BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007508
(601 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 275 bits (703), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 229/400 (57%), Gaps = 20/400 (5%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVA 68
L+ L DQ+P FP +A + IEEELG+P E ++ +S EP+AAAS GQVY+G G VA
Sbjct: 140 LTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVA 199
Query: 69 VKVQRPNLRHVVVRDIYILR-IGLGLLQKIAKRKSDLRLYADELGKGLVGELDYTLEAAN 127
VKVQRP+L + DIYI+R + L + + + +SDL DEL + E++Y EA N
Sbjct: 200 VKVQRPDLVRRITLDIYIMRSLSLWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAIN 259
Query: 128 ASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDR 187
+F + + P I+VP ++ + +RVLTMEW+ G T++ ++
Sbjct: 260 GEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQA------------- 306
Query: 188 QKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMER 247
Q +DA LV GV+ +L QLLE G HADPHPGNL + G++ +LDFG++ ++
Sbjct: 307 QGIDAT----HLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQP 362
Query: 248 KHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDV 307
++ ++ ++VH+VN D+ SL ++D ++P T+ + L G + ++
Sbjct: 363 YQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNA-LGASVAEL 421
Query: 308 KFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 367
F + ++ ++ ++ FR+P YY L++RS+ +LEG+AI DP+FK AYP++ ++LL
Sbjct: 422 NFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLL 481
Query: 368 TENSVATRKILHSVVFNKKKEFQWQRLSLFLRVGATRKGL 407
T+ S R L ++F K+ F+W RL LR G
Sbjct: 482 TDQSEELRTSLKELLF-KEGSFRWNRLENLLRNAKNSPGF 520
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 236/451 (52%), Gaps = 46/451 (10%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVA 68
L +L DQ+PPF +A +++EE+LG V+ + IS PVAAAS GQVYR G VA
Sbjct: 106 LIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVA 165
Query: 69 VKVQRPNLRHVVVRDIYILRIGLGLLQKIAK-----RKSDLRLYADELGKGLVGELDYTL 123
VKVQRPNLR + D+Y++R+G QK + DL L DE G L E+DY
Sbjct: 166 VKVQRPNLRPRLSLDLYLMRLG---AQKFGRFLPLNLGHDLTLIVDEFGIKLFEEIDYLN 222
Query: 124 EAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSST 183
E NA +F E+ + VP ++ S ++VLT+EW+ G TD + + +D S
Sbjct: 223 EGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIR-AAGLDPS-- 279
Query: 184 HLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLC 243
D++ GV + L QLLE G HADPHPGNL T G++ ++DFG++
Sbjct: 280 --------------DIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMD 325
Query: 244 RMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDG 303
++E + + +SIV ++N D+ +L + + P T+ + LE+ G
Sbjct: 326 QLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSA-IGQS 384
Query: 304 IPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVI 363
+ D F + + Y FR+P + L++RSL + EGLA++ DP+FK E AYP+V
Sbjct: 385 VQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVA 444
Query: 364 QKLLTENSVATRKILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLP 423
++LLT S R+ L V+F K +FQWQRL L + +++T D LP
Sbjct: 445 RRLLTGESPQLRRQLIDVLF-KNGKFQWQRLENMLSIA------------RSDTKFDLLP 491
Query: 424 NRVGVFDAANLVLRLLRTNNGVVLRRLLMTA 454
A L L+ L + G+ LRR ++ A
Sbjct: 492 -------TAQLGLQFLFSEEGLYLRRQILLA 515
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 213/390 (54%), Gaps = 22/390 (5%)
Query: 12 LHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDGSIVAVK 70
L D +PPFP +A IIEEELG P+E+ FS IS + +AAAS GQVYR + G VA+K
Sbjct: 206 LQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIK 265
Query: 71 VQRPNLRHVVVRDIYILRIGLGLLQKIAKRK--SDLRLYADELGKGLVGELDYTLEAANA 128
VQRP + ++ RD+++ R L + +K + L DE G+ L+ ELDYTLEA N
Sbjct: 266 VQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNI 325
Query: 129 SEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQ 188
+F E+ P + +P V++ L RVL MEW+ G TD ++
Sbjct: 326 EDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIK--------------- 370
Query: 189 KLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERK 248
DA L + GV A L QLLE G+ H DPHPGN+ G+I ++DFG + + ++
Sbjct: 371 --DAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQ 428
Query: 249 HQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVK 308
++ ++ ++VH VN D+ + + T + + T+ + LE A+ + G+ D
Sbjct: 429 NKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALE-AIWQNSAGKGLADFN 487
Query: 309 FSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLT 368
F V G+ + + R+P ++LV+RSL + EG+ P FK E AYP+V ++LLT
Sbjct: 488 FRSVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLT 547
Query: 369 ENSVATRKILHSVVFNKKKEFQWQRLSLFL 398
+ + A R+ L V+F K FQW+RL L
Sbjct: 548 DPNPALRERLIQVLF-KDGVFQWKRLENLL 576
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/447 (33%), Positives = 236/447 (52%), Gaps = 42/447 (9%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDGSIV 67
L+EL D +P FP + A IE EL +E+ FS +S EP+AAAS GQVY+ G +V
Sbjct: 183 LAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVV 242
Query: 68 AVKVQRPNLRHVVVRDIYILRIGLGLL--QKIAKRKSDLRLYADELGKGLVGELDYTLEA 125
AVKVQRP + + D Y++R G+G L + + +D+ DE + EL+Y EA
Sbjct: 243 AVKVQRPGIEEAIGLDFYLIR-GVGKLINKYVDFITTDVLTLIDEFACRVYQELNYVQEA 301
Query: 126 ANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHL 185
NA F++ ++ + VP +F + ++VLTMEW+ G + +++ +
Sbjct: 302 QNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQG--------- 352
Query: 186 DRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRM 245
++LDLVN G++ +L QLLE G HADPHPGNL T G++ FLDFG++
Sbjct: 353 --------LKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSET 404
Query: 246 ERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIP 305
+ +FA++ +VH+VN D++++ + + P + + L D + +
Sbjct: 405 PEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDA-LNYTVS 463
Query: 306 DVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQK 365
++ F ++ + ++ +Y F +PPYY L+LRSL LEGLA+ DP+FK A+YP+ ++
Sbjct: 464 ELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKR 523
Query: 366 LLTENSVATRKILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNR 425
LLT+ + R L ++F K +F+W RL L+ G+ +
Sbjct: 524 LLTDPNPYLRDALIELLF-KDGKFRWNRLENLLQQGSKDRDF------------------ 564
Query: 426 VGVFDAANLVLRLLRTNNGVVLRRLLM 452
DA VL+LL NG LR L++
Sbjct: 565 -SAKDALQPVLKLLLDPNGEELRLLVI 590
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 206/378 (54%), Gaps = 27/378 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDGSIV 67
LS L DQI PF +A +IE+ELG P++ FS IS EPVAAAS GQVY+ G +V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215
Query: 68 AVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYADELGKGLVGELDYTLEAAN 127
AVKVQRP +R + D ILR GL++K + SDL DE L E+DY EA N
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIKKAGRFNSDLEAVVDEWATSLFKEMDYLNEAQN 275
Query: 128 ASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDR 187
+F++ + + VPK++ S +VL MEW+ G
Sbjct: 276 GIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEG------------------------ 311
Query: 188 QKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMER 247
QKL+ + L LV GV + QLLE G HADPHPGN T GQ+ +LDFG++
Sbjct: 312 QKLN-EVNDLYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRP 370
Query: 248 KHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDV 307
+ + + + +H+VN D+++L + ++ P VT L D + G+ ++
Sbjct: 371 ELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDA-ISRGVRNI 429
Query: 308 KFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 367
F +LG + ++ FR+PPY++LV+RSLA LEG+AI P++K + YP++ +K+L
Sbjct: 430 SFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKIL 489
Query: 368 TENSVATRKILHSVVFNK 385
T++S + L ++++ +
Sbjct: 490 TDSSPQLKSSLQNLLYEE 507
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 185/367 (50%), Gaps = 36/367 (9%)
Query: 8 ALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIV 67
A ++L D++PPF A+ +IE+EL ++ F P+A+AS GQV+R G V
Sbjct: 93 AFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAV 152
Query: 68 AVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKR----------KSDLRLYADELGKGLVG 117
VKVQRP L ++ D +L L ++AKR K ++ E L
Sbjct: 153 VVKVQRPGLDSLLNLDFELLHQTL----RLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFL 208
Query: 118 ELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSS 177
E+DY E NA F+++ + +P + VP+++ + + VLT+E++ G
Sbjct: 209 EIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYL------------PGIK 256
Query: 178 VDGSSTHLDRQKLDAKWRLLDLV-NKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF 236
VD DRQ L+ LDLV G+ A L QLL G +DPHPGN+ S G + F
Sbjct: 257 VD------DRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIF 310
Query: 237 LDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALG 296
DFG + ++ + M+ + ++ D ++ +L M +V P + + + L
Sbjct: 311 YDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLD 370
Query: 297 EVEFKDGIPDVK-FSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTF 355
F+D D+K F +V +++++ + FR+PP T +L+S+++L+G+A A DP +
Sbjct: 371 --NFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLI 428
Query: 356 EAAYPFV 362
A+ PF+
Sbjct: 429 AASQPFI 435
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 211/461 (45%), Gaps = 55/461 (11%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVA 68
LS+L D++P F A IIEEELG P+ + P+AAAS GQV++ G V
Sbjct: 121 LSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVV 180
Query: 69 VKVQRPNLRHVVVRDIYILRIGLGLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAA 126
VKVQRP L+ + D+ IL+ Q K R D +E K L E DY E
Sbjct: 181 VKVQRPGLKKLFTIDLAILKKIAQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGR 240
Query: 127 NASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLD 186
+A F+ + ++ VP+V+ + ++LT+E++ G I +S +++ + L+
Sbjct: 241 SADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPG------IKISHYDALEAAG--LE 292
Query: 187 RQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYT-SSGQIGFLDFGLLCRM 245
R+ +L G A L QLL G HADPHPGNL + +G++ F DFG++ +
Sbjct: 293 RK---------ELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEI 343
Query: 246 ERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEF-KDGI 304
+ ++ ++ + + + +V+SL + L+ T D+ V+F D
Sbjct: 344 TPDTKNKLMDTLFGVAEKNAERIVNSLVAL-------GALKETEDMGPIRRSVQFLLDNF 396
Query: 305 PDVKF-----SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAY 359
D F +++ ++ IA FR P +T V+R+ ++LEG+ DP F A
Sbjct: 397 MDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQ 456
Query: 360 PFVIQKLLTENSVATRKILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTL 419
PF +Q + N FN + ++VG + GL + I E +L
Sbjct: 457 PFALQIMNNSNG-----------FNPAGNIMDELGRQAVQVGNSALGLPRRI----EDSL 501
Query: 420 DYLPNRVGVFDAANLVLRLLRTNNGVVLRRLLMTADGASLI 460
D L D ++ +R+ T +LRR+ G + +
Sbjct: 502 DRL-------DRGDIRVRVRSTETDRLLRRMGTMQMGTNYV 535
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 175/361 (48%), Gaps = 20/361 (5%)
Query: 6 SIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGS 65
++ L++L D++PPF ++ + IE+ LG +E ++ EP+A+AS QV++ G
Sbjct: 84 AVELAKLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGE 143
Query: 66 IVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTL 123
VAVKV RPNL V+ +D+ ++R G G ++++ L R E K L ELD
Sbjct: 144 QVAVKVLRPNLLPVIEQDLSLMRFGAGWVERLFADGKRLKPREVVAEFDKYLHDELDLMR 203
Query: 124 EAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSST 183
EAANAS+ + + VPKVF VLT+EWM G +D+ L DG
Sbjct: 204 EAANASQLGRNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKA----DGIDL 259
Query: 184 HLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLC 243
H L + GVE Q+ G HAD HPGN+ + + LDFG++
Sbjct: 260 H-------------KLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVG 306
Query: 244 RMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDG 303
+ + + + + N D++ + + E V T + + A+ E F
Sbjct: 307 TLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEAAVR-AVCEPVFNKP 365
Query: 304 IPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVI 363
I + F VL +++ ++ +++ + P L+ ++L ++EGL DP ++ A PF++
Sbjct: 366 ISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLV 425
Query: 364 Q 364
+
Sbjct: 426 K 426
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 175/362 (48%), Gaps = 22/362 (6%)
Query: 6 SIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGS 65
++ L++L D++PPF ++ + IE+ LG +E ++ EP+A+AS QV++ G
Sbjct: 84 AVELAKLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGE 143
Query: 66 IVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI---AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPNL ++ +D+ ++R G ++++ +R L + A E K L ELD
Sbjct: 144 RVAVKVLRPNLLPLIEQDLSLMRFGAAWVERLFSDGRRLKPLEVVA-EFDKYLHDELDLM 202
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAANA + + + VPKVF VLT+EWM G D+ L DG
Sbjct: 203 REAANAGQLGRNFHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKA----DGID 258
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLL 242
H L + GVE Q+ G HAD HPGN+ + + LDFG++
Sbjct: 259 LH-------------KLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIV 305
Query: 243 CRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKD 302
+ + + + + N D++ + + E V T + + A+ E F
Sbjct: 306 GTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEAAVR-AVCEPVFNK 364
Query: 303 GIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 362
I + F VL +++ ++ +++ + P L+ ++L ++EGL DP ++ A PF+
Sbjct: 365 PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFL 424
Query: 363 IQ 364
++
Sbjct: 425 VK 426
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 179/368 (48%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L D++PPFP +A+K IEE+LG+ +E F+ EP+A+AS QV+ G
Sbjct: 89 IANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI---AKRKSDLRLYADELGKGLVGELDY 121
V VKV RPNL V+ DI L I L +++ A+R + + +D K +V ELD
Sbjct: 149 EEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSD-YEKTIVDELDL 207
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L
Sbjct: 208 LREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRD------- 260
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFL 237
Q+ D K L +GVE Q+ HAD HPGN+ R S Q +
Sbjct: 261 ------QRTDFK----ALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAV 310
Query: 238 DFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL-- 295
D G++ + + Q + +++ D++ + + V T D E A+
Sbjct: 311 DCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETK----VNDFEAAIRT 366
Query: 296 -GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 427 WATAQPFL 434
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 179/368 (48%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L D++PPFP +A+K IEE+LG+ +E F+ EP+A+AS QV+ G
Sbjct: 89 IANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI---AKRKSDLRLYADELGKGLVGELDY 121
V VKV RPNL V+ DI L I L +++ A+R + + +D K +V ELD
Sbjct: 149 EEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSD-YEKTIVDELDL 207
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L
Sbjct: 208 LREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRD------- 260
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFL 237
Q+ D K L +GVE Q+ HAD HPGN+ R S Q +
Sbjct: 261 ------QRTDFK----ALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAV 310
Query: 238 DFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL-- 295
D G++ + + Q + +++ D++ + + V T D E A+
Sbjct: 311 DCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETK----VNDFEAAIRT 366
Query: 296 -GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 427 WATAQPFL 434
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 179/368 (48%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L D++PPFP +A+K IEE+LG+ +E F+ EP+A+AS QV+ G
Sbjct: 89 IANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI---AKRKSDLRLYADELGKGLVGELDY 121
V VKV RPNL V+ DI L I L +++ A+R + + +D K +V ELD
Sbjct: 149 EEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSD-YEKTIVDELDL 207
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L
Sbjct: 208 LREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRD------- 260
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFL 237
Q+ D K L +GVE Q+ HAD HPGN+ R S Q +
Sbjct: 261 ------QRTDFK----ALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAV 310
Query: 238 DFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL-- 295
D G++ + + Q + +++ D++ + + V T D E A+
Sbjct: 311 DCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETK----VNDFEAAIRT 366
Query: 296 -GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 427 WATAQPFL 434
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 179/368 (48%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L D++PPFP +A+K IEE+LG+ +E F+ EP+A+AS QV+ G
Sbjct: 89 IANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI---AKRKSDLRLYADELGKGLVGELDY 121
V VKV RPNL V+ DI L I L +++ A+R + + +D K +V ELD
Sbjct: 149 EEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSD-YEKTIVDELDL 207
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L
Sbjct: 208 LREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRD------- 260
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFL 237
Q+ D K L +GVE Q+ HAD HPGN+ R S Q +
Sbjct: 261 ------QRTDFK----ALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAV 310
Query: 238 DFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL-- 295
D G++ + + Q + +++ D++ + + V T D E A+
Sbjct: 311 DCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETK----VNDFEAAIRT 366
Query: 296 -GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 427 WATAQPFL 434
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 176/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L DQ+PPFP A+ +IE +LG+PV F+ +P+A+AS QV+ G
Sbjct: 88 IADELARLQDQVPPFPEDQAIALIERQLGAPVSQLFARFDSQPLASASVAQVHAAQLKSG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS-DLRLY-----ADELGKGLVGE 118
V VKV RP L+ V+ +D+ L LL +IA+R S D R + K + E
Sbjct: 148 EEVVVKVVRPGLKPVIRQDL----AWLFLLARIAERASADARRLRPVEVVSDYEKTIFDE 203
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + P ++VP+V+ L R +VL ME + G TDL +L+
Sbjct: 204 LDLLREAANASQLRRNFEGSPLLYVPQVYWDLCRHQVLVMERIYGVPVTDLATLAD---- 259
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ R S Q
Sbjct: 260 ---------QRTDMKL----LAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRTPWSPQY 306
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + +++ D++ + + V T +
Sbjct: 307 IAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPADTKVNEFEAAIR-T 365
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F ++L +++ A +++ + P L+ ++L ++EGL P
Sbjct: 366 VCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 426 WSTAQPFL 433
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 184/383 (48%), Gaps = 26/383 (6%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L++L D++PPFP ++ + + LG P+E F+ +PVA+AS QV+ G DG
Sbjct: 82 IANELAKLQDRVPPFPSDVSRAAVVQSLGRPIEEVFASFDADPVASASIAQVHFGVLHDG 141
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAK--RKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ +++ D+ +LR+ L++++ R+ R E L ELD
Sbjct: 142 REVAVKVLRPNVLNIIEADLALLRVAAAWLERLSPDGRRLRPREVVAEFDNYLHDELDLG 201
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAANA++ + + I +P++ LS VL ME M G P I + +D
Sbjct: 202 REAANAAQLRRNMGGLDLIMLPEMIWDLSSAEVLVMERMHG-VPISQIETLRAAGID--- 257
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L GV Q+ G HAD HPGN+ +++ G+ LD
Sbjct: 258 -------------IPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVSTAPATFGRYIALD 304
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ ++ + + + + + D++ + E V P + + A+ E
Sbjct: 305 FGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWV-PASTRVDELEGAVRAVCEP 363
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++ + +++ + P L+ ++L ++EGL DP ++ A
Sbjct: 364 HFDRPLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVEGLGRQLDPELDLWQTA 423
Query: 359 YPFVIQKLLTENSVATRKILHSV 381
PF +++ + E V R +L S+
Sbjct: 424 KPF-LERWMNEQ-VGWRALLGSI 444
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 181/390 (46%), Gaps = 30/390 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLD----- 63
L+ L D++PPF IA +++E LG VE F +PVA+AS QV++
Sbjct: 85 LALLQDRVPPFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGR 144
Query: 64 GSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDY 121
G VAVKV RP + V+ +D+ ++R G ++K+ L R E K L ELD
Sbjct: 145 GREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDM 204
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAANAS+ + + + VP+VF S + VLT+EWM G P I + VD
Sbjct: 205 MHEAANASQLRRNFKGSDMLIVPEVFYDYSSREVLTLEWMHG-IPVGQIERLREAGVD-- 261
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGL 241
L L GVE Q+ G HAD HPGN+ + G+ LDFG+
Sbjct: 262 --------------LQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGI 307
Query: 242 LCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFK 301
+ + + + + + N D+ + + E V T + + + E F+
Sbjct: 308 VGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEELEAAVR-TVCEPIFE 366
Query: 302 DGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPF 361
+ ++ F VL +++ + +++ + P L+ ++L ++EGL DP ++ A PF
Sbjct: 367 KPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426
Query: 362 VIQKLLTENSVATRKILHSVVFNKKKEFQW 391
+ K + E + R +L ++ K + QW
Sbjct: 427 -LTKWMNEQ-IGWRGLLRTL---KHEAPQW 451
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 30/367 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF +++K+IEE+LG + FS EP+A+AS QV+ G
Sbjct: 88 IADELMRLQDRVPPFDSQLSVKLIEEQLGKKISEVFSRFDVEPLASASVAQVHAAQLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLY-----ADELGKGLVGEL 119
V VKV RP L+ ++ +D+ L I L + K +D RL + K + EL
Sbjct: 148 EEVVVKVIRPGLKPIIAQDLAWLFI---LARAAEKVSADARLLHPVDVVSDYEKTIYDEL 204
Query: 120 DYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVD 179
D EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L+
Sbjct: 205 DLLREAANASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLAD----- 259
Query: 180 GSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQIG 235
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 260 --------QRTDMKM----LAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYI 307
Query: 236 FLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL 295
+D G++ + + Q + ++ D++ + + V P L +
Sbjct: 308 AIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRTV 366
Query: 296 GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTF 355
E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P +
Sbjct: 367 CEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLW 426
Query: 356 EAAYPFV 362
A PF+
Sbjct: 427 NTAQPFL 433
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 177/382 (46%), Gaps = 48/382 (12%)
Query: 2 LLIISIA--LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY-- 57
LL + IA L++L DQ+PPF ++A++++E LG+PV+ F PVA+AS QV+
Sbjct: 76 LLPVDIADELAKLQDQVPPFESAVAIRLVENALGAPVDVLFDDFERVPVASASIAQVHFA 135
Query: 58 --RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD------ 109
+ G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 136 TVKAGQHAGKAVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKP 186
Query: 110 -----ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGE 164
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG
Sbjct: 187 REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVG- 245
Query: 165 SPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPG 224
P + + VD + L +GVE Q+ G HAD HPG
Sbjct: 246 VPISQVETLRAAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 225 NLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRP 280
N++ + G+ LDFG++ + + + + + D+ + E V P
Sbjct: 290 NIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 281 GTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLAS 340
T + + A+ E F + D+ +VL +++S + +++ + P L+ +++ +
Sbjct: 350 TTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 341 LEGLAIAGDPHFKTFEAAYPFV 362
+EGL + DP ++ A P++
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL 430
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 170/362 (46%), Gaps = 26/362 (7%)
Query: 8 ALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIV 67
+L +L D++PPFP A IIE+ LG+PV F+ S +P+A+AS QV+ + +G V
Sbjct: 87 SLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLPNGQKV 146
Query: 68 AVKVQRPNLRHVVVRDIYILRIGLGLLQKI---AKRKSDLRLYADELGKGLVGELDYTLE 124
VKV RP + V+ +D+ ++ + GLL+K KR + + AD + ELD E
Sbjct: 147 VVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVAD-YDSTIHDELDLQRE 205
Query: 125 AANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTH 184
AANAS+ + + P I++P + +RK VL ME + G D+ +L
Sbjct: 206 AANASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGIPIADVPAL------------ 253
Query: 185 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIG----FLDFG 240
+K R+ L KGVE Q+ HAD HPGN+ S +DFG
Sbjct: 254 ---EKAGVNMRV--LAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFG 308
Query: 241 LLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEF 300
++ + Q + +++ D++ + + V P T + + E F
Sbjct: 309 IVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIR-TVCEPIF 367
Query: 301 KDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYP 360
+ + D+ F L +++ A +++ + P L+ ++L ++EGL P + A P
Sbjct: 368 ERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQP 427
Query: 361 FV 362
F+
Sbjct: 428 FL 429
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 177/382 (46%), Gaps = 48/382 (12%)
Query: 2 LLIISIA--LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY-- 57
LL + IA L++L DQ+PPF ++A+ ++E+ LG+PV+ F PVA+AS QV+
Sbjct: 76 LLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAPVDVLFDDFERVPVASASIAQVHFA 135
Query: 58 --RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD------ 109
+ G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 136 TVKAGQHAGKAVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKP 186
Query: 110 -----ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGE 164
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG
Sbjct: 187 REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVG- 245
Query: 165 SPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPG 224
P + + VD + L +GVE Q+ G HAD HPG
Sbjct: 246 VPISQVETLRAAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 225 NLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRP 280
N++ + G+ LDFG++ + + + + + D+ + E V P
Sbjct: 290 NIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349
Query: 281 GTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLAS 340
T + + A+ E F + D+ +VL +++S + +++ + P L+ +++ +
Sbjct: 350 TTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 341 LEGLAIAGDPHFKTFEAAYPFV 362
+EGL + DP ++ A P++
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL 430
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 176/378 (46%), Gaps = 48/378 (12%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLD- 63
I+ L++L DQ+PPF ++A+ IIE+ LG+PV++ F PVA+AS QV+ +TL
Sbjct: 81 IATELAKLQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFERVPVASASIAQVH-FATLKI 139
Query: 64 ----GSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD---------- 109
G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 140 GQHAGKQVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKPREVV 190
Query: 110 -ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTD 168
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG P
Sbjct: 191 AEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEYCTANVLVMERMVG-VPIS 249
Query: 169 LISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRY 228
+ + VD + L +GVE Q+ G HAD HPGN++
Sbjct: 250 QVDTLRVAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQV 293
Query: 229 TSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNT 284
+ G+ LDFG++ + + + + + D+ + E V P T
Sbjct: 294 SLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWV-PATTR 352
Query: 285 LRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGL 344
+ A+ E F + D+ +VL +++S + +++ + P L+ +++ ++EGL
Sbjct: 353 VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGL 412
Query: 345 AIAGDPHFKTFEAAYPFV 362
+ DP ++ A P++
Sbjct: 413 GRSLDPELDLWKTAKPYL 430
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 176/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF A+ +IEE+LG+ V FS EP+A+AS QV+ G
Sbjct: 89 IADELMLLQDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGE 118
V VKV RP L+ V+ +D+ L L+ K A+R S RL+ E+ K + E
Sbjct: 149 EEVVVKVVRPGLKPVIAQDL----AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDE 204
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + ++VP+V+ L R +VL ME + G TD+++L+
Sbjct: 205 LDLLREAANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMVTLAD---- 260
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 261 ---------QRTDMKL----LAERGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQY 307
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + +++ D++ + + V T +
Sbjct: 308 IAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAHTKVNEFEAAIR-T 366
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 427 WSTAKPFL 434
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 173/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF +MK+IEE+LG + FS +P+A+AS QV+ G
Sbjct: 88 IADELMLLQDRVPPFDSQQSMKLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS-DLRLY-----ADELGKGLVGE 118
V VKV RP L+ ++ +D+ L I L + A+R S D RL + K + E
Sbjct: 148 EEVVVKVIRPGLKPIIGQDLAWLFI----LARAAERFSADARLLHPVDVVADYEKTIYDE 203
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L+
Sbjct: 204 LDLLREAANASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGVQVTDLATLAD---- 259
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 260 ---------QRTDMKM----LAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQY 306
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + ++ D++ + + V P L
Sbjct: 307 IAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRT 365
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 366 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 426 WNTAQPFL 433
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 175/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF A+ +IEE+LG+ V FS EP+A+AS QV+ G
Sbjct: 89 IADELMLLQDRVPPFDPQHAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKSG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGE 118
V VKV RP L+ V+ +D+ L L+ K A+R S RL+ E+ K + E
Sbjct: 149 EEVVVKVVRPGLKPVIAQDL----AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDE 204
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + ++VP+V+ L R +VL ME + G TD+ +L+
Sbjct: 205 LDLLREAANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD---- 260
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 261 ---------QRTDMKM----LAERGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQY 307
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + +++ D++ + + V T +
Sbjct: 308 IAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAQTKVNEFEAAIR-T 366
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 427 WSTAKPFL 434
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 9 LSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGSTLDG 64
L++L DQ+PPF ++A+ I+E+ LG+ ++ F PVA+AS QV+ + G
Sbjct: 85 LAKLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKG 144
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDYT 122
VAVKV RPN+ V+ D+ ++R +++ R+ R E K L ELD
Sbjct: 145 KAVAVKVLRPNMLPVIDSDLALMRDIATWAERLWADGRRLKPREVVAEFDKYLHDELDLM 204
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSS 182
EAAN S+ + + + + VP++F S VL ME M G P + + VD
Sbjct: 205 REAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTG-VPISQVDTLRAAGVD--- 260
Query: 183 THLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLD 238
+ L +GVE Q+ G HAD HPGN++ + G+ LD
Sbjct: 261 -------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALD 307
Query: 239 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV 298
FG++ + + + + + D+ + E V P T + + A+ E
Sbjct: 308 FGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEP 366
Query: 299 EFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAA 358
F + D+ +VL +++S + +++ + P L+ +++ ++EGL + DP ++ A
Sbjct: 367 YFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTA 426
Query: 359 YPFVIQKLLTEN 370
P+ +++ +TE
Sbjct: 427 KPY-LERWMTEQ 437
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF A+ +IEE+LG+ V FS EP+A+AS QV+ G
Sbjct: 89 IADELMLLQDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGE 118
V VKV RP L+ V+ +D+ L L+ K A+R S RL+ E+ K + E
Sbjct: 149 EEVVVKVVRPGLKPVIAQDL----AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDE 204
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + ++VP+V+ L R +VL ME + G TD+ +L+
Sbjct: 205 LDLLREAANASQLRRNFEDSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD---- 260
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 261 ---------QRTDMKL----LAERGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQY 307
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + ++ D++ + + V T +
Sbjct: 308 IAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPANTKVNEFEAAIR-T 366
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 367 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 355 FEAAYPFV 362
+ A P++
Sbjct: 427 WSTAKPYL 434
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 195/439 (44%), Gaps = 53/439 (12%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS--TL 62
I+ L+ L D++PPFP ++A+ IE PV F E P+A+AS QV+ + T
Sbjct: 82 IADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDETPIASASIAQVHFATIRTD 141
Query: 63 DGSI--VAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGE 118
+G + VAVKV RP++R V+ +D+ ++ + G ++K++ L R E K L E
Sbjct: 142 EGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVEKLSPDGKRLKPREVVGEFDKYLHDE 201
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANA++ + + + + +P++F V+ ME M G P + + V
Sbjct: 202 LDLVREAANAAQLRRNMASLELVLIPEMFWDFCHPEVIVMERMNG-VPIAQLDRLRAAGV 260
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYT----SSGQI 234
D + L GV Q+ G HAD HPGN++ + + G+
Sbjct: 261 D----------------IPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRY 304
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
LDFG++ + + + + V D++ + E V GT +LE A
Sbjct: 305 ISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESGWVPEGTR----IDELEGA 360
Query: 295 L---GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPH 351
+ E F + ++ VL +++ + ++H + P L+ ++L ++EGL DP
Sbjct: 361 IRTVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPE 420
Query: 352 FKTFEAAYPF-------------VIQKLLTENSVATR------KILHSVVFNKKKEFQWQ 392
+ A PF + Q+L E + ++LH + N+ + + +
Sbjct: 421 LDLWHTAKPFLEKWMVDQIGPKKLFQQLKAEAPRYAKLLPELPRLLHDFLENRPADHRRE 480
Query: 393 RLSLFLRVGATRKGLQQVI 411
L L T + LQ +I
Sbjct: 481 LLELLAAQKRTNRLLQTII 499
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 176/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I + L+ L D + PF + +I+E LG+ V F+ + EP+A+AS QV+ DG
Sbjct: 81 IVLELNHLQDNVTPFSKGEFQRIVESSLGASVAEVFASFNIEPLASASVAQVHTAVLKDG 140
Query: 65 SIVAVKVQRPNLRHVVVRDI-YILRIGLGLLQKI--AKRKSDLRLYADELGKGLVGELDY 121
V +KV RP + V+ +DI +LR+ + KR + + D + ELD
Sbjct: 141 REVVIKVIRPGIDKVIAQDIALLLRVARWVENNTLDGKRLHPVEIVED-YRTTIFDELDL 199
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAAN S+ + + P ++VP+V+ +R VL ME + G TDL +L+
Sbjct: 200 QREAANGSQLRRNFLNSPLLYVPEVYWEYTRTNVLVMERIYGIPVTDLAALNA------- 252
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFL 237
Q+ D K L +GVE Q+ E HAD HPGN+ + S+ Q +
Sbjct: 253 ------QQTDMK----KLAERGVEIFFTQVFEHNFFHADMHPGNIFVAHEHPSAPQYIAV 302
Query: 238 DFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA--- 294
D ++ + R Q+ + +++ + D++ + E V + +RV +LE A
Sbjct: 303 DMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESGWV---PSHVRVE-ELEAAVRT 358
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + ++ F++VL ++ A ++ + P L+ ++L ++EGL P
Sbjct: 359 VCEPIFEKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 418
Query: 355 FEAAYPFV 362
+ A+PF+
Sbjct: 419 WATAHPFL 426
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 171/365 (46%), Gaps = 26/365 (7%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L D++PPF ++ +IEE+LG+ V+ F+ EP+A+AS QV+ G
Sbjct: 89 IADELTWLQDRVPPFNPQQSVALIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLKTG 148
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRL--YADELGKGLVGELDYT 122
V VKV RP L+ V+ +D+ L + L ++ + L L + K + ELD
Sbjct: 149 EEVVVKVVRPGLKAVIRQDLAWLYLFARLAERASTEARRLHLVDVVSDYEKTIYDELDLL 208
Query: 123 LEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVD-GS 181
EAANAS+ + + P ++VP+++ R +VL ME + G TDL +L VD G+
Sbjct: 209 REAANASQLKRNFEGSPLLYVPQIYWDWCRPKVLVMERIYGVPVTDLAAL-----VDQGT 263
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFL 237
L L +GVE Q+ HAD HPGN+ R Q +
Sbjct: 264 DLKL-------------LAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYIAI 310
Query: 238 DFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGE 297
D G++ + + Q + +++ D++ + + V T + + E
Sbjct: 311 DCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVNEFEAAIR-TVCE 369
Query: 298 VEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEA 357
F+ + D+ F ++L +++ A +++ + P L+ ++L ++EGL P +
Sbjct: 370 PIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWTT 429
Query: 358 AYPFV 362
A PF+
Sbjct: 430 AKPFL 434
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 169/367 (46%), Gaps = 33/367 (8%)
Query: 12 LHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKV 71
L D++ PF A IIE LG VES F+ P+A+AS QV+ + D V VKV
Sbjct: 91 LQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKV 150
Query: 72 QRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANAS 129
RP++ H + DI +L+ L++ + R E+ L ELD E ANAS
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANAS 210
Query: 130 EFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQK 189
+ I+VP+V + +RVLT+E M G P+D I+L S +D +
Sbjct: 211 VLRRFWEASDDIYVPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA------- 262
Query: 190 LDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLC 243
L +KG+ Q+ HAD H GN+ S+ + LDFG++
Sbjct: 263 ---------LSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMG 313
Query: 244 RMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEF 300
++ +K Q+ + + + I + D++ + E + P +LE A + E F
Sbjct: 314 QLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVR----IEELEAAARSVCEPYF 369
Query: 301 KDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYP 360
+ + + V+ K++ +A +Y + P L+ ++L ++EG+ DP + A P
Sbjct: 370 TRPLSQISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429
Query: 361 FVIQKLL 367
V++++L
Sbjct: 430 -VLERIL 435
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 169/367 (46%), Gaps = 33/367 (8%)
Query: 12 LHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKV 71
L D++ PF A IIE LG VES F+ P+A+AS QV+ + D V VKV
Sbjct: 91 LQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKV 150
Query: 72 QRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANAS 129
RP++ H + DI +L+ L++ + R E+ L ELD E ANAS
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANAS 210
Query: 130 EFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQK 189
+ I+VP+V + +RVLT+E M G P+D I+L S +D +
Sbjct: 211 VLRRFWEASDDIYVPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA------- 262
Query: 190 LDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLC 243
L +KG+ Q+ HAD H GN+ S+ + LDFG++
Sbjct: 263 ---------LSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMG 313
Query: 244 RMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEF 300
++ +K Q+ + + + I + D++ + E + P +LE A + E F
Sbjct: 314 QLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVR----IEELEAAARSVCEPYF 369
Query: 301 KDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYP 360
+ + + V+ K++ +A +Y + P L+ ++L ++EG+ DP + A P
Sbjct: 370 TRPLSQISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429
Query: 361 FVIQKLL 367
V++++L
Sbjct: 430 -VLERIL 435
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 170/367 (46%), Gaps = 33/367 (8%)
Query: 12 LHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKV 71
L D++ PF A IIE LG VES F+ P+A+AS QV+ + DG V VKV
Sbjct: 91 LQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKV 150
Query: 72 QRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLR--LYADELGKGLVGELDYTLEAANAS 129
RP++ H + DI +L+ L++ +R E+ L ELD E ANAS
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPCEIVAEIETTLAAELDLQREGANAS 210
Query: 130 EFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQK 189
+ I+VP+V + ++VLT+E M G P+D I+L S +D +
Sbjct: 211 VLRRFWEASDDIYVPEVIWSHTAEQVLTLERMYG-IPSDDIALLDASGIDRKA------- 262
Query: 190 LDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLC 243
L +KG+ Q+ HAD H GN+ S+ + LDFG++
Sbjct: 263 ---------LSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMG 313
Query: 244 RMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEF 300
++ +K Q+ + + + I + D++ + E + P +LE A + E F
Sbjct: 314 QLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVR----IEELEAAARSVCEPYF 369
Query: 301 KDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYP 360
+ + + VL K++ +A +Y + P L+ ++L ++EG+ DP + A P
Sbjct: 370 TRPLSQISLAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429
Query: 361 FVIQKLL 367
V++++L
Sbjct: 430 -VLERIL 435
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 176/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF + +A+K+IEE+LG+ + FS E+P+A+AS QV+ G
Sbjct: 88 IADELMLLQDRVPPFDQQLAIKLIEEQLGARICDVFSRFDEKPLASASVAQVHAACLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS-DLRLYAD-----ELGKGLVGE 118
V VKV RP L+ ++ +D+ L I L ++A+R S D RL + K + E
Sbjct: 148 EEVVVKVVRPGLKPIIGQDLAWLFI----LARMAERVSADARLLHPVQVVMDYEKTIYDE 203
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + ++VP+V+ R +VL ME + G TD+ L+
Sbjct: 204 LDLLREAANASQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD---- 259
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ + +
Sbjct: 260 ---------QRTDMKL----LAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKY 306
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + ++ D++ + + V P L
Sbjct: 307 IAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRT 365
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 366 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDL 425
Query: 355 FEAAYPFV 362
+ A P++
Sbjct: 426 WSTAQPYL 433
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 169/367 (46%), Gaps = 30/367 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF ++ +IE +LG + FS EP+A+AS QV+ G
Sbjct: 88 IADELMLLQDRVPPFDSQKSVALIEAQLGKKISDVFSRFDIEPLASASVAQVHAAKLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLY-----ADELGKGLVGEL 119
V VKV RP L+ ++ +D+ L I L + K +D RL + K + EL
Sbjct: 148 EEVVVKVIRPGLKPIIAQDLAWLFI---LARAAEKLSADARLLHPVDVVSDYEKTIYDEL 204
Query: 120 DYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVD 179
D EAANAS+ + + P ++VP+V+ R +VL ME + G TDL +L+
Sbjct: 205 DLLREAANASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLAD----- 259
Query: 180 GSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQIG 235
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 260 --------QRTDMKM----LAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYI 307
Query: 236 FLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL 295
+D G++ + + Q + ++ D++ + + V P L +
Sbjct: 308 AIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRTV 366
Query: 296 GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTF 355
E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P +
Sbjct: 367 CEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLW 426
Query: 356 EAAYPFV 362
A PF+
Sbjct: 427 NTAQPFL 433
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF + +A+K+IEE+LG+ + FS E P+A+AS QV+ G
Sbjct: 88 IADELMLLQDRVPPFDQQVAIKLIEEQLGARICDVFSRFDETPLASASVAQVHAACLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS-DLRLYAD-----ELGKGLVGE 118
V VKV RP L+ ++ +D+ L I L ++A+R S D RL + K + E
Sbjct: 148 EEVVVKVVRPGLKPIIGQDLAWLFI----LARMAERVSADARLLHPVQVVMDYEKTIYDE 203
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAAN+S+ + + ++VP+V+ R +VL ME + G TD+ L+
Sbjct: 204 LDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD---- 259
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ + +
Sbjct: 260 ---------QRTDMKM----LAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKY 306
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + ++ D++ + + V P L
Sbjct: 307 IAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRT 365
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 366 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDL 425
Query: 355 FEAAYPFV 362
+ A P++
Sbjct: 426 WSTAQPYL 433
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF A+ +IE +LG+ V FS EP+A+AS QV+ G
Sbjct: 88 IADELMLLQDRVPPFDPKQAVALIESQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGE 118
V VKV RP L+ V+ +D+ L L+ K A+R S RL+ E+ K + E
Sbjct: 148 EEVVVKVVRPGLKPVIAQDL----AWLFLIAKGAERASADARRLHPVEIVGDYEKTIYDE 203
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + ++VP+V+ L R +VL ME + G TD+ +L+
Sbjct: 204 LDLLREAANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD---- 259
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ S Q
Sbjct: 260 ---------QRTDMKL----LAERGVEVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQY 306
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + +++ D++ + + V T +
Sbjct: 307 IAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDSGWVPAHTKVNEFEAAIR-T 365
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 366 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 355 FEAAYPFV 362
+ A PF+
Sbjct: 426 WSTAKPFL 433
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 174/368 (47%), Gaps = 32/368 (8%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L L D++PPF + +A+ +IEE+LG+ + FS E P+A+AS QV+ G
Sbjct: 88 IADELMLLQDRVPPFDQQVAINLIEEQLGARICDVFSRFDETPLASASVAQVHAACLKTG 147
Query: 65 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKS-DLRLYAD-----ELGKGLVGE 118
V VKV RP L+ V+ +D+ L I L ++A+R S D RL + K + E
Sbjct: 148 EEVVVKVVRPGLKPVIGQDLAWLFI----LARMAERVSADARLLHPVQVVMDYEKTIYDE 203
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAAN+S+ + + ++VP+V+ R +VL ME + G TD+ L+
Sbjct: 204 LDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD---- 259
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTS----SGQI 234
Q+ D K L +GVE Q+ HAD HPGN+ ++ S +
Sbjct: 260 ---------QRTDMKL----LAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKY 306
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ + + Q + ++ D++ + + V P L
Sbjct: 307 IAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRT 365
Query: 295 LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKT 354
+ E F+ + D+ F +VL +++ A +++ + P L+ ++L ++EGL P
Sbjct: 366 VCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 355 FEAAYPFV 362
+ A P++
Sbjct: 426 WSTAQPYL 433
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 174/366 (47%), Gaps = 27/366 (7%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS-TLD 63
I+ L+ L D++PPF A IEE LG PVE+ F E P+A+AS QV+ G +
Sbjct: 86 IAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDDFDETPLASASIAQVHTGRLKEN 145
Query: 64 GSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRL--YADELGKGLVGELDY 121
G + +KV RP++ V+ D+ +++ L+ + + + LR +E K ++ EL+
Sbjct: 146 GREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVPQSARLRPIEVVEEYRKTILDELNL 205
Query: 122 TLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
EAANA + + + + ++VP+VF R+ VL ME + G +D+ +L +G+
Sbjct: 206 MREAANAIQLRRNFTGSDALYVPEVFTEHCREHVLVMERIYGIPVSDIPALEA----NGT 261
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQ-----IGF 236
+ L L +GVE Q+ HAD HPGN+ + IG
Sbjct: 262 NMKL-------------LAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPDNPLWIG- 307
Query: 237 LDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALG 296
+D G++ + R+ + + + + N D++ + E V P T + L
Sbjct: 308 IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLE 367
Query: 297 EVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFE 356
+ F+ + ++ F VL +++ A +++ + P L+ ++L +EGL P ++
Sbjct: 368 PI-FEKPLSEISFGHVLLNLFNTARRFNMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
Query: 357 AAYPFV 362
A P++
Sbjct: 427 TAKPYL 432
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 171/367 (46%), Gaps = 33/367 (8%)
Query: 12 LHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKV 71
L D++ PF A IIE LG VES F+ P+A+AS QV+ + D V VKV
Sbjct: 91 LQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKV 150
Query: 72 QRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANAS 129
RP++ H + DI +L+ L++ + R E+ L ELD E ANAS
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANAS 210
Query: 130 EFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQK 189
+ I+VP+V + +RVLT+E M G P+D I+L S +D +
Sbjct: 211 VLRRFWEASDDIYVPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA------- 262
Query: 190 LDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLC 243
L +KG+ Q+ HAD H GN+ S+ + LDFG++
Sbjct: 263 ---------LSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMG 313
Query: 244 RMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEF 300
++ +K Q+ + + + I + D++ + E + +R+ +LE A + E F
Sbjct: 314 QLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWI---PQHVRIE-ELEAAARSVCEPYF 369
Query: 301 KDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYP 360
+ + + VL K++ +A +Y + P L+ ++L ++EG+ DP + A P
Sbjct: 370 TRPLSQISLAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429
Query: 361 FVIQKLL 367
V++++L
Sbjct: 430 -VLERIL 435
>sp|Q0I208|UBIB_HAES1 Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus somnus
(strain 129Pt) GN=ubiB PE=3 SV=1
Length = 544
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 174/379 (45%), Gaps = 35/379 (9%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDG 64
I+ L+ L D + F IA + IE+ LGS +E++F+ E +A+AS QV+ G
Sbjct: 86 IADELALLQDNVEAFSGKIARQQIEQALGSSLENWFTDFDENALASASIAQVHTAKLKLG 145
Query: 65 SI----VAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYA--DELGKGLVGE 118
V +KV RPN++ + D+ + GLL K+ + LR E K L E
Sbjct: 146 EEQEKEVVIKVLRPNIQPQIEADLSWMYKLAGLLPKLFREGYRLRAVEVIQEYEKTLRDE 205
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD +E ANA + +E+ P +++PK++ K V+ ME + G +D+ +L
Sbjct: 206 LDLRVEMANAIKLRENFLDSPMLYIPKMYEAFCHKNVIVMERIYGIPVSDVETLQR---- 261
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQI 234
+G+ L L +GV+ Q+ HAD HPGN+ Y + Q
Sbjct: 262 NGTDMKL-------------LAERGVQVFFTQVFRDSFFHADMHPGNIFVNPHYPENPQY 308
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
+D G++ ++ + + S V N D++ + + TN D E A
Sbjct: 309 IGIDCGIVGKLNESDKRYLAESFVAFFNRDYRRVAQMHVDAGWTPQDTN----IDDFEQA 364
Query: 295 LGEVE---FKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPH 351
EV F + ++ F++VL ++++A +++ ++ P L+ ++L +EGL P
Sbjct: 365 FREVCEPIFAKPLSEISFAQVLLNLFNVAREFNMQVQPQLVLLQKTLLYIEGLGRQLYPQ 424
Query: 352 FKTFEAAYPFVIQKLLTEN 370
++ A PF +Q L E
Sbjct: 425 LDLWDTAKPF-LQNWLNEQ 442
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 175/384 (45%), Gaps = 41/384 (10%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRG----- 59
I+ L+ L DQ+ PF IA IE+ LG+P+E++F +E +A+AS QV+
Sbjct: 86 IADELALLQDQVDPFDGKIARAQIEKALGAPLETWFDEFNETALASASIAQVHTAKFKQN 145
Query: 60 -----STLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLR--LYADELG 112
+ L G V +KV RPN++ ++ D+ ++ + +I LR E
Sbjct: 146 APHLENRLAGKEVVLKVLRPNIQQMINADLSLMYKVASWIPRIKAEGRRLRPVEVVREYE 205
Query: 113 KGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISL 172
K L ELD E ANA + + + P +++P++++ + V+ ME + G I +
Sbjct: 206 KNLRDELDLRREMANAIQLRANFENSPMLYIPEMYKQFCHQTVIVMERIYG------IPV 259
Query: 173 STGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RY 228
S + + T++ KL L +GV+ Q+ HAD HPGN+ +
Sbjct: 260 SNIEELHANGTNM---KL--------LAERGVQVFFTQVFRDSFFHADMHPGNIFVNRAH 308
Query: 229 TSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVT 288
Q +D G++ R+ + + S V N D++ + EM V T
Sbjct: 309 PDDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYR----RVAEMHVASGWTPKDTNI 364
Query: 289 MDLEDALGEVE---FKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLA 345
D E A EV F + ++ F VL ++++A +Y+ + P L+ ++L +EGL
Sbjct: 365 DDFEQAFREVCEPIFAKPLSEISFGHVLLNLFNVAREYNMEVQPQLVLLQKTLLYIEGLG 424
Query: 346 IAGDPHFKTFEAAYPFVIQKLLTE 369
P ++ A PF +QK L E
Sbjct: 425 RQLYPQLDLWDTAKPF-LQKWLDE 447
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 165/371 (44%), Gaps = 34/371 (9%)
Query: 5 ISIALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RGS 60
++ L++L D++PPF IA I+E LG P+ + F PVA+AS QV+ RG
Sbjct: 82 VADELAKLQDRVPPFDPKIAAAIVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGG 141
Query: 61 TLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGE 118
DG VAVKV RP + V+ D+ ++R ++K+ L R E K L E
Sbjct: 142 PDDGREVAVKVLRPGMLPVIDSDLALMRDVATWMEKLWADGKRLKPREVVAEFDKYLHDE 201
Query: 119 LDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSV 178
LD EAANAS+ + + + + VP+VF V ME M G +S +
Sbjct: 202 LDLMREAANASQLRRNFAKSELLLVPEVFWDWCTSEVFVMERMHGVR----VSHADELRA 257
Query: 179 DGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYT----SSGQI 234
G TH L GVE Q+ G HAD HPGN+ + S G+
Sbjct: 258 AGVDTH-------------KLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRY 304
Query: 235 GFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA 294
LDFG++ + + + + + D+ H + + V +LE A
Sbjct: 305 IALDFGIVGALSEFDKNYLAQNFLAFFQRDY----HRVALLHVESGWAPEETRVEELEGA 360
Query: 295 L---GEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPH 351
+ E F + ++ VL +++ + +++ + P L+ ++L ++EGL DP
Sbjct: 361 IRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPD 420
Query: 352 FKTFEAAYPFV 362
++ A PF+
Sbjct: 421 LDLWKTAKPFL 431
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 19/342 (5%)
Query: 8 ALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIV 67
AL+ L +PP P S +++ E P+ F I EP+AA S GQ++R G V
Sbjct: 78 ALTALQSNVPPLPWSAIEDLLQREFPQPLGETFQEIESEPIAAGSIGQIHRAVLQSGETV 137
Query: 68 AVKVQRPNLRHVVVRDIYILRIGLGLLQKIA-KRKSDLRLYADELGKGLVGELDYTLEAA 126
A+KV+RP + +V +D +++ LL + D+ ADE + + EL++ EAA
Sbjct: 138 AIKVKRPGIDVIVEQDSLLIKDVAELLALTEFGQNYDIVKLADEFTQTVKAELNFDTEAA 197
Query: 127 NASEFQESHSPFPFIH-----VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGS 181
+ + + + + +PKV+ L+ ++ L +EW+ G + + T
Sbjct: 198 YTNNLRTNLAKTTWFDPNQLVIPKVYWELTNQKFLVLEWLDG------VPILTADLTQPP 251
Query: 182 STHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGL 241
S D+ + K + L+ + A QL G HADPHPGN+ Y + G++ +D G+
Sbjct: 252 S---DKDIAEKKKEITTLLFR---AFFQQLYVDGFFHADPHPGNIFYLADGRLALIDCGM 305
Query: 242 LCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFK 301
+ R++ + + + ++ IV+ D + E+ N R+ +D E L + +
Sbjct: 306 VGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSESVGRVNFQRLEVDYERMLRKY-YD 364
Query: 302 DGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEG 343
+ + FS V+ + IA ++P L + LA+LEG
Sbjct: 365 LSLSEFNFSEVVYEFLRIARVNKLKVPACLGLYAKCLANLEG 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,370,296
Number of Sequences: 539616
Number of extensions: 8661107
Number of successful extensions: 23519
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 22647
Number of HSP's gapped (non-prelim): 247
length of query: 601
length of database: 191,569,459
effective HSP length: 123
effective length of query: 478
effective length of database: 125,196,691
effective search space: 59844018298
effective search space used: 59844018298
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)