Citrus Sinensis ID: 007507

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-
MAGLLPGESSHHGTSDSGPSSRNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDDLIERELEDIEIPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHAQENHL
cccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHccccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccc
cccccccccccccccccccccccccccccccccEEEcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHcccccccccccHEEEEcccHHHHHHHHHHHHHHHHccccccHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHcHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
magllpgesshhgtsdsgpssrnsqekpEEVARWYFSRreiedsspsrrdgidlkketYLRKSYCTFLQDLgmrlkvpqVTIATAIIFCHRFFirqshakndrRTIATVCMFLAgkveetprplkDVIIVSYEIihkkdstapqrIRQQKEVYEQQKELILLGERVVLATLGfdlnvhhpyKPLVEAIKKFKVAQNALAQVAWNFVNDGlrtslclqfkphhIAAGAIFLAAKFLKvklpsdgdkvwwqefdvtprQLEEVSNQMLELYeqnrvpqsqgsevegsaggasshrpqktpaaaeeqaskqtssrsatehshpenngassrtaqnnqsnddgsgemgsvitdhkadaetkdnqhheqlsqkenvrevpnkskSASERIAEDqgraggrhnnaeagewrddgashkssaiggrnldiregpvgqspkdAIKMIDEDKVKAIREKRrksrgeptrkkdfmdedDLIEREledieipvddekmKREQRQSwskshensdhgkghgevgdgnhlgtkghssrgleaenaeegemvdgspmlnsrkrkagspvdrqsegkkqhdymssynhdniedghkmsrpsysdreyRRHAQENHL
magllpgesshhgtsdsgpssrnsqekpeEVARWYfsrreiedsspsrrdgidlkketylRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIrqshakndrrTIATVCMFLagkveetprplkDVIIVSYEIihkkdstapqrirQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQAskqtssrsatehshpenngassrtaqnnqsnddGSGEMGSVITDHKADAETkdnqhheqlsqkenvrevpnksksASERIaedqgraggrhnnaeagewrddgashkssaiggrnldiregpvgqspkdaikmidedkvkairekrrksrgeptrkkdfmdeddliereledieipvddekmkREQRQSwskshensdhgkghgevgdgnhlGTKGHSSrgleaenaeegemvdgspmlnsrkrkagspvdrqsegkkqhdymssynhdniedghkmsrpsysdreyrrhaqenhl
MAGLLPGESSHHGTSDSGPSSRNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPqsqgsevegsaggassHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMdeddliereledieiPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHAQENHL
*********************************WYF*****************LKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKK*************VYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQ********************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**********************************YFSRREIE*********IDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQN*****************************************************************************************************************************************************************************************************************************************************************************************************************************************
******************************VARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQN*********************************************************************EMGSVITDHKAD******************************************HNNAEAGE**********SAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIRE**********RKKDFMDEDDLIERELEDIEIPVDDE***********************GEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLN********************DYMSSYNHDNIEDGHKMSR*****************
********************************RWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRV******************************************************************************************************************************************************************KMIDEDKVKAIREKRRKS***PTRKKDFMDEDDLIERELEDIEIPVDDEKMK*****************************************************************************************************************
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MAGLLPGESSHHGTSDSGPSSRNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDDLIERELEDIEIPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHAQENHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query601 2.2.26 [Sep-21-2011]
Q9FKE6579 Cyclin-T1-5 OS=Arabidopsi yes no 0.936 0.972 0.653 0.0
Q8GYM6541 Cyclin-T1-4 OS=Arabidopsi no no 0.885 0.983 0.623 0.0
Q2RAC5490 Cyclin-T1-3 OS=Oryza sati yes no 0.762 0.934 0.565 1e-162
Q2QQS5543 Cyclin-T1-4 OS=Oryza sati yes no 0.788 0.872 0.581 1e-160
Q56YF8460 Cyclin-T1-2 OS=Arabidopsi no no 0.494 0.645 0.621 1e-98
Q0E474446 Cyclin-T1-1 OS=Oryza sati no no 0.429 0.578 0.546 7e-85
Q6Z7H3630 Cyclin-T1-2 OS=Oryza sati no no 0.410 0.392 0.552 3e-82
Q9C8P7247 Putative cyclin-T1-1 OS=A no no 0.402 0.979 0.519 1e-70
Q8LBC0317 Cyclin-T1-3 OS=Arabidopsi no no 0.400 0.760 0.536 5e-69
Q9XT26 727 Cyclin-T1 OS=Equus caball yes no 0.392 0.324 0.370 4e-41
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function desciption
 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/614 (65%), Positives = 470/614 (76%), Gaps = 51/614 (8%)

Query: 1   MAGLLPGESSHHGTSDSGPSS--RNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKET 58
           MAG+L GE S+   S+SG SS  RNS EK EEV+RWYF R+EIE++SPSR DGIDLKKET
Sbjct: 1   MAGVLAGECSY---SESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKET 57

Query: 59  YLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVE 118
           YLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFF RQSHAKNDRRTIATVCMFLAGKVE
Sbjct: 58  YLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVE 117

Query: 119 ETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVH 178
           ETPRPLKDVI VSYEII+KKD  A Q+I+Q KEVYEQQKELIL GE++VL+TLGFDLNV+
Sbjct: 118 ETPRPLKDVIFVSYEIINKKDPGASQKIKQ-KEVYEQQKELILNGEKIVLSTLGFDLNVY 176

Query: 179 HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVK 238
           HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVK
Sbjct: 177 HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVK 236

Query: 239 LPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTP 298
           LPSDG+KVWWQEFDVTPRQLE+VSNQMLELYEQNRVP SQGSEVE S GG S+ RP    
Sbjct: 237 LPSDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQGSEVESSVGGGSAQRPGSRN 296

Query: 299 AAA--EEQASKQTSS-RSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADA- 354
           A +  E   S+QTSS RS  E S+ +N+G SS+    NQ+N++G GE  +V  D+K +  
Sbjct: 297 AVSTDEHVGSRQTSSVRSTHEQSNSDNHGGSSKGVL-NQNNENGGGEAANVSVDNKEEIE 355

Query: 355 -ETKDNQHHEQL--SQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASH 411
            ETK++  H +   + K+NVRE P+ S+   E   +D       ++  E GE +DDGA H
Sbjct: 356 RETKESSLHLESHPAHKDNVREAPHNSRPLVEGPGKD-------NSEREGGELQDDGAVH 408

Query: 412 KSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDDLI 471
           KS     RN+D+ +  + QSPKD +K++  DKVKA REK +K  GE TRKKD MDEDDLI
Sbjct: 409 KS-----RNVDVGDALISQSPKD-LKLL-RDKVKAKREKAKKLLGERTRKKDLMDEDDLI 461

Query: 472 ERELEDIEIPVDDEKMKREQRQSWSKSHENSD-HGKGHGEVGDGNHLGTKGHSSRGLEAE 530
           ERELED+++ V+DEK K  + QS  K+ ENSD  G  HGE+     L  KG      E +
Sbjct: 462 ERELEDVQLAVEDEKTKERKVQSRPKA-ENSDLMGTEHGEI-----LDVKG------EVK 509

Query: 531 NAEEGEMVDG--SPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPS-- 586
           N EEGEMV+   SPM++SRKRK GSP ++QSEGK++H      N +N E+ HK SR S  
Sbjct: 510 NTEEGEMVNNNVSPMMHSRKRKMGSPPEKQSEGKRRH------NSENGEESHKTSRGSSH 563

Query: 587 YSDREYRRHAQENH 600
           + DRE+RRH+QEN+
Sbjct: 564 HGDREHRRHSQENN 577

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query601
449487704574 PREDICTED: LOW QUALITY PROTEIN: cyclin-T 0.948 0.993 0.671 0.0
356521602567 PREDICTED: cyclin-T1-5-like [Glycine max 0.928 0.984 0.7 0.0
359494525623 PREDICTED: cyclin-T1-5-like isoform 1 [V 0.978 0.943 0.663 0.0
356576769568 PREDICTED: cyclin-T1-5-like [Glycine max 0.926 0.980 0.689 0.0
30694715579 cyclin-T1-5 [Arabidopsis thaliana] gi|14 0.936 0.972 0.653 0.0
297791271577 cyclin family protein [Arabidopsis lyrat 0.931 0.970 0.654 0.0
9759604583 unnamed protein product [Arabidopsis tha 0.936 0.965 0.648 0.0
238481486590 cyclin-T1-5 [Arabidopsis thaliana] gi|33 0.936 0.954 0.636 0.0
449465834657 PREDICTED: cyclin-T1-5-like [Cucumis sat 0.870 0.796 0.674 0.0
359495327586 PREDICTED: cyclin-T1-5-like [Vitis vinif 0.915 0.938 0.613 0.0
>gi|449487704|ref|XP_004157759.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/605 (67%), Positives = 464/605 (76%), Gaps = 35/605 (5%)

Query: 1   MAGLLPGESSHHGTSDSGPSSRNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKETYL 60
           M+GLLP ES+HH  SDSG SS+NSQE  +E  RWY SR+EIE++SPSRRDGIDLKKETYL
Sbjct: 1   MSGLLPFESTHHRISDSG-SSKNSQENQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYL 59

Query: 61  RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEET 120
           RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFF+RQSHAKNDRRTIATVCMFLAGKVEET
Sbjct: 60  RKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEET 119

Query: 121 PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHP 180
           PRPLKDVIIVSYEIIH K+  A QRI+Q KEVYEQQKELILLGERVVLATL FDLN+HHP
Sbjct: 120 PRPLKDVIIVSYEIIHTKNPGAAQRIKQ-KEVYEQQKELILLGERVVLATLAFDLNIHHP 178

Query: 181 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLP 240
           YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLP
Sbjct: 179 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLP 238

Query: 241 SDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSH-RPQKTPA 299
           SDG+KVWWQEFDVTPRQLEEVSNQMLELYEQNRVP +QGSEV+GS  G  SH    K  A
Sbjct: 239 SDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPVAQGSEVDGSTAGGPSHPNVAKATA 298

Query: 300 AAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDN 359
             EEQ SKQ SS SA EHS+ +N+G   R AQN   ++  + E GS IT +K D E  D+
Sbjct: 299 TTEEQTSKQMSSCSAPEHSYGDNHGIPQRAAQNLGKSNGTATEXGSTITGYKVDPELTDS 358

Query: 360 QHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGR 419
            H  ++  K+N +++ + ++S  E + E++ R                           R
Sbjct: 359 YHIAEMPYKDNSKDISDITRSVVEHVGEEKER-----------------------NTISR 395

Query: 420 NLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDDLIERELED-I 478
           N+++REGP+GQSPK+AIKMID DKVKA  EKRRKSRGE +RKKD MDEDDLIERELED I
Sbjct: 396 NVEVREGPIGQSPKEAIKMIDRDKVKAALEKRRKSRGEISRKKDVMDEDDLIERELEDGI 455

Query: 479 EIPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAEN-AEEGEM 537
           E+  +DEK +R      SK  +N D GK   E    +H GTK H+S G +AE+  EEGEM
Sbjct: 456 ELAAEDEKNRR------SKVIDNQDDGKVREESSSVHHAGTKNHTSWGAKAESVVEEGEM 509

Query: 538 V-DGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHA 596
           + D SP LNSRKRKAG   D  +EGKK +D MS+ +H  ++DG+  +R  YSDRE +RHA
Sbjct: 510 LDDASPALNSRKRKAGRSPDWHNEGKKWNDSMSNNHHHALDDGNCKNRSIYSDRELKRHA 569

Query: 597 QENHL 601
            ENHL
Sbjct: 570 HENHL 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356521602|ref|XP_003529443.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information
>gi|359494525|ref|XP_002268838.2| PREDICTED: cyclin-T1-5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576769|ref|XP_003556502.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information
>gi|30694715|ref|NP_199332.2| cyclin-T1-5 [Arabidopsis thaliana] gi|148887348|sp|Q9FKE6.2|CCT15_ARATH RecName: Full=Cyclin-T1-5; Short=CycT1;5; AltName: Full=Protein AtCycT-like1 gi|332007831|gb|AED95214.1| cyclin-T1-5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297791271|ref|XP_002863520.1| cyclin family protein [Arabidopsis lyrata subsp. lyrata] gi|297309355|gb|EFH39779.1| cyclin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9759604|dbj|BAB11392.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238481486|ref|NP_001154763.1| cyclin-T1-5 [Arabidopsis thaliana] gi|332007832|gb|AED95215.1| cyclin-T1-5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449465834|ref|XP_004150632.1| PREDICTED: cyclin-T1-5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359495327|ref|XP_002270692.2| PREDICTED: cyclin-T1-5-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query601
TAIR|locus:2153358590 AT5G45190 [Arabidopsis thalian 0.935 0.952 0.561 1.5e-154
TAIR|locus:2122975541 CYCT1;4 [Arabidopsis thaliana 0.620 0.689 0.701 3.9e-153
TAIR|locus:2122940460 CYCT1;2 [Arabidopsis thaliana 0.602 0.786 0.519 1.7e-89
TAIR|locus:2008698247 CYCT1;1 "cyclin T1;1" [Arabido 0.394 0.959 0.526 4.7e-64
TAIR|locus:2196919317 CYCT1;3 "cyclin T 1;3" [Arabid 0.405 0.769 0.534 1.6e-63
DICTYBASE|DDB_G0286617405 cycK "putative K-type cyclin" 0.559 0.829 0.363 4.3e-54
ZFIN|ZDB-GENE-030131-6397683 ccnt1 "cyclin T1" [Danio rerio 0.387 0.341 0.374 1.3e-40
UNIPROTKB|F6V6A9652 CCNT1 "Uncharacterized protein 0.402 0.371 0.375 6.1e-40
UNIPROTKB|E2QRW8 725 CCNT1 "Uncharacterized protein 0.402 0.333 0.375 2e-39
UNIPROTKB|F1Q423461 CCNL1 "Uncharacterized protein 0.374 0.488 0.349 2.1e-39
TAIR|locus:2153358 AT5G45190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
 Identities = 341/607 (56%), Positives = 405/607 (66%)

Query:     1 MAGLLPGESSHHGTSDSGPSS--RNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKET 58
             MAG+L GE S+   S+SG SS  RNS EK EEV+RWYF R+EIE++SPSR DGIDLKKET
Sbjct:     1 MAGVLAGECSY---SESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKET 57

Query:    59 YLRKSYCTFLQDLGMRLKVP-----------QVTIATAIIFCHRFFIRQSHAKNDRRTIA 107
             YLRKSYCTFLQDLGMRLK+             VTIATAIIFCHRFF RQSHAKNDRRTIA
Sbjct:    58 YLRKSYCTFLQDLGMRLKLAWFLDIIAYVCTDVTIATAIIFCHRFFFRQSHAKNDRRTIA 117

Query:   108 TVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVV 167
             TVCMFLAGKVEETPRPLKDVI VSYEII+KKD  A Q+I+Q KEVYEQQKELIL GE++V
Sbjct:   118 TVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQ-KEVYEQQKELILNGEKIV 176

Query:   168 LATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGA 227
             L+TLGFDLNV+HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGA
Sbjct:   177 LSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGA 236

Query:   228 IFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPXXXXXXXXXXXX 287
             IFLAAKFLKVKLPSDG+KVWWQEFDVTPRQLE+VSNQMLELYEQNRVP            
Sbjct:   237 IFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQGSEVESSVG 296

Query:   288 XXXXHRPQKTPAAAEEQ--ASKQTSS-RSATEHSHPENNGASSRTAQNNQSNDDGSGEMG 344
                  RP    A + ++   S+QTSS RS  E S+ +N+G SS+   N Q+N++G GE  
Sbjct:   297 GGSAQRPGSRNAVSTDEHVGSRQTSSVRSTHEQSNSDNHGGSSKGVLN-QNNENGGGEAA 355

Query:   345 SVITDHKADAE--TKDNQHHEQL--SQKENVREVPNKSKSASERIAEDQGRAGGRHNNAE 400
             +V  D+K + E  TK++  H +   + K+NVRE P+ S+   E   +D       ++  E
Sbjct:   356 NVSVDNKEEIERETKESSLHLESHPAHKDNVREAPHNSRPLVEGPGKD-------NSERE 408

Query:   401 AGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTR 460
              GE +DDGA HKS     RN+D+ +  + QSPKD +K++  DKVKA REK +K  GE TR
Sbjct:   409 GGELQDDGAVHKS-----RNVDVGDALISQSPKD-LKLL-RDKVKAKREKAKKLLGERTR 461

Query:   461 KKDFMXXXXXXXXXXXXXXXPVDDEKMKREQRQSWSKSHENSD-HGKGHGEVGDGNHLGT 519
             KKD M                V+DEK K  + QS  K+ ENSD  G  HGE+ D    G 
Sbjct:   462 KKDLMDEDDLIERELEDVQLAVEDEKTKERKVQSRPKA-ENSDLMGTEHGEILDVK--GE 518

Query:   520 KGHSSRGLEAENAEEGEMVDGSPMLNS--RKRKAGSPVDRQSEGKKQHDYMSSYNHDNIE 577
               ++  G    N     M      + S   K+  G        G++ H      +H    
Sbjct:   519 VKNTEEGEMVNNNVSPMMHSRKRKMGSPPEKQSEGKRRHNSENGEESHKTSRGSSHHGDR 578

Query:   578 DGHKMSR 584
             +  + S+
Sbjct:   579 EHRRHSQ 585
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0009615 "response to virus" evidence=IEP
GO:0009908 "flower development" evidence=IMP
GO:0010090 "trichome morphogenesis" evidence=IMP
GO:0048366 "leaf development" evidence=IGI
GO:0050792 "regulation of viral reproduction" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2122975 CYCT1;4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122940 CYCT1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008698 CYCT1;1 "cyclin T1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196919 CYCT1;3 "cyclin T 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286617 cycK "putative K-type cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6397 ccnt1 "cyclin T1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6V6A9 CCNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRW8 CCNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q423 CCNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2RAC5CCT13_ORYSJNo assigned EC number0.56580.76200.9346yesno
Q2QQS5CCT14_ORYSJNo assigned EC number0.58130.78860.8729yesno
Q9FKE6CCT15_ARATHNo assigned EC number0.65300.93670.9723yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__277__AT5G45190.1
annotation not avaliable (577 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 8e-42
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-20
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 4e-15
cd0004388 cd00043, CYCLIN, Cyclin box fold 7e-15
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 3e-10
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 6e-10
cd0004388 cd00043, CYCLIN, Cyclin box fold 3e-08
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  152 bits (386), Expect = 8e-42
 Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 35  YFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFI 94
             S+  IE         + L+KE  L   Y   + DL  RL +PQ  +ATAI+F  RF++
Sbjct: 19  DSSQNAIELDLLVLEPELTLEKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYL 78

Query: 95  RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYE 154
           + S  +    ++ T C++LA KVE+TPR   D+ I S+E                 E  +
Sbjct: 79  KNSVEEISLYSVVTTCVYLACKVEDTPR---DISIESFEARDL-----------WSEEPK 124

Query: 155 QQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNA-LAQVAWNFVNDGLRTS 213
             +E IL  E  +L  L FDL+VHHPYK L   +K  +      L Q+AW  +ND LRT 
Sbjct: 125 SSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTD 184

Query: 214 LCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKV 246
           LCL + PH IA  A+ +A + L + +    D V
Sbjct: 185 LCLLYPPHIIALAALLIACEVLGMPIIKLLDFV 217

Length = 297
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 601
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 100.0
KOG0835367 consensus Cyclin L [General function prediction on 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 100.0
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.96
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.87
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.87
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.84
KOG0653391 consensus Cyclin B and related kinase-activating p 99.84
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 99.81
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.79
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.67
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.63
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.59
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.56
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.31
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.15
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 98.9
KOG1598521 consensus Transcription initiation factor TFIIIB, 98.81
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.43
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.38
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.3
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.91
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.77
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.56
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.49
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 95.53
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 94.23
KOG1597308 consensus Transcription initiation factor TFIIB [T 94.12
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 90.65
KOG0835367 consensus Cyclin L [General function prediction on 88.29
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 88.01
TIGR00569305 ccl1 cyclin ccl1. University). 87.98
KOG1674218 consensus Cyclin [General function prediction only 87.95
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 83.1
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-49  Score=414.66  Aligned_cols=296  Identities=48%  Similarity=0.781  Sum_probs=252.7

Q ss_pred             cccccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHH
Q 007507           29 EEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIAT  108 (601)
Q Consensus        29 eq~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAa  108 (601)
                      .....|||+++|+++.+||+.+|++.+.|..+|..++.||+++|.+|++|+.|++||++||||||+.+++..+++++||+
T Consensus         7 ~~~~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~   86 (323)
T KOG0834|consen    7 GETSRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAA   86 (323)
T ss_pred             ccccccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHH
Confidence            45689999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHH
Q 007507          109 VCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAI  188 (601)
Q Consensus       109 ACLfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl  188 (601)
                      +|||||||+||+|++++|||.+++.++++.+      +. ..+.|+..++.|+.+|+.||++|+|||+|.+||.||.+|+
T Consensus        87 sclfLAgKvEetp~kl~dIi~~s~~~~~~~~------~~-~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~  159 (323)
T KOG0834|consen   87 SCLFLAGKVEETPRKLEDIIKVSYRYLNPKD------LE-LEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYL  159 (323)
T ss_pred             HHHHHHhhcccCcccHHHHHHHHHHHcCccc------cc-HHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHH
Confidence            9999999999999999999999999987654      11 5789999999999999999999999999999999999999


Q ss_pred             HHhccchH---HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHcCCCCCCCCccccccccC--CCHHHHHHHHH
Q 007507          189 KKFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFD--VTPRQLEEVSN  263 (601)
Q Consensus       189 ~~L~~~~~---~L~qlA~~~LnDsl~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~~~~~W~~~fd--vt~eeL~ei~~  263 (601)
                      +.++...+   .+++.||+|++|++++.+||+|+|.+||+|||+||+.+.++.+|...+..||..|+  +|.+.|.+++.
T Consensus       160 k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~  239 (323)
T KOG0834|consen  160 KKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICH  239 (323)
T ss_pred             HHhhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHH
Confidence            99988765   59999999999999999999999999999999999999999999877778999998  99999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccccccCCCCCCCCCCCCCchhhhhhhc--cCcccccCCCCCCCCCCCCcccccCCCCCCCCC
Q 007507          264 QMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQASKQ--TSSRSATEHSHPENNGASSRTAQNNQSNDDGSG  341 (601)
Q Consensus       264 eILeLY~~~~~~~~~~~~~~~s~~~~~~qr~~k~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (601)
                      +++++|+............+.....      .++..   ..+...  ++....+.+.+++..+++....+ ++++.++..
T Consensus       240 ~~l~~y~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~s~~~~~~  309 (323)
T KOG0834|consen  240 EFLDLYEQTPQRNHLLLNVEAVVEL------SKAKP---GNVRPRIPSSRDPNSSERLSDTRVNGSKSSS-SSSNHRSPH  309 (323)
T ss_pred             HHHHHHhhccccccccccccccccc------cccCC---CCCCCCCCccccCccccccccccccCccccc-cccccccCc
Confidence            9999999987775555443321110      01111   111111  11122345556777777777777 666665444

>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
2w2h_A264 Structural Basis Of Transcription Activation By The 5e-39
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 6e-39
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 3e-38
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 3e-38
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 1e-37
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 8e-37
2i53_A258 Crystal Structure Of Cyclin K Length = 258 1e-36
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 5e-18
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 5e-11
1kxu_A333 Cyclin H, A Positive Regulatory Subunit Of Cdk Acti 1e-08
1jkw_A323 Structure Of Cyclin Mcs2 Length = 323 1e-08
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/244 (36%), Positives = 147/244 (60%), Gaps = 10/244 (4%)
Query: 33  RWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRF 92
           RWYF+R ++E+S PSRR G+D  KE   R+     LQD+G RL V Q+TI TAI++ HRF
Sbjct: 8   RWYFTREQLENS-PSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRF 66
Query: 93  FIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEV 152
           ++ QS  +  R ++A   +FLA KVEE P+ L+ VI V++  +H ++S    R     E 
Sbjct: 67  YMIQSFTRFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTR----SEA 122
Query: 153 YEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR- 211
           Y QQ + +++ E ++L TLGF+L + HP+  +V+  +  + +++ LAQ ++    + L  
Sbjct: 123 YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHL 181
Query: 212 TSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGD-KVWWQEFD--VTPRQLEEVSNQMLEL 268
           T+  LQ+ P  +A   I LA K+   ++P   D K WW+  D  VT   L+E++++ L++
Sbjct: 182 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQI 241
Query: 269 YEQN 272
            E+ 
Sbjct: 242 LEKT 245
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase Length = 333 Back     alignment and structure
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2 Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 3e-93
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 1e-84
2ivx_A257 Cyclin-T2; transcription regulation, cell division 1e-82
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 6e-81
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 6e-73
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 1e-69
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-12
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 3e-11
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 5e-10
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-09
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 4e-09
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 5e-09
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 8e-06
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  286 bits (732), Expect = 3e-93
 Identities = 89/268 (33%), Positives = 144/268 (53%), Gaps = 19/268 (7%)

Query: 20  SSRNSQEKPEEVARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQ 79
            S  S         WY+ ++++   +PS+ +G+D   E   R+    F+ D+G RL +  
Sbjct: 1   GSVTSANLDHTKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHY 59

Query: 80  VTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKD 139
            T+AT II+ HRF++  S  +  R      C+FLAGKVEETP+  KD+I  +  +++   
Sbjct: 60  DTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLND-- 117

Query: 140 STAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNA-- 197
                   Q  +  +  KE +++ ER++L T+ FDL V HPY+ L++  K+ K  +N   
Sbjct: 118 -------VQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQ 170

Query: 198 -LAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKV----WWQEF- 251
            L Q+AW FVND L T+L LQ++P  IA   ++LA +  K ++     K     WW++F 
Sbjct: 171 KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFV 230

Query: 252 -DVTPRQLEEVSNQMLELYEQNRVPQSQ 278
            DV    LE++ +Q+L+LY Q +     
Sbjct: 231 QDVPVDVLEDICHQILDLYSQGKQQMPH 258
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query601
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.98
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.97
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.96
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.95
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.94
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.9
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.77
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.76
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.5
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.15
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 95.11
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.33
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 94.25
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 93.87
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 92.85
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 92.57
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 91.98
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 91.75
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 91.3
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 91.17
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 90.64
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 90.54
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 90.24
2ivx_A257 Cyclin-T2; transcription regulation, cell division 89.74
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 89.61
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 88.3
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 86.71
3m03_A95 ORC6, origin recognition complex subunit 6; helix 82.49
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=6.7e-45  Score=367.55  Aligned_cols=236  Identities=34%  Similarity=0.655  Sum_probs=215.8

Q ss_pred             cccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHH
Q 007507           31 VARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVC  110 (601)
Q Consensus        31 ~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaAC  110 (601)
                      .++||||++|| +.+||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||+.+++.++++++||+||
T Consensus         2 ~~~w~~t~e~l-~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac   80 (257)
T 2ivx_A            2 SSRWFFTREQL-ENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA   80 (257)
T ss_dssp             CGGGSCCHHHH-HSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred             CCCeeecHHHH-HhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence            36899999999 58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccccCcHHHHHHHHHH
Q 007507          111 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK  190 (601)
Q Consensus       111 LfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v~~P~~fL~~fl~~  190 (601)
                      ||||||+||+|+++++|+.+++.+.++..|.    +...+..|...+++|+.||+.||++|+|+|.+++|+.||.+|++.
T Consensus        81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~  156 (257)
T 2ivx_A           81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL----LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQL  156 (257)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC----CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred             HHHHhccccCCcCHHHHHHHHHHHhccCCCC----CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHH
Confidence            9999999999999999999998877654332    111467888889999999999999999999999999999999999


Q ss_pred             hccchHHHHHHHHHHHHHHh-ccccccccchHHHHHHHHHHHHHHcCCCCCCC-Ccccccccc--CCCHHHHHHHHHHHH
Q 007507          191 FKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD-GDKVWWQEF--DVTPRQLEEVSNQML  266 (601)
Q Consensus       191 L~~~~~~L~qlA~~~LnDsl-~t~l~L~y~Ps~IAaAAIyLA~~~l~i~lP~~-~~~~W~~~f--dvt~eeL~ei~~eIL  266 (601)
                      ++.. ..+.+.||+|+++++ .+++|+.|+|+.||+||||+|+.+++.++|.. +...||..|  +++.++|.+|+.+|+
T Consensus       157 l~~~-~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~  235 (257)
T 2ivx_A          157 VRAS-KDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFL  235 (257)
T ss_dssp             TTCC-HHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHH
T ss_pred             hCCC-cHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHH
Confidence            9876 468999999999998 58899999999999999999999999988853 246799988  799999999999999


Q ss_pred             HHHhcC
Q 007507          267 ELYEQN  272 (601)
Q Consensus       267 eLY~~~  272 (601)
                      ++|...
T Consensus       236 ~~~~~~  241 (257)
T 2ivx_A          236 QILEKT  241 (257)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            999864
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 601
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 4e-49
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 4e-47
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 2e-36
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 1e-34
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-33
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 2e-25
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 6e-10
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-08
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-08
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-06
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-06
d1aisb198 a.74.1.2 (B:1108-1205) Transcription factor IIB (T 7e-04
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (418), Expect = 4e-49
 Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 5/145 (3%)

Query: 33  RWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRF 92
           RW+F+R ++E++ PSRR G++  KE   R+     +Q++G RL V Q+TI TAI++ HRF
Sbjct: 4   RWFFTREQLENT-PSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRF 62

Query: 93  FIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEV 152
           ++  S  K ++  I++  +FLA KVEE  R L+ VI V++  +H  +     +     + 
Sbjct: 63  YMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKC----DA 118

Query: 153 YEQQKELILLGERVVLATLGFDLNV 177
           Y QQ   +++ E ++L TLGF++ +
Sbjct: 119 YLQQTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query601
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.97
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.91
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.77
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.75
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.69
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.68
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.67
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.67
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.66
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.14
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.8
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.76
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.63
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.46
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.28
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.25
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.23
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.9
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.83
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.56
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.26
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 93.26
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.08
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 92.41
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 91.06
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 90.64
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 90.18
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 89.12
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 88.95
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 87.67
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-31  Score=243.27  Aligned_cols=142  Identities=37%  Similarity=0.692  Sum_probs=130.5

Q ss_pred             cccccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHH
Q 007507           31 VARWYFSRREIEDSSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVC  110 (601)
Q Consensus        31 ~~~WyFT~eELee~sPSr~dgIs~e~E~~lR~~~v~~I~ev~~~LkLp~~TiaTAi~yf~RFy~~~S~~~~dl~lVAaAC  110 (601)
                      .++||||+++|+ .+||+.+||+.++|..+|..+|+||+++|..|+||+.|+++|++||||||+++++..+++++||+||
T Consensus         2 ~~~w~~t~~~l~-~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~ac   80 (143)
T d2ivxa1           2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA   80 (143)
T ss_dssp             CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred             CCCCCCCHHHHH-hCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence            478999999995 6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCChHHHHHHHHHHHhcCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 007507          111 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNV  177 (601)
Q Consensus       111 LfLA~KvEE~prkL~dIi~Vs~~l~~k~dP~~~~rI~~~~e~Y~~~ke~Il~~E~~IL~tL~FDL~v  177 (601)
                      ||||||+||+++++++++.+++.+.++..+.    +....+.|..++++|+.||+.||++|+|||+|
T Consensus        81 l~LA~K~eE~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL----LDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC----CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHhcccchh----hhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            9999999999999999999998887654332    12246788889999999999999999999986
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure