Your job contains 1 sequence.
>007509
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ
RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF
KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA
LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD
SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER
NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF
AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMM
IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVY
ESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLW
R
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007509
(601 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156181 - symbol:AT5G61970 species:3702 "Arabi... 2323 5.1e-241 1
UNIPROTKB|A6QQW3 - symbol:SRP68 "Uncharacterized protein"... 758 3.5e-75 1
UNIPROTKB|F1PI42 - symbol:SRP68 "Signal recognition parti... 753 1.2e-74 1
UNIPROTKB|Q00004 - symbol:SRP68 "Signal recognition parti... 753 1.2e-74 1
UNIPROTKB|Q9UHB9 - symbol:SRP68 "Signal recognition parti... 749 3.1e-74 1
MGI|MGI:1917447 - symbol:Srp68 "signal recognition partic... 743 1.4e-73 1
UNIPROTKB|F1RW08 - symbol:SRP68 "Uncharacterized protein"... 730 3.2e-72 1
UNIPROTKB|F1P0P4 - symbol:SRP68 "Uncharacterized protein"... 724 1.4e-71 1
UNIPROTKB|G3V1U4 - symbol:SRP68 "Signal recognition parti... 631 3.3e-69 2
ZFIN|ZDB-GENE-040831-3 - symbol:srp68 "signal recognition... 695 1.7e-68 1
RGD|1305376 - symbol:Srp68 "signal recognition particle 6... 621 4.7e-68 2
UNIPROTKB|F5H5Y3 - symbol:SRP68 "Signal recognition parti... 666 2.0e-65 1
FB|FBgn0035947 - symbol:Srp68 "Signal recognition particl... 628 2.1e-61 1
WB|WBGene00010097 - symbol:F55C5.8 species:6239 "Caenorha... 515 2.0e-49 1
DICTYBASE|DDB_G0285821 - symbol:srp68 "signal recognition... 420 4.5e-38 1
ASPGD|ASPL0000011229 - symbol:AN4043 species:162425 "Emer... 196 3.7e-26 2
UNIPROTKB|G4NF58 - symbol:MGG_04190 "Uncharacterized prot... 188 3.1e-11 1
>TAIR|locus:2156181 [details] [associations]
symbol:AT5G61970 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR026258 PIRSF:PIRSF038995 GO:GO:0005829
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB022212 GO:GO:0008312
GO:GO:0006614 GO:GO:0005786 GO:GO:0005047 GO:GO:0030942
eggNOG:NOG325632 KO:K03107 HOGENOM:HOG000231195 OMA:KAAMEAF
EMBL:AY051002 EMBL:AY079306 IPI:IPI00539653 RefSeq:NP_568947.1
UniGene:At.20648 STRING:Q9FH46 PaxDb:Q9FH46 PRIDE:Q9FH46
EnsemblPlants:AT5G61970.1 GeneID:836318 KEGG:ath:AT5G61970
TAIR:At5g61970 InParanoid:Q9FH46 PhylomeDB:Q9FH46
ProtClustDB:CLSN2690063 ArrayExpress:Q9FH46 Genevestigator:Q9FH46
Uniprot:Q9FH46
Length = 605
Score = 2323 (822.8 bits), Expect = 5.1e-241, P = 5.1e-241
Identities = 459/603 (76%), Positives = 514/603 (85%)
Query: 3 KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXX 62
K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGD
Sbjct: 4 KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63
Query: 63 XXKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
KSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct: 64 LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123
Query: 123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L FK+
Sbjct: 124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183
Query: 183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct: 184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243
Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
LFK+K+EA M EARSQQAASLTEF WLG+RFP+SN K+RV+ILKAQELEK+L A+SL
Sbjct: 244 LFKAKIEAAMEEARSQQAASLTEFSWLGYRFPVSNPKSRVSILKAQELEKELQSPTAESL 303
Query: 303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
PAEKKL IFDK+FTAYH+AR IRSDL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct: 304 PAEKKLTIFDKLFTAYHDARNTIRSDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363
Query: 363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
LLV + K KL ++RDDK KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct: 364 LLVKVAKSKLNRKRDDKNDKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423
Query: 423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIE 482
EC+ SLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL FQ +A D+ I+
Sbjct: 424 ECQRTSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDEGTIQ 483
Query: 483 ELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVD-KFLLEKLDVYE 541
ELKTL KECR+NSCIEHA GIM EE+A ENLSN++ST+S++ T +V+ K+LL+KLDVYE
Sbjct: 484 ELKTLIKECRANSCIEHATGIMEEERAPENLSNRMSTISLNNTAAQVEEKYLLDKLDVYE 543
Query: 542 SAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGF----IS 597
SAVGDSN K A +IE FPPA QSI RNPIVLDLAYN IDFP +ENRMKK + GF IS
Sbjct: 544 SAVGDSNTKTAPKIERFPPALQSIPRNPIVLDLAYNCIDFPVIENRMKK-KGGFFSSRIS 602
Query: 598 RLW 600
LW
Sbjct: 603 SLW 605
>UNIPROTKB|A6QQW3 [details] [associations]
symbol:SRP68 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042493 "response to drug" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR026258
PIRSF:PIRSF038995 GO:GO:0042493 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 GO:GO:0005047 GO:GO:0030942 eggNOG:NOG325632
GeneTree:ENSGT00390000011856 KO:K03107 CTD:6730
HOGENOM:HOG000231195 HOVERGEN:HBG059793 OrthoDB:EOG4V9TQB
OMA:KAAMEAF EMBL:DAAA02049506 EMBL:BC150016 IPI:IPI00914500
RefSeq:NP_001094649.2 UniGene:Bt.59984 STRING:A6QQW3
Ensembl:ENSBTAT00000012161 GeneID:538777 KEGG:bta:538777
InParanoid:A6QQW3 NextBio:20877573 Uniprot:A6QQW3
Length = 623
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 195/583 (33%), Positives = 313/583 (53%)
Query: 22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
+ G S+ +LQ++K +Q QHGLRHGD K+L F G R K+T K
Sbjct: 50 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109
Query: 81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
+TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 168
Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E
Sbjct: 169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227
Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++Q
Sbjct: 228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286
Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
AA+++E W G P+ K R+ +L + E + A+S +++L F+ + +
Sbjct: 287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 342
Query: 320 EARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVS-IVKG 370
+A +R +L S A + E+ K +L L ++ + I+RN+ + + K
Sbjct: 343 DAIQAVREELKSDQKQRDYALDVESGKVSNLQYLHSYLTYIKLSTAIKRNENMAKGLQKA 402
Query: 371 KLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLA 430
L +Q +D + + +P++L+RLYD++LQN +L L G E E+ F +E LK+L
Sbjct: 403 LLQQQPEDDSKRAPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLV 457
Query: 431 FRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKE 490
++A RCF++A+SY L K EA LY R +A+ D NS + + +++ L +
Sbjct: 458 YKAYRCFFIAQSYVLVKKWNEALVLYDRVLKYADEVNSDAGAFKNSLKDL-PDVQELITQ 516
Query: 491 CRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVK 550
RS C A I+ A + ++ S V K +K L+E+ + + + S V
Sbjct: 517 VRSEKCSLQAAAILDTNDAHQTETS--SQV-------KDNKPLVERFETF--CLDPSLVT 565
Query: 551 GAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
A + FPP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 566 KQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKAK 608
>UNIPROTKB|F1PI42 [details] [associations]
symbol:SRP68 "Signal recognition particle 68 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005047 "signal recognition particle binding"
evidence=IEA] InterPro:IPR026258 PIRSF:PIRSF038995 GO:GO:0008312
GO:GO:0006614 GO:GO:0005786 GO:GO:0005047 GO:GO:0030942
GeneTree:ENSGT00390000011856 OMA:KAAMEAF EMBL:AAEX03006287
Ensembl:ENSCAFT00000008082 Uniprot:F1PI42
Length = 618
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 195/582 (33%), Positives = 313/582 (53%)
Query: 22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
+ G S+ +LQ++K +Q QHGLRHGD K+L F G R K+T K
Sbjct: 46 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 105
Query: 81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
+TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 106 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 164
Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E
Sbjct: 165 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 223
Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++Q
Sbjct: 224 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 282
Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
AA+++E W G P+ K R+ +L + E + A+S +++L F+ + +
Sbjct: 283 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 338
Query: 320 EARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVSIVKGK 371
+A +R +L + E+ K +L L ++ + I RN+ + ++
Sbjct: 339 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA 398
Query: 372 LTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAF 431
L +Q +D++ + +P++L+RLYD++LQN +L L G E E+ F +E LK+L F
Sbjct: 399 LQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLVF 453
Query: 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKEC 491
+A RCF++A+SY L K +EA LY R +A D NS + + +++ L +
Sbjct: 454 KAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-PDVQELITQV 512
Query: 492 RSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKG 551
RS C A I+ AS+ S++ T S K +K L+E+ + + + S V
Sbjct: 513 RSEKCSLQAAAIL---DASD--SHQPETSS----QVKDNKPLVERFETF--CLDPSLVTK 561
Query: 552 AARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
A + FPP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 562 QANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 603
>UNIPROTKB|Q00004 [details] [associations]
symbol:SRP68 "Signal recognition particle 68 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] Reactome:REACT_86357 InterPro:IPR026258
PIRSF:PIRSF038995 GO:GO:0005829 GO:GO:0005730 GO:GO:0042493
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 Reactome:REACT_146484
GO:GO:0005047 GO:GO:0030942 eggNOG:NOG325632 KO:K03107 EMBL:X53744
PIR:A58947 RefSeq:NP_001003271.2 UniGene:Cfa.3809 STRING:Q00004
PRIDE:Q00004 GeneID:403952 KEGG:cfa:403952 CTD:6730
HOGENOM:HOG000231195 HOVERGEN:HBG059793 InParanoid:Q00004
OrthoDB:EOG4V9TQB NextBio:20817442 Uniprot:Q00004
Length = 622
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 195/582 (33%), Positives = 313/582 (53%)
Query: 22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
+ G S+ +LQ++K +Q QHGLRHGD K+L F G R K+T K
Sbjct: 50 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109
Query: 81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
+TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 168
Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E
Sbjct: 169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227
Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++Q
Sbjct: 228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286
Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
AA+++E W G P+ K R+ +L + E + A+S +++L F+ + +
Sbjct: 287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 342
Query: 320 EARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVSIVKGK 371
+A +R +L + E+ K +L L ++ + I RN+ + ++
Sbjct: 343 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA 402
Query: 372 LTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAF 431
L +Q +D++ + +P++L+RLYD++LQN +L L G E E+ F +E LK+L F
Sbjct: 403 LQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLVF 457
Query: 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKEC 491
+A RCF++A+SY L K +EA LY R +A D NS + + +++ L +
Sbjct: 458 KAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-PDVQELITQV 516
Query: 492 RSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKG 551
RS C A I+ AS+ S++ T S K +K L+E+ + + + S V
Sbjct: 517 RSEKCSLQAAAIL---DASD--SHQPETSS----QVKDNKPLVERFETF--CLDPSLVTK 565
Query: 552 AARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
A + FPP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 566 QANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 607
>UNIPROTKB|Q9UHB9 [details] [associations]
symbol:SRP68 "Signal recognition particle 68 kDa protein"
species:9606 "Homo sapiens" [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0005047 "signal recognition particle binding"
evidence=IPI] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0005840 "ribosome" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR026258 PIRSF:PIRSF038995
GO:GO:0005783 GO:GO:0005829 GO:GO:0005730 GO:GO:0042493
GO:GO:0006412 GO:GO:0005840 EMBL:CH471099 TCDB:3.A.5.9.1
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 GO:GO:0005047
GO:GO:0030942 eggNOG:NOG325632 KO:K03107 CTD:6730
HOGENOM:HOG000231195 HOVERGEN:HBG059793 OrthoDB:EOG4V9TQB
OMA:KAAMEAF EMBL:AF195951 EMBL:AK074698 EMBL:AK097962 EMBL:BC020238
IPI:IPI00102936 IPI:IPI00168388 RefSeq:NP_001247432.1
RefSeq:NP_055045.2 UniGene:Hs.514495 ProteinModelPortal:Q9UHB9
IntAct:Q9UHB9 STRING:Q9UHB9 PhosphoSite:Q9UHB9 DMDM:37154869
PaxDb:Q9UHB9 PeptideAtlas:Q9UHB9 PRIDE:Q9UHB9
Ensembl:ENST00000307877 GeneID:6730 KEGG:hsa:6730 UCSC:uc002jqk.1
GeneCards:GC17M074035 HGNC:HGNC:11302 HPA:HPA023303 MIM:604858
neXtProt:NX_Q9UHB9 PharmGKB:PA36126 InParanoid:Q9UHB9
PhylomeDB:Q9UHB9 ChiTaRS:Srp68 GenomeRNAi:6730 NextBio:26254
ArrayExpress:Q9UHB9 Bgee:Q9UHB9 CleanEx:HS_SRP68
Genevestigator:Q9UHB9 GermOnline:ENSG00000167881 Uniprot:Q9UHB9
Length = 627
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 198/604 (32%), Positives = 314/604 (51%)
Query: 2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
A E E S + + G S+ +LQ++K +Q QHGLRHGD
Sbjct: 33 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 92
Query: 62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
K+L F G R K+T K +TE +T+ R+L LVL AERAWS+AM+ +Q + R+
Sbjct: 93 RLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 151
Query: 121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
R +L+ RLRKAVK A LC + + D +T LEA+AY +Y+ G L FE Q W+ A++
Sbjct: 152 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEA 210
Query: 180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
F + +YE+L E VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G
Sbjct: 211 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 269
Query: 240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
L KLEA++ + R++QAA+++E W G P+ K R+ +L + E + V+A
Sbjct: 270 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAE 328
Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLAS---------AGNAENVKDDLFGLDKAVS 350
E K +F+ + + +A +R +L G V + L L ++
Sbjct: 329 SE---ETKERLFESMLSECRDAIQVVREELKPDQKQRDYILEGEPGKVSN-LQYLHSYLT 384
Query: 351 AVLGQRTIERNQLLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSS 409
+ I+RN+ + + + L +Q +D + + +P++L+RLYD++LQN +L L
Sbjct: 385 YIKLSTAIKRNENMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--P 442
Query: 410 GRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469
G E E+ F +E LK+L F+A RCF++A+SY L K +EA LY R +A D
Sbjct: 443 GLE---EDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSD 499
Query: 470 FQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKV 529
NS + + +++ L + RS C A I+ N +++ T S + K
Sbjct: 500 AGAFKNSLKDL-PDVQELITQVRSEKCSLQAAAIL-----DANDAHQTET---SSSQVKD 550
Query: 530 DKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMK 589
+K L+E+ + + + S V A + FPP FQ I P+ DLA N + FP LE++++
Sbjct: 551 NKPLVERFETF--CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLE 608
Query: 590 KDRK 593
+ K
Sbjct: 609 QKTK 612
>MGI|MGI:1917447 [details] [associations]
symbol:Srp68 "signal recognition particle 68" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISO] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=ISO]
InterPro:IPR026258 PIRSF:PIRSF038995 MGI:MGI:1917447 GO:GO:0005730
GO:GO:0042493 EMBL:CH466558 EMBL:AL669925 GO:GO:0008312
EMBL:AL645861 GO:GO:0006614 GO:GO:0005786 GO:GO:0005047
GO:GO:0030942 eggNOG:NOG325632 GeneTree:ENSGT00390000011856
KO:K03107 CTD:6730 HOGENOM:HOG000231195 HOVERGEN:HBG059793
OrthoDB:EOG4V9TQB OMA:KAAMEAF EMBL:AK033010 EMBL:BC070422
IPI:IPI00222977 RefSeq:NP_666144.3 UniGene:Mm.29655
ProteinModelPortal:Q8BMA6 STRING:Q8BMA6 PhosphoSite:Q8BMA6
PaxDb:Q8BMA6 PRIDE:Q8BMA6 Ensembl:ENSMUST00000021133 GeneID:217337
KEGG:mmu:217337 InParanoid:A2AAN1 NextBio:375773 Bgee:Q8BMA6
CleanEx:MM_SRP68 Genevestigator:Q8BMA6
GermOnline:ENSMUSG00000020780 Uniprot:Q8BMA6
Length = 625
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 197/603 (32%), Positives = 315/603 (52%)
Query: 2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
A E E S + + G S+ +LQ++K +Q QHGLRHGD
Sbjct: 32 AGGDENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 91
Query: 62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
K+L F G R K+T K +TE +T+ R+L LVL AERAWS+AM+ +Q + R+
Sbjct: 92 RLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 150
Query: 121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
R +L+ RLRKAVK A LC + + D +T LEA+AY +Y+ G L FE Q W++A++
Sbjct: 151 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKSAIEA 209
Query: 180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
F + +YE+L E VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G
Sbjct: 210 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 268
Query: 240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
L KLEA++ + R++QAA+++E W G P+ K R+ +L + E + V+A
Sbjct: 269 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAE 327
Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSA 351
E K +F+ + + +A +R +L A + E+ K +L L ++
Sbjct: 328 SE---ETKERLFESMLSECRDALQAVREELKPDQKQRDYALDGESGKVSNLQYLHSYLTY 384
Query: 352 VLGQRTIERNQLLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSG 410
+ I RN+ + + + L +Q +D + + +P++L+RLYD++LQN +L L G
Sbjct: 385 IKLSTAIRRNENMAKGLHRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PG 442
Query: 411 RERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDF 470
E E+ F +E LK+L F+A RCF++A+SY L K +EA LY R +A N +
Sbjct: 443 LE---EDRTFQKEISLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYA-NEVSSH 498
Query: 471 QRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVD 530
+ + + +++ L + RS C A I+ N S++ T S K +
Sbjct: 499 GGASKNSLKDLPDVQELITQVRSEKCSLQAAAIL-----DANDSHQTDTSS----QVKDN 549
Query: 531 KFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKK 590
L+E+ + + + S V A + FPP FQ I P+ DLA N + FP LE+++++
Sbjct: 550 TPLVERFESF--CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQ 607
Query: 591 DRK 593
K
Sbjct: 608 KTK 610
>UNIPROTKB|F1RW08 [details] [associations]
symbol:SRP68 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042493 "response to drug" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR026258
PIRSF:PIRSF038995 GO:GO:0042493 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 GO:GO:0005047 GO:GO:0030942
GeneTree:ENSGT00390000011856 OMA:KAAMEAF EMBL:CU928029
EMBL:CU694895 EMBL:FP680578 Ensembl:ENSSSCT00000018716
Uniprot:F1RW08
Length = 624
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 196/605 (32%), Positives = 316/605 (52%)
Query: 2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
A E E S + + G S+ +LQ++K +Q QHGLRHGD
Sbjct: 29 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 88
Query: 62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
K+L F G R K+T K +TE +T+ R+L LVL AERAWS+AM+ +Q + R+
Sbjct: 89 RLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 147
Query: 121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
R +L+ RLRKAVK A LC + + D +T LEA+AY +Y+ G L FE Q W+ A++
Sbjct: 148 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEA 206
Query: 180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
F + +YE+L E VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G
Sbjct: 207 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 265
Query: 240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
L KLEA++ + R++QAA+++E W G P+ + R+ +L + E + A
Sbjct: 266 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVPVKVDRVRIFLLGLADNEAA--IAQA 323
Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSA 351
+S +++L F+ + + +A +R +L + E+ K +L L ++
Sbjct: 324 ESEETKERL--FESMLSECRDAIQAVREELKPDQKQRDYPLDGESGKVSNLQYLHSYLTY 381
Query: 352 VLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVT-KPEELVRLYDLLLQNTADLSDLVSSG 410
+ I+RN+ + ++ L +Q+ + GK + +P++L+RLYD++LQN +L L G
Sbjct: 382 IKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPRPQDLIRLYDIILQNLVELLQL--PG 439
Query: 411 RERKPEEVKFAEECELKSLAFRAE--RCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468
E E+ F +E LK+L ++A RCF++A+SY L K +EA LY R +A+
Sbjct: 440 LE---EDRAFQKEIGLKTLVYKAYSVRCFFIAQSYVLVKKWSEALVLYDRVLKYADEVNS 496
Query: 469 DFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKK 528
D NS + + + L+ L + RS C A I+ N + T S K
Sbjct: 497 DAGAFKNSLKDLPDVLE-LISQVRSEKCCLQAAAIL-----DTNDPQQTETSS----QVK 546
Query: 529 VDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRM 588
+K L+E+ + + + S V A + FPP FQ + P+ DLA N + FP LE+++
Sbjct: 547 DNKPLVERFETF--CLDPSLVTKQANLVHFPPGFQPVPCKPLFFDLALNHVAFPPLEDKL 604
Query: 589 KKDRK 593
++ K
Sbjct: 605 EQKTK 609
>UNIPROTKB|F1P0P4 [details] [associations]
symbol:SRP68 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005047 "signal recognition particle binding"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] InterPro:IPR026258
PIRSF:PIRSF038995 GO:GO:0042493 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 GO:GO:0005047 GO:GO:0030942
GeneTree:ENSGT00390000011856 OMA:KAAMEAF EMBL:AADN02029956
IPI:IPI00574214 Ensembl:ENSGALT00000003210 Uniprot:F1P0P4
Length = 602
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 189/587 (32%), Positives = 311/587 (52%)
Query: 20 SDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTR 78
+D + + +LQ++K +Q QHGLRHGD K+L F G R K+T
Sbjct: 26 ADGLSDSLGLEILQIVKESQQQHGLRHGDFQRYRGYCSRRLRRLRKTLNFKMGNRHKFTG 85
Query: 79 KAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLF 138
K +TE +++ R+L L+L AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 86 KKVTEEILSDNRYLLLILMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEEL 144
Query: 139 SNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVE 197
LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E
Sbjct: 145 ERLCESNRVDAKTKLEAQAYMAYLTGMLRFEH-QEWKAAMEAFNKCKTIYEKLANAFTEE 203
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARS 257
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R+
Sbjct: 204 QAVLYNQRVEEISPNIRYCAYNIGDQSAM-NELMQMRLRSGGTEGLLAEKLEALITQTRA 262
Query: 258 QQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTA 317
+QAA+++E W G P+ K R+ +L + E + V+A + E+ +F+ + +
Sbjct: 263 KQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAENEETRER---LFESLLSE 318
Query: 318 YHEARGCIRSDL---------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV-SI 367
+A +R DL + G++ V + + L ++ + I+RN+ + S+
Sbjct: 319 CRDAIQAVREDLKPDQKQREHSLEGDSGKVSNIQY-LHSYLTYIKLSTAIKRNESMAKSL 377
Query: 368 VKGKLTKQRDDKTGKVT-KPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
K L +QR ++ GK T +P++L+RLYD++LQN +L+ L G E E+ F +E L
Sbjct: 378 QKALLQQQRSEEDGKRTPRPQDLIRLYDIILQNLVELTQL--PGLE---EDKSFQKEIGL 432
Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKT 486
K+L ++A RCF++A+SY L K +EA LY R +A NS + + +++
Sbjct: 433 KTLVYKAYRCFFIAQSYVLVKKWSEALVLYERVLKYAGEVQSGAGAFTNSLKEL-PDVQD 491
Query: 487 LCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGD 546
L + + A I+ A++N + S + K K L E+ + + +
Sbjct: 492 LITQVNAEKYSLQAAAIL---DANDNHETE------SPSQVKDGKPLSERFETF--CLDP 540
Query: 547 SNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
S V + FPP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 541 SLVSKQVSLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKVEQKAK 587
>UNIPROTKB|G3V1U4 [details] [associations]
symbol:SRP68 "Signal recognition particle 68 kDa protein"
species:9606 "Homo sapiens" [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR026258 PIRSF:PIRSF038995 GO:GO:0005737 EMBL:CH471099
EMBL:AC040980 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
GO:GO:0005047 GO:GO:0030942 KO:K03107 CTD:6730 UniGene:Hs.514495
GeneID:6730 KEGG:hsa:6730 HGNC:HGNC:11302 ChiTaRS:Srp68
RefSeq:NP_001247431.1 Ensembl:ENST00000539137 ArrayExpress:G3V1U4
Bgee:G3V1U4 Uniprot:G3V1U4
Length = 589
Score = 631 (227.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 169/515 (32%), Positives = 273/515 (53%)
Query: 90 RFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLC-AIKADP 148
R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A LC + + D
Sbjct: 84 RYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELERLCESNRVDA 142
Query: 149 RTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEE 208
+T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E VL +RVEE
Sbjct: 143 KTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEE 201
Query: 209 LEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHW 268
+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++QAA+++E W
Sbjct: 202 ISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 260
Query: 269 LGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSD 328
G P+ K R+ +L + E + V+A E K +F+ + + +A +R +
Sbjct: 261 RGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECRDAIQVVREE 316
Query: 329 LAS---------AGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVS-IVKGKLTKQRDD 378
L G V + L L ++ + I+RN+ + + + L +Q +D
Sbjct: 317 LKPDQKQRDYILEGEPGKVSN-LQYLHSYLTYIKLSTAIKRNENMAKGLQRALLQQQPED 375
Query: 379 KTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFY 438
+ + +P++L+RLYD++LQN +L L G E E+ F +E LK+L F+A RCF+
Sbjct: 376 DSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQKEIGLKTLVFKAYRCFF 430
Query: 439 LARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIE 498
+A+SY L K +EA LY R +A D NS + + +++ L + RS C
Sbjct: 431 IAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDL-PDVQELITQVRSEKCSL 489
Query: 499 HAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAF 558
A I+ N +++ T S + K +K L+E+ + + + S V A + F
Sbjct: 490 QAAAIL-----DANDAHQTET---SSSQVKDNKPLVERFETF--CLDPSLVTKQANLVHF 539
Query: 559 PPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
PP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 540 PPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 574
Score = 89 (36.4 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGD 48
A E E S + + G S+ +LQ++K +Q QHGLRHGD
Sbjct: 33 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGD 79
>ZFIN|ZDB-GENE-040831-3 [details] [associations]
symbol:srp68 "signal recognition particle 68"
species:7955 "Danio rerio" [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
InterPro:IPR026258 PIRSF:PIRSF038995 ZFIN:ZDB-GENE-040831-3
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 GO:GO:0005047
GO:GO:0030942 GeneTree:ENSGT00390000011856 EMBL:CR450715
IPI:IPI00495779 Ensembl:ENSDART00000124948 Bgee:F1QI99
Uniprot:F1QI99
Length = 617
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 182/605 (30%), Positives = 315/605 (52%)
Query: 5 SETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXX 64
+E + +++ + + I + +LQ++K +Q QHGLRHGD
Sbjct: 27 AEQNGVKMPSTEENKENSIDQSIGLEILQIIKDSQQQHGLRHGDYQRYRGYCSRRLRRLR 86
Query: 65 KSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIY 123
K+L F G R K+T K +T +++ R+L LVL AERAWS+AM+ +Q + R+R +
Sbjct: 87 KALGFKMGNRHKFTGKKVTVEMLSDNRYLLLVLMEAERAWSYAMQLKQEAN-TEPRKRFH 145
Query: 124 LIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
L+GRLRKA K LC + D +T LEA+AY +Y+ G + FE Q W++A++ F +
Sbjct: 146 LLGRLRKAAKHGDQLEKLCESPNVDAKTKLEAQAYTAYLTGMVQFEL-QEWKSAMEAFNN 204
Query: 183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
+ +YE+L E VL +RVEE+ P+IRYC + IG+ N ++L+Q+ G
Sbjct: 205 CKTIYEKLASAFTEEQAVLYHQRVEEISPNIRYCAYNIGDQNA-INDLMQMRLSAGGGGG 263
Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
+ KLE+++ + R++QAA ++E W G PI K R+ +L + E + AD+
Sbjct: 264 MMAEKLESLITQTRAKQAAVMSEVEWRGRTVPIKIDKARIFLLGLADNEAA--ITQADN- 320
Query: 303 PAEKKLVIFDKIFTAYHEA----RGCIRSDLASAGNAENVKD-----DLFGLDKAVSAVL 353
E K +++ + + R +R+D+ A +V + +L L ++ +
Sbjct: 321 -EETKEHLYESLLAECRDTIQAVREELRTDVKQRERATDVAESSKVSNLQYLHSYLTYIK 379
Query: 354 GQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRER 413
++RN+ + ++ KL + + D+ + +P++L+RLYD++LQ+ A+LS L G E
Sbjct: 380 LWTVVKRNESMAHSLQTKLKEPQTDENKRGPRPQDLIRLYDIILQSLAELSSL--QGLE- 436
Query: 414 KPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRM 473
E+ F +E LK+L ++A RCFY+A+SY L K +EA LY R + + + +
Sbjct: 437 --EDHTFQKELSLKTLVYKAYRCFYIAQSYVLVKKWSEALVLYERVLKYTKEVQSKAKSL 494
Query: 474 ANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFL 533
+N+ + + +++ L E + A I+ E +E L ++ + ++D F
Sbjct: 495 SNNLKDL-PDVQELIAEVNAEKYSLQAAAILDTEDIAE-LPSQQQIKDTTPLSDRLDNFR 552
Query: 534 LEKLDVYESAVGDSNVKGAA-RIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDR 592
L DSN+ + FPP FQ I P+ DLA N + P L++++++
Sbjct: 553 L-----------DSNLLSKQPNLVQFPPDFQPIPCKPLFFDLALNHVVLPPLDDKVEQKG 601
Query: 593 KGFIS 597
KG I+
Sbjct: 602 KGGIA 606
>RGD|1305376 [details] [associations]
symbol:Srp68 "signal recognition particle 68" species:10116
"Rattus norvegicus" [GO:0005047 "signal recognition particle
binding" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA;ISO] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0042493
"response to drug" evidence=ISO] InterPro:IPR026258
PIRSF:PIRSF038995 RGD:1305376 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 GO:GO:0005047 GO:GO:0030942 IPI:IPI00210212
Ensembl:ENSRNOT00000028875 ArrayExpress:D3ZVL3 Uniprot:D3ZVL3
Length = 587
Score = 621 (223.7 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 168/514 (32%), Positives = 271/514 (52%)
Query: 90 RFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLC-AIKADP 148
R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A LC + + D
Sbjct: 83 RYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELERLCESSRVDA 141
Query: 149 RTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEE 208
+T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E VL +RVEE
Sbjct: 142 KTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNRCKTIYEKLASAFTEEQAVLYNQRVEE 200
Query: 209 LEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHW 268
+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++QAA+++E W
Sbjct: 201 ISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 259
Query: 269 LGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSD 328
G P+ K R+ +L + E + V+A E K +F+ + + +A +R +
Sbjct: 260 RGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECRDALQAVREE 315
Query: 329 LAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVS-IVKGKLTKQRDDK 379
L + E+ K +L L ++ + I RN+ + + + L +Q +D
Sbjct: 316 LKPDQKQRDYTVDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRALLQQQPEDD 375
Query: 380 TGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYL 439
+ + +P++L+RLYD++LQN +L L G E E+ F +E LK+L F+A RCF++
Sbjct: 376 SKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRTFQKEIGLKTLVFKAYRCFFI 430
Query: 440 ARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEH 499
A+SY L K +EA LY R +A NS + + +++ L + RS C
Sbjct: 431 AQSYVLVKKWSEALVLYDRVLKYASEVSSHGGAFKNSLKDL-PDVQELITQVRSEKCSLQ 489
Query: 500 AKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFP 559
A I+ N S++ T S K + L+E+ + + + S V A + FP
Sbjct: 490 AAAIL-----DANESHQTDTAS----QVKDNTPLVERFETF--CLDPSLVTKQASLVHFP 538
Query: 560 PAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
P FQ I P+ DLA N + FP LE+++++ K
Sbjct: 539 PGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 572
Score = 88 (36.0 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGD 48
A E E S + + G S+ +LQ++K +Q QHGLRHGD
Sbjct: 32 AGGDENKENERPSAGSKANKEFGDSLSLEILQVIKESQQQHGLRHGD 78
>UNIPROTKB|F5H5Y3 [details] [associations]
symbol:SRP68 "Signal recognition particle 68 kDa protein"
species:9606 "Homo sapiens" [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR026258 PIRSF:PIRSF038995 GO:GO:0005737 EMBL:AC040980
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 GO:GO:0005047
GO:GO:0030942 HGNC:HGNC:11302 ChiTaRS:Srp68 IPI:IPI01015006
Ensembl:ENST00000355113 ArrayExpress:F5H5Y3 Bgee:F5H5Y3
Uniprot:F5H5Y3
Length = 526
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 176/532 (33%), Positives = 284/532 (53%)
Query: 73 RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAV 132
R K+T K +TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAV
Sbjct: 4 RHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAV 62
Query: 133 KWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191
K A LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L
Sbjct: 63 KHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLA 121
Query: 192 KYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAV 251
E VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA+
Sbjct: 122 SAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEAL 180
Query: 252 MAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIF 311
+ + R++QAA+++E W G P+ K R+ +L + E + V+A E K +F
Sbjct: 181 ITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLF 236
Query: 312 DKIFTAYHEARGCIRSDLAS---------AGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
+ + + +A +R +L G V + L L ++ + I+RN+
Sbjct: 237 ESMLSECRDAIQVVREELKPDQKQRDYILEGEPGKVSN-LQYLHSYLTYIKLSTAIKRNE 295
Query: 363 LLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFA 421
+ + + L +Q +D + + +P++L+RLYD++LQN +L L G E E+ F
Sbjct: 296 NMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQ 350
Query: 422 EECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMI 481
+E LK+L F+A RCF++A+SY L K +EA LY R +A D NS + +
Sbjct: 351 KEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDL- 409
Query: 482 EELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYE 541
+++ L + RS C A I+ N +++ T S + K +K L+E+ + +
Sbjct: 410 PDVQELITQVRSEKCSLQAAAIL-----DANDAHQTET---SSSQVKDNKPLVERFETF- 460
Query: 542 SAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 593
+ S V A + FPP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 461 -CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 511
>FB|FBgn0035947 [details] [associations]
symbol:Srp68 "Signal recognition particle protein 68"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] InterPro:IPR026258 PIRSF:PIRSF038995 EMBL:AE014296
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 GO:GO:0005047
GO:GO:0030942 eggNOG:NOG325632 GeneTree:ENSGT00390000011856
KO:K03107 CTD:6730 EMBL:AY058698 RefSeq:NP_648273.1 UniGene:Dm.899
DIP:DIP-22114N IntAct:Q9VSS2 MINT:MINT-825472 STRING:Q9VSS2
PaxDb:Q9VSS2 PRIDE:Q9VSS2 EnsemblMetazoa:FBtr0076517 GeneID:39028
KEGG:dme:Dmel_CG5064 UCSC:CG5064-RA FlyBase:FBgn0035947
InParanoid:Q9VSS2 OMA:KAAMEAF OrthoDB:EOG4WPZHW PhylomeDB:Q9VSS2
GenomeRNAi:39028 NextBio:811546 Bgee:Q9VSS2 GermOnline:CG5064
Uniprot:Q9VSS2
Length = 604
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 180/588 (30%), Positives = 297/588 (50%)
Query: 27 FSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKAITEST 85
F++ +L ++K AQ QHGLRHGD K+LK+ G + + R+ +T
Sbjct: 29 FTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQ 88
Query: 86 VT----EVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNL 141
+T + RF+H+ L AERAW++AM+ +Q R+R +L+ +LR+A +A L
Sbjct: 89 LTGKKADERFIHIPLICAERAWAYAMQLKQ-ESNTEPRKRFHLVNKLRRACFYALQLQEL 147
Query: 142 CAIKA-DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQV 200
C +A D RT LE EAY ++M G L FE Q W+TA ++ K A+ VYE LGK + Q
Sbjct: 148 CNTEAFDARTKLECEAYVAWMHGTLHFEL-QLWKTAGEHLKRAQVVYENLGKALPEDEQE 206
Query: 201 LCRERVEELEPSIRYCLHKI--GESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQ 258
L R +V E P++RYC + I G S K E+L++ +G L+ L+ ++++ +++
Sbjct: 207 LYRAKVNEFTPNLRYCAYNISGGASGGKIDEILEL-RAQG-VLE----NLDVLVSQTKTE 260
Query: 259 QAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFT-- 316
+ L W G + + K R+ +L AQEL+K L A + + K+ + ++I
Sbjct: 261 SSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSL----AKTTKQDAKIELIERILMDC 316
Query: 317 --AYHEARGCIRSD--LASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVK--- 369
A R I+ D L S + V + L +S + RT++RN LV K
Sbjct: 317 KDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLL-AYLSYIRHSRTLQRNLCLVEQAKLNF 375
Query: 370 --GKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
L Q++ GK +P++L RLY+++LQN ++ + +G E ++ + E E
Sbjct: 376 YDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQI--NGLE---DDATYQSEVENL 430
Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTL 487
++ F+A RC+Y+A + K EA ALY RA ++A ALK ++ + + EELK +
Sbjct: 431 AITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKG---KSSPEFQLQEELKKV 487
Query: 488 CKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDS 547
HA ++ ++ + E+ T + S +K K L E+L +Y+ S
Sbjct: 488 VSAIDGCKFSAHAYSVLEDDNSEES-----GTTTKS---QKTTKPLYERLSLYKE--DQS 537
Query: 548 NVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKD-RKG 594
A + P + I PI DLA +++ PSLE +++ +KG
Sbjct: 538 LHTKAPNVFKLTPDMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKG 585
>WB|WBGene00010097 [details] [associations]
symbol:F55C5.8 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR026258 PIRSF:PIRSF038995 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0040018
GO:GO:0040035 Gene3D:1.25.40.280 InterPro:IPR004328 GO:GO:0040002
EMBL:Z78198 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 GO:GO:0005047
GO:GO:0030942 PIR:T22716 RefSeq:NP_506083.1
ProteinModelPortal:Q20822 STRING:Q20822 PaxDb:Q20822
EnsemblMetazoa:F55C5.8.1 EnsemblMetazoa:F55C5.8.2 GeneID:179686
KEGG:cel:CELE_F55C5.8 UCSC:F55C5.8 CTD:179686 WormBase:F55C5.8
eggNOG:NOG325632 GeneTree:ENSGT00390000011856 HOGENOM:HOG000022449
InParanoid:Q20822 KO:K03107 OMA:LEFLKMN NextBio:906454
Uniprot:Q20822
Length = 622
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 168/603 (27%), Positives = 302/603 (50%)
Query: 10 MEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKF 69
M D + ++++ P ++++LQ++K AQ QHGLRHGD K+LKF
Sbjct: 1 MTNDVEMKSETEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKF 60
Query: 70 THG-------RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAM-EKRQLPDGPN-ARQ 120
T+ + K+ +K ++ +V V+FL+ ++ +ER ++ AM +K L D P +R+
Sbjct: 61 TNSHNCQKKRKAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRK 120
Query: 121 RIYLIGRLRKAVKWATLFSNLC--AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALK 178
+ +I LRKAV AT + + + D T LEA+AYA++M+G FE +NW+ A +
Sbjct: 121 KFSMINSLRKAVLHATNLEKIVQESERFDAPTKLEAQAYAAWMRGMCSFES-RNWQKASE 179
Query: 179 NFKSARAVYEELGKY-GDVENQVLCRERVEELEPSIRYCLHKIGESN--VKT-SELLQIG 234
+ K A+ VYE+L + + + + R E++P +R C I ES V T +EL+++
Sbjct: 180 SLKLAKTVYEKLAEATNNTTLSSIFKGRCREIQPQLRLCEFNIAESPGAVGTMTELMELR 239
Query: 235 EMEGPALDLFKSKLEAVMAEAR-SQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKD 293
G D S ++ +++E R S +A + W G + + + K + + + ++ E +
Sbjct: 240 MQMGEGGD---SSVDKLISEMRASATSAEVVTIEWGGAKSTVDDEKAKQVVQEWKQTEVE 296
Query: 294 LHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVL 353
L A P EK + +F+K +A I SD+ ++EN + KA L
Sbjct: 297 L---AQCQTPKEK-MALFEKATADTRDAIDRI-SDIIRRKSSENADTTVLQSIKAYLEFL 351
Query: 354 GQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRER 413
L +I+ + K+ K +KP++L+RLYD +++ +++++ + ++
Sbjct: 352 KMNGTASRYL--AIID-------NTKSEKKSKPQDLLRLYDSVIEIYKEVAEIPGADHDK 402
Query: 414 KPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRM 473
+ E+K +RA RCFY+A SYS K +EA AL+ R S ++A +++
Sbjct: 403 N-----LIQAFEVKVEYYRAFRCFYMASSYSALHKYSEAAALFDRTVSRVQDAEGKLKKL 457
Query: 474 ANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKF- 532
+S + E ++ E RS +E AK + V + + + T S K +DK
Sbjct: 458 KSSS-FITNETQSSLNELRSE--VESAK-VTVRAARLASAAGDVKTDS--ELAKIIDKRP 511
Query: 533 LLEKLDVYES-AVGDS-NVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKK 590
LLE ++ + V +S K + + PPAF + PI DLA + P++++R++K
Sbjct: 512 LLETVNEWRQWDVRNSLKDKKTIPVASLPPAFIPMPNKPIFFDLANFHLTMPNVDDRLEK 571
Query: 591 DRK 593
+K
Sbjct: 572 LQK 574
>DICTYBASE|DDB_G0285821 [details] [associations]
symbol:srp68 "signal recognition particle 68 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA;ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IEA;ISS] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR026258
PIRSF:PIRSF038995 dictyBase:DDB_G0285821 GenomeReviews:CM000153_GR
EMBL:AAFI02000080 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
GO:GO:0005047 GO:GO:0030942 eggNOG:NOG325632 KO:K03107 OMA:LEFLKMN
RefSeq:XP_001134536.1 STRING:Q1ZXE8 PRIDE:Q1ZXE8
EnsemblProtists:DDB0232383 GeneID:8625304 KEGG:ddi:DDB_G0285821
ProtClustDB:CLSZ2454931 Uniprot:Q1ZXE8
Length = 614
Score = 420 (152.9 bits), Expect = 4.5e-38, P = 4.5e-38
Identities = 150/607 (24%), Positives = 290/607 (47%)
Query: 26 KFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHGRGKYTRKAI---- 81
KF +++L +++Q+Q GLR D L+ +G+ Y K +
Sbjct: 17 KFHLDILNFSQTSQIQFGLRLQDYKKYRQYCSKRIQRLRSQLRKQYGKKNYVNKIVLNGG 76
Query: 82 -TESTVTEVRFLHLVLYTAERAWSHAME-KRQLPDGPNARQRIYLIGRLRKAVKWATLFS 139
TE + +VR+L + L ERAWS+AM+ K Q ++R ++ R KA + +T
Sbjct: 77 ETEKQINDVRYLQISLLKTERAWSYAMDLKAQFEKDNDSRIGFHMNRRFGKASRNSTQLY 136
Query: 140 NLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + AD T +EA AY+S+M +L + Q+++ AL+ ++ +YE+L + GD +
Sbjct: 137 ELCKLVADQYTIIEAHAYSSWMASSLSLTK-QDFKKALEEINISKTIYEKLSEQGDHSQK 195
Query: 200 VLCRERVEELEPSIRYCLHKI-GESNV--KTSE-LLQIGEMEGPALDLFKSKLEAVMAEA 255
L ++R+EE EP IR+CL+ + E N K S+ L I E L ++K ++ +
Sbjct: 196 ELYQKRIEETEPIIRFCLYNLKNEKNTSNKVSQNTLTIIEQSLEELKNQENKKKSSTSST 255
Query: 256 RSQQAASLTEFHWLGHRFPIS---NAKTRV--AILKAQE--LEKDLHVKAADSLPAEKKL 308
+ A + E W + + K ++ K E L K+++ +
Sbjct: 256 TTTTATTTIE--WKSKSIKVDEKLDEKLKIFNEFKKENENKLPKNINASIDTTSNISPIF 313
Query: 309 VIFDKIFTAYHEARGCIRSDLASAG--NAEN--VKDDLFGLDKAV--SAVLGQRT---IE 359
I+DK+ +++DL++ N +N VK ++ + + ++ + E
Sbjct: 314 NIYDKLVYNLINCETIVKNDLSTLVRVNLKNKSVKSEIEEQSTRILLAYIMYHKMKYLYE 373
Query: 360 RNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLS--DLVSSGRERKPEE 417
RN +L+++++ L ++ D++ + K + V DL+ +T + ++S R+ +
Sbjct: 374 RNSILITMMQRVLDGEKVDESA-IKKKVKKVTWNDLVRLSTHQVKVYTIMSESRDTDSNK 432
Query: 418 VKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSD 477
+ A + + + + ++ R +Y+A + + K +E A+ R ++ +N K + +
Sbjct: 433 -EIARDQDAQLILLKSIRLYYIAVCLAKSLKFSETMAVLDRVLTNIQNVRKTNTK---NQ 488
Query: 478 QMMIE--ELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISG----TGKKVDK 531
Q++ + EL++ K+ RS HA + + +++L N++S++SI G +GK D
Sbjct: 489 QILNDTNELESNIKKQRSQI---HANSFIQQLSENQDLKNQMSSLSIGGITTASGKSND- 544
Query: 532 FLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKD 591
L+ LD + D++ ++ PP Q + PI DLA+N + FPSL+ R K
Sbjct: 545 -LISGLDSF-----DTSFLTEKKLVQLPPQLQPVQAKPIFFDLAFNSVTFPSLDQRKKGS 598
Query: 592 RKGFISR 598
G S+
Sbjct: 599 STGTPSK 605
>ASPGD|ASPL0000011229 [details] [associations]
symbol:AN4043 species:162425 "Emericella nidulans"
[GO:0034399 "nuclear periphery" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0045047 "protein
targeting to ER" evidence=IEA] InterPro:IPR026258 PIRSF:PIRSF038995
EMBL:BN001302 EMBL:AACD01000065 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 GO:GO:0005047 GO:GO:0030942 eggNOG:NOG325632
KO:K03107 OMA:LEFLKMN OrthoDB:EOG4CC794 RefSeq:XP_661647.1
EnsemblFungi:CADANIAT00004639 GeneID:2873463 KEGG:ani:AN4043.2
HOGENOM:HOG000211745 Uniprot:Q5B5Y7
Length = 621
Score = 196 (74.1 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 88/310 (28%), Positives = 134/310 (43%)
Query: 294 LHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRS---DLASAGNAENVK--DDLFGLDKA 348
L+ +S A+ K +D + A +A ++ DLAS G + K L A
Sbjct: 289 LNAPEGNSASAKDKAAAYDSVIIASQDAVDATKTAIDDLASEGVDPSDKRMQSLQITRTA 348
Query: 349 VS-AVLGQRTIERNQLLVSIVKG--------------KLTKQRDDKTGK-VTKPEELVRL 392
V+ A++G R + RN++L G K T + D+ +GK +T+ E V L
Sbjct: 349 VNYALVGWR-VGRNRVLCGENDGITFEPSRRQSPKNKKATSEHDEPSGKKLTRLRERVVL 407
Query: 393 YDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEA 452
YD LQ+ + +L + F +E E K FRA R + RS++L GK A
Sbjct: 408 YDSTLQSIEFILELPGVAADSD-----FVQELEAKRTYFRALRSLTIGRSHALLGKSQNA 462
Query: 453 YALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASEN 512
AL+ +A S A A Q AN+ M I+ L S +EH +V +
Sbjct: 463 LALFSQALSLASKAAASIQSTANTG-MDIDGPPRLSIFPAQASSLEHELRALVTKYQGLV 521
Query: 513 LSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVL 572
IS S + L+E+L Y GDS + +PP + I P+ L
Sbjct: 522 TLESISAQEQSSNKSTPQRPLVERLHEY---AGDS--LDLNNLVPYPPEIRPIPVKPLFL 576
Query: 573 DLAYNFIDFP 582
D+A+N+ID+P
Sbjct: 577 DVAWNYIDYP 586
Score = 181 (68.8 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 86/329 (26%), Positives = 138/329 (41%)
Query: 38 AQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHGRG-KYTRKA-ITESTVTE-VRFLHL 94
A+ + L GD K L T +G KYT K I+ V E +H+
Sbjct: 9 ARREEVLVAGDYNAYRAHTTRKLHNIRKKLGQTTPKGRKYTSKPPISAQAVGENAANVHV 68
Query: 95 VLYTAERAWSHAMEKRQLPDG-PNAR-----QRIYLIGRLRKAVKWATLFSNLCAIKADP 148
+L +AERAW+ AM + P+A+ R ++I RL KA +A L K+
Sbjct: 69 LLLSAERAWAQAMHMKSTHSADPSAKGITGAARRHIISRLSKAAGYANQLVGLLEDKSGS 128
Query: 149 RTS----LEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRE 204
+ LEA AY S + G + E+ +NWE L+N+ +R +Y LG+ + R+
Sbjct: 129 GATDVDVLEARAYLSSLMGAIYLEK-RNWEQCLRNYSVSRVIYTALGQ---AAKRDAFRD 184
Query: 205 RVE-ELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAAS- 262
+ ++PS+RY +++ K L I PA ++++E + + AA
Sbjct: 185 LMSGNIDPSLRYAAYQMKLPRSKPIPSLAIEYF--PADSSIRAEVEKANPDCLKEDAAGT 242
Query: 263 ----------LTE-FHWLGHRFPISNA--KTRVAILKAQE--LEKDLHVKAADSLPAEKK 307
L E W I +A +A A+E L L+ +S A+ K
Sbjct: 243 RKTADGQVQQLPETITWRSRTVTIEDAMISQALAAASAEESRLAAWLNAPEGNSASAKDK 302
Query: 308 LVIFDKIFTAYHEARGCIRS---DLASAG 333
+D + A +A ++ DLAS G
Sbjct: 303 AAAYDSVIIASQDAVDATKTAIDDLASEG 331
>UNIPROTKB|G4NF58 [details] [associations]
symbol:MGG_04190 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR026258 PIRSF:PIRSF038995 EMBL:CM001236 GO:GO:0008312
GO:GO:0006614 GO:GO:0005786 GO:GO:0005047 GO:GO:0030942 KO:K03107
RefSeq:XP_003719633.1 EnsemblFungi:MGG_04190T0 GeneID:2677397
KEGG:mgr:MGG_04190 Uniprot:G4NF58
Length = 615
Score = 188 (71.2 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 86/343 (25%), Positives = 144/343 (41%)
Query: 70 THGRGKY-TRKAITESTVTEVR-FLHLVLYTAERAWSHAMEKRQLPDGPN----ARQRIY 123
T R KY + +T V E + +LHL + TAERAW+HAM + N R +
Sbjct: 42 TKSRAKYHAQPQLTPEAVAENKEYLHLQIMTAERAWAHAMTMKSAHAADNKGITGSTRSH 101
Query: 124 LIGRLRKAVKWATLFSNLCAIK---ADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
++ RL KA + A + + + A+ LEA AYA+ ++G E+ +WE L+++
Sbjct: 102 IVSRLHKAARTAEQLAEVLGGEGSGANQTDVLEARAYAALLRGAEQLEK-HSWEECLRSY 160
Query: 181 KSARAVYEELGKYG--DVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG 238
AR +Y L D +L E ++PSIRY +++ T +
Sbjct: 161 SIARIIYSALASESKKDTFKDLLS----ETIDPSIRYAAYQLKSPRSLTIPTIARKAFPK 216
Query: 239 PALDLFKSKLEAVMAEARSQQ-------AASLTEFHWLGHRFPISNAKTRVAILKAQELE 291
DL S +++V EA A S T + I +A A L Q+ +
Sbjct: 217 DDEDLI-SIIQSVNREALEDTEGDAKMGATSPTTITFRSREVRIEDAAIATAWLALQDAK 275
Query: 292 KDLHVK-AADSLPAEKKLVIFDKIFTAYHEARGCIRS---DLASAG--NAENVKDDLFGL 345
L K +A SL ++ +D + A ++ + +L + G ++ L
Sbjct: 276 ATLAEKLSAGSLSPKEMAAAYDDVLAASQDSVDATKQAIDELKADGVTQGDSRMQSLAVT 335
Query: 346 DKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEE 388
AV+ + I RN++L G + Q+ + K KP +
Sbjct: 336 RTAVNYEMISWRIGRNRVLSGERDGAVV-QKHTHSNKRRKPND 377
Score = 138 (53.6 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 84/360 (23%), Positives = 148/360 (41%)
Query: 245 KSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVK-AADSLP 303
+ LE +A+ A S T + I +A A L Q+ + L K +A SL
Sbjct: 230 REALEDTEGDAK-MGATSPTTITFRSREVRIEDAAIATAWLALQDAKATLAEKLSAGSLS 288
Query: 304 AEKKLVIFDKIFTAYHEARGCIRS---DLASAG--NAENVKDDLFGLDKAVSAVLGQRTI 358
++ +D + A ++ + +L + G ++ L AV+ + I
Sbjct: 289 PKEMAAAYDDVLAASQDSVDATKQAIDELKADGVTQGDSRMQSLAVTRTAVNYEMISWRI 348
Query: 359 ERNQLLVSIVKGKLT-------KQRDDKTGKVT--KPEELVRLYDLLLQNTADLSDLVSS 409
RN++L G + K+R G+ KPE + R L + T L D +
Sbjct: 349 GRNRVLSGERDGAVVQKHTHSNKRRKPNDGEAERPKPEPVGRQLARLKEKTV-LYDGIMQ 407
Query: 410 GRERKPEEVKFAEECELK------SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463
E E A + EL S F A +C + RS+++ G + AL A A
Sbjct: 408 SLESIKELPGVAADDELSARLNATSSYFEALKCLAIGRSHAIVGNLVNSLALIKHALEQA 467
Query: 464 ENALKDFQRMANS-DQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSI 522
+ A+ + + S + + + ++ +S E +G + +A ++ N I
Sbjct: 468 QVAVSTLGKPSGSANAPSLRNIDVSPQDVQSLG--ELLEGEVQRYRALVDIDNMRKEGKI 525
Query: 523 SGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFP 582
+ T ++ L +KL Y + D +++ I A+PPA I PI LDLA+N+I++P
Sbjct: 526 TATDDRLQP-LADKLSRYPAR--DVDLQN---IVAYPPALGVIPMKPIFLDLAFNYIEYP 579
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 601 585 0.00082 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 613 (65 KB)
Total size of DFA: 301 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.40u 0.10s 53.50t Elapsed: 00:00:03
Total cpu time: 53.41u 0.10s 53.51t Elapsed: 00:00:03
Start: Thu May 9 16:31:16 2013 End: Thu May 9 16:31:19 2013