kinase; ATP-b 40.2 9.9 0.00034 34.9 1.5 14 37-50 2-15 (223)
372 2vli_A Antibiotic resistance p 40.1 8.6 0.0003 33.7 1.1 16 35-50 5-20 (183)
373 1p5z_B DCK, deoxycytidine kina 40.0 9.1 0.00031 36.2 1.3 16 35-50 24-39 (263)
374 3gbj_A KIF13B protein; kinesin 40.0 21 0.00073 35.4 4.0 36 18-53 70-111 (354)
375 2zfi_A Kinesin-like protein KI 39.9 25 0.00085 35.1 4.5 35 19-53 68-108 (366)
376 3d3q_A TRNA delta(2)-isopenten 39.7 10 0.00035 37.5 1.6 17 36-52 8-24 (340)
377 3dzd_A Transcriptional regulat 39.7 27 0.00093 34.9 4.8 28 23-50 140-167 (368)
378 1znw_A Guanylate kinase, GMP k 39.7 11 0.00038 34.0 1.8 20 31-50 16-35 (207)
379 2orv_A Thymidine kinase; TP4A 39.5 26 0.00089 32.4 4.2 39 34-76 18-56 (234)
380 1knq_A Gluconate kinase; ALFA/ 39.5 9.9 0.00034 33.1 1.4 16 35-50 8-23 (175)
381 3o8b_A HCV NS3 protease/helica 39.1 9.8 0.00034 41.4 1.5 37 199-240 295-331 (666)
382 3a4m_A L-seryl-tRNA(SEC) kinas 39.1 9.6 0.00033 36.0 1.3 16 35-50 4-19 (260)
383 1e4v_A Adenylate kinase; trans 38.7 10 0.00036 34.4 1.4 14 37-50 2-15 (214)
384 4ddu_A Reverse gyrase; topoiso 38.6 1.9E+02 0.0063 33.6 12.2 55 528-598 305-360 (1104)
385 2d7d_A Uvrabc system protein B 38.3 1.3E+02 0.0045 32.5 10.4 55 532-598 445-501 (661)
386 3lre_A Kinesin-like protein KI 38.2 20 0.0007 35.6 3.6 36 18-53 83-124 (355)
387 2pt5_A Shikimate kinase, SK; a 37.8 12 0.0004 32.3 1.5 14 37-50 2-15 (168)
388 2l8b_A Protein TRAI, DNA helic 37.6 70 0.0024 28.4 6.4 70 10-83 26-96 (189)
389 3bs4_A Uncharacterized protein 37.3 23 0.0008 33.4 3.7 48 35-88 21-69 (260)
390 3tqc_A Pantothenate kinase; bi 37.1 24 0.00081 34.6 3.8 30 21-50 72-107 (321)
391 4hlc_A DTMP kinase, thymidylat 36.7 11 0.00038 34.2 1.3 16 35-50 2-17 (205)
392 1v8k_A Kinesin-like protein KI 36.7 21 0.00072 36.2 3.4 36 18-53 132-173 (410)
393 3uie_A Adenylyl-sulfate kinase 36.2 14 0.0005 33.0 2.0 18 33-50 23-40 (200)
394 2ocp_A DGK, deoxyguanosine kin 36.0 11 0.00038 35.0 1.1 16 35-50 2-17 (241)
395 1gvn_B Zeta; postsegregational 36.0 19 0.00066 34.5 2.9 15 36-50 34-48 (287)
396 1rj9_A FTSY, signal recognitio 35.6 41 0.0014 32.6 5.2 37 35-75 102-138 (304)
397 3cmu_A Protein RECA, recombina 35.3 23 0.00078 43.6 3.9 41 34-78 1426-1466(2050)
398 1x88_A Kinesin-like protein KI 35.3 21 0.00071 35.6 3.1 36 18-53 66-107 (359)
399 2vhj_A Ntpase P4, P4; non- hyd 35.2 20 0.00067 35.2 2.8 20 34-53 122-141 (331)
400 3cmw_A Protein RECA, recombina 34.1 26 0.00088 42.4 4.1 40 32-75 31-70 (1706)
401 3p32_A Probable GTPase RV1496/ 34.0 72 0.0024 31.5 6.9 51 19-73 59-113 (355)
402 3b6u_A Kinesin-like protein KI 33.9 21 0.00071 35.8 2.8 36 18-53 79-120 (372)
403 3kl4_A SRP54, signal recogniti 33.9 37 0.0013 34.7 4.8 36 37-76 99-135 (433)
404 1c4o_A DNA nucleotide excision 33.7 1.7E+02 0.0057 31.7 10.3 56 531-598 438-495 (664)
405 3ld9_A DTMP kinase, thymidylat 33.2 14 0.00047 34.1 1.3 16 35-50 21-36 (223)
406 1tf7_A KAIC; homohexamer, hexa 33.1 42 0.0014 35.2 5.3 42 31-76 277-318 (525)
407 3cob_A Kinesin heavy chain-lik 33.0 15 0.0005 36.8 1.5 36 18-53 58-98 (369)
408 2yjt_D ATP-dependent RNA helic 39.2 9.1 0.00031 33.4 0.0 65 524-599 21-87 (170)
409 2bdt_A BH3686; alpha-beta prot 32.9 13 0.00045 32.8 1.1 15 36-50 3-17 (189)
410 2heh_A KIF2C protein; kinesin, 32.8 24 0.00083 35.5 3.1 36 18-53 112-153 (387)
411 3u06_A Protein claret segregat 32.7 17 0.00057 37.0 1.9 36 18-53 117-157 (412)
412 3nwn_A Kinesin-like protein KI 32.6 27 0.00093 34.7 3.4 34 20-53 84-123 (359)
413 1goj_A Kinesin, kinesin heavy 32.5 24 0.00081 35.1 2.9 36 18-53 58-99 (355)
414 2wbe_C Bipolar kinesin KRP-130 32.3 28 0.00096 34.8 3.4 36 18-53 78-119 (373)
415 1t5c_A CENP-E protein, centrom 32.2 20 0.00068 35.6 2.3 36 18-53 55-96 (349)
416 2bbw_A Adenylate kinase 4, AK4 32.1 17 0.00059 33.7 1.8 16 35-50 27-42 (246)
417 1vht_A Dephospho-COA kinase; s 31.9 14 0.00047 33.6 1.0 16 35-50 4-19 (218)
418 2owm_A Nckin3-434, related to 31.5 34 0.0012 35.1 4.0 36 18-53 114-155 (443)
419 4a14_A Kinesin, kinesin-like p 31.4 25 0.00086 34.8 2.9 36 18-53 61-102 (344)
420 2cbz_A Multidrug resistance-as 31.3 14 0.00047 34.5 0.9 43 3-50 4-46 (237)
421 2qt1_A Nicotinamide riboside k 30.9 12 0.00041 33.7 0.4 16 35-50 21-36 (207)
422 3asz_A Uridine kinase; cytidin 30.9 15 0.00052 33.0 1.1 17 34-50 5-21 (211)
423 1vma_A Cell division protein F 30.9 53 0.0018 31.8 5.1 18 36-53 105-122 (306)
424 4a74_A DNA repair and recombin 30.8 16 0.00055 33.2 1.4 23 31-53 21-43 (231)
425 2vvg_A Kinesin-2; motor protei 30.7 23 0.00077 35.2 2.4 36 18-53 67-108 (350)
426 3e70_C DPA, signal recognition 30.5 42 0.0014 32.9 4.4 16 35-50 129-144 (328)
427 3dr5_A Putative O-methyltransf 30.5 1.6E+02 0.0055 26.5 8.2 42 13-54 33-75 (221)
428 3qf7_A RAD50; ABC-ATPase, ATPa 30.5 29 0.00098 34.6 3.2 24 37-62 25-48 (365)
429 3f8t_A Predicted ATPase involv 30.5 20 0.00069 37.1 2.1 30 20-50 217-253 (506)
430 2v6i_A RNA helicase; membrane, 30.1 70 0.0024 32.5 6.2 55 531-599 170-224 (431)
431 2nr8_A Kinesin-like protein KI 30.0 32 0.0011 34.2 3.4 35 19-53 82-122 (358)
432 3tqf_A HPR(Ser) kinase; transf 29.9 24 0.00081 31.2 2.1 16 35-50 16-31 (181)
433 2iyv_A Shikimate kinase, SK; t 29.9 22 0.00076 31.1 2.1 15 36-50 3-17 (184)
434 1sgw_A Putative ABC transporte 29.7 16 0.00055 33.4 1.1 40 3-50 11-50 (214)
435 3tif_A Uncharacterized ABC tra 29.6 15 0.00052 34.1 0.9 19 32-50 28-46 (235)
436 1pzn_A RAD51, DNA repair and r 29.6 21 0.00071 35.4 2.0 23 34-56 130-152 (349)
437 3lda_A DNA repair protein RAD5 29.4 41 0.0014 34.0 4.2 21 34-54 177-197 (400)
438 1via_A Shikimate kinase; struc 29.1 22 0.00077 30.8 1.9 14 37-50 6-19 (175)
439 1odf_A YGR205W, hypothetical 3 28.9 32 0.0011 33.0 3.2 14 37-50 33-46 (290)
440 2pze_A Cystic fibrosis transme 28.9 16 0.00053 33.8 0.8 43 3-50 7-49 (229)
441 2og2_A Putative signal recogni 28.8 33 0.0011 34.1 3.3 36 36-75 158-193 (359)
442 1ihu_A Arsenical pump-driving 28.6 51 0.0017 35.2 5.0 35 35-73 8-42 (589)
443 4a4z_A Antiviral helicase SKI2 28.6 1E+02 0.0036 35.2 7.8 28 529-556 333-360 (997)
444 3cmu_A Protein RECA, recombina 28.1 35 0.0012 42.0 3.8 41 34-78 1080-1120(2050)
445 3l0o_A Transcription terminati 28.0 42 0.0014 33.8 3.8 46 7-52 142-192 (427)
446 2ff7_A Alpha-hemolysin translo 27.9 16 0.00056 34.1 0.8 43 3-50 8-50 (247)
447 3h1t_A Type I site-specific re 27.8 1.8E+02 0.006 30.8 9.2 68 519-586 424-494 (590)
448 2pcj_A ABC transporter, lipopr 27.7 16 0.00054 33.6 0.7 41 3-50 5-45 (224)
449 3bfn_A Kinesin-like protein KI 27.3 22 0.00075 35.8 1.7 36 18-53 76-117 (388)
450 1ye8_A Protein THEP1, hypothet 27.3 23 0.0008 31.1 1.7 15 37-51 2-16 (178)
451 2ghi_A Transport protein; mult 27.3 18 0.0006 34.3 0.9 44 3-50 18-61 (260)
452 2wsm_A Hydrogenase expression/ 27.2 45 0.0015 29.9 3.8 33 18-50 11-45 (221)
453 2jeo_A Uridine-cytidine kinase 27.1 19 0.00064 33.5 1.1 30 22-51 12-41 (245)
454 1cke_A CK, MSSA, protein (cyti 27.0 24 0.00083 32.0 1.8 16 35-50 5-20 (227)
455 1tq4_A IIGP1, interferon-induc 26.8 42 0.0014 34.1 3.7 29 22-50 36-84 (413)
456 2i3b_A HCR-ntpase, human cance 26.6 27 0.00093 31.1 2.0 16 35-50 1-16 (189)
457 1sq5_A Pantothenate kinase; P- 26.4 39 0.0013 32.7 3.3 18 33-50 78-95 (308)
458 1mv5_A LMRA, multidrug resista 26.2 16 0.00055 34.1 0.4 42 3-50 2-43 (243)
459 3cio_A ETK, tyrosine-protein k 26.2 1.3E+02 0.0045 28.7 7.1 34 36-73 105-139 (299)
460 1z6t_A APAF-1, apoptotic prote 26.0 35 0.0012 36.3 3.2 28 25-52 133-164 (591)
461 1byi_A Dethiobiotin synthase; 26.0 63 0.0022 29.0 4.5 33 37-73 4-36 (224)
462 1zu4_A FTSY; GTPase, signal re 26.0 72 0.0025 31.0 5.1 33 37-73 107-139 (320)
463 1vpl_A ABC transporter, ATP-bi 25.9 19 0.00066 33.9 0.9 19 32-50 38-56 (256)
464 1g6h_A High-affinity branched- 25.6 19 0.00066 33.9 0.8 41 3-50 8-48 (257)
465 2qi9_C Vitamin B12 import ATP- 25.6 19 0.00066 33.7 0.8 19 32-50 23-41 (249)
466 3bfv_A CAPA1, CAPB2, membrane 25.5 1.5E+02 0.005 27.9 7.2 34 36-73 83-117 (271)
467 2d2e_A SUFC protein; ABC-ATPas 25.4 20 0.00067 33.7 0.8 41 3-50 4-44 (250)
468 2oze_A ORF delta'; para, walke 25.4 1.1E+02 0.0038 28.9 6.5 47 23-73 21-71 (298)
469 1ji0_A ABC transporter; ATP bi 25.3 20 0.00067 33.4 0.8 41 3-50 7-47 (240)
470 2zu0_C Probable ATP-dependent 25.3 20 0.00069 34.0 0.9 41 3-50 21-61 (267)
471 2nq2_C Hypothetical ABC transp 25.2 20 0.00069 33.7 0.9 42 3-50 5-46 (253)
472 1ypw_A Transitional endoplasmi 25.2 23 0.0008 39.5 1.6 24 35-60 511-534 (806)
473 2if2_A Dephospho-COA kinase; a 25.1 26 0.00088 31.2 1.6 14 37-50 3-16 (204)
474 2yz2_A Putative ABC transporte 24.9 21 0.00071 33.9 0.9 48 1-50 1-48 (266)
475 3umf_A Adenylate kinase; rossm 24.8 21 0.00071 32.7 0.9 18 33-50 27-44 (217)
476 3hjn_A DTMP kinase, thymidylat 24.7 28 0.00094 31.2 1.7 14 37-50 2-15 (197)
477 3b5x_A Lipid A export ATP-bind 24.6 18 0.00063 38.7 0.5 43 3-50 342-384 (582)
478 2ixe_A Antigen peptide transpo 24.4 21 0.00073 33.9 0.9 44 3-50 17-60 (271)
479 1xjc_A MOBB protein homolog; s 23.9 74 0.0025 27.7 4.3 37 37-78 6-43 (169)
480 3p9n_A Possible methyltransfer 23.8 1.2E+02 0.0041 26.2 5.9 46 6-51 11-60 (189)
481 1ltq_A Polynucleotide kinase; 23.7 27 0.00093 33.4 1.6 14 37-50 4-17 (301)
482 3gfo_A Cobalt import ATP-bindi 23.6 22 0.00074 34.0 0.8 42 3-50 8-49 (275)
483 4dzr_A Protein-(glutamine-N5) 23.5 85 0.0029 27.6 4.9 38 17-54 10-49 (215)
484 2xxa_A Signal recognition part 23.2 76 0.0026 32.4 4.9 34 37-73 102-135 (433)
485 1b0u_A Histidine permease; ABC 23.0 24 0.00081 33.4 0.9 41 3-50 7-47 (262)
486 2bbs_A Cystic fibrosis transme 22.8 23 0.00079 34.1 0.8 17 34-50 63-79 (290)
487 3zq6_A Putative arsenical pump 22.7 77 0.0026 30.8 4.7 36 36-75 15-50 (324)
488 3qkt_A DNA double-strand break 22.7 43 0.0015 32.9 2.8 26 36-63 24-49 (339)
489 2ihy_A ABC transporter, ATP-bi 22.5 24 0.00082 33.7 0.8 42 2-50 21-62 (279)
490 4e22_A Cytidylate kinase; P-lo 22.4 33 0.0011 32.0 1.9 17 34-50 26-42 (252)
491 1e69_A Chromosome segregation 22.4 40 0.0014 32.8 2.5 24 36-61 25-48 (322)
492 2ffh_A Protein (FFH); SRP54, s 22.3 88 0.003 31.8 5.1 18 37-54 100-117 (425)
493 2ga8_A Hypothetical 39.9 kDa p 22.3 46 0.0016 33.0 2.9 29 23-51 6-40 (359)
494 2olj_A Amino acid ABC transpor 22.3 25 0.00085 33.3 0.9 41 3-50 25-65 (263)
495 3nh6_A ATP-binding cassette SU 22.1 22 0.00075 34.6 0.5 42 3-50 54-95 (306)
496 4g1u_C Hemin import ATP-bindin 22.1 24 0.00084 33.4 0.8 39 32-74 34-72 (266)
497 1uf9_A TT1252 protein; P-loop, 22.1 30 0.001 30.6 1.4 15 36-50 9-23 (203)
498 4h1g_A Maltose binding protein 21.4 44 0.0015 36.8 2.8 35 18-52 441-480 (715)
499 3sr0_A Adenylate kinase; phosp 21.3 34 0.0012 31.0 1.6 14 37-50 2-15 (206)
500 1p6x_A Thymidine kinase; P-loo 21.2 27 0.00094 34.3 1.0 16 35-50 7-22 (334)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=1.9e-66 Score=571.59 Aligned_cols=486 Identities=21% Similarity=0.292 Sum_probs=331.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhhhh
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~~~ 93 (601)
|++ ||+|++||.+|++++.+++++++|||||||||+|||+|++.++... ++ ||+|+|||++|++|+++|++++...
T Consensus 2 ~~~-R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~-kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 2 YEN-RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL-KVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp ----CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC-eEEEECCCHHHHHHHHHHHHHHhhc
Confidence 665 9999999999999999999999999999999999999999998754 56 9999999999999999999998642
Q ss_pred hcccCCCccceEEEeecCcccccc-chhhhhccChhhHHH---HhHHhhhHHHHhhhhcCCCCCCCccccchHHhhhc-c
Q 007505 94 QTRHLGPAAKILAIGLSSRKNLCV-NSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNIETCEFFENYEKAASA-A 168 (601)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~r~~lC~-~~~~~~~~~~~~~~~---~c~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~-~ 168 (601)
.+++++.++||.++|+ ++.+..... ...++ .|..+...|.. .+...|+||.+.....+. .
T Consensus 78 --------~~~~~~~l~gr~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~~------~~~~~C~~~~~~~~~gd~~~ 142 (620)
T 4a15_A 78 --------MKIRAIPMQGRVNMCILYRMVDDLHE-INAESLAKFCNMKKREVMA------GNEAACPYFNFKIRSDETKR 142 (620)
T ss_dssp --------SCCCEEECCCHHHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHHT------TCTTSSTTCSGGGGCHHHHH
T ss_pred --------cCeEEEEEECCCcccccChhhhhccc-chhhhHHHHHHHHHhcccc------CCCCCCCcccccCcccchhH
Confidence 2678999999999999 988765433 23343 78877654421 123689999875321110 0
Q ss_pred CCCCCCCCHHHHHHhccccCcchhHHHHHhhccCcEEEecCccccCHHhhhHhhh---ccCCCcEEEEeCCCChHHHHHH
Q 007505 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK---EMQKESVVVFDEAHNIDNVCIE 245 (601)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~Cpy~~~r~~~~~adivv~n~~~ll~~~~~~~~~~---~l~~~~ilIiDEAHnl~~~~~~ 245 (601)
.+...+++++++.+.|+.++.||||.+|+.+.+|||||+|||||||+.+++.+.. ..++++++||||||||+|+|++
T Consensus 143 ~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~ 222 (620)
T 4a15_A 143 FLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRS 222 (620)
T ss_dssp HHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHH
T ss_pred HhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHH
Confidence 1133578999999999999999999999999999999999999999998865322 2468999999999999999999
Q ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHH----HHHHHHHHhhcCCCccccccccCCCCChhhhhhhcC
Q 007505 246 ALSVSVRRQTLEGATRNLSRINQEIERFKA-TDAGRLRAE----YNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVP 320 (601)
Q Consensus 246 ~~s~~is~~~l~~~~~~l~~~~~~~~~~~~-~~~~~l~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (601)
++|.++|..+|..+.+++..+.... +.. .....+... +..+...+.. . ..
T Consensus 223 ~~S~~ls~~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~-~~--------- 277 (620)
T 4a15_A 223 IGSFRISVESLNRADREAQAYGDPE--LSQKIHVSDLIEMIRSALQSMVSERCG-------------K-GD--------- 277 (620)
T ss_dssp HHCEEEEHHHHHHHHHHHHHTTCCE--EETTEEHHHHHHHHHHHHHHHHHHHCS-------------S-SC---------
T ss_pred hhcceeCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHhhc-------------c-cc---------
Confidence 9999999999999988776542100 000 001111111 1111111100 0 00
Q ss_pred CchhchhhHHHHHHHHHHHHHhhhhcccccccChhhHHHHHHhhhccCcchhhhhHHHHHHHHHHhhccCCCccchhHHH
Q 007505 321 GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTI 400 (601)
Q Consensus 321 ~~i~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 400 (601)
..+ ....+...+..+.....+. ...++..+.. +.+.+.. ............+..+
T Consensus 278 ~~~-~~~~l~~~~~~~~~~~~~~----------l~~~~~~l~~-----------~~~~~~~---~~~~~~~~~~~~~~~~ 332 (620)
T 4a15_A 278 VRI-RFQEFMEYMRIMNKRSERE----------IRSLLNYLYL-----------FGEYVEN---EKEKVGKVPFSYCSSV 332 (620)
T ss_dssp EEE-CTHHHHHHHHHHHTCCHHH----------HHHHHHHHHH-----------HHHHHHH---HHHHTTSCCCCHHHHH
T ss_pred cCC-ChHHHHHHHHHhhcccHHH----------HHHHHHHHHH-----------HHHHHHh---hccccccccccHHHHH
Confidence 000 0111111111110000000 0000111100 0000000 0000001112234455
Q ss_pred HhHHHhhcccC-CceEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhccCEEEEecCCCCCccchhhhcCCCCcccc
Q 007505 401 CDFATLVGTYT-RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479 (601)
Q Consensus 401 ~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ldps~~l~~l~~~~~svIltSgTLsp~~~f~~~Lg~~~~~~~ 479 (601)
.+|+......+ .++..|++..+ +..|+++|+||+..|+ +| ++++||||||||+|+++|.+.||++ ....
T Consensus 333 ~~fl~~~~~~~~~~~~~~~~~~~-------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-~~~~ 402 (620)
T 4a15_A 333 ASRIIAFSDQDEEKYAAILSPED-------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-IPFK 402 (620)
T ss_dssp HHHHHHHHTSCTTTEEEEEECGG-------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-CCEE
T ss_pred HHHHHHHhhcCCCCEEEEEEeCC-------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-ceee
Confidence 56665553333 37888887542 4689999999999999 99 9999999999999999999999998 6667
Q ss_pred cceeeecCCceeeeeeecCCCCCcceeeeccCCChHHHHHHHHHHHHhhcccCCeEEEEecCHHHHHHHHHHHHhcchHH
Q 007505 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559 (601)
Q Consensus 480 ~~~~~~~~~~~~~~~i~~g~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~ 559 (601)
+++++++..+....+ +. .++++|+.|+ +.+++++++.|.++++.+|||+|||||||.+|+++++.|+.
T Consensus 403 ~~~spf~~~~~~~~~-~~-----~~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~----- 470 (620)
T 4a15_A 403 KIGEIFPPENRYIAY-YD-----GVSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF----- 470 (620)
T ss_dssp ECCCCSCGGGEEEEE-EC-----CC-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS-----
T ss_pred ecCCCCCHHHeEEEE-eC-----CCCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh-----
Confidence 788888877765443 22 3677887775 45678999999999999999999999999999999999962
Q ss_pred HHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEEEcC
Q 007505 560 EIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFSVAR 601 (601)
Q Consensus 560 ~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfaV~R 601 (601)
+. .. |+++ ..++..++++|+ ++|||||||+|
T Consensus 471 -~~--~~---~~q~~~~~~~~~ll~~f~-----~~~~vL~~v~~ 503 (620)
T 4a15_A 471 -EH--MK---EYRGIDQKELYSMLKKFR-----RDHGTIFAVSG 503 (620)
T ss_dssp -CC--EE---CCTTCCSHHHHHHHHHHT-----TSCCEEEEETT
T ss_pred -cc--hh---ccCCCChhHHHHHHHHhc-----cCCcEEEEEec
Confidence 21 22 7776 346788999999 47899999975
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=1.6e-55 Score=481.69 Aligned_cols=435 Identities=20% Similarity=0.276 Sum_probs=297.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhhhh
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~~~ 93 (601)
|++ ||+|.+||..|++++.+++++++|||||||||++||+|++.. +. +++|+|+|++|++|+.++++.+.+
T Consensus 2 ~~~-r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~-~v~i~~pt~~l~~q~~~~~~~l~~- 72 (551)
T 3crv_A 2 VKL-RDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KP-KVLFVVRTHNEFYPIYRDLTKIRE- 72 (551)
T ss_dssp CSC-CHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CS-EEEEEESSGGGHHHHHHHHTTCCC-
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CC-eEEEEcCCHHHHHHHHHHHHHHhh-
Confidence 654 999999999999999999999999999999999999999862 46 999999999999999999998743
Q ss_pred hcccCCCccceEEEeecCccccccchhhhhccChhhHHHHhHHhhhHHHHhhhhcCCCCCCCccccchHHhhhccCCCCC
Q 007505 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173 (601)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~r~~lC~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 173 (601)
..+++++.++||+|+|+++.+. .. .... .|. .|++|.+..... .
T Consensus 73 -------~~~~~~~~l~gr~~~c~~~~~~-~~-~~~~--~c~------------------~c~~~~~~~~~g-------~ 116 (551)
T 3crv_A 73 -------KRNITFSFLVGKPSSCLYAEKG-AE-SEDI--PCK------------------YCELKGSIVEVK-------T 116 (551)
T ss_dssp -------SSCCCEEECCCHHHHCTTBCTT-CC-GGGC--CGG------------------GCTTTTCCCCCC-------C
T ss_pred -------hcCccEEEEccccccCcCchhc-CC-Cccc--ccC------------------CCCCcccccccc-------c
Confidence 2257789999999999998765 32 1111 342 477765421100 0
Q ss_pred CCCHHHHH----HhccccCcchhHHHHHhhccCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCChHHHHHHhccc
Q 007505 174 VYTLQDLR----AFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249 (601)
Q Consensus 174 ~~~~~~l~----~~~~~~~~Cpy~~~r~~~~~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHnl~~~~~~~~s~ 249 (601)
..+.+.+. +.|..++.|||+.+|+.+..|||||+||+|||++..+..+. ..++..++||||||||+| |++++|.
T Consensus 117 ~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~-~~~~~~~vIiDEAHnl~d-~~~~~s~ 194 (551)
T 3crv_A 117 DDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID-IDLREYMIVIDEAHNLDK-VNELEER 194 (551)
T ss_dssp CSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC-CCSTTEEEEETTGGGGGG-GGGGGCE
T ss_pred cCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC-CCcCCeEEEEecccchHH-HHHhhce
Confidence 22333322 23457899999999999999999999999999998776532 235889999999999999 9999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHhhcCCCccccccccCCCCChhhhhhhcCCchhchhhH
Q 007505 250 SVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329 (601)
Q Consensus 250 ~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 329 (601)
+|+..++..+.+++...... ..+..+...+.... .. ...+......+ ..+
T Consensus 195 ~ls~~~l~~~~~~l~~~~~~-------------~~l~~l~~~l~~~~-~~-~~~~~~~~~~~---------------~~~ 244 (551)
T 3crv_A 195 SLSEITIQMAIKQSKSEESR-------------RILSKLLNQLREVV-LP-DEKYIKVENVP---------------KLS 244 (551)
T ss_dssp EEEHHHHHHHHHHCSCHHHH-------------HHHHHHHHHHTTSC-CS-CSSCEECSCCC---------------CCC
T ss_pred ecCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh-hc-cccccccccCh---------------HHH
Confidence 99999999988866543210 11222222222200 00 00000000000 011
Q ss_pred HHHHHHHHHHHHhhhhcccccccChhhHHHHHHhhhccCcchhhhhHHHHHHHHHHhhccCCCccchhHHHHhHHHhhcc
Q 007505 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409 (601)
Q Consensus 330 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~f~~~~~~ 409 (601)
...+..+.+.+.+.. ....+. .......+..+.+|+.....
T Consensus 245 ~~~l~~l~~~l~~~~--------------~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~ 285 (551)
T 3crv_A 245 KEELEILADDYEDIR--------------KDSLKQ-------------------------GKVNKIHIGSILRFFSLLSI 285 (551)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHT-------------------------TCBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------Hhhhhc-------------------------CCcccchHHHHHHHHHHHhc
Confidence 111222221111100 000000 00001112233333322211
Q ss_pred cCCceEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhcc-CEEEEecCCCCCccchhhhcCCC-Ccc----ccccee
Q 007505 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLNFH-PVV----SRSFKM 483 (601)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ldps~~l~~l~~~~-~svIltSgTLsp~~~f~~~Lg~~-~~~----~~~~~~ 483 (601)
+++++ .+. .+ .++++|+||+..|+ +++++ +++|||||||+|+++|.+.||++ +.. ..++++
T Consensus 286 -~~~~v--~~~--------~~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~s 352 (551)
T 3crv_A 286 -GSFIP--FSY--------SK-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQK 352 (551)
T ss_dssp -SSCEE--EEE--------TT-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTS
T ss_pred -cCCeE--ecc--------CC-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCC
Confidence 33442 221 13 89999999999999 99999 99999999999999999999997 332 445677
Q ss_pred eecCCceeeeeeecCCCCCcceeeeccCCChHHHHHHHHHHHHhhcccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhc
Q 007505 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563 (601)
Q Consensus 484 ~~~~~~~~~~~i~~g~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~ 563 (601)
++ +++.. .+++. .+++||+.|+ +.+.+++++.|.++++.+|||+|||||||.+|+++++. .
T Consensus 353 pf-~~~~~-l~v~~-----~~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~-----------~ 413 (551)
T 3crv_A 353 RV-SGSYE-CYIGV-----DVTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR-----------I 413 (551)
T ss_dssp CC-SCEEE-EEEEC-----SCCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-----------C
T ss_pred cC-CCceE-EEEeC-----CCCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-----------c
Confidence 77 55553 33433 4677888776 56778999999999999999999999999999999972 2
Q ss_pred CCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEEcC
Q 007505 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR 601 (601)
Q Consensus 564 ~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV~R 601 (601)
.++||+|+++. +...+++.|++ . .++|||||||
T Consensus 414 ~~~v~~q~~~~-~~~~~~~~~~~---~-~~~vl~~v~g 446 (551)
T 3crv_A 414 SLPKYVESEDS-SVEDLYSAISA---N-NKVLIGSVGK 446 (551)
T ss_dssp CSSEEECCSSC-CHHHHHHHTTS---S-SSCEEEEESS
T ss_pred CCcEEEcCCCC-CHHHHHHHHHh---c-CCeEEEEEec
Confidence 57899999873 45678999983 2 4799999985
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.5e-50 Score=434.34 Aligned_cols=425 Identities=18% Similarity=0.246 Sum_probs=241.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
.+|+ +||+|.+||..|++++.+++++++|||||||||++||+|++.+ ++ +++|+|+|+++++|++++++.+
T Consensus 4 ~~~~-~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~-~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKLQ-LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK-KVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC-EEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC-cEEEEcCCHHHHHHHHHHHHhc-
Confidence 3575 4999999999999999999999999999999999999998764 46 9999999999999999998874
Q ss_pred hhhcccCCCccceEEEeecCccccccchhhhhccChhhHHHHhHHhhhHHHHhhhhcCCCCCCCccccchHHhhhccCCC
Q 007505 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171 (601)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~r~~lC~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 171 (601)
+++++.++||+++|+++...... + +..| ..|++++......+ ..+
T Consensus 75 -----------~~~~~~l~gr~~lC~~~~~~~~~--~--~~~c------------------~~c~~~~~~~~~gd--~~~ 119 (540)
T 2vl7_A 75 -----------GLKTGFLIGKSASCIYAQGDEEP--D--EINC------------------SKCRLKDKIKTIED--KEP 119 (540)
T ss_dssp -----------TCCEEEC--------------------------------------------------------------
T ss_pred -----------CCcEEEecCCccccCCchhcccc--c--ccCC------------------CCCCchhccccccc--CCc
Confidence 24578899999999997653211 0 0122 13555443221111 112
Q ss_pred CCCCCHHHHHHhccccCcchhHHHHHhhccCcEEEecCccccCHHhhhHhh-----hccCCCcEEEEeCCCChHHHHHHh
Q 007505 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS-----KEMQKESVVVFDEAHNIDNVCIEA 246 (601)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~Cpy~~~r~~~~~adivv~n~~~ll~~~~~~~~~-----~~l~~~~ilIiDEAHnl~~~~~~~ 246 (601)
..+| .+.+..++.|||+.+|+.+..|||||+||+|||++..+..+. ..+++.+++|||||||+++ ++++
T Consensus 120 ~~~~-----~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~ 193 (540)
T 2vl7_A 120 SKLI-----EEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKW 193 (540)
T ss_dssp ------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGG
T ss_pred HHHH-----HHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH-HHHH
Confidence 2233 234567899999999999999999999999999998776543 1356899999999999966 8999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHhhcCCCccccccccCCCCChhhhhhhcCCchhch
Q 007505 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRA 326 (601)
Q Consensus 247 ~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 326 (601)
+|.+++..++..+.+++..... ....+...+...+..+.+.+..... ...+......+. ..
T Consensus 194 ~s~~ls~~~l~~~~~~l~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~---~~~~~~~~~~~~------------~~ 254 (540)
T 2vl7_A 194 FTRKISRKMLERALKEIEIVER----LNRIDAKKVKDYINLLIDYMSKLIK---DGRCHELSLMPL------------PD 254 (540)
T ss_dssp GCEEECHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHHHHHTSCC---SSSEEEESCCCC------------CC
T ss_pred hccccCHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHHHHHHHhhc---cccccchhhccc------------cc
Confidence 9999999999999887765421 1111223333334444444432100 000000000000 00
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccChhhHHHHHHhhhccCcchhhhhHHHHHHHHHHhhccCCCccchhHHHHhHHHh
Q 007505 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406 (601)
Q Consensus 327 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~f~~~ 406 (601)
......+..+.+.+.+ ... ... ....+..+.+|..
T Consensus 255 ~~~l~~l~~~~~~~~~---~~~---------------------~~~--------------------~~~~l~~~l~~~~- 289 (540)
T 2vl7_A 255 RETNGELIVVTRAYLN---IDE---------------------GPV--------------------KKSSLKSLLKFVE- 289 (540)
T ss_dssp HHHHHHHHHHHHHHHT---TCC---------------------SSS--------------------CCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH---hhc---------------------cCc--------------------cHHHHHHHHHHHH-
Confidence 0111111111111100 000 000 0001112222221
Q ss_pred hcccCCceEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhccCEEEEecCCCCCc----cchhhhcCCCCcccccce
Q 007505 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI----DLYPRLLNFHPVVSRSFK 482 (601)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ldps~~l~~l~~~~~svIltSgTLsp~----~~f~~~Lg~~~~~~~~~~ 482 (601)
.++.++|. . + .+.+.|.++...+.+.++..+++|||||||+|+ +.|-. .+. ..++
T Consensus 290 ----~~~~~~~~---~-------~-~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~~--~~~----~~~g 348 (540)
T 2vl7_A 290 ----MKGDLYNC---N-------G-SLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYKI--VVN----ESYG 348 (540)
T ss_dssp ----SCCEEEEE---T-------T-EEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEEE--ECC----CC-C
T ss_pred ----hCCCEEEE---C-------C-eEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcCC--chh----heec
Confidence 13345553 1 1 466777776665544455556779999999993 33300 000 0010
Q ss_pred eeecCCceeeeeeecCCCCCcceeeeccCCChHHHHHHHHHHHHhhcccCCeEEEEecCHHHHHHHHHHHHhcchHHHHh
Q 007505 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (601)
Q Consensus 483 ~~~~~~~~~~~~i~~g~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~ 562 (601)
... .+ ....++|||++|+++ + +++++.|.+++..+|||+|||||||.+|+++++.|++
T Consensus 349 ----~~~---~~-----~~~~l~s~f~~r~~~-~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~-------- 406 (540)
T 2vl7_A 349 ----RGE---YY-----YCPNVTSELRKRNSN-I-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG-------- 406 (540)
T ss_dssp ----CCE---EE-----ECTTCCCCGGGHHHH-H-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--------
T ss_pred ----CCc---ce-----eccccCCCcccccCH-H-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--------
Confidence 000 11 124688999998764 5 8899999999999999999999999999999998852
Q ss_pred cCCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEEcC
Q 007505 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVAR 601 (601)
Q Consensus 563 ~~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV~R 601 (601)
+.+|+|+++ .++..++++|++ .++||||||+
T Consensus 407 --~~~~~q~~~-~~~~~~l~~f~~-----~~~il~~V~~ 437 (540)
T 2vl7_A 407 --IPVIEENKK-TRHEEVLELMKT-----GKYLVMLVMR 437 (540)
T ss_dssp --SCEEESTTT-CCHHHHHHHHHT-----SCCEEEEEC-
T ss_pred --CceEecCCC-CcHHHHHHHHhc-----CCeEEEEEec
Confidence 679998876 567889999986 3699999985
No 4
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.49 E-value=5.8e-14 Score=134.72 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++.+......+. +++|.++|.++..|+.++++.+.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCc-eEEEEECCHHHHHHHHHHHHHHh
Confidence 578778999998887654 5688999999999999999999887765544456 89999999999999999888753
No 5
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.47 E-value=1.8e-13 Score=133.06 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC-----CCCcEEEEEcccchhHHHHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~-----~~~~kvv~~t~T~~~~~q~~~e 86 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.+.
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~-~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP-ICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC-SEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC-EEEEEeCcHHHHHHHHHH
Confidence 578878999999887654 6789999999999999999999988766431 245 899999999999999998
Q ss_pred HHhhhh
Q 007505 87 LKLLHN 92 (601)
Q Consensus 87 l~~l~~ 92 (601)
++.+..
T Consensus 122 ~~~~~~ 127 (242)
T 3fe2_A 122 AAEYCR 127 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887643
No 6
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.47 E-value=9.7e-14 Score=131.28 Aligned_cols=75 Identities=16% Similarity=0.041 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++.+.
T Consensus 21 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI-QAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCe-eEEEEeCcHHHHHHHHHHHHHHH
Confidence 678888999998887654 5788999999999999999999887655443445 89999999999999999888763
No 7
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=132.91 Aligned_cols=74 Identities=20% Similarity=0.042 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC------CCCCcEEEEEcccchhHHHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTLA 85 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~------~~~~~kvv~~t~T~~~~~q~~~ 85 (601)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++...... ..+. +++|.++|.++..|+.+
T Consensus 38 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP-GMLVLTPTRELALHVEA 112 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC-SEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC-cEEEEeCCHHHHHHHHH
Confidence 467778999998886644 678999999999999999999988765431 1345 89999999999999999
Q ss_pred HHHhh
Q 007505 86 ELKLL 90 (601)
Q Consensus 86 el~~l 90 (601)
+++.+
T Consensus 113 ~~~~~ 117 (228)
T 3iuy_A 113 ECSKY 117 (228)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88875
No 8
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=133.56 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=64.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++......+.+. +++|.++|.++..|+.++++.+
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~-~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRL-FALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 3678888999999886654 6788999999999999999999988776654445 8999999999999999988876
Q ss_pred h
Q 007505 91 H 91 (601)
Q Consensus 91 ~ 91 (601)
.
T Consensus 135 ~ 135 (249)
T 3ber_A 135 G 135 (249)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.46 E-value=7.3e-14 Score=136.04 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC-CCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~-~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++....... .+. +++|.+||.++..|+.++++.+
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 578878999999886644 5788999999999999999999887765422 244 8999999999999999988876
Q ss_pred h
Q 007505 91 H 91 (601)
Q Consensus 91 ~ 91 (601)
.
T Consensus 122 ~ 122 (245)
T 3dkp_A 122 S 122 (245)
T ss_dssp T
T ss_pred h
Confidence 3
No 10
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.44 E-value=1.6e-13 Score=132.34 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+ .+++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++.+.
T Consensus 42 ~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEeCCHHHHHHHHHHHHHHh
Confidence 67887899999988764 45788999999999999999999887654433356 89999999999999999888753
No 11
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.44 E-value=1.3e-13 Score=131.81 Aligned_cols=76 Identities=16% Similarity=0.056 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++.+.
T Consensus 22 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEV-QAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 677778999999987655 5688999999999999999999887765443345 89999999999999999888764
Q ss_pred h
Q 007505 92 N 92 (601)
Q Consensus 92 ~ 92 (601)
.
T Consensus 97 ~ 97 (219)
T 1q0u_A 97 K 97 (219)
T ss_dssp T
T ss_pred h
Confidence 3
No 12
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.44 E-value=3.7e-13 Score=131.73 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=62.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC---------CCCcEEEEEcccchhHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---------ENPVKLIYCTRTVHEMEK 82 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~---------~~~~kvv~~t~T~~~~~q 82 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|++|++....... .+. +++|.++|.++..|
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQ 115 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC-SEEEECSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc-eEEEEECCHHHHHH
Confidence 567778999999887654 5788999999999999999999987765331 124 89999999999999
Q ss_pred HHHHHHhhh
Q 007505 83 TLAELKLLH 91 (601)
Q Consensus 83 ~~~el~~l~ 91 (601)
+.++++.+.
T Consensus 116 ~~~~~~~~~ 124 (253)
T 1wrb_A 116 ILSESQKFS 124 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888753
No 13
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.43 E-value=3.4e-13 Score=128.96 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++++.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE-EEEEEeCCHHHHHHHHHHHHHHH
Confidence 678878999999887655 4678999999999999999999887655433344 89999999999999999888764
No 14
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=130.26 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC----CCCCcEEEEEcccchhHHHHHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK----PENPVKLIYCTRTVHEMEKTLAEL 87 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~----~~~~~kvv~~t~T~~~~~q~~~el 87 (601)
++|..++|.|.+.+..+ .+++.+++.||||+|||++|+.|++...... ..+. +++|.+||.++..|+.+++
T Consensus 43 ~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL-GVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp TTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 56777899999888664 4678899999999999999999988776432 1245 8999999999999999988
Q ss_pred Hhh
Q 007505 88 KLL 90 (601)
Q Consensus 88 ~~l 90 (601)
+.+
T Consensus 118 ~~~ 120 (236)
T 2pl3_A 118 RKV 120 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 15
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.42 E-value=6.2e-13 Score=125.75 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC---CCCCcEEEEEcccchhHHHHHHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~---~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++...... ..+. +++|.++|.++..|+.+++.
T Consensus 19 ~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP-RALVLTPTRELALQVASELT 93 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCC-SEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC-cEEEEECCHHHHHHHHHHHH
Confidence 577778999999887654 578899999999999999999988765421 1245 89999999999999999888
Q ss_pred hh
Q 007505 89 LL 90 (601)
Q Consensus 89 ~l 90 (601)
.+
T Consensus 94 ~~ 95 (207)
T 2gxq_A 94 AV 95 (207)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 16
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.39 E-value=6.4e-13 Score=128.64 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.++|.++..|+.++++.+.
T Consensus 48 ~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKET-QALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEECcHHHHHHHHHHHHHHh
Confidence 578878999998887654 5678999999999999999999887654433355 89999999999999999888763
No 17
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=127.48 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC----CCCcEEEEEcccchhHHHHHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAEL 87 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~----~~~~kvv~~t~T~~~~~q~~~el 87 (601)
++|..+||.|.+++..+. +++.+++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.+++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~-~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGT-GVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 567778999999887765 4578999999999999999999987765421 245 8999999999999999988
Q ss_pred Hhhh
Q 007505 88 KLLH 91 (601)
Q Consensus 88 ~~l~ 91 (601)
+.+.
T Consensus 147 ~~~~ 150 (262)
T 3ly5_A 147 KELM 150 (262)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8763
No 18
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.34 E-value=1.4e-12 Score=136.06 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........++ +++|.++|.++..|+.+++..+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCC-CEEEEcCCHHHHHHHHHHHHHHh
Confidence 578778999998887655 4678999999999999999999887765544456 89999999999999999888753
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.32 E-value=5.5e-12 Score=131.97 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI-QALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCc-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 468878999999987665 5678999999999999999999887665433355 89999999999999999888753
No 20
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.32 E-value=4.2e-12 Score=134.38 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC-----CCCcEEEEEcccchhHHHHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~-----~~~~kvv~~t~T~~~~~q~~~e 86 (601)
++|..|+|.|.+.+..+ .+++.+++.||||+|||++|++|++......+ .+. +++|.++|..+..|+.++
T Consensus 74 ~g~~~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~-~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCC-SEEEECSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCc-cEEEEecCHHHHHHHHHH
Confidence 67888899999888664 46789999999999999999999988776542 134 899999999999999999
Q ss_pred HHhhh
Q 007505 87 LKLLH 91 (601)
Q Consensus 87 l~~l~ 91 (601)
++++.
T Consensus 149 ~~~~~ 153 (434)
T 2db3_A 149 ARKFA 153 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88763
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.32 E-value=3.5e-12 Score=133.00 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
++|..+||.|.+.+..+... .++++++.||||+|||++|+.|++........++ +++|.+||.++..|+.++++.+
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP-QAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc-cEEEECCCHHHHHHHHHHHHHH
Confidence 56777899999988766432 2388999999999999999999887655443456 8999999999999999988875
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.31 E-value=6.2e-12 Score=128.13 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=59.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++.. +. +++|.+||.++..|+.++++.+
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GM-KSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cC-CEEEEeCCHHHHHHHHHHHHHH
Confidence 4788888999999886654 67899999999999999999987642 45 8999999999999999988875
Q ss_pred h
Q 007505 91 H 91 (601)
Q Consensus 91 ~ 91 (601)
.
T Consensus 80 ~ 80 (337)
T 2z0m_A 80 G 80 (337)
T ss_dssp T
T ss_pred h
Confidence 3
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=132.02 Aligned_cols=75 Identities=23% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC------------------CCCcEEEEE
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP------------------ENPVKLIYC 73 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~------------------~~~~kvv~~ 73 (601)
.+|..++|.|.+.+.. +.+++++++.||||+|||++|++|++......+ .+. +++|.
T Consensus 33 ~~~~~~~~~Q~~~i~~----i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lil 107 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPI----IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYP-ISLVL 107 (417)
T ss_dssp HTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCC-SEEEE
T ss_pred CCCCCCCHHHHHHHHH----HccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCc-cEEEE
Confidence 4677789999998865 456889999999999999999999987755321 124 79999
Q ss_pred cccchhHHHHHHHHHhhh
Q 007505 74 TRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 74 t~T~~~~~q~~~el~~l~ 91 (601)
+||.++..|+.++++.+.
T Consensus 108 ~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFS 125 (417)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 999999999999888763
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.31 E-value=2.9e-12 Score=133.55 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........+. +++|.+||.++..|+.++++++.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCe-eEEEECCCHHHHHHHHHHHHHHH
Confidence 568878999999886654 5788999999999999999999887655443345 89999999999999999888764
Q ss_pred h
Q 007505 92 N 92 (601)
Q Consensus 92 ~ 92 (601)
.
T Consensus 101 ~ 101 (391)
T 1xti_A 101 K 101 (391)
T ss_dssp T
T ss_pred h
Confidence 3
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.30 E-value=3.3e-12 Score=131.71 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. .+++.+++.||||+|||++|+.|++.+.... .+. +++|.+||.++..|+.++++.+.
T Consensus 24 ~g~~~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~-~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGI-EAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp HTCCSCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSC-CEEEECSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCC-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 467778999999876653 4447999999999999999999988766543 245 89999999999999999888753
No 26
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=127.86 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhc--CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
++|..|+|.|.+.+..+. .+ +++++.||||+|||++|++|++........+. +++|.+||..+..|+.+.++.
T Consensus 110 ~g~~~pt~iQ~~ai~~il----~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~-~~lil~PtreLa~Q~~~~~~~ 184 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLML----AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQ 184 (300)
T ss_dssp TTCCSCCHHHHHHHHHHT----SSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH----cCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc-eEEEEcCcHHHHHHHHHHHHH
Confidence 568888999988875543 44 89999999999999999999988765544445 899999999999999988887
Q ss_pred hh
Q 007505 90 LH 91 (601)
Q Consensus 90 l~ 91 (601)
+.
T Consensus 185 l~ 186 (300)
T 3fmo_B 185 MG 186 (300)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 27
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.28 E-value=5.8e-12 Score=132.30 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........+. +++|.+||.++..|+.++++.+.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRET-QALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 678878999999887654 5788999999999999999999887654333356 89999999999999999888753
No 28
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.27 E-value=8e-12 Score=131.26 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=63.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++.+
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-QALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce-eEEEEeChHHHHHHHHHHHHHH
Confidence 3678888999998886654 5778999999999999999999887665443456 8999999999999999988875
Q ss_pred h
Q 007505 91 H 91 (601)
Q Consensus 91 ~ 91 (601)
.
T Consensus 132 ~ 132 (414)
T 3eiq_A 132 G 132 (414)
T ss_dssp G
T ss_pred h
Confidence 3
No 29
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=116.60 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC---CCCCcEEEEEcccchhHHH-HHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEK-TLAEL 87 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~---~~~~~kvv~~t~T~~~~~q-~~~el 87 (601)
+.++ +||.|.+.+..+. +++++++.||||+|||++++.+++...... ..+. +++|.++|.++.+| +.+++
T Consensus 30 ~~~~-l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~-~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQ-LRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCC-CCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCC-CEEEEESSHHHHHHHHHHTH
T ss_pred CCCC-chHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCC-cEEEEECHHHHHHHHHHHHH
Confidence 3454 5999999987765 467899999999999999999887654431 1245 89999999999999 54556
Q ss_pred Hhh
Q 007505 88 KLL 90 (601)
Q Consensus 88 ~~l 90 (601)
..+
T Consensus 104 ~~~ 106 (216)
T 3b6e_A 104 QPF 106 (216)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1e-11 Score=136.45 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=64.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC----CCCcEEEEEcccchhHHHHHHH
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~----~~~~kvv~~t~T~~~~~q~~~e 86 (601)
.++|+.+||.|.+.+..+... +++.+++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.++
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC-eEEEEcchHHHHHHHHHH
Confidence 478998899999988776521 4678999999999999999999988776542 124 899999999999999998
Q ss_pred HHhhh
Q 007505 87 LKLLH 91 (601)
Q Consensus 87 l~~l~ 91 (601)
+..+.
T Consensus 115 ~~~~~ 119 (579)
T 3sqw_A 115 VKKIH 119 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 31
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.23 E-value=1.3e-11 Score=129.63 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..+||.|.+.+..+... .++++++.||||+|||++|+.|++........+. +++|.+||.++..|+.+.++.+.
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC-CEEEECCCHHHHHHHHHHHHHHH
Confidence 67888899999988776532 2489999999999999999999887665444445 89999999999999988877753
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.22 E-value=1.7e-11 Score=134.39 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=64.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC----CCCcEEEEEcccchhHHHHHHH
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~----~~~~kvv~~t~T~~~~~q~~~e 86 (601)
.++|..+||.|.+.+..+.. .+++.+++.||||+|||++|++|++..+...+ .+. +++|.+||.++..|+.++
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe-eEEEEcCcHHHHHHHHHH
Confidence 36888889999998876551 14678999999999999999999998876542 124 899999999999999998
Q ss_pred HHhhh
Q 007505 87 LKLLH 91 (601)
Q Consensus 87 l~~l~ 91 (601)
++.+.
T Consensus 166 ~~~~~ 170 (563)
T 3i5x_A 166 VKKIH 170 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.22 E-value=3.4e-11 Score=131.44 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC--CCcEEEEEcccchhHHHHHHHHHhh
Q 007505 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~--~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
||++ ||.|.+.+..+. +++.+++.||||+|||++|+.|++......+. ++ +++|.+||.++..|+.++++++
T Consensus 2 ~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKP-RNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG-KVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCC-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence 6765 999999887654 67889999999999999999998887765432 45 8999999999999999998876
Q ss_pred h
Q 007505 91 H 91 (601)
Q Consensus 91 ~ 91 (601)
.
T Consensus 76 ~ 76 (555)
T 3tbk_A 76 F 76 (555)
T ss_dssp H
T ss_pred h
Confidence 4
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.19 E-value=4.3e-11 Score=125.87 Aligned_cols=71 Identities=23% Similarity=0.132 Sum_probs=60.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.|||++ +|.|.+.+..+. +++++++.||||+|||++|+.|++.... .++ +++|.+||.++..|+.++++.+
T Consensus 17 ~~~~~~-~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~-~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 17 KFGKDL-TGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHSSCC-CHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCCC-CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCC-EEEEEECCHHHHHHHHHHHHHH
Confidence 478865 899998887654 6779999999999999999998776552 256 8999999999999999998875
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.19 E-value=5.1e-11 Score=130.22 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC--CCcEEEEEcccchhHHHHHHHHHh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~--~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
.++++ ||.|.+.+..+. +++++++.||||+|||++|+.|++......+. ++ +++|.+||.++..|+.++++.
T Consensus 4 ~~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKA-RSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----C-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 45665 999999887664 56789999999999999999998877665432 45 899999999999999999887
Q ss_pred hh
Q 007505 90 LH 91 (601)
Q Consensus 90 l~ 91 (601)
+.
T Consensus 78 ~~ 79 (556)
T 4a2p_A 78 HF 79 (556)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.18 E-value=7.1e-11 Score=132.85 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=62.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC--CCcEEEEEcccchhHHHHHHHHH
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~--~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
.|+|..+||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.++|.++..|..++++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp TTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCC-CEEEECSSHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCC-eEEEEECCHHHHHHHHHHHH
Confidence 5788888999999987654 57889999999999999999998877665432 25 89999999999999999988
Q ss_pred hhh
Q 007505 89 LLH 91 (601)
Q Consensus 89 ~l~ 91 (601)
++.
T Consensus 83 ~~~ 85 (696)
T 2ykg_A 83 KYF 85 (696)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.16 E-value=1.4e-10 Score=129.75 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=66.4
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhc--CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
.+||+ ++|.|.+.+..+...+..+ .+.++.||||+|||++|+.|++..... +. +++|.+||..+..|..+++.
T Consensus 364 ~lpf~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~-qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 364 SLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF-QTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS-CEEEECSCHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC-eEEEEeCcHHHHHHHHHHHH
Confidence 58995 5999999999999988776 489999999999999999998876542 46 89999999999999999888
Q ss_pred hhh
Q 007505 89 LLH 91 (601)
Q Consensus 89 ~l~ 91 (601)
.+.
T Consensus 439 ~~~ 441 (780)
T 1gm5_A 439 ESF 441 (780)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.14 E-value=1.1e-10 Score=132.94 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC--CCcEEEEEcccchhHHHHHHHHHh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~--~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++......+. ++ +++|.+||.++..|+.+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp ----CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 336678999999887653 56889999999999999999998877765431 45 899999999999999999887
Q ss_pred hh
Q 007505 90 LH 91 (601)
Q Consensus 90 l~ 91 (601)
+.
T Consensus 319 ~~ 320 (797)
T 4a2q_A 319 HF 320 (797)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 39
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=129.27 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
++|..++|.|.+.+..+... .++++++.||||+|||++|++|++........++ +++|.+||.++..|+.+.++.+.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~-~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC-cEEEEeChHHHHHHHHHHHHHHH
Confidence 57888899999888766531 2489999999999999999999887655443344 89999999999999988777754
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.12 E-value=1.9e-10 Score=125.76 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=60.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++. .++ +++|.+||.++..|.++.++.+
T Consensus 39 ~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~------~~g-~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 39 VFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC------SDG-FTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp TSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT------SSS-EEEEECSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH------cCC-cEEEEeCHHHHHHHHHHHHHhc
Confidence 5899999999999887765 5788999999999999999999873 146 8999999999999999988764
No 41
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.11 E-value=1.5e-10 Score=125.06 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=59.7
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 10 ~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
-.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++.. ++ +++|.+||.++..|.++.+..
T Consensus 19 ~~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~~------~g-~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 19 ETFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALLL------NG-LTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp HTTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHS------SS-EEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHHh------CC-CEEEECChHHHHHHHHHHHHH
Confidence 35999999999998887655 67889999999999999999998742 35 899999999999999998776
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.08 E-value=1.6e-10 Score=123.67 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
++ +||.|.+.+..+.+ + .+++.+|||+|||++++.+++...... ++ +++|.+||.++..|+.+++.+.
T Consensus 8 ~~-l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~~--~~-~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQ-PRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTKY--GG-KVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HC-CCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHHS--CS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhcC--CC-eEEEEECCHHHHHHHHHHHHHH
Confidence 44 59999999877653 3 899999999999999999877765522 56 8999999999999999998875
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.08 E-value=1.9e-10 Score=132.78 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC--CCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~--~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
+..+||.|.+.+..+. +++.+++.||||+|||++|+.|++......+. ++ +++|.+||.++..|+.++++++.
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~-~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHHh
Confidence 5567999999887663 57889999999999999999998766554321 45 89999999999999999988764
No 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.06 E-value=4.2e-11 Score=129.29 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.+|..+||.|.+.+..+.+. .++++++.||||+|||++|+.|++........++ +++|.++|.++..|+.++++.+
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~-~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP-QAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc-eEEEEECcHHHHHHHHHHHHHh
Confidence 34555789998888765532 2489999999999999999999887655443355 8999999999999999988775
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=131.36 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC---CCCcEEEEEcccchhHHHH-HHHHH
Q 007505 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---ENPVKLIYCTRTVHEMEKT-LAELK 88 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~---~~~~kvv~~t~T~~~~~q~-~~el~ 88 (601)
+|+ +||.|.+.+..+. +++.+++.+|||+|||++|+.|++......+ .++ +++|.+||.++..|+ .++++
T Consensus 5 ~~~-l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~-~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp --C-CCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCC-CBCCEESCSHHHHHHHHHTHH
T ss_pred CCC-ccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCC-eEEEEECCHHHHHHHHHHHHH
Confidence 455 4999999887765 4788999999999999999999887654331 125 899999999999999 89888
Q ss_pred hhh
Q 007505 89 LLH 91 (601)
Q Consensus 89 ~l~ 91 (601)
.+.
T Consensus 79 ~~~ 81 (699)
T 4gl2_A 79 PFL 81 (699)
T ss_dssp HHH
T ss_pred HHc
Confidence 753
No 46
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.04 E-value=8.4e-10 Score=129.38 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=66.6
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHhhcC--cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHH
Q 007505 10 VYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (601)
Q Consensus 10 ~~fp~~~~r~~Q~~~~~~v~~~l~~~~--~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el 87 (601)
..|||++ +|.|.+.+..+.+.+..++ ..++.||||+|||++++.+++.... .++ +++|.+||..+..|..+++
T Consensus 598 ~~f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~-~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 598 DSFPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHK-QVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HTCCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTC-EEEEECSSHHHHHHHHHHH
T ss_pred HhCCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCC-eEEEEechHHHHHHHHHHH
Confidence 4699986 9999999999999998776 8999999999999999988766543 257 9999999999999999988
Q ss_pred Hhh
Q 007505 88 KLL 90 (601)
Q Consensus 88 ~~l 90 (601)
...
T Consensus 673 ~~~ 675 (1151)
T 2eyq_A 673 RDR 675 (1151)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 47
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.01 E-value=1.1e-09 Score=108.73 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.+||.|.+.+..+.+ ++..++.||||+|||++++.++....... +. +++|.++|.++.+|+.+++.+.
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CC-eEEEEECCHHHHHHHHHHHHHh
Confidence 359999999877654 35678899999999999988766655432 35 8999999999999999988764
No 48
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.97 E-value=1.6e-09 Score=104.41 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=52.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
.|+++ +||.|.+.+..+. +++.+++.+|||+|||+.++.++... +. +++|.++|.++..|+.+++..
T Consensus 89 ~~~~~-l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 89 DAEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCC-CCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CS-CEEEEESSHHHHHHHHHHHGG
T ss_pred cCCCC-cCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEeCCHHHHHHHHHHHHh
Confidence 34455 4999998887643 45569999999999999988765431 45 899999999999999887765
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.7e-09 Score=124.98 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=61.3
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 9 ~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
.-.|||+ ++|.|.+.+..+ .+++.+++.||||+|||++|+.|.+.... .+. +++|.+||.++..|..+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~---~g~-rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQ-RVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHH---TTC-EEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhc---cCC-eEEEECChHHHHHHHHHHHH
Confidence 3468998 599999988764 56789999999999999999988766553 256 99999999999999999888
Q ss_pred hh
Q 007505 89 LL 90 (601)
Q Consensus 89 ~l 90 (601)
..
T Consensus 151 ~~ 152 (1010)
T 2xgj_A 151 AE 152 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 50
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.95 E-value=1.5e-09 Score=125.27 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=61.1
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHH
Q 007505 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (601)
Q Consensus 8 ~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el 87 (601)
....|||+. +|.|.+.+.. +.+++.+++.||||+|||++|+.++..... . +. +++|.+||.++..|..+++
T Consensus 32 ~~~~~~f~l-~~~Q~~aI~~----il~g~~vlv~apTGsGKTlv~~~~i~~~~~-~--g~-~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 32 PARSWPFEL-DTFQKEAVYH----LEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-N--MT-KTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSCCCSSCC-CHHHHHHHHH----HHTTCEEEEECCTTSCSHHHHHHHHHHHHH-T--TC-EEEEEESCGGGHHHHHHHH
T ss_pred HHHhCCCCC-CHHHHHHHHH----HHcCCCEEEEECCCCcHHHHHHHHHHHHHh-c--CC-eEEEEeCCHHHHHHHHHHH
Confidence 445799986 9999987765 456789999999999999999988665543 2 46 8999999999999999988
Q ss_pred Hhh
Q 007505 88 KLL 90 (601)
Q Consensus 88 ~~l 90 (601)
...
T Consensus 103 ~~~ 105 (997)
T 4a4z_A 103 KET 105 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 763
No 51
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.94 E-value=1.7e-09 Score=116.95 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
+|++ ||.|.+.+..+.+ ++.+++.+|||+|||++++.++....... +. +++|.+||.++..|..+++.++
T Consensus 111 ~~~l-~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEP-HWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECC-CHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SS-EEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCC-CHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CC-eEEEEECcHHHHHHHHHHHHHh
Confidence 4564 9999999888664 46799999999999999998877655433 45 8999999999999999988764
No 52
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.93 E-value=1.1e-09 Score=123.34 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
++|..+||.|.+.+..+ +.+++++++.||||+|||+++..|++...... +. +++|.+||.++..|+.++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG-KAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS-EEEEECSSGGGHHHHHHHTGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC-EEEEEcCcHHHHHHHHHHHHHH
Confidence 68887899999888652 44588999999999999999999888665533 56 9999999999999999987654
No 53
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.92 E-value=2.9e-09 Score=124.11 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=59.4
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.+||+ ++|.|.+.+..+. +++.+++.||||+|||++|+.+++..+. .+. +++|.+||..+..|+.+.++.+
T Consensus 74 ~~gf~-pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~-~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCC-CCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCC-eEEEEechHHHHHHHHHHHHHh
Confidence 47887 4999998886654 5789999999999999999988766552 256 8999999999999999988874
No 54
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.1e-09 Score=125.24 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=63.0
Q ss_pred CeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHH
Q 007505 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 7 ~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~e 86 (601)
++...|||++ +|.|.+.+.. +.+++.+++.||||+|||++|+.|++.... .++ +++|.+||.++..|..++
T Consensus 176 ~~~~~~~f~l-tp~Q~~AI~~----i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~-rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 176 NEARTYPFTL-DPFQDTAISC----IDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQ-RVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp SCSSCCSSCC-CHHHHHHHHH----HTTTCCEEEECCSSSHHHHHHHHHHHHHHH---TTC-EEEEEESSHHHHHHHHHH
T ss_pred HHHHhCCCCC-CHHHHHHHHH----HHcCCCEEEECCCCCChHHHHHHHHHHHHh---cCC-eEEEEcCcHHHHHHHHHH
Confidence 3455689975 8999888765 467889999999999999999999876654 256 999999999999999998
Q ss_pred HHhh
Q 007505 87 LKLL 90 (601)
Q Consensus 87 l~~l 90 (601)
+...
T Consensus 247 l~~~ 250 (1108)
T 3l9o_A 247 LLAE 250 (1108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.90 E-value=2e-09 Score=115.04 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=55.3
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 10 ~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
..||++. ||.|.+.+..+. +++.+++.+|||+|||++|+.++... ++ +++|.+||.++..|+.+++..
T Consensus 88 ~~~~~~l-~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~-~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 88 FDAEISL-RDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCCCCB-CHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CS-CEEEEESSHHHHHHHHHHGGG
T ss_pred ccCCCCc-CHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEECCHHHHHHHHHHHHh
Confidence 3466764 999999887654 45679999999999999999876532 46 899999999999999998765
No 56
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.90 E-value=2.7e-09 Score=120.22 Aligned_cols=73 Identities=26% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
++|..++|.|.+.+..+ +.+++++++.||||+|||+++..+++...... +. +++|.+||.++..|..++++.+
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GG-KAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CS-EEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CC-eEEEEeCcHHHHHHHHHHHHHh
Confidence 68877899999888652 44688999999999999999999988765533 56 9999999999999999987543
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.86 E-value=2.3e-09 Score=120.46 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
++|..+||.|.+.+.. +.+++++++.||||+|||+++..|++..... +. +++|.+||.++..|..++++++
T Consensus 21 ~g~~~l~~~Q~~~i~~----i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~-~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEK----VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GG-KSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp C---CCCCCCHHHHHH----HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TC-CEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHH----HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CC-cEEEEeCcHHHHHHHHHHHHHH
Confidence 7887789999988877 4468899999999999999999988766542 46 8999999999999999988543
No 58
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.84 E-value=3.3e-09 Score=123.49 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=60.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.|+|. + |.|.+.+..+. +++++++.||||+|||+ |++|++...... +. +++|.+||..+..|+.+.++.+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~-~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK--GK-RCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SC-CEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CC-eEEEEeccHHHHHHHHHHHHHH
Confidence 47888 7 99998887755 67899999999999998 888888776543 56 8999999999999999988876
Q ss_pred h
Q 007505 91 H 91 (601)
Q Consensus 91 ~ 91 (601)
.
T Consensus 123 ~ 123 (1054)
T 1gku_B 123 A 123 (1054)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.83 E-value=8.4e-09 Score=113.50 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHhhc-CcEEEEccCCChhHHHHHHHHHHHHHhC------CCCCcEEEEEcccchhHHHHH
Q 007505 16 NIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTL 84 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~-~~~~~EapTGtGKTla~L~~~l~~~~~~------~~~~~kvv~~t~T~~~~~q~~ 84 (601)
.+||.|.+.+..+.+++.++ +.+++.+|||+|||++++..+....... ..++ +++|.++|.++.+|..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~-~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKP-RILFLADRNVLVDDPK 252 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCC-CEEEEEC---------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCC-eEEEEeCCHHHHHHHH
Confidence 36999999999999999876 4589999999999999775443333321 0356 8999999999999987
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.78 E-value=1.2e-08 Score=123.50 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=61.7
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC--------CCCCcEEEEEcccchhHHH
Q 007505 12 FP-YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--------PENPVKLIYCTRTVHEMEK 82 (601)
Q Consensus 12 fp-~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~--------~~~~~kvv~~t~T~~~~~q 82 (601)
|| |+.+.|.|.+.... ++..++++++.||||+|||+++.+|.+...... ..+. |++|.+||+++..|
T Consensus 74 f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~-k~lyiaP~kALa~e 149 (1724)
T 4f92_B 74 FEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF-KIIYIAPMRSLVQE 149 (1724)
T ss_dssp CTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSC-EEEEECSSHHHHHH
T ss_pred cCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCC-EEEEECCHHHHHHH
Confidence 65 88889999876543 567889999999999999999999988765432 1245 99999999999999
Q ss_pred HHHHHHhh
Q 007505 83 TLAELKLL 90 (601)
Q Consensus 83 ~~~el~~l 90 (601)
..+++.+.
T Consensus 150 ~~~~l~~~ 157 (1724)
T 4f92_B 150 MVGSFGKR 157 (1724)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 61
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.74 E-value=4.5e-08 Score=105.35 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.+||.|.+.+..+......+..+++-+|||+|||+..+..+. ........+ +++|.+|+ ++..|+.+|+.+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~-~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELT-PSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCS-SEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCC-CEEEEccH-HHHHHHHHHHHHH
Confidence 369999999988877777788899999999999998775433 333333345 78888884 6889999998875
No 62
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.70 E-value=4.1e-08 Score=112.91 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHHhhc----------CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHH
Q 007505 17 IYPEQYSYMLELKRALDAK----------GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~----------~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~e 86 (601)
+||.|.+.+..+.+.+.++ +.+++.+|||||||+++ ++++.++...+... +|+|.|+|..|..|+.++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~-rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFID-KVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCC-EEEEEECGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCc-eEEEEeCcHHHHHHHHHH
Confidence 6999999999999987643 57999999999999998 44445444333345 999999999999999988
Q ss_pred HHhh
Q 007505 87 LKLL 90 (601)
Q Consensus 87 l~~l 90 (601)
+..+
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7764
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.67 E-value=4.3e-08 Score=118.62 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
|+.+.|.|.+....++ ..++++++.||||+|||+++.+|.+......+ +. |++|.+||.++..|..+++..
T Consensus 924 f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~-kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EG-RCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp CSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TC-CEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CC-EEEEEcChHHHHHHHHHHHHH
Confidence 5557899988776553 56789999999999999999999887666553 45 899999999999999998875
No 64
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.56 E-value=1.7e-07 Score=103.41 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=56.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
.+| .|+|.|..-+-.+ .+|+ +.||+||+|||+++++|++..+. .++ .+.|.|+|.-|..|..+++..+.
T Consensus 80 lG~-~pt~VQ~~~ip~l----l~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~-~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVAL----HDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGK-GVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HSC-CCCHHHHHHHHHH----HTTS--EEECCTTSCHHHHHHHHHHHHHT---TSS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHH----hCCC--EEEccCCcHHHHHHHHHHHHHHH---cCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 457 4589998877544 3555 99999999999999999875443 256 89999999999999999888775
Q ss_pred hh
Q 007505 92 NY 93 (601)
Q Consensus 92 ~~ 93 (601)
++
T Consensus 149 ~~ 150 (844)
T 1tf5_A 149 EF 150 (844)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.52 E-value=1.1e-07 Score=110.07 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
+++ +||.|.+.+..+.. ..+..+++..|||+|||+.++..+....... ..+ +++|.+|| +++.|..+|+.+.
T Consensus 151 ~~~-LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~-rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 151 RTS-LIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAE-RVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SSC-CCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCC-CEEEECCT-TTHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCC-eEEEEeCH-HHHHHHHHHHHHH
Confidence 354 59999998877654 2245789999999999999987655444433 345 89999999 9999999998653
No 66
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.52 E-value=1.5e-07 Score=103.75 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhhhh
Q 007505 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~~~ 93 (601)
|+|.|..-+-.+ -+|+ ++||+||+|||+++++|++..+. .++ ++.|.|+|.-|..|..+++..+.++
T Consensus 75 p~~VQ~~~i~~l----l~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~-~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 75 HFDVQLLGGMVL----NERC--IAEMRTGEGKTLTATLPAYLNAL---TGK-GVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp CCHHHHHHHHHH----HSSE--EEECCTTSCHHHHHHHHHHHHHT---TSS-CCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CChHHHhhcccc----cCCe--eeeecCCchHHHHHHHHHHHHHH---cCC-cEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 489998776543 3555 99999999999999999875443 256 8999999999999999988877543
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.1e-07 Score=105.69 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
..||.|.+.+..+......+..+|+-.+||.|||+..+..+.......+..+ +++|.+| .+++.|+.+|+.+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~-~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG-PHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS-CEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC-CEEEEEC-chHHHHHHHHHHHH
Confidence 4699999999999989999999999999999999987765433322222345 6777778 67789999999875
No 68
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.48 E-value=2.9e-07 Score=101.38 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
.+|. |+|.|..-+-. +-+|+ |+||.||+|||+++++|++..+. .+. ++.|.|+|.-|..|..+.+..+.
T Consensus 76 lG~~-Pt~VQ~~~ip~----LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~-qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGMR-HFDVQLIGGAV----LHEGK--IAEMKTGEGKTLVATLAVALNAL---TGK-GVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCCC-CCHHHHHHHHH----HHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCS-CCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCC-CcHHHHhhccc----ccCCc--eeeccCCCchHHHHHHHHHHHHH---hCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 4564 48999887754 34555 99999999999999999865444 256 89999999999999998888775
Q ss_pred h
Q 007505 92 N 92 (601)
Q Consensus 92 ~ 92 (601)
+
T Consensus 145 ~ 145 (997)
T 2ipc_A 145 R 145 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.45 E-value=3.5e-07 Score=100.97 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
.++. |+|.|..-+-.+ .+|+ |+||+||+|||+++++|++..+. .++ ++.|.|+|.-|..|..+++..+.
T Consensus 108 lG~r-P~~VQ~~~ip~L----l~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~-~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQR-PFDVQVMGAAAL----HLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGN-GVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSCC-CCHHHHHHHHHH----HTTE--EEECCTTSCHHHHTHHHHHHHHT---TTS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHhH----hcCC--EEEecCCCccHHHHHHHHHHHHH---hCC-CeEEEeCCHHHHHHHHHHHHHHH
Confidence 3564 489998776543 3454 99999999999999999875554 256 89999999999999988888775
Q ss_pred hh
Q 007505 92 NY 93 (601)
Q Consensus 92 ~~ 93 (601)
++
T Consensus 177 ~~ 178 (922)
T 1nkt_A 177 RF 178 (922)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.36 E-value=1.5e-06 Score=96.20 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHHh-----hcCcEEEEccCCChhHHHHHHHHHHHHHhCCC----CCcEEEEEcccchhHHHHHHH
Q 007505 16 NIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLITSYVLSKPE----NPVKLIYCTRTVHEMEKTLAE 86 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~-----~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~----~~~kvv~~t~T~~~~~q~~~e 86 (601)
..||.|++.+..+.+++. ++..+|+-.+||+|||+..+..+.......+. .+ +++|.+++ +++.|+.+|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~-~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID-KVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCS-CEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCC-cEEEEecH-HHHHHHHHH
Confidence 469999999999998874 44578999999999999888765444443321 24 68888887 889999999
Q ss_pred HHhhh
Q 007505 87 LKLLH 91 (601)
Q Consensus 87 l~~l~ 91 (601)
+.+..
T Consensus 133 ~~~~~ 137 (644)
T 1z3i_X 133 VGKWL 137 (644)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98863
No 71
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.13 E-value=1.6e-05 Score=88.09 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
..-+.|++. |..++..+...+|.+|+|||||....- .+.++... +. +|.+||+|+.-.+++++.|..
T Consensus 189 ~LN~~Q~~A---V~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--~~-~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEA---VLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--GL-KVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHH---HHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHH---HHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--CC-eEEEEcCchHHHHHHHHHHHh
Confidence 346788764 555677778999999999999975443 34444444 56 999999999999998886543
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.95 E-value=2.7e-06 Score=90.20 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=48.9
Q ss_pred HHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 29 ~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
.+++.+++++++.||||+|||++|+.|++..+... +. +++|.+||..+..|+.+.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RL-RTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEECchHHHHHHHHHHhc
Confidence 56678889999999999999999999988766543 46 89999999999999887654
No 73
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.86 E-value=2.7e-06 Score=90.02 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
|..+.|.|. . +-.++.+++++++.||||+|||++|+.|++..+... +. +++|.+||..+..|+.++++
T Consensus 2 ~~q~~~iq~-~---i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 2 SAMGEPDYE-V---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RL-RTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCSCCCC-C---CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCcHH-H---HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CC-cEEEECCCHHHHHHHHHHhc
Confidence 344456663 2 334455667779999999999999999988766554 56 89999999999999987653
No 74
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.85 E-value=5.2e-06 Score=87.46 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
++.+++++++.||||+|||++|+.|++..+... +. +++|.+||..+..|..+.++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~-~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL-RTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC-eEEEEcchHHHHHHHHHHHhc
Confidence 356788999999999999999999988766544 45 899999999999999887653
No 75
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.82 E-value=1.5e-06 Score=95.94 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCCHHHH-----HHHHHHH--HHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 16 NIYPEQY-----SYMLELK--RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 16 ~~r~~Q~-----~~~~~v~--~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
.++|.|. +.+..+. +++.+++++++.||||+|||++|+.|++..+... +. +++|.+||..+..|+.+.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~-~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RL-RTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEccHHHHHHHHHHHHh
Confidence 4567787 4443333 3445789999999999999999999988765543 45 89999999999999888655
Q ss_pred h
Q 007505 89 L 89 (601)
Q Consensus 89 ~ 89 (601)
.
T Consensus 292 ~ 292 (673)
T 2wv9_A 292 G 292 (673)
T ss_dssp T
T ss_pred c
Confidence 3
No 76
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.81 E-value=0.00016 Score=79.59 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
...+.|.+.+..+. .+...+|.||+|||||..... .+..+... .+. +|+++++|+.-.+++.+.+..
T Consensus 180 ~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSC-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCC-eEEEEeCcHHHHHHHHHHHHh
Confidence 45789988876654 366899999999999985443 23333322 256 899999999999998886654
No 77
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.75 E-value=1.6e-05 Score=83.43 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=43.0
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
+++++++.||||+|||++|+.|++..+... +. +++|.+||..+.+|+.+.++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~-~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RL-RTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CC-CEEEECcHHHHHHHHHHHhC
Confidence 367899999999999999999988555543 56 89999999999999876543
No 78
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.63 E-value=2.2e-05 Score=85.98 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
+.|.|.. . ...+.+++++++.||||+|||++|++|++..+... +. +++|.+||..+..|+.+.++
T Consensus 172 ~lpiq~~---~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~-~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 172 GEPDYEV---D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RL-RTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCCCCCC---C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred CCCcccc---C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEcChHHHHHHHHHHhc
Confidence 3455544 1 56677889999999999999999999988776543 56 89999999999999987654
No 79
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.00015 Score=69.29 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC-CCcEEEEEcccchhHHHHHHHHHh
Q 007505 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-NPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~-~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
.++.|.+.+.. +.+++.+++.||||+|||.++..+.+......+. ...++++..+|..+..|+.+.+..
T Consensus 62 ~~~~q~~~i~~----i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEA----ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHH----HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 37888777755 4578999999999999999888777665443321 123899999999999998776554
No 80
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.52 E-value=0.00077 Score=75.84 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
...+.|.+.+..+. .+...+|.+|+|||||..... .+..+... .+. +|+++++|+.-.+++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSS-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCC-cEEEEcCcHHHHHHHHHHHHH
Confidence 34688988776553 356899999999999985442 33333332 256 899999999999888876654
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.35 E-value=0.00023 Score=77.18 Aligned_cols=67 Identities=22% Similarity=0.133 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhhhhh
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~~~~ 94 (601)
|+.|. +..+ +|.+|+ |+|..||.|||+++.+|+...|.. |+ .|-|.|+|.-|..|..+.+..+-.++
T Consensus 77 ~dvQl--igg~--~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~-~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 77 FDVQV--MGGI--ALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GK-GVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CHHHH--HHHH--HHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SS-CEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHH--HHHH--HHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CC-ceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 56664 3333 345665 899999999999999998766652 56 89999999999999988888776553
No 82
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.94 E-value=0.0026 Score=67.07 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcC-cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~-~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~ 83 (601)
.+|....+.|++.+..+...+.+++ +++|.||.|||||... ...+.++.... .. +|+++|+|+.....+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~-~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ET-GIILAAPTHAAKKIL 90 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CC-CEEEEESSHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-Cc-eEEEecCcHHHHHHH
Confidence 4577778999999999999988876 9999999999999643 33445555442 24 799999998765443
No 83
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.71 E-value=0.00099 Score=73.36 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=47.0
Q ss_pred eCCCCCCCHHHHHHHHHH---------HHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHH
Q 007505 11 YFPYDNIYPEQYSYMLEL---------KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEME 81 (601)
Q Consensus 11 ~fp~~~~r~~Q~~~~~~v---------~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~ 81 (601)
.|||.. .+.|..-+.++ .+++ +++.+++.||||+|||+..| ..+... + +.+|++||..+..
T Consensus 124 ~fp~~e-~~d~l~~i~dl~~p~~~~p~ar~l-~rk~vlv~apTGSGKT~~al----~~l~~~---~-~gl~l~PtR~LA~ 193 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLRIPPNWYPDARAM-QRKIIFHSGPTNSGKTYHAI----QKYFSA---K-SGVYCGPLKLLAH 193 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCCCGGGGCHHHHTS-CCEEEEEECCTTSSHHHHHH----HHHHHS---S-SEEEEESSHHHHH
T ss_pred hCCCcC-CHHHHHHHhhccChhhhCHHHHhc-CCCEEEEEcCCCCCHHHHHH----HHHHhc---C-CeEEEeCHHHHHH
Confidence 477655 46665544332 2222 45689999999999998333 333332 3 5689999999999
Q ss_pred HHHHHHHh
Q 007505 82 KTLAELKL 89 (601)
Q Consensus 82 q~~~el~~ 89 (601)
|+.+.+..
T Consensus 194 Qi~~~l~~ 201 (677)
T 3rc3_A 194 EIFEKSNA 201 (677)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 84
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.70 E-value=0.00079 Score=73.51 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 28 v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
+..++.+++.+++.||||+|||++++.|.+. .+. +++|.++|..+..|+.+.+..
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~-~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY-KVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC-CEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC-eEEEEcchHHHHHHHHHHHHH
Confidence 3445567788999999999999999987653 245 899999999999998775544
No 85
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.55 E-value=0.0036 Score=70.32 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=44.0
Q ss_pred HHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCC--CCcEEEEEcccchhHHHHHHHHHh
Q 007505 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 27 ~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~--~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
.+..++.+++++++.||||+|||. ++|.+........ +. +++|.++|..+..|+.+.+..
T Consensus 101 ~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~-~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 101 EFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENT-QVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCc-eEEecCchHHHHHHHHHHHHH
Confidence 445567788899999999999999 5665543322211 45 799999999999888775543
No 86
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.40 E-value=0.0049 Score=67.36 Aligned_cols=67 Identities=16% Similarity=0.038 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhH--HHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKT--la~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
-+.|++.+..+. .++.+++.+|+||||| ++++++.+.-.... .+. +|+++++|.....|+-+.+...
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~-~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERC-RIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCC-CEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCC-eEEEEeCChhHHHHHHHHHHHH
Confidence 367887776543 5789999999999999 77777665422111 245 8999999999998887765543
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.016 Score=65.21 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~ 89 (601)
...+.|.+.+..+. .+...+|.||+|||||..... .+.++... .+. +|+++++|+.-.+++.+.|..
T Consensus 360 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~-~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKD-RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHH-HHHHHHHH-HCC-CEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHH-HHHHHHhC-CCC-eEEEEcCcHHHHHHHHHHHHh
Confidence 34689998776653 366899999999999975433 22332221 146 899999999999998886654
No 88
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.59 E-value=0.029 Score=61.86 Aligned_cols=70 Identities=21% Similarity=0.105 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcC-cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 13 PYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~~-~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
||+ |++.|.+.+..+.+.+..+. ..++.+.||+|||+.+. .+.... ++ +++|.|++..+..|+.+||+.+
T Consensus 6 ~~~-~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a--~~~~~~----~~-~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 6 GPS-PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA--KVIEAL----GR-PALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp SCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH--HHHHHH----TC-CEEEEESSHHHHHHHHHHHHHH
T ss_pred CCC-CCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH--HHHHHh----CC-CEEEEecCHHHHHHHHHHHHHH
Confidence 564 58999999999999998875 56788999999998554 222211 35 7999999999999999999986
No 89
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.74 E-value=0.076 Score=58.48 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=59.1
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHhhcC-cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHH
Q 007505 9 TVYFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (601)
Q Consensus 9 ~~~fp~~~~r~~Q~~~~~~v~~~l~~~~-~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el 87 (601)
.+.=||+| +..|.+.+..+.+.+.++. ..++-+.||+|||+.. +.+.... ++ +++|.|++..+..|+.+||
T Consensus 6 ~~~~~~~p-~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~--a~~~~~~----~~-~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 6 ELVSKYQP-QGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV--SNLIKEV----NK-PTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCCSCCC-CTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH--HHHHHHH----CC-CEEEECSSHHHHHHHHHHH
T ss_pred eeecCCCC-CCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH--HHHHHHh----CC-CEEEEECCHHHHHHHHHHH
Confidence 44568876 8999999999999998875 5778899999999843 3332221 35 7999999999999999999
Q ss_pred Hhh
Q 007505 88 KLL 90 (601)
Q Consensus 88 ~~l 90 (601)
+.+
T Consensus 78 ~~~ 80 (661)
T 2d7d_A 78 KEF 80 (661)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 90
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.72 E-value=0.056 Score=59.50 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC-C-CCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~-~-~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
..-+.|++.+. ..+++++|.||.|||||...+.- +.+.... + ... +|++.|.|+.....+-+.+..+
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~r-i~~l~~~~~~~~~-~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHR-IAWLMSVENCSPY-SIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHH-HHHHHHTSCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHH-HHHHHHhCCCChh-hEEEEeccHHHHHHHHHHHHHH
Confidence 35688988885 24678999999999999876653 3444432 1 124 8999999999988887776654
No 91
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.20 E-value=0.1 Score=56.31 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHH
Q 007505 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~ 85 (601)
++. ..+.|++.+..+. +++++++.+|.|||||..... .+..+... +. +|+++++|......+-+
T Consensus 187 ~~~-L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~-l~~~l~~~--g~-~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKA-VADLAESL--GL-EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTT-CCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHH-HHHHHHhc--CC-eEEEecCcHHHHHHhHh
Confidence 443 3689988776654 568999999999999964322 22333333 56 89999999887765543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.89 E-value=0.15 Score=46.68 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhc------CcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDAK------GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~------~~~~~EapTGtGKTla~ 52 (601)
+.|.+++..+.+.+... .++++.+|+|||||...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 47777777777777765 78999999999999843
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.18 E-value=0.1 Score=46.88 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHh-----hcCcEEEEccCCChhHHHH
Q 007505 18 YPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~-----~~~~~~~EapTGtGKTla~ 52 (601)
.+.|.+....+.+.+. .+..+++-+|+|+|||.-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4678888877776663 4678999999999999733
No 94
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.78 E-value=0.09 Score=45.43 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEccCCChhHHH
Q 007505 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 22 ~~~~~~v~~~l~~~~~~~~EapTGtGKTla 51 (601)
.++.+.+..+...+.++++.+|+|||||..
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 334444444445677999999999999973
No 95
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.73 E-value=0.12 Score=44.62 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 23 SYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 23 ~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
++.+.+..+...+.++++.+|+|||||.
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHH
Confidence 3444444445567899999999999996
No 96
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.70 E-value=0.39 Score=48.78 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
.||.. .|.|+.++..+. .....+++.|-+.|||.....-++.++...+ +. +|+++.+|..|...+++.++.+.
T Consensus 160 ~p~~L-~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~-~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQL-RDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCC-CHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CC-eEEEEeCCHHHHHHHHHHHHHHH
Confidence 46765 899999987663 4567999999999999866554444444432 45 89999999999888887776653
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.55 E-value=0.22 Score=49.10 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhh-----cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA-----KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----~~~~~~EapTGtGKTla~ 52 (601)
+.+.++...+.+.+.+ +.++++-+|||||||...
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 131 ASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 3566666666666665 578999999999999843
No 98
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.39 E-value=0.4 Score=51.99 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhhh
Q 007505 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l~ 91 (601)
.||.. +|.|+.++..+ ......++++|-|+|||.....-++.++...+ +. +|+++.+|..|...++++++.+.
T Consensus 160 ~~~~l-~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~-~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQL-RDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCC-CHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcC-CHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CC-eEEEEECCHHHHHHHHHHHHHHH
Confidence 56765 89999998876 34567999999999999866544444444443 45 89999999999999888777653
No 99
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.36 E-value=0.18 Score=55.80 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC-CCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~-~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
..|.|++.+.. .+++++|.||.|||||.....-+.......+ ... +|++.|-|+.....+-+.+...
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~-~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR-HIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 36889888754 3678999999999999976653333232211 234 8999999998887776666543
No 100
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.27 E-value=0.068 Score=53.34 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~ 52 (601)
..+|.+.+..+..++..+.++++.+|+|||||...
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 45788889999999999999999999999999733
No 101
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.13 E-value=0.077 Score=56.12 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
.-+|.+.++.+..++..+.++++++|+|||||.
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHH
Confidence 357888899999999999999999999999998
No 102
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.67 E-value=0.35 Score=53.91 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhC-C-CCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~-~-~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
...|.|++.+.. .+++++|.||.|||||.....- ++|+... + ... +|++.|-|+.....+-+.+..+
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~~~~p~-~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEKHVAPW-NILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHH-HHHHHHTTCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 356899887753 4678999999999999876643 3444432 1 124 8999999998777766655543
No 103
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.81 E-value=0.19 Score=50.92 Aligned_cols=34 Identities=35% Similarity=0.287 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHh-----------------hcCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALD-----------------AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~-----------------~~~~~~~EapTGtGKTla~ 52 (601)
-+|.+.++.+..++. ...++++.+|+|||||...
T Consensus 18 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 18 IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence 356777777777773 3468999999999999843
No 104
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.69 E-value=0.2 Score=49.11 Aligned_cols=34 Identities=29% Similarity=0.197 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhh----------------cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~----------------~~~~~~EapTGtGKTla~ 52 (601)
.+|.+.+..+..++.. ..++++.+|+|||||...
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHH
Confidence 4666777777776654 468999999999999743
No 105
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.29 E-value=0.38 Score=47.99 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHhhcC--c-EEEEccCCChhHHHHH
Q 007505 17 IYPEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~--~-~~~EapTGtGKTla~L 53 (601)
.||.|.+....+..++.+++ | +++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 47999999999999999875 3 8999999999998555
No 106
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.13 E-value=0.63 Score=44.48 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEccCCChhHHH
Q 007505 20 EQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla 51 (601)
.-.++.+.+..+...+.++++.+|+|||||..
T Consensus 14 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 33344444444455678999999999999973
No 107
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.01 E-value=0.51 Score=55.92 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCC----CCCcEEEEEcccchhHHHHHHHHH
Q 007505 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~----~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
..+.|.+.+.. .+++++|.|+.|||||.+++-- +.+..... ... +|++.|-|++....+-+.+.
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~r-i~~ll~~~~~~~~~~-~il~~Tft~~aa~e~~~ri~ 78 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVER-MIRKITAEENPIDVD-RLLVVTFTNASAAEMKHRIA 78 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHH-HHHHHSCSSSCCCGG-GEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHH-HHHHHhcCCCCCCcc-ceEEEeccHHHHHHHHHHHH
Confidence 47899888754 4779999999999999877653 33443331 234 89999999887766655444
No 108
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.95 E-value=0.27 Score=43.94 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhc--CcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTla~ 52 (601)
.++.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 45666677777777654 67999999999999744
No 109
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.44 E-value=0.27 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhcC---cEEEEccCCChhHHH
Q 007505 19 PEQYSYMLELKRALDAKG---HCLLEMPTGTGKTIA 51 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~---~~~~EapTGtGKTla 51 (601)
-+|.+.+..+...+..+. .+++.+|+|+|||..
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 356777778888888775 689999999999973
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.41 E-value=0.36 Score=47.66 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=24.9
Q ss_pred CHHHHHHHH-HHHHHHhhc--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYML-ELKRALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~-~v~~~l~~~--~~~~~EapTGtGKTla~L 53 (601)
|..|.+-+. .+..++..+ .++++-+|+|||||...-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 445544444 556666554 579999999999998544
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.19 E-value=0.32 Score=44.66 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhc--CcEEEEccCCChhHHH
Q 007505 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIA 51 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTla 51 (601)
.+|.+.+..+.+.+..+ .++++.+|+|||||..
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 35667777888888776 3699999999999973
No 112
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.03 E-value=0.22 Score=48.97 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhc-----------CcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-----------~~~~~EapTGtGKTla~L 53 (601)
.+|...+..+..++... .++++.+|+|||||...-
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHH
Confidence 57777888888777764 479999999999997443
No 113
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.84 E-value=0.29 Score=48.28 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhcC--cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
.+|.+.+..+...+..+. ++++.+|+|||||...-
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 578888888888888875 79999999999998544
No 114
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.84 E-value=0.37 Score=42.82 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhh--cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~~EapTGtGKTla~ 52 (601)
.+|.+.+..+.+.+.. ..++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 4566667777777765 458999999999999743
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.82 E-value=0.44 Score=44.42 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.0
Q ss_pred hhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
..+...++.+|+|+|||.+.|--+..++.. +. +|+|.++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~-kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DV-KYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC-EEEEEEecc
Confidence 456788999999999999888765555442 45 777775543
No 116
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.92 E-value=6.1 Score=42.39 Aligned_cols=71 Identities=6% Similarity=0.068 Sum_probs=46.8
Q ss_pred HHHHHHHhhc--ccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeE
Q 007505 520 YGKLLVEMVS--IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAV 595 (601)
Q Consensus 520 l~~~i~~~~~--~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gai 595 (601)
....+...+. ..++.++||++|....+.+++.+++ .+.....+..-+.+ ..++..++++|++ |+..|
T Consensus 274 ~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~-----~~~~~~~v~~~hg~~~~~~R~~~~~~F~~----g~~~v 344 (579)
T 3sqw_A 274 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKN-----EFKKDLPILEFHGKITQNKRTSLVKRFKK----DESGI 344 (579)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHH-----HHTTTSCEEEESTTSCHHHHHHHHHHHHH----CSSEE
T ss_pred HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHH-----hhcCCCcEEEecCCCCHHHHHHHHHHhhc----CCCeE
Confidence 3344444333 3356899999999999999998875 22223344444443 3456778999987 46678
Q ss_pred EEEE
Q 007505 596 FFSV 599 (601)
Q Consensus 596 LfaV 599 (601)
|+|+
T Consensus 345 LVaT 348 (579)
T 3sqw_A 345 LVCT 348 (579)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8875
No 117
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.23 E-value=1.7 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhh--cCcEEEEccCCChhHHHHH
Q 007505 20 EQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~--~~~~~~EapTGtGKTla~L 53 (601)
.+.+....+...+.. +.++++.+|+|||||...-
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 346666677766664 5689999999999998443
No 118
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.14 E-value=0.4 Score=47.78 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhc-------CcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-------~~~~~EapTGtGKTla~L 53 (601)
-+|...+..+...+... .++++.+|+|||||...-
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 46667777777666542 489999999999998443
No 119
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.03 E-value=4.7 Score=40.43 Aligned_cols=58 Identities=9% Similarity=0.061 Sum_probs=40.9
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+++.+.+.| .....+-++ ...++..++++|++ |+..||+|+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T 307 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQN-------FPAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT 307 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHT----TCCSEEEES
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCC-------CcEEEEeCCCCHHHHHHHHHHHhc----CCCcEEEEC
Confidence 45789999999999999999997642 233334222 23456778999986 456777764
No 120
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.97 E-value=0.58 Score=46.68 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhcCc--EEEEccCCChhHHHHHH
Q 007505 20 EQYSYMLELKRALDAKGH--CLLEMPTGTGKTIALLS 54 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~~--~~~EapTGtGKTla~L~ 54 (601)
+|.+.+..+...+.+++. +++.+|+|||||....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 588888899999998865 99999999999975553
No 121
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.63 E-value=0.33 Score=48.49 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--hcCcEEEEccCCChhHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALD--AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~--~~~~~~~EapTGtGKTla~ 52 (601)
++|+. -.+|.++...+..+.. ...++++.+|+|||||...
T Consensus 21 ~~f~~-i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 21 FPFSA-IVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCGGG-SCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCchh-ccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 44554 2566666655544443 3568999999999999733
No 122
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.41 E-value=0.56 Score=46.05 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEccCCChhHHH
Q 007505 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 22 ~~~~~~v~~~l~~~~~~~~EapTGtGKTla 51 (601)
.++...+..+...+.++++.+|||||||..
T Consensus 12 ~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 12 QHLLNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 334444444444567999999999999973
No 123
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.08 E-value=3.7 Score=40.74 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHhhcccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 522 ~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
+.+.+++...++.+|||++|....+.+++.+++.| .+...+-++ +..++..+++.|++ |+..||+|+
T Consensus 228 ~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T 295 (367)
T 1hv8_A 228 EALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIG-------FKAGAIHGDLSQSQREKVIRLFKQ----KKIRILIAT 295 (367)
T ss_dssp HHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTT-------CCEEEECSSSCHHHHHHHHHHHHT----TSSSEEEEC
T ss_pred HHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcC-------CCeEEeeCCCCHHHHHHHHHHHHc----CCCeEEEEC
Confidence 34455556667889999999999999999987542 233333222 33456778999985 456788775
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.82 E-value=0.32 Score=48.70 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhc--CcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTla~L 53 (601)
-+|.+.++.+..++..+ .++++.+|+|||||...-
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 46777888888888887 679999999999997543
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.47 E-value=0.37 Score=46.61 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh---------------hcCcEEEEccCCChhHHHH
Q 007505 12 FPYDNIYPEQYSYMLELKRALD---------------AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 12 fp~~~~r~~Q~~~~~~v~~~l~---------------~~~~~~~EapTGtGKTla~ 52 (601)
+.|+. -.++.+.++.+.+.+. ....+++.+|+|||||...
T Consensus 14 ~~~~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYED-IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGG-SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHH-hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 33444 2455555555555542 3457999999999999743
No 126
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=84.03 E-value=5.9 Score=39.63 Aligned_cols=67 Identities=16% Similarity=0.393 Sum_probs=44.6
Q ss_pred HHHHHhhcc-cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 522 KLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 522 ~~i~~~~~~-~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
..+..+... ..+.+|||++|....+.+++.++..| ....++-+. ...++..++++|++ |+..||+|+
T Consensus 232 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T 300 (395)
T 3pey_A 232 DVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEG-------HEVSILHGDLQTQERDRLIDDFRE----GRSKVLITT 300 (395)
T ss_dssp HHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHT----TSCCEEEEC
T ss_pred HHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-------CcEEEeCCCCCHHHHHHHHHHHHC----CCCCEEEEC
Confidence 344444444 34789999999999999999997642 223333222 33456778999986 456687775
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.92 E-value=1.5 Score=42.82 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
.++++.+|+|||||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999998544
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.88 E-value=0.51 Score=45.95 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.3
Q ss_pred cCcEEEEccCCChhHHHH
Q 007505 35 KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~ 52 (601)
...+++.+|+|||||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999843
No 129
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.61 E-value=1.3 Score=44.53 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhcC----cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAKG----HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~----~~~~EapTGtGKTla~L 53 (601)
+.+++.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 444444555667776653 69999999999998544
No 130
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.39 E-value=6.9 Score=42.16 Aligned_cols=66 Identities=8% Similarity=0.075 Sum_probs=44.1
Q ss_pred HHHHHhhcc--cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEE
Q 007505 522 KLLVEMVSI--VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFF 597 (601)
Q Consensus 522 ~~i~~~~~~--~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLf 597 (601)
..|.+++.. .++.++||++|....+.+++.++..| .....+ +.+ ..++..+++.|+. |+..||+
T Consensus 255 ~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g-------~~~~~~-h~~l~~~~R~~~~~~F~~----g~~~VlV 322 (591)
T 2v1x_A 255 EDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG-------IHAGAY-HANLEPEDKTTVHRKWSA----NEIQVVV 322 (591)
T ss_dssp HHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEE-CTTSCHHHHHHHHHHHHT----TSSSEEE
T ss_pred HHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-------CCEEEe-cCCCCHHHHHHHHHHHHc----CCCeEEE
Confidence 444444433 35689999999999999999997643 122333 332 3456778999986 4567777
Q ss_pred EE
Q 007505 598 SV 599 (601)
Q Consensus 598 aV 599 (601)
|+
T Consensus 323 AT 324 (591)
T 2v1x_A 323 AT 324 (591)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 131
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.21 E-value=2.2 Score=41.99 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=32.8
Q ss_pred eeCCCCCCC--HHHHHHHHHHHHHHhhc----CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 10 VYFPYDNIY--PEQYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 10 ~~fp~~~~r--~~Q~~~~~~v~~~l~~~----~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
..+.|+... +.+......+...+... .++++.+|+|||||...- +++..... .+. ++++.+.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~--~i~~~~~~-~~~-~~~~i~~ 73 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQ--AAGNEAKK-RGY-RVIYSSA 73 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHH--HHHHHHHH-TTC-CEEEEEH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHH--HHHHHHHH-CCC-EEEEEEH
Confidence 345555433 23333333444444432 489999999999997433 23222111 134 6766654
No 132
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.99 E-value=0.72 Score=43.35 Aligned_cols=43 Identities=23% Similarity=0.137 Sum_probs=27.9
Q ss_pred HhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
|..|...++.|++|+|||.-.+--+...+... ++ +++|.|-..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~-~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE-PGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC-CEEEEESSS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC-CceeecccC
Confidence 44567899999999999986554333333332 45 676665443
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.66 E-value=0.61 Score=48.52 Aligned_cols=36 Identities=36% Similarity=0.395 Sum_probs=29.5
Q ss_pred CHHHHHHH---HHHHHHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYM---LELKRALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~---~~v~~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
.-+|...+ ..+..++..+. ++++.+|+|||||...-
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 45788888 78888888886 49999999999998443
No 134
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=82.34 E-value=0.79 Score=46.41 Aligned_cols=19 Identities=47% Similarity=0.620 Sum_probs=15.5
Q ss_pred cCcEEEEccCCChhHHHHH
Q 007505 35 KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L 53 (601)
..++++.+|+|||||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3579999999999997433
No 135
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.15 E-value=12 Score=39.78 Aligned_cols=70 Identities=4% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHHhhc--ccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEE
Q 007505 521 GKLLVEMVS--IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVF 596 (601)
Q Consensus 521 ~~~i~~~~~--~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiL 596 (601)
...+...+. ..++.++||++|....+.+++.+.+. +.....+..-+.+ ..++..+++.|++ |+..||
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~v~~~h~~~~~~~R~~~~~~f~~----g~~~vL 396 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE-----FKKDLPILEFHGKITQNKRTSLVKRFKK----DESGIL 396 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHH-----HTTTSCEEEESTTSCHHHHHHHHHHHHH----CSSEEE
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHh-----ccCCceEEEecCCCCHHHHHHHHHHHhc----CCCCEE
Confidence 344444333 34568999999999999999988752 2223344444443 3456778999987 466788
Q ss_pred EEE
Q 007505 597 FSV 599 (601)
Q Consensus 597 faV 599 (601)
+|+
T Consensus 397 vaT 399 (563)
T 3i5x_A 397 VCT 399 (563)
T ss_dssp EEC
T ss_pred EEc
Confidence 875
No 136
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.15 E-value=1.3 Score=45.17 Aligned_cols=35 Identities=26% Similarity=0.163 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHh--------------hcCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~--------------~~~~~~~EapTGtGKTla~L 53 (601)
-+|...++.+.+.+. ...++++.+|+|||||...-
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 567777777776662 13689999999999998443
No 137
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.14 E-value=1.5 Score=48.95 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcC-----------cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAKG-----------HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~-----------~~~~EapTGtGKTla~L 53 (601)
.+|.+.+..+.+++.... ++++.+|||||||...-
T Consensus 494 iGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR 539 (758)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH
Confidence 468888888888887532 59999999999998443
No 138
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.04 E-value=1 Score=45.26 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhcC---cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAKG---HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~---~~~~EapTGtGKTla~L 53 (601)
-+|.+.+..+..++..++ .+++.+|+|||||...-
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHH
Confidence 568888888888888775 37999999999997443
No 139
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.84 E-value=7.6 Score=39.29 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 532 ~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
++.+|||++|....+.+++.+++.| .+...+-+. ...++..++++|++ |+..||+|+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlvaT 333 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRS----GKSPILVAT 333 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHH----TSSCEEEEC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCC-------CCeeEecCCCCHHHHHHHHHHHHc----CCCCEEEEC
Confidence 4679999999999999999987642 223333222 23356778999986 456788775
No 140
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=81.83 E-value=0.7 Score=45.53 Aligned_cols=35 Identities=34% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhh-------cCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDA-------KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-------~~~~~~EapTGtGKTla~L 53 (601)
-+|...+..+...+.. ..++++.+|+|||||...-
T Consensus 15 ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 3455555555555541 2689999999999998443
No 141
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.58 E-value=0.72 Score=48.37 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhh--cCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~~EapTGtGKTla~L 53 (601)
-+|.+.+..+...+.. +.++++.+|+|||||...-
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4677777888888854 4689999999999998544
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.45 E-value=1.3 Score=41.99 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhh-----------cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----------~~~~~~EapTGtGKTla~ 52 (601)
+.+++.+..+.+.+.. ...+++.+|+|||||...
T Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 12 HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 4455555555544432 246899999999999743
No 143
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=81.45 E-value=0.69 Score=45.31 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhcC--cEEEEccCCChhHHHHH
Q 007505 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
+|.+.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 57888888888887765 79999999999997544
No 144
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.09 E-value=1.8 Score=42.02 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=16.3
Q ss_pred cEEEEccCCChhHHHHHHHHHHHH
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYV 60 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~ 60 (601)
.+++.+|+|||||. |+-+++..
T Consensus 38 ~lLl~GppGtGKT~--la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSF--QCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHH
Confidence 58889999999998 43345433
No 145
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.03 E-value=9.2 Score=40.46 Aligned_cols=56 Identities=5% Similarity=0.026 Sum_probs=39.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 532 ~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
++.++||++|....+.+++.+++.| ..+..=+.+ ..++..+++.|++ |+..||+|+
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~g--------~~~~~~h~~l~~~~R~~~~~~f~~----g~~~vlVaT 293 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSKG--------ISAAAYHAGLENNVRADVQEKFQR----DDLQIVVAT 293 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTT--------CCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCC--------CCEEEecCCCCHHHHHHHHHHHHc----CCCeEEEEe
Confidence 4579999999999999999997643 223333332 3456778999986 356677764
No 146
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.56 E-value=3.7 Score=40.23 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhcC---cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 19 PEQYSYMLELKRALDAKG---HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~---~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
-+|.+.+..+...+..+. .+++.+|+|||||...-. + +... +. +++....+.
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~--l--a~~l--~~-~~~~i~~~~ 83 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKA--L--CHDV--NA-DMMFVNGSD 83 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHH--H--HHHT--TE-EEEEEETTT
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHH--H--HHHh--CC-CEEEEcccc
Confidence 477888888888888764 356777799999985542 3 2322 34 677666544
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.37 E-value=1 Score=44.10 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.1
Q ss_pred cCcEEEEccCCChhHHHH
Q 007505 35 KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~ 52 (601)
+..+++.+|+|||||...
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 457999999999999843
No 148
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.14 E-value=1.4 Score=41.70 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhHHH
Q 007505 36 GHCLLEMPTGTGKTIA 51 (601)
Q Consensus 36 ~~~~~EapTGtGKTla 51 (601)
..+++.+|+|||||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4689999999999973
No 149
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.05 E-value=6.8 Score=43.25 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=24.4
Q ss_pred HHHHHhhcccCCeEEEEecCHHHHHHHHHHHHh
Q 007505 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554 (601)
Q Consensus 522 ~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~ 554 (601)
+.+.+.+. .+|.+|||+||....+.+++.+.+
T Consensus 243 ~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~ 274 (715)
T 2va8_A 243 AYTLDSLS-KNGQVLVFRNSRKMAESTALKIAN 274 (715)
T ss_dssp HHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHH
Confidence 33444333 468899999999999999998875
No 150
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.99 E-value=1.9 Score=44.86 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHHH---HHHHHHhhc----CcEEEEccCCChhHHHHH
Q 007505 20 EQYSYML---ELKRALDAK----GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 20 ~Q~~~~~---~v~~~l~~~----~~~~~EapTGtGKTla~L 53 (601)
+|.+..+ .+.+.+..+ .++++.+|+|||||...-
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 4444444 445555544 479999999999998444
No 151
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.93 E-value=0.87 Score=45.82 Aligned_cols=34 Identities=26% Similarity=0.116 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhh--------------cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA--------------KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--------------~~~~~~EapTGtGKTla~ 52 (601)
-+|.+.+..+.+.+.. ...+++.+|+|||||...
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 3455556666655532 357999999999999843
No 152
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=79.90 E-value=4.5 Score=36.40 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=46.3
Q ss_pred HHHHHhhcccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 522 KLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 522 ~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
..|.+++...++.+|||+++....+.+.+.++..| .+...+-+. ...++..++++|+. |+-.||+|.
T Consensus 44 ~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~----g~~~vLvaT 111 (191)
T 2p6n_A 44 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKG-------VEAVAIHGGKDQEERTKAIEAFRE----GKKDVLVAT 111 (191)
T ss_dssp HHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHH----TSCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhc----CCCEEEEEc
Confidence 44555666667889999999999999999987532 233333222 23457779999997 355677764
No 153
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.73 E-value=0.47 Score=45.42 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
..+++.+|+|||||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999843
No 154
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.71 E-value=1.4 Score=43.25 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcC--cEEEEccCCChhHHHHHH
Q 007505 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~~~EapTGtGKTla~L~ 54 (601)
+|.+.+..+..++.+++ +.++.+|.|+|||-....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 58889999999998876 789999999999875553
No 155
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=79.64 E-value=4.8 Score=44.93 Aligned_cols=84 Identities=13% Similarity=0.243 Sum_probs=50.1
Q ss_pred CEEEEecCCCCCccchhhhcCCCCcccccceeeecCCceeeeeeecCCCCCcceeeeccCCChHHHHHHHHHHHHhhcc-
Q 007505 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSI- 530 (601)
Q Consensus 452 ~svIltSgTLsp~~~f~~~Lg~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~l~s~f~~r~~~~~~~~l~~~i~~~~~~- 530 (601)
..+|++|||+. .+.|.+.++-.+.+. + . .....+.--|......++.......+..+...
T Consensus 241 ~~iIl~SAT~~-~~~l~~~~~~~~vi~------v-----------~-gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 241 LKIIIMSATLD-AEKFQRYFNDAPLLA------V-----------P-GRTYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp CEEEEEESCSC-CHHHHHHTTSCCEEE------C-----------C-CCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred ceEEEEecccc-HHHHHHHhcCCCccc------c-----------c-CcccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 57899999994 466666554222100 0 0 01112222232222334445555666665544
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHh
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWND 554 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~ 554 (601)
.+|.+|||+|+....+.+++.+.+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~ 325 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISL 325 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHH
Confidence 478999999999999999998864
No 156
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.18 E-value=5.3 Score=40.05 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhh------cC--cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDA------KG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~------~~--~~~~EapTGtGKTla~L 53 (601)
.++.+-+..+...+.. +. ++++.+|+|||||...-
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 3444444444444443 24 79999999999998543
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.02 E-value=1.1 Score=45.14 Aligned_cols=18 Identities=39% Similarity=0.206 Sum_probs=15.1
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
.++++.+|+|||||...-
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 158
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.91 E-value=13 Score=37.41 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=40.5
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
..+.+|||++|....+.+.+.+++.| .+...+-+. ...++..+++.|++ |+..||+|+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T 333 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREAN-------FTVSSMHGDMPQKERESIMKEFRS----GASRVLIST 333 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHH----TSSCEEEEC
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCC-------CceEEeeCCCCHHHHHHHHHHHHC----CCCCEEEEC
Confidence 45789999999999999999987642 122333222 23456779999987 456777764
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=78.90 E-value=1.4 Score=47.72 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L 53 (601)
-+|...++.+..++..+.++++.+|+|||||...-
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 46888999999999999999999999999998443
No 160
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.89 E-value=1.1 Score=46.28 Aligned_cols=34 Identities=29% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhh----------------cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~----------------~~~~~~EapTGtGKTla~ 52 (601)
-+|.++-+.+..++.. .+++++.+|+|||||...
T Consensus 18 vGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHH
Confidence 3567777777666632 358999999999999843
No 161
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.99 E-value=2 Score=44.19 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=16.4
Q ss_pred cEEEEccCCChhHHHHHHHHHHH
Q 007505 37 HCLLEMPTGTGKTIALLSLITSY 59 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~ 59 (601)
-+++.+|+|||||+ |+-|++.
T Consensus 208 GiLL~GPPGtGKT~--lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTM--LVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHH--HHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHH
Confidence 48999999999998 4445544
No 162
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.76 E-value=2 Score=44.26 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=16.8
Q ss_pred CcEEEEccCCChhHHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSY 59 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~ 59 (601)
+-+++.+|+|||||+ |+-|++.
T Consensus 216 rGvLL~GPPGtGKTl--lAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTL--LAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHH--HHHHHHH
T ss_pred CeEEEECCCCCcHHH--HHHHHHH
Confidence 469999999999998 4334543
No 163
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.57 E-value=2.1 Score=44.15 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=16.8
Q ss_pred CcEEEEccCCChhHHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSY 59 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~ 59 (601)
+.+++.+|+|||||+ |+-|++.
T Consensus 216 rGvLLyGPPGTGKTl--lAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTL--LARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHH--HHHHHHH
T ss_pred CeeEEECcCCCCHHH--HHHHHHH
Confidence 469999999999998 4445543
No 164
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.49 E-value=4 Score=51.67 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=42.9
Q ss_pred EEEcCeeeeCCCCC--------CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHH
Q 007505 3 FKLEDVTVYFPYDN--------IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61 (601)
Q Consensus 3 ~~i~~~~~~fp~~~--------~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~ 61 (601)
+.+.+..+.|+||. ..|.=......+..|+..+..+++++|+|||||-..- +++.+.
T Consensus 605 v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk--~LA~~l 669 (2695)
T 4akg_A 605 ISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVK--AFGQNL 669 (2695)
T ss_dssp EEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHH--HHHHTT
T ss_pred EEEcCeEeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHH--HHHHHh
Confidence 56677888888873 2355567777888999999999999999999998433 454443
No 165
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.20 E-value=1.7 Score=43.22 Aligned_cols=33 Identities=39% Similarity=0.431 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhc-------CcEEEEccCCChhHHHH
Q 007505 20 EQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-------~~~~~EapTGtGKTla~ 52 (601)
+|......+..++..+ .++++-+|+|+|||...
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5666777777777654 78999999999999733
No 166
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.04 E-value=1.4 Score=43.60 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHHh----------h----cCcEEEEccCCChhHHHHH
Q 007505 14 YDNIYPEQYSYMLELKRALD----------A----KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~----------~----~~~~~~EapTGtGKTla~L 53 (601)
|+. -.+|.+.++.+.+++. . ...+++.+|+|||||...-
T Consensus 17 ~~d-i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 17 WED-VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred HHH-hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 444 3567777777776662 1 2469999999999998443
No 167
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=76.80 E-value=2.2 Score=38.51 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=28.8
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
.+...++.+|+|+|||.++|--+..+.. .+. +|++.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~-kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI---AKQ-KIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTC-CEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-EEEEEEec
Confidence 3568899999999999988865555443 246 78887765
No 168
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.74 E-value=2.5 Score=42.93 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=16.8
Q ss_pred CcEEEEccCCChhHHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSY 59 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~ 59 (601)
+-+++.+|+|||||+ |.-|++.
T Consensus 183 rGvLL~GPPGTGKTl--lAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTL--LARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHH--HHHHHHH
T ss_pred CceEEeCCCCCCHHH--HHHHHHH
Confidence 569999999999998 4334543
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.67 E-value=0.98 Score=50.52 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhc-----------CcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-----------~~~~~EapTGtGKTla~L 53 (601)
.+|.+.+..+..++... .++++.+|||||||...-
T Consensus 461 ~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 461 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHH
Confidence 36777777777777642 269999999999998443
No 170
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.08 E-value=1.6 Score=39.96 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.1
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
.++++-+|+|||||...+
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999998554
No 171
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.06 E-value=1.3 Score=49.62 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhh--cCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~~EapTGtGKTla~L 53 (601)
-+|.+.++.+...+.. +.++++.+|+|||||...-
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 5677888888888865 4589999999999998444
No 172
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.98 E-value=2.8 Score=42.12 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 25 MLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 25 ~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+..+.-++..|+.+++-+|||+|||-
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 36777788899999999999999996
No 173
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=75.79 E-value=17 Score=36.55 Aligned_cols=67 Identities=13% Similarity=0.291 Sum_probs=44.1
Q ss_pred HHHHHhhcc-cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 522 KLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 522 ~~i~~~~~~-~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
..+..++.. .++.+|||++|....+.+++.+.+.| .+..++-++ ...++..+++.|++ |+..||+|+
T Consensus 255 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T 323 (412)
T 3fht_A 255 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG-------HQVALLSGEMMVEQRAAVIERFRE----GKEKVLVTT 323 (412)
T ss_dssp HHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC
T ss_pred HHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-------CeEEEecCCCCHHHHHHHHHHHHC----CCCcEEEEc
Confidence 334444443 45789999999999999999987542 223333222 23456778999986 455677764
No 174
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=75.76 E-value=0.81 Score=49.52 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhcC-------------cEEEEccCCChhHH
Q 007505 20 EQYSYMLELKRALDAKG-------------HCLLEMPTGTGKTI 50 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-------------~~~~EapTGtGKTl 50 (601)
+|.+.-..+.-++..+. ++++.+|+|||||.
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQ 342 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHH
Confidence 45555555555555554 89999999999997
No 175
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=75.73 E-value=6.3 Score=43.42 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.3
Q ss_pred ccCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCChHH
Q 007505 200 QFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241 (601)
Q Consensus 200 ~~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHnl~~ 241 (601)
..++|+|+++..+.... +.. ...+.+.++|||||||.+.+
T Consensus 113 ~~~~Iiv~Tpe~l~~~l-~~~-~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 113 GDCDIIVTTSEKADSLI-RNR-ASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp TTCSEEEEEHHHHHHHH-HTT-CSGGGGCCEEEETTGGGGGC
T ss_pred cCCCEEEECHHHHHHHH-HcC-hhHHhhcCEEEEeeeeecCC
Confidence 47899999988765432 221 11134678999999998854
No 176
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.71 E-value=1.3 Score=44.53 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHh------hcCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALD------AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~------~~~~~~~EapTGtGKTla~ 52 (601)
.++.+-+..+...+. ...++++.+|+|||||...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 555666666666652 3468999999999999844
No 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.43 E-value=1.9 Score=42.16 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhcC--cEEEEccCCChhHHHHH
Q 007505 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
+|.+.+..+...+..+. ++++.+|+|+|||...-
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 57777888888888764 69999999999997543
No 178
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=75.35 E-value=8 Score=33.91 Aligned_cols=67 Identities=12% Similarity=0.262 Sum_probs=44.0
Q ss_pred HHHHHhhccc-CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEec-CCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 522 KLLVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 522 ~~i~~~~~~~-~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~-~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
+.+.++++.. ++.+|||+++....+.+.+.+...| .+...+-+ ....++..+++.|++ |+-.||+|.
T Consensus 23 ~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~f~~----g~~~vLvaT 91 (175)
T 2rb4_A 23 QALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG-------HQVSLLSGELTVEQRASIIQRFRD----GKEKVLITT 91 (175)
T ss_dssp HHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT-------CCEEEECSSCCHHHHHHHHHHHHT----TSCSEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEe
Confidence 3444544444 4679999999999999999887643 12233322 223456778999986 456677764
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.31 E-value=2 Score=45.61 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhh-------------------cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 20 EQYSYMLELKRALDA-------------------KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~-------------------~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
+|.+.++.+...+.. ...+++.+|+|||||...- ++ +... +. +++....+
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~--~l--a~~l--~~-~~i~in~s 111 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH--LV--AQEL--GY-DILEQNAS 111 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH--HH--HHHT--TC-EEEEECTT
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHH--HH--HHHc--CC-CEEEEeCC
Confidence 455666666666654 2579999999999998544 23 2332 34 66665444
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=75.28 E-value=2.1 Score=42.11 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 30 ~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
..|..|...++.|++|+|||.-.+.-+...+.. +. +|+|.+-
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~-~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC-EEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC-eEEEEEC
Confidence 345556789999999999997666545444442 35 6766553
No 181
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.18 E-value=2.1 Score=44.41 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
.|..|...+|-|++|+|||.-.+--+...+.. +. +|+|.|--
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~-~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC-EEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC-EEEEEECC
Confidence 45567789999999999999777666666553 45 67666533
No 182
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=75.10 E-value=3.4 Score=36.95 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=27.1
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
+...++.+|.|+|||..++--+..+.. .+. ++++.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~---~g~-~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL---GKK-KVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH---TTC-EEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEEeec
Confidence 567889999999999987754444433 246 78777665
No 183
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=74.94 E-value=1.1 Score=41.88 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=25.2
Q ss_pred ccCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCC
Q 007505 200 QFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238 (601)
Q Consensus 200 ~~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHn 238 (601)
.+++|+|++...|++.... .+..-.++|+||||.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHE 187 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTS
T ss_pred CCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCcc
Confidence 3589999998766654221 255778999999996
No 184
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=74.80 E-value=8.7 Score=33.30 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=40.1
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEec-CCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~-~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+.+.++..| .....+-+ .+..++..+++.|++ |+..||+|+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRS----GSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHc----CCCEEEEEc
Confidence 45789999999999999999987542 12233322 223456778999986 456777775
No 185
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.36 E-value=1.2 Score=50.47 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhc-----------CcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-----------~~~~~EapTGtGKTla~ 52 (601)
.+|.+.+..+..++... .++++.+|||||||...
T Consensus 561 iG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 35677777777777642 37899999999999843
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=74.33 E-value=2 Score=44.53 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 27 ~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
.+...|..|...+|-|++|+|||.-.+.-+...+... +. +|+|.+-
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~-~vl~~sl 237 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GV-GVGIYSL 237 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CC-CEEEEES
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEEC
Confidence 3334455677899999999999987666555555432 45 5665543
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=74.23 E-value=6.6 Score=40.54 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.8
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
.++++.+|+|+|||...
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48999999999999843
No 188
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=74.12 E-value=1.8 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla 51 (601)
|+.+.+ .+.+++..+..++|.+|.|+|||.-
T Consensus 17 R~~el~---~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 17 REEESR---KLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CHHHHH---HHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred hHHHHH---HHHHHHhcCCeEEEECCCcCCHHHH
Confidence 454444 4455666678999999999999973
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.85 E-value=1.6 Score=43.73 Aligned_cols=34 Identities=29% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHh--------------hcCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~--------------~~~~~~~EapTGtGKTla~ 52 (601)
-+|.+.+..+.+++. ....+++.+|+|||||...
T Consensus 54 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 54 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 455555666665552 1246999999999999843
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.81 E-value=2.1 Score=42.18 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=14.5
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
+.+++.+|+|||||...
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 46999999999999843
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=73.64 E-value=2.5 Score=41.95 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 27 ~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
.+...|..|...++-|++|+|||.-.+--+...+. .+. +|.|.+--
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~-~Vl~fSlE 83 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDR-GVAVFSLE 83 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTC-EEEEEESS
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCC-eEEEEeCC
Confidence 33445666788999999999999877765655555 246 77666543
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.58 E-value=3.1 Score=39.69 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=15.1
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
.++++.+|+|||||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998443
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=73.48 E-value=2.3 Score=44.30 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 28 v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
+...+..|...++-||+|+|||.-.+.-+...+... +. +|+|.+--.
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~-~Vl~~s~E~ 242 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NE-NVAIFSLEM 242 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SC-CEEEEESSS
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEECCC
Confidence 333455567899999999999987666555555433 45 676665433
No 194
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.39 E-value=18 Score=36.22 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=39.8
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC--CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~--~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+++.+++.| ..+..-+. ...++..+++.|++ |+..||+|+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~--------~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLv~T 315 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLG--------YSCYYSHARMKQQERNKVFHEFRQ----GKVRTLVCS 315 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT--------CCEEEECTTSCHHHHHHHHHHHHT----TSSSEEEES
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcC--------CCeEEecCCCCHHHHHHHHHHHhc----CCCcEEEEc
Confidence 34789999999999999999987532 23333333 23456778999986 456677764
No 195
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=72.75 E-value=2.4 Score=44.79 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 23 SYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 23 ~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+++..+.-++..+.++++-+|||+|||-
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 3455666677889999999999999996
No 196
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=72.67 E-value=3.7 Score=38.22 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
.+..|...++-+|+|+|||.-.+.-+...+.. +. +++|.+-
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~-~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE-PGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC-CEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC-eEEEEEc
Confidence 34567889999999999998655433333332 34 5555443
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.61 E-value=1.6 Score=45.90 Aligned_cols=18 Identities=44% Similarity=0.482 Sum_probs=15.1
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
..+++.+|+|||||+..-
T Consensus 239 ~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CcEEEECcCCCCHHHHHH
Confidence 579999999999998443
No 198
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.29 E-value=3.3 Score=42.69 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=26.9
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchh
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~ 79 (601)
..|+++-||||+|||..+ -+.+..+... +. ++||.=+.-..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~-~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR--GD-RMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT--TC-EEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC--CC-cEEEEeCCCch
Confidence 468999999999999975 1222222333 45 77777665443
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=72.06 E-value=3.9 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=15.5
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.++.+++-+|+|+|||-
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67889999999999987
No 200
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.54 E-value=3.8 Score=41.88 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHH-Hhh-----------cCcEEEEccCCChhHHHHHHHHHH
Q 007505 18 YPEQYSYMLELKRA-LDA-----------KGHCLLEMPTGTGKTIALLSLITS 58 (601)
Q Consensus 18 r~~Q~~~~~~v~~~-l~~-----------~~~~~~EapTGtGKTla~L~~~l~ 58 (601)
...|++-+.+.... +.. .+-+++.+|+|||||+ |+-|++
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl--LAkAiA 237 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL--LAKAVA 237 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH--HHHHHH
Confidence 36666666655543 221 2469999999999998 333444
No 201
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=71.39 E-value=2.2 Score=43.98 Aligned_cols=43 Identities=21% Similarity=0.101 Sum_probs=32.0
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el 87 (601)
+..++.||.|+|||....- .+. .+ +++|.|+|+++.+.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~----~~~----~~-~~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS----RVN----FE-EDLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH----HCC----TT-TCEEEESCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH----Hhc----cC-CeEEEeCCHHHHHHHHHHh
Confidence 4688999999999985542 111 24 6899999999987766644
No 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.11 E-value=5.1 Score=41.05 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
.+.+...+..+. ...++.++|-+|||+|||-
T Consensus 152 ~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 152 TAHNHDNFRRLI--KRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp CHHHHHHHHHHH--TSSSEEEEEECSTTSCHHH
T ss_pred CHHHHHHHHHHH--HhcCCeEEEECCCCCCHHH
Confidence 356666666662 2456789999999999996
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.93 E-value=3.4 Score=42.66 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=16.8
Q ss_pred CcEEEEccCCChhHHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSY 59 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~ 59 (601)
+-+|+.+|+|||||+ |.-|++.
T Consensus 244 rGILLyGPPGTGKTl--LAkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTL--CARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHH--HHHHHHH
T ss_pred CceEeeCCCCCcHHH--HHHHHHh
Confidence 469999999999998 4435543
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.48 E-value=4.8 Score=40.24 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhh------cCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDA------KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~------~~~~~~EapTGtGKTla~L 53 (601)
.++.+-++.+.+.+.. +..+++.+|+|||||...-
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHH
Confidence 3444445555555543 4589999999999998443
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=70.00 E-value=2.8 Score=43.44 Aligned_cols=34 Identities=29% Similarity=0.160 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHh--------------hcCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~--------------~~~~~~~EapTGtGKTla~ 52 (601)
-+|.+....+.+++. ....+++.+|+|||||...
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 456666666666652 1256999999999999843
No 206
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.84 E-value=2.2 Score=45.08 Aligned_cols=43 Identities=5% Similarity=-0.085 Sum_probs=29.1
Q ss_pred HHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 30 ~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
..+..|...+|-|++|+|||.-.+--+...+... +. +|+|.+-
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~-~vl~~s~ 279 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GK-KVGLAML 279 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CC-CEEEEES
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CC-cEEEEec
Confidence 3455678899999999999987665555444422 45 5655543
No 207
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.67 E-value=3.1 Score=37.85 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=15.1
Q ss_pred cEEEEccCCChhHHHHHH
Q 007505 37 HCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~ 54 (601)
+.++.+|.|+|||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 678999999999996543
No 208
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.38 E-value=2.9 Score=39.83 Aligned_cols=17 Identities=35% Similarity=0.175 Sum_probs=14.9
Q ss_pred cEEEEccCCChhHHHHH
Q 007505 37 HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L 53 (601)
.+++-+|+|||||+-..
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999998554
No 209
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.03 E-value=3.7 Score=40.68 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 24 ~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+...+.-.+..++.+++-+|||+|||-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 566777778889999999999999996
No 210
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=68.00 E-value=12 Score=32.67 Aligned_cols=58 Identities=9% Similarity=0.061 Sum_probs=39.8
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEec-CCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~-~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+.+.+...| .+...+-+ ....++..+++.|++ |+..||+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQN-------FPAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC-------CCEEEEECCCCHHHHHHHHHHHHC----CCCcEEEEC
Confidence 34679999999999999999987543 22333322 223456778999986 456677764
No 211
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.58 E-value=3.8 Score=39.67 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 25 ~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
...+.-.+..|...++-||+|+|||.-.+.-+...+.. .|. +|+|.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~-~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGK-KVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCC-CEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCC-eEEEEeC
Confidence 34555556778899999999999998655444333332 254 5755543
No 212
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=67.05 E-value=3.1 Score=45.14 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHH
Q 007505 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~ 85 (601)
+.+.|.+.+..+.++.. ++.++.|+-|.|||. .+--+++.+. . +++|+.||+.-...+.+
T Consensus 176 ~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa-~lG~~~a~~~-----~-~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSA-LAGQLISRIA-----G-RAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp CCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHH-HHHHHHHHSS-----S-CEEEECSSCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHH-HHHHHHHHHH-----h-CcEEECCCHHHHHHHHH
Confidence 35788888877666542 568999999999994 3322333322 3 57999999876665544
No 213
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=66.29 E-value=7.2 Score=35.22 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 29 ~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
..+=.+++.+++-.|+|.|||-+.+--++..+-. |. ||.|.
T Consensus 22 ~~~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~-rV~~v 62 (196)
T 1g5t_A 22 AQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGH---GK-NVGVV 62 (196)
T ss_dssp -----CCCCEEEEESSSSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred hhccccCceEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEE
Confidence 3333456789999999999999999777665542 56 78776
No 214
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.86 E-value=6 Score=37.12 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhh-----------cCcEEEEccCCChhHH
Q 007505 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----------~~~~~~EapTGtGKTl 50 (601)
+.+++-++.+...+.. ...+++.+|+|||||.
T Consensus 22 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 22 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 4555555555554432 1248999999999997
No 215
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.64 E-value=17 Score=36.50 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=38.5
Q ss_pred HHHhhcc-cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 524 LVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 524 i~~~~~~-~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
+..+++. ..+.+|||++|....+.+++.+...| ..+..-+.+ ..++..+++.|++ |+..||+|+
T Consensus 271 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--------~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T 337 (414)
T 3eiq_A 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARD--------FTVSAMHGDMDQKERDVIMREFRS----GSSRVLITT 337 (414)
T ss_dssp HHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT--------CCCEEC---CHHHHHHHHHHHHSC----C---CEEEC
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC--------CeEEEecCCCCHHHHHHHHHHHHc----CCCcEEEEC
Confidence 3343343 34789999999999999999887542 223322222 2346678888865 455677664
No 216
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.53 E-value=7.2 Score=41.00 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=26.8
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
++.|++|-++||+|||-..-+-.++.+.....+.+++++.=..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3569999999999999866443333233222234466666544
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=65.36 E-value=5.2 Score=36.57 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHH
Q 007505 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 14 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla 51 (601)
..+...+|...... +..|+.+.+-+|.|+|||--
T Consensus 5 i~pk~~g~~~~l~~----i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDA----IDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHH----HHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHh----ccCCCEEEEECCCCCCHHHH
Confidence 34445677655444 57899999999999999873
No 218
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.23 E-value=8.2 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=26.4
Q ss_pred CHHHHHHHHHH-----HHHHhhcCc--EEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLEL-----KRALDAKGH--CLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v-----~~~l~~~~~--~~~EapTGtGKTla~L 53 (601)
...|.+..+.+ .+++.+|.+ ++.-+.||+|||....
T Consensus 61 ~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 46788877653 345655654 6889999999999775
No 219
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.00 E-value=2.3 Score=42.27 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHH-hhc--CcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRAL-DAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l-~~~--~~~~~EapTGtGKTla~L 53 (601)
-+|.+.+..+..++ ..+ .++++.+|+|+|||...-
T Consensus 17 vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 17 SHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 36778888888877 554 369999999999997544
No 220
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.36 E-value=7.1 Score=36.15 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=24.0
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEE-EEccc
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI-YCTRT 76 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv-~~t~T 76 (601)
++++-++.|+|||...+.-+...+. . |. +|+ +.+-+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~--G~-~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-Q--GV-RVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-T--TC-CEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-C--CC-CEEEEEeCC
Confidence 5889999999999987765544433 2 44 553 44444
No 221
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.14 E-value=2.8 Score=37.54 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHhhcCcEEEEccCCChhHH
Q 007505 30 RALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 30 ~~l~~~~~~~~EapTGtGKTl 50 (601)
..+..+..+++++|+|+|||-
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGT 27 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHH
T ss_pred cccCCCCEEEEECCCCCCHHH
Confidence 344566789999999999997
No 222
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=63.85 E-value=15 Score=32.62 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=36.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 532 ~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
++.+|||+++....+.+.+.++..| .....+-+. +..++..+++.|+. |+-.||+|+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT 103 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRS----GKSPILVAT 103 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTT-------CCEEEEC--------CHHHHHHHH----TSSSEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcC-------CceEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEc
Confidence 4679999999999999999987543 122333221 22346678999986 355677764
No 223
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=63.72 E-value=7.1 Score=35.79 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.0
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
+...++.+|.|+|||.++|--+..+..+ +. +|++.++..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~-kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQ-HAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 4567788999999999888766655442 46 788776653
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=63.47 E-value=6.2 Score=41.16 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=14.4
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
+.+++.+|+|||||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999843
No 225
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=62.72 E-value=1.8 Score=42.94 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~ 52 (601)
|+.+.+.+. + +.. ..++|.+|.|+|||.-.
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHH
Confidence 555554443 3 444 68999999999999743
No 226
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.84 E-value=6.1 Score=50.71 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
...=..+..-+...+..++++++.+|||||||.
T Consensus 1287 T~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1287 TVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred chHHHHHHHHHHHHHHCCCcEEEECCCCCCHHH
Confidence 444455666677778889999999999999995
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=61.70 E-value=8 Score=36.90 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhh-----------cCcEEEEccCCChhHHH
Q 007505 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----------~~~~~~EapTGtGKTla 51 (601)
+.+++-+..+...+.. ...+++.+|+|||||..
T Consensus 46 ~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 46 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4555555666555532 12489999999999973
No 228
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=61.32 E-value=22 Score=30.51 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=40.0
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+.+.+...| .....+-+. +..++..+++.|++ |+-.||+|+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~----g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLG-------YPCDKIHGGMIQEDRFDVMNEFKR----GEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEC
Confidence 45689999999999999999987542 223333222 23456778999986 355677764
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=61.30 E-value=9 Score=35.00 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHhhcCcEEEEccCCChhHHHHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L 53 (601)
.+..|..+++-+|+|+|||.-..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHH
Confidence 34567889999999999996443
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=60.96 E-value=8.8 Score=37.67 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=18.1
Q ss_pred hcCcEEEEccCCChhHHHHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLI 56 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~ 56 (601)
.+...++-+|+|+|||.-.+.-+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHH
Confidence 45689999999999998655433
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=60.84 E-value=3.2 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.9
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.++.+++-+|+|+|||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46788999999999997
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.50 E-value=2.7 Score=38.19 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.5
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..+..+++.+|+|+|||-
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 4567889999999999986
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=60.47 E-value=9.8 Score=39.91 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhh-----------cCcEEEEccCCChhHHHH
Q 007505 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----------~~~~~~EapTGtGKTla~ 52 (601)
+.+++-+..+...+.. .+.+++.+|+|||||...
T Consensus 37 ~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 37 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4455555555555543 134899999999999833
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=59.94 E-value=3.4 Score=37.71 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.1
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++-+|+|+|||-
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 46789999999999997
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.66 E-value=3.5 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=15.1
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.++.+++-+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 46789999999999997
No 236
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=59.66 E-value=18 Score=32.91 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=39.9
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||+++....+.+.+.+...| ..+..-+.+ ..++..+++.|++ |+-.||+|+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~--------~~~~~lhg~~~~~~r~~~~~~f~~----g~~~vlvaT 88 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLG--------HPAQALHGDLSQGERERVLGAFRQ----GEVRVLVAT 88 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHT--------CCEEEECSSSCHHHHHHHHHHHHS----SSCCEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHHHC----CCCeEEEec
Confidence 46899999999999999999887532 223333333 3456778999986 355677764
No 237
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.64 E-value=4.8 Score=40.82 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHH-HHH-hh----cCcEEE--EccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK-RAL-DA----KGHCLL--EMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~-~~l-~~----~~~~~~--EapTGtGKTla~L 53 (601)
|..+.+.+.... ... .. ..+++| .+|+|+|||...-
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 555555555544 333 22 347888 9999999998443
No 238
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=59.64 E-value=5.3 Score=42.08 Aligned_cols=67 Identities=18% Similarity=0.345 Sum_probs=39.4
Q ss_pred HHHHHhhcc-cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecC-CchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 522 KLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 522 ~~i~~~~~~-~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
..+..++.. .++.+|||++|....+.+++.+.+.| .+...+-.+ ...++..+++.|++ |+..||+|+
T Consensus 346 ~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~-------~~v~~~hg~~~~~~R~~il~~f~~----g~~~VLVaT 414 (508)
T 3fho_A 346 NVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG-------HTVACLTGNLEGAQRDAIMDSFRV----GTSKVLVTT 414 (508)
T ss_dssp HHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTT-------CCCCEEC-----CTTGGGTHHHHS----SSCCCCEEC
T ss_pred HHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC-------CcEEEEeCCCCHHHHHHHHHHHHC----CCCeEEEeC
Confidence 334444444 45789999999999999999887532 122222111 22345667889975 345566654
No 239
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=59.52 E-value=15 Score=40.56 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=26.8
Q ss_pred ccCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCChH
Q 007505 200 QFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240 (601)
Q Consensus 200 ~~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHnl~ 240 (601)
..++|+|+++..+.....+. ...+.+.++|||||||.+.
T Consensus 113 ~~~~Iiv~Tpe~l~~~~~~~--~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 113 GKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp GGCSEEEECHHHHHHHHHHT--CTTGGGEEEEEEETGGGGG
T ss_pred CCCCEEEECHHHHHHHHHcC--hhhhhcCCEEEEECCcccC
Confidence 57999999998765432221 1113466899999999884
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=59.48 E-value=7.3 Score=35.35 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=18.8
Q ss_pred HHhhcCcEEEEccCCChhHHHHHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L~ 54 (601)
.+..|...++-+|+|+|||.-.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHH
Confidence 345677899999999999975443
No 241
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.20 E-value=17 Score=46.22 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHH
Q 007505 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~ 54 (601)
-+.+..-+..+++++..+..+++-+|||+|||.++=+
T Consensus 906 ~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4667677777888888888899999999999997654
No 242
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.81 E-value=3.6 Score=35.76 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.2
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++.+|+|+|||-
T Consensus 2 ~~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 2 KVILITGMPGSGKSE 16 (179)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 367899999999997
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.57 E-value=7.2 Score=36.05 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=18.6
Q ss_pred HhhcCcEEEEccCCChhHHHHHH
Q 007505 32 LDAKGHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTla~L~ 54 (601)
+..|...++-+|+|+|||.-.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 44567899999999999985554
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.35 E-value=5.2 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.100 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhh--cCcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~~~EapTGtGKTla~L 53 (601)
-+|.+.+..+.+.+.. +.++++.+|+|||||...-
T Consensus 189 iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4566677778887765 4689999999999998543
No 245
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=58.27 E-value=18 Score=37.13 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 532 ~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
++.++||+||-...+.+++.++..| ..+..-+. .++..+++.|++ |+-.||+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~--------~~v~~lhg--~~R~~~~~~F~~----g~~~vLVaT 230 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG--------KSVVVLNR--KTFEREYPTIKQ----KKPDFILAT 230 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--------CCEEECCS--SSCC------------CCCSEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC--------CCEEEecc--hhHHHHHhhhcC----CCceEEEEC
Confidence 7889999999999999999987532 23333333 345678899986 456677764
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=58.10 E-value=3.5 Score=37.16 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.8
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..|..+.+-+|+|+|||-
T Consensus 5 ~~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECcCCCCHHH
Confidence 467789999999999997
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=58.01 E-value=3.5 Score=37.17 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..+..+++.+|+|+|||-
T Consensus 3 i~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp -CCCCEEEEECSTTSCHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3467789999999999986
No 248
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.78 E-value=5.1 Score=35.71 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.2
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..+..+++++|.|+|||-
T Consensus 6 m~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH
T ss_pred CcCCCEEEEECCCCCCHHH
Confidence 3456789999999999997
No 249
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=57.69 E-value=2.9 Score=38.02 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCcEEEEeCCCChH
Q 007505 227 KESVVVFDEAHNID 240 (601)
Q Consensus 227 ~~~ilIiDEAHnl~ 240 (601)
.+.+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 48999999999983
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.63 E-value=3.9 Score=36.24 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.4
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++++|.|+|||-
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4678999999999997
No 251
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=57.57 E-value=4.5 Score=38.21 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhh---cCcEEEEccCCChhHHH
Q 007505 22 YSYMLELKRALDA---KGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 22 ~~~~~~v~~~l~~---~~~~~~EapTGtGKTla 51 (601)
......+.-.+.. +..+++-+|.|+|||-.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHH
Confidence 3467777777777 89999999999999973
No 252
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.04 E-value=3.1 Score=39.62 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 25 MLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 25 ~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
...+. +..++.+++-+|||+|||-
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHH
T ss_pred HHHHh--hCCCCEEEEECCCCccHHH
Confidence 34444 6677899999999999996
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.72 E-value=2.5 Score=41.36 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 24 ~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
....|.-.+..|+.+.|-+|+|+|||-
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHH
Confidence 455555566678899999999999986
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=56.68 E-value=4.1 Score=36.71 Aligned_cols=33 Identities=24% Similarity=0.103 Sum_probs=16.0
Q ss_pred HHHHHHHHH-HHHHHhhcCcEEEEccCCChhHHH
Q 007505 19 PEQYSYMLE-LKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 19 ~~Q~~~~~~-v~~~l~~~~~~~~EapTGtGKTla 51 (601)
|++..+... |.-.+..+..+++.+|+|+|||-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHH
Confidence 444444432 333355677899999999999973
No 255
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=56.60 E-value=13 Score=35.45 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=19.7
Q ss_pred HhhcCcEEEEccCCChhHHHHHHHH
Q 007505 32 LDAKGHCLLEMPTGTGKTIALLSLI 56 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTla~L~~~ 56 (601)
+..|...++-+|+|+|||.-.+.-+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567789999999999998665543
No 256
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=56.26 E-value=13 Score=39.49 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=28.0
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
..|++|-+.||+|||...-.-.++.+.......+++++.=+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999998765443443333211234777776654
No 257
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=56.09 E-value=10 Score=34.09 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=26.9
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
++..++-+|.|+|||.-+|-.+-.+..+ +. +|+|.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~-kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY-KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC-eEEEEccc
Confidence 5689999999999997666654434332 45 78777654
No 258
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.09 E-value=26 Score=45.15 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=41.4
Q ss_pred EEEcCeeeeCCCCC--------CCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHHHHHHHHHHHHH
Q 007505 3 FKLEDVTVYFPYDN--------IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61 (601)
Q Consensus 3 ~~i~~~~~~fp~~~--------~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTla~L~~~l~~~~ 61 (601)
+.+.+-.+.|+||. +.|-=-.....+..|+..+..+..++|+|||||-..- .++.+.
T Consensus 564 v~~~~~~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k--~La~~l 628 (3245)
T 3vkg_A 564 IHMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVK--ALGSQL 628 (3245)
T ss_dssp EEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHH--HHHHHT
T ss_pred EEEcCceecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH--HHHHHh
Confidence 56677888888883 2455556666777788888888999999999998443 455444
No 259
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=56.09 E-value=15 Score=38.34 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=38.8
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
.+....+.+-||+|||+. ++.+. ... ++ +++|.|++..+..|+.+||+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~--~~~--~~-p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA--ERH--AG-PVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH--HHS--SS-CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH--HHh--CC-CEEEEeCCHHHHHHHHHHHHhh
Confidence 456789999999999983 33332 222 46 7999999999999999999875
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=55.94 E-value=11 Score=36.37 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=22.0
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t 74 (601)
++.+++-+|+|+|||-....-+..+... .|+ +|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~-~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE--KHK-KIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT--TCC-CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCC-EEEEEe
Confidence 4578888999999997444322222221 255 665543
No 261
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=55.63 E-value=29 Score=35.42 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHhhcccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 524 i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
+.+++...++++|||++|....+.+.+.+...| ..+..-+.+ ..++..++++|++ |+..||+|+
T Consensus 292 l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~--------~~~~~lhg~~~~~~R~~~l~~F~~----g~~~vLvaT 357 (434)
T 2db3_A 292 LIEILSEQADGTIVFVETKRGADFLASFLSEKE--------FPTTSIHGDRLQSQREQALRDFKN----GSMKVLIAT 357 (434)
T ss_dssp HHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTT--------CCEEEESTTSCHHHHHHHHHHHHT----SSCSEEEEC
T ss_pred HHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCC--------CCEEEEeCCCCHHHHHHHHHHHHc----CCCcEEEEc
Confidence 344444556679999999999999999987542 233333333 3457789999986 466788875
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.48 E-value=9.9 Score=37.95 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=27.7
Q ss_pred hhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccch
Q 007505 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~ 78 (601)
..+...++.+|+|+|||.-.+.-+...+.. +. +++|.+--++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyid~E~s 102 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAEHA 102 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeCCCC
Confidence 355789999999999999766554444432 44 5655554443
No 263
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=54.91 E-value=12 Score=37.38 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=30.6
Q ss_pred EcCeeeeCC--CCCCCHHHHHHHHHHHH----HHhhcC--cEEEEccCCChhHHHHH
Q 007505 5 LEDVTVYFP--YDNIYPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 5 i~~~~~~fp--~~~~r~~Q~~~~~~v~~----~l~~~~--~~~~EapTGtGKTla~L 53 (601)
+++-.+.|. |.+ ...|.++.+.+.. .+-+|- .++.-+.||+|||....
T Consensus 48 ~~~~~f~FD~Vf~~-~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 48 IAGKVYLFDKVFKP-NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp ETTEEEECSEEECT-TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred ECCEEEeCceEecC-CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 444444554 333 5788887766542 222343 57788999999999764
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=54.88 E-value=5.2 Score=36.32 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.4
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++-+|||+|||-
T Consensus 34 g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSE 49 (205)
T ss_dssp TEEEEEECCCTTTTHH
T ss_pred CEEEEEECCCCCCHHH
Confidence 3458899999999985
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=54.68 E-value=4.9 Score=39.33 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.5
Q ss_pred cCcEEEEccCCChhHHHH
Q 007505 35 KGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~ 52 (601)
+..++|-+|||+|||-..
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 346789999999999743
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.64 E-value=4.7 Score=34.97 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=12.8
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++.+|.|+|||-
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999997
No 267
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=54.46 E-value=6.6 Score=37.60 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=12.9
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++.+|+|||||.
T Consensus 46 GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 46 GVLLAGPPGCGKTL 59 (274)
T ss_dssp EEEEESSTTSCHHH
T ss_pred eEEEECCCCCcHHH
Confidence 38999999999998
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=54.11 E-value=5.2 Score=35.86 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.4
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
.++|+-||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999986
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=54.02 E-value=5 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=14.3
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
..++++.+|+|+|||-
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4678999999999997
No 270
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=54.01 E-value=9.3 Score=37.39 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=18.3
Q ss_pred hcCcEEEEccCCChhHHHHHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l 57 (601)
.+...++-+|+|+|||.-.+.-+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999986654433
No 271
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=53.68 E-value=6.1 Score=36.99 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.9
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
...+++.+|.|+|||-
T Consensus 29 ~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3469999999999996
No 272
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.59 E-value=6.5 Score=44.49 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhc--CcEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTla~L 53 (601)
-+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 46677788888888764 479999999999998443
No 273
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.25 E-value=14 Score=36.36 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=30.4
Q ss_pred EcCeeeeCC--CCCCCHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 5 LEDVTVYFP--YDNIYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 5 i~~~~~~fp--~~~~r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
+++-.+.|. |.+ ...|.++-+.+. +.+-+|- .++.-+.||+|||....
T Consensus 41 ~~~~~f~FD~Vf~~-~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 41 IASKPYAFDRVFQS-STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp ETTEEEECSEEECT-TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred ECCEEEECCeEeCC-CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 444444454 333 567888776653 2223343 57888999999999765
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.14 E-value=6.3 Score=38.96 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=14.8
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
..++|-+|||+|||-..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997333
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.10 E-value=5.6 Score=34.99 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.4
Q ss_pred hcCcEEEEccCCChhHHH
Q 007505 34 AKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla 51 (601)
.+.++++.+|+|+|||-.
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 456899999999999973
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.00 E-value=5.2 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=15.0
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++++|.|+|||-
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 45689999999999997
No 277
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=52.95 E-value=5 Score=36.84 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.7
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
....+++++|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34679999999999997
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=52.29 E-value=8.4 Score=38.46 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.4
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..++.+++-+|||+|||-
T Consensus 121 ~~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKST 138 (356)
T ss_dssp CSSEEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 455689999999999986
No 279
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=52.24 E-value=13 Score=36.39 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=29.8
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhH
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEM 80 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~ 80 (601)
..++.+|+|+|||.-.|-.+...++..+ +. +++|.+.-++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~-~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DA-VCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TC-EEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-Cc-eEEEEeccchhh
Confidence 6788999999999977766555555321 46 777777666553
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=52.11 E-value=5.2 Score=36.88 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.5
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
.....+++++|+|+|||-
T Consensus 5 ~~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp --CCEEEEEECTTSSHHH
T ss_pred ccCcEEEEECCCCCCHHH
Confidence 345679999999999997
No 281
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=52.09 E-value=1.4e+02 Score=32.72 Aligned_cols=98 Identities=8% Similarity=0.105 Sum_probs=54.8
Q ss_pred cccchHHhhccCEEEEecCCCCCcc-chhhhcCCCCcccccceeeecCCceeeeeeecCCCCCccee-eeccCCChHHHH
Q 007505 441 SLAVKPVFDRFQSVVITSGTLSPID-LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST-KFDMRSDPGVAR 518 (601)
Q Consensus 441 s~~l~~l~~~~~svIltSgTLsp~~-~f~~~Lg~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~l~s-~f~~r~~~~~~~ 518 (601)
+..++..|.....+.-+|||+.+-. .|....|++.+ +||.........- ..-|....+-..
T Consensus 399 ~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv-----------------~IPtnkp~~R~d~~d~vy~t~~eK~~ 461 (822)
T 3jux_A 399 TITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVV-----------------VIPTHKPMIRKDHDDLVFRTQKEKYE 461 (822)
T ss_dssp EECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEE-----------------ECCCSSCCCCEECCCEEESSHHHHHH
T ss_pred HHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEE-----------------EECCCCCcceeecCcEEEecHHHHHH
Confidence 3345788888899999999997643 45555555321 1111000011111 111222222223
Q ss_pred HHHHHHHHhhcccCCeEEEEecCHHHHHHHHHHHHhcc
Q 007505 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556 (601)
Q Consensus 519 ~l~~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~~~ 556 (601)
.+.+.|.... ..+.-+|||+.|-..-+.+.+.+...|
T Consensus 462 al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~G 498 (822)
T 3jux_A 462 KIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKG 498 (822)
T ss_dssp HHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCC
Confidence 3333333321 134569999999999999999998654
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=52.05 E-value=5.8 Score=35.79 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=13.9
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.++.+++-+|+|+|||-
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56789999999999986
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.05 E-value=4.3 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.7
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++++|.|+|||-
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45678999999999996
No 284
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=51.98 E-value=14 Score=36.67 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=29.7
Q ss_pred EcCeeeeCC--CCCCCHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHH
Q 007505 5 LEDVTVYFP--YDNIYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIAL 52 (601)
Q Consensus 5 i~~~~~~fp--~~~~r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~ 52 (601)
+++-.+.|. |.+ ...|.++-+.+. +.+-+|- .++.-+.||+|||...
T Consensus 58 ~~~~~F~FD~Vf~~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 58 VDQNEFHFDHAFPA-TISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp ETTEEEECSEEECT-TCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred ecCcEEEcceEECC-CCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344445555 333 567888776643 2223343 5778899999999975
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=51.96 E-value=12 Score=37.58 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.0
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
.+...+|-+|+|+|||.-.+.-+...+.. +. +|+|.+--+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~-~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG-TCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC-eEEEEECCC
Confidence 45678999999999998666544444432 34 555554433
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=51.35 E-value=12 Score=37.18 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=27.3
Q ss_pred HhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
+..+...++-+|+|+|||.-.+.-+...+.. +. +++|.+.-+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyi~~E~ 99 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA---GG-IAAFIDAEH 99 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC-eEEEEECCC
Confidence 3356789999999999998666544444432 34 555554433
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=51.00 E-value=14 Score=36.68 Aligned_cols=24 Identities=21% Similarity=-0.074 Sum_probs=18.4
Q ss_pred hcCcEEEEccCCChhHHHHHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l 57 (601)
.|...++-+|+|+|||.-.+.-+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999986664433
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=50.98 E-value=9.3 Score=38.48 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.6
Q ss_pred HHhhcCcEEEEccCCChhHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTl 50 (601)
.+..+..+++.+|+|+|||.
T Consensus 165 ~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34456789999999999986
No 289
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=50.56 E-value=86 Score=36.37 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=25.3
Q ss_pred HHHHHHHhhcccCCeEEEEecCHHHHHHHHHHHHh
Q 007505 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWND 554 (601)
Q Consensus 520 l~~~i~~~~~~~~gg~LVfFpSy~~l~~v~~~~~~ 554 (601)
+...+..+...-++.+|||++|-..-+.+...+..
T Consensus 429 l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~ 463 (1108)
T 3l9o_A 429 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK 463 (1108)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHh
Confidence 33344444444557899999999999999888764
No 290
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.28 E-value=11 Score=37.51 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHhh---c--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKRALDA---K--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~--~~~~~EapTGtGKTla~L 53 (601)
-..|.+.-+.|...+.. | ..++.-+.||+|||....
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 46788888887765542 3 357888999999999775
No 291
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.58 E-value=6.4 Score=39.43 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=28.5
Q ss_pred hccCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCChH
Q 007505 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240 (601)
Q Consensus 199 ~~~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHnl~ 240 (601)
...++|+|+++..|++...+.. ..+...+++||||||++.
T Consensus 136 ~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 136 LRDAQIVVGTPGRVFDNIQRRR--FRTDKIKMFILDEADEML 175 (394)
T ss_dssp HHHCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCC--cchhhCcEEEEEChHHhh
Confidence 3478999999998875543321 123467899999999864
No 292
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=49.47 E-value=13 Score=37.10 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=27.3
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchh
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~ 79 (601)
.+...+|-+|+|+|||.-.+.-+...+. .+. +|+|.+.-++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg-~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGG-VAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTC-CEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCC-eEEEEeccccc
Confidence 4568999999999999866654444333 245 66665544433
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.00 E-value=6.3 Score=35.27 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.6
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999997
No 294
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=48.73 E-value=3.2 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=16.0
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..|..+.+-+|.|.|||-
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 567789999999999996
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=48.64 E-value=5.9 Score=35.06 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.7
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999986
No 296
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=48.53 E-value=36 Score=37.16 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+++.|+..| ..+..-+. .++..+++.|++ |+-.||+|.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g--------~~v~~lHg--~eR~~v~~~F~~----g~~~VLVaT 463 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG--------KRVIQLNR--KSYDTEYPKCKN----GDWDFVITT 463 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT--------CCEEEECS--SSHHHHGGGGGT----CCCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC--------CeEEEeCh--HHHHHHHHHHHC----CCceEEEEC
Confidence 47889999999999999999987532 23333333 367778888875 456777764
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.46 E-value=6.3 Score=34.43 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.8
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++.+|+|+|||-
T Consensus 4 ~I~i~G~~GsGKST 17 (181)
T 1ly1_A 4 IILTIGCPGSGKST 17 (181)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEecCCCCCHHH
Confidence 57899999999997
No 298
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=48.44 E-value=15 Score=43.21 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.7
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccch
Q 007505 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (601)
Q Consensus 38 ~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~ 78 (601)
-+|-|+.|||||...+.-+...+...+.+. +|++.+|.+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~-~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGK-PIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSS-CEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCC-cEEEEecCcc
Confidence 478999999999987764433333444446 8999966553
No 299
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=48.38 E-value=7.3 Score=35.75 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCcEEEEccCCChhHH
Q 007505 26 LELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 26 ~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
..|-=.+..|+.+.+-+|+|+|||-
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp --------CCCCEEEECSTTSSHHH
T ss_pred cCCceecCCCCEEEEECCCCCCHHH
Confidence 3444456678899999999999986
No 300
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=48.38 E-value=11 Score=32.12 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=19.4
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHh
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~ 62 (601)
+..+|-+|+|+|||- |+-|+.|+..
T Consensus 24 g~~~I~G~NGsGKSt--il~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSS--LLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 467889999999998 4556777663
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.37 E-value=5.7 Score=35.85 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=14.2
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++++|.|+|||-
T Consensus 4 ~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 4578999999999997
No 302
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=48.31 E-value=14 Score=37.23 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=31.1
Q ss_pred EEcCeeeeCCCCCCCHH-----HHHHHHHHHHHH---hhcCcEEEEccCCChhHHHH
Q 007505 4 KLEDVTVYFPYDNIYPE-----QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 4 ~i~~~~~~fp~~~~r~~-----Q~~~~~~v~~~l---~~~~~~~~EapTGtGKTla~ 52 (601)
.++++...||-+..+.. ..+.--.+.+.+ ..|+.+.+=+|+|+|||--.
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 45677778887643333 222333333433 35788999999999999844
No 303
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.48 E-value=8.5 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
..++|-+|||+|||-..
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35788999999999733
No 304
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.47 E-value=6.8 Score=35.38 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.0
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++++|.|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CSCEEEEEESTTSSHHH
T ss_pred cCCEEEEEcCCCCCHHH
Confidence 45689999999999997
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.41 E-value=5.8 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=14.1
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT 20 (193)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999997
No 306
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=47.28 E-value=13 Score=37.58 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.8
Q ss_pred hcCcEEEEccCCChhHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~ 52 (601)
.+.++++.+++|||||+.+
T Consensus 159 ~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVA 177 (387)
T ss_dssp CCSCEEEECSTTSSHHHHH
T ss_pred CCCCeEEecCCCcCHHHHH
Confidence 4568999999999999743
No 307
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=47.02 E-value=7.1 Score=35.90 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=15.3
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.|..+++|+|.|+|||-
T Consensus 4 ~g~~i~~eG~~g~GKst 20 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTT 20 (216)
T ss_dssp CCCEEEEEECSSSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 56789999999999987
No 308
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=46.69 E-value=12 Score=37.45 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHhh---c--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKRALDA---K--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~--~~~~~EapTGtGKTla~L 53 (601)
...|.++.+.|...+.. | ..++.-+.||+|||....
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 56898888887754442 3 357888999999998665
No 309
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.62 E-value=8 Score=35.13 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=15.9
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..+..++++++.|+|||-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 4456789999999999986
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.59 E-value=7.7 Score=33.90 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.0
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++.+|.|+|||-
T Consensus 3 ~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999997
No 311
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=46.47 E-value=12 Score=37.07 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHhh---c--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKRALDA---K--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~--~~~~~EapTGtGKTla~L 53 (601)
-..|.+.-+.|...+.. | ..++.-+.||+|||....
T Consensus 64 ~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 56788888877665543 3 357888999999999775
No 312
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=46.40 E-value=32 Score=35.32 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEE-EEEccc
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kv-v~~t~T 76 (601)
..+++-+|+|+|||-...- |+..... .+. +| ++++-|
T Consensus 101 ~vIlivG~~G~GKTTt~~k--LA~~l~~-~G~-kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK--LARYFQK-RGY-KVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH--HHHHHHT-TTC-CEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHH--HHHHHHH-CCC-eEEEEeCCC
Confidence 3688899999999985443 3333322 245 55 455443
No 313
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=46.25 E-value=37 Score=30.86 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.9
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++|+|.|+|||-
T Consensus 5 ~g~~i~~eG~~gsGKsT 21 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKST 21 (213)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CceEEEEEcCCCCCHHH
Confidence 46689999999999986
No 314
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=46.10 E-value=6.9 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=15.2
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++++|.|+|||-
T Consensus 8 ~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCEEEEEESTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46789999999999997
No 315
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=46.03 E-value=13 Score=37.74 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHh---hc--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKRALD---AK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~---~~--~~~~~EapTGtGKTla~L 53 (601)
-..|.+.-+.|...+. +| ..++.-+.||+|||....
T Consensus 119 ~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4678777766654333 34 357788999999999875
No 316
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=45.95 E-value=7.6 Score=34.55 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.5
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (197)
T 2z0h_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999986
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=45.94 E-value=7.7 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.0
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++++|.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4578999999999996
No 318
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=45.85 E-value=25 Score=41.24 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=30.4
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhC--------C-CCCcEEEEEcccchhHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSK--------P-ENPVKLIYCTRTVHEMEK 82 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~--------~-~~~~kvv~~t~T~~~~~q 82 (601)
+..+|+|+-|||||...-.=.+...... + ... +|++.|=|++-...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~-~ILvvTFT~aAA~E 71 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVE-ELLVVTFTEAATAE 71 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGG-GEEEEESCHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHH-HEEEEeccHHHHHH
Confidence 4569999999999986554444433321 1 123 89999999764443
No 319
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=45.81 E-value=6.3 Score=36.60 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=12.8
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..+..+++|+|.|+|||-
T Consensus 23 ~~g~~I~~eG~~GsGKsT 40 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTT 40 (227)
T ss_dssp CCCCEEEEECCC---CHH
T ss_pred cCCeEEEEECCCCCCHHH
Confidence 457789999999999986
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.75 E-value=6.7 Score=34.75 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.8
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++++|+|+|||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3468999999999987
No 321
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=45.59 E-value=16 Score=37.80 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.0
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.++.+|||++|....+.+++.++..| ..+..-+. .++..+++.|++ |+..||+|+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g--------~~v~~lh~--~~R~~~~~~f~~----g~~~iLVaT 243 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAG--------KKVIQLNR--KSYDTEYPKCKN----GDWDFVITT 243 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTT--------CCEEEEST--TCCCCCGGGSSS----CCCSEEEES
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcC--------CcEEecCH--HHHHHHHhhccC----CCceEEEEC
Confidence 37899999999999999999987542 23333333 234445666654 566777764
No 322
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=45.50 E-value=10 Score=37.35 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHh---hcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKRALD---AKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~---~~~--~~~~EapTGtGKTla~L 53 (601)
...|.+..+.|...+. +|- .++.-+.||+|||....
T Consensus 59 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 59 QASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 5678877765433222 343 57788999999998764
No 323
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=45.46 E-value=8.7 Score=33.34 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.3
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++-+|.|+|||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5679999999999986
No 324
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=45.28 E-value=15 Score=38.92 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=15.9
Q ss_pred cCcEEEEccCCChhHHHHH
Q 007505 35 KGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L 53 (601)
+.++++-+|+|||||...-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997443
No 325
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.94 E-value=5.2 Score=35.54 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.3
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..+..+++-+|.|+|||-
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 4567789999999999996
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=44.80 E-value=5.2 Score=36.98 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=12.0
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..|..+.+-+|+|+|||-
T Consensus 24 v~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp EECCCEEEEECSCC----C
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3456789999999999996
No 327
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=44.80 E-value=7.4 Score=43.63 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=14.8
Q ss_pred cCcEEEEccCCChhHHH
Q 007505 35 KGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla 51 (601)
+..+++.+|+|||||..
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999973
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=44.64 E-value=9.4 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.7
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+.+-+|+|+|||-
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3567899999999996
No 329
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=44.45 E-value=20 Score=32.80 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=28.1
Q ss_pred hhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
..|..-++-+|-|+|||..+|--+..+..+ +. ++++.++..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~-kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA---KQ-KVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc---CC-ceEEEEecc
Confidence 456788999999999998777655444432 45 777776653
No 330
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=44.44 E-value=37 Score=30.91 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=15.0
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.|..+++|+|.|+|||-
T Consensus 2 ~g~~i~~eG~~gsGKsT 18 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTT 18 (213)
T ss_dssp CCCEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 36789999999999987
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=44.25 E-value=8.8 Score=33.98 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=14.8
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+.++++.+|+|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 9 KGINILITGTPGTGKTS 25 (184)
T ss_dssp SSCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 35679999999999997
No 332
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.14 E-value=8.6 Score=35.40 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.8
Q ss_pred HHhhcCcEEEEccCCChhHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTl 50 (601)
.+..|..+++-+|.|+|||-
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 34578899999999999997
No 333
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=44.10 E-value=11 Score=41.98 Aligned_cols=15 Identities=53% Similarity=0.671 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
+.+++.+|+|||||+
T Consensus 239 ~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 239 RGILLYGPPGTGKTL 253 (806)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 369999999999998
No 334
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=44.09 E-value=71 Score=30.75 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=40.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 532 ~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
++.+|||+++....+.+.+.+...| ..+..-+.+ ..++..+++.|+. |+..||+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g--------~~~~~lhg~l~~~~r~~~~~~f~~----g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLG--------HPAQALHGDMSQGERERVMGAFRQ----GEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTT--------CCEEEECSCCCTHHHHHHHHHHHH----TSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC--------CCEEEEeCCCCHHHHHHHHHHhhc----CCceEEEEe
Confidence 7899999999999999999887532 223333333 3456778999987 356677764
No 335
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=44.02 E-value=7.8 Score=38.04 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=13.7
Q ss_pred cEEEEccCCChhHHHH
Q 007505 37 HCLLEMPTGTGKTIAL 52 (601)
Q Consensus 37 ~~~~EapTGtGKTla~ 52 (601)
.++|-+|||+|||-..
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999733
No 336
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=43.85 E-value=7.8 Score=40.10 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=22.9
Q ss_pred cCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCCh
Q 007505 201 FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI 239 (601)
Q Consensus 201 ~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHnl 239 (601)
...|.++++..+.+..... ..+...++|||||||.+
T Consensus 87 ~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHC---SCCCCCSEEEEETTTCC
T ss_pred CceEEEEChHHHHHHhhCc---ccccCCCEEEEeCCccC
Confidence 4567777666554332221 22456799999999988
No 337
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=43.66 E-value=53 Score=38.34 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=38.5
Q ss_pred hhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHHhh
Q 007505 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~~l 90 (601)
..|....+.+-||+|||+ +++.+. ... ++ +++|.|++..+..|+.+||+.+
T Consensus 15 ~~~~~~~l~G~~gs~ka~--~~a~l~--~~~--~~-p~lvv~~~~~~A~~l~~el~~f 65 (1151)
T 2eyq_A 15 KAGEQRLLGELTGAACAT--LVAEIA--ERH--AG-PVVLIAPDMQNALRLHDEISQF 65 (1151)
T ss_dssp STTCBCCBCCCCTTHHHH--HHHHHH--HSS--SS-EEEEEESSHHHHHHHHHHHGGG
T ss_pred CCCCeEEEeCCchHHHHH--HHHHHH--Hhh--CC-CEEEEeCCHHHHHHHHHHHHhh
Confidence 344446788999999998 333332 222 46 8999999999999999999987
No 338
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=43.61 E-value=6.3 Score=39.66 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.2
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..++.+++-+|||+|||-
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 4557789999999999986
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.58 E-value=9 Score=34.37 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=13.5
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++++|+|+|||-
T Consensus 21 ~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGT 35 (201)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 368999999999997
No 340
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.27 E-value=8.3 Score=36.34 Aligned_cols=14 Identities=43% Similarity=0.370 Sum_probs=12.5
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++-+|||+|||-
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 47889999999997
No 341
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.18 E-value=9 Score=33.14 Aligned_cols=15 Identities=33% Similarity=0.363 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
+++++.++.|+|||-
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 579999999999997
No 342
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=42.92 E-value=36 Score=31.30 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.9
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++|+|.|+|||-
T Consensus 25 ~g~~i~i~G~~GsGKsT 41 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTT 41 (229)
T ss_dssp CCEEEEEECCTTSCHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 45689999999999987
No 343
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=42.85 E-value=21 Score=35.86 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=26.1
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccc
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~ 77 (601)
.+.|.++-+|||+|||...-.-+.. ... .+. +|++.-+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~-~~~--~~~-~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR-EYM--QGS-RVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH-HHT--TTC-CEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH-HHH--CCC-EEEEEeCCc
Confidence 5679999999999999754332222 222 255 787776553
No 344
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=42.85 E-value=7 Score=40.67 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHhhccc-CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 524 LVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 524 i~~~~~~~-~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
+.+++... .+.++||++|....+.+++.+...|+-. .++--..+..++..+++.|++ |+..||+|+
T Consensus 324 l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v------~~lh~~~~~~~R~~~~~~f~~----g~~~iLv~T 390 (479)
T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV------ALLSGEMMVEQRAAVIERFRE----GKEKVLVTT 390 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccE------EEecCCCCHHHHHHHHHHHHc----CCCcEEEEc
Confidence 34444443 4689999999999999999887543210 111111122345678888886 345566653
No 345
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=42.84 E-value=9.3 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.2
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++.+|.|+|||-
T Consensus 28 ~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46789999999999996
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.83 E-value=15 Score=32.92 Aligned_cols=27 Identities=19% Similarity=0.031 Sum_probs=19.4
Q ss_pred HHHHHHHHHhh-----cCcEEEEccCCChhHH
Q 007505 24 YMLELKRALDA-----KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 24 ~~~~v~~~l~~-----~~~~~~EapTGtGKTl 50 (601)
.+..+.+.+.. +..+.+.+|.|+|||-
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTT 37 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHH
Confidence 44555555543 3478899999999986
No 347
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=42.79 E-value=9.2 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.0
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
...+++++|+|+|||-
T Consensus 16 ~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3579999999999996
No 348
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=42.33 E-value=8.1 Score=33.90 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.5
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..++++++.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35678899999999986
No 349
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=42.13 E-value=5.8 Score=34.77 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.6
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..|..+.+-+|.|+|||-
T Consensus 7 ~~gei~~l~G~nGsGKST 24 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKST 24 (171)
T ss_dssp ESSEEEEEECCTTSCHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 356788999999999997
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=42.07 E-value=8.1 Score=35.72 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=14.1
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
|..+.+++|.|+|||-
T Consensus 20 g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CEEEEEECSTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999996
No 351
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=42.07 E-value=25 Score=32.40 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=19.6
Q ss_pred HHhhcCcEEEEccCCChhHHHHHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L~ 54 (601)
.+..|+.+.+-+|+|+|||--..+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 566788999999999999974443
No 352
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=42.05 E-value=12 Score=41.81 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=15.9
Q ss_pred CcEEEEccCCChhHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITS 58 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~ 58 (601)
+.+++.+|+|||||+ |.-+++
T Consensus 512 ~gvLl~GPPGtGKT~--lAkaiA 532 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL--LAKAIA 532 (806)
T ss_dssp SCCEEESSTTSSHHH--HHHHHH
T ss_pred ceEEEecCCCCCchH--HHHHHH
Confidence 358999999999997 433443
No 353
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.99 E-value=12 Score=37.46 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.5
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHh
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~ 62 (601)
+.-++-+|||.|||- |+=|+.|+..
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 578899999999998 5667888654
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=41.82 E-value=9.6 Score=33.69 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=12.5
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999996
No 355
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=41.73 E-value=14 Score=35.79 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=21.7
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
..+.+-+|+|+|||-.. ..|+.... ++++ +|.+...
T Consensus 101 ~vi~lvG~nGsGKTTll--~~Lag~l~-~~~g-~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL--GKLAHRLK-NEGT-KVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHH-HTTC-CEEEECC
T ss_pred cEEEEEcCCCCCHHHHH--HHHHHHHH-HcCC-eEEEEee
Confidence 46778999999999733 22332222 2345 6766654
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.73 E-value=10 Score=34.58 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.8
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 5 KHNLILIGAPGSGKGT 20 (217)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3468999999999997
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=41.64 E-value=11 Score=32.72 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=13.4
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++.+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 468999999999997
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=41.44 E-value=8.5 Score=34.01 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=14.1
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..++++++.|+|||-
T Consensus 13 ~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4578999999999986
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.33 E-value=9.4 Score=34.23 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=13.3
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++++|.|+|||-
T Consensus 16 ~~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368999999999996
No 360
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=41.21 E-value=4.9 Score=36.50 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHh----hcCcEEEEccCCChhHH
Q 007505 23 SYMLELKRALD----AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 23 ~~~~~v~~~l~----~~~~~~~EapTGtGKTl 50 (601)
+++..+.+.+. .+..+.|-+|+|+|||-
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 35555555543 34578899999999985
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=41.12 E-value=6.1 Score=35.77 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.5
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57899999999986
No 362
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=41.09 E-value=16 Score=32.98 Aligned_cols=26 Identities=27% Similarity=0.127 Sum_probs=20.7
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhC
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~ 63 (601)
+.-+|-+|+|+|||- |+-|+.|+...
T Consensus 24 ~~~~I~G~NgsGKSt--il~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSS--LLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHH--HHHHHHHHhcC
Confidence 467889999999997 55678887754
No 363
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=40.91 E-value=9.8 Score=35.48 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=15.1
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+++|+|.|+|||-
T Consensus 26 ~~~~i~~eG~~GsGKsT 42 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKST 42 (236)
T ss_dssp CCCEEEEEESTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46789999999999997
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.84 E-value=9.6 Score=34.56 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.4
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++.+|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999997
No 365
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.83 E-value=17 Score=31.81 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.0
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~ 61 (601)
+..+|-+|+|+|||- |+-||.++.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 378899999999997 555677765
No 366
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.75 E-value=9.4 Score=33.69 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.4
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++++|+|+|||-
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368899999999997
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=40.68 E-value=9.7 Score=34.57 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.4
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++.+|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999997
No 368
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=40.58 E-value=67 Score=32.48 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhc-ccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEec---------CCchhHHHHHHHHHHh
Q 007505 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (601)
Q Consensus 518 ~~l~~~i~~~~~-~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~fk~~ 587 (601)
..+.+.+.+... ..++.+|||+++...++.+.+.++..| .+...+-+ -...++..++++|++
T Consensus 346 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~- 417 (494)
T 1wp9_A 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG-------IKAKRFVGQASKENDRGLSQREQKLILDEFAR- 417 (494)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT-------CCEEEECCSSCC-------CCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC-------CCcEEEeccccccccccCCHHHHHHHHHHHhc-
Confidence 445555555443 346789999999999999999997642 23344433 123457789999997
Q ss_pred cCCCCCeEEEEE
Q 007505 588 CDCGRGAVFFSV 599 (601)
Q Consensus 588 ~~~~~gaiLfaV 599 (601)
|+..||+|+
T Consensus 418 ---~~~~vLv~T 426 (494)
T 1wp9_A 418 ---GEFNVLVAT 426 (494)
T ss_dssp ---TSCSEEEEC
T ss_pred ---CCceEEEEC
Confidence 345677775
No 369
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=40.49 E-value=11 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=13.8
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++.+|.|+|||-
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 479999999999997
No 370
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=40.32 E-value=11 Score=38.27 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
..++|-+|||+|||-..
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 35788999999999633
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=40.19 E-value=9.9 Score=34.90 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.6
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999997
No 372
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=40.10 E-value=8.6 Score=33.70 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=10.2
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..++++++.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 5 SPIIWINGPFGVGKTH 20 (183)
T ss_dssp CCEEEEECCC----CH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999997
No 373
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=40.00 E-value=9.1 Score=36.17 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.1
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++|++.|+|||-
T Consensus 24 ~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 24 IKKISIEGNIAAGKST 39 (263)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999996
No 374
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=39.97 E-value=21 Score=35.45 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
+..|.++-+.+. +.+-+|. .++.-+.||+|||....
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 456887766553 3333443 57788999999999764
No 375
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=39.89 E-value=25 Score=35.11 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH----HHhhcC--cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~----~l~~~~--~~~~EapTGtGKTla~L 53 (601)
..|.+..+.+.. .+-+|- .++.-+.||+|||....
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 578888776543 222343 57778899999998664
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.70 E-value=10 Score=37.53 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.1
Q ss_pred CcEEEEccCCChhHHHH
Q 007505 36 GHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~ 52 (601)
..++|-+|||+|||-..
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 36889999999999733
No 377
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=39.69 E-value=27 Score=34.86 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 23 SYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 23 ~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
++...+...-.....+++.+++||||++
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~ 167 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEI 167 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHH
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHH
Confidence 3333333333445678999999999986
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=39.65 E-value=11 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHhhcCcEEEEccCCChhHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTl 50 (601)
.+..|+.+.+-+|.|+|||-
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 56788899999999999996
No 379
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=39.51 E-value=26 Score=32.44 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=27.9
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
.+...++-+|.|.|||-++|--+..+.. .+. ||++.++.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~-kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQY-KCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTC-CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-eEEEEeec
Confidence 3667888899999999988866555433 246 77777544
No 380
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=39.48 E-value=9.9 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.1
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++.+|.|+|||-
T Consensus 8 g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSA 23 (175)
T ss_dssp SEEEEEECSTTSCHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4578999999999986
No 381
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=39.14 E-value=9.8 Score=41.37 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred hccCcEEEecCccccCHHhhhHhhhccCCCcEEEEeCCCChH
Q 007505 199 VQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240 (601)
Q Consensus 199 ~~~adivv~n~~~ll~~~~~~~~~~~l~~~~ilIiDEAHnl~ 240 (601)
...++|+|+++..|+. .. ...+.+.++|||||||.+.
T Consensus 295 ~~~~~IlV~TPGrLl~----~~-~l~l~~l~~lVlDEAH~l~ 331 (666)
T 3o8b_A 295 TTGAPVTYSTYGKFLA----DG-GCSGGAYDIIICDECHSTD 331 (666)
T ss_dssp CCCCSEEEEEHHHHHH----TT-SCCTTSCSEEEETTTTCCS
T ss_pred cCCCCEEEECcHHHHh----CC-CcccCcccEEEEccchhcC
Confidence 4568999999887641 11 1123468999999999764
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=39.06 E-value=9.6 Score=36.01 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.0
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
...+++++++|+|||-
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 3478999999999997
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=38.73 E-value=10 Score=34.38 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=12.5
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999986
No 384
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=38.61 E-value=1.9e+02 Score=33.57 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=38.7
Q ss_pred hcccCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeE-EecCCchhHHHHHHHHHHhcCCCCCeEEEE
Q 007505 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF-IETQDVVETTLALDNYRKACDCGRGAVFFS 598 (601)
Q Consensus 528 ~~~~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if-~E~~~~~~~~~~l~~fk~~~~~~~gaiLfa 598 (601)
++..++.+|||++|-...+.+++.++..|+ .+. .- .+ +... +++|++ |+-.||+|
T Consensus 305 l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~--------~~~~~l-hg--~rr~-l~~F~~----G~~~VLVa 360 (1104)
T 4ddu_A 305 LEIFRDGILIFAQTEEEGKELYEYLKRFKF--------NVGETW-SE--FEKN-FEDFKV----GKINILIG 360 (1104)
T ss_dssp HHHHCSSEEEEESSSHHHHHHHHHHHHTTC--------CEEESS-SS--HHHH-HHHHHH----TSCSEEEE
T ss_pred HHhcCCCEEEEECcHHHHHHHHHHHHhCCC--------CeeeEe-cC--cHHH-HHHHHC----CCCCEEEE
Confidence 333569999999999999999998875431 222 11 22 2445 999997 56788888
No 385
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=38.28 E-value=1.3e+02 Score=32.54 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=39.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEE
Q 007505 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFS 598 (601)
Q Consensus 532 ~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfa 598 (601)
++.+|||++|-...+.+.+.+++.|+ + +..-+.+ ..++..+++.|+. |+-.||+|
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi-------~-~~~lh~~~~~~~R~~~l~~f~~----g~~~VLVa 501 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGI-------K-VNYLHSEIKTLERIEIIRDLRL----GKYDVLVG 501 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------C-EEEECTTCCHHHHHHHHHHHHH----TSCSEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCC-------C-eEEEeCCCCHHHHHHHHHHHhc----CCeEEEEe
Confidence 56899999999999999999987542 2 3332332 3456778999986 45567776
No 386
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=38.19 E-value=20 Score=35.59 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHH----HHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++-+.+.. .+-+|. .++.-+.||+|||....
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 4578877765433 333443 57888999999999764
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.84 E-value=12 Score=32.31 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=12.6
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.++++++.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 47899999999996
No 388
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=37.60 E-value=70 Score=28.36 Aligned_cols=70 Identities=6% Similarity=0.033 Sum_probs=45.1
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHh-hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHH
Q 007505 10 VYFPYDNIYPEQYSYMLELKRALD-AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (601)
Q Consensus 10 ~~fp~~~~r~~Q~~~~~~v~~~l~-~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~ 83 (601)
+.||-.+ -|-+.-....+.-.+. .....+|.++-|++|+-..+-..+..+... |+ +|.+.++|..-...+
T Consensus 26 ~~~~~~~-~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr-~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 26 TVHPEKS-VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GR-EVQIIAADRRSQMNM 96 (189)
T ss_dssp CCCGGGC-CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TC-CEEEECSTTHHHHHH
T ss_pred ccCCcCc-cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--Ce-EEEEEcCchHHHHHH
Confidence 3465433 1333333333433333 456899999999999998665555556655 78 999999998765443
No 389
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=37.32 E-value=23 Score=33.43 Aligned_cols=48 Identities=10% Similarity=-0.049 Sum_probs=24.2
Q ss_pred cCcEEEEccCCChhH-HHHHHHHHHHHHhCCCCCcEEEEEcccchhHHHHHHHHH
Q 007505 35 KGHCLLEMPTGTGKT-IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (601)
Q Consensus 35 ~~~~~~EapTGtGKT-la~L~~~l~~~~~~~~~~~kvv~~t~T~~~~~q~~~el~ 88 (601)
+...++.+++|+||| +++-. +..+... |. +++|.|=..+. +|+++..+
T Consensus 21 gs~~li~g~p~~~~~~l~~qf--l~~g~~~--Ge-~~~~~~~~e~~-~~l~~~~~ 69 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYI--LSRKLKS--DN-LVGMFSISYPL-QLIIRILS 69 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHH--HHHHHHT--TC-EEEEEECSSCH-HHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHH--HHHHHHC--CC-cEEEEEEeCCH-HHHHHHHH
Confidence 456788755555555 44333 2222222 56 77777654433 24444333
No 390
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.12 E-value=24 Score=34.56 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhcC------cEEEEccCCChhHH
Q 007505 21 QYSYMLELKRALDAKG------HCLLEMPTGTGKTI 50 (601)
Q Consensus 21 Q~~~~~~v~~~l~~~~------~~~~EapTGtGKTl 50 (601)
..+-...+...+.++. .+-+-+|+|+|||-
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKST 107 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKST 107 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHH
Confidence 3444555555565554 67889999999997
No 391
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=36.69 E-value=11 Score=34.18 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.0
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
++.+++|++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 3578999999999997
No 392
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=36.67 E-value=21 Score=36.22 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHH----HHHhhc--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~--~~~~~EapTGtGKTla~L 53 (601)
...|.++-+.+. +.+-+| ..++.-+.||+|||....
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 567887766543 333334 357788899999998765
No 393
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=36.20 E-value=14 Score=32.99 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=15.3
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..+..+++-+|.|+|||-
T Consensus 23 ~~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKST 40 (200)
T ss_dssp SCCEEEEEECSTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 356789999999999996
No 394
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=35.97 E-value=11 Score=34.99 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.8
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++|++.|+|||-
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 3468999999999997
No 395
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=35.96 E-value=19 Score=34.54 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=13.2
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++-+|+|+|||-
T Consensus 34 ~livl~G~sGsGKST 48 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTS 48 (287)
T ss_dssp EEEEEECCTTSCTHH
T ss_pred eEEEEECCCCCCHHH
Confidence 368899999999997
No 396
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=35.62 E-value=41 Score=32.56 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=22.4
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
+..+.+-+|+|+|||-. +..|+.... ++++ +|.+...
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~-~~~g-~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ-NLGK-KVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH-TTTC-CEEEECC
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH-hcCC-EEEEEee
Confidence 45777889999999873 333332222 3355 6666543
No 397
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=35.34 E-value=23 Score=43.58 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=27.2
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccch
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~ 78 (601)
.+.++++-+|+|||||.-.+.-+...+. .+. +++|-+..++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~-~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCC-cEEEEEcccc
Confidence 5678999999999999865543333222 255 6666665543
No 398
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=35.33 E-value=21 Score=35.59 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHH----HHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++.+.+.. .+-+|- .++.-+.||+|||....
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 5678887776543 222343 57788999999998665
No 399
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=35.17 E-value=20 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.8
Q ss_pred hcCcEEEEccCCChhHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L 53 (601)
.+...++.+|+|+|||.-.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567999999999998444
No 400
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=34.08 E-value=26 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.1
Q ss_pred HhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
+..+.+.++.+|+|||||.-.+.-+...+.. +. +++|.+-
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~-~vlYI~t 70 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDA 70 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CC-ceEEEEe
Confidence 4456799999999999999666545544442 44 5555543
No 401
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=34.02 E-value=72 Score=31.46 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhh--c--CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 19 PEQYSYMLELKRALDA--K--GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~--~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
+...+.+..+.+.+.. + ..+++-+++|+|||-- +-.+...... .+. ||.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl--~~~L~~~l~~-~g~-kV~vi 113 (355)
T 3p32_A 59 PDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTA--IEALGMHLIE-RGH-RVAVL 113 (355)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHH--HHHHHHHHHT-TTC-CEEEE
T ss_pred hhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHH--HHHHHHHHHh-CCC-ceEEE
Confidence 4444556666666642 2 2578899999999973 3334333322 245 55444
No 402
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=33.94 E-value=21 Score=35.77 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++.+.+. +.+-+|- .++.-+.||+|||....
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 567887776643 2223343 57788899999998764
No 403
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=33.93 E-value=37 Score=34.69 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=21.6
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEE-EEEccc
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kv-v~~t~T 76 (601)
.+++-+|+|+|||-....-|..++. .++ +| ++++.+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~---~G~-kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK---RGY-KVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH---TTC-CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEecCc
Confidence 5778899999999754433322222 245 56 445444
No 404
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=33.67 E-value=1.7e+02 Score=31.69 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=39.6
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCC--chhHHHHHHHHHHhcCCCCCeEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD--VVETTLALDNYRKACDCGRGAVFFS 598 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~--~~~~~~~l~~fk~~~~~~~gaiLfa 598 (601)
.++.+|||++|-...+.+.+.+.+.|+ + +..-+.+ ..++..+++.|+. |+-.||+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~-~~~lh~~~~~~~R~~~~~~f~~----g~~~VLva 495 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------R-ARYLHHELDAFKRQALIRDLRL----GHYDCLVG 495 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------C-EEEECTTCCHHHHHHHHHHHHT----TSCSEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------C-ceeecCCCCHHHHHHHHHHhhc----CCceEEEc
Confidence 356899999999999999999986542 2 3332332 3456778999975 45567776
No 405
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=33.25 E-value=14 Score=34.14 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=14.2
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++|++.|+|||-
T Consensus 21 ~~~i~~~G~~g~GKst 36 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTT 36 (223)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5579999999999987
No 406
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=33.14 E-value=42 Score=35.25 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=26.6
Q ss_pred HHhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T 76 (601)
.+..|...++-+|+|+|||--... ++.... +.+. +++|.+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~--l~g~~~-~~G~-~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSR--FVENAC-ANKE-RAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHH--HHHHHH-TTTC-CEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH--HHHHHH-hCCC-CEEEEEEe
Confidence 345678899999999999984443 232222 2355 66655443
No 407
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=32.98 E-value=15 Score=36.82 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHH---HHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKR---ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~---~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.+.-+.+.. .+-+|- .++.-+.||+|||....
T Consensus 58 ~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred CCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 5678877665422 222343 57778999999998764
No 408
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=39.23 E-value=9.1 Score=33.37 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHhhccc-CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEec-CCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 524 LVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 524 i~~~~~~~-~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~-~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
+.++++.. ++.+|||+++....+.+.+.++..|+ +...+-+ ....++..+++.|++ |+..||+|+
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~----g~~~vLvaT 87 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE----GRVNVLVAT 87 (170)
Confidence 33444443 45799999999999999998876432 1112211 122345668888885 334455543
No 409
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=32.90 E-value=13 Score=32.80 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.1
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++-+|.|+|||-
T Consensus 3 ~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 467889999999997
No 410
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=32.83 E-value=24 Score=35.46 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHH----HHHhhc--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~--~~~~~EapTGtGKTla~L 53 (601)
...|.++-+.+. +.+-+| ..++.-+.||+|||....
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 567887776543 233334 357888999999998765
No 411
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.72 E-value=17 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHh---hc--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKRALD---AK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~---~~--~~~~~EapTGtGKTla~L 53 (601)
-..|.++-+.|...+. +| ..++.-+.||+|||....
T Consensus 117 ~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 117 LSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 4567776655443332 34 357888999999999764
No 412
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=32.60 E-value=27 Score=34.74 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=23.2
Q ss_pred HHHHHHHHHH----HHHhhc--CcEEEEccCCChhHHHHH
Q 007505 20 EQYSYMLELK----RALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 20 ~Q~~~~~~v~----~~l~~~--~~~~~EapTGtGKTla~L 53 (601)
.|.++-+.+. +.+-+| ..++.-+.||+|||....
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 5877766553 222234 357888999999998765
No 413
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=32.47 E-value=24 Score=35.12 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++.+.+. +.+-+|- .++.-+.||+|||....
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 457877776433 2333343 57788999999998664
No 414
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=32.27 E-value=28 Score=34.85 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHH----HHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~~~EapTGtGKTla~L 53 (601)
-..|.++.+.+.. .+-+|- .++.-+.||+|||....
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 4568777665432 222343 57788999999998665
No 415
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=32.20 E-value=20 Score=35.59 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++.+.+. +.+-+|- .++.-+.||+|||....
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 467888876653 3333443 57788999999998764
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=32.12 E-value=17 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.3
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
...+++.+|.|+|||-
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4689999999999996
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=31.93 E-value=14 Score=33.62 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.8
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+.+++|.|+|||-
T Consensus 4 ~~~I~i~G~~GSGKST 19 (218)
T 1vht_A 4 RYIVALTGGIGSGKST 19 (218)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3468899999999997
No 418
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=31.48 E-value=34 Score=35.06 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHH----HHhhc--CcEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELKR----ALDAK--GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~--~~~~~EapTGtGKTla~L 53 (601)
+..|.+..+.+.. .+-+| ..++.-+.||+|||....
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 4578887766543 22234 357888999999998764
No 419
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=31.42 E-value=25 Score=34.76 Aligned_cols=36 Identities=19% Similarity=0.012 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++-+.+. +.+-+|- .++.-+.||+|||....
T Consensus 61 ~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred CcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeec
Confidence 567887776633 2333443 57788999999998763
No 420
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=31.34 E-value=14 Score=34.47 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=27.7
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+-.. ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 4 l~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 4 ITVRNATFTWARSD-PP----TLNGITFSIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EEEEEEEEESCTTS-CC----SEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCC-Cc----eeeeeEEEECCCCEEEEECCCCCCHHH
Confidence 67888888875311 11 112222234467899999999999986
No 421
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=30.92 E-value=12 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=13.7
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+.+.+|+|+|||-
T Consensus 21 ~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT 36 (207)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4568899999999996
No 422
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=30.91 E-value=15 Score=33.05 Aligned_cols=17 Identities=24% Similarity=0.006 Sum_probs=14.3
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+.+-+|+|+|||-
T Consensus 5 ~~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTT 21 (211)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CcEEEEEECCCCCCHHH
Confidence 45578899999999996
No 423
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=30.91 E-value=53 Score=31.76 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L 53 (601)
+.+++-+|+|+|||-...
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 357789999999996433
No 424
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.81 E-value=16 Score=33.19 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.2
Q ss_pred HHhhcCcEEEEccCCChhHHHHH
Q 007505 31 ALDAKGHCLLEMPTGTGKTIALL 53 (601)
Q Consensus 31 ~l~~~~~~~~EapTGtGKTla~L 53 (601)
.+..|+...+-+|+|+|||.-..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 34567789999999999997444
No 425
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=30.66 E-value=23 Score=35.19 Aligned_cols=36 Identities=19% Similarity=0.040 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++-+.+. +.+-+|- .++.-+.||+|||....
T Consensus 67 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 67 TSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 567887766532 3333443 57788999999998764
No 426
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=30.49 E-value=42 Score=32.88 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.9
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+.+-+|+|+|||-
T Consensus 129 g~vi~lvG~nGaGKTT 144 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTT 144 (328)
T ss_dssp SEEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578899999999997
No 427
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=30.49 E-value=1.6e+02 Score=26.50 Aligned_cols=42 Identities=5% Similarity=-0.030 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhc-CcEEEEccCCChhHHHHHH
Q 007505 13 PYDNIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 13 p~~~~r~~Q~~~~~~v~~~l~~~-~~~~~EapTGtGKTla~L~ 54 (601)
+...+.|.+.+++..+......+ ..-++|.+||+|-+..+|.
T Consensus 33 ~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la 75 (221)
T 3dr5_A 33 GLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYIL 75 (221)
T ss_dssp TCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHH
Confidence 33445799999998887655432 2367799999998766554
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=30.48 E-value=29 Score=34.64 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.8
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHh
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLS 62 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~ 62 (601)
..+|-+|||+|||- |+=|+.|+..
T Consensus 25 ~~~i~G~NGaGKTT--ll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSS--LFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHHHhc
Confidence 67799999999995 4456777764
No 429
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=30.46 E-value=20 Score=37.10 Aligned_cols=30 Identities=17% Similarity=-0.178 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhcC-------cEEEEccCCChhHH
Q 007505 20 EQYSYMLELKRALDAKG-------HCLLEMPTGTGKTI 50 (601)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-------~~~~EapTGtGKTl 50 (601)
||...-..+.-++..|. |+++++++|| ||.
T Consensus 217 G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~ 253 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSE 253 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHH
T ss_pred CCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHH
Confidence 45555455555566665 9999999999 998
No 430
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=30.15 E-value=70 Score=32.54 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=40.3
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCCchhHHHHHHHHHHhcCCCCCeEEEEE
Q 007505 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (601)
Q Consensus 531 ~~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~fk~~~~~~~gaiLfaV 599 (601)
.+|.++||++|....+.+++.+++. ...+..-+.+ .+..+++.|++ |+-.||+|+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~--------~~~v~~lhg~--~r~~~~~~f~~----g~~~vLVaT 224 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA--------GKKVLYLNRK--TFESEYPKCKS----EKWDFVITT 224 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT--------TCCEEEESTT--THHHHTTHHHH----SCCSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc--------CCeEEEeCCc--cHHHHHHhhcC----CCCeEEEEC
Confidence 4788999999999999999998753 2334444432 56778999987 456777764
No 431
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=29.97 E-value=32 Score=34.20 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHH----HHhhcC--cEEEEccCCChhHHHHH
Q 007505 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 19 ~~Q~~~~~~v~~----~l~~~~--~~~~EapTGtGKTla~L 53 (601)
..|.+.-+.+.. .+-+|. .++.-+.||+|||....
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 467776665542 222343 57778899999998764
No 432
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=29.92 E-value=24 Score=31.17 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.5
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+.-+++-+|.|+|||-
T Consensus 16 G~gvli~G~SGaGKSt 31 (181)
T 3tqf_A 16 KMGVLITGEANIGKSE 31 (181)
T ss_dssp TEEEEEEESSSSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 3458899999999995
No 433
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=29.89 E-value=22 Score=31.06 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.2
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+++.+|+|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 3 PKAVLVGLPGSGKST 17 (184)
T ss_dssp CSEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 468899999999997
No 434
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=29.69 E-value=16 Score=33.42 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=25.5
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+= .....|-=.+..|+.+.+-+|.|+|||-
T Consensus 11 l~~~~ls~~y~~--------~il~~vsl~i~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 11 LEIRDLSVGYDK--------PVLERITMTIEKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp EEEEEEEEESSS--------EEEEEEEEEEETTCCEEEECCTTSSHHH
T ss_pred EEEEEEEEEeCC--------eEEeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 556666666531 1122222234568899999999999997
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=29.59 E-value=15 Score=34.08 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.5
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..|+.+.+-+|.|+|||-
T Consensus 28 i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 4467899999999999996
No 436
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=29.55 E-value=21 Score=35.42 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=17.9
Q ss_pred hcCcEEEEccCCChhHHHHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLI 56 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~ 56 (601)
.|....+-+|+|+|||--.+.-+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999998555433
No 437
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.43 E-value=41 Score=34.00 Aligned_cols=21 Identities=19% Similarity=-0.059 Sum_probs=17.2
Q ss_pred hcCcEEEEccCCChhHHHHHH
Q 007505 34 AKGHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~ 54 (601)
.+....|-+|+|+|||--.+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 457899999999999985553
No 438
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=29.06 E-value=22 Score=30.78 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=12.7
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++-+|.|+|||-
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 68899999999986
No 439
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.89 E-value=32 Score=33.00 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=12.2
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+.|-+|+|+|||-
T Consensus 33 ii~I~G~sGsGKST 46 (290)
T 1odf_A 33 FIFFSGPQGSGKSF 46 (290)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57789999999986
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=28.86 E-value=16 Score=33.84 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=26.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+-.. ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 7 l~~~~l~~~y~~~~-~~----il~~vsl~i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 7 VVMENVTAFWEEGG-TP----VLKDINFKIERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EEEEEEEECSSTTS-CC----SEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred EEEEEEEEEeCCCC-ce----eeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 56677776664211 11 111222223467889999999999996
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=28.81 E-value=33 Score=34.11 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=21.6
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
..+.+-+|+|+|||-.. ..|+.... ++++ +|.+...
T Consensus 158 ~vi~lvG~nGsGKTTll--~~Lag~l~-~~~G-~V~l~g~ 193 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL--GKLAHRLK-NEGT-KVLMAAG 193 (359)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHH-HTTC-CEEEECC
T ss_pred eEEEEEcCCCChHHHHH--HHHHhhcc-ccCC-EEEEecc
Confidence 46788999999999733 22332222 2245 6766543
No 442
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=28.64 E-value=51 Score=35.20 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=24.2
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
.+.+++.+..|+|||.....-|...+.. |+ ||++.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~-rVLlv 42 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ---GK-RVLLV 42 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC---CC-cEEEE
Confidence 3578889999999998666555555542 45 55543
No 443
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=28.58 E-value=1e+02 Score=35.22 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=22.2
Q ss_pred cccCCeEEEEecCHHHHHHHHHHHHhcc
Q 007505 529 SIVPDGIVCFFVSYSYMDEIIATWNDSG 556 (601)
Q Consensus 529 ~~~~gg~LVfFpSy~~l~~v~~~~~~~~ 556 (601)
....+.++||++|...-+.+.+.+...|
T Consensus 333 ~~~~~~~IVF~~sr~~~e~la~~L~~~~ 360 (997)
T 4a4z_A 333 KRELLPMVVFVFSKKRCEEYADWLEGIN 360 (997)
T ss_dssp HTTCCSEEEECSCHHHHHHHHHTTTTCC
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHhcCC
Confidence 3345789999999999999988886543
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=28.13 E-value=35 Score=42.03 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=28.5
Q ss_pred hcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcccch
Q 007505 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~T~~ 78 (601)
.+.++++.+|+|||||.-.+.-+...++ .+. +++|.|-.+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge-~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1120 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEEcccc
Confidence 5678999999999999866543333332 256 7877776653
No 445
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=27.99 E-value=42 Score=33.81 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=28.9
Q ss_pred CeeeeCCCCCCCHH--HHHHHHHHHHHHh---hcCcEEEEccCCChhHHHH
Q 007505 7 DVTVYFPYDNIYPE--QYSYMLELKRALD---AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 7 ~~~~~fp~~~~r~~--Q~~~~~~v~~~l~---~~~~~~~EapTGtGKTla~ 52 (601)
.+.-.+|.+..++. ..+.--.+.+++. .|+-..|=||.|+|||.-.
T Consensus 142 ~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 142 NLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp GSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred cCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 33445666543343 2233345555554 5788999999999999844
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=27.95 E-value=16 Score=34.14 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=26.8
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.||-.. ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 8 ~~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 8 ITFRNIRFRYKPDS-PV----ILDNINLSIKQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp EEEEEEEEESSTTS-CE----EEEEEEEEEETTCEEEEECSTTSSHHH
T ss_pred eeEEEEEEEeCCCC-cc----eeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 56777777763111 11 122222234467899999999999997
No 447
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=27.81 E-value=1.8e+02 Score=30.78 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcc-c-CCeEEEEecCHHHHHHHHHHHHhcchHHHHhcCCeeEEecCCchh-HHHHHHHHHH
Q 007505 519 NYGKLLVEMVSI-V-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVE-TTLALDNYRK 586 (601)
Q Consensus 519 ~l~~~i~~~~~~-~-~gg~LVfFpSy~~l~~v~~~~~~~~~~~~l~~~k~if~E~~~~~~-~~~~l~~fk~ 586 (601)
.+.+.+.+.++. . .+.+|||+.|-...+.+++.+++.+....-.....+..-+.+..+ +..++++|++
T Consensus 424 ~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~ 494 (590)
T 3h1t_A 424 AFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQE 494 (590)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhC
Confidence 344445444433 2 367999999999999999999764332111112224443444344 7789999997
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.71 E-value=16 Score=33.64 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=26.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+- ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 5 l~~~~l~~~y~~---~~----~l~~vsl~i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 5 LRAENIKKVIRG---YE----ILKGISLSVKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEEECTTSCHHH
T ss_pred EEEEeEEEEECC---Ee----eEeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 567777766631 11 122222234567889999999999996
No 449
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=27.32 E-value=22 Score=35.78 Aligned_cols=36 Identities=31% Similarity=0.245 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHH----HHHhhcC--cEEEEccCCChhHHHHH
Q 007505 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (601)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~~~EapTGtGKTla~L 53 (601)
...|.++.+.+. +.+-+|- .++.-+.||+|||....
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 567888776533 3333443 57778999999998764
No 450
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.32 E-value=23 Score=31.12 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.6
Q ss_pred cEEEEccCCChhHHH
Q 007505 37 HCLLEMPTGTGKTIA 51 (601)
Q Consensus 37 ~~~~EapTGtGKTla 51 (601)
++.+-+|.|+|||--
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999973
No 451
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=27.32 E-value=18 Score=34.26 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=27.1
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+-...++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 18 l~i~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHR----TLKSINFFIPSGTTCALVGHTGSGKST 61 (260)
T ss_dssp EEEEEEEECCTTCCSSC----SEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCCcCc----eeEeeEEEECCCCEEEEECCCCCCHHH
Confidence 56777777665311000 122222234567899999999999997
No 452
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=27.18 E-value=45 Score=29.90 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHhhc--CcEEEEccCCChhHH
Q 007505 18 YPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTI 50 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~--~~~~~EapTGtGKTl 50 (601)
-+...+.+..+.+.+..+ ..+++-+++|+|||-
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTT 45 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTL 45 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHH
Confidence 355666666666666544 357788999999996
No 453
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=27.12 E-value=19 Score=33.51 Aligned_cols=30 Identities=13% Similarity=-0.215 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEccCCChhHHH
Q 007505 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 22 ~~~~~~v~~~l~~~~~~~~EapTGtGKTla 51 (601)
......|.=.+..+..+-+-+|.|+|||-.
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHH
Confidence 344555555666777888999999999973
No 454
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=26.96 E-value=24 Score=32.00 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.6
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+.+-+|+|+|||-
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3568899999999986
No 455
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=26.83 E-value=42 Score=34.07 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhcC--------------------cEEEEccCCChhHH
Q 007505 22 YSYMLELKRALDAKG--------------------HCLLEMPTGTGKTI 50 (601)
Q Consensus 22 ~~~~~~v~~~l~~~~--------------------~~~~EapTGtGKTl 50 (601)
......|.-.+..|+ .+.+-+|+|+|||-
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKST 84 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 84 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHH
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHH
Confidence 345666666677776 88999999999996
No 456
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.62 E-value=27 Score=31.07 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.5
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
|+.+.+-+|.|+|||-
T Consensus 1 G~~i~i~G~nG~GKTT 16 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTT 16 (189)
T ss_dssp CCCEEEESCCSSCHHH
T ss_pred CCEEEEECCCCChHHH
Confidence 3567889999999987
No 457
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=26.40 E-value=39 Score=32.65 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=14.5
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
..+..+.|-+|.|+|||-
T Consensus 78 ~~g~iigI~G~~GsGKST 95 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKST 95 (308)
T ss_dssp CCCEEEEEEECTTSSHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 344578889999999986
No 458
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=26.20 E-value=16 Score=34.10 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=26.2
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+ .. ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 2 l~~~~l~~~y~-~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 2 LSARHVDFAYD-DS-EQ----ILRDISFEAQPNSIIAFAGPSGGGKST 43 (243)
T ss_dssp EEEEEEEECSS-SS-SC----SEEEEEEEECTTEEEEEECCTTSSHHH
T ss_pred EEEEEEEEEeC-CC-Cc----eEEEeEEEEcCCCEEEEECCCCCCHHH
Confidence 45677776663 11 11 122222234467889999999999997
No 459
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=26.17 E-value=1.3e+02 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=21.2
Q ss_pred CcEEEEcc-CCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 36 ~~~~~Eap-TGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
+.++|-++ .|+|||.....-|..++.. ++ ||++.
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~---G~-rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS---DQ-KVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC---CC-cEEEE
Confidence 45555555 6999998666545555542 56 66655
No 460
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=26.05 E-value=35 Score=36.32 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHHHHh----hcCcEEEEccCCChhHHHH
Q 007505 25 MLELKRALD----AKGHCLLEMPTGTGKTIAL 52 (601)
Q Consensus 25 ~~~v~~~l~----~~~~~~~EapTGtGKTla~ 52 (601)
+..+.+.+. ....++|.||.|+|||--.
T Consensus 133 l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 133 VNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp HHHHHHHHTTSTTSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEEcCCCCCHHHHH
Confidence 345555664 2357899999999999743
No 461
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=26.01 E-value=63 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=20.6
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
.++.-.-+|+|||...+--|..++. .|+ ||.+.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~---~G~-rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKA---AGY-RTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHH---TTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCC-CEEEE
Confidence 3555666899999866644444443 256 77763
No 462
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.98 E-value=72 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=19.7
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
.+.+-+|+|+|||-....-|..++. .++ +|.+.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~---~g~-kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE---LGY-KVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH---TTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEE
Confidence 5677799999999744432323332 245 56554
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.86 E-value=19 Score=33.90 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.5
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..|+.+.+-+|.|+|||-
T Consensus 38 i~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCcEEEEECCCCCCHHH
Confidence 4467889999999999997
No 464
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.65 E-value=19 Score=33.89 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=26.4
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+= ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 8 l~i~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 8 LRTENIVKYFGE---FK----ALDGVSISVNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EEEEEEEEEETT---EE----EEEEECCEEETTCEEEEECSTTSSHHH
T ss_pred EEEeeeEEEECC---Ee----eEeeeEEEEeCCCEEEEECCCCCCHHH
Confidence 567777776641 11 122222234567889999999999997
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=25.62 E-value=19 Score=33.75 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.4
Q ss_pred HhhcCcEEEEccCCChhHH
Q 007505 32 LDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTl 50 (601)
+..|+.+.+-+|.|+|||-
T Consensus 23 i~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKST 41 (249)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3467889999999999997
No 466
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.47 E-value=1.5e+02 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=21.1
Q ss_pred CcEEEEcc-CCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 36 ~~~~~Eap-TGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
+.+++-++ .|+|||.....-|..++. .|+ ||++.
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~---~G~-rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQ---AGY-KTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHH---TTC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh---CCC-eEEEE
Confidence 34555554 799999866654555554 256 66654
No 467
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=25.42 E-value=20 Score=33.67 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=26.4
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+= ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 4 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 4 LEIRDLWASIDG---ET----ILKGVNLVVPKGEVHALMGPNGAGKST 44 (250)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECSTTSSHHH
T ss_pred EEEEeEEEEECC---EE----EEeceEEEEcCCCEEEEECCCCCCHHH
Confidence 667777776641 11 112222234568899999999999997
No 468
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=25.41 E-value=1.1e+02 Score=28.86 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhh-cCcE-EEE--ccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 23 SYMLELKRALDA-KGHC-LLE--MPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 23 ~~~~~v~~~l~~-~~~~-~~E--apTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
+.+..+.+.+.. ++.+ +.- +--|+|||.....-|...+. .|+ ||.+.
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~---~G~-rVlli 71 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDK---LNL-KVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHH---TTC-CEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHh---CCC-eEEEE
Confidence 344444444443 3444 444 47899999865543433333 255 66553
No 469
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.31 E-value=20 Score=33.40 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=25.9
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+- ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 7 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 7 LEVQSLHVYYGA---IH----AIKGIDLKVPRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECSTTSSHHH
T ss_pred EEEEeEEEEECC---ee----EEeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 566777766642 11 112222234467889999999999997
No 470
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=25.26 E-value=20 Score=34.00 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.7
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+ . ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 21 l~~~~l~~~y~--~-~~----vl~~vsl~i~~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 21 LSIKDLHVSVE--D-KA----ILRGLSLDVHPGEVHAIMGPNGSGKST 61 (267)
T ss_dssp EEEEEEEEEET--T-EE----EEEEEEEEECTTCEEEEECCTTSSHHH
T ss_pred EEEEeEEEEEC--C-EE----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 56677766663 1 11 112222234567899999999999997
No 471
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=25.21 E-value=20 Score=33.70 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=26.8
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+- . ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 5 l~i~~l~~~y~~-~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 5 LSVENLGFYYQA-E-NF----LFQQLNFDLNKGDILAVLGQNGCGKST 46 (253)
T ss_dssp EEEEEEEEEETT-T-TE----EEEEEEEEEETTCEEEEECCSSSSHHH
T ss_pred EEEeeEEEEeCC-C-Ce----EEEEEEEEECCCCEEEEECCCCCCHHH
Confidence 677777777641 1 11 122222234567889999999999997
No 472
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.20 E-value=23 Score=39.55 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=17.8
Q ss_pred cCcEEEEccCCChhHHHHHHHHHHHH
Q 007505 35 KGHCLLEMPTGTGKTIALLSLITSYV 60 (601)
Q Consensus 35 ~~~~~~EapTGtGKTla~L~~~l~~~ 60 (601)
+.++++.+|+|||||. |+-+++..
T Consensus 511 ~~~vLL~GppGtGKT~--Lakala~~ 534 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTL--LAKAIANE 534 (806)
T ss_dssp CCCCCCBCCTTSSHHH--HHHHHHHH
T ss_pred CceeEEECCCCCCHHH--HHHHHHHH
Confidence 4679999999999998 33344443
No 473
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.05 E-value=26 Score=31.24 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=12.5
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+.+-+|.|+|||-
T Consensus 3 ~i~i~G~~GsGKST 16 (204)
T 2if2_A 3 RIGLTGNIGCGKST 16 (204)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 47889999999997
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.88 E-value=21 Score=33.87 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=29.1
Q ss_pred CeEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 1 ~~~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
|.+.+.++.+.|+-.... +......|-=.+..|+.+.+-+|.|+|||-
T Consensus 1 ~~l~~~~l~~~y~~~~~~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTPL--EKKALENVSLVINEGECLLVAGNTGSGKST 48 (266)
T ss_dssp CCEEEEEEEEEESTTSTT--CEEEEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred CEEEEEEEEEEecCCCcc--ccceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 557788888877521100 000122222234567889999999999997
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=24.76 E-value=21 Score=32.74 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=14.2
Q ss_pred hhcCcEEEEccCCChhHH
Q 007505 33 DAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 33 ~~~~~~~~EapTGtGKTl 50 (601)
.+.+++++-+|+|+||+-
T Consensus 27 ~k~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGT 44 (217)
T ss_dssp TSCEEEEEECCTTCCHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 344578889999999965
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.72 E-value=28 Score=31.25 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.3
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++|++-|+|||-
T Consensus 2 fI~~EG~DGsGKsT 15 (197)
T 3hjn_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36799999999997
No 477
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=24.57 E-value=18 Score=38.67 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=28.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.++++.+.||-.. ....+.+-=.+..|+.+.+-+|+|+|||-
T Consensus 342 i~~~~v~~~y~~~~-----~~~l~~i~l~i~~G~~~~ivG~sGsGKST 384 (582)
T 3b5x_A 342 VDVKDVTFTYQGKE-----KPALSHVSFSIPQGKTVALVGRSGSGKST 384 (582)
T ss_pred EEEEEEEEEcCCCC-----ccccccceEEECCCCEEEEECCCCCCHHH
Confidence 45566666554211 12344444456678899999999999996
No 478
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.45 E-value=21 Score=33.91 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=26.5
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+-...+ .....|-=.+..|+.+.+-+|.|+|||-
T Consensus 17 l~~~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNV----QVLQGLTFTLYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp EEEEEEEECCTTCTTS----CCEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCCCc----eeeEeeEEEECCCCEEEEECCCCCCHHH
Confidence 5667777666421000 1122222234567899999999999996
No 479
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=23.86 E-value=74 Score=27.67 Aligned_cols=37 Identities=11% Similarity=-0.105 Sum_probs=21.7
Q ss_pred cEEEEccCCChhHHHHHHHHH-HHHHhCCCCCcEEEEEcccch
Q 007505 37 HCLLEMPTGTGKTIALLSLIT-SYVLSKPENPVKLIYCTRTVH 78 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l-~~~~~~~~~~~kvv~~t~T~~ 78 (601)
.+.+-++.|+|||-. +..| .+.... +. +|-+....+.
T Consensus 6 ~i~i~G~sGsGKTTl--~~~L~~~l~~~--g~-~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL--MEKWVAAAVRE--GW-RVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHHT--TC-CEEEEECCC-
T ss_pred EEEEECCCCCCHHHH--HHHHHHhhHhc--CC-eeeEEEeCCC
Confidence 567888999999973 3222 233322 44 6666665543
No 480
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=23.80 E-value=1.2e+02 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=31.4
Q ss_pred cCeeeeCCCCCCCHHHHHHHHHHHHHHhh----cCcEEEEccCCChhHHH
Q 007505 6 EDVTVYFPYDNIYPEQYSYMLELKRALDA----KGHCLLEMPTGTGKTIA 51 (601)
Q Consensus 6 ~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~----~~~~~~EapTGtGKTla 51 (601)
.|..+..|-..+||....+.+.+.+.+.. ...-+++.++|||-...
T Consensus 11 ~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~ 60 (189)
T 3p9n_A 11 GGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGL 60 (189)
T ss_dssp TTCEEECCSCCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHH
T ss_pred CCcEecCCCCCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHH
Confidence 35566666555688888888888888864 34578999999996543
No 481
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=23.70 E-value=27 Score=33.39 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.8
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
.+++.+|+|+|||-
T Consensus 4 ~I~l~G~~GsGKST 17 (301)
T 1ltq_A 4 IILTIGCPGSGKST 17 (301)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999997
No 482
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=23.60 E-value=22 Score=33.96 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=28.1
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.|+.+.|+-.. + ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 8 l~i~~ls~~y~~~~--~----~L~~isl~i~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 8 LKVEELNYNYSDGT--H----ALKGINMNIKRGEVTAILGGNGVGKST 49 (275)
T ss_dssp EEEEEEEEECTTSC--E----EEEEEEEEEETTSEEEEECCTTSSHHH
T ss_pred EEEEEEEEEECCCC--e----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 67888888875321 1 122222234567889999999999997
No 483
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=23.51 E-value=85 Score=27.60 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHhh--cCcEEEEccCCChhHHHHHH
Q 007505 17 IYPEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~--~~~~~~EapTGtGKTla~L~ 54 (601)
|||.-..++..+.+.+.. ...-+++.++|+|-....+.
T Consensus 10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~ 49 (215)
T 4dzr_A 10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIA 49 (215)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHH
T ss_pred CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHH
Confidence 488888999999998863 45689999999997665553
No 484
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=23.21 E-value=76 Score=32.40 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=19.6
Q ss_pred cEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEE
Q 007505 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~ 73 (601)
.+++-+++|+|||-...--|..++.. .|+ ||.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~-kVllv 135 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK--HKK-KVLVV 135 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--SCC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh--cCC-eEEEE
Confidence 45566999999998554333333332 145 55443
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.99 E-value=24 Score=33.38 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=26.2
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+- ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 7 l~i~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 7 LHVIDLHKRYGG---HE----VLKGVSLQARAGDVISIIGSSGSGKST 47 (262)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHH
T ss_pred EEEeeEEEEECC---EE----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 567777776641 11 122222234567889999999999996
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=22.75 E-value=23 Score=34.09 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=14.9
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.|+.+.+-+|.|+|||-
T Consensus 63 ~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46788899999999997
No 487
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.73 E-value=77 Score=30.75 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=24.1
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t~ 75 (601)
..+++-+-.|+|||.....-|...+.. |+ ||++...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~-rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS---GK-KTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEEC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC---CC-cEEEEeC
Confidence 467888899999998666545554542 45 6655543
No 488
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=22.65 E-value=43 Score=32.85 Aligned_cols=26 Identities=27% Similarity=0.127 Sum_probs=19.5
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHHhC
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~~~ 63 (601)
+.-++-+|+|+|||- |+=|+.|+...
T Consensus 24 ~~~~i~G~NGsGKS~--lleAi~~~l~~ 49 (339)
T 3qkt_A 24 GINLIIGQNGSGKSS--LLDAILVGLYW 49 (339)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHhcC
Confidence 466889999999998 44566666643
No 489
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.46 E-value=24 Score=33.73 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=26.9
Q ss_pred eEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 2 ~~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
.+.+.++.+.|+- ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 21 ~l~~~~l~~~y~~---~~----vL~~isl~i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KT----ILKKISWQIAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EEEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred eEEEEeEEEEECC---EE----EEEeeeEEEcCCCEEEEECCCCCcHHH
Confidence 3667777776641 11 122222234567889999999999997
No 490
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=22.36 E-value=33 Score=31.96 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.8
Q ss_pred hcCcEEEEccCCChhHH
Q 007505 34 AKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 34 ~~~~~~~EapTGtGKTl 50 (601)
.+..+.|-+|.|+|||-
T Consensus 26 ~g~~I~I~G~~GsGKST 42 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGT 42 (252)
T ss_dssp TSCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45688999999999996
No 491
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.35 E-value=40 Score=32.78 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.7
Q ss_pred CcEEEEccCCChhHHHHHHHHHHHHH
Q 007505 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (601)
Q Consensus 36 ~~~~~EapTGtGKTla~L~~~l~~~~ 61 (601)
+..++-+|+|+|||- |+-|+.|+.
T Consensus 25 g~~~i~G~NGsGKS~--ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKSN--IIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCSTH--HHHHHHHTS
T ss_pred CcEEEECCCCCcHHH--HHHHHHHHh
Confidence 388999999999998 666777764
No 492
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=22.30 E-value=88 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=13.4
Q ss_pred cEEEEccCCChhHHHHHH
Q 007505 37 HCLLEMPTGTGKTIALLS 54 (601)
Q Consensus 37 ~~~~EapTGtGKTla~L~ 54 (601)
.+++-+|+|+|||-....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456669999999974443
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=22.28 E-value=46 Score=32.97 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=20.2
Q ss_pred HHHHHHHHHHh----hcCc--EEEEccCCChhHHH
Q 007505 23 SYMLELKRALD----AKGH--CLLEMPTGTGKTIA 51 (601)
Q Consensus 23 ~~~~~v~~~l~----~~~~--~~~EapTGtGKTla 51 (601)
++++.+.+.+. .+.. +++-+|.|+|||-.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl 40 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTI 40 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHH
Confidence 44555555553 4554 89999999999973
No 494
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.28 E-value=25 Score=33.28 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=25.8
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.|+ . ++ ....|-=.+..|+.+.+-+|.|+|||-
T Consensus 25 l~i~~l~~~y~--~-~~----vL~~vsl~i~~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 25 IDVHQLKKSFG--S-LE----VLKGINVHIREGEVVVVIGPSGSGKST 65 (263)
T ss_dssp EEEEEEEEEET--T-EE----EEEEEEEEECTTCEEEEECCTTSSHHH
T ss_pred EEEEeEEEEEC--C-EE----EEEeeEEEEcCCCEEEEEcCCCCcHHH
Confidence 56777776663 1 11 112222224467889999999999997
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=22.13 E-value=22 Score=34.57 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=26.3
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHhhcCcEEEEccCCChhHH
Q 007505 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (601)
Q Consensus 3 ~~i~~~~~~fp~~~~r~~Q~~~~~~v~~~l~~~~~~~~EapTGtGKTl 50 (601)
+.+.++.+.||-. .+ ....|-=.+..|+.+.+-+|+|+|||-
T Consensus 54 i~~~~vs~~y~~~--~~----vL~~isl~i~~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 54 IEFENVHFSYADG--RE----TLQDVSFTVMPGQTLALVGPSGAGKST 95 (306)
T ss_dssp EEEEEEEEESSTT--CE----EEEEEEEEECTTCEEEEESSSCHHHHH
T ss_pred EEEEEEEEEcCCC--Cc----eeeeeeEEEcCCCEEEEECCCCchHHH
Confidence 5567777766521 11 122222234467889999999999997
No 496
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=22.10 E-value=24 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=24.5
Q ss_pred HhhcCcEEEEccCCChhHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 007505 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (601)
Q Consensus 32 l~~~~~~~~EapTGtGKTla~L~~~l~~~~~~~~~~~kvv~~t 74 (601)
+..|+.+.+-+|.|+|||- |+-+++=. ..++.+ .|.+--
T Consensus 34 i~~Ge~~~liG~nGsGKST--Ll~~l~Gl-~~p~~G-~I~~~g 72 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKST--LLRLLTGY-LSPSHG-ECHLLG 72 (266)
T ss_dssp EETTCEEEEECCTTSCHHH--HHHHHTSS-SCCSSC-EEEETT
T ss_pred EcCCCEEEEECCCCCcHHH--HHHHHhcC-CCCCCc-EEEECC
Confidence 4467889999999999997 33333211 123445 676653
No 497
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.09 E-value=30 Score=30.60 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=13.1
Q ss_pred CcEEEEccCCChhHH
Q 007505 36 GHCLLEMPTGTGKTI 50 (601)
Q Consensus 36 ~~~~~EapTGtGKTl 50 (601)
..+.|.+|+|+|||-
T Consensus 9 ~~I~i~G~~GsGKST 23 (203)
T 1uf9_A 9 IIIGITGNIGSGKST 23 (203)
T ss_dssp EEEEEEECTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 367889999999997
No 498
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=21.36 E-value=44 Score=36.76 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHH---hhcC--cEEEEccCCChhHHHH
Q 007505 18 YPEQYSYMLELKRAL---DAKG--HCLLEMPTGTGKTIAL 52 (601)
Q Consensus 18 r~~Q~~~~~~v~~~l---~~~~--~~~~EapTGtGKTla~ 52 (601)
...|.++-+.|...+ -+|. .++.-+.||+|||...
T Consensus 441 ~~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 441 EQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp SCCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 456777655443322 2343 5777889999999875
No 499
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.35 E-value=34 Score=30.96 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.9
Q ss_pred cEEEEccCCChhHH
Q 007505 37 HCLLEMPTGTGKTI 50 (601)
Q Consensus 37 ~~~~EapTGtGKTl 50 (601)
++++-+|+|+||+-
T Consensus 2 ~Iil~GpPGsGKgT 15 (206)
T 3sr0_A 2 ILVFLGPPGAGKGT 15 (206)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46888999999975
No 500
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=21.24 E-value=27 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=14.1
Q ss_pred cCcEEEEccCCChhHH
Q 007505 35 KGHCLLEMPTGTGKTI 50 (601)
Q Consensus 35 ~~~~~~EapTGtGKTl 50 (601)
+..+++|+|-|+|||-
T Consensus 7 ~~fI~~EG~dGaGKTT 22 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKST 22 (334)
T ss_dssp EEEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999997
Done!