Query 007509
Match_columns 601
No_of_seqs 125 out of 231
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2460 Signal recognition par 100.0 2E-114 3E-119 907.1 45.4 552 26-601 17-593 (593)
2 cd09247 BRO1_Alix_like_2 Prote 91.6 3.1 6.7E-05 44.6 13.5 75 387-468 213-288 (346)
3 cd09242 BRO1_ScBro1_like Prote 89.8 7.8 0.00017 41.6 14.5 79 387-470 203-281 (348)
4 cd09241 BRO1_ScRim20-like Prot 89.7 6.2 0.00013 42.5 13.8 72 388-469 202-273 (355)
5 cd09239 BRO1_HD-PTP_like Prote 89.0 6.9 0.00015 42.3 13.5 83 387-471 208-290 (361)
6 cd09034 BRO1_Alix_like Protein 89.0 4.2 9.1E-05 43.3 11.8 77 387-470 210-288 (345)
7 PF03097 BRO1: BRO1-like domai 88.2 2.3 4.9E-05 45.9 9.2 98 387-492 200-297 (377)
8 PF13176 TPR_7: Tetratricopept 87.5 1.3 2.9E-05 30.8 4.6 27 437-463 3-29 (36)
9 PF07719 TPR_2: Tetratricopept 86.0 1.5 3.3E-05 29.3 4.2 27 436-462 4-30 (34)
10 PF13374 TPR_10: Tetratricopep 84.6 2 4.2E-05 30.0 4.4 29 438-466 7-35 (42)
11 cd09240 BRO1_Alix Protein-inte 82.0 19 0.00041 38.6 12.5 76 387-469 216-291 (346)
12 PF00515 TPR_1: Tetratricopept 81.3 3.8 8.3E-05 27.5 4.6 27 436-462 4-30 (34)
13 cd09246 BRO1_Alix_like_1 Prote 78.8 24 0.00052 38.0 12.0 77 387-470 208-284 (353)
14 PHA02726 hypothetical protein; 74.9 1.5 3.2E-05 36.9 1.1 30 568-601 65-94 (94)
15 PF13424 TPR_12: Tetratricopep 74.0 28 0.00061 27.9 8.6 29 436-464 48-77 (78)
16 PF13181 TPR_8: Tetratricopept 73.3 7.5 0.00016 25.9 4.3 28 436-463 4-31 (34)
17 PF13174 TPR_6: Tetratricopept 72.6 5.4 0.00012 26.2 3.4 26 437-462 4-29 (33)
18 cd09243 BRO1_Brox_like Protein 71.6 22 0.00047 38.4 9.3 75 387-470 211-285 (353)
19 PF00515 TPR_1: Tetratricopept 65.5 16 0.00035 24.3 4.6 30 156-186 1-30 (34)
20 PF13428 TPR_14: Tetratricopep 64.5 12 0.00025 27.1 3.9 26 437-462 5-30 (44)
21 PF07719 TPR_2: Tetratricopept 63.7 18 0.0004 23.8 4.6 29 157-186 2-30 (34)
22 PF13424 TPR_12: Tetratricopep 63.5 58 0.0013 25.9 8.4 63 123-189 16-78 (78)
23 KOG2376 Signal recognition par 62.8 1.8E+02 0.0038 33.5 14.2 33 436-468 178-210 (652)
24 cd09245 BRO1_UmRIM23-like Prot 61.6 54 0.0012 36.2 10.1 52 416-467 279-330 (413)
25 cd09244 BRO1_Rhophilin Protein 60.1 1.6E+02 0.0034 31.8 13.1 75 388-469 206-280 (350)
26 PF13432 TPR_16: Tetratricopep 54.9 19 0.00042 27.7 4.0 26 437-462 35-60 (65)
27 PF04212 MIT: MIT (microtubule 53.9 41 0.00089 26.8 5.8 38 432-469 4-41 (69)
28 cd02682 MIT_AAA_Arch MIT: doma 51.5 57 0.0012 27.1 6.3 38 434-471 7-44 (75)
29 PF07721 TPR_4: Tetratricopept 51.2 19 0.00041 23.0 2.7 22 437-458 5-26 (26)
30 cd02681 MIT_calpain7_1 MIT: do 48.8 89 0.0019 25.9 7.1 35 433-467 6-40 (76)
31 cd02683 MIT_1 MIT: domain cont 44.8 80 0.0017 26.2 6.3 31 439-469 12-42 (77)
32 KOG2220 Predicted signal trans 44.8 1.8E+02 0.004 34.4 11.4 77 387-471 205-281 (714)
33 PF13374 TPR_10: Tetratricopep 43.0 63 0.0014 22.0 4.7 33 158-191 4-36 (42)
34 cd02678 MIT_VPS4 MIT: domain c 42.5 1.3E+02 0.0027 24.6 7.1 33 436-468 9-41 (75)
35 PF12895 Apc3: Anaphase-promot 41.9 37 0.00081 27.7 3.9 21 439-459 64-84 (84)
36 smart00028 TPR Tetratricopepti 41.2 41 0.00089 20.2 3.3 25 437-461 5-29 (34)
37 PF10516 SHNi-TPR: SHNi-TPR; 40.3 58 0.0013 23.3 4.1 33 158-191 3-35 (38)
38 PF11817 Foie-gras_1: Foie gra 40.1 1E+02 0.0023 31.2 7.6 88 125-223 144-234 (247)
39 PF12063 DUF3543: Domain of un 39.8 4E+02 0.0087 27.1 11.7 126 93-219 73-236 (238)
40 PF13414 TPR_11: TPR repeat; P 39.7 48 0.001 25.7 4.1 30 156-186 3-32 (69)
41 PF14853 Fis1_TPR_C: Fis1 C-te 39.7 55 0.0012 25.2 4.2 26 436-461 4-29 (53)
42 cd02679 MIT_spastin MIT: domai 38.3 1.5E+02 0.0033 24.8 6.9 39 430-468 5-43 (79)
43 PF13174 TPR_6: Tetratricopept 37.6 59 0.0013 21.0 3.7 27 157-184 1-27 (33)
44 KOG1840 Kinesin light chain [C 37.2 6.5E+02 0.014 28.6 13.9 124 308-465 254-399 (508)
45 PF13181 TPR_8: Tetratricopept 36.6 78 0.0017 20.7 4.2 27 159-186 4-30 (34)
46 PF15118 DUF4560: Domain of un 36.5 14 0.00031 28.8 0.4 14 570-583 34-48 (65)
47 PF13414 TPR_11: TPR repeat; P 34.3 64 0.0014 24.9 4.0 27 437-463 7-33 (69)
48 PF13371 TPR_9: Tetratricopept 32.6 62 0.0013 25.3 3.7 26 438-463 34-59 (73)
49 smart00745 MIT Microtubule Int 32.3 1.4E+02 0.003 24.2 5.8 37 432-468 7-43 (77)
50 PF08097 Toxin_26: Conotoxin T 31.2 14 0.00031 18.8 -0.2 7 211-217 4-10 (11)
51 PF04652 DUF605: Vta1 like; I 31.0 2.9E+02 0.0063 29.7 9.7 65 146-220 70-135 (380)
52 PF08969 USP8_dimer: USP8 dime 30.3 1.6E+02 0.0034 26.1 6.3 40 429-469 33-73 (115)
53 PF13432 TPR_16: Tetratricopep 29.0 59 0.0013 24.9 3.0 25 437-461 1-25 (65)
54 PF12688 TPR_5: Tetratrico pep 27.7 74 0.0016 28.7 3.7 25 437-461 5-29 (120)
55 cd02682 MIT_AAA_Arch MIT: doma 26.2 2.9E+02 0.0063 22.9 6.6 49 160-208 9-58 (75)
56 PF04212 MIT: MIT (microtubule 26.1 2.8E+02 0.006 21.9 6.5 48 160-207 8-56 (69)
57 PF00633 HHH: Helix-hairpin-he 25.2 35 0.00076 23.0 0.8 14 398-411 8-21 (30)
58 cd02684 MIT_2 MIT: domain cont 24.8 3.9E+02 0.0085 21.9 7.8 35 434-468 7-41 (75)
59 PF12895 Apc3: Anaphase-promot 24.2 1E+02 0.0022 25.0 3.7 21 161-182 63-83 (84)
60 PF14559 TPR_19: Tetratricopep 22.2 65 0.0014 24.8 2.0 25 437-461 29-53 (68)
61 PF07720 TPR_3: Tetratricopept 21.0 1.3E+02 0.0029 21.1 3.1 21 437-457 5-25 (36)
62 cd00189 TPR Tetratricopeptide 20.7 1.3E+02 0.0029 22.7 3.7 27 436-462 3-29 (100)
63 cd02656 MIT MIT: domain contai 20.5 4.5E+02 0.0098 21.1 7.7 31 438-468 11-41 (75)
No 1
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-114 Score=907.13 Aligned_cols=552 Identities=32% Similarity=0.498 Sum_probs=474.9
Q ss_pred ccchhHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHhhcCCccC-CCCcccccCCccccc--chhhHHHHHHHHHHH
Q 007509 26 KFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITESTVT--EVRFLHLVLYTAERA 102 (601)
Q Consensus 26 ~~sl~vl~~i~~~q~qhGLrh~DY~RYr~ycsrRL~rLRk~L~~t~g-~~Ky~~k~it~e~~~--d~r~l~llLl~AERa 102 (601)
--++.+|++++++|+|||||||||+|||+||++|++|+||.++|+.| .+||..+.||-...+ |.+||.+|++++||+
T Consensus 17 ~~t~~iL~~~kd~qqqHgLrhGd~qryR~yC~~~l~r~rKal~f~~gn~~k~~s~~v~~~~~~~~~~q~l~~~~~e~era 96 (593)
T KOG2460|consen 17 CRTLEILQTIKDAQQQHGLRHGDFQRYRGYCSRRLRRLRKALKFKNGNYGKFKSKDVTNKLKTLHDIQFLILPLAEAERA 96 (593)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhHhhhhhhhhhhhhhhhHHHH
Confidence 34899999999999999999999999999999999999999999888 788988888766444 999999999999999
Q ss_pred HHHHHH-hccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 007509 103 WSHAME-KRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAI--KADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179 (601)
Q Consensus 103 WAyAm~-lk~~~~~~~~r~R~h~~~RLkKA~~~A~~L~~l~~~--~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~ 179 (601)
|||||+ .+| +.+..+|+|+|+++||||||+||.+|+++|++ +.|++|+|||+||++||+|.+.||++ +|+.|++.
T Consensus 97 ~Aeam~~~~Q-e~n~e~rkrfhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r-~Wk~a~ea 174 (593)
T KOG2460|consen 97 YAEAMQLAKQ-EGNTESRKRFHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERR-KWKDAAEA 174 (593)
T ss_pred HHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHH-hHHhHHHH
Confidence 999999 777 67788999999999999999999999999986 47999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhhhhHHHHhhccCCCCC--CchHHHhhhhhcCCchhHHHHHHHHHHH-HH
Q 007509 180 FKSARAVYEELGKYGD-VENQVLCRERVEELEPSIRYCLHKIGESNV--KTSELLQIGEMEGPALDLFKSKLEAVMA-EA 255 (601)
Q Consensus 180 ~~~ar~iy~~L~~~~~-~~~~~l~~~~ve~idp~lRycay~l~~~~~--~~~dl~~~~~~~~~~~~~l~~kl~~~~~-~~ 255 (601)
|+.|+.+|+.|+.+.+ ++++.+|+.++++|+|+|||||||++.+.. ...++|+++.+.+.+.-.+...++..+. .+
T Consensus 175 ~~~~klvye~L~~a~~~e~~~~v~~~~vneiqpnLRycA~Ni~~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t 254 (593)
T KOG2460|consen 175 FNNAKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPESNGFIDELMQSREQKDEELVKLLESVDFLISIQT 254 (593)
T ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHhcChhHHHHhhhccCccccchHHHHHHhhccCCchhhhhhhccchhhhcch
Confidence 9999999999999987 678999999999999999999999976654 4688888875543333335555666676 44
Q ss_pred HHHhhccccEEEEcccccccCCHHHHHHHHHHHHHHHHHhHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007509 256 RSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNA 335 (601)
Q Consensus 256 ~~~~~~~~~~I~Wr~~~~~i~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~yd~~l~~~~dA~~~~k~~i~~~~~~ 335 (601)
.+++.+.+++|+|||++|+|.+++|+++|..+++++..|.+++ +.+.+++.++++++.|.||++.+++.+.-....
T Consensus 255 ~tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~l~q~~----t~~~K~~llEkala~~edaI~~v~D~~~~d~~~ 330 (593)
T KOG2460|consen 255 STESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPALAQIT----TYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQ 330 (593)
T ss_pred hhhhhcceeEEEecCcccccccHHHHHHHHHHHhhcHHhccCC----CHhHHHHHHHHHHHHHHHHHHHHhhhcccchHh
Confidence 5555678999999999999999999999999999988776643 468999999999999999999999999643321
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccccccCCCCCChhhHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 007509 336 ENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKP 415 (601)
Q Consensus 336 ~~~~~el~~l~~yi~~~~l~~tIeRn~~Li~~l~~~~~~~~~~~~~k~~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~ 415 (601)
.+..-..|.+++|+.|+++.+||.||..++..++..|.......++|+ +|+|+.||||+|+||+.||+||||+++
T Consensus 331 ~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~-rpqdl~RLYd~iiknl~e~~elPG~~~---- 405 (593)
T KOG2460|consen 331 RNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKL-RPQDLERLYDSIIKNLSEIMELPGLES---- 405 (593)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCccccccc-CHHHHHHHHHHHHHHHHHHHhCCCccc----
Confidence 111124667899999999999999999999999999887655556666 999999999999999999999999764
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHhhccc
Q 007509 416 EEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNS 495 (601)
Q Consensus 416 ~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~~~~~~l~~L~~~i~~~~ 495 (601)
|.+|+.+++++..||+|+||||||.+|+..+||+||+|||+||..+++++.+.+....+.+.+ ..+.+++.++++.+
T Consensus 406 -D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~--~~~~eli~el~k~k 482 (593)
T KOG2460|consen 406 -DKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLP--LLLLELISELQKRK 482 (593)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccc--hHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999887766544333 55667888889889
Q ss_pred hHHHHhhhhhHhhhhhhhccccccccccCCCcccccchhhhhhhcccccCCCCCCCCCccccCCCCcccccCCchhhhhh
Q 007509 496 CIEHAKGIMVEEKASENLSNKISTVSISGTGKKVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLA 575 (601)
Q Consensus 496 ~~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lie~ld~~~~~~~~~~~~~~~nl~~~pP~~~pvp~KPlfFDlA 575 (601)
+.++|.+++.+.-... + ..++++.+.+.||+|+||.|..+ .+.++.++|++++||.|+||||||+|||||
T Consensus 483 ~s~~a~~il~a~~a~~----t----nt~~sq~k~~~pLvE~lds~k~~--~~l~~k~~n~~~l~P~~~PIP~KPlFFDLA 552 (593)
T KOG2460|consen 483 ESLGAAVILLAEYAKR----T----NTGGSQGKDNLPLVETLDSYKLD--LSLDTKLPNLFPLPPDFLPIPCKPLFFDLA 552 (593)
T ss_pred Hhhhhhhhhhhccchh----c----CCccccCCCcccHHHHHHHhccc--chhhhccCccccCCcccccCCCcchHHHHH
Confidence 9999999987644311 1 11134556789999999999942 235778999999999999999999999999
Q ss_pred ccccCCCCchhhhhhc---------------cccccccccC
Q 007509 576 YNFIDFPSLENRMKKD---------------RKGFISRLWR 601 (601)
Q Consensus 576 ~Nyi~yP~l~~~~k~~---------------~~g~~~~~~~ 601 (601)
+|||+||.++++.++. ..||+++|||
T Consensus 553 ~~yl~~p~~edkleq~~k~~~~t~~~G~~k~~~Gf~~sf~g 593 (593)
T KOG2460|consen 553 FNYLTYPKLEDKLEQVKKSGTETTPTGEPKKKRGFLSSFGG 593 (593)
T ss_pred HHhhcCCcccchhhhcCCCccccCCccccccchhhhhccCC
Confidence 9999999999988331 1388888886
No 2
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=91.59 E-value=3.1 Score=44.63 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHhc-ccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSD-LVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAEN 465 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~e-Lpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (601)
.+...+|+.....+..... +++ -+.++..-+..+..+|+|.=|+++|......+|+-||++.+..|...+..
T Consensus 213 ~~~~~~y~~A~~~l~~~~~~~~~-------i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 213 YGATQFLEEAKNVLRSLATDLKD-------LDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHHHHccCcchhh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3466677766666654321 222 24589999999999999999999999999999999999999999998876
Q ss_pred HHH
Q 007509 466 ALK 468 (601)
Q Consensus 466 a~~ 468 (601)
+..
T Consensus 286 ~~~ 288 (346)
T cd09247 286 KLP 288 (346)
T ss_pred hhc
Confidence 654
No 3
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=89.76 E-value=7.8 Score=41.61 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
.++..+|....+.+..... ++.. --+.....-+..+..+|+|+=+||.|......+||-||+|-+..|...+..+
T Consensus 203 ~~~~~~Y~~a~~~l~~~~~-~~~~----~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 203 SATANLYESCVEFLKEIQE-KGIS----YGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHHHhcccc-cccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 3566788877777665321 1110 0144777888899999999999999999999999999999999999999888
Q ss_pred HHHH
Q 007509 467 LKDF 470 (601)
Q Consensus 467 ~~~~ 470 (601)
.+..
T Consensus 278 ~~~~ 281 (348)
T cd09242 278 NPQK 281 (348)
T ss_pred HHHH
Confidence 7643
No 4
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=89.75 E-value=6.2 Score=42.47 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 388 eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
.+..+|+...+.+.. -+.+ +..+..-+..+..+|+|.=+|+.|......+||-|++|-+..|...+.++.
T Consensus 202 qv~~~Y~~a~~~l~~---~~~i-------~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~ 271 (355)
T cd09241 202 QVSDYYQEALKYANK---SDLI-------RSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAACKEAL 271 (355)
T ss_pred HHHHHHHHHHHHHhc---CCcc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466777777776651 1221 347888899999999999999999999999999999999999999999887
Q ss_pred HH
Q 007509 468 KD 469 (601)
Q Consensus 468 ~~ 469 (601)
+.
T Consensus 272 ~~ 273 (355)
T cd09241 272 KE 273 (355)
T ss_pred HH
Confidence 64
No 5
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=89.04 E-value=6.9 Score=42.29 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
..+..+|+.....+.+....+++.. ..-+.+...-+..+..||+|.=+|+.|......+||-|++|-+..|...+.+|
T Consensus 208 ~q~~~~Y~~a~~~l~~~~~~~~~~~--~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a 285 (361)
T cd09239 208 AQVVEYYKEALRALENWESNSKIIL--GKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEA 285 (361)
T ss_pred HHHHHHHHHHHHHHhcccccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888776422111001 01244788899999999999999999999999999999999999999999888
Q ss_pred HHHHh
Q 007509 467 LKDFQ 471 (601)
Q Consensus 467 ~~~~~ 471 (601)
.+...
T Consensus 286 ~~~~~ 290 (361)
T cd09239 286 IKNAK 290 (361)
T ss_pred HHHHh
Confidence 77543
No 6
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=89.01 E-value=4.2 Score=43.32 Aligned_cols=77 Identities=18% Similarity=0.075 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHhcc--cCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDL--VSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eL--pgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
.+...+|+...+.+.+.... .+ -+..+..-+..+..+|+|.=+|++|..+...+++.||++.+..|...++
T Consensus 210 ~~~~~~y~~A~~~l~~~~~~~~~~-------~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~ 282 (345)
T cd09034 210 CEAAKYYEEALKCLSGVDLETIKN-------IPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLK 282 (345)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 45777888888877764432 22 1448888899999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 007509 465 NALKDF 470 (601)
Q Consensus 465 ~a~~~~ 470 (601)
.+....
T Consensus 283 ~~~~~~ 288 (345)
T cd09034 283 ESERLC 288 (345)
T ss_pred HHHHHH
Confidence 887643
No 7
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=88.21 E-value=2.3 Score=45.95 Aligned_cols=98 Identities=21% Similarity=0.154 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
.++..+|+.....+.....-..+ +..+..-+..+..||+|+-+|+.|..+...++|.||++.+..|...+.++
T Consensus 200 ~~~~~~Y~~a~~~l~~~~~~~~~-------~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 200 AQASELYDEAHEALQSSPLSESI-------PKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHCS-------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 34556666666665554321111 33788889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhh
Q 007509 467 LKDFQRMANSDQMMIEELKTLCKECR 492 (601)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~L~~~i~ 492 (601)
.+....+ .........+..+...|+
T Consensus 273 ~~~~~~~-~~~~~~~~~~~~l~~~i~ 297 (377)
T PF03097_consen 273 SKLAKKC-SKSSSLQDDLKSLLDQIQ 297 (377)
T ss_dssp HHHCCCH-SCCSTTTHHHHHHHHHHH
T ss_pred Hhhhhcc-cchHHHHHHHHHHHHHHH
Confidence 8754322 112223344444555544
No 8
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.46 E-value=1.3 Score=30.77 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
..||..|...|+|.+|+.+|.+++...
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 459999999999999999999988544
No 9
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.95 E-value=1.5 Score=29.28 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
++.+|.+|...|+|.+|+..|.++...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999864
No 10
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.57 E-value=2 Score=30.00 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=23.5
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
.||..|...|+|.||+.++.++.......
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 49999999999999999999999887655
No 11
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=81.96 E-value=19 Score=38.61 Aligned_cols=76 Identities=13% Similarity=-0.032 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
..+..+|+...+.+..-. +-+ --+.+...-+..+..||+|.=.|+.|..+...+||-|++|-+..|...++++
T Consensus 216 ~qv~~~Y~~a~~~l~~~~-~~~------~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a 288 (346)
T cd09240 216 AQAADYYGDAFKQCQRED-VRS------LLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALELIKTA 288 (346)
T ss_pred HHHHHHHHHHHHHHhcch-hcc------ccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 346677777777766321 101 1144778889999999999999999999999999999999999999988887
Q ss_pred HHH
Q 007509 467 LKD 469 (601)
Q Consensus 467 ~~~ 469 (601)
...
T Consensus 289 ~~~ 291 (346)
T cd09240 289 QSR 291 (346)
T ss_pred HHH
Confidence 653
No 12
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.26 E-value=3.8 Score=27.51 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.+.+|.+|...|+|.+|+.-|.+|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 345999999999999999999999875
No 13
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=78.81 E-value=24 Score=37.99 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
..+..+|......+.. ..+.+. -+.....-+..+..+|+|.=.|+.|......+||-|++|-+..|...+.++
T Consensus 208 ~qv~~~Y~~a~~~l~~-~~~~~~------~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 280 (353)
T cd09246 208 KQARSYYEEALEALDS-PPLKGH------FDKSWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDALAEA 280 (353)
T ss_pred HHHHHHHHHHHHHHhc-cccccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHH
Confidence 3566788887777663 112221 144777889999999999999999999999999999999999999998888
Q ss_pred HHHH
Q 007509 467 LKDF 470 (601)
Q Consensus 467 ~~~~ 470 (601)
.+..
T Consensus 281 ~k~~ 284 (353)
T cd09246 281 RKQA 284 (353)
T ss_pred HHHh
Confidence 7653
No 14
>PHA02726 hypothetical protein; Provisional
Probab=74.90 E-value=1.5 Score=36.90 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=17.5
Q ss_pred CchhhhhhccccCCCCchhhhhhccccccccccC
Q 007509 568 NPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR 601 (601)
Q Consensus 568 KPlfFDlA~Nyi~yP~l~~~~k~~~~g~~~~~~~ 601 (601)
||=-+| =.+|++.-..|+ ++++|+|+||||
T Consensus 65 ~~k~~~-Fls~~NPF~KEE---~kk~G~fs~~fg 94 (94)
T PHA02726 65 QPKTSG-FLSYLNPFRKEE---PPKKGFFSGLFG 94 (94)
T ss_pred ccchHh-HHHhcCcccccc---cccccccccccC
Confidence 334444 345554433333 456799999998
No 15
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=73.97 E-value=28 Score=27.85 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=25.5
Q ss_pred HHH-HHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 436 CFY-LARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 436 c~~-lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
|++ ||.+|...|++.+|+..|++|.+..+
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 444 99999999999999999999988654
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.34 E-value=7.5 Score=25.91 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
++.+|.+|...|.+.+|+..|.++.+.-
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4569999999999999999999998753
No 17
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.64 E-value=5.4 Score=26.22 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
|.+|.+|...|++.+|...|++....
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45899999999999999999988653
No 18
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=71.55 E-value=22 Score=38.38 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
.+...+|+...+.+..+.+ .+ +.....-+..+..+|+|.=.||.|......+|+-||++.++.|.+.+..+
T Consensus 211 ~q~a~~Y~~A~~~l~~~~~--~i-------~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 211 YETAKLFQKADDSLSSLDP--EY-------SGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHHHHHcCCc--cc-------cHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 4677888888887765322 11 33678889999999999999999999999999999999999999998877
Q ss_pred HHHH
Q 007509 467 LKDF 470 (601)
Q Consensus 467 ~~~~ 470 (601)
....
T Consensus 282 ~~~~ 285 (353)
T cd09243 282 EALC 285 (353)
T ss_pred HHHH
Confidence 6543
No 19
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.50 E-value=16 Score=24.32 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 007509 156 AYASYMKGNLLFEQDQNWETALKNFKSARAV 186 (601)
Q Consensus 156 aY~a~i~G~~~~E~~~~W~~al~~~~~ar~i 186 (601)
|..-+..|..++..+ +|++|+..|..|-.+
T Consensus 1 a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG-DYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 345678899999998 999999999988654
No 20
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=64.52 E-value=12 Score=27.07 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|..|...|++.+|..+|.++.+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999774
No 21
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.68 E-value=18 Score=23.77 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 007509 157 YASYMKGNLLFEQDQNWETALKNFKSARAV 186 (601)
Q Consensus 157 Y~a~i~G~~~~E~~~~W~~al~~~~~ar~i 186 (601)
...+..|..++..+ +|++|++.|..|-.+
T Consensus 2 ~~~~~lg~~~~~~~-~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG-NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 45677899999998 999999999888654
No 22
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=63.52 E-value=58 Score=25.93 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 007509 123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEE 189 (601)
Q Consensus 123 h~~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~ 189 (601)
....+..+|..+-++-+.+++...+.... .+-...-.|.+....+ ++++|++.|..|..|+++
T Consensus 16 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 16 RELGRYDEALDYYEKALDIEEQLGDDHPD---TANTLNNLGECYYRLG-DYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTTTHHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhcC
Confidence 34577889999999999996555443321 2445566788888887 999999999999998864
No 23
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.79 E-value=1.8e+02 Score=33.47 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
||-.||++...|||.+|+-|+..|+..+.+...
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 677999999999999999999999988876654
No 24
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=61.57 E-value=54 Score=36.17 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 416 EEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 416 ~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
-|.++..-+..+..+|+|.=|+++|...-..+|+-||++-+..|...+..+.
T Consensus 279 i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~~ 330 (413)
T cd09245 279 VSEELLRYLSDLRRVARALACKFLGIDAGENGKVGEAIGWLRAAKKELEDLK 330 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999999999999776544
No 25
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=60.09 E-value=1.6e+02 Score=31.79 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 388 eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
.+..+|....+.+.. -.+.+. -+.+...-+..+..||+|+=.|+.|......+++.++.|-+..|....++|.
T Consensus 206 qv~~~Y~~a~~~~~~-~~~~~~------i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a~ 278 (350)
T cd09244 206 QVSDCYSEVHKLMNQ-EPVKDY------IPYSWISLVEVKSEHYKALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEAL 278 (350)
T ss_pred HHHHHHHHHHHHHhc-cccccc------cCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777666542 012221 1447888899999999999999999999999999999999999999888777
Q ss_pred HH
Q 007509 468 KD 469 (601)
Q Consensus 468 ~~ 469 (601)
..
T Consensus 279 ~~ 280 (350)
T cd09244 279 RL 280 (350)
T ss_pred HH
Confidence 64
No 26
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=54.88 E-value=19 Score=27.71 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+.+|.++...
T Consensus 35 ~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 35 YLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999753
No 27
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.92 E-value=41 Score=26.83 Aligned_cols=38 Identities=32% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 432 ~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
+|+.+...|.-+-..|+|.+|+.+|..|.+.+..+...
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 46667778888889999999999999999999888764
No 28
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.47 E-value=57 Score=27.05 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 007509 434 ERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQ 471 (601)
Q Consensus 434 ~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~~~ 471 (601)
..+..-|--+-..|++.||+..|..+.+.+.++....+
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~p 44 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYP 44 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444566677789999999999999999998876533
No 29
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=51.18 E-value=19 Score=23.03 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCChHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCR 458 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~r 458 (601)
+.+|..|...|.+.||.+++.+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHhC
Confidence 4599999999999999998863
No 30
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.83 E-value=89 Score=25.93 Aligned_cols=35 Identities=26% Similarity=0.099 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 433 AERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
|......|--.-..|+|.||+.+|..|.+.+..+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAE 40 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 34444566677788999999999999999997764
No 31
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.83 E-value=80 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
-|--.-..|+|.||+.+|..+.+.+..+...
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667899999999999999999988753
No 32
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=44.76 E-value=1.8e+02 Score=34.44 Aligned_cols=77 Identities=16% Similarity=0.038 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
..++-+|+..+..+..... ++ -+.++..-+-++..+|.+..+|++++.-....++.|+.++++.+..++.+|
T Consensus 205 ~q~~~fy~~Al~~~~~~~~-~~-------~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e~~~~ge~i~~l~~~~~~l~~A 276 (714)
T KOG2220|consen 205 AQVVLFYEEALKAQIGARA-DR-------ITKEWLTLVAAKFARFAGVAYYYQSLFLHEKSKDGEAIARLQLSLLMLSEA 276 (714)
T ss_pred HHHHHHHHHHHHHHHHhhh-cc-------cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4567778888777776221 11 244788888899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 007509 467 LKDFQ 471 (601)
Q Consensus 467 ~~~~~ 471 (601)
.+...
T Consensus 277 qk~~~ 281 (714)
T KOG2220|consen 277 QKCSF 281 (714)
T ss_pred HHhhc
Confidence 87533
No 33
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=42.97 E-value=63 Score=22.00 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 007509 158 ASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191 (601)
Q Consensus 158 ~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~ 191 (601)
+..-.|.+++..+ +|++|+..+..+..++..+-
T Consensus 4 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 4 ALNNLANAYRAQG-RYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHHCT--HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhh-hcchhhHHHHHHHHHHHHHh
Confidence 3445678888887 99999999999999998873
No 34
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=42.47 E-value=1.3e+02 Score=24.59 Aligned_cols=33 Identities=33% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
.+.-|--.-..|+|.||+.+|..|.+.+-.+..
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k 41 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEYFMHALK 41 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 334455667789999999999999999988765
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=41.87 E-value=37 Score=27.74 Aligned_cols=21 Identities=38% Similarity=0.311 Sum_probs=17.9
Q ss_pred HHHHHHhhCChHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRA 459 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra 459 (601)
+|++|...|+|.||+..|.+|
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 699999999999999998875
No 36
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=41.15 E-value=41 Score=20.20 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+.+|.+|...+++.+|...|.++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3489999999999999999987764
No 37
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=40.26 E-value=58 Score=23.27 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 007509 158 ASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191 (601)
Q Consensus 158 ~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~ 191 (601)
.-...|...+|.. +|+.|+.-|..|-.|...|.
T Consensus 3 v~~~Lgeisle~e-~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 3 VYDLLGEISLENE-NFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhc
Confidence 3456799999999 99999999999999988774
No 38
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.13 E-value=1e+02 Score=31.16 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---CChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcCCChhhHHH
Q 007509 125 IGRLRKAVKWATLFSNLCAIK---ADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVL 201 (601)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~---~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~~~~~~~~~~l 201 (601)
.....+-+.|+...+++.+.. ...+...=...|..+-.|..+|..+ +|++|+..|..+-..|- +. =
T Consensus 144 ~~~~e~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g-~~~~A~~~l~~~~~~yr---~e-------g 212 (247)
T PF11817_consen 144 LQSEEKGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLG-DYDKALKLLEPAASSYR---RE-------G 212 (247)
T ss_pred hhccccccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH---hC-------C
Confidence 333345566776666665431 1122223356788889999999997 99999999887722221 11 2
Q ss_pred HHHHHHhhhhhHHHHhhccCCC
Q 007509 202 CRERVEELEPSIRYCLHKIGES 223 (601)
Q Consensus 202 ~~~~ve~idp~lRycay~l~~~ 223 (601)
...++.++-..++.|++++|..
T Consensus 213 W~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 213 WWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred cHHHHHHHHHHHHHHHHHhCCH
Confidence 4566778899999999999754
No 39
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=39.85 E-value=4e+02 Score=27.06 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhccC--CC-----CC-Ccchh-----HHHHHHHHHHHHHHHHHHHHH---hhc-C--------C
Q 007509 93 HLVLYTAERAWSHAMEKRQL--PD-----GP-NARQR-----IYLIGRLRKAVKWATLFSNLC---AIK-A--------D 147 (601)
Q Consensus 93 ~llLl~AERaWAyAm~lk~~--~~-----~~-~~r~R-----~h~~~RLkKA~~~A~~L~~l~---~~~-~--------d 147 (601)
.++.+.|-.=++.||++... .. +. .++.| .-+..|++..+..|+.|-.-+ +.. . .
T Consensus 73 LVLYvKaL~lLa~am~~a~~~w~~~~~~~~~~~~S~~vn~vVqwlr~rfneclekae~lr~~l~~~~~~l~~~~~~~~~~ 152 (238)
T PF12063_consen 73 LVLYVKALSLLAKAMDIASAWWYSKNRGSGSLNPSSRVNQVVQWLRERFNECLEKAEFLRLRLQEAQKQLPDDHPSMPSS 152 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccccCc
Confidence 44566777788888885432 11 11 11111 123344444444444444333 110 0 1
Q ss_pred hhhHHHHHHHHHHHH-----HHHHhhchhhHHHHHHHHHHHHHHHHHHhcCC--------ChhhHHHHHHHHHhhhhhHH
Q 007509 148 PRTSLEAEAYASYMK-----GNLLFEQDQNWETALKNFKSARAVYEELGKYG--------DVENQVLCRERVEELEPSIR 214 (601)
Q Consensus 148 ~~t~lEa~aY~a~i~-----G~~~~E~~~~W~~al~~~~~ar~iy~~L~~~~--------~~~~~~l~~~~ve~idp~lR 214 (601)
.....|-..|..-+. +.-.+.++ ++..|...|..|-..++.|.... +.+++.+....++-|.--|+
T Consensus 153 ~~itAekLiYdrALemsr~AA~~El~g~-~~~~ce~~Y~tA~~lLe~Ll~~~~~~~~~~~~~~Dr~~i~k~i~sI~~RL~ 231 (238)
T PF12063_consen 153 SGITAEKLIYDRALEMSRTAAVDELFGE-NLEGCEQRYETAIWLLEALLDDDDLEEENPLDEEDREIIKKYIDSIENRLS 231 (238)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCc-CHhHHHHHHHHHHHHHHHHHhHhhccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 234577788865443 23444455 99999999999999999998765 45567777777777776666
Q ss_pred HHhhc
Q 007509 215 YCLHK 219 (601)
Q Consensus 215 ycay~ 219 (601)
.+.-+
T Consensus 232 ~Lr~k 236 (238)
T PF12063_consen 232 ALRKK 236 (238)
T ss_pred HHHHc
Confidence 65443
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=39.72 E-value=48 Score=25.67 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 007509 156 AYASYMKGNLLFEQDQNWETALKNFKSARAV 186 (601)
Q Consensus 156 aY~a~i~G~~~~E~~~~W~~al~~~~~ar~i 186 (601)
|+.....|..++..+ +|++|+..|..|-.+
T Consensus 3 a~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQG-DYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 566778899999997 999999988877543
No 41
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.65 E-value=55 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
.|++|-.|...|.|.+|+...+.+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35599999999999999988888765
No 42
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.32 E-value=1.5e+02 Score=24.77 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 430 AFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 430 ~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
|=+|+.|.-.|-.+-..|.+.+|+++|..+..++.++..
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 446788888999999999999999999999999998875
No 43
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=37.64 E-value=59 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 007509 157 YASYMKGNLLFEQDQNWETALKNFKSAR 184 (601)
Q Consensus 157 Y~a~i~G~~~~E~~~~W~~al~~~~~ar 184 (601)
++.|..|.+.+..+ +|++|...|....
T Consensus 1 ~a~~~~a~~~~~~g-~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 1 DALYRLARCYYKLG-DYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcc-CHHHHHHHHHHHH
Confidence 45677888888887 9999999876543
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=37.16 E-value=6.5e+02 Score=28.63 Aligned_cols=124 Identities=17% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchhhhhhHHHHHHHHHHHHH-------------HHhhHHHHHHHHhhhcc
Q 007509 308 LVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRT-------------IERNQLLVSIVKGKLTK 374 (601)
Q Consensus 308 ~~~yd~~l~~~~dA~~~~k~~i~~~~~~~~~~~el~~l~~yi~~~~l~~t-------------IeRn~~Li~~l~~~~~~ 374 (601)
+..|++.+..|++|+++-.+-.-.... ...+.++.|... ++|-+-+.....
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~-----------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~----- 317 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHP-----------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL----- 317 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCH-----------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-----
Q ss_pred cccccCCCCCChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHh
Q 007509 375 QRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFY---------LARSYSL 445 (601)
Q Consensus 375 ~~~~~~~k~~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~---------lA~sy~~ 445 (601)
.+.+.++-..+.++......+.+- ..+..-+...+.... ++.-|.. ||.+|..
T Consensus 318 --------~~~~~~v~~~l~~~~~~~~~~~~~-------Eea~~l~q~al~i~~---~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 318 --------GASHPEVAAQLSELAAILQSMNEY-------EEAKKLLQKALKIYL---DAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred --------ccChHHHHHHHHHHHHHHHHhcch-------hHHHHHHHHHHHHHH---hhccccchHHHHHHHHHHHHHHH
Q ss_pred hCChHHHHHHHHHHHHHHHH
Q 007509 446 AGKRTEAYALYCRARSHAEN 465 (601)
Q Consensus 446 ~~K~~EAlaL~~ra~~~~~~ 465 (601)
.|||.||.-+|..|.+...+
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred hcchhHHHHHHHHHHHHHHh
No 45
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=36.64 E-value=78 Score=20.72 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.8
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 007509 159 SYMKGNLLFEQDQNWETALKNFKSARAV 186 (601)
Q Consensus 159 a~i~G~~~~E~~~~W~~al~~~~~ar~i 186 (601)
-++.|.++...+ ++++|++.|..|..+
T Consensus 4 ~~~lg~~y~~~~-~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLG-DYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 357888999887 999999999988765
No 46
>PF15118 DUF4560: Domain of unknown function (DUF4560)
Probab=36.50 E-value=14 Score=28.76 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=11.4
Q ss_pred hhhhhhcc-ccCCCC
Q 007509 570 IVLDLAYN-FIDFPS 583 (601)
Q Consensus 570 lfFDlA~N-yi~yP~ 583 (601)
+||||||- .++||=
T Consensus 34 ~FFdLAWrLr~nFpy 48 (65)
T PF15118_consen 34 TFFDLAWRLRMNFPY 48 (65)
T ss_pred HHHHHHHHHHcCCch
Confidence 58999998 668874
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=34.35 E-value=64 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
+.+|..|...|+|.+|+..|.+|.+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 448999999999999999999998754
No 48
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=32.63 E-value=62 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.110 Sum_probs=22.9
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
..|.+|...|+|.+|+..|+++.+..
T Consensus 34 ~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 34 QRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 47899999999999999999998644
No 49
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=32.27 E-value=1.4e+02 Score=24.22 Aligned_cols=37 Identities=27% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 432 ~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
+|.....-|..+-..|+|.||+.+|..|.+.+..+.+
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444444566677789999999999999999988775
No 50
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=31.20 E-value=14 Score=18.81 Aligned_cols=7 Identities=71% Similarity=1.573 Sum_probs=5.7
Q ss_pred hhHHHHh
Q 007509 211 PSIRYCL 217 (601)
Q Consensus 211 p~lRyca 217 (601)
|-||||-
T Consensus 4 pvirycc 10 (11)
T PF08097_consen 4 PVIRYCC 10 (11)
T ss_pred chhheec
Confidence 7899985
No 51
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=31.04 E-value=2.9e+02 Score=29.67 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhhhhHHHHhhcc
Q 007509 146 ADPRTSLEAEAYASYMKGNLLFEQDQNWETA-LKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKI 220 (601)
Q Consensus 146 ~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~a-l~~~~~ar~iy~~L~~~~~~~~~~l~~~~ve~idp~lRycay~l 220 (601)
......+|-.|+..|-.+--..-.. .|... ...|..|...|+.| .+|.++-+++.--++||-|++
T Consensus 70 ~~~~~~v~~fa~~~f~~a~~~~~~~-~~~~~~~~~f~~a~~~~~~l---------~~f~~~~~~~~~k~kyak~~a 135 (380)
T PF04652_consen 70 VAAQAYVENFALKLFNRADKEDRAG-RATKQTAKTFYAASTFFEVL---------NIFGELDEEIEEKIKYAKWKA 135 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHH---------HHhCCCChHHhhceeeeeeeH
Confidence 3445667777777776666665444 66554 46788888888888 567777788999999999997
No 52
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=30.27 E-value=1.6e+02 Score=26.10 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-HHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 429 LAFRAERCFY-LARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 429 ~~f~A~rc~~-lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
.||++.+..+ -|..|...|....|..||-|....+ +.+..
T Consensus 33 ~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~ 73 (115)
T PF08969_consen 33 RYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPK 73 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhc
Confidence 5888888877 9999999999999999999999999 66653
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=29.04 E-value=59 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
|.+|..|...|+|.+|...|+++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~ 25 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK 25 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578999999999999999998865
No 54
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=27.68 E-value=74 Score=28.70 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
|.+|.+|...|++.+|..+|.+|+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALA 29 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5599999999999999999999977
No 55
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.15 E-value=2.9e+02 Score=22.90 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=36.8
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHh
Q 007509 160 YMKGNLLFEQDQNWETALKNFKSARAVYEELGKY-GDVENQVLCRERVEE 208 (601)
Q Consensus 160 ~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~~~-~~~~~~~l~~~~ve~ 208 (601)
++.-....+++|++++|+..|..|-..+-++... .|.....+|++++.+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4555666777789999999999998888888766 455566777777644
No 56
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=26.09 E-value=2.8e+02 Score=21.94 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHH
Q 007509 160 YMKGNLLFEQDQNWETALKNFKSARAVYEELGKYG-DVENQVLCRERVE 207 (601)
Q Consensus 160 ~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~~~~-~~~~~~l~~~~ve 207 (601)
++.-....+..|++++|+..|..|-..+....+.. ++....++.+.+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~ 56 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMK 56 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 44555566666799999999999888888877664 3344455555543
No 57
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=25.17 E-value=35 Score=23.02 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=10.8
Q ss_pred HHHHHHhcccCCCC
Q 007509 398 QNTADLSDLVSSGR 411 (601)
Q Consensus 398 q~l~ei~eLpgv~~ 411 (601)
.+++|++.||||+.
T Consensus 8 as~eeL~~lpGIG~ 21 (30)
T PF00633_consen 8 ASIEELMKLPGIGP 21 (30)
T ss_dssp SSHHHHHTSTT-SH
T ss_pred CCHHHHHhCCCcCH
Confidence 46899999999973
No 58
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=24.84 E-value=3.9e+02 Score=21.90 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 434 ERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 434 ~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
.-.+.-|--.-..|+|.||+.||..+.+++-.+.+
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k 41 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVPALH 41 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 33344455667789999999999999999988775
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=24.21 E-value=1e+02 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=13.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHH
Q 007509 161 MKGNLLFEQDQNWETALKNFKS 182 (601)
Q Consensus 161 i~G~~~~E~~~~W~~al~~~~~ 182 (601)
+.|..+++.+ +|++|++.|..
T Consensus 63 l~a~~~~~l~-~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLG-KYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHhc
Confidence 4466677676 77777776654
No 60
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=22.24 E-value=65 Score=24.76 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+.+|.+|...|++.+|..++.++..
T Consensus 29 ~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 29 LLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4599999999999999999887754
No 61
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=20.97 E-value=1.3e+02 Score=21.06 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCChHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYC 457 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ 457 (601)
+.+|..+...|||.+|.-+|+
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 458999999999999999966
No 62
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=20.74 E-value=1.3e+02 Score=22.71 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
++.+|..|...|+|.+|+..|.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 29 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL 29 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345888888889999999888887653
No 63
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=20.51 E-value=4.5e+02 Score=21.05 Aligned_cols=31 Identities=32% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
.-|--.-..|+|.+|+-+|..|.+.+..+..
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3455566679999999999999999988764
Done!