Query 007509
Match_columns 601
No_of_seqs 125 out of 231
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rau_A Tyrosine-protein phosph 87.5 5.5 0.00019 41.5 13.1 77 388-470 211-289 (363)
2 3r9m_A BRO1 domain-containing 74.5 10 0.00035 39.5 9.4 75 388-471 217-291 (376)
3 3c3r_A Programmed cell death 6 73.2 12 0.00042 39.0 9.6 74 387-470 239-312 (380)
4 3n71_A Histone lysine methyltr 72.2 90 0.0031 33.5 16.5 63 384-467 365-427 (490)
5 1zb1_A BRO1 protein; AIP1, BRO 70.6 12 0.00039 39.4 8.7 77 388-469 217-293 (392)
6 2rpa_A Katanin P60 ATPase-cont 65.3 20 0.00069 28.8 7.0 33 437-469 16-48 (78)
7 3qww_A SET and MYND domain-con 64.0 1.4E+02 0.0047 31.5 15.6 63 384-467 354-416 (433)
8 2xs1_A Programmed cell death 6 61.0 29 0.00099 39.3 10.1 73 388-470 225-297 (704)
9 3qwp_A SET and MYND domain-con 60.3 49 0.0017 34.9 11.2 35 433-467 371-405 (429)
10 3ma5_A Tetratricopeptide repea 59.4 28 0.00096 27.7 7.3 28 437-464 45-72 (100)
11 2w2u_A Hypothetical P60 katani 59.4 24 0.00083 28.5 6.7 37 433-469 19-55 (83)
12 3ro3_A PINS homolog, G-protein 49.4 58 0.002 26.7 8.0 60 126-190 23-82 (164)
13 2v6y_A AAA family ATPase, P60 46.8 38 0.0013 27.3 5.9 38 432-469 10-47 (83)
14 3gw4_A Uncharacterized protein 43.6 76 0.0026 27.7 8.2 62 125-191 120-181 (203)
15 2v5f_A Prolyl 4-hydroxylase su 43.4 27 0.00092 28.5 4.6 31 434-464 6-36 (104)
16 3ro3_A PINS homolog, G-protein 43.1 62 0.0021 26.5 7.2 58 126-188 103-160 (164)
17 1wfd_A Hypothetical protein 15 42.6 44 0.0015 27.5 5.8 37 432-468 14-50 (93)
18 4ga2_A E3 SUMO-protein ligase 41.7 24 0.00084 30.5 4.4 31 433-463 31-61 (150)
19 3ma5_A Tetratricopeptide repea 40.6 26 0.0009 27.9 4.1 27 437-463 11-37 (100)
20 3gyz_A Chaperone protein IPGC; 40.6 1.3E+02 0.0044 26.3 9.1 23 439-461 110-132 (151)
21 1na3_A Designed protein CTPR2; 40.3 30 0.001 26.0 4.3 27 436-462 12-38 (91)
22 4a5x_A MITD1, MIT domain-conta 39.7 1.4E+02 0.0047 24.1 8.2 30 439-468 22-51 (86)
23 3qww_A SET and MYND domain-con 38.6 80 0.0027 33.3 8.5 62 384-467 312-374 (433)
24 2kc7_A BFR218_protein; tetratr 37.6 32 0.0011 26.7 4.1 26 437-462 39-64 (99)
25 3edt_B KLC 2, kinesin light ch 36.3 1.8E+02 0.0061 26.4 9.9 66 125-193 56-121 (283)
26 2xcb_A PCRH, regulatory protei 36.0 1.7E+02 0.006 24.2 9.1 26 438-463 91-116 (142)
27 3k9i_A BH0479 protein; putativ 34.6 36 0.0012 27.6 4.1 26 437-462 31-56 (117)
28 2xze_A STAM-binding protein; h 34.6 1.8E+02 0.0061 25.9 9.0 45 428-472 34-79 (146)
29 4gcn_A Protein STI-1; structur 34.3 53 0.0018 27.4 5.3 27 435-461 84-111 (127)
30 2l6j_A TPR repeat-containing p 33.9 50 0.0017 25.7 4.8 27 436-462 7-33 (111)
31 3vtx_A MAMA; tetratricopeptide 33.8 34 0.0012 29.9 4.1 25 438-462 10-34 (184)
32 1na3_A Designed protein CTPR2; 32.4 48 0.0016 24.8 4.3 26 437-462 47-72 (91)
33 3k9i_A BH0479 protein; putativ 31.7 43 0.0015 27.2 4.1 26 437-462 65-90 (117)
34 3gw4_A Uncharacterized protein 31.5 1.4E+02 0.005 25.8 8.0 59 126-189 40-98 (203)
35 3upv_A Heat shock protein STI1 31.2 1.2E+02 0.0039 24.5 6.8 27 437-463 76-102 (126)
36 2kat_A Uncharacterized protein 30.9 49 0.0017 26.5 4.3 26 437-462 23-48 (115)
37 3n71_A Histone lysine methyltr 30.9 1.2E+02 0.0042 32.4 8.6 62 384-467 323-385 (490)
38 1qqe_A Vesicular transport pro 30.7 1.7E+02 0.0057 28.0 8.9 31 434-464 77-108 (292)
39 2hr2_A Hypothetical protein; a 30.5 1E+02 0.0034 28.0 6.6 65 382-464 69-133 (159)
40 2dl1_A Spartin; SPG20, MIT, st 30.4 1.8E+02 0.006 25.1 7.7 43 426-468 15-57 (116)
41 2kat_A Uncharacterized protein 30.1 57 0.0019 26.1 4.6 28 437-464 57-84 (115)
42 2l6j_A TPR repeat-containing p 29.8 39 0.0013 26.4 3.4 25 437-461 42-66 (111)
43 2kck_A TPR repeat; tetratricop 29.6 52 0.0018 25.3 4.1 26 437-462 44-69 (112)
44 3edt_B KLC 2, kinesin light ch 29.4 1.9E+02 0.0064 26.3 8.8 63 126-191 99-161 (283)
45 4gcn_A Protein STI-1; structur 29.3 1.6E+02 0.0056 24.2 7.6 55 125-184 55-110 (127)
46 2fbn_A 70 kDa peptidylprolyl i 29.0 87 0.003 27.8 6.1 26 437-462 92-117 (198)
47 3qky_A Outer membrane assembly 28.8 2.2E+02 0.0076 26.2 9.3 27 436-462 151-177 (261)
48 2v6x_A Vacuolar protein sortin 28.8 2.2E+02 0.0074 22.5 8.5 30 439-468 19-48 (85)
49 3rkv_A Putative peptidylprolyl 28.7 93 0.0032 26.6 6.1 68 384-462 25-92 (162)
50 1hxi_A PEX5, peroxisome target 28.7 51 0.0018 27.3 4.1 26 437-462 55-80 (121)
51 3upv_A Heat shock protein STI1 28.5 69 0.0024 25.9 4.9 23 439-461 44-66 (126)
52 2xev_A YBGF; tetratricopeptide 28.5 53 0.0018 26.5 4.1 26 437-462 43-68 (129)
53 2rkl_A Vacuolar protein sortin 28.4 74 0.0025 23.5 4.2 39 147-188 13-51 (53)
54 2dba_A Smooth muscle cell asso 28.2 1.8E+02 0.006 23.5 7.6 26 437-462 69-94 (148)
55 2xcb_A PCRH, regulatory protei 27.3 55 0.0019 27.6 4.1 26 437-462 56-81 (142)
56 2cpt_A SKD1 protein, vacuolar 27.3 1E+02 0.0036 26.4 5.8 30 439-468 24-53 (117)
57 3qwp_A SET and MYND domain-con 27.2 1.6E+02 0.0054 30.8 8.5 29 439-467 335-363 (429)
58 3u3w_A Transcriptional activat 27.1 1E+02 0.0035 29.5 6.6 30 436-465 157-187 (293)
59 2crb_A Nuclear receptor bindin 27.0 71 0.0024 26.5 4.3 31 439-469 21-51 (97)
60 2v5f_A Prolyl 4-hydroxylase su 27.0 1.2E+02 0.0042 24.3 6.1 26 437-462 50-75 (104)
61 3gyz_A Chaperone protein IPGC; 26.9 54 0.0019 28.8 4.1 25 438-462 75-99 (151)
62 3vtx_A MAMA; tetratricopeptide 26.8 51 0.0017 28.7 4.0 26 437-462 145-170 (184)
63 2vgx_A Chaperone SYCD; alterna 26.7 56 0.0019 28.2 4.1 27 437-463 93-119 (148)
64 4g1t_A Interferon-induced prot 26.4 5E+02 0.017 25.9 23.1 62 124-186 106-167 (472)
65 2vgx_A Chaperone SYCD; alterna 26.2 58 0.002 28.1 4.1 26 437-462 59-84 (148)
66 4gco_A Protein STI-1; structur 26.2 60 0.002 27.1 4.1 26 437-462 85-110 (126)
67 1elr_A TPR2A-domain of HOP; HO 25.1 89 0.003 24.6 4.9 25 439-463 44-68 (131)
68 1na0_A Designed protein CTPR3; 25.1 72 0.0025 24.8 4.3 26 437-462 13-38 (125)
69 2qfc_A PLCR protein; TPR, HTH, 24.6 1.2E+02 0.0042 28.9 6.6 27 438-464 201-227 (293)
70 1elr_A TPR2A-domain of HOP; HO 24.2 89 0.003 24.6 4.8 24 438-461 9-32 (131)
71 3u3w_A Transcriptional activat 23.0 1.5E+02 0.0052 28.2 7.0 29 437-465 200-228 (293)
72 2lni_A Stress-induced-phosphop 22.9 83 0.0028 25.0 4.3 26 437-462 88-113 (133)
73 4gco_A Protein STI-1; structur 22.7 77 0.0026 26.4 4.1 25 438-462 52-76 (126)
74 2ifu_A Gamma-SNAP; membrane fu 22.7 3.2E+02 0.011 26.2 9.4 76 382-465 68-147 (307)
75 2vyi_A SGTA protein; chaperone 22.4 86 0.003 24.6 4.3 26 437-462 84-109 (131)
76 2kc7_A BFR218_protein; tetratr 22.3 84 0.0029 24.1 4.1 26 437-462 4-29 (99)
77 3rkv_A Putative peptidylprolyl 22.3 75 0.0026 27.2 4.1 25 438-462 102-126 (162)
78 1elw_A TPR1-domain of HOP; HOP 22.0 1.1E+02 0.0039 23.3 4.9 23 439-461 10-32 (118)
79 1na0_A Designed protein CTPR3; 22.0 90 0.0031 24.2 4.3 26 437-462 47-72 (125)
80 1elw_A TPR1-domain of HOP; HOP 21.9 90 0.0031 24.0 4.3 26 437-462 42-67 (118)
81 3sz7_A HSC70 cochaperone (SGT) 21.9 82 0.0028 27.0 4.3 26 438-463 50-75 (164)
82 3sz7_A HSC70 cochaperone (SGT) 21.8 1E+02 0.0035 26.4 4.9 28 436-463 14-41 (164)
83 2xev_A YBGF; tetratricopeptide 21.8 84 0.0029 25.2 4.1 26 437-462 80-105 (129)
84 2kck_A TPR repeat; tetratricop 21.7 59 0.002 25.0 3.0 26 437-462 10-35 (112)
85 3q15_A PSP28, response regulat 21.1 2.3E+02 0.0079 28.0 8.1 30 437-466 340-369 (378)
86 2fo7_A Synthetic consensus TPR 21.0 94 0.0032 24.3 4.3 25 437-461 5-29 (136)
87 1pc2_A Mitochondria fission pr 20.6 92 0.0032 28.1 4.3 25 437-461 75-99 (152)
88 3q49_B STIP1 homology and U bo 20.5 1.1E+02 0.0039 24.7 4.8 23 439-461 15-37 (137)
89 2hr2_A Hypothetical protein; a 20.4 1.8E+02 0.0063 26.2 6.4 34 154-188 9-42 (159)
90 2vyi_A SGTA protein; chaperone 20.1 1E+02 0.0035 24.1 4.3 26 437-462 50-75 (131)
No 1
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=87.50 E-value=5.5 Score=41.50 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHh--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007509 388 ELVRLYDLLLQNTADLS--DLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAEN 465 (601)
Q Consensus 388 eivrLyd~ilq~l~ei~--eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (601)
++..+|+.....+.... .+.| .-+.++..-+..+..+|+|.=||+.|......+|+-||+|-+..|...+.+
T Consensus 211 q~~~~Y~~a~~~l~~~~~~~~~~------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 284 (363)
T 3rau_A 211 QVVDYYKEACRALENPDTASLLG------RIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNE 284 (363)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHT------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35566766666654321 1112 124578888999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 007509 466 ALKDF 470 (601)
Q Consensus 466 a~~~~ 470 (601)
+.+..
T Consensus 285 a~~~~ 289 (363)
T 3rau_A 285 AIKLA 289 (363)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88653
No 2
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=74.46 E-value=10 Score=39.54 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 388 eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
++..+|+.....+..+ +. .-+..+..-+..+..+|+|.=||+.|......+||-||++-+..|.+.+.++.
T Consensus 217 q~~~~Y~~a~~~l~~~---~~------~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 287 (376)
T 3r9m_A 217 ETANFYQKADHTLSSL---EP------AYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAE 287 (376)
T ss_dssp HHHHHHHHHHHHHTTS---CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 4556666666555432 11 12446778899999999999999999999999999999999999999999888
Q ss_pred HHHh
Q 007509 468 KDFQ 471 (601)
Q Consensus 468 ~~~~ 471 (601)
+..+
T Consensus 288 ~~~~ 291 (376)
T 3r9m_A 288 ALCK 291 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 3
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=73.21 E-value=12 Score=39.05 Aligned_cols=74 Identities=8% Similarity=-0.015 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 387 ~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
.++..+|+.....+. +.+. . +..+..-+..+..+|+|.=+|+.|...-..+|+.||+|.+..|...+.++
T Consensus 239 ~~~~~~Y~~A~~~l~----~~~~----~--~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 308 (380)
T 3c3r_A 239 NQAADYFGDAFKQCQ----YKDT----L--PKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTV 308 (380)
T ss_dssp HHHHHHHHHHHHHHT----TCCC----S--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----cccc----c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 345667777776665 2221 1 23777888999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 007509 467 LKDF 470 (601)
Q Consensus 467 ~~~~ 470 (601)
.+..
T Consensus 309 ~~~~ 312 (380)
T 3c3r_A 309 ASRY 312 (380)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7653
No 4
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=72.16 E-value=90 Score=33.50 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 384 ~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
.++.+-..+|.-.+...+.+. | .+..+.... ...||..|...|+|.||..+|.+|+...
T Consensus 365 g~~~eA~~~~~~aL~i~~~~l---G------~~Hp~~a~~------------l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 365 QAYEEASHYARRMVDGYMKLY---H------HNNAQLGMA------------VMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHS---C------TTCHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHc---C------CCCHHHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467788888888887777653 3 223333222 2349999999999999999999999988
Q ss_pred HHHH
Q 007509 464 ENAL 467 (601)
Q Consensus 464 ~~a~ 467 (601)
..+.
T Consensus 424 ~~~l 427 (490)
T 3n71_A 424 LVTH 427 (490)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7665
No 5
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=70.64 E-value=12 Score=39.36 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 388 eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
+...+|+.....+..... ++. + .-+..+..-+..+..+|+|.=+|+.|...-..+|+-||+|.+..|.+.+.++.
T Consensus 217 ~~~~~Y~~a~~~l~~~~~--~~~-~--~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 291 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDD--DVA-I--YGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSL 291 (392)
T ss_dssp HHHHHHHHHHHHHHSCCC--TTT-S--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhccc--ccc-c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 466777777776664320 110 0 01458888899999999999999999999999999999999999999999887
Q ss_pred HH
Q 007509 468 KD 469 (601)
Q Consensus 468 ~~ 469 (601)
+.
T Consensus 292 ~~ 293 (392)
T 1zb1_A 292 PF 293 (392)
T ss_dssp GG
T ss_pred Hh
Confidence 64
No 6
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=65.26 E-value=20 Score=28.78 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
..+|+-|+..|+|..|+..|+-+.+.+..-...
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 449999999999999999999999998766543
No 7
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=64.04 E-value=1.4e+02 Score=31.48 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 384 ~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
.++.+=..+|.-.+...+.+- | .+..+.... -..||..|...|+|.||+.+|.+|+...
T Consensus 354 g~~~eA~~~~~~aL~i~~~~l---G------~~Hp~~a~~------------l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 354 QDWEGALKYGQKIIKPYSKHY---P------VYSLNVASM------------WLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHHHS---C------SSCHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHc---C------CCChHHHHH------------HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 477888889988888888763 3 223333222 2359999999999999999999999988
Q ss_pred HHHH
Q 007509 464 ENAL 467 (601)
Q Consensus 464 ~~a~ 467 (601)
..+.
T Consensus 413 ~~~l 416 (433)
T 3qww_A 413 EVAH 416 (433)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7664
No 8
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=61.02 E-value=29 Score=39.29 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 388 eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
++..+|+.....+. +. +. -+..+..-+..+..+|+|.=|||.|......+||.||+|.+..|...+.++.
T Consensus 225 ~~~~~Y~~A~~~l~-~~---~~------~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 294 (704)
T 2xs1_A 225 QAADYFGDAFKQCQ-YK---DT------LPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVA 294 (704)
T ss_dssp HHHHHHHHHHHHHH-TC---CC------SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cc---cc------ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777665 21 11 1237788889999999999999999999999999999999999999999888
Q ss_pred HHH
Q 007509 468 KDF 470 (601)
Q Consensus 468 ~~~ 470 (601)
+..
T Consensus 295 ~~~ 297 (704)
T 2xs1_A 295 SRY 297 (704)
T ss_dssp HHS
T ss_pred HHh
Confidence 654
No 9
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=60.27 E-value=49 Score=34.86 Aligned_cols=35 Identities=9% Similarity=-0.107 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 433 AERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
|.-.+.||..|...|+|.||+.+|.+|+.....+.
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 33345599999999999999999999999888765
No 10
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=59.41 E-value=28 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
+.+|.+|...|+|.+|+..|.++.....
T Consensus 45 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 45 YHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3489999999999999999999987654
No 11
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.40 E-value=24 Score=28.51 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 433 AERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
|...+.-|--.-..|+|.||+.+|..|.+.+..+...
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~ 55 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSL 55 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566688999999999999999999988764
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=49.36 E-value=58 Score=26.74 Aligned_cols=60 Identities=23% Similarity=0.159 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 007509 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEEL 190 (601)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L 190 (601)
.++.+|..+..+.+.++....+... .+...+..|..++..+ +|++|+..|..+..++...
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 23 GNFRDAVIAHEQRLLIAKEFGDKAA----ERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQL 82 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Confidence 4566888888888877766555433 3455566788889887 9999999999988776654
No 13
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.82 E-value=38 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 432 ~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
+|.....-|--.-..|+|.||+.||..|.+.+..+...
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~ 47 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVL 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556667788999999999999999999988753
No 14
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=43.56 E-value=76 Score=27.71 Aligned_cols=62 Identities=23% Similarity=0.151 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 007509 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191 (601)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~ 191 (601)
..++.+|..+..+...++....+... .++.....|.+++..+ +|++|...|..|..++..+.
T Consensus 120 ~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 120 FGDLAGARQEYEKSLVYAQQADDQVA----IACAFRGLGDLAQQEK-NLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHcC
Confidence 45677888888888877765555443 2444566788888887 99999999999988877664
No 15
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=43.35 E-value=27 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 434 ERCFYLARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 434 ~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
.=||.||..+...|.|..|..-|..|+.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 3499999999999999999999999988764
No 16
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=43.07 E-value=62 Score=26.54 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 007509 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188 (601)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~ 188 (601)
.++.+|..+....+.++....+... .+......|.+++..+ ++++|...|..+..+..
T Consensus 103 ~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 103 QDYEKAIDYHLKHLAIAQELKDRIG----EGRACWSLGNAYTALG-NHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHccchHh----HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHH
Confidence 3456677777776666654443322 2344455677777776 88888888877766654
No 17
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.58 E-value=44 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 432 ~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
+|...+.-|--.-..|+|.||+.+|..|.+.+-.+..
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556667889999999999999999988875
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=41.71 E-value=24 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 433 AERCFYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
+...|.||.+|...|+|.+|+..|.++.+.-
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 61 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ 61 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456789999999999999999999998753
No 19
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=40.65 E-value=26 Score=27.91 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
+.+|.+|...|+|.+|+..|.++...-
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 37 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETD 37 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 459999999999999999999998753
No 20
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=40.56 E-value=1.3e+02 Score=26.27 Aligned_cols=23 Identities=4% Similarity=-0.175 Sum_probs=13.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+|.+|...|++.+|+..|.+|..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666665554
No 21
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=40.33 E-value=30 Score=25.98 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
++.+|.+|...|+|.+|+..|.++...
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455899999999999999999999864
No 22
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=39.74 E-value=1.4e+02 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
-|--.-..|+|.||+.+|..|.+.+-.+..
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 444457889999999999999999988775
No 23
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=38.56 E-value=80 Score=33.31 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=43.2
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCF-YLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 384 ~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~-~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.++.|-+.+|.-.+...+.+. | ++..... +++ .||.+|...|+|.||+.+|.+++..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~l---g------~~Hp~~a-------------~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVF---E------DSNVYML-------------HMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTB---C------TTSHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCcc---C------hhchHHH-------------HHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 467777888777666655432 3 2232222 233 3899999999999999999999887
Q ss_pred HHHHH
Q 007509 463 AENAL 467 (601)
Q Consensus 463 ~~~a~ 467 (601)
.....
T Consensus 370 ~~~~l 374 (433)
T 3qww_A 370 YSKHY 374 (433)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 76554
No 24
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=37.56 E-value=32 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 39 ~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 39 YLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44899999999999999999999754
No 25
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=36.32 E-value=1.8e+02 Score=26.42 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcC
Q 007509 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKY 193 (601)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~~~ 193 (601)
..++.+|..+....+.+............+ ......|.+++..+ +|++|+..|..|..++..+...
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVA--ATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHH--HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHcCC
Confidence 345678888888887777554222222223 34455688888887 9999999999998888776544
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=36.02 E-value=1.7e+02 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=16.7
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
.+|.+|...|+|.+|+..|.++....
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 36666666677766666666665543
No 27
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=34.59 E-value=36 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34899999999999999999999765
No 28
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.58 E-value=1.8e+02 Score=25.86 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH-HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhh
Q 007509 428 SLAFRAERCFY-LARSYSLAGKRTEAYALYCRARSHAENALKDFQR 472 (601)
Q Consensus 428 ~~~f~A~rc~~-lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~~~~ 472 (601)
..||++..... .|..|...|....|+.||-|..+.+-+.++.-++
T Consensus 34 ~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpd 79 (146)
T 2xze_A 34 RRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRD 79 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCcc
Confidence 36777777666 9999999999999999999999999877764333
No 29
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=34.31 E-value=53 Score=27.37 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHH-HHHHHHhhCChHHHHHHHHHHHH
Q 007509 435 RCFY-LARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 435 rc~~-lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
++++ +|.+|...|+|.+|+..|.+|+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444 99999999999999999999865
No 30
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=33.87 E-value=50 Score=25.69 Aligned_cols=27 Identities=19% Similarity=-0.044 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.+.+|..|...|+|.+|+..|.++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345888888899999999998888764
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=33.77 E-value=34 Score=29.92 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.1
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.||.+|...|+|.+|+..|.+|++.
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~ 34 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKA 34 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999874
No 32
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=32.40 E-value=48 Score=24.75 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 47 YNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45899999999999999999999764
No 33
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=31.66 E-value=43 Score=27.20 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34899999999999999999999764
No 34
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=31.48 E-value=1.4e+02 Score=25.78 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 007509 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEE 189 (601)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~ 189 (601)
.++.+|..+..+.+.++....+... .+...+..|..++..+ +|++|+..|..|..++..
T Consensus 40 g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 40 DRFDEARASFQALQQQAQKSGDHTA----EHRALHQVGMVERMAG-NWDAARRCFLEERELLAS 98 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCHHH----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 4566888888888888876555433 3444566788888887 999999999998887764
No 35
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.20 E-value=1.2e+02 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
+.+|.+|...|+|.+|+..|.++....
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 348999999999999999999998865
No 36
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=30.91 E-value=49 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 23 ~~lg~~~~~~g~~~~A~~~~~~al~~ 48 (115)
T 2kat_A 23 FTLGKTYAEHEQFDAALPHLRAALDF 48 (115)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45889999999999999999998764
No 37
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=30.87 E-value=1.2e+02 Score=32.42 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCChHHHHHHHHHHHHH
Q 007509 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFY-LARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 384 ~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~-lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.++.+-+.+|.-.+...+.+. | ++..... +++. ||.+|...|+|.||..+|.+|+..
T Consensus 323 g~~~eA~~l~~~aL~~~~~~l---g------~~Hp~~a-------------~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVF---A------DTNLYVL-------------RLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTB---C------TTSHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc---C------CCCHHHH-------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 467888888877776555432 3 2232222 2333 899999999999999999999987
Q ss_pred HHHHH
Q 007509 463 AENAL 467 (601)
Q Consensus 463 ~~~a~ 467 (601)
.....
T Consensus 381 ~~~~l 385 (490)
T 3n71_A 381 YMKLY 385 (490)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 76543
No 38
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.67 E-value=1.7e+02 Score=28.04 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=26.4
Q ss_pred HHHHH-HHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 434 ERCFY-LARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 434 ~rc~~-lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
..++. +|.+|...|+|.+|+..|.+|.....
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34444 99999999999999999999998764
No 39
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=30.51 E-value=1e+02 Score=27.97 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=46.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 382 KVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 382 k~~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
++.+++|-+.-|+-.|..+..--++.. ++. ..+++++ |..|.++...|+|.||+.-|++|++
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~p-------d~~---------~A~~~~~--~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELNQ-------DEG---------KLWISAV--YSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTTS-------THH---------HHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCCC-------chH---------HHHHHHH--HhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 356899999999999987666655533 111 1121211 3489999999999999999999988
Q ss_pred HHH
Q 007509 462 HAE 464 (601)
Q Consensus 462 ~~~ 464 (601)
...
T Consensus 131 l~p 133 (159)
T 2hr2_A 131 MIE 133 (159)
T ss_dssp HHH
T ss_pred cCC
Confidence 754
No 40
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.40 E-value=1.8e+02 Score=25.07 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 426 LKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 426 a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
.+..|=+||+|..-|...-..|+-.+|+.||.+...++..++.
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~ 57 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGIS 57 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 4567788999888999998899999999999999999998876
No 41
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=30.06 E-value=57 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
+.+|.+|...|++.+|...|.++.....
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4589999999999999999999987653
No 42
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=29.77 E-value=39 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+.+|.+|...|+|.+|+..|.++..
T Consensus 42 ~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 42 SNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3589999999999999999999865
No 43
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=29.58 E-value=52 Score=25.31 Aligned_cols=26 Identities=12% Similarity=0.025 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 44 LMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45899999999999999999988754
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=29.41 E-value=1.9e+02 Score=26.26 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 007509 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191 (601)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~~L~ 191 (601)
.++.+|..+-.+.+.++....+..... .+......|.+++..+ +|++|+..|..+..++....
T Consensus 99 g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVLGKFHPD--VAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Confidence 345677777777777765432221122 2334456688888887 99999999998887766553
No 45
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=29.27 E-value=1.6e+02 Score=24.19 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 007509 125 IGRLRKAVKWATLFSNLCAIKA-DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSAR 184 (601)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~~-d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar 184 (601)
+.++.+|+.+..+.+++..+.. +.... +.+-+..|......+ +|++|++.|..|-
T Consensus 55 ~~~~~~A~~~~~~al~~~~~~~~~~~~~----a~~~~~lg~~~~~~~-~~~~A~~~~~kal 110 (127)
T 4gcn_A 55 EKKFAECVQFCEKAVEVGRETRADYKLI----AKAMSRAGNAFQKQN-DLSLAVQWFHRSL 110 (127)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHH----HHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccchhhHHH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 4567789998888888875443 33322 333455788888887 9999999988764
No 46
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=29.04 E-value=87 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34999999999999999999999875
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=28.85 E-value=2.2e+02 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.052 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.+.+|.+|...|+|.+|+..|.++...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 577999999999999999999999764
No 48
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.81 E-value=2.2e+02 Score=22.54 Aligned_cols=30 Identities=30% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
-|--.-..|+|.||+.+|..|.+++-.+..
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999999999988875
No 49
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=28.75 E-value=93 Score=26.55 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=44.7
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 384 ~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~f~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.++.+-+..|...+..+........ +.|.+. ..++- ..+.-.+.+|.+|...|+|.+|+..|.+|+..
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~------~~~~~~-~~~~~----~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREK------PGEPEW-VELDR----KNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSC------TTSHHH-HHHHH----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCC------CCHHHH-HHHHH----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4789999999999998877653211 122222 11111 11111234899999999999999999999875
No 50
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=28.67 E-value=51 Score=27.27 Aligned_cols=26 Identities=19% Similarity=-0.055 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|++.+|+..|.+|...
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34899999999999999999998764
No 51
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=28.50 E-value=69 Score=25.93 Aligned_cols=23 Identities=22% Similarity=-0.051 Sum_probs=12.9
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+|.+|...|+|.+|+..|.++..
T Consensus 44 ~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 44 RAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 52
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=28.48 E-value=53 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44899999999999999999998764
No 53
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=28.38 E-value=74 Score=23.54 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=32.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 007509 147 DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188 (601)
Q Consensus 147 d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~ 188 (601)
+.....+++-|+.|.-+.+.|| +|..|.+.+..|-.++.
T Consensus 13 ~~~~i~~AqK~aK~AiSAL~fe---Dv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 13 RASKIEQIQKLAKYAISALNYE---DLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcccc---cHHHHHHHHHHHHHHHh
Confidence 4456788999999999999994 88999999998877664
No 54
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.23 E-value=1.8e+02 Score=23.54 Aligned_cols=26 Identities=12% Similarity=-0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 69 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 69 RNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 44788888888888888888888764
No 55
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=27.28 E-value=55 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34899999999999999999999774
No 56
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.27 E-value=1e+02 Score=26.39 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHAENALK 468 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (601)
-|--.-..|+|.||+.||..|.+++-.+..
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 444556779999999999999999988865
No 57
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.16 E-value=1.6e+02 Score=30.82 Aligned_cols=29 Identities=14% Similarity=-0.094 Sum_probs=25.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHAENAL 467 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (601)
||.+|...|+|.||+.+|.+++.......
T Consensus 335 L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 335 AMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 88899999999999999999998776554
No 58
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=27.11 E-value=1e+02 Score=29.46 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHH-HHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007509 436 CFY-LARSYSLAGKRTEAYALYCRARSHAEN 465 (601)
Q Consensus 436 c~~-lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (601)
++. ||.+|...|+|.+|+..|.+|++....
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 187 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEA 187 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 444 999999999999999999999986653
No 59
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.03 E-value=71 Score=26.48 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=28.1
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHAENALKD 469 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (601)
-|..+...|+|.||+..+..|..++.+|.+.
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888999999999999999999999864
No 60
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=26.99 E-value=1.2e+02 Score=24.30 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.++|.+|...|++.+|+.++.+++..
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56899999999999999999999763
No 61
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=26.90 E-value=54 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.8
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.+|.+|...|+|.+|+..|.+|...
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhh
Confidence 4899999999999999999999774
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=26.84 E-value=51 Score=28.74 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|++.+|+..|.+|++.
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34899999999999999999999764
No 63
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=26.69 E-value=56 Score=28.15 Aligned_cols=27 Identities=22% Similarity=0.086 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
+.+|.+|...|++.+|+..|.++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 568999999999999999999997654
No 64
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=26.39 E-value=5e+02 Score=25.94 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 007509 124 LIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAV 186 (601)
Q Consensus 124 ~~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~i 186 (601)
.+.++.+|..+-++...++....+.....-+.+|...-.+.+.+.++ +|++|++.|..|-.+
T Consensus 106 ~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN-QNERAKVCFEKALEK 167 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHh
Confidence 35677899999888888887543332211234454444445556666 999999999877543
No 65
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=26.22 E-value=58 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35899999999999999999999764
No 66
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=26.19 E-value=60 Score=27.11 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.+|++.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999763
No 67
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.14 E-value=89 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=14.6
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
+|.+|...|+|.+|+..|.++....
T Consensus 44 la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 44 QAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5666666666666666666555543
No 68
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=25.07 E-value=72 Score=24.84 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|..|...|+|.+|+.+|.++...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 38 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL 38 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45888888899999999999888764
No 69
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=24.64 E-value=1.2e+02 Score=28.92 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=24.9
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSHAE 464 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (601)
.+|.+|...|+|.+|+..|++|.....
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 499999999999999999999998764
No 70
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=24.25 E-value=89 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
.+|..|...|+|.+|+.+|.++..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~ 32 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKE 32 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Confidence 366666666666666666666654
No 71
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=23.03 E-value=1.5e+02 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHAEN 465 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (601)
+.+|.+|...|+|.+|+..|.+|......
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999987653
No 72
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=22.85 E-value=83 Score=25.04 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44899999999999999999998764
No 73
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=22.68 E-value=77 Score=26.41 Aligned_cols=25 Identities=8% Similarity=-0.242 Sum_probs=22.3
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.+|.+|...|+|.+|+..|.+|.+.
T Consensus 52 ~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 52 NRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHh
Confidence 4899999999999999999998764
No 74
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=22.67 E-value=3.2e+02 Score=26.18 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHH---HHHHHHHHH-HHHHHHhhCChHHHHHHHH
Q 007509 382 KVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSL---AFRAERCFY-LARSYSLAGKRTEAYALYC 457 (601)
Q Consensus 382 k~~k~~eivrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~---~f~A~rc~~-lA~sy~~~~K~~EAlaL~~ 457 (601)
+...+.+....|.++-.....+.+... .-..|...++.... ...+..++. +|.+|.. |+|.+|+..|.
T Consensus 68 ~~~~~~~~a~~~~~lg~~~~~~g~~~~-------A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 68 NNRSLFHAAKAFEQAGMMLKDLQRMPE-------AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGG-------GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCCCHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Q ss_pred HHHHHHHH
Q 007509 458 RARSHAEN 465 (601)
Q Consensus 458 ra~~~~~~ 465 (601)
+|......
T Consensus 140 ~Al~~~~~ 147 (307)
T 2ifu_A 140 QAAAVFEN 147 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
No 75
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=22.43 E-value=86 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45899999999999999999998764
No 76
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.32 E-value=84 Score=24.08 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=22.6
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+..|..|...|+|.+|+.+|.++.+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~ 29 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT 29 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788999999999999999998764
No 77
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=22.31 E-value=75 Score=27.19 Aligned_cols=25 Identities=20% Similarity=-0.148 Sum_probs=22.6
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
.+|.+|...|+|.+|+..|.+++..
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4899999999999999999999765
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.03 E-value=1.1e+02 Score=23.35 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=13.3
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+|..|...|+|.+|+.+|.++..
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~ 32 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIK 32 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 55555556666666666555544
No 79
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=21.98 E-value=90 Score=24.23 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+.+|.++...
T Consensus 47 ~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 47 YNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998753
No 80
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=21.95 E-value=90 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 42 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 42 SNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34888999999999999999998764
No 81
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=21.93 E-value=82 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=20.8
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 438 YLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
.+|.+|...|+|.+|+..|.++...-
T Consensus 50 ~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 50 NRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 47888888888888888888887653
No 82
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=21.81 E-value=1e+02 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007509 436 CFYLARSYSLAGKRTEAYALYCRARSHA 463 (601)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (601)
.+.+|..|...|+|.+|+..|.++....
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~ 41 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA 41 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4558999999999999999999998754
No 83
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=21.81 E-value=84 Score=25.20 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|++.+|...|.++...
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45899999999999999999988663
No 84
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.66 E-value=59 Score=24.97 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+.+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 35 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL 35 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34899999999999999999999864
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=21.10 E-value=2.3e+02 Score=27.96 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSHAENA 466 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (601)
..+|..|...|+|.+|+..|.++.+.-.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999998766543
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=21.03 E-value=94 Score=24.34 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+.+|..|...|++.+|+.+|.++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~ 29 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALE 29 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4477777788888888888887765
No 87
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=20.63 E-value=92 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
|+||-.|...|.|.+|+..++++++
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Confidence 5599999999999999999998876
No 88
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.47 E-value=1.1e+02 Score=24.65 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=11.6
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007509 439 LARSYSLAGKRTEAYALYCRARS 461 (601)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (601)
+|..|...|+|.+|+..|.++..
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~ 37 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAIT 37 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHh
Confidence 44445555555555555555444
No 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=20.38 E-value=1.8e+02 Score=26.16 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 007509 154 AEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188 (601)
Q Consensus 154 a~aY~a~i~G~~~~E~~~~W~~al~~~~~ar~iy~ 188 (601)
++||...-.|..+|..+ +|++|+..|..|-.+-.
T Consensus 9 ~~a~~~~~~G~~l~~~g-~~eeAi~~Y~kAL~l~p 42 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAG-EYDEAAANCRRAMEISH 42 (159)
T ss_dssp HHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCC
Confidence 47899999999999997 99999999988766543
No 90
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=20.06 E-value=1e+02 Score=24.11 Aligned_cols=26 Identities=27% Similarity=0.089 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007509 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (601)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (601)
+.+|.+|...|+|.+|+..|.++...
T Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 50 CNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 45899999999999999999999764
Done!