Citrus Sinensis ID: 007506

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-

MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR

ccccccccccccccccccccccccccEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccccHHHHccccccccccccc

ccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccEEcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHEEEEEcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEHHHHHHHcccccHHHHHHccccccEccccc

maknsetsameiddkksinsdqigpkFSINVLQLLKSAQmqhglrhgdytrYRRYCTARLRRLYKSLKfthgrgkytrkaiTESTVTEVRFLHLVLYTAERAWSHAmekrqlpdgpnaRQRIYLIGRLRKAVKWATLFSNLcaikadprtsLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELgkygdvenQVLCRERVEELEPSIRYCLHkigesnvktsellqigemegpaldLFKSKLEAVMAEARSQQAASLTEFhwlghrfpisnaKTRVAILKAQELEKDLHVKaadslpaekKLVIFDKIFTAYHEARGCIrsdlasagnaenvkdDLFGLDKAVSAVLGQRTIERNQLLVSIVKgkltkqrddktgkvtkpeELVRLYDLLLQNTADLSDLvssgrerkpeevKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKEcrsnsciehakgiMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYesavgdsnvkgaarieafppafqsiarnpivldlaynfidfpslenrmKKDRKGFISRLWR

maknsetsameiddkksinsdqigPKFSINVLQLLKSAQmqhglrhgdytryRRYCTARLRRLYkslkfthgrgkytrkaitestvteVRFLHLVLYTAERAWSHAmekrqlpdgpnaRQRIYLIGRLRKAVKWATLFSNLcaikadprTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELgkygdvenqVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHvkaadslpaekkLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVlgqrtiernqllvsivkgkltkqrddktgkvtkpeelVRLYDLLLQNTADLSDLvssgrerkpeevkfaeecelkslaFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMveekasenlsnkistvsisgtgkKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFidfpslenrmkkdrkgfisrlwr

MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDytryrryctarlrrlyKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR

*************************KFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAM**********ARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMA******AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKL***************ELVRLYDLLLQNTADL****************FAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDF********MMIEELKTLCKECRSNSCIEHAKGIMV*************TVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSL*****************

***************************SINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLY***************AITESTVTEVRFLHLVLYTAERAWSH*******************IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLH************************************************HWLGHRFPISNAKTRVAILKAQELE*****************VIFDKIFTAYHEARGC******************FGLDKAVSAVLGQRTIERNQLLVSI*********************LVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA***********************LCKECRSNSCIEHAKGIMVEE*************************LLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFI***************FISRLWR

***********IDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVM********ASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR

***********************GPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTK*****TGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKIS*V*********DKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		601	2.2.26 [Sep-21-2011]
Q00004		622	Signal recognition partic	yes	no	0.916	0.885	0.340	4e-84
Q9UHB9		627	Signal recognition partic	yes	no	0.918	0.880	0.339	9e-84
Q8BMA6		625	Signal recognition partic	yes	no	0.906	0.872	0.342	2e-82
Q9VSS2		604	Signal recognition partic	yes	no	0.891	0.887	0.309	1e-66
Q20822		622	Probable signal recogniti	yes	no	0.911	0.881	0.283	1e-51
Q1ZXE8		614	Signal recognition partic	yes	no	0.935	0.915	0.254	1e-42
O74436		597	Signal recognition partic	yes	no	0.309	0.311	0.261	0.0002

>sp\|Q00004\|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris GN=SRP68 PE=1 SV=1	Back alignment and function desciption

 Score =  312 bits (800), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 203/597 (34%), Positives = 325/597 (54%), Gaps = 46/597 (7%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 50  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 168

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct: 169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  +    A +   E K  +F+ + +   
Sbjct: 287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI----AQAESEETKERLFESMLSECR 342

Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSI 367
           +A   +R +L              +G   N++     L   ++ +     I RN+ +   
Sbjct: 343 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQ----YLHSYLTYIKLSTAIRRNENMAKG 398

Query: 368 VKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
           ++  L +Q +D++ +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK
Sbjct: 399 LQKALQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLK 453

Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTL 487
           +L F+A RCF++A+SY L  K +EA  LY R   +A     D     NS + +  +++ L
Sbjct: 454 TLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-PDVQEL 512

Query: 488 CKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDS 547
             + RS  C   A  I+    AS++   + S+        K +K L+E+ + +   +  S
Sbjct: 513 ITQVRSEKCSLQAAAIL---DASDSHQPETSSQV------KDNKPLVERFETF--CLDPS 561

Query: 548 NVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK----GFISRLW 600
            V   A +  FPP FQ I   P+  DLA N + FP LE+++++  K    G+I  ++
Sbjct: 562 LVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKGIF 618

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
Canis familiaris (taxid: 9615)

>sp\|Q9UHB9\|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68 PE=1 SV=2	Back alignment and function description

>sp\|Q8BMA6\|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68 PE=2 SV=2	Back alignment and function description

>sp\|Q9VSS2\|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila melanogaster GN=Srp68 PE=2 SV=1	Back alignment and function description

>sp\|Q20822\|SRP68_CAEEL Probable signal recognition particle 68 kDa protein OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2	Back alignment and function description

>sp\|Q1ZXE8\|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium discoideum GN=srp68 PE=3 SV=1	Back alignment and function description

>sp\|O74436\|SRP68_SCHPO Signal recognition particle subunit srp68 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp68 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		601
255540061		594	Signal recognition particle 68 kDa prote	0.986	0.998	0.839	0.0
224136328		601	predicted protein [Populus trichocarpa]	1.0	1.0	0.830	0.0
224122166		602	predicted protein [Populus trichocarpa]	1.0	0.998	0.818	0.0
225456479		595	PREDICTED: signal recognition particle 6	0.990	1.0	0.813	0.0
356513465		603	PREDICTED: signal recognition particle 6	0.996	0.993	0.786	0.0
357520603		603	Signal recognition particle 68 kDa prote	0.996	0.993	0.777	0.0
356527514		603	PREDICTED: signal recognition particle 6	0.996	0.993	0.784	0.0
297793755		608	hypothetical protein ARALYDRAFT_496370 [	0.995	0.983	0.788	0.0
449476147		594	PREDICTED: signal recognition particle 6	0.985	0.996	0.797	0.0
18424534		605	signal recognition particle subunit SRP6	0.993	0.986	0.784	0.0

>gi\|255540061\|ref\|XP_002511095.1\| Signal recognition particle 68 kDa protein, putative [Ricinus communis] gi\|223550210\|gb\|EEF51697.1\| Signal recognition particle 68 kDa protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1052 bits (2720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/593 (83%), Positives = 547/593 (92%)

Query: 9   AMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK 68
           AM+ID  KS NS+QI P++SINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK
Sbjct: 2   AMDIDGPKSNNSEQISPRYSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK 61

Query: 69  FTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRL 128
           FTHGRGKYTR+AITESTVTEVRFLHLVLY+AERAWSHAMEKRQLPDGPNARQRIYLIGRL
Sbjct: 62  FTHGRGKYTRRAITESTVTEVRFLHLVLYSAERAWSHAMEKRQLPDGPNARQRIYLIGRL 121

Query: 129 RKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188
           RKAV+WA LFS LCA K D RTSLEAEAYA+YM GNLLFEQD+NW+TALKNF SARAVYE
Sbjct: 122 RKAVQWANLFSQLCAAKGDSRTSLEAEAYAAYMNGNLLFEQDRNWDTALKNFISARAVYE 181

Query: 189 ELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKL 248
           ELGKYGD+ENQVLCRERVEELEPSIRYC HKIG+SN++TS+LLQIGEMEGPALDLFK+KL
Sbjct: 182 ELGKYGDLENQVLCRERVEELEPSIRYCRHKIGQSNLQTSDLLQIGEMEGPALDLFKTKL 241

Query: 249 EAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKL 308
           EAVMAEARSQQAASLTEFHWLGH+FPISNAKTRVAILKAQELEKDLH  AADSLPAEKKL
Sbjct: 242 EAVMAEARSQQAASLTEFHWLGHKFPISNAKTRVAILKAQELEKDLHGSAADSLPAEKKL 301

Query: 309 VIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIV 368
           V+FDKIF AYHEAR CIRSDL SAGNA++VKDDL GLDKAVSAVLGQRTIERNQLLVSI 
Sbjct: 302 VVFDKIFAAYHEARSCIRSDLVSAGNADSVKDDLSGLDKAVSAVLGQRTIERNQLLVSIA 361

Query: 369 KGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKS 428
           K K  K+RDDK  K+T+PEELVRLYDLLLQNT+DLSDLVSSGR+ KPEEV F+E+C L+S
Sbjct: 362 KSKFIKRRDDKNEKLTRPEELVRLYDLLLQNTSDLSDLVSSGRDTKPEEVAFSEDCALRS 421

Query: 429 LAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLC 488
           LAFRA+RCFYLA+SYSLAGKRTEAY+LYCRARS +ENAL+ FQ + N+D++M++ELKTL 
Sbjct: 422 LAFRAQRCFYLAKSYSLAGKRTEAYSLYCRARSLSENALQKFQSLNNTDEIMVKELKTLY 481

Query: 489 KECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSN 548
            ECRSNSCIEHA GIM +EKA ENLS K+S +S+SG  KKV+KFLLEKLDVYESAVGD +
Sbjct: 482 NECRSNSCIEHASGIMEDEKAPENLSKKVSAISLSGGDKKVEKFLLEKLDVYESAVGDPH 541

Query: 549 VKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR 601
           VK   RIE FPPAFQ+I RNPI+LDLAYN+IDFPSLENRMKKD+KGFISRLWR
Sbjct: 542 VKAPPRIEVFPPAFQTIPRNPIILDLAYNYIDFPSLENRMKKDKKGFISRLWR 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224136328\|ref\|XP_002322302.1\| predicted protein [Populus trichocarpa] gi\|222869298\|gb\|EEF06429.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224122166\|ref\|XP_002318768.1\| predicted protein [Populus trichocarpa] gi\|222859441\|gb\|EEE96988.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225456479\|ref\|XP_002284577.1\| PREDICTED: signal recognition particle 68 kDa protein [Vitis vinifera] gi\|147791928\|emb\|CAN67894.1\| hypothetical protein VITISV_040392 [Vitis vinifera] gi\|297734504\|emb\|CBI15751.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356513465\|ref\|XP_003525434.1\| PREDICTED: signal recognition particle 68 kDa protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|357520603\|ref\|XP_003630590.1\| Signal recognition particle 68 kDa protein [Medicago truncatula] gi\|355524612\|gb\|AET05066.1\| Signal recognition particle 68 kDa protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356527514\|ref\|XP_003532354.1\| PREDICTED: signal recognition particle 68 kDa protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|297793755\|ref\|XP_002864762.1\| hypothetical protein ARALYDRAFT_496370 [Arabidopsis lyrata subsp. lyrata] gi\|297310597\|gb\|EFH41021.1\| hypothetical protein ARALYDRAFT_496370 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449476147\|ref\|XP_004154654.1\| PREDICTED: signal recognition particle 68 kDa protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18424534|ref|NP_568947.1| signal recognition particle subunit SRP68 [Arabidopsis thaliana] gi|9758397|dbj|BAB08884.1| signal recognition particle 68kD protein-like [Arabidopsis thaliana] gi|15293137|gb|AAK93679.1| putative signal recognition particle protein [Arabidopsis thaliana] gi|19310613|gb|AAL85037.1| putative signal recognition particle protein [Arabidopsis thaliana] gi|332010161|gb|AED97544.1| signal recognition particle subunit SRP68 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		601
TAIR\|locus:2156181		605	AT5G61970 [Arabidopsis thalian	0.993	0.986	0.761	5.1e-241
UNIPROTKB\|A6QQW3		623	SRP68 "Uncharacterized protein	0.911	0.879	0.334	3.5e-75
UNIPROTKB\|F1PI42		618	SRP68 "Signal recognition part	0.911	0.886	0.335	1.2e-74
UNIPROTKB\|Q00004		622	SRP68 "Signal recognition part	0.911	0.881	0.335	1.2e-74
UNIPROTKB\|Q9UHB9		627	SRP68 "Signal recognition part	0.945	0.905	0.327	3.1e-74
MGI\|MGI:1917447		625	Srp68 "signal recognition part	0.945	0.908	0.326	1.4e-73
UNIPROTKB\|F1RW08		624	SRP68 "Uncharacterized protein	0.945	0.910	0.323	3.2e-72
UNIPROTKB\|F1P0P4		602	SRP68 "Uncharacterized protein	0.913	0.911	0.321	1.4e-71
UNIPROTKB\|G3V1U4		589	SRP68 "Signal recognition part	0.798	0.814	0.328	3.3e-69
ZFIN\|ZDB-GENE-040831-3		617	srp68 "signal recognition part	0.945	0.920	0.300	1.7e-68

TAIR\|locus:2156181 AT5G61970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2323 (822.8 bits), Expect = 5.1e-241, P = 5.1e-241
 Identities = 459/603 (76%), Positives = 514/603 (85%)

Query:     3 KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXX 62
             K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGD              
Sbjct:     4 KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query:    63 XXKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
               KSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct:    64 LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query:   123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
             YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct:   124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query:   183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
             ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct:   184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query:   243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
             LFK+K+EA M EARSQQAASLTEF WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct:   244 LFKAKIEAAMEEARSQQAASLTEFSWLGYRFPVSNPKSRVSILKAQELEKELQSPTAESL 303

Query:   303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
             PAEKKL IFDK+FTAYH+AR  IRSDL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct:   304 PAEKKLTIFDKLFTAYHDARNTIRSDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query:   363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
             LLV + K KL ++RDDK  KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct:   364 LLVKVAKSKLNRKRDDKNDKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query:   423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIE 482
             EC+  SLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+  I+
Sbjct:   424 ECQRTSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDEGTIQ 483

Query:   483 ELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVD-KFLLEKLDVYE 541
             ELKTL KECR+NSCIEHA GIM EE+A ENLSN++ST+S++ T  +V+ K+LL+KLDVYE
Sbjct:   484 ELKTLIKECRANSCIEHATGIMEEERAPENLSNRMSTISLNNTAAQVEEKYLLDKLDVYE 543

Query:   542 SAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGF----IS 597
             SAVGDSN K A +IE FPPA QSI RNPIVLDLAYN IDFP +ENRMKK + GF    IS
Sbjct:   544 SAVGDSNTKTAPKIERFPPALQSIPRNPIVLDLAYNCIDFPVIENRMKK-KGGFFSSRIS 602

Query:   598 RLW 600
              LW
Sbjct:   603 SLW 605

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB\|A6QQW3 SRP68 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PI42 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q00004 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UHB9 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1917447 Srp68 "signal recognition particle 68" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RW08 SRP68 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0P4 SRP68 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V1U4 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040831-3 srp68 "signal recognition particle 68" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSS2	SRP68_DROME	No assigned EC number	0.3093	0.8918	0.8874	yes	no
Q00004	SRP68_CANFA	No assigned EC number	0.3400	0.9168	0.8858	yes	no
Q9UHB9	SRP68_HUMAN	No assigned EC number	0.3394	0.9184	0.8803	yes	no
Q8BMA6	SRP68_MOUSE	No assigned EC number	0.3427	0.9068	0.872	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XV0330	hypothetical protein (602 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		601
KOG2460		593	consensus Signal recognition particle, subunit Srp	100.0
cd09247		346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	91.59
cd09242		348	BRO1_ScBro1_like Protein-interacting, N-terminal,	89.76
cd09241		355	BRO1_ScRim20-like Protein-interacting, N-terminal,	89.75
cd09239		361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	89.04
cd09034		345	BRO1_Alix_like Protein-interacting Bro1-like domai	89.01
PF03097		377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	88.21
PF13176		36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.46
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.95
PF13374		42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.57
cd09240		346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	81.96
PF00515		34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	81.26

>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.5e-114  Score=907.13  Aligned_cols=552  Identities=32%  Similarity=0.498  Sum_probs=474.9

Q ss_pred             ccchhHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHhhcCCccC-CCCcccccCCccccc--chhhHHHHHHHHHHH
Q 007506           26 KFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITESTVT--EVRFLHLVLYTAERA  102 (601)
Q Consensus        26 ~~sl~vl~~i~~~q~qhGLrh~DY~RYr~ycsrRL~rLRk~L~~t~g-~~Ky~~k~it~e~~~--d~r~l~llLl~AERa  102 (601)
                      --++.+|++++++|+|||||||||+|||+||++|++|+||.++|+.| .+||..+.||-...+  |.+||.+|++++||+
T Consensus        17 ~~t~~iL~~~kd~qqqHgLrhGd~qryR~yC~~~l~r~rKal~f~~gn~~k~~s~~v~~~~~~~~~~q~l~~~~~e~era   96 (593)
T KOG2460|consen   17 CRTLEILQTIKDAQQQHGLRHGDFQRYRGYCSRRLRRLRKALKFKNGNYGKFKSKDVTNKLKTLHDIQFLILPLAEAERA   96 (593)
T ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhHhhhhhhhhhhhhhhhHHHH
Confidence            34899999999999999999999999999999999999999999888 788988888766444  999999999999999


Q ss_pred             HHHHHH-hccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 007506          103 WSHAME-KRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAI--KADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN  179 (601)
Q Consensus       103 WAyAm~-lk~~~~~~~~r~R~h~~~RLkKA~~~A~~L~~l~~~--~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~  179 (601)
                      |||||+ .+| +.+..+|+|+|+++||||||+||.+|+++|++  +.|++|+|||+||++||+|.+.||++ +|+.|++.
T Consensus        97 ~Aeam~~~~Q-e~n~e~rkrfhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r-~Wk~a~ea  174 (593)
T KOG2460|consen   97 YAEAMQLAKQ-EGNTESRKRFHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERR-KWKDAAEA  174 (593)
T ss_pred             HHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHH-hHHhHHHH
Confidence            999999 777 67788999999999999999999999999986  47999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhhhhHHHHhhccCCCCC--CchHHHhhhhhcCCchhHHHHHHHHHHH-HH
Q 007506          180 FKSARAVYEELGKYGD-VENQVLCRERVEELEPSIRYCLHKIGESNV--KTSELLQIGEMEGPALDLFKSKLEAVMA-EA  255 (601)
Q Consensus       180 ~~~ar~iy~~L~~~~~-~~~~~l~~~~ve~idp~lRycay~l~~~~~--~~~dl~~~~~~~~~~~~~l~~kl~~~~~-~~  255 (601)
                      |+.|+.+|+.|+.+.+ ++++.+|+.++++|+|+|||||||++.+..  ...++|+++.+.+.+.-.+...++..+. .+
T Consensus       175 ~~~~klvye~L~~a~~~e~~~~v~~~~vneiqpnLRycA~Ni~~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t  254 (593)
T KOG2460|consen  175 FNNAKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPESNGFIDELMQSREQKDEELVKLLESVDFLISIQT  254 (593)
T ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHhcChhHHHHhhhccCccccchHHHHHHhhccCCchhhhhhhccchhhhcch
Confidence            9999999999999987 678999999999999999999999976654  4688888875543333335555666676 44


Q ss_pred             HHHhhccccEEEEcccccccCCHHHHHHHHHHHHHHHHHhHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007506          256 RSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNA  335 (601)
Q Consensus       256 ~~~~~~~~~~I~Wr~~~~~i~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~yd~~l~~~~dA~~~~k~~i~~~~~~  335 (601)
                      .+++.+.+++|+|||++|+|.+++|+++|..+++++..|.+++    +.+.+++.++++++.|.||++.+++.+.-....
T Consensus       255 ~tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~l~q~~----t~~~K~~llEkala~~edaI~~v~D~~~~d~~~  330 (593)
T KOG2460|consen  255 STESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPALAQIT----TYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQ  330 (593)
T ss_pred             hhhhhcceeEEEecCcccccccHHHHHHHHHHHhhcHHhccCC----CHhHHHHHHHHHHHHHHHHHHHHhhhcccchHh
Confidence            5555678999999999999999999999999999988776643    468999999999999999999999999643321


Q ss_pred             cCchhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccccccCCCCCChhhHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 007506          336 ENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKP  415 (601)
Q Consensus       336 ~~~~~el~~l~~yi~~~~l~~tIeRn~~Li~~l~~~~~~~~~~~~~k~~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~  415 (601)
                      .+..-..|.+++|+.|+++.+||.||..++..++..|.......++|+ +|+|+.||||+|+||+.||+||||+++    
T Consensus       331 ~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~-rpqdl~RLYd~iiknl~e~~elPG~~~----  405 (593)
T KOG2460|consen  331 RNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKL-RPQDLERLYDSIIKNLSEIMELPGLES----  405 (593)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCccccccc-CHHHHHHHHHHHHHHHHHHHhCCCccc----
Confidence            111124667899999999999999999999999999887655556666 999999999999999999999999764    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHhhccc
Q 007506          416 EEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNS  495 (601)
Q Consensus       416 ~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~~~~~~l~~L~~~i~~~~  495 (601)
                       |.+|+.+++++..||+|+||||||.+|+..+||+||+|||+||..+++++.+.+....+.+.+  ..+.+++.++++.+
T Consensus       406 -D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~--~~~~eli~el~k~k  482 (593)
T KOG2460|consen  406 -DKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLP--LLLLELISELQKRK  482 (593)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccc--hHHHHHHHHHHHHH
Confidence             889999999999999999999999999999999999999999999999999887766544333  55667888889889


Q ss_pred             hHHHHhhhhhHhhhhhhhccccccccccCCCcccccchhhhhhhcccccCCCCCCCCCccccCCCCcccccCCchhhhhh
Q 007506          496 CIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLA  575 (601)
Q Consensus       496 ~~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lie~ld~~~~~~~~~~~~~~~nl~~~pP~~~pvp~KPlfFDlA  575 (601)
                      +.++|.+++.+.-...    +    ..++++.+.+.||+|+||.|..+  .+.++.++|++++||.|+||||||+|||||
T Consensus       483 ~s~~a~~il~a~~a~~----t----nt~~sq~k~~~pLvE~lds~k~~--~~l~~k~~n~~~l~P~~~PIP~KPlFFDLA  552 (593)
T KOG2460|consen  483 ESLGAAVILLAEYAKR----T----NTGGSQGKDNLPLVETLDSYKLD--LSLDTKLPNLFPLPPDFLPIPCKPLFFDLA  552 (593)
T ss_pred             Hhhhhhhhhhhccchh----c----CCccccCCCcccHHHHHHHhccc--chhhhccCccccCCcccccCCCcchHHHHH
Confidence            9999999987644311    1    11134556789999999999942  235778999999999999999999999999


Q ss_pred             ccccCCCCchhhhhhc---------------cccccccccC
Q 007506          576 YNFIDFPSLENRMKKD---------------RKGFISRLWR  601 (601)
Q Consensus       576 ~Nyi~yP~l~~~~k~~---------------~~g~~~~~~~  601 (601)
                      +|||+||.++++.++.               ..||+++|||
T Consensus       553 ~~yl~~p~~edkleq~~k~~~~t~~~G~~k~~~Gf~~sf~g  593 (593)
T KOG2460|consen  553 FNYLTYPKLEDKLEQVKKSGTETTPTGEPKKKRGFLSSFGG  593 (593)
T ss_pred             HHhhcCCcccchhhhcCCCccccCCccccccchhhhhccCC
Confidence            9999999999988331               1388888886

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins	Back alignment and domain information

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins	Back alignment and domain information

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains	Back alignment and domain information

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome	Back alignment and domain information

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A	Back alignment and domain information

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		601
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-17

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 83.7 bits (206), Expect = 7e-17
 Identities = 100/672 (14%), Positives = 201/672 (29%), Gaps = 202/672 (30%)

Query: 4   NSETSAMEIDDKK--SINSDQIGPKFSINVLQ-----LLKSAQMQHGLRHGDYTRYRRYC 56
           + ET   +   K   S+  D     F    +Q     +L   ++ H +   D        
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------ 61

Query: 57  TARLRRLYKSL---------KFTHGRGKYTRKAITESTVTEVR--FLHLVLY--TAERAW 103
            +   RL+ +L         KF     +   K +     TE R   +   +Y    +R +
Sbjct: 62  -SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 104 S--HAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADP-----------RT 150
           +      K  +        R+    +LR+A         L  ++              +T
Sbjct: 121 NDNQVFAKYNVS-------RLQPYLKLRQA---------LLELRPAKNVLIDGVLGSGKT 164

Query: 151 SLEAEAYASY----MKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLC---- 202
            +  +   SY         +F     W   LKN  S   V E L        Q L     
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF-----WLN-LKNCNSPETVLEML--------QKLLYQID 210

Query: 203 -------------RERVEELEPSIRYCL--HKIGES-----NVKTSELLQIGEMEGPALD 242
                        + R+  ++  +R  L             NV+ ++          A +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-------AFN 263

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELE---KDLHVKAA 299
               K   ++   R      +T+F        IS     + +   +      K L  +  
Sbjct: 264 -LSCK---ILLTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIE 359
           D LP                E      +    +  AE+++D L   D         + + 
Sbjct: 317 D-LP---------------REV--LTTNPRRLSIIAESIRDGLATWD-------NWKHVN 351

Query: 360 RNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLL--LQNTAD-----LSDLVSSGRE 412
            ++L  +I++  L            +P E  +++D L     +A      LS +     +
Sbjct: 352 CDKLT-TIIESSLNVL---------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 413 RKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQR 472
                V    +    SL  +  +      + S+        ++Y   +   EN     + 
Sbjct: 402 SDVMVV--VNKLHKYSLVEKQPK----ESTISI-------PSIYLELKVKLENEYALHRS 448

Query: 473 MANSDQMMIEELKTLCKECRSNSCIE---------HAKGIMVEEKASE------NLS--- 514
           + +   +     KT   +      ++         H K I   E+ +       +     
Sbjct: 449 IVDHYNI----PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 515 NKI--STVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEA---F-PPAFQSIARN 568
            KI   + + + +G  ++   L++L  Y+  + D++ K    + A   F P   +++  +
Sbjct: 505 QKIRHDSTAWNASGSILN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 569 PI--VLDLAYNF 578
               +L +A   
Sbjct: 563 KYTDLLRIALMA 574

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		601
3rau_A		363	Tyrosine-protein phosphatase non-receptor type 23;	87.5

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}	Back alignment and structure

Probab=87.50  E-value=5.5  Score=41.50  Aligned_cols=77  Identities=16%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHh--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007506          388 ELVRLYDLLLQNTADLS--DLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAEN  465 (601)
Q Consensus       388 eivrLyd~ilq~l~ei~--eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~  465 (601)
                      ++..+|+.....+....  .+.|      .-+.++..-+..+..+|+|.=||+.|......+|+-||+|-+..|...+.+
T Consensus       211 q~~~~Y~~a~~~l~~~~~~~~~~------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~  284 (363)
T 3rau_A          211 QVVDYYKEACRALENPDTASLLG------RIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNE  284 (363)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHT------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHH
Confidence            35566766666654321  1112      124578888999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 007506          466 ALKDF  470 (601)
Q Consensus       466 a~~~~  470 (601)
                      +.+..
T Consensus       285 a~~~~  289 (363)
T 3rau_A          285 AIKLA  289 (363)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88653

PyMOL of 3rau

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00